Query 016331
Match_columns 391
No_of_seqs 153 out of 276
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 1.1E-41 3.9E-46 287.1 9.6 94 181-275 11-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 2.5E-41 8.4E-46 287.7 10.0 97 178-276 10-108 (111)
3 2z3y_A Lysine-specific histone 98.8 5.6E-09 1.9E-13 108.6 6.9 85 190-277 12-100 (662)
4 4gut_A Lysine-specific histone 98.5 1.4E-07 4.8E-12 101.1 9.4 88 181-274 217-322 (776)
5 2xag_A Lysine-specific histone 98.0 6.1E-06 2.1E-10 89.6 7.2 86 188-276 181-270 (852)
6 2aqe_A Transcriptional adaptor 96.2 0.006 2.1E-07 49.7 5.2 70 191-269 19-88 (90)
7 2cuj_A Transcriptional adaptor 96.0 0.0088 3E-07 50.5 5.4 70 191-269 37-106 (108)
8 2elj_A Transcriptional adapter 95.7 0.012 4.3E-07 47.7 5.0 70 191-268 19-88 (88)
9 2fu4_A Ferric uptake regulatio 71.5 2.7 9.3E-05 31.6 3.0 50 222-271 18-71 (83)
10 1mzb_A Ferric uptake regulatio 67.1 6.2 0.00021 32.9 4.5 51 222-272 19-73 (136)
11 2o03_A Probable zinc uptake re 66.8 7.6 0.00026 32.2 5.0 55 218-273 8-66 (131)
12 2heo_A Z-DNA binding protein 1 63.3 7.4 0.00025 29.0 3.9 52 216-269 5-56 (67)
13 2w57_A Ferric uptake regulatio 62.8 6.5 0.00022 33.5 3.9 50 222-271 18-71 (150)
14 1tot_A CREB-binding protein; z 62.7 1.6 5.4E-05 32.1 0.0 35 343-378 4-38 (52)
15 2xig_A Ferric uptake regulatio 60.1 10 0.00036 32.2 4.7 52 220-272 26-81 (150)
16 2fe3_A Peroxide operon regulat 53.4 15 0.00051 30.9 4.6 50 222-272 23-76 (145)
17 2htj_A P fimbrial regulatory p 52.2 14 0.00048 27.8 3.8 47 223-272 2-48 (81)
18 3mwm_A ZUR, putative metal upt 51.1 24 0.00081 29.6 5.4 54 218-272 11-68 (139)
19 3eyy_A Putative iron uptake re 47.3 21 0.00071 30.2 4.5 48 222-271 20-71 (145)
20 2e5r_A Dystrobrevin alpha; ZZ 41.9 10 0.00034 28.7 1.5 33 346-378 12-45 (63)
21 2pjp_A Selenocysteine-specific 41.4 36 0.0012 27.7 5.0 52 214-268 59-110 (121)
22 2dip_A Zinc finger SWIM domain 41.3 8.6 0.00029 31.6 1.1 34 345-378 31-65 (98)
23 3dpt_A ROCO, RAB family protei 41.0 24 0.00081 34.4 4.4 62 213-276 12-76 (332)
24 3tqn_A Transcriptional regulat 40.5 33 0.0011 27.5 4.6 55 215-271 11-66 (113)
25 2fc7_A ZZZ3 protein; structure 40.1 9.1 0.00031 30.4 1.1 34 344-377 20-57 (82)
26 4ham_A LMO2241 protein; struct 38.9 35 0.0012 28.1 4.6 53 217-271 18-71 (134)
27 4ets_A Ferric uptake regulatio 37.9 38 0.0013 29.2 4.8 49 222-271 34-88 (162)
28 3by6_A Predicted transcription 37.0 33 0.0011 28.3 4.0 54 215-270 13-67 (126)
29 2ek5_A Predicted transcription 36.3 33 0.0011 28.5 4.0 55 215-271 6-61 (129)
30 3c7j_A Transcriptional regulat 32.7 32 0.0011 31.1 3.6 58 213-272 26-83 (237)
31 2oqg_A Possible transcriptiona 31.9 72 0.0024 24.5 5.1 48 222-273 22-69 (114)
32 3cuo_A Uncharacterized HTH-typ 31.8 73 0.0025 23.7 5.0 48 222-272 25-72 (99)
33 3r0a_A Putative transcriptiona 31.2 73 0.0025 25.8 5.2 49 223-272 28-76 (123)
34 2d1h_A ST1889, 109AA long hypo 31.1 76 0.0026 23.6 5.0 38 236-274 35-72 (109)
35 2x4h_A Hypothetical protein SS 30.9 81 0.0028 25.1 5.4 55 214-272 11-65 (139)
36 2jt1_A PEFI protein; solution 29.9 79 0.0027 24.5 4.9 58 216-274 3-60 (77)
37 3e3v_A Regulatory protein RECX 28.7 85 0.0029 27.5 5.6 57 214-273 12-70 (177)
38 1oyi_A Double-stranded RNA-bin 28.1 73 0.0025 25.4 4.5 54 221-280 17-70 (82)
39 1y0u_A Arsenical resistance op 27.0 81 0.0028 24.0 4.5 45 222-271 32-76 (96)
40 1v4r_A Transcriptional repress 26.7 19 0.00066 28.1 0.9 56 213-270 11-67 (102)
41 3ic7_A Putative transcriptiona 26.3 31 0.0011 28.4 2.1 57 213-271 11-68 (126)
42 2kj8_A Putative prophage CPS-5 26.0 44 0.0015 25.7 2.9 56 215-270 26-93 (118)
43 2k4b_A Transcriptional regulat 25.9 93 0.0032 24.9 4.9 36 237-272 49-87 (99)
