BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016331
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved
Protein Module Found In Chromatin Regulatory Complexes
Length = 104
Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG 245
+S WF+ + +H +E Q +P FF+ + P TPE YM RN +V Y NP + V+ +
Sbjct: 16 YSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARR 75
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V G L R+ +FL WG+INY
Sbjct: 76 NVSG-DAAALFRLHKFLTKWGLINY 99
>pdb|2DCE|A Chain A, Solution Structure Of The Swirm Domain Of Human Kiaa1915
Protein
Length = 111
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 25 NIIQEEEKQAIPEFFEGRQAK-TPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 82
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V+ + RI +L G IN+
Sbjct: 83 DVNCIG-----RIHTYLELIGAINF 102
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 72 PASNETEVLIDGGTRICEFPTAVQRVVNR-PHVSVM--DIVAIEAAYLAGDASGRSSAVA 128
PA + +L+ G TRI A++R + + PH V ++VAI AA G +G V
Sbjct: 300 PADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVV 359
Query: 129 LENIS 133
L +++
Sbjct: 360 LLDVT 364
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 153 ERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRL 198
ERS + TP Q++ G + GSR+ VL H SP ++ L
Sbjct: 23 ERSGSGMSTTPLQVLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFL 68
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 153 ERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSP 212
ERS + TP Q++ G + GSR+ VL H SP ++ L ++ +P
Sbjct: 25 ERSGSGMSTTPLQVLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATP 84
Query: 213 DHT 215
T
Sbjct: 85 RLT 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,978,490
Number of Sequences: 62578
Number of extensions: 454083
Number of successful extensions: 1015
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 6
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)