Query 016332
Match_columns 391
No_of_seqs 274 out of 789
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 4.9E-47 1.1E-51 385.0 24.1 245 100-388 74-363 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.1E-46 2.4E-51 357.3 12.8 220 106-335 1-243 (244)
3 KOG0799 Branching enzyme [Carb 99.9 1.7E-26 3.7E-31 237.3 14.6 215 105-327 104-350 (439)
4 cd02515 Glyco_transf_6 Glycosy 54.1 90 0.002 30.8 9.1 113 69-194 9-133 (271)
5 PF13811 DUF4186: Domain of un 37.6 14 0.00031 31.5 0.7 33 53-88 70-102 (111)
6 PF11337 DUF3139: Protein of u 34.9 31 0.00068 27.6 2.3 8 77-84 47-54 (85)
7 PF03032 Brevenin: Brevenin/es 27.1 29 0.00062 25.1 0.7 19 26-44 2-20 (46)
8 PF12273 RCR: Chitin synthesis 25.7 30 0.00066 29.8 0.8 9 32-40 2-10 (130)
9 KOG3970 Predicted E3 ubiquitin 24.8 38 0.00082 32.6 1.2 34 19-52 240-274 (299)
10 COG4459 NapE Periplasmic nitra 22.9 96 0.0021 23.5 2.8 24 21-44 10-33 (62)
11 cd06439 CESA_like_1 CESA_like_ 22.7 5.8E+02 0.013 23.2 10.8 102 100-209 25-132 (251)
12 PRK07718 fliL flagellar basal 22.5 67 0.0014 28.3 2.3 26 27-52 1-28 (142)
13 COG1954 GlpP Glycerol-3-phosph 21.9 1.2E+02 0.0026 28.1 3.8 99 107-220 25-129 (181)
14 PF05984 Cytomega_UL20A: Cytom 21.7 77 0.0017 25.9 2.3 23 28-53 2-24 (100)
15 PRK10927 essential cell divisi 21.0 1.9E+02 0.0042 29.2 5.4 45 31-75 35-79 (319)
16 PF14812 PBP1_TM: Transmembran 20.3 11 0.00024 30.4 -2.7 19 26-44 61-79 (81)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=4.9e-47 Score=384.96 Aligned_cols=245 Identities=22% Similarity=0.318 Sum_probs=184.6
Q ss_pred CCCCCcEEEEEEec-CCCChHHHHHHHHcccCCCceEEEEeCCCCCCC-----------------Cccce-eeccccccc
Q 016332 100 RSKNSKVAFLFLTP-GPLPFEKLWDKFFHGHEGRFSVYVHASRDKPVH-----------------FSRYF-INREIRSEQ 160 (391)
Q Consensus 100 ~~~~~KIAfLfLah-~~l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~~-----------------~~~~F-~~r~I~s~~ 160 (391)
...+||+||||++| |+ +++|.+++.+++++++.||||+|+|++.. ..++| .++ ...
T Consensus 74 ~~~~~r~AYLI~~h~~d--~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k---~~~ 148 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGD--LEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITK---ANL 148 (421)
T ss_pred CCCCCeEEEEEEecCCc--HHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEec---cee
Confidence 44689999999998 67 78888888889899999999999998631 11232 233 267
Q ss_pred cccCcchHHHHHHHHHHHHhc-CCCCCEEEEecCCcccCCChHH-HHHHHhc-CCCcceeeccCCCCCCCCC--------
Q 016332 161 VVWGRISMVDAERRLLANALK-DPDNQHFVLLSDSCVPLHDFDY-VYNYLMY-SNMSFIDCFEDPGPHGNGR-------- 229 (391)
Q Consensus 161 V~WG~~SlV~Ael~LL~~AL~-d~~~~yFvLLSgsd~PL~s~~~-I~~~L~~-~~~sFI~~~~~~~~~~~~R-------- 229 (391)
|.|||+|||+||+++|+.+|+ ..+|||||||||+||||+++++ |+.|+.. .++|||++....+.....|
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 999999999999999999998 4789999999999999999999 5667765 6799999875432222112
Q ss_pred --cc-cc--c---Cc-c-cc-ccccccccceEEeeHHHHHHHHhChH-HHHHHHHhhccCCCCCcccCCcchhhhhc-cc
Q 016332 230 --YS-EH--M---LP-E-VE-LKDFRKGAQWFTMKRQHALIVMADSL-YYSKFRDYCKHGVDGKNCIADEHYLPTFF-HM 296 (391)
Q Consensus 230 --Y~-~~--m---lp-~-i~-~~~~~kGSQWfsLtR~~a~~Il~d~~-~~~~F~~~~~~~~~~~t~~pDE~yf~TlL-~~ 296 (391)
|. .+ . .+ + ++ ..++++|||||+|||++|+||+...+ .-...+.|++ ++++|||+||||++ |+
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~-----~t~~pdE~fFqTVl~NS 303 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT-----NFVSSPEGYFHTVICNV 303 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh-----cCCCCchHHHHHHHhhc
