Query 016336
Match_columns 391
No_of_seqs 250 out of 1780
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 95.8 0.0023 7.9E-08 42.0 0.9 42 90-132 3-44 (51)
2 2glo_A Brinker CG9653-PA; prot 94.8 0.0075 2.6E-07 41.7 1.0 44 90-134 3-50 (59)
3 2w7n_A TRFB transcriptional re 94.8 0.014 4.8E-07 45.2 2.5 60 61-138 4-63 (101)
4 1jhg_A Trp operon repressor; c 94.4 0.0057 1.9E-07 47.4 -0.6 46 92-138 35-86 (101)
5 1jko_C HIN recombinase, DNA-in 93.4 0.017 5.7E-07 38.1 0.4 40 92-132 5-44 (52)
6 1tty_A Sigma-A, RNA polymerase 93.2 0.042 1.4E-06 41.1 2.4 48 92-139 18-68 (87)
7 2jn6_A Protein CGL2762, transp 92.9 0.032 1.1E-06 42.5 1.4 43 91-133 4-47 (97)
8 1ku3_A Sigma factor SIGA; heli 92.9 0.051 1.7E-06 39.1 2.4 48 91-138 9-59 (73)
9 2p7v_B Sigma-70, RNA polymeras 92.9 0.033 1.1E-06 39.4 1.3 48 92-139 5-55 (68)
10 2o8x_A Probable RNA polymerase 92.6 0.054 1.8E-06 38.2 2.2 48 92-140 15-62 (70)
11 3hug_A RNA polymerase sigma fa 92.1 0.074 2.5E-06 40.1 2.4 48 92-140 37-84 (92)
12 1wy3_A Villin; structural prot 91.9 0.078 2.7E-06 32.4 1.9 22 52-73 2-23 (35)
13 3t72_q RNA polymerase sigma fa 91.6 0.091 3.1E-06 40.5 2.5 49 92-140 19-70 (99)
14 1und_A Advillin, P92; actin bi 91.2 0.1 3.4E-06 32.4 1.9 23 51-73 3-25 (37)
15 1j1v_A Chromosomal replication 91.2 0.056 1.9E-06 41.2 0.9 50 89-138 26-76 (94)
16 1u78_A TC3 transposase, transp 90.7 0.076 2.6E-06 43.0 1.3 43 90-133 4-46 (141)
17 2elh_A CG11849-PA, LD40883P; s 90.3 0.084 2.9E-06 39.4 1.1 44 91-135 21-64 (87)
18 2x48_A CAG38821; archeal virus 90.0 0.047 1.6E-06 36.7 -0.4 37 95-132 18-54 (55)
19 1fse_A GERE; helix-turn-helix 89.5 0.16 5.5E-06 36.1 2.1 46 91-138 10-55 (74)
20 1pdn_C Protein (PRD paired); p 89.4 0.13 4.6E-06 40.5 1.8 43 91-134 16-58 (128)
21 1k78_A Paired box protein PAX5 89.3 0.15 5.1E-06 41.9 2.0 45 90-135 30-74 (149)
22 3pvv_A Chromosomal replication 89.1 0.1 3.6E-06 40.3 0.8 50 90-139 31-80 (101)
23 1s7o_A Hypothetical UPF0122 pr 88.9 0.19 6.6E-06 39.6 2.3 49 92-141 22-70 (113)
24 1iuf_A Centromere ABP1 protein 88.6 0.23 7.8E-06 40.8 2.7 47 89-135 8-62 (144)
25 1rp3_A RNA polymerase sigma fa 88.1 0.23 7.9E-06 43.7 2.6 50 91-141 186-235 (239)
26 1or7_A Sigma-24, RNA polymeras 88.0 0.25 8.5E-06 42.1 2.7 52 92-144 140-191 (194)
27 1je8_A Nitrate/nitrite respons 88.0 0.17 5.9E-06 37.2 1.4 45 91-137 20-64 (82)
28 2q1z_A RPOE, ECF SIGE; ECF sig 87.6 0.56 1.9E-05 39.4 4.7 48 92-140 135-182 (184)
29 1hlv_A CENP-B, major centromer 87.5 0.28 9.4E-06 39.3 2.5 48 90-137 5-53 (131)
30 3c57_A Two component transcrip 87.3 0.23 8E-06 37.6 1.8 47 91-139 26-72 (95)
31 2jrt_A Uncharacterized protein 87.2 0.24 8.3E-06 37.7 1.8 44 90-133 30-73 (95)
32 2jpc_A SSRB; DNA binding prote 87.1 0.18 6.1E-06 34.4 1.0 32 106-137 10-41 (61)
33 2k27_A Paired box protein PAX- 86.4 0.16 5.5E-06 42.3 0.5 43 90-133 23-65 (159)
34 1x3u_A Transcriptional regulat 85.9 0.25 8.5E-06 35.6 1.2 43 93-137 17-59 (79)
35 3hot_A Transposable element ma 85.5 6.9 0.00023 36.3 11.5 170 53-231 29-220 (345)
36 2rnj_A Response regulator prot 85.5 0.24 8.3E-06 37.1 1.0 45 91-137 28-72 (91)
37 1xsv_A Hypothetical UPF0122 pr 84.9 0.48 1.6E-05 37.2 2.6 49 92-141 25-73 (113)
38 1qzp_A Dematin; villin headpie 84.9 0.43 1.5E-05 33.8 2.0 23 51-73 34-56 (68)
39 1p4w_A RCSB; solution structur 84.7 0.6 2.1E-05 35.7 2.9 46 91-138 33-78 (99)
40 2rn7_A IS629 ORFA; helix, all 84.4 0.14 4.9E-06 39.6 -0.8 42 91-132 5-53 (108)
41 3frw_A Putative Trp repressor 83.5 0.37 1.3E-05 37.3 1.3 27 104-130 53-79 (107)
42 1yu8_X Villin; alpha helix, 3- 82.2 0.49 1.7E-05 33.4 1.4 24 51-74 33-56 (67)
43 1u78_A TC3 transposase, transp 81.6 1.9 6.4E-05 34.4 5.0 77 52-132 24-102 (141)
44 3ulq_B Transcriptional regulat 81.3 0.58 2E-05 35.1 1.6 45 91-137 28-72 (90)
45 3mzy_A RNA polymerase sigma-H 81.2 0.53 1.8E-05 38.5 1.5 48 92-141 109-156 (164)
46 2k6m_S Supervillin; SVHP, HP, 80.9 0.5 1.7E-05 33.4 1.0 23 51-73 33-55 (67)
47 1l0o_C Sigma factor; bergerat 78.4 0.42 1.5E-05 41.9 0.0 44 92-136 198-241 (243)
48 1zyb_A Transcription regulator 78.1 1.3 4.4E-05 38.7 3.1 82 51-134 122-211 (232)
49 1ujs_A Actin-binding LIM prote 76.0 0.7 2.4E-05 34.4 0.6 27 51-77 48-74 (88)
50 3ech_A MEXR, multidrug resista 75.4 2.7 9.2E-05 33.5 4.1 44 92-135 34-77 (142)
51 2lfw_A PHYR sigma-like domain; 74.4 0.65 2.2E-05 38.4 0.1 51 91-142 92-142 (157)
52 3kor_A Possible Trp repressor; 74.3 0.7 2.4E-05 36.5 0.3 34 96-130 63-96 (119)
53 1zx4_A P1 PARB, plasmid partit 73.8 1.1 3.7E-05 38.7 1.3 42 91-132 6-47 (192)
54 1zs4_A Regulatory protein CII; 73.6 1.3 4.4E-05 32.7 1.5 36 99-135 15-50 (83)
55 2l1p_A DNA-binding protein SAT 71.9 0.97 3.3E-05 33.0 0.5 33 99-131 22-54 (83)
56 2a6h_F RNA polymerase sigma fa 70.1 2.2 7.4E-05 41.6 2.7 47 92-138 360-409 (423)
57 1l9z_H Sigma factor SIGA; heli 70.0 1.9 6.4E-05 42.2 2.2 47 92-138 375-424 (438)
58 2d1h_A ST1889, 109AA long hypo 69.7 1.5 5E-05 33.1 1.1 28 107-134 34-61 (109)
59 3la7_A Global nitrogen regulat 68.6 1.2 4.3E-05 39.2 0.6 82 52-135 124-219 (243)
60 3iyd_F RNA polymerase sigma fa 68.6 2.8 9.7E-05 42.8 3.3 49 91-139 549-600 (613)
61 3mky_B Protein SOPB; partition 66.4 1.8 6.1E-05 37.1 1.1 41 91-131 22-64 (189)
62 2heo_A Z-DNA binding protein 1 66.1 1.6 5.6E-05 30.5 0.7 38 96-133 12-49 (67)
63 1uxc_A FRUR (1-57), fructose r 65.3 0.75 2.6E-05 32.2 -1.3 21 111-131 2-22 (65)
64 2qvo_A Uncharacterized protein 65.3 1.4 4.9E-05 32.9 0.2 26 110-135 31-56 (95)
65 3dv8_A Transcriptional regulat 65.2 1.8 6.2E-05 37.1 0.9 66 92-157 145-218 (220)
66 2cob_A LCOR protein; MLR2, KIA 64.9 1.8 6.1E-05 30.7 0.6 37 94-130 14-51 (70)
67 2lkp_A Transcriptional regulat 64.5 3.8 0.00013 31.7 2.7 28 108-135 44-71 (119)
68 1qgp_A Protein (double strande 64.4 1.8 6.2E-05 31.3 0.6 38 96-133 16-55 (77)
69 2pij_A Prophage PFL 6 CRO; tra 63.6 1.2 4.2E-05 30.7 -0.4 25 105-130 10-34 (67)
70 3ryp_A Catabolite gene activat 63.4 2.4 8.1E-05 36.0 1.3 43 92-134 137-192 (210)
71 2cw1_A SN4M; lambda CRO fold, 62.8 1.2 4.2E-05 31.2 -0.6 21 110-130 14-34 (65)
72 4dyq_A Gene 1 protein; GP1, oc 62.6 1.6 5.4E-05 35.6 0.0 36 97-132 16-52 (140)
73 2x4h_A Hypothetical protein SS 61.8 2.7 9.3E-05 33.5 1.3 39 97-135 16-57 (139)
74 3fx3_A Cyclic nucleotide-bindi 61.8 2.6 9E-05 36.6 1.3 65 91-156 150-225 (237)
75 3b02_A Transcriptional regulat 61.5 3.5 0.00012 34.7 2.0 65 92-156 109-187 (195)
76 2fbh_A Transcriptional regulat 61.2 3.5 0.00012 32.7 1.9 39 96-134 39-77 (146)
77 2l8n_A Transcriptional repress 61.2 0.89 3.1E-05 32.0 -1.5 22 110-131 10-31 (67)
78 2oz6_A Virulence factor regula 60.7 2.8 9.7E-05 35.4 1.3 43 92-134 134-189 (207)
79 2pg4_A Uncharacterized protein 60.4 3 0.0001 31.0 1.2 27 109-135 30-57 (95)
80 1oyi_A Double-stranded RNA-bin 60.4 1.6 5.6E-05 32.0 -0.2 39 93-133 16-54 (82)
81 1r1u_A CZRA, repressor protein 60.2 4.7 0.00016 30.6 2.4 29 107-135 37-65 (106)
82 4aik_A Transcriptional regulat 60.1 3.1 0.00011 34.0 1.4 42 93-134 29-71 (151)
83 3bja_A Transcriptional regulat 60.1 9.5 0.00032 29.8 4.4 43 92-135 30-73 (139)
84 2zcw_A TTHA1359, transcription 60.1 3.3 0.00011 35.0 1.7 65 92-156 116-194 (202)
85 3r0a_A Putative transcriptiona 60.0 2.4 8.2E-05 33.5 0.7 26 110-135 43-68 (123)
86 2ao9_A Phage protein; structur 59.7 2.9 9.9E-05 34.7 1.1 54 92-145 23-87 (155)
87 3clo_A Transcriptional regulat 59.7 3.3 0.00011 37.1 1.7 46 91-138 196-241 (258)
88 3iwz_A CAP-like, catabolite ac 59.7 3.4 0.00012 35.6 1.7 43 92-134 157-212 (230)
89 1qbj_A Protein (double-strande 59.6 3.3 0.00011 30.3 1.3 37 96-132 12-50 (81)
90 1ku9_A Hypothetical protein MJ 59.6 2.4 8.3E-05 33.9 0.6 37 96-133 28-65 (152)
91 2fmy_A COOA, carbon monoxide o 59.0 2.1 7.1E-05 36.9 0.1 44 92-135 136-193 (220)
92 1r71_A Transcriptional repress 59.0 3.2 0.00011 35.3 1.3 40 91-130 34-73 (178)
93 3k0l_A Repressor protein; heli 58.9 5.5 0.00019 32.5 2.8 43 92-134 43-85 (162)
94 3uj3_X DNA-invertase; helix-tu 58.6 2 7E-05 36.7 0.0 36 97-132 146-181 (193)
95 3fmy_A HTH-type transcriptiona 58.6 2.2 7.5E-05 30.1 0.2 28 103-130 18-45 (73)
96 2gxg_A 146AA long hypothetical 58.3 4.7 0.00016 32.0 2.2 41 92-134 34-75 (146)
97 3tgn_A ADC operon repressor AD 58.2 10 0.00034 30.0 4.2 43 91-134 34-76 (146)
98 3d0s_A Transcriptional regulat 57.9 2.9 0.0001 36.0 0.9 103 51-155 107-224 (227)
99 3e6c_C CPRK, cyclic nucleotide 57.7 1.9 6.5E-05 38.0 -0.3 67 92-158 146-227 (250)
100 1sfx_A Conserved hypothetical 57.5 3.7 0.00013 30.7 1.4 29 107-135 32-60 (109)
101 1on2_A Transcriptional regulat 57.1 3.7 0.00013 32.8 1.4 27 108-134 21-47 (142)
102 3szt_A QCSR, quorum-sensing co 56.8 7.3 0.00025 34.3 3.4 46 90-137 173-218 (237)
103 1y0u_A Arsenical resistance op 56.7 2.3 8E-05 31.7 0.1 27 107-133 41-67 (96)
104 2l0k_A Stage III sporulation p 56.5 2.2 7.7E-05 32.1 -0.1 25 108-132 19-43 (93)
105 2oa4_A SIR5; structure, struct 56.4 3.3 0.00011 31.7 0.9 41 93-133 34-74 (101)
106 1tbx_A ORF F-93, hypothetical 56.3 4 0.00014 30.4 1.3 39 96-135 10-52 (99)
107 3bj6_A Transcriptional regulat 55.8 4.3 0.00015 32.5 1.6 41 93-134 38-79 (152)
108 1l3l_A Transcriptional activat 55.8 5.4 0.00018 35.0 2.3 46 91-138 172-217 (234)
109 1o5l_A Transcriptional regulat 55.8 2.4 8.3E-05 36.4 0.0 44 92-135 140-190 (213)
110 3dkw_A DNR protein; CRP-FNR, H 55.7 3.7 0.00012 35.3 1.2 82 52-135 112-204 (227)
111 2q0o_A Probable transcriptiona 55.5 4.5 0.00015 35.6 1.8 46 91-138 174-219 (236)
112 3bpv_A Transcriptional regulat 55.5 4.9 0.00017 31.5 1.8 43 92-134 26-68 (138)
113 3jw4_A Transcriptional regulat 55.2 6.2 0.00021 31.5 2.5 43 93-135 39-83 (148)
114 3g3z_A NMB1585, transcriptiona 54.8 6.1 0.00021 31.4 2.3 43 92-134 28-70 (145)
115 2rdp_A Putative transcriptiona 54.4 7.4 0.00025 31.0 2.8 43 92-135 39-82 (150)
116 1ft9_A Carbon monoxide oxidati 54.2 3.3 0.00011 35.7 0.6 44 92-135 132-189 (222)
117 2nnn_A Probable transcriptiona 54.1 4.9 0.00017 31.6 1.6 43 92-135 35-78 (140)
118 2htj_A P fimbrial regulatory p 54.1 4.8 0.00016 28.9 1.4 25 109-133 14-38 (81)
119 3u2r_A Regulatory protein MARR 53.8 7.4 0.00025 31.9 2.8 43 93-135 44-88 (168)
120 1neq_A DNA-binding protein NER 53.6 2.9 9.9E-05 29.9 0.1 25 107-131 20-44 (74)
121 1k78_A Paired box protein PAX5 53.6 19 0.00064 28.8 5.2 81 51-133 49-142 (149)
122 3oop_A LIN2960 protein; protei 53.5 6.7 0.00023 31.1 2.4 45 91-135 33-77 (143)
123 1pdn_C Protein (PRD paired); p 53.5 11 0.00038 28.9 3.6 80 51-132 34-126 (128)
124 3nrv_A Putative transcriptiona 53.4 5.1 0.00017 32.0 1.6 44 92-135 37-80 (148)
125 3fm5_A Transcriptional regulat 53.1 4.4 0.00015 32.5 1.2 42 93-134 37-79 (150)
126 4ev0_A Transcription regulator 52.9 3.1 0.0001 35.5 0.2 66 93-158 140-213 (216)
127 2bv6_A MGRA, HTH-type transcri 52.8 5.5 0.00019 31.5 1.7 42 93-135 35-77 (142)
128 3e97_A Transcriptional regulat 52.7 1.7 6E-05 37.6 -1.5 63 94-156 146-223 (231)
129 3cuo_A Uncharacterized HTH-typ 52.6 2.8 9.4E-05 31.1 -0.1 26 109-134 38-63 (99)
130 3kp7_A Transcriptional regulat 52.6 6.2 0.00021 31.7 2.0 41 93-135 36-77 (151)
131 3bro_A Transcriptional regulat 52.2 6 0.00021 31.1 1.9 43 93-135 32-76 (141)
132 2fbi_A Probable transcriptiona 51.9 4.5 0.00015 31.9 1.1 42 93-135 34-76 (142)
133 3kcc_A Catabolite gene activat 51.5 4.6 0.00016 35.9 1.1 44 92-135 187-243 (260)
134 3boq_A Transcriptional regulat 51.2 6.1 0.00021 32.0 1.8 43 93-135 45-88 (160)
135 2jt1_A PEFI protein; solution 50.7 4.8 0.00016 29.1 0.9 21 110-130 25-45 (77)
136 2w48_A Sorbitol operon regulat 50.7 5.6 0.00019 36.8 1.6 34 99-132 11-44 (315)
137 3o9x_A Uncharacterized HTH-typ 50.5 3.5 0.00012 32.7 0.2 28 103-130 78-105 (133)
138 2pex_A Transcriptional regulat 50.0 5.7 0.0002 31.9 1.4 43 92-134 44-86 (153)
139 2a61_A Transcriptional regulat 49.8 5.9 0.0002 31.3 1.5 42 93-135 31-73 (145)
140 1q1h_A TFE, transcription fact 49.6 5.9 0.0002 30.2 1.4 26 109-134 33-58 (110)
141 3bdd_A Regulatory protein MARR 49.5 6 0.0002 31.1 1.4 28 107-134 43-70 (142)
142 2fa5_A Transcriptional regulat 49.5 7 0.00024 31.7 1.9 42 93-135 47-89 (162)
143 2eth_A Transcriptional regulat 49.5 5.7 0.0002 32.0 1.3 43 92-135 41-84 (154)
144 2fbk_A Transcriptional regulat 49.5 10 0.00035 31.5 3.0 43 93-135 67-112 (181)
145 1jgs_A Multiple antibiotic res 49.3 6.9 0.00024 30.7 1.8 43 92-135 31-74 (138)
146 1rzs_A Antirepressor, regulato 49.3 1 3.5E-05 30.9 -2.8 22 109-130 10-31 (61)
147 3eco_A MEPR; mutlidrug efflux 49.2 5.4 0.00019 31.4 1.1 43 93-135 29-73 (139)
148 2a6c_A Helix-turn-helix motif; 49.2 3.3 0.00011 29.9 -0.2 27 105-131 27-53 (83)
149 2frh_A SARA, staphylococcal ac 49.0 4.4 0.00015 31.9 0.5 43 92-135 34-79 (127)