44 1qgp_A Protein (double strande 25.9 89 0.003 23.8 4.6 50 221-271 14-64 (77)
45 1qbj_A Protein (double-strande 25.6 80 0.0027 24.6 4.3 48 223-271 12-60 (81)
46 3lys_A Prophage PI2 protein 01 25.5 58 0.002 24.8 3.5 61 215-275 28-99 (112)
47 3neu_A LIN1836 protein; struct 24.8 61 0.0021 26.5 3.7 56 214-271 14-70 (125)
48 2b0l_A GTP-sensing transcripti 24.8 58 0.002 26.1 3.4 53 217-272 22-77 (102)
49 3df8_A Possible HXLR family tr 24.7 1.1E+02 0.0036 24.4 5.0 41 233-273 38-78 (111)
50 1ub9_A Hypothetical protein PH 24.4 1.2E+02 0.0041 22.4 5.0 48 222-272 17-64 (100)
51 2k6x_A Sigma-A, RNA polymerase 22.2 1.3E+02 0.0044 22.7 4.8 47 219-267 7-57 (72)
52 1sfx_A Conserved hypothetical 22.2 1E+02 0.0035 22.8 4.3 37 237-274 34-70 (109)
53 2kj5_A Phage integrase; GFT PS 22.1 1.5E+02 0.005 22.2 5.2 22 253-274 77-98 (116)
54 1cf7_A Protein (transcription 22.0 1.3E+02 0.0045 23.4 4.9 45 225-269 18-62 (76)
55 1r1u_A CZRA, repressor protein 21.4 1.3E+02 0.0045 23.3 4.8 47 222-272 27-73 (106)
56 3u1d_A Uncharacterized protein 21.0 1.3E+02 0.0043 26.5 5.1 53 222-274 30-82 (151)
57 3pqk_A Biofilm growth-associat 21.0 1.4E+02 0.0048 22.7 4.9 48 222-273 24-71 (102)
58 4a5n_A Uncharacterized HTH-typ 20.8 1.2E+02 0.0041 25.5 4.7 43 235-277 37-79 (131)
59 1lva_A Selenocysteine-specific 20.7 1.1E+02 0.0039 27.9 5.0 50 215-268 197-246 (258)
60 2y75_A HTH-type transcriptiona 20.4 1.1E+02 0.0039 24.5 4.4 37 234-271 23-59 (129)
61 1yyv_A Putative transcriptiona 20.4 1.3E+02 0.0046 24.7 4.9 41 235-275 46-86 (131)
62 2kiw_A INT protein; alpha, str 20.3 1.3E+02 0.0046 22.2 4.6 59 215-274 21-91 (111)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=1.1e-41 Score=287.08 Aligned_cols=94 Identities=35% Similarity=0.704 Sum_probs=84.5
Q ss_pred eeCCCCCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHH
Q 016331 181 HVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFR 260 (391)
Q Consensus 181 ~vIPs~s~WFd~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~ 260 (391)
-..|+++.||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+| |+++|+|||+
T Consensus 11 ~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RVh~ 89 (104)
T 2fq3_A 11 GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRLHK 89 (104)
T ss_dssp ------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHHHH
T ss_pred CCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hhhhhceeccccCCC
Q 016331 261 FLNHWGIINYCAAVQ 275 (391)
Q Consensus 261 FLE~WGLINy~~~~~ 275 (391)
|||+|||||||++++
T Consensus 90 FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 90 FLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHTTSSSSCC---
T ss_pred HHHHcCeeccCCCCC
Confidence 999999999999873
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=287.71 Aligned_cols=97 Identities=24% Similarity=0.367 Sum_probs=92.9
Q ss_pred CceeeCCCCCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhccc--CCCCHHHH
Q 016331 178 SRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPEDL 255 (391)
Q Consensus 178 ~~~~vIPs~s~WFd~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L--~G~Dv~~I 255 (391)
.++++||+|+.||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +| |+++|
T Consensus 10 ~~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i 87 (111)
T 2dce_A 10 EEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCI 87 (111)
T ss_dssp CCSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHH
T ss_pred CcCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHH
Confidence 357999999999999999999999999999998 799999999999999999999999999999999999 47 99999
Q ss_pred HHHHHhhhhhceeccccCCCC
Q 016331 256 TRIFRFLNHWGIINYCAAVQS 276 (391)
Q Consensus 256 ~RVh~FLE~WGLINy~~~~~~ 276 (391)
+|||+|||+|||||||+++..
