BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016335
         (391 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K174|TMM60_MOUSE Transmembrane protein 60 OS=Mus musculus GN=Tmem60 PE=2 SV=1
          Length = 133

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 24  LLLVLKLDHVISYSWWIVFFPVWIFHAVV---------ARGRFSLPAPSVPHNRHWAPCH 74
           ++LVLKLD    ++W+++F PVWIF  ++          R +         HN       
Sbjct: 21  IMLVLKLDEKAPWNWFLIFIPVWIFDTILLVMLIVKMAGRCKSGFDPRHGSHNIK-KKAW 79

Query: 75  AIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLA 115
            ++A  L +AF L LC  LE      F  +NL  VF+PL A
Sbjct: 80  YLIAMLLKLAFCLALCAKLEQ-----FTTMNLSYVFIPLWA 115


>sp|Q9H2L4|TMM60_HUMAN Transmembrane protein 60 OS=Homo sapiens GN=TMEM60 PE=2 SV=1
          Length = 133

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 24  LLLVLKLDHVISYSWWIVFFPVWIFHAVV---------ARGRFSLPAPSVPHNRHWAPCH 74
           ++LVLKLD    ++W+++F PVWIF  ++          R +         HN       
Sbjct: 21  IMLVLKLDEKAPWNWFLIFIPVWIFDTILLVLLIVKMAGRCKSGFDPRHGSHNIK-KKAW 79

Query: 75  AIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLA 115
            ++A  L +AF L LC  LE      F  +NL  VF+PL A
Sbjct: 80  YLIAMLLKLAFCLALCAKLEQ-----FTTMNLSYVFIPLWA 115


>sp|Q5VWK5|IL23R_HUMAN Interleukin-23 receptor OS=Homo sapiens GN=IL23R PE=1 SV=3
          Length = 629

 Score = 35.0 bits (79), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 201 WSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSA 234
           WS+   H++P+T P  +S A  +  WNSGL V++
Sbjct: 307 WSSLFFHKTPETVPQVTSKAFQHDTWNSGLTVAS 340


>sp|Q7KWT1|T185L_DICDI Transmembrane protein 185-like OS=Dictyostelium discoideum
           GN=DDB_G0276293 PE=3 SV=1
          Length = 490

 Score = 33.1 bits (74), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 3   WRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHA 50
           WR V   +Q +   S++  FT+ + L +D  I +S+WI+F PV++  A
Sbjct: 180 WRIVGSILQIIGLSSIV--FTIFIGLYIDGYIDWSYWILFIPVYVILA 225


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.142    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,470,370
Number of Sequences: 539616
Number of extensions: 6383918
Number of successful extensions: 14702
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14673
Number of HSP's gapped (non-prelim): 33
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)