Query 016332
Match_columns 391
No_of_seqs 274 out of 789
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 54.1 52 0.0038 26.7 11.2 109 104-216 1-122 (255)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 18.0 39 0.0028 20.2 2.3 22 28-49 1-23 (34)
3 d1lzia_ c.68.1.9 (A:) Glycosyl 12.7 87 0.0063 27.5 4.4 116 69-198 27-155 (283)
4 d1iioa_ a.39.4.1 (A:) Hypothet 12.3 25 0.0018 25.6 0.4 21 190-210 60-80 (84)
5 d1o7qa_ c.68.1.9 (A:) alpha-1, 11.2 82 0.006 27.7 3.7 115 69-197 21-149 (287)
6 d1r5la1 a.5.3.1 (A:25-90) Alph 10.4 19 0.0014 24.7 -0.8 18 367-384 31-48 (66)
7 d1vkfa_ c.1.29.1 (A:) Glycerol 10.2 83 0.006 25.6 3.1 100 103-220 19-124 (172)
8 d2qalc1 d.52.3.1 (C:1-105) Rib 10.0 58 0.0042 24.3 1.9 31 245-275 17-47 (105)
9 d1n26a2 b.1.2.1 (A:94-195) Int 10.0 38 0.0028 25.3 0.7 23 354-376 17-44 (102)
10 d1c9fa_ d.15.2.1 (A:) Caspase- 8.7 46 0.0034 24.2 0.7 12 282-294 56-67 (87)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=54.06 E-value=52 Score=26.66 Aligned_cols=109 Identities=9% Similarity=0.110 Sum_probs=63.8
Q ss_pred CcEEEEEEecCC-CChHHHHHHHHcccCCCceEEEEeCCCCCCCC---ccceeeccc---cccccc----cCcchHHHHH
Q 016332 104 SKVAFLFLTPGP-LPFEKLWDKFFHGHEGRFSVYVHASRDKPVHF---SRYFINREI---RSEQVV----WGRISMVDAE 172 (391)
Q Consensus 104 ~KIAfLfLah~~-l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~~~---~~~F~~r~I---~s~~V~----WG~~SlV~Ae 172 (391)
|||+.+|-+++. .-+++..+.+..-..+.+.|+|.-|...+... .......+| ...... =...+.-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 789999999875 45678888877666678899999886553100 000000000 011111 1334444455
Q ss_pred HHHHHHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhc-CCCcce
Q 016332 173 RRLLANALKDPDNQHFVLLSDSCVPLHD-FDYVYNYLMY-SNMSFI 216 (391)
Q Consensus 173 l~LL~~AL~d~~~~yFvLLSgsd~PL~s-~~~I~~~L~~-~~~sFI 216 (391)
-.+++.| ..+|+++|-+.|++..+ .+.+.+++.. .+..++
T Consensus 81 N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 81 NQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 5555555 46899999999998755 3444555654 345555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.01 E-value=39 Score=20.18 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHHH-HHHhhhcc
Q 016332 28 KRPMWIIVLVTMVV-LFLVCAYM 49 (391)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~ 49 (391)
|-|.|++..+..+. +.+++.+.
T Consensus 1 riPLWlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeee
Confidence 35899987766543 33444333
No 3
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.70 E-value=87 Score=27.46 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=57.4
Q ss_pred cCCCCCCCCCCChHHHHHhhhhhhhcCCCCCCCCCCcEEEEEEecCCCChHHHHHHHHccc------CCCceEEEEeCCC
Q 016332 69 EWLPPSPVRELTDNEIASRVVIRDILNTPAVRSKNSKVAFLFLTPGPLPFEKLWDKFFHGH------EGRFSVYVHASRD 142 (391)
Q Consensus 69 ~~~~~~~~~~~~d~el~~~~~~~~~~~~~~~~~~~~KIAfLfLah~~l~~~~Lwe~~~~~~------~~~~~IYIHvD~k 142 (391)
.|+.|.....-=|.+++.+.- .+++-.||.++.|-|. ..+.+++|.+.. +..-.+||=.|..
T Consensus 27 ~w~apivwegt~~~~~l~~~~----------~~~~~tIgl~vfATGk--Y~~Fl~~f~eSaek~Fmpg~~v~yyvFTD~~ 94 (283)
T d1lzia_ 27 PWLAPIVWEGTFNIDILNEQF----------RLQNTTIGLTVFAIKK--YVAFLKLFLETAEKHFMVGHRVHYYVFTDQP 94 (283)
T ss_dssp TTSCBEECTTSCCHHHHHHHH----------HTTTCEEEEEEEECGG--GGGGHHHHHHHHHHHBSTTSEEEEEEEESCG
T ss_pred CCcCcEeecCcCCHHHHHHHH----------hhCCceEEEEEEEeCh--HHHHHHHHHHHHHHhcCCCCeeEEEEEECCC
Confidence 899877777766777777643 4678899999999887 223444444432 2234678999975
Q ss_pred CCCCCccceeeccccc----cccccCcchHHHHHHHHH---HHHhcCCCCCEEEEecCCcccC
Q 016332 143 KPVHFSRYFINREIRS----EQVVWGRISMVDAERRLL---ANALKDPDNQHFVLLSDSCVPL 198 (391)
Q Consensus 143 ~~~~~~~~F~~r~I~s----~~V~WG~~SlV~Ael~LL---~~AL~d~~~~yFvLLSgsd~PL 198 (391)
..++.-..-.++++.- ..-.|-.+||..-+.-+- +..+. +.||++.+-....-.