T Consensus 88 ~RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 88 GRIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHHcCeeecCCChhh
Confidence 999999999999999999864
No 3
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.78 E-value=5.6e-09 Score=108.62 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhh
Q 016331 190 FSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHW 265 (391)
Q Consensus 190 Fd~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~W 265 (391)
|+.+.+|+.|+.+|||+..+. ..+...||.|||.|+.+|+.||..+||+.+|...+ .. |...|.+|+.||..+
T Consensus 12 l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~~~~~ 88 (662)
T 2z3y_A 12 LPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSYLERH 88 (662)
T ss_dssp CCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHHHHHH
Confidence 589999999999999999762 34567999999999999999999999999994433 33 778999999999999
Q ss_pred ceeccccCCCCC
Q 016331 266 GIINYCAAVQSP 277 (391)
Q Consensus 266 GLINy~~~~~~~ 277 (391)
|+||++......
T Consensus 89 ~~~~~~~~~~~~ 100 (662)
T 2z3y_A 89 GLINFGIYKRIK 100 (662)
T ss_dssp TSSSCSSCBCSS
T ss_pred HHHhcCCccccC
Confidence 999998876533
No 4
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.55 E-value=1.4e-07 Score=101.09 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=74.0
Q ss_pred eeCCCCCCCCCC------------CCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccC
Q 016331 181 HVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVD 248 (391)
Q Consensus 181 ~vIPs~s~WFd~------------d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~ 248 (391)
..+..+-.||-. +.|+..|+.+||||..+ +..||.|||.|+.+|+.||...||...|.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~~~~ 290 (776)
T 4gut_A 217 PGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIPHII 290 (776)
T ss_dssp -CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGGGCC
T ss_pred cccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhhhcc
Confidence 445567777755 99999999999999965 569999999999999999999999999987663
Q ss_pred --C-C---CHHHHHHHHHhhhhhceeccccCC
Q 016331 249 --G-V---SPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 249 --G-~---Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
+ . .+..+.+|+.||.++|+||++...
T Consensus 291 ~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 291 VRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred cccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 2 1 345689999999999999998754
No 5
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=98.02 E-value=6.1e-06 Score=89.58 Aligned_cols=86 Identities=20% Similarity=0.364 Sum_probs=71.6
Q ss_pred CCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHh----cccCCCCHHHHHHHHHhhh
Q 016331 188 DWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ----GLVDGVSPEDLTRIFRFLN 263 (391)
Q Consensus 188 ~WFd~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cR----r~L~G~Dv~~I~RVh~FLE 263 (391)
..|..+.+|..|+.+|+++-..- .....+|+.|||+|+.+|+.||...|+...|. +.+.. |...|.+|++||.
T Consensus 181 ~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~~~ 257 (852)
T 2xag_A 181 SRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSYLE 257 (852)
T ss_dssp TTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHHHH
T ss_pred hcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHHHH
Confidence 44688899999999999988651 23567999999999999999999999987773 33334 7889999999999
Q ss_pred hhceeccccCCCC
Q 016331 264 HWGIINYCAAVQS 276 (391)
Q Consensus 264 ~WGLINy~~~~~~ 276 (391)
+|++||++.....
T Consensus 258 ~~~~~~~~~~~~~ 270 (852)
T 2xag_A 258 RHGLINFGIYKRI 270 (852)
T ss_dssp HTTSSSCSSCBCS
T ss_pred HHHHHhcCccccc
Confidence 9999999887544
No 6
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=96.18 E-value=0.006 Score=49.73 Aligned_cols=70 Identities=16% Similarity=0.378 Sum_probs=58.6
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceec
Q 016331 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (391)
Q Consensus 191 d~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLIN 269 (391)
+.+-+|+-|++.+-.. .=.|..||.+...||.-...+.. |+.++|+..+. +|++-..||++||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g~--l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQGG--LRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHSC--CCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 4567889999886543 35699999999999999966433 89999999764 69999999999999999995
No 7
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.97 E-value=0.0088 Score=50.53 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=59.2
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceec
Q 016331 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (391)
Q Consensus 191 d~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLIN 269 (391)
..+-+|+-|++.+-.. .=.|..||.+.+.||.-+..+- .|+.++||..+. +|++-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 5678899999986554 3569999999999999996543 399999999765 69999999999999999995
No 8
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.012 Score=47.68 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=58.4
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhcee
Q 016331 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (391)
Q Consensus 191 d~d~Ih~iEk~~lPEFF~gks~~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLI 268 (391)
+.+-.|+-|++.+-.. .=.|..||.+.+.||.-+..+ ...++.++|+..+. +|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~k-iD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLN-IDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHc-ccHHHHHHHHHHHHHcCCC
Confidence 5567888898875543 356999999999999999654 45688999999764 6999999999999999987
No 9
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.48 E-value=2.7 Score=31.62 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceeccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
-|-.|++....++...+|+.+.-..+ .++....|.|....|+..|+|.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 35567776655432689999987666 257889999999999999999643
No 10
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.07 E-value=6.2 Score=32.91 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceecccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
-|-.|++....+....+|..+.-..| .+++...|.|...+|+..|||.--.
