Query 016335
Match_columns 391
No_of_seqs 200 out of 252
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m06_J J protein, small core p 9.1 83 0.0028 19.8 0.3 19 348-366 7-25 (26)
2 1gff_3 Bacteriophage G4 capsid 7.8 75 0.0026 19.9 -0.2 18 348-365 8-25 (26)
3 3sjd_D Golgi to ER traffic pro 4.9 2E+02 0.0068 20.5 0.6 12 348-359 13-24 (46)
4 3zs9_C Golgi to ER traffic pro 4.9 2.2E+02 0.0074 19.6 0.7 12 348-359 3-14 (38)
5 2oy9_A UPF0223 protein BH2638; 4.7 1.8E+02 0.0062 23.9 0.3 19 350-368 54-74 (98)
6 1loi_A Cyclic 3',5'-AMP specif 4.7 2.2E+02 0.0076 17.6 0.6 17 329-345 5-21 (26)
7 4fqj_A Hemagglutinin; monoclon 4.6 2.3E+02 0.0078 27.7 1.0 29 339-367 155-183 (304)
8 2rft_A Influenza B hemagglutin 3.9 2.8E+02 0.0095 27.5 1.0 30 337-366 181-210 (344)
9 4dny_A Metalloprotease STCE; m 3.9 3E+02 0.01 23.5 1.1 26 348-373 71-97 (126)
10 2vo9_A EAD500, L-alanyl-D-glut 3.7 3.2E+02 0.011 24.0 1.1 14 350-363 63-76 (179)
No 1
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=9.07 E-value=83 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.248 Sum_probs=14.7
Q ss_pred CCChhhhhhhhccCCCCcc
Q 016335 348 EGSREDQARLVHENSSGLV 366 (391)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (391)
.+||..-|||.|-|.+-|.
T Consensus 7 s~~r~kgarlwyvggtq~~ 25 (26)
T 1m06_J 7 SPSRRKGARLWYVGGSQFX 25 (26)
T ss_dssp CCCCCSSSCCCCSSSCCC-
T ss_pred CCCcCCceEEEEEcceEec
Confidence 3677888999999888764
No 2
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=7.79 E-value=75 Score=19.89 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.1
Q ss_pred CCChhhhhhhhccCCCCc
Q 016335 348 EGSREDQARLVHENSSGL 365 (391)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ 365 (391)
.+||..-|||.|-|.+-|
T Consensus 8 s~~r~kgarlwyvggtq~ 25 (26)
T 1gff_3 8 SGGKSKGARLWYVGGTQY 25 (26)
T ss_pred CCCCCCceEEEEecceec
Confidence 367888899999887755
No 3
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=4.90 E-value=2e+02 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=8.4
Q ss_pred CCChhhhhhhhc
Q 016335 348 EGSREDQARLVH 359 (391)
Q Consensus 348 ~~~~~~~~~~~~ 359 (391)
|-|.+|||||.-
T Consensus 13 ~lsa~EkaRLrR 24 (46)
T 3sjd_D 13 ELTEAEKRRLLR 24 (46)
T ss_dssp --CHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 567899999864
No 4
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=4.87 E-value=2.2e+02 Score=19.63 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.0
Q ss_pred CCChhhhhhhhc
Q 016335 348 EGSREDQARLVH 359 (391)
Q Consensus 348 ~~~~~~~~~~~~ 359 (391)
|=|.+|||||.-
T Consensus 3 els~~ekaRlrR 14 (38)
T 3zs9_C 3 ELTEAEKRRLLR 14 (38)
T ss_dssp -CCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 668899999864
No 5
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=4.67 E-value=1.8e+02 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=11.6
Q ss_pred Chhhhhhhh--ccCCCCccee
Q 016335 350 SREDQARLV--HENSSGLVYI 368 (391)
Q Consensus 350 ~~~~~~~~~--~~~~~~~~~~ 368 (391)
|+-||.+|+ ++..|||+.+
T Consensus 54 sKsEEKql~reFE~~SGYS~Y 74 (98)
T 2oy9_A 54 SKSEEKQLFRAYEQENDVSCY 74 (98)
T ss_dssp CHHHHHHHHHHHHTTSSCCHH
T ss_pred CHHHHHHHHHHHHHHhCCcHH
Confidence 555666665 4566777653
No 6
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=4.65 E-value=2.2e+02 Score=17.65 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=10.4
Q ss_pred chhhhccccccccccee
Q 016335 329 DCFGFLHRGSRLLGWWS 345 (391)
Q Consensus 329 ~~~~~~~~~~~~~~~~~ 345 (391)
|+|-.-..---|.|||.