T Consensus 95 ~~vP~i~l~~~~~v~v~~i~~~~~Wp~iTL~R~~~i~k~i~~~~~~--e~DyLf~~DaDm~f~ 155 (283)
T d1lzia_ 95 AAVPRVTLGTGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLS--EVDYLVCVDVDMEFR 155 (283)
T ss_dssp GGSCCCCCCTTEEEEEEECC-------------------CHHHHHH--HCSEEEEECSSEEEC
T ss_pred ccCCccccccCCceEEEeccCCCCCchHHHHHHHHHHHHHHHHhhh--cCCEEEEeecceEEe
Confidence 4433211112222211 123599888876655432 22333 578888776655443
No 4
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.33 E-value=25 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=17.8
Q ss_pred EecCCcccCCChHHHHHHHhc
Q 016332 190 LLSDSCVPLHDFDYVYNYLMY 210 (391)
Q Consensus 190 LLSgsd~PL~s~~~I~~~L~~ 210 (391)
+|+++|+|+++.+++.+-+..
T Consensus 60 ~l~~~DFP~ksae~lad~ii~ 80 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHHH
Confidence 577899999999999887653
No 5
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.25 E-value=82 Score=27.71 Aligned_cols=115 Identities=11% Similarity=0.165 Sum_probs=67.8
Q ss_pred cCCCCCCCCCCChHHHHHhhhhhhhcCCCCCCCCCCcEEEEEEecCCCChH-HHHHHHHccc------CCCceEEEEeCC
Q 016332 69 EWLPPSPVRELTDNEIASRVVIRDILNTPAVRSKNSKVAFLFLTPGPLPFE-KLWDKFFHGH------EGRFSVYVHASR 141 (391)
Q Consensus 69 ~~~~~~~~~~~~d~el~~~~~~~~~~~~~~~~~~~~KIAfLfLah~~l~~~-~Lwe~~~~~~------~~~~~IYIHvD~ 141 (391)
.|+.|.....-=|.+++.+.- ..++-+||.++.|-|. .- .-+++|.... ...-.+||=.|.
T Consensus 21 ~w~apivwegt~~~~~l~~~y----------~~~~~tIgl~vfAtgk--Y~~~Fl~~FleSaEk~Fm~g~~v~yyVFTD~ 88 (287)
T d1o7qa_ 21 KWKAPVVWEGTYNRAVLDNYY----------AKQKITVGLTVFAVGR--YIEHYLEEFLTSANKHFMVGHPVIFYIMVDD 88 (287)
T ss_dssp TTSCBEECTTSBCHHHHHHHH----------HHHTCCEEEEEEECTT--HHHHHHHHHHHHHHHHBSTTSCEEEEEEESC
T ss_pred CCcCcEeecCcCCHHHHHHHH----------hhcCceEEEEEEEeCh--hHHHHHHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 788777777766777776642 4577889999999988 43 3556655543 234577899997
Q ss_pred CCCCCCccceeecccc----ccccccCcchHHHHHHHHH---HHHhcCCCCCEEEEecCCccc
Q 016332 142 DKPVHFSRYFINREIR----SEQVVWGRISMVDAERRLL---ANALKDPDNQHFVLLSDSCVP 197 (391)
Q Consensus 142 k~~~~~~~~F~~r~I~----s~~V~WG~~SlV~Ael~LL---~~AL~d~~~~yFvLLSgsd~P 197 (391)
....+.-....+|++. ...-.|-.+||..-+.-+= +..+. +.||.+.+-..-.-
T Consensus 89 ~~~~P~i~l~~~r~~~v~~v~~~~~Wp~iTL~Rm~~i~~~i~~~~~~--e~Dylf~~DaDm~f 149 (287)
T d1o7qa_ 89 VSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQH--EVDFLFCMDVDQVF 149 (287)
T ss_dssp GGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHH--HCSEEEEECSSEEE
T ss_pred cccCCccccCCccceEEEEccccCCCchhHHHHHHHHHHHHHHhhhc--cCCeEEEEeCCceE
Confidence 5433221111111111 0234699999877665432 22222 46777776554433
No 6
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.41 E-value=19 Score=24.67 Aligned_cols=18 Identities=39% Similarity=0.390 Sum_probs=13.9
Q ss_pred ceEecCCCCCchHHHHHh
Q 016332 367 YLFARKFRPDTLDNLLNL 384 (391)
Q Consensus 367 ~LFARKF~p~~~~~Ll~l 384 (391)
||-||||+.+....+++.