150 2hin_A GP39, repressor protein 49.0 2.9 9.9E-05 29.8 -0.5 21 111-131 12-32 (71)
151 2hr3_A Probable transcriptiona 49.0 9.3 0.00032 30.3 2.5 44 92-135 32-76 (147)
152 2cyy_A Putative HTH-type trans 48.9 8.6 0.00029 31.2 2.3 43 93-135 5-47 (151)
153 4hbl_A Transcriptional regulat 48.9 5.4 0.00018 32.0 1.1 44 92-135 38-81 (149)
154 3pqk_A Biofilm growth-associat 48.9 4.9 0.00017 30.2 0.8 28 108-135 35-62 (102)
155 3deu_A Transcriptional regulat 48.9 4.6 0.00016 33.4 0.6 44 92-135 50-94 (166)
156 1fx7_A Iron-dependent represso 48.8 5.3 0.00018 35.1 1.1 42 94-135 6-50 (230)
157 2cfx_A HTH-type transcriptiona 48.6 7.3 0.00025 31.3 1.8 27 107-133 17-43 (144)
158 2dk5_A DNA-directed RNA polyme 48.6 3.5 0.00012 30.9 -0.2 43 91-133 16-60 (91)
159 2xi8_A Putative transcription 48.6 3.1 0.00011 28.0 -0.4 44 105-160 10-53 (66)
160 1zug_A Phage 434 CRO protein; 48.1 3.2 0.00011 28.4 -0.4 26 105-130 12-37 (71)
161 1z91_A Organic hydroperoxide r 48.1 5.8 0.0002 31.5 1.1 42 92-134 37-79 (147)
162 3cjn_A Transcriptional regulat 47.9 5.6 0.00019 32.3 1.1 41 93-134 50-91 (162)
163 1lj9_A Transcriptional regulat 47.7 6.4 0.00022 31.2 1.3 41 93-134 27-68 (144)
164 1mkm_A ICLR transcriptional re 47.7 4.5 0.00015 36.1 0.4 42 94-135 5-49 (249)
165 2w25_A Probable transcriptiona 47.7 7.6 0.00026 31.4 1.8 27 107-133 19-45 (150)
166 3dn7_A Cyclic nucleotide bindi 47.6 4.1 0.00014 34.1 0.1 43 92-134 148-193 (194)
167 1r69_A Repressor protein CI; g 47.5 3.4 0.00011 28.2 -0.4 26 105-130 10-35 (69)
168 3n0r_A Response regulator; sig 47.0 8.3 0.00028 35.0 2.2 73 92-165 111-184 (286)
169 2qww_A Transcriptional regulat 46.8 6.1 0.00021 31.7 1.1 42 92-134 38-80 (154)
170 3eus_A DNA-binding protein; st 46.6 3.7 0.00013 29.9 -0.3 26 105-130 23-48 (86)
171 2dbb_A Putative HTH-type trans 46.3 9.4 0.00032 30.8 2.2 28 107-134 21-48 (151)
172 3qq6_A HTH-type transcriptiona 46.2 3.6 0.00012 29.4 -0.4 48 102-160 16-63 (78)
173 2g7u_A Transcriptional regulat 46.2 6.2 0.00021 35.3 1.1 45 91-135 8-55 (257)
174 3f6o_A Probable transcriptiona 46.1 3.5 0.00012 32.1 -0.5 29 107-135 29-57 (118)
175 2b5a_A C.BCLI; helix-turn-heli 45.9 3.6 0.00012 28.8 -0.4 27 105-131 19-45 (77)
176 2oqg_A Possible transcriptiona 45.9 5.3 0.00018 30.5 0.5 36 98-135 25-60 (114)
177 3jth_A Transcription activator 45.8 3.4 0.00011 30.8 -0.6 32 104-135 30-62 (98)
178 3cdh_A Transcriptional regulat 45.3 7.4 0.00025 31.3 1.4 43 93-135 41-83 (155)
179 2kko_A Possible transcriptiona 45.2 4.3 0.00015 31.1 -0.1 28 108-135 37-64 (108)
180 2jsc_A Transcriptional regulat 45.2 5.6 0.00019 30.9 0.6 28 107-134 32-59 (118)
181 2cg4_A Regulatory protein ASNC 45.2 9.2 0.00031 31.0 1.9 28 107-134 20-47 (152)
182 2nyx_A Probable transcriptiona 45.1 6.8 0.00023 32.2 1.2 42 92-134 42-84 (168)
183 1s3j_A YUSO protein; structura 44.8 5.4 0.00018 32.0 0.4 42 92-134 34-76 (155)
184 1i1g_A Transcriptional regulat 44.5 7.6 0.00026 30.9 1.3 27 108-134 17-43 (141)
185 1vz0_A PARB, chromosome partit 44.0 7.5 0.00026 34.3 1.3 40 91-130 116-155 (230)
186 2pn6_A ST1022, 150AA long hypo 44.0 8.4 0.00029 31.1 1.5 26 109-134 17-42 (150)
187 1r1t_A Transcriptional repress 43.7 6.5 0.00022 30.9 0.8 28 108-135 58-85 (122)
188 3bd1_A CRO protein; transcript 43.6 3.2 0.00011 29.6 -1.1 24 107-131 10-33 (79)
189 4ghj_A Probable transcriptiona 43.5 4.1 0.00014 31.1 -0.5 34 96-129 34-69 (101)
190 3kz3_A Repressor protein CI; f 43.4 3.2 0.00011 29.6 -1.0 24 107-130 23-46 (80)
191 3omt_A Uncharacterized protein 43.4 3.6 0.00012 28.7 -0.8 43 106-160 18-60 (73)
192 3b7h_A Prophage LP1 protein 11 43.3 4 0.00014 28.6 -0.5 45 105-160 16-60 (78)
193 3ctp_A Periplasmic binding pro 43.0 5.1 0.00017 36.8 0.0 22 111-132 4-25 (330)
194 2hzt_A Putative HTH-type trans 43.0 6.6 0.00023 29.9 0.7 28 107-134 25-53 (107)
195 2o20_A Catabolite control prot 43.0 5.1 0.00017 36.8 0.0 23 110-132 6-28 (332)
196 1p6r_A Penicillinase repressor 43.0 5.1 0.00017 28.8 0.0 40 93-133 7-51 (82)
197 3plo_X DNA-invertase; resolvas 42.9 5.1 0.00017 34.2 0.0 37 99-135 148-184 (193)
198 2fxa_A Protease production reg 42.9 10 0.00036 32.6 2.0 41 92-133 45-86 (207)
199 2gqq_A Leucine-responsive regu 42.8 27 0.00092 28.5 4.5 28 106-133 24-51 (163)
200 1xwr_A Regulatory protein CII; 42.8 6.7 0.00023 29.7 0.7 24 110-133 24-47 (97)
201 3qp6_A CVIR transcriptional re 42.6 15 0.0005 33.1 3.0 45 91-137 196-240 (265)
202 2gau_A Transcriptional regulat 42.5 9.8 0.00034 32.7 1.8 66 92-157 150-229 (232)
203 3f3x_A Transcriptional regulat 42.4 7.6 0.00026 30.8 1.0 25 111-135 52-76 (144)
204 2wiu_B HTH-type transcriptiona 42.3 4.6 0.00016 29.1 -0.3 44 105-160 21-64 (88)
205 2p5v_A Transcriptional regulat 42.3 10 0.00035 31.1 1.8 42 93-134 8-49 (162)
206 3bil_A Probable LACI-family tr 42.1 5.3 0.00018 37.1 0.0 22 111-132 10-31 (348)
207 3m8j_A FOCB protein; all-alpha 42.0 19 0.00067 27.8 3.1 55 61-133 29-84 (111)
208 3h5o_A Transcriptional regulat 41.9 5.4 0.00019 36.8 0.0 23 110-132 5-27 (339)
209 3e6m_A MARR family transcripti 41.9 6.8 0.00023 31.9 0.6 42 93-135 51-93 (161)
210 1y7y_A C.AHDI; helix-turn-heli 41.9 4.6 0.00016 27.9 -0.4 44 105-160 22-65 (74)
211 2ovg_A Phage lambda CRO; trans 41.8 1.7 5.8E-05 30.5 -2.7 20 111-130 15-34 (66)
212 1u2w_A CADC repressor, cadmium 41.8 6.1 0.00021 31.0 0.3 28 108-135 55-82 (122)
213 3jvd_A Transcriptional regulat 41.7 5.5 0.00019 36.8 0.0 23 110-132 7-29 (333)
214 2r1j_L Repressor protein C2; p 41.4 3.7 0.00013 27.8 -1.0 25 106-130 15-39 (68)
215 2fu4_A Ferric uptake regulatio 41.4 12 0.00041 26.7 1.9 26 109-134 33-63 (83)
216 3dbi_A Sugar-binding transcrip 41.3 5.6 0.00019 36.6 0.0 22 111-132 5-26 (338)
217 3hsr_A HTH-type transcriptiona 41.0 5.1 0.00017 31.8 -0.3 44 92-135 33-76 (140)
218 1jye_A Lactose operon represso 40.8 5.8 0.0002 36.9 0.0 22 111-132 5-26 (349)
219 2p5k_A Arginine repressor; DNA 40.8 7.5 0.00026 26.2 0.6 35 97-131 5-46 (64)
220 3s8q_A R-M controller protein; 40.3 4.9 0.00017 28.6 -0.5 26 105-130 20-45 (82)
221 4b8x_A SCO5413, possible MARR- 40.2 12 0.0004 30.2 1.8 42 93-134 33-76 (147)
222 3e3m_A Transcriptional regulat 40.2 6 0.0002 36.8 0.0 22 111-132 14-35 (355)
223 3bs3_A Putative DNA-binding pr 40.0 5.1 0.00017 27.9 -0.4 44 105-160 19-62 (76)
224 2ppx_A AGR_C_3184P, uncharacte 39.9 5 0.00017 30.0 -0.5 26 105-130 39-64 (99)
225 2kpj_A SOS-response transcript 39.9 5.4 0.00019 29.4 -0.3 43 106-160 19-61 (94)
226 4ham_A LMO2241 protein; struct 39.5 15 0.00053 29.1 2.4 40 92-131 12-60 (134)
227 2k9q_A Uncharacterized protein 39.3 4.2 0.00014 28.7 -1.0 26 105-130 11-36 (77)
228 3nqo_A MARR-family transcripti 39.2 10 0.00035 31.9 1.4 41 93-133 39-81 (189)
229 2ia0_A Putative HTH-type trans 39.1 13 0.00044 31.0 1.9 43 92-134 14-56 (171)
230 1adr_A P22 C2 repressor; trans 38.6 4.4 0.00015 28.2 -1.0 43 106-160 15-57 (76)
231 2bgc_A PRFA; bacterial infecti 38.2 8.6 0.00029 33.4 0.7 67 92-158 137-220 (238)
232 1xn7_A Hypothetical protein YH 38.2 9.9 0.00034 27.4 0.9 24 109-132 16-39 (78)
233 3f6w_A XRE-family like protein 38.0 4.4 0.00015 28.9 -1.0 26 105-130 23-48 (83)
234 2ofy_A Putative XRE-family tra 37.9 8.4 0.00029 27.6 0.5 52 98-160 16-67 (86)
235 1ub9_A Hypothetical protein PH 37.8 7.9 0.00027 28.5 0.4 28 108-135 29-56 (100)
236 3s2w_A Transcriptional regulat 37.7 5.7 0.0002 32.2 -0.5 37 98-135 54-90 (159)
237 2e1c_A Putative HTH-type trans 37.6 13 0.00046 30.9 1.8 42 93-134 25-66 (171)
238 2qq9_A Diphtheria toxin repres 37.5 8.2 0.00028 33.8 0.5 39 96-134 8-49 (226)
239 2xrn_A HTH-type transcriptiona 37.3 8.1 0.00028 34.2 0.4 41 95-135 4-47 (241)
240 2ewt_A BLDD, putative DNA-bind 37.2 6.8 0.00023 26.8 -0.1 43 106-160 18-62 (71)
241 2vn2_A DNAD, chromosome replic 36.8 14 0.00049 29.1 1.8 26 110-135 52-77 (128)
242 2ef8_A C.ECOT38IS, putative tr 36.8 6.2 0.00021 28.0 -0.4 26 105-130 19-44 (84)
243 2r0q_C Putative transposon TN5 36.7 8.4 0.00029 33.2 0.4 30 103-132 169-198 (209)
244 2f2e_A PA1607; transcription f 36.6 8.9 0.0003 31.1 0.5 28 108-135 36-63 (146)
245 3t76_A VANU, transcriptional r 36.6 6.2 0.00021 29.1 -0.4 43 105-160 33-75 (88)
246 2hsg_A Glucose-resistance amyl 36.1 4.9 0.00017 36.9 -1.3 22 111-132 4-25 (332)
247 3f6v_A Possible transcriptiona 36.1 6.4 0.00022 32.3 -0.5 29 107-135 69-97 (151)
248 2p5t_A Putative transcriptiona 36.0 7.6 0.00026 31.8 0.0 24 106-129 11-34 (158)
249 2h09_A Transcriptional regulat 35.8 11 0.00037 30.5 0.9 27 108-134 53-79 (155)
250 1lmb_3 Protein (lambda repress 35.4 4.4 0.00015 29.6 -1.5 26 106-131 27-52 (92)
251 3kjx_A Transcriptional regulat 35.2 5.4 0.00019 36.9 -1.2 23 110-132 11-33 (344)
252 1qpz_A PURA, protein (purine n 35.0 5 0.00017 37.0 -1.4 22 111-132 2-23 (340)
253 2zkz_A Transcriptional repress 34.7 5.1 0.00017 30.1 -1.2 29 108-136 40-68 (99)
254 2wte_A CSA3; antiviral protein 34.6 14 0.00047 32.9 1.5 30 106-135 163-192 (244)
255 1okr_A MECI, methicillin resis 34.2 10 0.00036 29.1 0.6 43 92-135 7-54 (123)
256 1gdt_A GD resolvase, protein ( 34.1 7 0.00024 32.9 -0.6 28 104-131 153-180 (183)
257 1x57_A Endothelial differentia 34.0 8.2 0.00028 28.1 -0.1 46 103-160 20-65 (91)
258 2o0y_A Transcriptional regulat 33.8 9.6 0.00033 34.1 0.3 44 92-135 18-64 (260)
259 1yyv_A Putative transcriptiona 33.7 9.4 0.00032 30.4 0.2 33 103-135 41-75 (131)
260 1v4r_A Transcriptional repress 33.3 6.7 0.00023 29.5 -0.7 22 111-132 37-58 (102)
261 3hrs_A Metalloregulator SCAR; 33.1 13 0.00043 32.3 0.9 39 96-134 4-45 (214)
262 3trb_A Virulence-associated pr 32.6 7 0.00024 29.8 -0.7 40 91-131 10-49 (104)
263 2di3_A Bacterial regulatory pr 32.6 19 0.00065 31.5 2.1 51 62-132 1-51 (239)
264 1nr3_A MTH0916, DNA-binding pr 32.5 9.5 0.00032 29.8 0.0 25 108-132 4-28 (122)
265 3ic7_A Putative transcriptiona 32.3 18 0.00062 28.4 1.7 23 111-133 37-59 (126)
266 2l49_A C protein; P2 bacteriop 32.2 8.1 0.00028 28.5 -0.4 27 105-131 13-39 (99)
267 3cec_A Putative antidote prote 31.9 6.7 0.00023 29.5 -1.0 27 105-131 27-53 (104)
268 3g5g_A Regulatory protein; tra 31.9 8 0.00028 29.0 -0.5 26 105-130 37-62 (99)
269 3kxa_A NGO0477 protein, putati 31.8 9.3 0.00032 30.8 -0.1 28 104-131 76-103 (141)
270 2g9w_A Conserved hypothetical 31.5 12 0.0004 29.9 0.4 43 93-135 7-54 (138)
271 3h5t_A Transcriptional regulat 31.2 6.3 0.00022 36.8 -1.5 22 110-131 10-31 (366)
272 2ia2_A Putative transcriptiona 31.0 11 0.00037 33.9 0.2 44 92-135 16-62 (265)
273 3cta_A Riboflavin kinase; stru 30.6 13 0.00044 32.5 0.6 27 109-135 27-53 (230)
274 1b0n_A Protein (SINR protein); 30.6 9.1 0.00031 28.9 -0.4 45 105-160 10-54 (111)
275 3bdn_A Lambda repressor; repre 30.4 16 0.00054 31.8 1.1 34 99-132 18-53 (236)
276 2fsw_A PG_0823 protein; alpha- 30.4 11 0.00037 28.6 0.0 28 107-134 36-64 (107)
277 2obp_A Putative DNA-binding pr 30.2 14 0.00047 27.9 0.6 36 98-133 20-60 (96)
278 2ict_A Antitoxin HIGA; helix-t 30.2 7.5 0.00026 28.5 -0.9 37 93-131 7-43 (94)
279 2eby_A Putative HTH-type trans 30.0 6.7 0.00023 29.9 -1.3 27 105-131 20-46 (113)
280 2k02_A Ferrous iron transport 29.9 10 0.00036 28.0 -0.1 23 109-131 16-38 (87)
281 3vk0_A NHTF, transcriptional r 29.7 9.3 0.00032 29.3 -0.5 37 94-130 17-55 (114)
282 1a04_A Nitrate/nitrite respons 29.7 13 0.00045 31.4 0.5 44 92-137 154-197 (215)
283 2b0l_A GTP-sensing transcripti 29.5 8.2 0.00028 29.4 -0.8 24 111-134 45-68 (102)
284 1sfu_A 34L protein; protein/Z- 29.4 14 0.00049 26.4 0.5 37 94-130 12-50 (75)
285 3mlf_A Transcriptional regulat 29.4 9.5 0.00033 29.3 -0.5 27 104-130 31-57 (111)
286 2o38_A Hypothetical protein; a 29.1 10 0.00034 29.8 -0.4 45 105-160 49-93 (120)
287 3mq0_A Transcriptional repress 28.9 11 0.00038 34.1 -0.1 45 91-135 24-71 (275)
288 1z7u_A Hypothetical protein EF 28.9 17 0.00059 27.7 1.0 35 99-135 27-62 (112)
289 3mkl_A HTH-type transcriptiona 28.6 56 0.0019 24.9 4.0 73 49-133 22-96 (120)
290 3i4p_A Transcriptional regulat 28.4 21 0.00073 29.2 1.6 27 108-134 16-42 (162)
291 3op9_A PLI0006 protein; struct 28.2 8.2 0.00028 29.5 -1.0 44 105-160 18-61 (114)
292 2auw_A Hypothetical protein NE 27.9 8.7 0.0003 32.3 -1.0 30 101-130 95-124 (170)
293 4fx0_A Probable transcriptiona 27.7 20 0.0007 28.7 1.3 25 110-134 53-77 (148)
294 2jvl_A TRMBF1; coactivator, he 27.5 12 0.0004 28.5 -0.3 42 107-160 47-88 (107)
295 2o0m_A Transcriptional regulat 27.4 13 0.00044 34.8 0.0 36 98-134 24-59 (345)
296 3df8_A Possible HXLR family tr 27.0 19 0.00066 27.5 0.9 34 102-135 32-69 (111)
297 1c9b_A General transcription f 26.4 45 0.0015 28.3 3.3 42 104-145 154-195 (207)