Confidence 11 00 0 00 1 12 47899999999999999999996221 1122333343 36789999999999 55
Q ss_pred C-CCCCCcCCceEEEeCCCCC-CCCccccCCCCCHHHHHhhhhccccccccccccccccccccccCCCCCCCceEecCCC
Q 016332 297 I-DPGGIANRSVTHVDWSERK-WHPKSYKRSDVSYDLLKNITSVYLSEHVTSDEQRTVLMRPCLWNGIRRPCYLFARKFR 374 (391)
Q Consensus 297 ~-~~~~i~n~~lryiDWs~g~-~hP~~~~~~Di~~e~L~~ir~~~~~~~~~~~~~~~~~~~~c~~n~~~~~~~LFARKF~ 374 (391)
. +.+++.|.++|||||++++ .||++|+.+|++ .|. ++ .++|||||+
T Consensus 304 ~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D~~--~l~---~S---------------------------~~lFARKFd 351 (421)
T PLN03183 304 PEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDTE--KMI---AS---------------------------GAAFARKFR 351 (421)
T ss_pred ccccccccCCceeEEecCCCCCCCCcccCHHHHH--HHH---hC---------------------------CCccccCCC
Confidence 4 7888999999999999864 499999999983 343 21 479999999
Q ss_pred CCchHHHHHhHhhc
Q 016332 375 PDTLDNLLNLFSNY 388 (391)
Q Consensus 375 p~~~~~Ll~l~~~~ 388 (391)
. ++++|+.++..
T Consensus 352 ~--d~~vl~~Id~~ 363 (421)
T PLN03183 352 R--DDPVLDKIDKE 363 (421)
T ss_pred C--ChHHHHHHHHH
Confidence 6 45778777753
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.1e-46 Score=357.33 Aligned_cols=220 Identities=28% Similarity=0.478 Sum_probs=146.5
Q ss_pred EEEEEEecC-CCChHHHHHHHHcccCCCceEEEEeCCCCCC------------CCccceeeccccccccccCcchHHHHH
Q 016332 106 VAFLFLTPG-PLPFEKLWDKFFHGHEGRFSVYVHASRDKPV------------HFSRYFINREIRSEQVVWGRISMVDAE 172 (391)
Q Consensus 106 IAfLfLah~-~l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~------------~~~~~F~~r~I~s~~V~WG~~SlV~Ae 172 (391)
||||||+|+ + .+++.+.+..++++.+.+|||+|+|++. .+++.|... ++.|.||++|||+||
T Consensus 1 iAylil~h~~~--~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~---r~~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKND--PEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPK---RVDVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS----HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS--------TTSHHHHHHH
T ss_pred CEEEEEecCCC--HHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeeccc---ccccccCCccHHHHH
Confidence 799999988 6 5555555555567788899999999751 122223332 489999999999999
Q ss_pred HHHHHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhcC--CCcceeeccCCCCCCCCCcccc----cCcccccccccc
Q 016332 173 RRLLANALK-DPDNQHFVLLSDSCVPLHDFDYVYNYLMYS--NMSFIDCFEDPGPHGNGRYSEH----MLPEVELKDFRK 245 (391)
Q Consensus 173 l~LL~~AL~-d~~~~yFvLLSgsd~PL~s~~~I~~~L~~~--~~sFI~~~~~~~~~~~~RY~~~----mlp~i~~~~~~k 245 (391)
++||++|++ +++|+|||||||+|+||+++++|++||+.+ +.+|+++...++....+||... +.+.++..++++
T Consensus 76 l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 155 (244)
T PF02485_consen 76 LNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYK 155 (244)
T ss_dssp HHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EE
T ss_pred HHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccc
Confidence 999999999 789999999999999999999999999985 5788998876654333566543 334444458999
Q ss_pred ccceEEeeHHHHHHHHhChHHHHHHHHhhccCCCCCcccCCcchhhhhcccC--CCCCCcCCceEEEeCC-CCCCCCccc
Q 016332 246 GAQWFTMKRQHALIVMADSLYYSKFRDYCKHGVDGKNCIADEHYLPTFFHMI--DPGGIANRSVTHVDWS-ERKWHPKSY 322 (391)
Q Consensus 246 GSQWfsLtR~~a~~Il~d~~~~~~F~~~~~~~~~~~t~~pDE~yf~TlL~~~--~~~~i~n~~lryiDWs-~g~~hP~~~ 322 (391)