T Consensus 31 FLRarkf~~~ka~~~l~~ 48 (66)
T d1r5la1 31 FLRARDFDLDLAWRLLKN 48 (66)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 899999998876655543
No 7
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Probab=10.24 E-value=83 Score=25.57 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCcEEEEEEecCC-CChHHHHHHHHcccCCCceEEEEeCCCCCCC---CccceeeccccccccccCcchHHHHHHHHHHH
Q 016332 103 NSKVAFLFLTPGP-LPFEKLWDKFFHGHEGRFSVYVHASRDKPVH---FSRYFINREIRSEQVVWGRISMVDAERRLLAN 178 (391)
Q Consensus 103 ~~KIAfLfLah~~-l~~~~Lwe~~~~~~~~~~~IYIHvD~k~~~~---~~~~F~~r~I~s~~V~WG~~SlV~Ael~LL~~ 178 (391)
...+. ||..++ ..+..+.+++.+... .+|||+|-=.... ...-|..+ + +--++|..--.+++.
T Consensus 19 ~~~~i--flL~g~I~~l~~~v~~~k~~gK---~v~VHiDLi~GL~~d~~av~flk~-~-------~~dGIISTk~~~i~~ 85 (172)
T d1vkfa_ 19 EPDVV--FLLKSDILNLKFHLKILKDRGK---TVFVDMDFVNGLGEGEEAILFVKK-A-------GADGIITIKPKNYVV 85 (172)
T ss_dssp CSSEE--EECCEETTTHHHHHHHHHHTTC---EEEEEGGGEETCCSSHHHHHHHHH-H-------TCSEEEESCHHHHHH
T ss_pred CCCEE--EEecCcHHHHHHHHHHHHHcCC---EEEEEeeecCCCCCCHHHHHHHHH-c-------CCCEEEECCHHHHHH
Confidence 33444 455555 358888888776433 6999999633321 12223321 1 122222233445555
Q ss_pred HhcCC--CCCEEEEecCCcccCCChHHHHHHHhcCCCcceeecc
Q 016332 179 ALKDP--DNQHFVLLSDSCVPLHDFDYVYNYLMYSNMSFIDCFE 220 (391)
Q Consensus 179 AL~d~--~~~yFvLLSgsd~PL~s~~~I~~~L~~~~~sFI~~~~ 220 (391)
|-+.+ --|++.++--. +.+...+.+...+-++||..+
T Consensus 86 Ak~~Gl~tIqR~FliDS~-----al~~~~~~i~~~~PD~IEiLP 124 (172)
T d1vkfa_ 86 AKKNGIPAVLRFFALDSK-----AVERGIEQIETLGVDVVEVLP 124 (172)
T ss_dssp HHHTTCCEEEEEECCSHH-----HHHHHHHHHHHHTCSEEEEES
T ss_pred HHHcCCeEEEEEEeeehH-----HHHHHHHHHhhcCCCEEEECC
Confidence 55432 35677665322 244555666666778888764
No 8
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.00 E-value=58 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=24.0
Q ss_pred cccceEEeeHHHHHHHHhChHHHHHHHHhhc
Q 016332 245 KGAQWFTMKRQHALIVMADSLYYSKFRDYCK 275 (391)
Q Consensus 245 kGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~ 275 (391)
..|.||+=.++.+++|.+|.....-..++++
T Consensus 17 ~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 17 WNSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999886544444443
No 9
>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=38 Score=25.33 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=17.2
Q ss_pred ccccccCCCC-----CCCceEecCCCCC
Q 016332 354 MRPCLWNGIR-----RPCYLFARKFRPD 376 (391)
Q Consensus 354 ~~~c~~n~~~-----~~~~LFARKF~p~ 376 (391)
.-.|.|..+. ..|+|+.|||..+
T Consensus 17 ~v~CEW~p~~~psp~t~avLlvRkf~~~ 44 (102)
T d1n26a2 17 NVVCEWGPRSTPSLTTKAVLLVRKFQNS 44 (102)
T ss_dssp CEEEEECCSSCCCTTCEEEEEEEEESSS
T ss_pred cceeeecCCCCCCCCceEEEEEEeccCC
Confidence 3458887763 4699999999655
No 10
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.67 E-value=46 Score=24.22 Aligned_cols=12 Identities=8% Similarity=0.276 Sum_probs=9.4
Q ss_pred cccCCcchhhhhc
Q 016332 282 NCIADEHYLPTFF 294 (391)
Q Consensus 282 t~~pDE~yf~TlL 294 (391)
|.+ ||.|||||=
T Consensus 56 T~V-dEeYF~tLp 67 (87)
T d1c9fa_ 56 TEV-TDDCFPGLP 67 (87)
T ss_dssp CCB-CTTSCSSCC
T ss_pred cEe-cHHHHhcCC
Confidence 445 888999984
Done!