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 46778887766544789999986555 3578999999999999999997433
No 11
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=66.84 E-value=7.6 Score=32.16 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceeccccC
Q 016331 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYCAA 273 (391)
Q Consensus 218 ~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~~~ 273 (391)
+.-.-|-.|++..... ...+|..+.-..| .+++...|.|...+|...|||.=-..
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 4456688889888764 6789999986555 35789999999999999999975443
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.34 E-value=7.4 Score=28.97 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceec
Q 016331 216 PEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (391)
Q Consensus 216 Pe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLIN 269 (391)
|+.-...|..||+....+ ..+++.++.-+.+ |+....+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEe
Confidence 433345788999988764 3579999987766 468899999999999999984
No 13
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=62.81 E-value=6.5 Score=33.54 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceeccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
-|-.|++....++...+|..+.-..| .+++...|.|...+|+..|||.--
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 46677877765543789999986655 357899999999999999999643
No 14
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=62.74 E-value=1.6 Score=32.08 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=29.2
Q ss_pred ccCcccCcCCCCCCCceeeeeeccCcccCCCcchhh
Q 016331 343 LSENHCNYCSQPIPAVYYQSQKEVDGRFSPLTFVYL 378 (391)
Q Consensus 343 l~ey~C~~Cg~DCs~~rYhsqK~~dg~f~p~~~s~d 378 (391)
...+.|+.|+.+ -..||+|+.=.|+-+...+|+..
T Consensus 4 ~~~~~Cd~C~~~-ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 4 RFVYTCNECKHH-VETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp SSCEEETTTTEE-ESSEEEESSSSSCEECHHHHHHH
T ss_pred cCEEECCCCCCC-CcceEEcCCCCCchhHHHHHhCC
Confidence 356899999999 47899999999998888887653
No 15
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=60.06 E-value=10 Score=32.23 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceecccc
Q 016331 220 MECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 220 l~iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
-.-|-.|++....++ ..+|..+.-..| .+++...|.|...+|+..|||.=-.
T Consensus 26 T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 345778888887764 589999986655 3578999999999999999996443
No 16
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.37 E-value=15 Score=30.93 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceecccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
-|-.|++..... ...+|..+.-..| .+++...|.|...+|...|||.--.
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 466778777664 5689999986555 3578999999999999999996443
No 17
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=52.17 E-value=14 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 223 RN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
|..|+.....++ .+|..+..+.+ |+....+.|...-|+..|+|-...
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEec
Confidence 677888776653 48999987766 568889999999999999997543
No 18
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.13 E-value=24 Score=29.60 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceecccc
Q 016331 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 218 ~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
+.-.-|..|++....++ ..+|..+.-..| .+++...|.|...+|..-|||.--.
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45567888998876664 599999986555 3478999999999999999996443
No 19
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.35 E-value=21 Score=30.16 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc----CCCCHHHHHHHHHhhhhhceeccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L----~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
-|..|++....++ .+|..+.-..| .+++...|.|...+|..-|||.=-
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 4666777666654 89998874444 347899999999999999999643
No 20
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.86 E-value=10 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.1
Q ss_pred cccCcCCCC-CCCceeeeeeccCcccCCCcchhh
Q 016331 346 NHCNYCSQP-IPAVYYQSQKEVDGRFSPLTFVYL 378 (391)
Q Consensus 346 y~C~~Cg~D-Cs~~rYhsqK~~dg~f~p~~~s~d 378 (391)
..|+.|+.. -...||+|+.=.|+-+...+|+..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 789999976 999999999988888887777653
No 21
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=41.39 E-value=36 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhcee
Q 016331 214 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (391)
Q Consensus 214 kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLI 268 (391)
-.++.|-++++.|.+...++ ..+|+.+.|..+ |.--....=|.+||++.|+.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~l-g~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQEC--GSTCAADFRDRL-GVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHH-TSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHC--CCccHHHHHHHH-CCcHHHHHHHHHHHhhcCCe
Confidence 45899999999999988776 779999999988 44444455799999999985
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=41.27 E-value=8.6 Score=31.61 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=29.1
Q ss_pred CcccCcCCC-CCCCceeeeeeccCcccCCCcchhh
Q 016331 345 ENHCNYCSQ-PIPAVYYQSQKEVDGRFSPLTFVYL 378 (391)
Q Consensus 345 ey~C~~Cg~-DCs~~rYhsqK~~dg~f~p~~~s~d 378 (391)
.+.|+.|+. +-...||+|+.=.|+-++..||...
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 388999997 6888999999998988888887764
No 23
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=41.05 E-value=24 Score=34.35 Aligned_cols=62 Identities=16% Similarity=0.409 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHHhccc--CC-CCHHHHHHHHHhhhhhceeccccCCCC
Q 016331 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DG-VSPEDLTRIFRFLNHWGIINYCAAVQS 276 (391)
Q Consensus 213 ~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L--~G-~Dv~~I~RVh~FLE~WGLINy~~~~~~ 276 (391)
.+-|..|+.+|+.+.+.- . ...+||.+++++.. .| .+-..+.-+..||...|.|-|.-+...
