Query 016329
Match_columns 391
No_of_seqs 171 out of 1091
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 11:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016329.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016329hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 37.7 14 0.001 30.6 4.1 39 25-63 33-82 (156)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 10.6 2.5E+02 0.018 20.2 5.9 23 148-171 73-95 (100)
3 d1ryka_ a.60.11.1 (A:) Hypothe 10.4 1E+02 0.0075 21.5 3.3 26 11-36 41-66 (69)
4 d1v54m_ f.23.7.1 (M:) Mitochon 10.3 1.1E+02 0.0078 20.0 3.0 21 155-179 19-39 (43)
5 d1v54d_ f.23.1.1 (D:) Mitochon 9.2 60 0.0043 26.3 1.7 31 4-34 28-59 (144)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 8.6 69 0.005 20.2 1.4 15 153-167 19-33 (37)
7 d1lvaa3 a.4.5.35 (A:511-574) C 8.0 1.1E+02 0.0077 20.8 2.5 23 19-41 3-25 (64)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 7.6 1.6E+02 0.012 17.5 2.7 19 157-175 9-27 (32)
9 d2f05a1 a.59.1.1 (A:1-85) Sin3 6.8 2.3E+02 0.017 19.9 4.0 32 9-40 13-46 (85)
10 d2gf5a1 a.77.1.2 (A:89-191) FA 5.7 3.2E+02 0.023 19.3 4.4 32 7-38 35-67 (103)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=37.73 E-value=14 Score=30.60 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred HHHHHHHHHH-hCCCCCcChhHH----------HHHHHHHHHHHHHHHhh
Q 016329 25 QLETARLYKL-AGINPLAGCLPT----------LATIPVWIGLYRALSNV 63 (391)
Q Consensus 25 qqEm~kLYKk-~GVNPlaGCLPm----------LIQIPIFigLY~vLr~~ 63 (391)
...+.+|||+ +|..|-+|.+|. -|+--+|+.+|+-+.+.
T Consensus 33 ~~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~~ 82 (156)
T d2avue1 33 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKT 82 (156)
T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHhc
Confidence 3578899998 999999998874 27778888888877654
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.59 E-value=2.5e+02 Score=20.16 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHH
Q 016329 148 ALTNFLPLMIGYFALSVPSGLSLY 171 (391)
Q Consensus 148 ~mm~~mPlmii~f~~~~PaGL~LY 171 (391)
..-.+.|++++ +++.+|+.=.+|
T Consensus 73 iiWTviP~lIL-i~l~~pS~~~ly 95 (100)
T d3dtub2 73 IAWTIVPIVIL-VAIGAFSLPVLF 95 (100)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34457787765 345788877776
No 3
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=1e+02 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHHhC
Q 016329 11 KAIQERYAGDQERIQLETARLYKLAG 36 (391)
Q Consensus 11 ~kIqeKYk~Dqek~qqEm~kLYKk~G 36 (391)
-+||++|+.-++...+++.++..+|.
T Consensus 41 Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 41 GKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 46889999888899999999888875
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.34 E-value=1.1e+02 Score=19.97 Aligned_cols=21 Identities=24% Similarity=0.691 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhHhHHHHHHhhHHH
Q 016329 155 LMIGYFALSVPSGLSLYWFTNNLLS 179 (391)
Q Consensus 155 lmii~f~~~~PaGL~LYWitSNlfs 179 (391)
+.++|+++..|+| |+.|++=+
T Consensus 19 Lt~~f~~~L~PaG----wVLshLe~ 39 (43)
T d1v54m_ 19 LSVTFLSFLLPAG----WVLYHLDN 39 (43)
T ss_dssp HHHHHHHHHHHHH----HHHHTHHH
T ss_pred HHHHHHHHHccHH----HHHHHHHH
Confidence 3344556678999 77777643
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.17 E-value=60 Score=26.30 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.1
Q ss_pred hhhchhHHHHHHHhhhCHHHH-HHHHHHHHHH
Q 016329 4 RSLAPQVKAIQERYAGDQERI-QLETARLYKL 34 (391)
Q Consensus 4 q~lQPem~kIqeKYk~Dqek~-qqEm~kLYKk 34 (391)
+++-|++.+|++|-++|=.++ .+|..+||+-
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 567899999999999984444 5677788874
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.59 E-value=69 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhhH
Q 016329 153 LPLMIGYFALSVPSG 167 (391)
Q Consensus 153 mPlmii~f~~~~PaG 167 (391)
+|++++.+++.+-++
T Consensus 19 IPv~f~lLafVWQAa 33 (37)
T d2axtk1 19 IPVLFLALAFVWQAA 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 7
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.02 E-value=1.1e+02 Score=20.81 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=19.2
Q ss_pred hCHHHHHHHHHHHHHHhCCCCCc
Q 016329 19 GDQERIQLETARLYKLAGINPLA 41 (391)
Q Consensus 19 ~Dqek~qqEm~kLYKk~GVNPla 41 (391)
.|++++.+.+..+|++.|..|..
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP~ 25 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPPS 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc
Confidence 45677889999999999999854
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.55 E-value=1.6e+02 Score=17.50 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=10.7
Q ss_pred HHHHHhhhhhHhHHHHHHh
Q 016329 157 IGYFALSVPSGLSLYWFTN 175 (391)
Q Consensus 157 ii~f~~~~PaGL~LYWitS 175 (391)
++|++++|-.++++-+..-
T Consensus 9 ivfialffgiavgiifaik 27 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheeeEE
Confidence 4455556666666655443
No 9
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.75 E-value=2.3e+02 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=24.7
Q ss_pred hHHHHHHHhhhCHHHHH--HHHHHHHHHhCCCCC
Q 016329 9 QVKAIQERYAGDQERIQ--LETARLYKLAGINPL 40 (391)
Q Consensus 9 em~kIqeKYk~Dqek~q--qEm~kLYKk~GVNPl 40 (391)
-++++++++.++++... .+++..|+++-++..
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~ 46 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTK 46 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhcccc
Confidence 37889999988887654 488889998877643
No 10
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.67 E-value=3.2e+02 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=20.7
Q ss_pred chhHHHHHHHhhhCHHHHHHHHH-HHHHHhCCC
Q 016329 7 APQVKAIQERYAGDQERIQLETA-RLYKLAGIN 38 (391)
Q Consensus 7 QPem~kIqeKYk~Dqek~qqEm~-kLYKk~GVN 38 (391)
.++|..|+.+|.+|...+..+|. .-+.++|-+
T Consensus 35 ~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~ 67 (103)
T d2gf5a1 35 DTKIDSIEDRYPRNLTERVRESLRIWKNTEKEN 67 (103)
T ss_dssp HHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 37899999999877444444444 445556654
Done!