T Consensus 5 dffcetcskpwlvgwwd 21 (26)
T 1loi_A 5 DFFCETCSKPWLVGWWD 21 (26)
T ss_dssp HHHHHTSSCTTGGGGHH
T ss_pred HHHHHhcCCchhhhhHH
Confidence 34444445566889993
No 7
>4fqj_A Hemagglutinin; monoclonal, immunoglobulin, viral protein-immune system COMP; HET: NAG BMA; 2.50A {Influenza b virus}
Probab=4.64 E-value=2.3e+02 Score=27.66 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=21.1
Q ss_pred ccccceecCCCChhhhhhhhccCCCCcce
Q 016335 339 RLLGWWSIDEGSREDQARLVHENSSGLVY 367 (391)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (391)
-.|-=|-|--.+.+||.+||+.+++++-|
T Consensus 155 d~L~iWGIHh~~~~eq~~LY~~~~~~~~t 183 (304)
T 4fqj_A 155 DQITVWGFHSDDKTQMKNLYGDSNPQKFT 183 (304)
T ss_dssp EEEEEEEEEECCHHHHHHHSSCCSCCEEE
T ss_pred ceEEEEeecCCcHHHHHHHHhcCCCeEEE
Confidence 34555778778889999999877766433
No 8
>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A*
Probab=3.91 E-value=2.8e+02 Score=27.48 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=21.8
Q ss_pred ccccccceecCCCChhhhhhhhccCCCCcc
Q 016335 337 GSRLLGWWSIDEGSREDQARLVHENSSGLV 366 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (391)
|.-.|-=|-|-..+..||..||..++..|.
T Consensus 181 ~~d~L~iWGiHhp~~~eQ~~LY~~~~~~~~ 210 (344)
T 2rft_A 181 GEDQITVWGFHSDDETQMVKLYGDSKPQKF 210 (344)
T ss_dssp TCEEEEEEEEEECCHHHHHHHSSCCSCCEE
T ss_pred CCceEEEEecCCCCHHHHHHHhccCCccEE
Confidence 333455688888899999999997764443
No 9
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=3.90 E-value=3e+02 Score=23.47 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCChh-hhhhhhccCCCCcceeeeccC
Q 016335 348 EGSRE-DQARLVHENSSGLVYILHLSG 373 (391)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 373 (391)
|...| |..+.+.+.++||++-.+|++
T Consensus 71 P~~~~~~gK~V~~~S~AgY~S~V~y~~ 97 (126)
T 4dny_A 71 PQGPDLEGKMVRFVSSAGYSSTVFYGD 97 (126)
T ss_dssp CCSGGGTTCEEEEEEECSSCEEEEETT
T ss_pred CCCcccCCCEEEEEEecCccEEEEECC
Confidence 55677 889999999999999999985
No 10
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=3.70 E-value=3.2e+02 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.5
Q ss_pred ChhhhhhhhccCCC
Q 016335 350 SREDQARLVHENSS 363 (391)
Q Consensus 350 ~~~~~~~~~~~~~~ 363 (391)
|.|||.+||..+.+
T Consensus 63 s~~~Q~~Ly~~~~~ 76 (179)
T 2vo9_A 63 STAEQNALYAQGRT 76 (179)
T ss_dssp CHHHHHHHHHBTTT
T ss_pred CHHHHHHHHHHhcc
Confidence 78999999977644
Done!