T Consensus 12 ~~iP~sW~~l~~~L~~~~-~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~~~ 76 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEAT-T-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDL 76 (332)
T ss_dssp -----CHHHHHHHHHHHH-H-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTTCC
T ss_pred CccCHHHHHHHHHHHhhh-c-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCCcc
Confidence 477999999999999863 3 46899999987643 45 333468899999999999987765543
No 24
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=40.50 E-value=33 Score=27.52 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 215 TPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
...+|-.||+.|++-- ..|...| +..+..+.+ |+.-..+.+.+.-|+..|||-..
T Consensus 11 ~~~i~~~i~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGS-YVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3456666676666533 4678889 887776665 46788999999999999999543
No 25
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=40.14 E-value=9.1 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.8
Q ss_pred cCcccCcCCC-CCCCceeeeeeccC---cccCCCcchh
Q 016331 344 SENHCNYCSQ-PIPAVYYQSQKEVD---GRFSPLTFVY 377 (391)
Q Consensus 344 ~ey~C~~Cg~-DCs~~rYhsqK~~d---g~f~p~~~s~ 377 (391)
..+.|+.|+. +-...||+|+.=.| +.++..||..
T Consensus 20 ~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 20 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 4578999996 67789999999888 8898888864
No 26
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=38.92 E-value=35 Score=28.09 Aligned_cols=53 Identities=11% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 217 EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 217 e~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
.+|-.||+.|++-- ..|...| +..+....+ |+.-..|.+.+.-|+.-|||-..
T Consensus 18 QI~~~i~~~I~~G~-l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 18 QIVQKIKEQVVKGV-LQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp HHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCC-CCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 45555555555433 4689999 777766555 56788999999999999999654
No 27
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.89 E-value=38 Score=29.24 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhccc------CCCCHHHHHHHHHhhhhhceeccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLV------DGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L------~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
-|-.|++....+. ..+|..+.-..| .+++...|.|...+|..-|||.=-
T Consensus 34 qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 34 QREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3677887776664 899999884433 247889999999999999999643
No 28
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=37.00 E-value=33 Score=28.32 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceecc
Q 016331 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (391)
Q Consensus 215 TPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy 270 (391)
...+|-.||+.|+..- ..|...| +..+....+ |+....+.+.+.-|+..|||-.
T Consensus 13 ~~~i~~~l~~~I~~g~-~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 13 YLQLVDRIKNEVATDV-LSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 3456777777776533 4678899 888877666 4678899999999999999943
No 29
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=36.35 E-value=33 Score=28.50 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 215 TPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
...+|-.||+.|+.-- ..|...| +..+....+ |+.-..+.+.+.-|+..|||-..
T Consensus 6 ~~~i~~~i~~~I~~g~-l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGT-LSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEe
Confidence 3467888888887643 4688999 888876665 46788999999999999999643
No 30
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=32.72 E-value=32 Score=31.08 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 213 ~kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
+..+.+|-.||+.|+... ..|...|+..+....+ |+--..|.+-..-|+.-|||-...
T Consensus 26 s~~~~v~~~L~~~I~~g~-l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGS-LPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp GHHHHHHHHHHHHHHTSS-SCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHhCC-CCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 456779999999999854 5789999988877766 567889999999999999997553
No 31
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=31.91 E-value=72 Score=24.53 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccC
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAA 273 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~ 273 (391)
.|-.||... .++ .+|+++..+.+ |+....+.|...-|+..|||.....
T Consensus 22 ~r~~IL~~L-~~~--~~~~~ela~~l-~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTEL-GRA--DQSASSLATRL-PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHH-HHS--CBCHHHHHHHS-SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-HcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 466677765 332 38999987766 5688899999999999999976543
No 32
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=31.83 E-value=73 Score=23.69 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
.|-.|+..-.. ...+|+++..+.+ |+....+.|...-|+..|||....
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l-~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRIT-GLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHH-CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45566655433 3468999998877 578889999999999999998764
No 33
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.22 E-value=73 Score=25.79 Aligned_cols=49 Identities=8% Similarity=0.219 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 223 RN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
+-.|+..-..++..++|..+....+ |++...+.|...-|+..|+|--..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l-~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSL-KLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEeeC
Confidence 3345555455665559999998776 468999999999999999997543
No 34
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=31.13 E-value=76 Score=23.65 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=31.4
Q ss_pred ceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCC
Q 016331 236 KRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 236 ~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
..+|.++..+.+ |+....+.|+..-|+..|+|.....+
T Consensus 35 ~~~t~~ela~~l-~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIF-KLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 358999988766 57889999999999999999876543
No 35
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=30.92 E-value=81 Score=25.13 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 214 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 214 kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
-|+..|..++ .|+.... ....+|+++..+.+ |++...+.|+..=|+..|||....
