Query 016335
Match_columns 391
No_of_seqs 200 out of 252
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 11:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016335.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016335hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 11.0 1.1E+02 0.0083 18.2 3.1 22 281-302 7-28 (32)
2 d1qled_ f.23.8.1 (D:) Bacteria 6.5 3.3E+02 0.024 17.5 4.8 24 146-169 15-40 (43)
3 d1m56d_ f.23.8.1 (D:) Bacteria 6.4 3.2E+02 0.023 17.5 4.0 24 146-169 14-39 (42)
4 d2oy9a1 a.276.1.1 (A:6-90) Unc 6.0 62 0.0045 24.1 0.3 20 349-368 48-69 (85)
5 d1ctda_ a.39.1.5 (A:) Troponin 4.9 1.1E+02 0.0082 18.8 0.9 17 350-366 2-21 (34)
6 d2gxfa1 d.17.4.22 (A:1-128) Hy 4.3 1E+02 0.0074 22.3 0.5 8 335-342 121-128 (128)
7 d2vo9a1 d.65.1.5 (A:1-148) L-a 4.1 1.5E+02 0.011 23.0 1.4 17 349-365 50-66 (148)
8 d1jsda_ b.19.1.2 (A:) Hemagglu 4.0 1.5E+02 0.011 26.7 1.6 29 340-369 166-195 (317)
9 d2ah2a2 b.68.1.1 (A:1-399) Try 4.0 1.1E+02 0.0081 27.3 0.5 31 339-369 316-346 (399)
10 d1n1ea1 a.100.1.6 (A:198-357) 3.8 75 0.0055 25.3 -0.7 25 352-376 42-66 (160)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.04 E-value=1.1e+02 Score=18.23 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 016335 281 LPVLFSPLFLLQGVGVVFSTTR 302 (391)
Q Consensus 281 ~~~Vf~PLfil~~~~v~f~~~~ 302 (391)
++.||+.+|.-..+++.|+...
T Consensus 7 fyivfialffgiavgiifaiks 28 (32)
T d2e74e1 7 FYIVFIALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhheeeEEE
Confidence 5678899999888899988653
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.48 E-value=3.3e+02 Score=17.47 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=11.9
Q ss_pred hhhhHHHHHH--HHHHHHHHHhhhhh
Q 016335 146 EALPHFWVAI--SMVFFVAATVFTLL 169 (391)
Q Consensus 146 ~~~~~F~i~i--~~~~ll~~~IfLaL 169 (391)
+++++|--+. ..+..++++||+|+
T Consensus 15 kTF~gFi~~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 15 ATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556662222 22234556777775
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.39 E-value=3.2e+02 Score=17.50 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=11.8
Q ss_pred hhhhHHHHHH--HHHHHHHHHhhhhh
Q 016335 146 EALPHFWVAI--SMVFFVAATVFTLL 169 (391)
Q Consensus 146 ~~~~~F~i~i--~~~~ll~~~IfLaL 169 (391)
++++.|--+. ..+..++++||+|+
T Consensus 14 KTF~gFik~~t~~~i~~i~~liflAi 39 (42)
T d1m56d_ 14 KTFAGFVRMVTWAAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455552222 22334556777775
No 4
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=6.01 E-value=62 Score=24.10 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=13.3
Q ss_pred CChhhhhhhh--ccCCCCccee
Q 016335 349 GSREDQARLV--HENSSGLVYI 368 (391)
Q Consensus 349 ~~~~~~~~~~--~~~~~~~~~~ 368 (391)
.|+-||.+|. +.+.|||+.+
T Consensus 48 psK~eEKql~reFe~~SGYS~Y 69 (85)
T d2oy9a1 48 PSKSEEKQLFRAYEQENDVSCY 69 (85)
T ss_dssp CCHHHHHHHHHHHHTTSSCCHH
T ss_pred CChHHHHHHHHHHHHhcCCcHH
Confidence 3566677765 4577888764
