BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016335
         (391 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
 pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
 pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
          Length = 623

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 182 DLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPD 241
           DL   FG+ +   ++  T WS   I R+ +T     +    +LD+   ++V     Q+  
Sbjct: 211 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW 270

Query: 242 GMCGLSDIGGH----IMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVV 297
             C  S+  GH     + VPV GF V  C       A  R  + P  F          ++
Sbjct: 271 NECASSN--GHCSHLCLAVPVGGF-VCGCPAHYSLNADNRTCSAPTTF----------LL 317

Query: 298 FSTTRLVEKIVI 309
           FS    + ++VI
Sbjct: 318 FSQKSAINRMVI 329


>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
          Length = 628

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 182 DLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPD 241
           DL   FG+ +   ++  T WS   I R+ +T     +    +LD+   ++V     Q+  
Sbjct: 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW 265

Query: 242 GMCGLSDIGGH----IMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVV 297
             C  S+  GH     + VPV GF V  C       A  R  + P  F          ++
Sbjct: 266 NECASSN--GHCSHLCLAVPVGGF-VCGCPAHYSLNADNRTCSAPTTF----------LL 312

Query: 298 FSTTRLVEKIVI 309
           FS    + ++VI
Sbjct: 313 FSQKSAINRMVI 324


>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
           Binding To Lrp56.
 pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
           Binding To Lrp56
          Length = 629

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 182 DLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPD 241
           DL   FG+ +   ++  T WS   I R+ +T     +    +LD+   ++V     Q+  
Sbjct: 204 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW 263

Query: 242 GMCGLSDIGGH----IMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVV 297
             C  S+  GH     + VPV GF V  C       A  R  + P  F          ++
Sbjct: 264 NECASSN--GHCSHLCLAVPVGGF-VCGCPAHYSLNADNRTCSAPTTF----------LL 310

Query: 298 FSTTRLVEKIVI 309
           FS    + ++VI
Sbjct: 311 FSQKSAINRMVI 322


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,533,694
Number of Sequences: 62578
Number of extensions: 470478
Number of successful extensions: 864
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 4
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)