BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016336
         (391 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
 pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
 pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
           Albicans
          Length = 485

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 285 ELGSEFNRRHSASHLVAQRALARLKDKWKIIQGVMWRPDKHKLPRIILVCCLLHNIVIDL 344
           E+G  F  +  A  L+A++   +L ++ K I       DK+   +I  V  ++H  V+D 
Sbjct: 62  EIGKRFKAKEDAKDLIAEKE--KLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDS 119

Query: 345 EDEMQDEI 352
           +DE  +E+
Sbjct: 120 QDEENNEL 127


>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
          Length = 485

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 285 ELGSEFNRRHSASHLVAQRALARLKDKWKIIQGVMWRPDKHKLPRIILVCCLLHNIVIDL 344
           E+G  F  +  A  L+A++   +L ++ K I       DK+   +I  V  ++H  V+D 
Sbjct: 62  EIGKRFKAKEDAKDLIAEKE--KLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDS 119

Query: 345 EDEMQDEI 352
           +DE  +E+
Sbjct: 120 QDEENNEL 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,867,843
Number of Sequences: 62578
Number of extensions: 492750
Number of successful extensions: 900
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 3
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)