T Consensus 11 lt~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l-~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 11 LSRREFSYLL-TIKRYND--SGEGAKINRIAKDL-KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CCHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHh-CCChHHHHHHHHHHHHCCCEEecC
Confidence 4566665555 3444443 34568999987776 468899999999999999998753
No 36
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=29.87 E-value=79 Score=24.49 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCC
Q 016331 216 PEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 216 Pe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
..++.+|-++|-....++-....|+.+....+ |+-...+.|-...||.-|+|--....
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l-gvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAA-GLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 34566666666555444324468999988776 45678899999999999999655433
No 37
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.70 E-value=85 Score=27.47 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccC--CCCHHHHHHHHHhhhhhceeccccC
Q 016331 214 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVD--GVSPEDLTRIFRFLNHWGIINYCAA 273 (391)
Q Consensus 214 kTPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~--G~Dv~~I~RVh~FLE~WGLINy~~~ 273 (391)
+..+.|...+|..|..= . .+.-|-.++++.|. |.+...|-.|..+|...|+||=..+
T Consensus 12 ~~~~~~~~a~~~Al~~L-s--~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 12 KLADDISKGYNAALNYL-S--YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp -CHHHHHHHHHHHHHHH-H--SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHh-c--cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 34667888888877533 2 45667888887775 5788899999999999999985554
No 38
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=28.07 E-value=73 Score=25.40 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCCCCCCCC
Q 016331 221 ECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPW 280 (391)
Q Consensus 221 ~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~~~~p~~ 280 (391)
..+..||..-+.++ +|+.+.-+.|. +....+.|...=||+=|+|... +...|.|
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~Lg-iSk~aVr~~L~~Le~eG~I~~~--~~~PP~W 70 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLN-MEKREVNKALYDLQRSAMVYSS--DDIPPRW 70 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSS-SCHHHHHHHHHHHHHHTSSEEC--SSSSCEE
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEeC--CCCCCcc
Confidence 46778887776665 99999988774 6788999999999999999876 3334444
No 39
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=26.97 E-value=81 Score=24.01 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
.|-.||..- . ..+|+++..+.+ |+....+.|...-|+..|||...
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l-~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTL-SLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEE
Confidence 355666655 3 348999987766 56888999999999999999754
No 40
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=26.74 E-value=19 Score=28.10 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceecc
Q 016331 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (391)
Q Consensus 213 ~kTPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy 270 (391)
.....+|-.||+.|+... ..|...| +..+..+.+ |+-...|.+.+.-|+.-|||-.
T Consensus 11 ~~~~~l~~~i~~~I~~~~-l~~g~~lps~~eLa~~~-~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 11 KGYADVATHFRTLIKSGE-LAPGDTLPSVADIRAQF-GVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp CCHHHHHHHHHHHTTTTS-CCTTSBCCCHHHHHHHS-SSCTTHHHHHTTTTTTSSCCEE
T ss_pred CHHHHHHHHHHHHHHhCC-CCCcCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 345667777777777632 3567888 888887766 3456789999999999999953
No 41
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=26.31 E-value=31 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 213 ~kTPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
.....+|-.||..|+.-- ..|...| +..+....+ |+....+.+.+.-|+..|||-..
T Consensus 11 ~~~~~i~~~l~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 11 AIYLQIADRICDDILLGQ-YEEEGRIPSVREYASIV-EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp -CTTHHHHHHHHHHHTTS-SCBTSEECCTTTTTTCC--CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEE
Confidence 455678888888888754 4688899 777776655 45667899999999999999543
No 42
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=25.99 E-value=44 Score=25.70 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=33.9
Q ss_pred ChHHHHH-HHHHHHHHHHhCCCceeeHHHHhcccC-----CC------CHHHHHHHHHhhhhhceecc
Q 016331 215 TPEKYME-CRNHIVAKYMDNPEKRLIVSDCQGLVD-----GV------SPEDLTRIFRFLNHWGIINY 270 (391)
Q Consensus 215 TPe~Yl~-iRN~II~~yr~NP~~yLT~T~cRr~L~-----G~------Dv~~I~RVh~FLE~WGLINy 270 (391)
|-+.|.. ++++|+..+-.-|-..||..+++..+. |. -...|..|+.|.-.||+|..
T Consensus 26 T~~~y~~~l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~ 93 (118)
T 2kj8_A 26 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 4444432 445566666566777888888766542 20 12345667778888898853
No 43
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=25.93 E-value=93 Score=24.92 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=29.7
Q ss_pred eeeHHHHhcccC---CCCHHHHHHHHHhhhhhceecccc
Q 016331 237 RLIVSDCQGLVD---GVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 237 yLT~T~cRr~L~---G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
.+|..+..+.|. ++....|.|+...|+.-|||--..
T Consensus 49 ~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 49 EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 589999988775 345789999999999999996543
No 44
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.90 E-value=89 Score=23.79 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCC-CceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 221 ECRNHIVAKYMDNP-EKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 221 ~iRN~II~~yr~NP-~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
++...|+..-++|+ ..++|..+..+.|. ++...|.|...=|+.-|+|-..