|||||+|||++|++|+.|....+.|+.+|+ ++++|||+||||||++. +++.+.|+++|||||+ ++++||+++
T Consensus 156 GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~ 230 (244)
T PF02485_consen 156 GSQWFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTL 230 (244)
T ss_dssp E-S--EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SS
T ss_pred cceeeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCee
Confidence 999999999999999999998899998885 37999999999999655 6788899999999999 788999999
Q ss_pred cCCCCCHHHHHhh
Q 016332 323 KRSDVSYDLLKNI 335 (391)
Q Consensus 323 ~~~Di~~e~L~~i 335 (391)
+..|++++.|++|
T Consensus 231 ~~~~~~~~d~~~~ 243 (244)
T PF02485_consen 231 TICDLGPEDLPWL 243 (244)
T ss_dssp EEEE--GGGHHHH
T ss_pred eeeeeCHHHHHhh
Confidence 9999998888765
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=237.34 Aligned_cols=215 Identities=20% Similarity=0.212 Sum_probs=163.8
Q ss_pred cEEEEEEecCCCChHHHHHHHHcccCCCceEEEEeCCCCCC-------CCccceeecccc--ccccccCcchHHHHHHHH
Q 016332 105 KVAFLFLTPGPLPFEKLWDKFFHGHEGRFSVYVHASRDKPV-------HFSRYFINREIR--SEQVVWGRISMVDAERRL 175 (391)
Q Consensus 105 KIAfLfLah~~l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~-------~~~~~F~~r~I~--s~~V~WG~~SlV~Ael~L 175 (391)
=+||+.+++|+ ++++.+.+.+.+++.+.++||+|.+++. .-..+|.+.+|. ...|.|||.|+++|.+++
T Consensus 104 ~~a~~~~v~kd--~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~c 181 (439)
T KOG0799|consen 104 PAAFLRVVYKD--YEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLNC 181 (439)
T ss_pred ceEEEEeeccc--HHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHHH
Confidence 46777778999 8888888888889999999999999862 124555554443 368999999999999999
Q ss_pred HHHHhcC-CCCCEEEEecCCcccCCChHHHHHHHhc-CCCcceeeccCCCCC--------CCCC-cccc----cCcccc-
Q 016332 176 LANALKD-PDNQHFVLLSDSCVPLHDFDYVYNYLMY-SNMSFIDCFEDPGPH--------GNGR-YSEH----MLPEVE- 239 (391)
Q Consensus 176 L~~AL~d-~~~~yFvLLSgsd~PL~s~~~I~~~L~~-~~~sFI~~~~~~~~~--------~~~R-Y~~~----mlp~i~- 239 (391)
|+.+++. .+|+||++|||+|+||+|++++.+.|.. +|.+||+.....+.. ..++ |... +.+.++
T Consensus 182 ~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp~ 261 (439)
T KOG0799|consen 182 LADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILPT 261 (439)
T ss_pred HHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCCC
Confidence 9999985 5699999999999999999999999998 899999986544311 1111 1111 111122
Q ss_pred ccccccccceEEeeHHHHHHHHhChHHHHHHHHhhccCCCCCcccCCcchhhhhcccCCCCCCcCCc--eEEEeCCCC--
Q 016332 240 LKDFRKGAQWFTMKRQHALIVMADSLYYSKFRDYCKHGVDGKNCIADEHYLPTFFHMIDPGGIANRS--VTHVDWSER-- 315 (391)
Q Consensus 240 ~~~~~kGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~~~~~~~t~~pDE~yf~TlL~~~~~~~i~n~~--lryiDWs~g-- 315 (391)
...+++||.|++|+|.+|+|++.+.. ...+.+++++ +..|||+||+|++.+.+...-.+.+ +|++.|..+
T Consensus 262 ~~ki~~Gs~~~~LsR~fv~y~i~~~~-~~~ll~~~~~-----t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~ 335 (439)
T KOG0799|consen 262 ALKLFKGSAWVSLSRAFVEYLISGNL-PRTLLMYYNN-----TYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDV 335 (439)
T ss_pred ceEEEecceeEEEeHHHHHHHhcCcc-HHHHHHHHhC-----ccCcchhhhHhhhccccCCCCcccchhhcceecccccc
Confidence 56789999999999999999998844 5677777763 7899999999999655433334445 999999872
Q ss_pred ---CCCCccccCCCC
Q 016332 316 ---KWHPKSYKRSDV 327 (391)
Q Consensus 316 ---~~hP~~~~~~Di 327 (391)
+.||+.+...|.