No 5
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.86 E-value=1.1e+02 Score=18.80 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=11.8
Q ss_pred Chhhhh---hhhccCCCCcc
Q 016335 350 SREDQA---RLVHENSSGLV 366 (391)
Q Consensus 350 ~~~~~~---~~~~~~~~~~~ 366 (391)
|.||-| |.+-.|+.||-
T Consensus 2 sEeELae~FRifDkNaDGyi 21 (34)
T d1ctda_ 2 SEEELANAFRIFDKNADGYI 21 (34)
T ss_dssp HHHHHHHHHHTTCCSSSSCB
T ss_pred CHHHHHHHHHHHccCCcccc
Confidence 455555 67788888884
No 6
>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}
Probab=4.34 E-value=1e+02 Score=22.34 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=5.6
Q ss_pred cccccccc
Q 016335 335 HRGSRLLG 342 (391)
Q Consensus 335 ~~~~~~~~ 342 (391)
||||+|+|
T Consensus 121 ~~~~~~~~ 128 (128)
T d2gxfa1 121 SYGTDLIG 128 (128)
T ss_dssp TTGGGGTC
T ss_pred CCCchhcC
Confidence 67777765
No 7
>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]}
Probab=4.09 E-value=1.5e+02 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=12.8
Q ss_pred CChhhhhhhhccCCCCc
Q 016335 349 GSREDQARLVHENSSGL 365 (391)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ 365 (391)
-|.|||.+||..+-+.|
T Consensus 50 Rs~~~Q~~l~~~g~~~~ 66 (148)
T d2vo9a1 50 RSTAEQNALYAQGRTKP 66 (148)
T ss_dssp CCHHHHHHHHHBTTTBS
T ss_pred cCHHHHHHHHHhhcccC
Confidence 37899999998765544
No 8
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=4.03 E-value=1.5e+02 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=21.4
Q ss_pred cccceec-CCCChhhhhhhhccCCCCcceee
Q 016335 340 LLGWWSI-DEGSREDQARLVHENSSGLVYIL 369 (391)
Q Consensus 340 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 369 (391)
.|-=|-| -+++..||..||.. +++|.+--
T Consensus 166 ~L~iWGvHHP~t~~EQ~~LY~~-~~~~v~V~ 195 (317)
T d1jsda_ 166 ILFMWGINHPPTDTVQTNLYTR-TDTTTSVT 195 (317)
T ss_dssp EEEEEEEEECSSHHHHHHHHSC-SCCCEEEE
T ss_pred EEEEeeecCCCCHHHHHHHhcc-CCccEEEE
Confidence 3444777 89999999999955 47776643
No 9
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=3.97 E-value=1.1e+02 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.8
Q ss_pred ccccceecCCCChhhhhhhhccCCCCcceee
Q 016335 339 RLLGWWSIDEGSREDQARLVHENSSGLVYIL 369 (391)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (391)
++..|.|-|++.........+++.+||++..
T Consensus 316 ~l~l~~Sdd~g~~w~~~~~i~~g~saYS~L~ 346 (399)
T d2ah2a2 316 RLNLWLTDNQRIYNVGQVSIGDENSAYSSVL 346 (399)
T ss_dssp CEEEEEESSSCEEEEEECSCTTCBCCCEEEE
T ss_pred ceEEEEeCCCCccccCceEecCCCccccEeE
Confidence 5888999999988888888889999999974
No 10
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=3.84 E-value=75 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhhhhhccCCCCcceeeeccCCcc
Q 016335 352 EDQARLVHENSSGLVYILHLSGLGD 376 (391)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
+|-.|+..+-..-.+||-+++|+||
T Consensus 42 ~Em~~~~~~~g~~~~t~~~laGlGD 66 (160)
T d1n1ea1 42 LEIRDLTAALGGDGSAVFGLAGLGD 66 (160)
T ss_dssp HHHHHHHHHTTCCSTTTTSTTTHHH
T ss_pred HHHHHHHHHhCCCccceeccccchh
Done!