298 2wus_R RODZ, putative uncharac 26.0 14 0.00048 28.5 -0.1 26 105-130 16-41 (112)
299 3r4k_A Transcriptional regulat 25.9 14 0.00048 33.1 -0.1 42 94-135 3-47 (260)
300 1j5y_A Transcriptional regulat 25.8 22 0.00076 29.9 1.2 37 97-133 21-60 (187)
301 3f52_A CLP gene regulator (CLG 25.7 10 0.00036 29.0 -0.9 37 94-130 24-62 (117)
302 3c3w_A Two component transcrip 25.6 14 0.00049 31.6 -0.0 44 92-137 149-192 (225)
303 2h8r_A Hepatocyte nuclear fact 25.6 10 0.00035 33.2 -1.0 31 101-131 36-66 (221)
304 1j9i_A GPNU1 DBD;, terminase s 25.2 9.4 0.00032 26.4 -1.1 21 112-132 5-25 (68)
305 3ivp_A Putative transposon-rel 25.1 13 0.00043 29.0 -0.5 45 104-160 20-64 (126)
306 2k27_A Paired box protein PAX- 24.9 36 0.0012 27.5 2.3 26 51-76 42-67 (159)
307 3tqn_A Transcriptional regulat 24.5 12 0.00039 28.9 -0.8 24 111-134 35-58 (113)
308 3lsg_A Two-component response 24.1 60 0.0021 23.8 3.3 74 49-133 18-93 (103)
309 2qlz_A Transcription factor PF 23.3 34 0.0012 30.1 2.0 25 108-132 24-48 (232)
310 2v79_A DNA replication protein 23.3 33 0.0011 27.4 1.7 27 109-135 51-77 (135)
311 3neu_A LIN1836 protein; struct 23.2 13 0.00043 29.3 -0.8 24 111-134 39-62 (125)
312 1yio_A Response regulatory pro 23.2 18 0.00063 30.2 0.2 43 93-137 143-185 (208)
313 1ic8_A Hepatocyte nuclear fact 23.1 13 0.00044 31.9 -0.8 25 106-130 40-64 (194)
314 1sd4_A Penicillinase repressor 22.9 25 0.00084 27.0 0.9 43 92-135 7-54 (126)
315 3oou_A LIN2118 protein; protei 22.9 31 0.0011 25.8 1.4 29 105-133 17-45 (108)
316 3k2z_A LEXA repressor; winged 22.6 30 0.001 29.2 1.4 23 109-131 24-46 (196)
317 2k4b_A Transcriptional regulat 22.3 12 0.0004 28.4 -1.1 38 96-134 37-78 (99)
318 1ais_B TFB TFIIB, protein (tra 22.1 71 0.0024 26.8 3.8 38 101-138 157-194 (200)
319 2ek5_A Predicted transcription 22.1 16 0.00054 29.0 -0.5 22 111-132 30-51 (129)
320 1ntc_A Protein (nitrogen regul 22.0 34 0.0012 25.1 1.4 26 107-132 62-87 (91)
321 1z4h_A TORI, TOR inhibition pr 21.5 13 0.00045 25.5 -0.9 21 112-132 13-33 (66)
322 1uly_A Hypothetical protein PH 21.2 27 0.00093 29.7 0.8 26 107-132 31-56 (192)
323 3klo_A Transcriptional regulat 21.0 22 0.00074 30.4 0.2 40 92-133 159-198 (225)
324 3hot_A Transposable element ma 20.9 27 0.00092 32.1 0.8 40 96-135 9-55 (345)
325 1ixc_A CBNR, LYSR-type regulat 20.6 26 0.00088 30.8 0.6 32 108-139 14-45 (294)
326 3by6_A Predicted transcription 20.5 16 0.00053 28.8 -0.8 23 111-133 37-59 (126)
327 3mn2_A Probable ARAC family tr 20.4 34 0.0012 25.5 1.2 27 107-133 16-42 (108)
328 1al3_A Cys regulon transcripti 20.0 22 0.00075 32.1 0.0 38 102-139 9-46 (324)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.81 E-value=0.0023 Score=41.99 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=33.6
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..++.+++..+.+. +..|.++..||..+|||.+||.+++.+
T Consensus 3 ~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 3 GSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp SCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 456788777655554 468999999999999999999998754
No 2
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.85 E-value=0.0075 Score=41.75 Aligned_cols=44 Identities=5% Similarity=0.055 Sum_probs=37.6
Q ss_pred CCccCHHHHHHHHHHHhcCCCC----ccccccccCCcccccchhhhHHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDS----LMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~----~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
++..|++.++.+ +.++..|.+ ...+|..|||+.+|+.+++...-
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456889999888 778888888 99999999999999999876543
No 3
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.80 E-value=0.014 Score=45.18 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 61 KISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 61 rms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
||+.+.|+.+...++ ++ +..+-++=.||-.|.++.+||..+|+|++|||+++.+.-....
T Consensus 4 rmT~~eFe~~~~~l~-----------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE-----------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTCC-----------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC-----------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 799999999886551 11 2446667778889999999999999999999999988766543
No 4
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.35 E-value=0.0057 Score=47.36 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHH-----hcCC-CCccccccccCCcccccchhhhHHHHHHH
Q 016336 92 HLSFRDQVAIALRR-----LSSG-DSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 92 ~l~~e~~l~i~L~~-----L~~g-~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
.+++.++-+|++++ |..| .+|+.|+...|||+|||||+ .+.+..+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 36777886666654 3356 99999999999999999998 66665443
No 5
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.39 E-value=0.017 Score=38.08 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.++.++. ..++..+..|.+...+|..+|||++||++++.+
T Consensus 5 ~~~~~~~-~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQ-EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHH-HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444433 233334567899999999999999999998754
No 6
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.19 E-value=0.042 Score=41.12 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=41.8
Q ss_pred ccCHHHHHHHHHHH-hc--CCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 92 HLSFRDQVAIALRR-LS--SGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 92 ~l~~e~~l~i~L~~-L~--~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
.+|+.++-.+.|+| |. .|.++..||..+|+|.+||..+..+....|..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47889999999988 45 78999999999999999999998888777754
No 7
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=92.90 E-value=0.032 Score=42.53 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=37.1
Q ss_pred CccCHHHHHHHHHHHhcC-CCCccccccccCCcccccchhhhHH
Q 016336 91 KHLSFRDQVAIALRRLSS-GDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~-g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+..|++.++.+.-.++.. |.+...++..||||.+|+++++.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 467888888888778877 9999999999999999999987654
No 8
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.88 E-value=0.051 Score=39.05 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=42.3
Q ss_pred CccCHHHHHHHHHHHh-c--CCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRL-S--SGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L-~--~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..+++.++-.+.|+|. . .|.++.+||..+|+|.+||..+..+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3589999999999884 3 7899999999999999999999988888776
No 9
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.86 E-value=0.033 Score=39.43 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=41.4
Q ss_pred ccCHHHHHHHHHHH-h--cCCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 92 HLSFRDQVAIALRR-L--SSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 92 ~l~~e~~l~i~L~~-L--~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
.+++.++-.+.|+| + ..|.++.+||..+|+|.+||.....+....|..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 58999999999988 3 589999999999999999999988887766643
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=92.62 E-value=0.054 Score=38.21 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHh
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQK 140 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~ 140 (391)
.+++.++-++.|+|+ .|.++.++|..+|+|.+||.+.+.+....|...
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888877777764 689999999999999999999998888877653
No 11
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.07 E-value=0.074 Score=40.08 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHh
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQK 140 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~ 140 (391)
.++..++-++.|+|+ .|.++..||..+|||.+||...+.+....|...
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888888765 789999999999999999999998888777654
No 12
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=91.87 E-value=0.078 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.3
Q ss_pred ChhHHHhhcCCCHHHHHHHHHH
Q 016336 52 GLDKFKSVFKISRRTFDYICSL 73 (391)
Q Consensus 52 ~~~~F~~~frms~~tF~~L~~~ 73 (391)
+|++|...|+|+++.|..|-..
T Consensus 2 sd~dF~~vFgmsr~eF~~LP~W 23 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLPLW 23 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHH
T ss_pred CHHHHHHHHCCCHHHHHHCcHH
Confidence 6899999999999999987543
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=91.57 E-value=0.091 Score=40.47 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=42.9
Q ss_pred ccCHHHHHHHHHHHh---cCCCCccccccccCCcccccchhhhHHHHHHHHh
Q 016336 92 HLSFRDQVAIALRRL---SSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQK 140 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L---~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~ 140 (391)
.+|+.++-.+.|+|. ..|.++..||..+|+|.+||..+..+.+..|-..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 488999999999986 3789999999999999999999998888877553
No 14
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=91.18 E-value=0.1 Score=32.36 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.7
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 016336 51 KGLDKFKSVFKISRRTFDYICSL 73 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~ 73 (391)
.+|++|...|+|+++.|..|-..
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP~W 25 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALPGW 25 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 46899999999999999987543
No 15
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=91.17 E-value=0.056 Score=41.24 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=43.8
Q ss_pred CCCccCHHHHHHHHHHHhcCCCCcccccccc-CCcccccchhhhHHHHHHH
Q 016336 89 SGKHLSFRDQVAIALRRLSSGDSLMSIGDSC-GLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 89 ~~~~l~~e~~l~i~L~~L~~g~~~~~l~~~F-gvs~sTvs~~~~~~~~~l~ 138 (391)
+.+.+...-|+||.|.+--++.|+..||..| |..+|||...+.++-..+.
T Consensus 26 R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 26 RSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999 8999999998888877664
No 16
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.65 E-value=0.076 Score=42.97 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=35.5
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+..++.+++..+...+ ..|.+...+|..||||.+||++++.++
T Consensus 4 ~~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 4 GSALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp SCCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4668888877666554 689999999999999999999988664
No 17
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.25 E-value=0.084 Score=39.44 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=34.3
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+..+.+.+..+.-.+ ..|.+...+|..||||.+|+++++.+.-.
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 467887776555444 57899999999999999999998765543
No 18
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=90.04 E-value=0.047 Score=36.74 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 95 FRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 95 ~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
++..-.+... +..|.++.++|..+|||++||++++.+
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 5444333333 578999999999999999999988753
No 19
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=89.47 E-value=0.16 Score=36.08 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=38.1
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..+++.++-.+.+ +..|.++.++|..+|+|.+||+..+.+....|.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 5688888777766 378999999999999999999998887766553
No 20
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.39 E-value=0.13 Score=40.47 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=35.6
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+.++.+.+..+...+ ..|.+...+|..||||.+||++++.++-
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468888887776554 5899999999999999999999887653
No 21
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=89.30 E-value=0.15 Score=41.92 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+..++.+.+..+...+ ..|.+...+|..||||.+||++++.++..