T Consensus 336 ~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 336 DPPKQHCHSLTVRDF 350 (439)
T ss_pred cccccCCcccccccc
Confidence 346676666664
No 4
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=54.14 E-value=90 Score=30.81 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=72.0
Q ss_pred cCCCCCCCCCCChHHHHHhhhhhhhcCCCCCCCCCCcEEEEEEecCCCChHHHHHHHHcccC------CCceEEEEeCCC
Q 016332 69 EWLPPSPVRELTDNEIASRVVIRDILNTPAVRSKNSKVAFLFLTPGPLPFEKLWDKFFHGHE------GRFSVYVHASRD 142 (391)
Q Consensus 69 ~~~~~~~~~~~~d~el~~~~~~~~~~~~~~~~~~~~KIAfLfLah~~l~~~~Lwe~~~~~~~------~~~~IYIHvD~k 142 (391)
.|+.|......=|.+++..-- .+++++||.+..|-|. ....|+.|+...+ ..-.+||-.|..
T Consensus 9 ~W~APivwegtf~~~~l~~~y----------~~~n~tIgl~vfatGk--Y~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~ 76 (271)
T cd02515 9 PWLAPIVWEGTFNPDVLDEYY----------RKQNITIGLTVFAVGK--YTEFLERFLESAEKHFMVGYRVIYYIFTDKP 76 (271)
T ss_pred CccCceeecCcCCHHHHHHHH----------HhcCCEEEEEEEEecc--HHHHHHHHHHHHHHhccCCCeeEEEEEeCCc
Confidence 688777777777777766632 5689999999999999 6679999887643 344678999976
Q ss_pred CCCCC-----ccceeeccccccccccCcchHHHHHHHHHHHH-hcCCCCCEEEEecCC
Q 016332 143 KPVHF-----SRYFINREIRSEQVVWGRISMVDAERRLLANA-LKDPDNQHFVLLSDS 194 (391)
Q Consensus 143 ~~~~~-----~~~F~~r~I~s~~V~WG~~SlV~Ael~LL~~A-L~d~~~~yFvLLSgs 194 (391)
...+. ..-+....|+ ..-.|-..||..-+.-+-... +.-...||...+...
