BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016331
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/317 (64%), Positives = 235/317 (74%), Gaps = 11/317 (3%)
Query: 59 DNGDDFQH--ATAPDPASNETEVLIDGGTRICEFPTAVQRVVNRPHVSVMDIVAIEAAYL 116
+N D+ Q PDP EV+ D G+RI +FP V+RVV RPH SVM +VA E A L
Sbjct: 51 ENADELQQNGGATPDPGLGIGEVVEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGL 110
Query: 117 AGDASGRSSAVALENISFGQLQALSVVPADSAALDPERSDTSC---VITPPQIMEGKGVV 173
G+ G+ S ALENISFGQLQALS VPADS LD ERSD S VI+PP IM+G+GVV
Sbjct: 111 IGETRGQGSLPALENISFGQLQALSTVPADS--LDLERSDGSSSAYVISPPPIMDGEGVV 168
Query: 174 KRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDN 233
KRFG VHVLPMHSDWF+P+TV RLERQVVP FFSGKSP+HTPE YME RN IV+KY++N
Sbjct: 169 KRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVEN 228
Query: 234 PEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQS-PEPWNRGSYLREDSNG 292
PEK L +SDCQGLVDGV ED R+FRFL+HWGIINYCA QS P P S +RED+NG
Sbjct: 229 PEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNG 288
Query: 293 EVSVPSDALKSIDSLIKFDKPKCSLKVADVYSS--SCGGADFFDLDNTIRERLSENHCNY 350
EV+VPS AL SIDSLIKFDKP C K +VYSS S G D DLD IRE L ++HCN+
Sbjct: 289 EVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDG-DSPDLDIRIREHLCDSHCNH 347
Query: 351 CSQPIPAVYYQSQKEVD 367
CS+P+P VY+QSQK+ D
Sbjct: 348 CSRPLPTVYFQSQKKGD 364
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 172 VVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYM 231
++ S VHV+P H WFS + +H LE + +P FF+GK T E Y E RN I+ K+
Sbjct: 136 AIRSRDSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFH 195
Query: 232 DNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270
NP ++ + D L G S E + FL++WG+IN+
Sbjct: 196 SNPNIQIELKDLTELEVGDS-EAKQEVMEFLDYWGLINF 233
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
V+P +S WF+ + +H +E Q +P FF+ + P TPE YM RN +V Y NP + V+
Sbjct: 306 VIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVT 365
Query: 242 DCQGLVDGVSPEDLTRIFRFLNHWGIINY 270
+ V G + L R+ +FL WG+INY
Sbjct: 366 TARRNVSGDAAA-LFRLHKFLTKWGLINY 393
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF ++VH +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINYCAAVQS 276
C+ + G D+ I R FL WG+INY +S
Sbjct: 485 ACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAES 518
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF ++VH +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINYCAAVQS 276
C+ + G D+ I R FL WG+INY +S
Sbjct: 485 ACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAES 518
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 151 DPERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGK 210
DP + D S + P G+ V + + ++P ++ WF + +H +ER+ +P FF+GK
Sbjct: 424 DPSKGDPSRSVDP-----GEDNVTEQTNHI-IIPSYASWFDYNCIHVIERRALPEFFNGK 477
Query: 211 SPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFR---FLNHWGI 267
+ TPE Y+ RN ++ Y NP++ L + C+ + G D+ + R FL WG+
Sbjct: 478 NKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTG----DVCAVMRVHAFLEQWGL 533
Query: 268 INY 270
+NY
Sbjct: 534 VNY 536
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF + +H +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 450 IIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 509
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINY 270
C+ + G D+ + R FL WG++NY
Sbjct: 510 ACRRNLTG----DVCAVMRVHAFLEQWGLVNY 537
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF +H +ER+ P FF+GKSP TP Y + R+ ++ Y P + L V+
Sbjct: 19 IVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVT 78
Query: 242 DC-QGLVDGVSPEDLTRIFRFLNHWGIINY 270
C + LV V + R+ FL WG+INY
Sbjct: 79 ACRRNLVGDVCA--IIRVHAFLEQWGLINY 106
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1
SV=1
Length = 512