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-vs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG-TPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC-CCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEec
Confidence 44577888888887 78899999887764 6888999999999999999654
No 45
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=25.64 E-value=80 Score=24.60 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCC-CceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 223 RNHIVAKYMDNP-EKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 223 RN~II~~yr~NP-~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
...|++..++|+ ..++|..+..+.| |+.-..|.|...=|+.-|+|-..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEec
Confidence 344555555655 7899999987776 46778999999999999999764
No 46
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=25.53 E-value=58 Score=24.84 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccC----CCC-------HHHHHHHHHhhhhhceeccccCCC
Q 016331 215 TPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVD----GVS-------PEDLTRIFRFLNHWGIINYCAAVQ 275 (391)
Q Consensus 215 TPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~----G~D-------v~~I~RVh~FLE~WGLINy~~~~~ 275 (391)
|-..|..+-+.|+..+-.-|-..||..++++.+. +.- ...|..|+.|.-.||+|...+...
T Consensus 28 T~~~y~~~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~Av~~g~i~~NP~~~ 99 (112)
T 3lys_A 28 TYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQCLIEEGRLQKDFTTR 99 (112)
T ss_dssp HHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHCCCcccCcccc
Confidence 3344444334444444345667788777755431 101 235667788888999997655433
No 47
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.84 E-value=61 Score=26.46 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 214 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 214 kTPe~Yl~iRN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
....+|-.||+.|++-- .-|...| |..+..+.+ |+....+.+.+.-|+.-|||--.
T Consensus 14 ~~~~i~~~i~~~I~~g~-~~~g~~Lps~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 14 IYSQISDWMKKQMITGE-WKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHHHHTTS-SCTTCBCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHhCC-CCCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCeEEEe
Confidence 33456666666666532 3578888 577776655 46788999999999999999543
No 48
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.81 E-value=58 Score=26.09 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=41.2
Q ss_pred HHHHHH--HHHHHHHHHhCCCcee-eHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 217 EKYMEC--RNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 217 e~Yl~i--RN~II~~yr~NP~~yL-T~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
..|..| |+.|+..| .|...| +..+..+.+ |+-...|.+.+.-|+.-|||-...
T Consensus 22 ~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~l-gVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 22 LSYSELEAIEHIFEEL--DGNEGLLVASKIADRV-GITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp SCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 467777 99999443 567777 888876665 467789999999999999996543
No 49
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.72 E-value=1.1e+02 Score=24.40 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccC
Q 016331 233 NPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAA 273 (391)
Q Consensus 233 NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~ 273 (391)
+....+|+++..+.+.|+.-..|.+...-|+..|||.-...
T Consensus 38 ~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 38 NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 33444669999998867788999999999999999986655
No 50
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=24.39 E-value=1.2e+02 Score=22.43 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
.|-.||..-..+ ..+|+++..+.+ |++...+.|...-|+..|+|....
T Consensus 17 ~~~~iL~~L~~~--~~~~~~ela~~l-~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 17 VRLGIMIFLLPR--RKAPFSQIQKVL-DLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHH--SEEEHHHHHHHT-TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc--CCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 344566544333 368999988776 578899999999999999998654
No 51
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=22.24 E-value=1.3e+02 Score=22.65 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCceeeHHHHhcccCC----CCHHHHHHHHHhhhhhce
Q 016331 219 YMECRNHIVAKYMDNPEKRLIVSDCQGLVDG----VSPEDLTRIFRFLNHWGI 267 (391)
Q Consensus 219 Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G----~Dv~~I~RVh~FLE~WGL 267 (391)
|...=..+|.+-.+. .|||..+....|.. .+...|-.|+.+|+..|+
T Consensus 7 ~~~~~k~Li~~gK~~--G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 7 IERRIKKLISLGKKK--GYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHHHHHH--SSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhHc--CCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 443333466666553 48999999887764 688999999999999997
No 52
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.17 E-value=1e+02 Score=22.78 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=31.1
Q ss_pred eeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCC
Q 016331 237 RLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 237 yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
.+|+++..+.+ |++...+.|+..-|+..|||.....+
T Consensus 34 ~~s~~ela~~l-~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 34 GMRVSEIAREL-DLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 38999987766 57889999999999999999876543
No 53
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=22.12 E-value=1.5e+02 Score=22.17 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhhceeccccCC
Q 016331 253 EDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 253 ~~I~RVh~FLE~WGLINy~~~~ 274 (391)
..|..|+.|.-.||+|...+..
T Consensus 77 ~~l~~~~~~A~~~~~i~~NP~~ 98 (116)
T 2kj5_A 77 RWLKRMFNYAIKRHIIEYNPAA 98 (116)
T ss_dssp HHHHHHHHHHHHTTSCSSCGGG
T ss_pred HHHHHHHHHHHHcCccccCchh
Confidence 3678889999999999765443
No 54
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=22.03 E-value=1.3e+02 Score=23.36 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceec
Q 016331 225 HIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (391)
Q Consensus 225 ~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLIN 269 (391)
..|+.|...|...+++.++-..|.....--|.-|..=||..|||-
T Consensus 18 kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 18 KFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 456788899999999999987774214344455555689999984
No 55
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.37 E-value=1.3e+02 Score=23.29 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceecccc
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCA 272 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~ 272 (391)
.|-.||..... ..+|+++..+.+ |+.-..+.|...-|+..|||....