T Consensus 30 ~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 30 GRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3568888888777666 57999999999999999999999877643
No 22
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=89.05 E-value=0.1 Score=40.28 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=43.7
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
.+.+...-|+||.|.+=-++.|+..||..||..+|||...+.++-..+.+
T Consensus 31 ~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 31 TRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 35677788999999999999999999999999999999988888776654
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=88.87 E-value=0.19 Score=39.56 Aligned_cols=49 Identities=22% Similarity=0.157 Sum_probs=40.2
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhc
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKG 141 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~ 141 (391)
.+|+.++-++.|+|+ .|.++..+|..+|+|.+||...+.+....|...+
T Consensus 22 ~L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 367777766666654 7899999999999999999999999888776543
No 24
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=88.63 E-value=0.23 Score=40.85 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCCccCHHHHHHHHHHH--hcCCCCcccccc----cc--CCcccccchhhhHHHH
Q 016336 89 SGKHLSFRDQVAIALRR--LSSGDSLMSIGD----SC--GLHHSTVSQVTWRFVE 135 (391)
Q Consensus 89 ~~~~l~~e~~l~i~L~~--L~~g~~~~~l~~----~F--gvs~sTvs~~~~~~~~ 135 (391)
.+..++.++++.|..++ -..+.++.+||. .| +||+||||+++..=-.
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 35789999999999998 445678889999 99 9999999998876433
No 25
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=88.07 E-value=0.23 Score=43.68 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=43.5
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhc
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKG 141 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~ 141 (391)
..+++.++-++.|+|+ .|.++..||..+|||.+||.+.+.+....|.+.+
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999886 6899999999999999999999999888876644
No 26
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=88.05 E-value=0.25 Score=42.07 Aligned_cols=52 Identities=29% Similarity=0.229 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhcccc
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQH 144 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~ 144 (391)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||...+.+....|.+.+..+
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888776 6899999999999999999999999988887665443
No 27
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=87.98 E-value=0.17 Score=37.21 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=37.8
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
..++..++-++.| + ..|.++.+||..+|+|.+||...+.+....|
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4588888877777 3 7899999999999999999999887766655
No 28
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=87.63 E-value=0.56 Score=39.44 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=41.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHh
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQK 140 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~ 140 (391)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||...+.+....|-+.
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888888776 689999999999999999999998888777543
No 29
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.46 E-value=0.28 Score=39.26 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCccCHHHHHHHHHHHhcCCCCcc-ccccccCCcccccchhhhHHHHHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLM-SIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~-~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
+..++.+.++.+.-.+...|.+.. ++|..||||++|+++++...-...
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 467899999988777767787766 899999999999999988765544
No 30
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=87.35 E-value=0.23 Score=37.60 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=39.4
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
..++..++-++.|+ ..|.++..||..+|+|.+||...+.+....|..
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34788888877774 899999999999999999999988887776643
No 31
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=87.18 E-value=0.24 Score=37.72 Aligned_cols=44 Identities=7% Similarity=-0.083 Sum_probs=39.4
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.+..+.+.++.+++..+..+.+..+++..|+||.+++.++...+
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999988876554
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=87.10 E-value=0.18 Score=34.45 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=28.5
Q ss_pred hcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
+..|.++.++|..+|+|.+||...+.+...-|
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 68899999999999999999999888776655
No 33
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=86.42 E-value=0.16 Score=42.29 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=35.3
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
++.++.+.+..+...+ ..|.+...+|..||||++||++++.++
T Consensus 23 ~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp SCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3568888887776555 579999999999999999999987654
No 34
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=85.90 E-value=0.25 Score=35.64 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
+++.++-++.| + ..|.++.+||..+|+|.+||...+.+....|
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56667766666 3 7899999999999999999998887766544
No 35
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=85.54 E-value=6.9 Score=36.29 Aligned_cols=170 Identities=10% Similarity=-0.008 Sum_probs=89.5
Q ss_pred hhHHHhhcC---CCHHHHHHHHHHhhhccc-cccCCcccCCCCccCHHHHHHHHHHHhcCCCCccccccccCCcccccch
Q 016336 53 LDKFKSVFK---ISRRTFDYICSLVEEKMV-VKTGGFSFTSGKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQ 128 (391)
Q Consensus 53 ~~~F~~~fr---ms~~tF~~L~~~l~~~~~-~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~ 128 (391)
-..+-+.|+ +++.|+...+........ ..+. -+.++...++.+ +|. .+..-....+++.|+..++||.+||++
T Consensus 29 ~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~-~r~grp~~~~~~-~i~-~~v~~~~~~t~~~ia~~l~vs~~tV~r 105 (345)
T 3hot_A 29 HRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDK-EHGKPPKRYEDA-ELQ-ALLDEDDAQTQKQLAEQLEVSQQAVSN 105 (345)
T ss_dssp HHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCC-CCCCCCCSSCHH-HHH-HHHHHCSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCC-CCCCCCCcccHH-HHH-HHHHhCccchHHHHHHHHCCCHHHHHH
Confidence 455667788 999999999987764211 1111 112223345543 332 233344556788899999999999998
Q ss_pred hhhHHHHHHHHhcccccc-CCCHHH---HHHHHHHHhH---hhCCCccceeeeeeEEEeecCCCCCccccccC-------
Q 016336 129 VTWRFVEAMEQKGLQHLQ-WPSETE---MAEIKSKFEK---IQGLPNCCGVIDTTHILMCLPSSDPTNNLWLD------- 194 (391)
Q Consensus 129 ~~~~~~~~l~~~~~~~i~-~P~~~~---~~~i~~~f~~---~~~fp~~~GaIDgthi~i~~p~~~~~~~~y~~------- 194 (391)
++++. .+......... .-+... ..+.+..... ...+++-+-++|-+.+....+.. ...|..
T Consensus 106 ~L~~~--g~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~---~~~w~~~g~~~~~ 180 (345)
T 3hot_A 106 RLREM--GKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKR---KKSYVDPGQPATS 180 (345)
T ss_dssp HHHHT--TCEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCC---CEEEECSSSCCCC
T ss_pred HHHHh--CCeeeccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccc---eeeeccCCCCCCC
Confidence 87662 11111111111 112221 1122222211 12477888899999988652211 111111
Q ss_pred ---C-CCcceeEEEEeeCCCcceeecccCCCCCCCcHHHHh
Q 016336 195 ---H-MKNHSMVLQAIVDPEMRFRDIVTGWPGKMEDRLIFR 231 (391)
Q Consensus 195 ---~-k~~~s~~~q~v~d~~~~f~~v~~g~pGs~~D~~v~~ 231 (391)
. .+.-++.+.+..+..|.+.+......|++ ++..+.
T Consensus 181 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y~ 220 (345)
T 3hot_A 181 TARPNRFGKKTMLCVWWDQSGVIYYELLKPGETV-NAARYQ 220 (345)
T ss_dssp EECCCTTCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHHH
T ss_pred CcCccCcCCcEEEEEEEcccCceeeEecCCCCcc-cHHHHH
Confidence 1 12236667788888886655544322344 355443
No 36
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=85.53 E-value=0.24 Score=37.07 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=36.8
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
..+++.++-++.|+ ..|.++..||..+|+|.+||...+.+....|
T Consensus 28 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34777777777773 7899999999999999999998887766655
No 37
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=84.88 E-value=0.48 Score=37.18 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhc
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKG 141 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~ 141 (391)
.+|+.++-++.|+| ..|.++..+|..+|+|.+||...+.+....|...+
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36777777766655 57899999999999999999999999888886644
No 38
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=84.86 E-value=0.43 Score=33.84 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 016336 51 KGLDKFKSVFKISRRTFDYICSL 73 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~ 73 (391)
.++++|...|+|+++.|..|=..
T Consensus 34 LsdedF~~vFgmsr~eF~~LP~W 56 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLALW 56 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 36999999999999999987544
No 39
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=84.65 E-value=0.6 Score=35.72 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..++..++-++.| +..|.++.+||..+|||.+||...+.+....|.
T Consensus 33 ~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 5688888876665 458999999999999999999998887766553
No 40
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=84.42 E-value=0.14 Score=39.62 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=35.3
Q ss_pred CccCHHHHHHHHHHHhcCC-------CCccccccccCCcccccchhhhH
Q 016336 91 KHLSFRDQVAIALRRLSSG-------DSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g-------~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..|++.++.+...++..| .+...++..||||.+|+++++..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 5678899988887777665 78999999999999999987754
No 41
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=83.51 E-value=0.37 Score=37.32 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.1
Q ss_pred HHhcCCCCccccccccCCcccccchhh
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
..|..|.+|+.|+...|+|.+||+|+-
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~ 79 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVN 79 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHH
Confidence 348899999999999999999999853
No 42
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=82.21 E-value=0.49 Score=33.42 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.1
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHh
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLV 74 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l 74 (391)
.++++|...|+|+++.|..|=..=
T Consensus 33 LsdedF~~vFgms~~eF~~LP~WK 56 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLPLWK 56 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSCHHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHHH
Confidence 369999999999999999875443
No 43
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=81.64 E-value=1.9 Score=34.40 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=51.0
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcCCCCccccccccC--Ccccccchh
Q 016336 52 GLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSSGDSLMSIGDSCG--LHHSTVSQV 129 (391)
Q Consensus 52 ~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fg--vs~sTvs~~ 129 (391)
+..+--..+++++.|+...+........... .++...+++++...+.-.......+...|+..+| +|.+||+++
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~----~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSKR----APRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC----CCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcCC----CCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHH
Confidence 4566677889999999988876554322111 1233457776654333223334578889999888 799999988
Q ss_pred hhH
Q 016336 130 TWR 132 (391)
Q Consensus 130 ~~~ 132 (391)
+.+
T Consensus 100 l~~ 102 (141)
T 1u78_A 100 IKR 102 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 44
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.32 E-value=0.58 Score=35.09 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=36.0
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
..++..++-.+.|. +.|.++.+||..+|||.+||...+.+...-|
T Consensus 28 ~~Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56888777666554 4999999999999999999999887766544
No 45
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=81.24 E-value=0.53 Score=38.52 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=39.3
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhc
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKG 141 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~ 141 (391)
.+|+.++-++. + .-.|.++..||..+|+|.+||...+.+....|.+.+
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 36777777766 4 457999999999999999999999988888776543
No 46
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=80.95 E-value=0.5 Score=33.40 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=19.4
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 016336 51 KGLDKFKSVFKISRRTFDYICSL 73 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~ 73 (391)
.++++|...|+|+++.|..|=..
T Consensus 33 LsdedF~~vFgmsr~eF~~LP~W 55 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALPAW 55 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHCcHH
Confidence 36999999999999999876443
No 47
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=78.38 E-value=0.42 Score=41.92 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEA 136 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~ 136 (391)
.+|+.++-++.|+++ .|.++..||..+|||.+||.+.+.+....
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ---------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478888888888776 68999999999999999999988776543
No 48
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=78.06 E-value=1.3 Score=38.75 Aligned_cols=82 Identities=5% Similarity=-0.116 Sum_probs=53.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcCC--------CCccccccccCCc
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSSG--------DSLMSIGDSCGLH 122 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g--------~~~~~l~~~Fgvs 122 (391)
.+-+.|...+.-.+.....++..+...+...... ...-...+++++|+-+|..++.. .+..+||...|++
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~--~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~s 199 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR--LWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDT 199 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH--TTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSC
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCC
Confidence 3455666666666665555555544433221110 01124578999999999988642 4677899999999
Q ss_pred ccccchhhhHHH
Q 016336 123 HSTVSQVTWRFV 134 (391)
Q Consensus 123 ~sTvs~~~~~~~ 134 (391)
+.||+|++.++.
T Consensus 200 r~tvsR~l~~l~ 211 (232)
T 1zyb_A 200 RLNISKTLNELQ 211 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999999876653
No 49
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=76.02 E-value=0.7 Score=34.42 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhc
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEEK 77 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~~ 77 (391)
.++++|...|+|+++.|..|=..=+..
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~WKq~~ 74 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLALWKRNE 74 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHHHHHH
Confidence 368999999999999999876544433
No 50
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=75.38 E-value=2.7 Score=33.50 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=28.2
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+-..+....-..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45655543333333345789999999999999999998766544
No 51
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=74.44 E-value=0.65 Score=38.36 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=42.5
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhcc
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGL 142 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~ 142 (391)
..+|+.++-++.|+++ .|.++.+||..+|||.+||...+.+....|.+.+.
T Consensus 92 ~~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TTSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3578888887777665 58999999999999999999999988888876543
No 52
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=74.32 E-value=0.7 Score=36.49 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCccccccccCCcccccchhh
Q 016336 96 RDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.++ .-.+..|+.|.+|++|+...|+|.+||+|+-
T Consensus 63 s~R-~eV~klL~~G~syreIA~~~g~S~aTIsRv~ 96 (119)
T 3kor_A 63 SQR-LQVAKMIKQGYTYATIEQESGASTATISRVK 96 (119)
T ss_dssp HHH-HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 344 4456678999999999999999999999853
No 53
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=73.77 E-value=1.1 Score=38.71 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=32.1
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+..+.-.-..+++..|.++..||..+|||++|||+++..
T Consensus 6 ke~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 445555544444445789999999999999999999997654
No 54
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=73.60 E-value=1.3 Score=32.66 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 99 VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 99 l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
-...|..|+. ..+..+|+..||+.||+||+-..+++
T Consensus 15 es~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~ 50 (83)
T 1zs4_A 15 ESALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIP 50 (83)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHH
Confidence 3444555554 56789999999999999997555533
No 55
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=71.92 E-value=0.97 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCccccccccCCcccccchhhh
Q 016336 99 VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 99 l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
|-..|..+..|.++..||...|||++|+|.+++
T Consensus 22 ~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 22 VRNALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHc
Confidence 333444444499999999999999999998764
No 56
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=70.12 E-value=2.2 Score=41.61 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHHHH-hc--CCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 92 HLSFRDQVAIALRR-LS--SGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 92 ~l~~e~~l~i~L~~-L~--~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
.++..++-.+.|+| |. .+.++..||..||||+.||.++..+....|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888999999998 54 6789999999999999999999988888776
No 57
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=69.98 E-value=1.9 Score=42.24 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=41.3
Q ss_pred ccCHHHHHHHHHHH-hc--CCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 92 HLSFRDQVAIALRR-LS--SGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 92 ~l~~e~~l~i~L~~-L~--~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
.++..++-.+.|+| |. .+.++..||..+|||++||.++..+....|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888999999998 44 6789999999999999999999988888775
No 58
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=69.67 E-value=1.5 Score=33.11 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred cCCCCccccccccCCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+.+..+|+..+|+|++||++++....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4466788999999999999999876553
No 59
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=68.64 E-value=1.2 Score=39.20 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=51.6
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcC--------------CCCcccccc
Q 016336 52 GLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSS--------------GDSLMSIGD 117 (391)
Q Consensus 52 ~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~--------------g~~~~~l~~ 117 (391)
+-+.|...+.-.+.....++..+...+....... ..-...+++++|+-+|..++. ..+..+||.
T Consensus 124 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~--~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~ 201 (243)
T 3la7_A 124 PIEQVEQALKENPELSMLMLRGLSSRILQTEMMI--ETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAE 201 (243)
T ss_dssp EHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--HHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHH
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHH
Confidence 4556666666666555555554443322211000 001236889999999988752 356789999
Q ss_pred ccCCcccccchhhhHHHH
Q 016336 118 SCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 118 ~Fgvs~sTvs~~~~~~~~ 135 (391)
..|+++.||+|++.++.+
T Consensus 202 ~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 202 AIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHH
Confidence 999999999998766543
No 60
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=68.57 E-value=2.8 Score=42.84 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=41.6
Q ss_pred CccCHHHHHHHHHHHhc---CCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLS---SGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~---~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
..+|+.++-.+.|+|+- .|.++..||..||||.+||.++..+....|-.
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 35899999999998873 78899999999999999999988877665543
No 61
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=66.39 E-value=1.8 Score=37.10 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=36.8
Q ss_pred CccCHHHHHHHHHHHhcCC--CCccccccccCCcccccchhhh
Q 016336 91 KHLSFRDQVAIALRRLSSG--DSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g--~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+++|.-|+=--.++.|..| .++..+|..+|||++.|||++.
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 6899999999999999888 7999999999999999999864
No 62
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=66.10 E-value=1.6 Score=30.52 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 96 RDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.++++-.|.--....+..+||..+|+|++||++++...