T Consensus 77 ~~~p~v~lg~~r~~~V~~v~-~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd 133 (271)
T cd02515 77 AAVPEVELGPGRRLTVLKIA-EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVD 133 (271)
T ss_pred ccCcccccCCCceeEEEEec-cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCC
Confidence 53322 1222211222 347899999977665443322 111246666655443
No 5
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=37.61 E-value=14 Score=31.51 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=25.0
Q ss_pred CCCCCcccccCCCCcccCCCCCCCCCCChHHHHHhh
Q 016332 53 HTRGACYVFSSRGCQFEWLPPSPVRELTDNEIASRV 88 (391)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~el~~~~ 88 (391)
|+.++|- .++|...|.-++.-++||++|...=+
T Consensus 70 QHATatC---CRgCL~KWH~Ip~gr~Lt~~eq~yiv 102 (111)
T PF13811_consen 70 QHATATC---CRGCLEKWHGIPKGRELTEEEQAYIV 102 (111)
T ss_pred cCCCccc---hHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 4455432 46888899999999999999986544
No 6
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.86 E-value=31 Score=27.59 Aligned_cols=8 Identities=13% Similarity=0.464 Sum_probs=4.3
Q ss_pred CCCChHHH
Q 016332 77 RELTDNEI 84 (391)
Q Consensus 77 ~~~~d~el 84 (391)
...+++++
T Consensus 47 ~gy~e~~I 54 (85)
T PF11337_consen 47 QGYKESDI 54 (85)
T ss_pred cCCcHHHh
Confidence 34555555
No 7
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=27.14 E-value=29 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 016332 26 HLKRPMWIIVLVTMVVLFL 44 (391)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (391)
.+||+++.++++.+|++++
T Consensus 2 tlKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLSL 20 (46)
T ss_pred cchHHHHHHHHHHHcccch
Confidence 4677777777777776653
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.66 E-value=30 Score=29.82 Aligned_cols=9 Identities=22% Similarity=1.014 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 016332 32 WIIVLVTMV 40 (391)
Q Consensus 32 ~~~~~~~~~ 40 (391)
|+++++.++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 444444333
No 9
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=38 Score=32.61 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=25.8
Q ss_pred cCCCCCCC-CCCchHHHHHHHHHHHHHhhhcccCC
Q 016332 19 SGSRHRPH-LKRPMWIIVLVTMVVLFLVCAYMYPP 52 (391)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (391)
-|++.||+ .+|+.|.++++.+.++.+|.+.|-.-
T Consensus 240 ~g~s~rP~~~~~ra~fli~lgvLafi~~i~lM~rl 274 (299)
T KOG3970|consen 240 HGGSGRPQEAKKRALFLIFLGVLAFITIIMLMKRL 274 (299)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666775 47788999999988888888777544
No 10
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=22.89 E-value=96 Score=23.53 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHH
Q 016332 21 SRHRPHLKRPMWIIVLVTMVVLFL 44 (391)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~ 44 (391)
.+-.++.+|--||.+|+..++++=
T Consensus 10 ~~v~~~~~r~e~itFl~la~~l~P 33 (62)
T COG4459 10 AKVKPSEKRSEWITFLFLAFGLFP 33 (62)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHH
Confidence 445566666689998887766553
No 11
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=22.71 E-value=5.8e+02 Score=23.16 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCCCCcEEEEEEecCCC-ChHHHHHHHHcccCCC--ceEEEEeCCCCCCCCc--cceeeccccc-cccccCcchHHHHHH
Q 016332 100 RSKNSKVAFLFLTPGPL-PFEKLWDKFFHGHEGR--FSVYVHASRDKPVHFS--RYFINREIRS-EQVVWGRISMVDAER 173 (391)
Q Consensus 100 ~~~~~KIAfLfLah~~l-~~~~Lwe~~~~~~~~~--~~IYIHvD~k~~~~~~--~~F~~r~I~s-~~V~WG~~SlV~Ael 173 (391)
.+..|+++.+|.++++. .+++..+.+.+...+. +.|+|..|...+.... .-+....+.- ... ...+...|-.
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~--~~~g~~~a~n 102 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP--ERRGKAAALN 102 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC--CCCChHHHHH
Confidence 45678999999999973 3455555555443333 6888888876542100 0010000000 011 1233455655
Q ss_pred HHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHh
Q 016332 174 RLLANALKDPDNQHFVLLSDSCVPLHDFDYVYNYLM 209 (391)
Q Consensus 174 ~LL~~AL~d~~~~yFvLLSgsd~PL~s~~~I~~~L~ 209 (391)
.+++.| ..||++++-+.|+|- .+.+.+.+.