T Consensus 27 ~r~~IL~~L~~---~~~~~~ela~~l-~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 27 NRIRIMELLSV---SEASVGHISHQL-NLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHHH---CCBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 45566665543 347999987776 568889999999999999998764
No 56
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=20.98 E-value=1.3e+02 Score=26.45 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCC
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
-|..||..-..+|...+|+.+....+.++....|.|-..-|..-|||......
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~ 82 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVP 82 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecC
Confidence 68899999999999899999998777657889999999999999999865443
No 57
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=20.97 E-value=1.4e+02 Score=22.74 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccC
Q 016331 222 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAA 273 (391)
Q Consensus 222 iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~ 273 (391)
.|-.||..-... .+|+++..+.+ |+.-..+.+-..-|+..|||.....
T Consensus 24 ~r~~Il~~L~~~---~~~~~ela~~l-~is~~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 24 VRLMLVCTLVEG---EFSVGELEQQI-GIGQPTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp HHHHHHHHHHTC---CBCHHHHHHHH-TCCTTHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 355566655443 38999987776 5566789999999999999986543
No 58
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=20.76 E-value=1.2e+02 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.8
Q ss_pred CceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCCCCC
Q 016331 235 EKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSP 277 (391)
Q Consensus 235 ~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~~~~ 277 (391)
...+++++.++.+.|+.-..|.+...-||.-|||.-..++..+
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4568999999988778889999999999999999977776443
No 59
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=20.73 E-value=1.1e+02 Score=27.94 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceeeHHHHhcccCCCCHHHHHHHHHhhhhhcee
Q 016331 215 TPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (391)
Q Consensus 215 TPe~Yl~iRN~II~~yr~NP~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLI 268 (391)
+++.|-++++.|.+.. .+ .++|+.+.|..+.- -=....=|.+||++-|+.
T Consensus 197 ~~~~~~~~~~~l~~~~-~~--~~it~a~~Rd~lg~-SRK~aIplLE~~Dr~g~T 246 (258)
T 1lva_A 197 HRQALGEAREVIKNLA-ST--GPFGLAEARDALGS-SRKYVLPLLEYLDQVKFT 246 (258)
T ss_dssp EHHHHHHHHHHHHHHH-TT--SCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHHHHHH-hc--CCcCHHHHHHHhCC-cHHHHHHHHHHHhhcCce
No 60
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.44 E-value=1.1e+02 Score=24.45 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccc
Q 016331 234 PEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (391)
Q Consensus 234 P~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~ 271 (391)
+...+|.++....+ |+....+.||..-|.+.|||...
T Consensus 23 ~~~~~s~~ela~~~-~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 23 GEGPTSLKSIAQTN-NLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp TSCCBCHHHHHHHT-TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCCHHHHHHHH-CcCHHHHHHHHHHHHHCCceEec
Confidence 46789999987765 46888999999999999999643
No 61
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=20.38 E-value=1.3e+02 Score=24.68 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.0
Q ss_pred CceeeHHHHhcccCCCCHHHHHHHHHhhhhhceeccccCCC
Q 016331 235 EKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQ 275 (391)
Q Consensus 235 ~~yLT~T~cRr~L~G~Dv~~I~RVh~FLE~WGLINy~~~~~ 275 (391)
...+++++..+.+.|++-..|.+...=|+..|||.-..++.
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 35699999998886788899999999999999998766654
No 62
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=20.35 E-value=1.3e+02 Score=22.20 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=32.2
Q ss_pred ChHHHHH-HHHHHHHHHHhCCCceeeHHHHhcccC----CC-------CHHHHHHHHHhhhhhceeccccCC
Q 016331 215 TPEKYME-CRNHIVAKYMDNPEKRLIVSDCQGLVD----GV-------SPEDLTRIFRFLNHWGIINYCAAV 274 (391)
Q Consensus 215 TPe~Yl~-iRN~II~~yr~NP~~yLT~T~cRr~L~----G~-------Dv~~I~RVh~FLE~WGLINy~~~~ 274 (391)
|-..|.. ++++|. .+-.-+-..||..+++..+. |. -...|..++.|.-.+|+|...+..
T Consensus 21 T~~~y~~~~~~~i~-~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~~~i~~nP~~ 91 (111)
T 2kiw_A 21 SVRAREKAIQHAIE-RFNTKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSE 91 (111)
T ss_dssp HHHHHHHHHHHHHH-HTTSSCGGGCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTT
T ss_pred hHHHHHHHHHHHHH-HHCcCcHHHcCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHhCChhhCccc
Confidence 3444433 233454 33334556677776654331 11 123566778888889999755443
Done!