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34454444432234677899999999999998876543
No 63
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=65.26 E-value=0.75 Score=32.24 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.8
Q ss_pred CccccccccCCcccccchhhh
Q 016336 111 SLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+..+||...|||++|||++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 456899999999999999764
No 64
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=65.25 E-value=1.4 Score=32.92 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCccccccccCCcccccchhhhHHHH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+..+|+..++++++||++++.+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999998766544
No 65
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=65.21 E-value=1.8 Score=37.09 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=46.9
Q ss_pred ccCHHHHHHHHHHHhcC-------CCCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSS-------GDSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEIK 157 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~-------g~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i~ 157 (391)
..+++++++-+|..++. ..+..+||...|++++||+|++.++.+. +.+.-...|.-.+.+.+.+++
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLETLQ 218 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHHHh
Confidence 46889999999998875 5678899999999999999988776541 222223345555555554443
No 66
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=64.88 E-value=1.8 Score=30.70 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHhcCC-CCccccccccCCcccccchhh
Q 016336 94 SFRDQVAIALRRLSSG-DSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 94 ~~e~~l~i~L~~L~~g-~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
--+++|..++.-+..| .+....|..|||+.||+..-+
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RV 51 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKV 51 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHH
Confidence 4588999999999999 799999999999999987533
No 67
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=64.54 E-value=3.8 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+.+..+++..+|++++||++.+.....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4789999999999999999998877655
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=64.35 E-value=1.8 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcC--CCCccccccccCCcccccchhhhHH
Q 016336 96 RDQVAIALRRLSS--GDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 96 e~~l~i~L~~L~~--g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+.+++-+|.-.+. +.+..+||..+||+++||.+.+.+.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566666666663 5678899999999999988876544
No 69
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=63.60 E-value=1.2 Score=30.66 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.6
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
....| ++..+|..+|+|++||++++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 34556 99999999999999999976
No 70
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=63.41 E-value=2.4 Score=36.04 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+++++|+.+|..++.. .+..+||...|++++||+|++.++.
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 468899999999988652 3567889999999999999876654
No 71
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=62.79 E-value=1.2 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCccccccccCCcccccchhh
Q 016336 110 DSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.++..+|..+||+++|||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999976
No 72
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=62.62 E-value=1.6 Score=35.55 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCccccccccCC-cccccchhhhH
Q 016336 97 DQVAIALRRLSSGDSLMSIGDSCGL-HHSTVSQVTWR 132 (391)
Q Consensus 97 ~~l~i~L~~L~~g~~~~~l~~~Fgv-s~sTvs~~~~~ 132 (391)
+..--.+.+|+.|.+.++++..+|| |.+|+++++.+
T Consensus 16 e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 16 EVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp THHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3444567788999999999999999 99999999876
No 73
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=61.80 E-value=2.7 Score=33.47 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHHHh---cCCCCccccccccCCcccccchhhhHHHH
Q 016336 97 DQVAIALRRL---SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 97 ~~l~i~L~~L---~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..++.+|+.+ ..+.+..+|+..+|++++||++.+.+...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3444455544 23458889999999999999998766543
No 74
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=61.76 E-value=2.6 Score=36.61 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=44.4
Q ss_pred CccCHHHHHHHHHHHhcCC----------CCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSG----------DSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEI 156 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g----------~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i 156 (391)
...+++++|+-+|..++.. .+..+||...|+++.||+|++.++... | ..-...|.-.+.+.+.++
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~d~~~L~~~ 225 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIEDIALLRDY 225 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEESCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEcCHHHHHHH
Confidence 4578999999999998642 346789999999999999988775431 2 222334444555444444
No 75
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=61.51 E-value=3.5 Score=34.73 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=45.4
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEI 156 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i 156 (391)
..+++++|+-+|..|+.. .+..+||...|+++.||+|++.++... +.+.-...|...+.+.+.++
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 187 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAALERE 187 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHH
Confidence 468999999999987642 356779999999999999988876542 22222344555555555444
No 76
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.24 E-value=3.5 Score=32.71 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 96 RDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+-.++..|..-..+.+..+|+..+|++++||++++.+..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 344555553445677999999999999999998776544
No 77
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=61.21 E-value=0.89 Score=32.05 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.1
Q ss_pred CCccccccccCCcccccchhhh
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.+..+||...|||++|||++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999763
No 78
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=60.75 E-value=2.8 Score=35.43 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+++++++-+|..|+.. .+..+||...|+++.||+|++.++.
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 468899999999887652 3556789999999999999876654
No 79
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=60.41 E-value=3 Score=31.03 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCCccccccccCCcccc-cchhhhHHHH
Q 016336 109 GDSLMSIGDSCGLHHST-VSQVTWRFVE 135 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sT-vs~~~~~~~~ 135 (391)
+.+..+|+..++++++| |++++.+...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999 9998877654
No 80
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=60.37 E-value=1.6 Score=32.05 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
-+..++++..|. ..|.+..+||..+|+|++||.+.+...
T Consensus 16 ~~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 16 AEIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp HHHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666776666 456888999999999999998866543
No 81
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=60.22 E-value=4.7 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=24.0
Q ss_pred cCCCCccccccccCCcccccchhhhHHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+.+..+|+..+|+|++||++.+.....
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44568999999999999999998866553
No 82
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=60.13 E-value=3.1 Score=33.97 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=29.9
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+++.+ .++..|.....+.+..+|+..++++++||++++.+..
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55544 4444555555566778999999999999998775543
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=60.13 E-value=9.5 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=29.7
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+. ++..|. -..+.+..+++..+|++++||++++.+...
T Consensus 30 ~l~~~~~~iL~~l~-~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLA-KSGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHH-HSCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3555443 333443 344678999999999999999997766543
No 84
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=60.06 E-value=3.3 Score=35.02 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=45.6
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEI 156 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i 156 (391)
..+++++|+-+|..|+.. .++.+||...|+++.||+|++.++.+. +.+.-...|...+.+.+.++
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 194 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKEL 194 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHHH
Confidence 468899999999988642 456789999999999999988776531 22222345555665555544
No 85
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=59.98 E-value=2.4 Score=33.48 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=21.8
Q ss_pred CCccccccccCCcccccchhhhHHHH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+..+|+..+++|++||++.+.....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57778999999999999998766554
No 86
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=59.71 E-value=2.9 Score=34.67 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHH---Hhc-----CCCCccccccccCCcccccchhhh---HHHHHHHHhccccc
Q 016336 92 HLSFRDQVAIALR---RLS-----SGDSLMSIGDSCGLHHSTVSQVTW---RFVEAMEQKGLQHL 145 (391)
Q Consensus 92 ~l~~e~~l~i~L~---~L~-----~g~~~~~l~~~Fgvs~sTvs~~~~---~~~~~l~~~~~~~i 145 (391)
.++.+-+.++.+. -+. .|.+...+|...|||++|++++.. .+...+.+.+..++
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~l 87 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 87 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 4667776666543 222 167889999999999999999887 34344444444444
No 87
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=59.68 E-value=3.3 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=39.5
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..+|+.++-++.|. ..|.++.+||...|+|.+||...+.+....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999998886 49999999999999999999988877766553
No 88
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=59.68 E-value=3.4 Score=35.60 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=35.2
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+++++++-+|..++.. .+..+||...|++++||+|++.++.
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 468999999999988652 3567899999999999999876653
No 89
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.62 E-value=3.3 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcC--CCCccccccccCCcccccchhhhH
Q 016336 96 RDQVAIALRRLSS--GDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 96 e~~l~i~L~~L~~--g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+++++-.|.-.+- ..+..+||..+|||++||.+.+.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4556656665542 457789999999999998876544
No 90
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=59.58 E-value=2.4 Score=33.85 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHh-cCCCCccccccccCCcccccchhhhHH
Q 016336 96 RDQVAIALRRL-SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 96 e~~l~i~L~~L-~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+.+++..| ++ ..+.+..+|+..+|++++||++++.+.
T Consensus 28 ~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 28 VGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp HHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555555 43 456788999999999999999877544
No 91
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=58.98 E-value=2.1 Score=36.87 Aligned_cols=44 Identities=23% Similarity=0.100 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHHhcC--------------CCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSS--------------GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~--------------g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+++++++-+|..++. ..+..+||...|+++.||+|++.++..
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35789999999988763 457788999999999999998877653
No 92
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=58.95 E-value=3.2 Score=35.26 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhh
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
..+++-++.......+..|.+...|+..+|+|+++|++++
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 5688888887777888889999999999999999999864
No 93
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.90 E-value=5.5 Score=32.51 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+-.++....-..+.+..+|+..+|++++||++++.+..
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555554333333334578999999999999999998776543
No 94
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=58.58 E-value=2 Score=36.70 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 97 DQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 97 ~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+++--...++..|.+...|+..+|||.+|+++++..
T Consensus 146 ~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 146 AEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344445556778999999999999999999997754
No 95
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=58.58 E-value=2.2 Score=30.13 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=23.9
Q ss_pred HHHhcCCCCccccccccCCcccccchhh
Q 016336 103 LRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 103 L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
-.+-..|.++.++|...|||++|++++-
T Consensus 18 ~~R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 18 KVRKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3456679999999999999999999864
No 96
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=58.29 E-value=4.7 Score=32.01 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+ .++..|. ..+.+..+|+..+|++++||++++.+..
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 355544 3444444 6778999999999999999998775543
No 97
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=58.21 E-value=10 Score=30.03 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=29.7
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+++.+...+.... ..+.+..+|+..+|++++||++++.+..
T Consensus 34 ~~lt~~~~~iL~~l~-~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 34 VALTNTQEHILMLLS-EESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp SCCCHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH-hCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356665543333222 3348889999999999999998776654
No 98
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=57.91 E-value=2.9 Score=36.02 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=60.9
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcC--------------CCCccccc
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSS--------------GDSLMSIG 116 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~--------------g~~~~~l~ 116 (391)
.+-+.|...+.-.+..-..++..+...+....... ..-...+++++++-+|..|+. ..+..+||
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~--~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA 184 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNNNL--ADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIA 184 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHH
Confidence 34566777776666655555555444332211000 001246899999999988742 35777899
Q ss_pred cccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHH
Q 016336 117 DSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAE 155 (391)
Q Consensus 117 ~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~ 155 (391)
...|+++.||+|++.++... +.+.-...|...+.+.+.+
T Consensus 185 ~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 224 (227)
T 3d0s_A 185 QLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLAR 224 (227)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHHHHHH
Confidence 99999999999988776531 2122223444455444433
No 99
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=57.74 E-value=1.9 Score=38.04 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=46.5
Q ss_pred ccCHHHHHHHHHHHhcC--------------CCCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSS--------------GDSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEI 156 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~--------------g~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i 156 (391)
..+++++|+-+|..++. ..+..+||...|+++.||+|++.++... +.+.-...|...+.+.+.++
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 225 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHL 225 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHHHHHHH
Confidence 46899999999987652 3477789999999999999988776542 22222334445555555555
Q ss_pred HH
Q 016336 157 KS 158 (391)
Q Consensus 157 ~~ 158 (391)
+.
T Consensus 226 a~ 227 (250)
T 3e6c_C 226 SE 227 (250)
T ss_dssp HT
T ss_pred Hc
Confidence 44
No 100
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=57.46 E-value=3.7 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=23.9
Q ss_pred cCCCCccccccccCCcccccchhhhHHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+.+..+|+..+|++++||++.+.+...
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35678889999999999999998766544
No 101
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=57.14 E-value=3.7 Score=32.83 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCCCccccccccCCcccccchhhhHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+.+..+|+..+|+|++||++++.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567888999999999999999776543
No 102
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=56.84 E-value=7.3 Score=34.33 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 90 GKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 90 ~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
...+++.++-.+.| ++.|.+..+||...|||.+||...+.+...-|
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35688888766555 68999999999999999999998887765544
No 103
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=56.71 E-value=2.3 Score=31.71 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=22.5
Q ss_pred cCCCCccccccccCCcccccchhhhHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
..+.+..+|+..+|+|++||++.+...
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 556788899999999999999876544
No 104
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=56.54 E-value=2.2 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.7
Q ss_pred CCCCccccccccCCcccccchhhhH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.+.+..+++..+|||.+||++.+..
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3478889999999999999998765
No 105
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=56.43 E-value=3.3 Score=31.68 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.....++++.......+.|+.+.+..|+||.+++.++...+
T Consensus 34 Wva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 34 WVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 44456999999999999999999999999999988766544
No 106
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=56.26 E-value=4 Score=30.43 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCcccc----ccccCCcccccchhhhHHHH
Q 016336 96 RDQVAIALRRLSSGDSLMSI----GDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l----~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+..++..|.. ..+.+..+| +..++++++||++++.+...
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444432 345677888 89999999999998877665
No 107
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=55.84 E-value=4.3 Score=32.55 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=28.7
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+++.+. ++..|. -..+.+..+|+..+|++++||++++.+..
T Consensus 38 lt~~~~~iL~~l~-~~~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 38 VTVGQRAILEGLS-LTPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp CCHHHHHHHHHHH-HSTTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555443 333443 34467889999999999999998775543
No 108
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=55.83 E-value=5.4 Score=35.04 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=38.2
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..++..++-++.| ++.|.++.+||...|+|.+||...+.+....|.
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4689888876655 579999999999999999999988877766553
No 109
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=55.80 E-value=2.4 Score=36.37 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=1.0
Q ss_pred ccCHHHHHHHHHHHhcC-------CCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSS-------GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~-------g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+++++++.+|..++. ..+..+||...|+++.||+|++.++..
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp CC-------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46788999999988763 457889999999999999999887653
No 110
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=55.73 E-value=3.7 Score=35.30 Aligned_cols=82 Identities=7% Similarity=0.028 Sum_probs=49.5
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcCC-----------CCccccccccC
Q 016336 52 GLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSSG-----------DSLMSIGDSCG 120 (391)
Q Consensus 52 ~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g-----------~~~~~l~~~Fg 120 (391)
+-+.|...+.-.+.--..++..+...+....... ..-...+++++|+-+|..++.. .+..+||...|
T Consensus 112 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg 189 (227)
T 3dkw_A 112 SNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEI--ETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLS 189 (227)
T ss_dssp ESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTT
T ss_pred eHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhC
Confidence 4455666665555544445444443332211000 0002357889999988776542 46678999999
Q ss_pred CcccccchhhhHHHH
Q 016336 121 LHHSTVSQVTWRFVE 135 (391)
Q Consensus 121 vs~sTvs~~~~~~~~ 135 (391)
+++.||+|++.++..
T Consensus 190 ~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 190 IQPETFSRIMHRLGD 204 (227)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998766543
No 111
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=55.50 E-value=4.5 Score=35.59 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
..+++.++-++.| ++.|.++.+||...|||.+||...+.+...-|.
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4689888876655 579999999999999999999988877766553
No 112
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=55.46 E-value=4.9 Score=31.52 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+...+...+-..+.+..+|+..+|++++||++++.+..
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443333333334667899999999999999998775544
No 113
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=55.21 E-value=6.2 Score=31.52 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=24.5
Q ss_pred cCHHH-HHHHHHHHhc-CCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLS-SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~-~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+ .++..|..-. .+.+..+|+..++++++||++++.+...
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 55544 3444444432 5788999999999999999998776544
No 114
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=54.81 E-value=6.1 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+-.++....-..+.+..+|+..+|++++||++++.+..
T Consensus 28 ~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3565554333333334568999999999999999998776543
No 115
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.36 E-value=7.4 Score=31.00 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=30.5
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 466544 34444444 45789999999999999999987765443
No 116
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=54.24 E-value=3.3 Score=35.65 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=35.7
Q ss_pred ccCHHHHHHHHHHHhcC--------------CCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSS--------------GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~--------------g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+++++|+-+|..++. ..+...||...|+++.||+|++.++..
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35789999999998873 146677999999999999998877653
No 117
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=54.14 E-value=4.9 Score=31.57 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=30.5
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.++..+. ++..|.. ..+.+..+|+..+|++++||++++.+...
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4665543 4444433 34789999999999999999997766544
No 118
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.06 E-value=4.8 Score=28.93 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=20.9
Q ss_pred CCCccccccccCCcccccchhhhHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
..+..+|+..+|+|++||++.+...
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678899999999999998876544
No 119
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=53.85 E-value=7.4 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=27.7
Q ss_pred cCHHH-HHHHHHHHh-cCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRL-SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L-~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+ .++..|+.. ..+.+..+|+..++++++||++++.+...
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55544 344445444 35789999999999999999987766543
No 120
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=53.62 E-value=2.9 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.3
Q ss_pred cCCCCccccccccCCcccccchhhh
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
..|.++..||...|||++|++++..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6789999999999999999998643
No 121
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=53.60 E-value=19 Score=28.84 Aligned_cols=81 Identities=14% Similarity=-0.024 Sum_probs=47.2
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCC-CCccCHHHHHHHHHHHhc--CCCCcccccccc--------
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTS-GKHLSFRDQVAIALRRLS--SGDSLMSIGDSC-------- 119 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~-~~~l~~e~~l~i~L~~L~--~g~~~~~l~~~F-------- 119 (391)
.+..+--..|++++.|+...+............ .+.++ ...++.+..-.+ +.++. ...+...|+..+
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~-~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~ 126 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPG-VIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCDN 126 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC-CCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCcc-CCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhccccc
Confidence 456677788999999999988876544322111 01111 234665533322 23333 235666777655
Q ss_pred C--CcccccchhhhHH
Q 016336 120 G--LHHSTVSQVTWRF 133 (391)
Q Consensus 120 g--vs~sTvs~~~~~~ 133 (391)
| +|.+||++++++.