T Consensus 103 ~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 103 RALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred HHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 555554 248999999999885 455555544
No 12
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.50 E-value=67 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=17.0
Q ss_pred CCCchHHHHHHHHHHHHHhh--hcccCC
Q 016332 27 LKRPMWIIVLVTMVVLFLVC--AYMYPP 52 (391)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~--~~~~~~ 52 (391)
+||++++++++.++++.+++ +|+|--
T Consensus 1 ~kkkl~~i~~i~l~~l~~~g~~~~~~~~ 28 (142)
T PRK07718 1 MKNKLIKIMLIILIVIALIGTAALVLVM 28 (142)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 47888888877777665554 454433
No 13
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=21.91 E-value=1.2e+02 Score=28.10 Aligned_cols=99 Identities=18% Similarity=0.326 Sum_probs=53.3
Q ss_pred EEEEEecCC-CChHHHHHHHHcccCCCceEEEEeCCCCCC---CCccceeeccccccccccCcchHHHHHHHHHHHHhcC
Q 016332 107 AFLFLTPGP-LPFEKLWDKFFHGHEGRFSVYVHASRDKPV---HFSRYFINREIRSEQVVWGRISMVDAERRLLANALKD 182 (391)
Q Consensus 107 AfLfLah~~-l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~---~~~~~F~~r~I~s~~V~WG~~SlV~Ael~LL~~AL~d 182 (391)
-|+||-.++ +++..+.+++.+... .+|||+|--... ....-|....+... |= +..--+.+..|-+.
T Consensus 25 ~~vflL~~~i~~ik~ivk~lK~~gK---~vfiHvDLv~Gl~~~e~~i~fi~~~~~pd----GI---ISTk~~~i~~Akk~ 94 (181)
T COG1954 25 QYVFLLTGHILNIKEIVKKLKNRGK---TVFIHVDLVEGLSNDEVAIEFIKEVIKPD----GI---ISTKSNVIKKAKKL 94 (181)
T ss_pred eEEEEEechhhhHHHHHHHHHhCCc---EEEEEeHHhcccCCchHHHHHHHHhccCC----ee---EEccHHHHHHHHHc
Confidence 345555555 457888887776543 799999964332 22333443322110 21 22233445555543
Q ss_pred --CCCCEEEEecCCcccCCChHHHHHHHhcCCCcceeecc
Q 016332 183 --PDNQHFVLLSDSCVPLHDFDYVYNYLMYSNMSFIDCFE 220 (391)
Q Consensus 183 --~~~~yFvLLSgsd~PL~s~~~I~~~L~~~~~sFI~~~~ 220 (391)
.--+++.+|--+ +.+-..++....+-.|||..+
T Consensus 95 ~~~aIqR~FilDS~-----Al~~~~~~i~~~~pD~iEvLP 129 (181)
T COG1954 95 GILAIQRLFILDSI-----ALEKGIKQIEKSEPDFIEVLP 129 (181)
T ss_pred CCceeeeeeeecHH-----HHHHHHHHHHHcCCCEEEEcC
Confidence 235666665332 234455566667888998864
No 14
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.67 E-value=77 Score=25.87 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHHHhhhcccCCC
Q 016332 28 KRPMWIIVLVTMVVLFLVCAYMYPPH 53 (391)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (391)
.|++||+-||++.. ..|...|.|
T Consensus 2 aRRlwiLslLAVtL---tVALAAPsQ 24 (100)
T PF05984_consen 2 ARRLWILSLLAVTL---TVALAAPSQ 24 (100)
T ss_pred chhhHHHHHHHHHH---HHHhhcccc
Confidence 46788876665543 333334544
No 15
>PRK10927 essential cell division protein FtsN; Provisional
Probab=21.02 E-value=1.9e+02 Score=29.19 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCCCcccccCCCCcccCCCCCC
Q 016332 31 MWIIVLVTMVVLFLVCAYMYPPHTRGACYVFSSRGCQFEWLPPSP 75 (391)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (391)
.++++.+.++++|+-|.|.+-++....-.......-.++=||++|
T Consensus 35 ~m~alAvavlv~fiGGLyFith~k~~e~~~~~~~~~~~ngLPPKP 79 (319)
T PRK10927 35 AMVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKP 79 (319)
T ss_pred HHHHHHHHHHHHHhhheEEEecCCCCCCcccccCCCCCCCCCCCc
Confidence 477888888888888888888765432122222222335566555
No 16
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.29 E-value=11 Score=30.39 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=5.2
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 016332 26 HLKRPMWIIVLVTMVVLFL 44 (391)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (391)
+.||..|+.+|+.|.+||+
T Consensus 61 ~rkKrrwlwLlikl~lV~a 79 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLVFA 79 (81)
T ss_dssp ----------TTTTHCCHC
T ss_pred ccccchhHHHHHHHHHHhe
Confidence 5667788877777655543
Done!