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 180 VHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLI 239
++ +P S WF D +H +ER+ FF+ S TP+ Y E R+ I+ K+ ++ +RL
Sbjct: 12 LYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLT 71
Query: 240 VSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQ 275
+ + + G L ++F FL WG+IN+ ++++
Sbjct: 72 FTSVRKFLVG-DVNLLQKVFLFLEKWGLINFSSSLK 106
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 180 VHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLI 239
+HV P +S WFS ++ E + +P FF +S P+ Y+ RN I+ +Y D+ +++
Sbjct: 48 IHV-PSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKIS 106
Query: 240 VSDC-QGLVDGVSPEDLTRIFRFLNHWGIINY-CAAVQSPEPW 280
+D + LV V + R+F FL+ WG+INY +A P W
Sbjct: 107 FTDVRRTLVSDVVS--IRRVFDFLDSWGLINYNSSASAKPLKW 147
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 183 LPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSD 242
+P + WF VH +E++ P FF GK+ TPE Y E R+ +++ + N + L +
Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTA 113
Query: 243 CQGLVDGVSPEDLTRIFRFLNHWGIINY 270
C+ + G L R+ RFL WG+INY
Sbjct: 114 CRRNLAGDVCAVL-RVHRFLEQWGLINY 140
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P + WF +H +E++ P FF+ S TP+ Y + RN I+ Y +P + L ++
Sbjct: 81 IIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTIT 140
Query: 242 DCQGLVDGVSPEDLTRIFRFLNHWGIINY 270
+ V + + +I FL WG+INY
Sbjct: 141 AVRRNV-AMDVASIVKIHAFLEKWGLINY 168
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ-GLVDGVS 251
+T+ E+Q + FF G+ P TPE+Y++ RN+I+ ++ + K L + + GL +
Sbjct: 325 NTITEEEKQAISEFFEGR-PSKTPERYLKIRNYILDQWRRSKPKYLNKTSVRPGLKNCGD 383
Query: 252 PEDLTRIFRFLNHWGIINY 270
+ RI +L G IN+
Sbjct: 384 VNCIGRIHTYLELIGAINF 402
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 375 NVIQEEEKQAIPEFFEGRQT-KTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 432
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY-C--AAVQSPEPWNR 282
V+ + RI +L G IN+ C A P+P ++
Sbjct: 433 DVNCIG-----RIHTYLELIGAINFGCEQAVYNRPQPLDK 467
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 199 ERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQGLVDGVS 251
E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G V+ +
Sbjct: 392 EKQAIPEFFEGRQA-KTPERYLKIRNYILDQWERCKPKYLNKTSVRPGLKNC-GDVNCIG 449
Query: 252 PEDLTRIFRFLNHWGIINY-C--AAVQSPEPWNR 282
RI +L G IN+ C A P+P ++
Sbjct: 450 -----RIHTYLELIGAINFGCEQAVYNRPQPADK 478
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 384 NIIQEEEKQAIPEFFEGRQA-KTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 441
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V+ + RI +L G IN+
Sbjct: 442 DVNCIG-----RIHTYLELIGAINF 461
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 199 ERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ-GLVDGVSPEDLTR 257
E+Q +P FF G+ TP++Y+ RN+I+ ++ + K L + + GL + + R
Sbjct: 362 EKQAIPEFFEGRQA-KTPDRYLRIRNYILDQWENCKPKYLNKTSVRPGLKNCGDVNCIGR 420
Query: 258 IFRFLNHWGIINY 270
I +L G IN+
Sbjct: 421 IHTYLELIGAINF 433
>sp|B0SW62|RUTD_CAUSK Putative aminoacrylate hydrolase RutD OS=Caulobacter sp. (strain
K31) GN=rutD PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 103 VSVMDIVAIEAAYLAGDASGRSSAVALENISFGQLQALSVVPADSAALDPERSDTSCVIT 162
V +MD + +E A++ G A+G ++ +AL +L L VV S P+ C T
Sbjct: 79 VKLMDALGLERAHVVGHAAGGNAGLALALNHPDRLDKLVVVNGWS---RPDPHIKRCFDT 135
Query: 163 PPQIMEGKGVVKRFGSRVHVLPMH---SDWFSPDTVHRLERQVVPHFFSGKSPD 213
++ G+ + VH P+ +DW S + RLE + V H SPD
Sbjct: 136 RLALLNDTGIA----AYVHAQPLFLYPADWLSANNA-RLEAEEVHHINGFPSPD 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,802,221
Number of Sequences: 539616
Number of extensions: 7444662
Number of successful extensions: 86348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 63771
Number of HSP's gapped (non-prelim): 17115
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)