T Consensus 127 g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 127 DTVPSVSSINRIIRTK 142 (149)
T ss_dssp TTSCCHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHH
Confidence 5 7888888877543
No 122
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=53.53 E-value=6.7 Score=31.06 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=31.6
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+++.+-..+....-..+.+..+|+..++++++||++++.+...
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 346665544433333346789999999999999999987766543
No 123
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.48 E-value=11 Score=28.88 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=46.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccC-CCCccCHHHHHHHHHHHhcC--CCCcccccccc---C----
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFT-SGKHLSFRDQVAIALRRLSS--GDSLMSIGDSC---G---- 120 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~-~~~~l~~e~~l~i~L~~L~~--g~~~~~l~~~F---g---- 120 (391)
.+-.+.-..|++++.|+...+............. +.+ +...++++..- ..+.++.. ..+...|+..+ |
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~-~~g~~~~~l~~~~~~-~i~~~~~~~~~~s~~~i~~~l~~~g~~~~ 111 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-IGGSKPRIATPEIEN-RIEEYKRSSPGMFSWEIREKLIREGVCDR 111 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCC-CSCCCCCSSCSTHHH-HHHHTTTTCTTCCHHHHHHHHHHTSSSCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhCCccccc-CCCCCCCcCCHHHHH-HHHHHHHhCcchHHHHHHHHHHHcCCccc
Confidence 3566778889999999998888765432221110 111 22345554332 22334433 35677777777 6
Q ss_pred ---CcccccchhhhH
Q 016336 121 ---LHHSTVSQVTWR 132 (391)
Q Consensus 121 ---vs~sTvs~~~~~ 132 (391)
+|.+||++++++
T Consensus 112 ~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 112 STAPSVSAISRLVRG 126 (128)
T ss_dssp TTCCCHHHHHHHC--
T ss_pred cCCcCHHHHHHHHHh
Confidence 588888887654
No 124
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=53.41 E-value=5.1 Score=31.97 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+-.++....-..+.+..+|+..+|++++||++++.+...
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46665544333333344778889999999999999998766544
No 125
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.12 E-value=4.4 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=28.9
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+++.+ .++..|..-..+.+..+|+..++++++||++++.+..
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 55444 3333443333356999999999999999998776654
No 126
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.93 E-value=3.1 Score=35.49 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHhcC-------CCCccccccccCCcccccchhhhHHHH-HHHHhccccccCCCHHHHHHHHH
Q 016336 93 LSFRDQVAIALRRLSS-------GDSLMSIGDSCGLHHSTVSQVTWRFVE-AMEQKGLQHLQWPSETEMAEIKS 158 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~-------g~~~~~l~~~Fgvs~sTvs~~~~~~~~-~l~~~~~~~i~~P~~~~~~~i~~ 158 (391)
.+++++++-+|..++. ..+..++|...|+++.||+|++.++.+ -+.+.-...|.-++.+.+.++++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIAF 213 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhh
Confidence 5789999999987752 246778999999999999998877654 12222334455566655555443
No 127
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=52.77 E-value=5.5 Score=31.50 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=28.2
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+. ++..|+ -..+.+..+|+..++++++||++++.+...
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILW-DESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHH-HSSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 555443 333333 234568889999999999999987765443
No 128
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=52.68 E-value=1.7 Score=37.65 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=42.3
Q ss_pred CHH-HHHHHHHHHhcC-------------CCCccccccccCCcccccchhhhHHHHH-HHHhccccccCCCHHHHHHH
Q 016336 94 SFR-DQVAIALRRLSS-------------GDSLMSIGDSCGLHHSTVSQVTWRFVEA-MEQKGLQHLQWPSETEMAEI 156 (391)
Q Consensus 94 ~~e-~~l~i~L~~L~~-------------g~~~~~l~~~Fgvs~sTvs~~~~~~~~~-l~~~~~~~i~~P~~~~~~~i 156 (391)
++. ++++-+|..++. ..+..+||...|+++.||+|++.++.+. +.+.-...|.-.+.+.+.++
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~ 223 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLAALEAL 223 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHHHHHHC
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCHHHHHHH
Confidence 445 899999988864 3578889999999999999988776541 22222334444555444433
No 129
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=52.65 E-value=2.8 Score=31.10 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCccccccccCCcccccchhhhHHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+.+..+|+..+|+|++||++.+....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999999876654
No 130
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=52.62 E-value=6.2 Score=31.66 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=29.7
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+- ++..| -..+.+..+|+..+|++++||++++.+...
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455443 33444 566788999999999999999987765443
No 131
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=52.16 E-value=6 Score=31.12 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=30.1
Q ss_pred cCHHH-HHHHHHHHhcC-CCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLSS-GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~-g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..+ .++..|+.-.. +.+..+|+..++++++||++++.+...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 55544 44445544432 679999999999999999987755443
No 132
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.90 E-value=4.5 Score=31.88 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..+. ++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 444443 3333333 34678889999999999999987766544
No 133
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=51.45 E-value=4.6 Score=35.91 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHhcCC-------------CCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSSG-------------DSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g-------------~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+++++|+-+|..|+.. .+..+||...|+++.||+|++.++.+
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 468899999999888653 34578999999999999998766543
No 134
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=51.23 E-value=6.1 Score=31.96 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=30.4
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..+ .++..|+.-..+.+..+|+..+|++++||++++.+...
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 45444 44444434455788999999999999999997766543
No 135
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=50.70 E-value=4.8 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.9
Q ss_pred CCccccccccCCcccccchhh
Q 016336 110 DSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.+.++||..||+|.+||.+.+
T Consensus 25 psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHH
Confidence 456689999999988877654
No 136
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=50.65 E-value=5.6 Score=36.82 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 99 VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 99 l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.-++..|...+.+..+|+..||||++||+|.+.+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~ 44 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR 44 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3455567778899999999999999999987654
No 137
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=50.52 E-value=3.5 Score=32.72 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=24.0
Q ss_pred HHHhcCCCCccccccccCCcccccchhh
Q 016336 103 LRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 103 L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
-.+-..|.++..+|..+|||++|++++-
T Consensus 78 ~~R~~~glsq~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 78 KVRKKLSLTQKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3356779999999999999999999863
No 138
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=50.00 E-value=5.7 Score=31.92 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+-..+...+-..+.+..+|+..++++++||++++.+..
T Consensus 44 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 44 DLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 4666554333333334567889999999999999998775543
No 139
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.83 E-value=5.9 Score=31.35 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.4
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+ .++..|+. ..+.+..+++..++++++||++++.+...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 55544 33444443 45679999999999999999987755443
No 140
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=49.65 E-value=5.9 Score=30.19 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=21.4
Q ss_pred CCCccccccccCCcccccchhhhHHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+..+|+..+|+|++||++.+....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46778999999999999998765543
No 141
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=49.52 E-value=6 Score=31.14 Aligned_cols=28 Identities=4% Similarity=0.037 Sum_probs=22.7
Q ss_pred cCCCCccccccccCCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+.+..+++..++++++||++++.+..
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467888999999999999998775543
No 142
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=49.50 E-value=7 Score=31.66 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=29.3
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 34444443 45678889999999999999987765443
No 143
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.49 E-value=5.7 Score=32.05 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=29.7
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+ .++.+|+. ..+.+..+|+..++++++||++++.+...
T Consensus 41 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 34444443 34678999999999999999987765543
No 144
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=49.47 E-value=10 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=31.3
Q ss_pred cCHH-HHHHHHHHHhcC--CCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFR-DQVAIALRRLSS--GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e-~~l~i~L~~L~~--g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++.. -.++..|+.-.. |.+..+|+..++++++||++++.+...
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5553 445555555443 379999999999999999998766544
No 145
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=49.33 E-value=6.9 Score=30.67 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=29.9
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.++..+. ++..|+ -..+.+..+++..+|++++||++++.+...
T Consensus 31 ~lt~~~~~iL~~l~-~~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIR-CAACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHH-HHSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hcCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3555444 333333 345678899999999999999998766544
No 146
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=49.31 E-value=1 Score=30.88 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.4
Q ss_pred CCCccccccccCCcccccchhh
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+.++..+|..+|||++|||++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4588999999999999999974
No 147
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=49.18 E-value=5.4 Score=31.41 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=29.7
Q ss_pred cCHHH-HHHHHHHHhc-CCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRD-QVAIALRRLS-SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~-~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+ .++..|+.-. .+.+..+|+..++++++||++++.+...
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 45433 3444444332 3778999999999999999998766543
No 148
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=49.15 E-value=3.3 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.1
Q ss_pred HhcCCCCccccccccCCcccccchhhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+...|.++.++|...|||++|++++.+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445688999999999999999998754
No 149
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=48.99 E-value=4.4 Score=31.87 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=30.6
Q ss_pred ccCHHH-HHHHHHHHhc--CCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLS--SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~--~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+ .++..|+. . .+.+..+|+..++++++||++++.+...
T Consensus 34 ~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 34444444 3 5678899999999999999998766544
No 150
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=48.98 E-value=2.9 Score=29.78 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=18.6
Q ss_pred CccccccccCCcccccchhhh
Q 016336 111 SLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
++..+|..+|||++||++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 378899999999999999864
No 151
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.98 E-value=9.3 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=29.9
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+ .++..|..-..+.+..+|+..+|++++||++++.+...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 354443 33334433245779999999999999999997765543
No 152
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=48.93 E-value=8.6 Score=31.16 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=28.7
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..++-.+.+..-....++.+||..+|+|++||++.+.+..+
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4444433333223344679999999999999999987766543
No 153
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=48.93 E-value=5.4 Score=32.03 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+-..+...+-..+.+..+|+..++++++||++++.+...
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35555533333333346778899999999999999987766543
No 154
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=48.92 E-value=4.9 Score=30.18 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=22.6
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
...+..+|+..+|+|++||++.+.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468889999999999999998766543
No 155
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=48.90 E-value=4.6 Score=33.36 Aligned_cols=44 Identities=9% Similarity=0.222 Sum_probs=31.0
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.++..+ .++..|.....+.+..+|+..++++++||++++.+...
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 466554 34444444455678999999999999999987765443
No 156
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=48.76 E-value=5.3 Score=35.11 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhcC-CCCc--cccccccCCcccccchhhhHHHH
Q 016336 94 SFRDQVAIALRRLSS-GDSL--MSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 94 ~~e~~l~i~L~~L~~-g~~~--~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+..+.++.+|+.|.. |.+. .+|+..++++++||++++.+...
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 446777778888753 6677 89999999999999987766543
No 157
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=48.63 E-value=7.3 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCCCCccccccccCCcccccchhhhHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
....++.+||..+|+|++||++.+.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345789999999999999998876554
No 158
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=48.59 E-value=3.5 Score=30.89 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=32.1
Q ss_pred CccCHHHHHHHHHHHhc--CCCCccccccccCCcccccchhhhHH
Q 016336 91 KHLSFRDQVAIALRRLS--SGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~--~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
..+++++.+.+.+-+-+ .|..+++|+...+++++||++++.+.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666666655555542 38999999999999999998876554
No 159
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=48.58 E-value=3.1 Score=27.98 Aligned_cols=44 Identities=14% Similarity=0.007 Sum_probs=31.0
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+-..|.++.++|...|||++|++++.+- . .-|+.+.+..+++.|
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~i~~~l 53 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIEKN---------K---YNPSLQLALKIAYYL 53 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT---------S---CCCCHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 3456889999999999999999986532 1 135555566666554
No 160
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=48.08 E-value=3.2 Score=28.44 Aligned_cols=26 Identities=8% Similarity=0.289 Sum_probs=22.2
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++.
T Consensus 12 r~~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 34568899999999999999999865
No 161
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.07 E-value=5.8 Score=31.54 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=29.0
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.++..+. ++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 3565443 3334433 3467888999999999999998775543
No 162
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=47.95 E-value=5.6 Score=32.31 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=28.8
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
++..+. ++..|+ -..+.+..+|+..+|++++||++++.+..
T Consensus 50 lt~~~~~iL~~l~-~~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 50 LSTAKMRALAILS-AKDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp CCHHHHHHHHHHH-HSCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 555443 333443 34467899999999999999998776544
No 163
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=47.75 E-value=6.4 Score=31.15 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=28.2
Q ss_pred cCHHH-HHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRD-QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~-~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+++.+ .++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 27 lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp CTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 44433 34444443 3467899999999999999998775543
No 164
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.71 E-value=4.5 Score=36.05 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 94 SFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 94 ~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 5 ~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 5 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444555555543 468889999999999999998876654
No 165
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=47.69 E-value=7.6 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.4
Q ss_pred cCCCCccccccccCCcccccchhhhHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
....++.+||..+|+|++||++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345799999999999999999876554
No 166
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.56 E-value=4.1 Score=34.10 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=0.9
Q ss_pred ccCHHHHHHHHHHHhc---CCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLS---SGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~---~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..+++++++-+|..+. ...+..+||...|+++.|+||+..+.+
T Consensus 148 ~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 148 MYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HC--------------------------------------------
T ss_pred cCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 3577888888877654 346788999999999999999987653
No 167
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=47.48 E-value=3.4 Score=28.18 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=22.3
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++.
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34568899999999999999999864
No 168
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=47.00 E-value=8.3 Score=35.04 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=50.2
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccc-cCCCHHHHHHHHHHHhHhhC
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHL-QWPSETEMAEIKSKFEKIQG 165 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i-~~P~~~~~~~i~~~f~~~~~ 165 (391)
.+|+..+-++.|+++ .|.++..+|...|++.+||...+.+....+.......| .--++.....+...+-+..|
T Consensus 111 ~Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~rILvVdD~~~~~~~l~~~L~~~g 184 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELG 184 (286)
T ss_dssp HHSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCEEEEECCSHHHHHHHHHHHHHTT
T ss_pred hCCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCcEEEEcCCHHHHHHHHHHhhccC
Confidence 367777888877776 68899999999999999999888888877776554333 22333344444444433334
No 169
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=46.76 E-value=6.1 Score=31.72 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=29.4
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+. ++..|+. ..+.+..+|+..++++++||++++.+..
T Consensus 38 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443 4444443 3467899999999999999998775543
No 170
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=46.60 E-value=3.7 Score=29.90 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++-
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 45579999999999999999999864
No 171
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=46.29 E-value=9.4 Score=30.83 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=23.2
Q ss_pred cCCCCccccccccCCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
....++.+||..+|+|++||++.+.+..
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567899999999999999998776543
No 172
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=46.24 E-value=3.6 Score=29.37 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=34.4
Q ss_pred HHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 102 ALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 102 ~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
--++...|.++.++|...|||++|++++.+- .-.-|+.+.+..+++.|
T Consensus 16 k~~R~~~gltq~elA~~~gis~~~is~~E~G-----------~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 16 KQYRKEKGYSLSELAEKAGVAKSYLSSIERN-----------LQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-----------SCCCCBHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHH
Confidence 3446678999999999999999999986532 01346666666666655
No 173
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=46.19 E-value=6.2 Score=35.32 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=35.4
Q ss_pred CccCHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 91 KHLSFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+..-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 8 ~~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 8 DYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666777777888763 568889999999999999998877654
No 174
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=46.06 E-value=3.5 Score=32.13 Aligned_cols=29 Identities=0% Similarity=0.029 Sum_probs=23.4
Q ss_pred cCCCCccccccccCCcccccchhhhHHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
....+..+|+..+|+|++|||+.+....+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 44567889999999999999998766543
No 175
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=45.93 E-value=3.6 Score=28.75 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.7
Q ss_pred HhcCCCCccccccccCCcccccchhhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+...|.++.++|...|||++|++++..
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 345688999999999999999998753
No 176
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=45.88 E-value=5.3 Score=30.46 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 98 QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 98 ~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++..| ...+.+..+|+..+|+|++||++.+.....
T Consensus 25 ~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 25 EILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444 345578889999999999999998766543
No 177
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=45.82 E-value=3.4 Score=30.83 Aligned_cols=32 Identities=19% Similarity=0.015 Sum_probs=24.4
Q ss_pred HHhcC-CCCccccccccCCcccccchhhhHHHH
Q 016336 104 RRLSS-GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 104 ~~L~~-g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..|+. +.+..+|+..+|+|++||++.+....+
T Consensus 30 ~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 30 CMLHNQELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp HHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444 457889999999999999988766543
No 178
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=45.32 E-value=7.4 Score=31.30 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
++..+-.++.+.+-..+.+..+|+..+|++++||++++.+...
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554433332222234578999999999999999987765443
No 179
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=45.24 E-value=4.3 Score=31.10 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+.+..+|+..+|+|++||++.+....+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567889999999999999998876654
No 180
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=45.23 E-value=5.6 Score=30.93 Aligned_cols=28 Identities=18% Similarity=-0.006 Sum_probs=23.0
Q ss_pred cCCCCccccccccCCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
....+..+|+..+|+|++||++.+....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~ 59 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457888999999999999999876544
No 181
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=45.15 E-value=9.2 Score=30.98 Aligned_cols=28 Identities=7% Similarity=0.149 Sum_probs=23.0
Q ss_pred cCCCCccccccccCCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
....++.+||..+|+|++||++.+.+..
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457899999999999999998765543
No 182
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=45.14 E-value=6.8 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=29.6
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.++..+- ++..|.. ..+.+..+|+..+|++++||++++.+..
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555443 4444443 3478899999999999999998775543
No 183
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.76 E-value=5.4 Score=32.05 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=28.9
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+++.+. ++..|.. ..+.+..+|+..+|++++||++++.+..
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443 3334433 3467899999999999999998775543
No 184
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=44.53 E-value=7.6 Score=30.91 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCCCccccccccCCcccccchhhhHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
...++.+|+..+|+|++|+++.+.+..
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~ 43 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALE 43 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999998765543
No 185
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=44.02 E-value=7.5 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=33.0
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhh
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
..+++.++.......+..|.+...||..+|+|+++|++++
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l 155 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANAL 155 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 5677777766666666889999999999999999998764
No 186
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=43.99 E-value=8.4 Score=31.06 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.0
Q ss_pred CCCccccccccCCcccccchhhhHHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
..++.+|+..+|+|++||++.+.+..
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999998776553
No 187
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=43.67 E-value=6.5 Score=30.86 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+.+..+++..+|+|++||++.+....+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3568889999999999999998866554
No 188
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=43.58 E-value=3.2 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.7
Q ss_pred cCCCCccccccccCCcccccchhhh
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
..| ++.++|...|||++||+++.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 347 999999999999999998754
No 189
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=43.48 E-value=4.1 Score=31.06 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHH--HHhcCCCCccccccccCCcccccchh
Q 016336 96 RDQVAIAL--RRLSSGDSLMSIGDSCGLHHSTVSQV 129 (391)
Q Consensus 96 e~~l~i~L--~~L~~g~~~~~l~~~Fgvs~sTvs~~ 129 (391)
.+.++-.| .+...|.++.++|...|||++|++++
T Consensus 34 ~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 34 AEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 34455444 35567999999999999999999986
No 190
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=43.43 E-value=3.2 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred cCCCCccccccccCCcccccchhh
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
..|.++.++|...|||++|++++.
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 468899999999999999999865
No 191
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=43.38 E-value=3.6 Score=28.67 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=32.3
Q ss_pred hcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
...|.++.++|...|||++|++++.+- . .-|+.+.+..+++.|
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~g---------~---~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCTN---------D---VQPSLETLFDIAEAL 60 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHTT---------S---SCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 356889999999999999999986532 1 236766777777765
No 192
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=43.31 E-value=4 Score=28.63 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=32.1
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++.+- ...-|+.+.+..++..|
T Consensus 16 r~~~g~sq~~lA~~~gis~~~i~~~e~g-----------~~~~~~~~~l~~ia~~l 60 (78)
T 3b7h_A 16 ITQQNLTINRVATLAGLNQSTVNAMFEG-----------RSKRPTITTIRKVCGTL 60 (78)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHCT-----------TCCCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHc
Confidence 3456889999999999999999986532 11246666666666655
No 193
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=43.05 E-value=5.1 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||..+|||.+|||++++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5679999999999999998875
No 194
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.01 E-value=6.6 Score=29.89 Aligned_cols=28 Identities=4% Similarity=0.014 Sum_probs=22.7
Q ss_pred cCCCCcccccccc-CCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSC-GLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~F-gvs~sTvs~~~~~~~ 134 (391)
..+.++.+|+..+ |+|++|+++.+.+..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le 53 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELE 53 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3457899999999 999999998775543
No 195
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=42.98 E-value=5.1 Score=36.85 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCccccccccCCcccccchhhhH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.+..+||..+|||.+|||++++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 36789999999999999998875
No 196
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=42.97 E-value=5.1 Score=28.77 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=27.3
Q ss_pred cCH-HHHHHHHHHHhcCCCCccccccccC----CcccccchhhhHH
Q 016336 93 LSF-RDQVAIALRRLSSGDSLMSIGDSCG----LHHSTVSQVTWRF 133 (391)
Q Consensus 93 l~~-e~~l~i~L~~L~~g~~~~~l~~~Fg----vs~sTvs~~~~~~ 133 (391)
++. +..++.+|+. ..+.+..+|+..++ ++.+||++++.+.
T Consensus 7 lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 7 ISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 454 3445556655 45678888998886 6889988876554
No 197
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=42.93 E-value=5.1 Score=34.17 Aligned_cols=37 Identities=16% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 99 VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 99 l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+--....+..|.+...|+..+|||.+|+++++...-.
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 3334445668999999999999999999998765433
No 198
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=42.91 E-value=10 Score=32.57 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=29.9
Q ss_pred ccCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 92 HLSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 92 ~l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.+++.+- ++..|+. ..+.+..+|+..++++++||++++.+.
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4666554 4444443 457899999999999999999877554
No 199
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=42.82 E-value=27 Score=28.54 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=22.7
Q ss_pred hcCCCCccccccccCCcccccchhhhHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
-+...+..+|+..||+|++||.+.+.+.
T Consensus 24 ~~~~ls~~eLa~~lgvSr~~vr~al~~L 51 (163)
T 2gqq_A 24 KDGRISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp HCSSCCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred hCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455688999999999999999876554
No 200
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=42.81 E-value=6.7 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.2
Q ss_pred CCccccccccCCcccccchhhhHH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.+++.+|...||+.||+||+-...
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhh
Confidence 467899999999999999965544
No 201
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=42.61 E-value=15 Score=33.06 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=36.9
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
..++..++-.+.|. +.|.++.+||...|||..||...+.+...-|
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 46888777666654 6999999999999999999998887766544
No 202
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=42.45 E-value=9.8 Score=32.68 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=44.0
Q ss_pred ccCHHHHHHHHHHHhc-------------CCCCccccccccCCcccccchhhhHHHH-HHHHhccccccCCCHHHHHHHH
Q 016336 92 HLSFRDQVAIALRRLS-------------SGDSLMSIGDSCGLHHSTVSQVTWRFVE-AMEQKGLQHLQWPSETEMAEIK 157 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~-------------~g~~~~~l~~~Fgvs~sTvs~~~~~~~~-~l~~~~~~~i~~P~~~~~~~i~ 157 (391)
..+++++++.+|..|+ -..+..+||...|+++.||+|++.++.+ -+.+.....|...+.+.+.+++
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~~ 229 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTA 229 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHHHHHHHh
Confidence 3688999999996543 2346678999999999999998877653 1222223445555655555443
No 203
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=42.37 E-value=7.6 Score=30.77 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=21.7
Q ss_pred CccccccccCCcccccchhhhHHHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+..+|+..+|++++||++++.+...
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 8999999999999999987766544
No 204
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=42.33 E-value=4.6 Score=29.09 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.4
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++.+- . .-|+.+.+..+++.|
T Consensus 21 r~~~glsq~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~i~~~l 64 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFENN---------P---DNTTLTTFFKILQSL 64 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHC---------G---GGCBHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcC---------C---CCCCHHHHHHHHHHh
Confidence 3456889999999999999999987532 1 225555666666654
No 205
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=42.29 E-value=10 Score=31.08 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
++..++-.+.+..-....++.+||..+|+|++||++.+.+..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444443333322233457899999999999999998775543
No 206
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=42.10 E-value=5.3 Score=37.10 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||..+|||.+|||++++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999998875
No 207
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=41.97 E-value=19 Score=27.78 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHH-HHhcCCCCccccccccCCcccccchhhhHH
Q 016336 61 KISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIAL-RRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 61 rms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L-~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.|+.+.|..|+++-. +..+ ++..+| -+|-.|.+-..++..+||++|-.++.+.+.
T Consensus 29 ~vsee~F~LLlelS~-----------------IrSe-kII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 29 SMSEEQFFLLIGISS-----------------IHSD-RVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp CSCHHHHHHHHHHSC-----------------CCCH-HHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC-----------------CCCH-HHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 577778888877622 3333 444445 489999999999999999999999876664
No 208
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=41.90 E-value=5.4 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCccccccccCCcccccchhhhH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.+..+||...|||.+|||++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999998864
No 209
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.89 E-value=6.8 Score=31.89 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=29.6
Q ss_pred cCHHHH-HHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 93 LSFRDQ-VAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+++.+- ++..|.. ..+.+..+|+..+|++++||++++.+...
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555443 3444433 34788999999999999999988766543
No 210
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.89 E-value=4.6 Score=27.90 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=30.8
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++..- . .-|+.+.+..++..|
T Consensus 22 r~~~g~s~~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~l~~~l 65 (74)
T 1y7y_A 22 RTAKGLSQETLAFLSGLDRSYVGGVERG---------Q---RNVSLVNILKLATAL 65 (74)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT---------C---SCCBHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCC---------C---CCCCHHHHHHHHHHh
Confidence 3346889999999999999999986531 1 235555566665544
No 211
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=41.83 E-value=1.7 Score=30.50 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=18.8
Q ss_pred CccccccccCCcccccchhh
Q 016336 111 SLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~ 130 (391)
++..+|..+||++++||+.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999976
No 212
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.75 E-value=6.1 Score=30.95 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+.+..+|+..+|+|++||++.+.....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568889999999999999998866543
No 213
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.72 E-value=5.5 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCccccccccCCcccccchhhhH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.+..+||..+|||.+|||++++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999998863
No 214
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.38 E-value=3.7 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.4
Q ss_pred hcCCCCccccccccCCcccccchhh
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
...|.++.++|...|||++|++++.
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3457899999999999999999865
No 215
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.37 E-value=12 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=20.1
Q ss_pred CCCcccccccc-----CCcccccchhhhHHH
Q 016336 109 GDSLMSIGDSC-----GLHHSTVSQVTWRFV 134 (391)
Q Consensus 109 g~~~~~l~~~F-----gvs~sTvs~~~~~~~ 134 (391)
..+..+|+..+ ++|.+||++.+..+.
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 45677888888 999999998765443
No 216
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=41.25 E-value=5.6 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=0.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||...|||.+|||++++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5679999999999999998865
No 217
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=40.99 E-value=5.1 Score=31.80 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+++.+-..+...+-..+.+..+|+..++++++||++++.+...
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 35555432222222234567889999999999999988766543
No 218
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=40.84 E-value=5.8 Score=36.85 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=0.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||...|||.+|||++++.
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5679999999999999998875
No 219
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.79 E-value=7.5 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcC--CCCcccccccc-----CCcccccchhhh
Q 016336 97 DQVAIALRRLSS--GDSLMSIGDSC-----GLHHSTVSQVTW 131 (391)
Q Consensus 97 ~~l~i~L~~L~~--g~~~~~l~~~F-----gvs~sTvs~~~~ 131 (391)
++..+.+..+.. ..+..+|+..| +||.+||++.+.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 344443433433 35566788888 999999998775
No 220
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=40.30 E-value=4.9 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++-
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 44578999999999999999999864
No 221
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=40.23 E-value=12 Score=30.16 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=28.1
Q ss_pred cCHHHH-HHHHHHHhcC-CCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRDQ-VAIALRRLSS-GDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~~-l~i~L~~L~~-g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
++..+- ++..|..-.. +.+..+|+..++++++|+++++.+..
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555443 3333433222 36788999999999999999876543
No 222
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=40.22 E-value=6 Score=36.80 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=0.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||..+|||.+|||++++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 5679999999999999998863
No 223
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=40.00 E-value=5.1 Score=27.85 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=31.9
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++..- . ..|+.+.+..+++.|
T Consensus 19 r~~~g~s~~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~ia~~l 62 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCSN---------K---SQPSLDMLVKVAELL 62 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT---------S---SCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 3456889999999999999999986531 1 236666666776655
No 224
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=39.95 E-value=5 Score=30.01 Aligned_cols=26 Identities=8% Similarity=-0.048 Sum_probs=22.6
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++..+|...|||++||+++-
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 44578999999999999999999864
No 225
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=39.88 E-value=5.4 Score=29.41 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=30.9
Q ss_pred hcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
...|.++.++|...|||++|++++..- . .-|+.+.+..+++.|
T Consensus 19 ~~~glsq~~lA~~~gis~~~is~~e~G---------~---~~p~~~~l~~ia~~l 61 (94)
T 2kpj_A 19 AKSEKTQLEIAKSIGVSPQTFNTWCKG---------I---AIPRMGKVQALADYF 61 (94)
T ss_dssp TTSSSCHHHHHHHHTCCHHHHHHHHTT---------S---CCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHhC---------C---CCCCHHHHHHHHHHH
Confidence 345788999999999999999986432 1 235666666666655
No 226
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=39.46 E-value=15 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=25.3
Q ss_pred ccCHHHHHHHHHHH------hcCCCC---ccccccccCCcccccchhhh
Q 016336 92 HLSFRDQVAIALRR------LSSGDS---LMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 92 ~l~~e~~l~i~L~~------L~~g~~---~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.+|.-+|++-.|.. |.-|.. -+.|+..||||++||.+.+.
T Consensus 12 ~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~ 60 (134)
T 4ham_A 12 QLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQ 60 (134)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 34555555444442 444543 35789999999999887543
No 227
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=39.30 E-value=4.2 Score=28.67 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.2
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++.
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 34558899999999999999999865
No 228
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=39.25 E-value=10 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=29.9
Q ss_pred cCHHHH-HHHHHHHh-cCCCCccccccccCCcccccchhhhHH
Q 016336 93 LSFRDQ-VAIALRRL-SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 93 l~~e~~-l~i~L~~L-~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+++.+- ++..|+.. ..+.+..+|+..+|++++||++++.+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 665543 44455543 357899999999999999999876554
No 229
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=39.11 E-value=13 Score=31.03 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.++..++-.+.+..-....++.+||..+|+|++||++.+.+..
T Consensus 14 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQ 56 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555554333333334467999999999999999998776543
No 230
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.57 E-value=4.4 Score=28.17 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=30.1
Q ss_pred hcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
...|.++.++|...|||++|++++..- . .-|+.+.+..+++.|
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~g---------~---~~~~~~~l~~ia~~l 57 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWERS---------E---TEPNGENLLALSKAL 57 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT---------S---SCCCHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 345889999999999999999986531 1 225555566665544
No 231
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=38.22 E-value=8.6 Score=33.40 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHHhc--------------C-CCCccccccccCCcc-cccchhhhHHHH-HHHHhccccccCCCHHHHH
Q 016336 92 HLSFRDQVAIALRRLS--------------S-GDSLMSIGDSCGLHH-STVSQVTWRFVE-AMEQKGLQHLQWPSETEMA 154 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~--------------~-g~~~~~l~~~Fgvs~-sTvs~~~~~~~~-~l~~~~~~~i~~P~~~~~~ 154 (391)
..+++++|+-+|..|+ - ..++.+||...|+++ .||+|++.++.. -+.+.....|.-.+.+.+.
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~ 216 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLK 216 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHH
Confidence 3578899999998764 1 456778999999999 599998887754 2222223455566666666
Q ss_pred HHHH
Q 016336 155 EIKS 158 (391)
Q Consensus 155 ~i~~ 158 (391)
+++.
T Consensus 217 ~~~~ 220 (238)
T 2bgc_A 217 RYAP 220 (238)
T ss_dssp HHCH
T ss_pred HHhc
Confidence 5543
No 232
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=38.18 E-value=9.9 Score=27.44 Aligned_cols=24 Identities=4% Similarity=0.026 Sum_probs=19.1
Q ss_pred CCCccccccccCCcccccchhhhH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
..+..+|+..|+||.+||.+.+.+
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 356678999999999998876533
No 233
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.03 E-value=4.4 Score=28.92 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.3
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++.
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~e 48 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34468999999999999999999864
No 234
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=37.90 E-value=8.4 Score=27.62 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 98 QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 98 ~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
.++-.|..+....++.++|...|||++|++++-+- . ..-|+.+.+..+++.|
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~g---------~--~~~p~~~~l~~ia~~l 67 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIETG---------R--IATPAFFTIAAVARVL 67 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTT---------C--CSSCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHcC---------C--CCCCCHHHHHHHHHHh
Confidence 35666666666668889999999999999986532 1 1135555556665554
No 235
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=37.78 E-value=7.9 Score=28.46 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=23.5
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+.+..+++..+|+|++||++.+.+...
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578889999999999999998766544
No 236
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=37.74 E-value=5.7 Score=32.23 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCccccccccCCcccccchhhhHHHH
Q 016336 98 QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 98 ~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.++..|.. ..+.+..+|+..++++++||++++.+...
T Consensus 54 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 54 PFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 45678999999999999999998766543
No 237
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.62 E-value=13 Score=30.91 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=28.2
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
++..++-.+.+..-....++.+||..+|+|++||++.+.+..
T Consensus 25 ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444443333333333457899999999999999988765543
No 238
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=37.49 E-value=8.2 Score=33.81 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhc-CCCCc--cccccccCCcccccchhhhHHH
Q 016336 96 RDQVAIALRRLS-SGDSL--MSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 96 e~~l~i~L~~L~-~g~~~--~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+.++.+|+.|. .|.+. .+||..++++++||++++.+..
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777777774 35555 8999999999999998766554
No 239
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=37.34 E-value=8.1 Score=34.18 Aligned_cols=41 Identities=34% Similarity=0.381 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 95 FRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 95 ~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555556666654 467889999999999999998876654
No 240
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=37.19 E-value=6.8 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=31.2
Q ss_pred hcCCCCccccccccC--CcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 106 LSSGDSLMSIGDSCG--LHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 106 L~~g~~~~~l~~~Fg--vs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
...|.++.++|...| +|++|++++-+- . .-|+.+.+..+++.|
T Consensus 18 ~~~glsq~~lA~~~g~~is~~~i~~~e~g---------~---~~~~~~~l~~la~~l 62 (71)
T 2ewt_A 18 TQQGLSLHGVEEKSQGRWKAVVVGSYERG---------D---RAVTVQRLAELADFY 62 (71)
T ss_dssp HHTTCCHHHHHHHTTTSSCHHHHHHHHHT---------C---SCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCcCCHHHHHHHHCC---------C---CCCCHHHHHHHHHHH
Confidence 356889999999999 999999886431 1 236666666776655
No 241
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.85 E-value=14 Score=29.13 Aligned_cols=26 Identities=4% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCccccccccCCcccccchhhhHHHH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+...||..+|++.+||.+++.....
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56778999999999999887755443
No 242
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.84 E-value=6.2 Score=28.04 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.1
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||++|++++.
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 19 RKEASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 33468899999999999999999864
No 243
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=36.74 E-value=8.4 Score=33.22 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHHhcCCCCccccccccCCcccccchhhhH
Q 016336 103 LRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 103 L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
...+..|.+...|+..+|+|.+|+.+++..
T Consensus 169 ~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 169 VEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 344568999999999999999999987654
No 244
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=36.64 E-value=8.9 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.4
Q ss_pred CCCCccccccccCCcccccchhhhHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
...++.+|+..+|+|++|+++.+.+..+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4579999999999999999988766544
No 245
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.62 E-value=6.2 Score=29.13 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=32.4
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++.+- . -|+.+.+..+++.|
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G---------~----~~s~~~l~kIa~~L 75 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKN---------E----NVSLTVLLAICEYL 75 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT---------C----CCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC---------C----CcCHHHHHHHHHHH
Confidence 4456899999999999999999986532 1 25666677777766
No 246
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=36.14 E-value=4.9 Score=36.91 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.2
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||...|||.+|||++++.
T Consensus 4 ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5678999999999999998764
No 247
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=36.06 E-value=6.4 Score=32.30 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=23.8
Q ss_pred cCCCCccccccccCCcccccchhhhHHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
....+..+|+..+|++++||++.+....+
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~ 97 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45578889999999999999998766544
No 248
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=36.04 E-value=7.6 Score=31.83 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=0.0
Q ss_pred hcCCCCccccccccCCcccccchh
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQV 129 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~ 129 (391)
...|.++.++|...|||++|++++
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~ 34 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRY 34 (158)
T ss_dssp ------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 456889999999999999999997
No 249
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=35.80 E-value=11 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCCccccccccCCcccccchhhhHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+.+...++..+|||++||++.+.+..
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 457888999999999999998776644
No 250
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.39 E-value=4.4 Score=29.61 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.6
Q ss_pred hcCCCCccccccccCCcccccchhhh
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
...|.++.++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999998753
No 251
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=35.21 E-value=5.4 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCccccccccCCcccccchhhhH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.+..+||..+|||.+|||++++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 35678999999999999998753
No 252
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.03 E-value=5 Score=37.02 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.7
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+..+||...|||.+|||++++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 3568999999999999998763
No 253
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=34.69 E-value=5.1 Score=30.10 Aligned_cols=29 Identities=24% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCCCccccccccCCcccccchhhhHHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVEA 136 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~ 136 (391)
.+.+..+++..+|+|++|||+.+....++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34678899999999999999998876665
No 254
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=34.56 E-value=14 Score=32.94 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=24.6
Q ss_pred hcCCCCccccccccCCcccccchhhhHHHH
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
-..+.+..+||..+|+++|||++.+.+..+
T Consensus 163 ~~~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 163 ETKGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp HHTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999999998766543
No 255
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=34.22 E-value=10 Score=29.14 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=30.5
Q ss_pred ccCHHH-HHHHHHHHhcCCCCccccccccC----CcccccchhhhHHHH
Q 016336 92 HLSFRD-QVAIALRRLSSGDSLMSIGDSCG----LHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~-~l~i~L~~L~~g~~~~~l~~~Fg----vs~sTvs~~~~~~~~ 135 (391)
.+++.+ .++.+|+. ..+.+..+|+..++ ++++||++++.+...
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 355544 44445554 56788889999998 889999998877654
No 256
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=34.12 E-value=7 Score=32.92 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHhcCCCCccccccccCCcccccchhhh
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.++..|.++..|+..+|||.+||++++.
T Consensus 153 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 153 NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3456899999999999999999998764
No 257
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.01 E-value=8.2 Score=28.10 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 103 LRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 103 L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
-.+...|.++.++|...|||++|++++.+- . .-|+.+.+..+++.|
T Consensus 20 ~~r~~~glsq~~lA~~~gis~~~is~~e~g---------~---~~p~~~~l~~la~~l 65 (91)
T 1x57_A 20 QGRQSKGLTQKDLATKINEKPQVIADYESG---------R---AIPNNQVLGKIERAI 65 (91)
T ss_dssp HHHHTTTCCHHHHHHHHTSCHHHHHHHHHT---------C---SCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHH
Confidence 345567899999999999999999886532 1 236666667777766
No 258
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=33.77 E-value=9.6 Score=34.14 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+..-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666777777888863 578889999999999999998876554
No 259
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=33.74 E-value=9.4 Score=30.38 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHhcC-CCCcccccccc-CCcccccchhhhHHHH
Q 016336 103 LRRLSS-GDSLMSIGDSC-GLHHSTVSQVTWRFVE 135 (391)
Q Consensus 103 L~~L~~-g~~~~~l~~~F-gvs~sTvs~~~~~~~~ 135 (391)
|..|.. +.++.+|+..+ ||+++|+++.+.+...
T Consensus 41 L~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 41 LVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp HHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 334443 46889999999 7999999998766544
No 260
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=33.27 E-value=6.7 Score=29.53 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.0
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+.++|+..||||++||++.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~ 58 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAV 58 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4568999999999999986543
No 261
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.10 E-value=13 Score=32.32 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHH
Q 016336 96 RDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 96 e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+..+-+++.|.. +.+..+||..++++++||++++.+..
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3445556666543 46788999999999999998765543
No 262
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=32.64 E-value=7 Score=29.81 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=29.7
Q ss_pred CccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhh
Q 016336 91 KHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.+.++.+.|.-.| +-..|.++.++|...|||++|++++.+
T Consensus 10 ~~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 10 RPIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456666554322 345789999999999999999998754
No 263
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.62 E-value=19 Score=31.48 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhH
Q 016336 62 ISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 62 ms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
|+....+.+.+.|+..+..-. + ..|..++.| +.|+..||||+++|...+..
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~--l--~pG~~LpsE----------------~~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGR--L--KIGDHLPSE----------------RALSETLGVSRSSLREALRV 51 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTS--S--CTTCBCCCH----------------HHHHHHHTCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCC--C--CCCCcCCCH----------------HHHHHHHCCCHHHHHHHHHH
Confidence 455556666666665554311 1 124445433 36889999999998765543
No 264
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=32.47 E-value=9.5 Score=29.84 Aligned_cols=25 Identities=20% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCCccccccccCCcccccchhhhH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.|.++.++|...|||++|++++-+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5889999999999999999998654
No 265
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=32.27 E-value=18 Score=28.41 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=17.7
Q ss_pred CccccccccCCcccccchhhhHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+-+.|+..||||++||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56789999999999998765443
No 266
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=32.23 E-value=8.1 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.093 Sum_probs=22.8
Q ss_pred HhcCCCCccccccccCCcccccchhhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+...|.++.++|...|||++|++++.+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445688999999999999999998653
No 267
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=31.89 E-value=6.7 Score=29.48 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=22.9
Q ss_pred HhcCCCCccccccccCCcccccchhhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+...|.++.++|...|||++|++++.+
T Consensus 27 r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 27 LDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344588999999999999999998754
No 268
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.89 E-value=8 Score=29.03 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.1
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...||+++|++++-
T Consensus 37 R~~~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 37 RLEKGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34468899999999999999999864
No 269
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=31.77 E-value=9.3 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.0
Q ss_pred HHhcCCCCccccccccCCcccccchhhh
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.+...|.++.++|...|||+++++++.+
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3466799999999999999999998653
No 270
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=31.54 E-value=12 Score=29.88 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=29.8
Q ss_pred cCHH-HHHHHHHHHhcCCCCccccccccC----CcccccchhhhHHHH
Q 016336 93 LSFR-DQVAIALRRLSSGDSLMSIGDSCG----LHHSTVSQVTWRFVE 135 (391)
Q Consensus 93 l~~e-~~l~i~L~~L~~g~~~~~l~~~Fg----vs~sTvs~~~~~~~~ 135 (391)
+++. ..++.+|+....+.+..+|+..++ ++.+||++++.+...
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 5543 445555554445788899999997 899999887765543
No 271
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=31.22 E-value=6.3 Score=36.77 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCccccccccCCcccccchhhh
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
.+..+||...|||.+|||++++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 3567899999999999999875
No 272
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=31.01 E-value=11 Score=33.87 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 92 HLSFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
.+..-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45566677777777763 467889999999999999998877654
No 273
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=30.63 E-value=13 Score=32.52 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=23.8
Q ss_pred CCCccccccccCCcccccchhhhHHHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+.++..+|..+++|++|||+.+.+...
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456899999999999999999888776
No 274
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=30.60 E-value=9.1 Score=28.85 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.5
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++..+|...|||++|++++.+- -..-|+.+.+..++..|
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~g-----------~~~~p~~~~l~~ia~~l 54 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIERN-----------LQTNPSIQFLEKVSAVL 54 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT-----------CCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999987532 01246666666666655
No 275
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=30.40 E-value=16 Score=31.81 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHh--cCCCCccccccccCCcccccchhhhH
Q 016336 99 VAIALRRL--SSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 99 l~i~L~~L--~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+.-.|..+ ..|.++.++|..+|+|++|++++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 55555544 35779999999999999999998764
No 276
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=30.39 E-value=11 Score=28.58 Aligned_cols=28 Identities=4% Similarity=-0.101 Sum_probs=22.3
Q ss_pred cCCCCcccccccc-CCcccccchhhhHHH
Q 016336 107 SSGDSLMSIGDSC-GLHHSTVSQVTWRFV 134 (391)
Q Consensus 107 ~~g~~~~~l~~~F-gvs~sTvs~~~~~~~ 134 (391)
..+.++.+|+..+ |++++|+++.+.+..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le 64 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLC 64 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHH
Confidence 3457899999999 599999998775543
No 277
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=30.22 E-value=14 Score=27.89 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHHHHHHhc-----CCCCccccccccCCcccccchhhhHH
Q 016336 98 QVAIALRRLS-----SGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 98 ~l~i~L~~L~-----~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.++..|+..+ ...++..|+...++++||+++.+.+.
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rL 60 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQL 60 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHH
Confidence 3444466553 23588899999999999999876554
No 278
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.15 E-value=7.5 Score=28.51 Aligned_cols=37 Identities=16% Similarity=-0.016 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhh
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
..+.+.|--. +-..|.++.++|...|||++|++++.+
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3445555333 334578999999999999999998764
No 279
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=29.97 E-value=6.7 Score=29.93 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=23.1
Q ss_pred HhcCCCCccccccccCCcccccchhhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
+...|.++.++|...|||++|++++.+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455688999999999999999998753
No 280
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=29.90 E-value=10 Score=28.01 Aligned_cols=23 Identities=0% Similarity=-0.123 Sum_probs=18.5
Q ss_pred CCCccccccccCCcccccchhhh
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
..+..+|+..|+||.+||.+.+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 35667899999999999887653
No 281
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=29.73 E-value=9.3 Score=29.31 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=28.0
Q ss_pred CHHHHHHHHHH--HhcCCCCccccccccCCcccccchhh
Q 016336 94 SFRDQVAIALR--RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 94 ~~e~~l~i~L~--~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.....++-.|. +...|.++.++|...|||++|++++-
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 44455555554 44578999999999999999999864
No 282
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=29.71 E-value=13 Score=31.38 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
.++..+. -.|.+|+.|.+...|+...++|..||..++.+...-|
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 4666554 3567788999999999999999999998887776655
No 283
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=29.53 E-value=8.2 Score=29.36 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.3
Q ss_pred CccccccccCCcccccchhhhHHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+.++|+..||||++||.+.+....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 566899999999999988665543
No 284
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=29.42 E-value=14 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhcCCC--CccccccccCCcccccchhh
Q 016336 94 SFRDQVAIALRRLSSGD--SLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 94 ~~e~~l~i~L~~L~~g~--~~~~l~~~Fgvs~sTvs~~~ 130 (391)
..-+++.-++..|..|. +...||..+|+++++|.+++
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHH
Confidence 44566666666777665 55679999999998876654
No 285
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.42 E-value=9.5 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred HHhcCCCCccccccccCCcccccchhh
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.+...|.++.++|...|||++|++++-
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E 57 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNME 57 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 445678999999999999999999864
No 286
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=29.11 E-value=10 Score=29.76 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=32.0
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++.+- ...-|+.+.+..++..|
T Consensus 49 R~~~glTQ~eLA~~lGis~~~Is~iE~G-----------~~~~~s~~~l~~ia~~L 93 (120)
T 2o38_A 49 IDRARLSQAAAAARLGINQPKVSALRNY-----------KLEGFSVERLMTLLNAL 93 (120)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT-----------CCTTCCHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC-----------CCCCCCHHHHHHHHHHh
Confidence 4456899999999999999999986531 11135655666666654
No 287
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=28.94 E-value=11 Score=34.05 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=32.4
Q ss_pred CccCHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 91 KHLSFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 91 ~~l~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..+..-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346666777777777764 457889999999999999998766554
No 288
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=28.92 E-value=17 Score=27.70 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcccccccc-CCcccccchhhhHHHH
Q 016336 99 VAIALRRLSSGDSLMSIGDSC-GLHHSTVSQVTWRFVE 135 (391)
Q Consensus 99 l~i~L~~L~~g~~~~~l~~~F-gvs~sTvs~~~~~~~~ 135 (391)
++..|. ..+.++.+|+..+ |++++|+++.+.+...
T Consensus 27 IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 27 LMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 344443 3567899999999 9999999998766544
No 289
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.57 E-value=56 Score=24.90 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhc-CCCCccccccccCC-ccccc
Q 016336 49 PLKGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLS-SGDSLMSIGDSCGL-HHSTV 126 (391)
Q Consensus 49 ~~~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~-~g~~~~~l~~~Fgv-s~sTv 126 (391)
...+-++.-..++||+.+|..++... .... ...--..++-.+...|. ++.+..+||...|- +.+..
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~--G~s~----------~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F 89 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE--ETSY----------SQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYF 89 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT--TCCH----------HHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc--CCCH----------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHH
Confidence 35678899999999999999888653 2111 11223456777777776 67889999999996 46667
Q ss_pred chhhhHH
Q 016336 127 SQVTWRF 133 (391)
Q Consensus 127 s~~~~~~ 133 (391)
++.+++.
T Consensus 90 ~r~Fk~~ 96 (120)
T 3mkl_A 90 IYVFRNY 96 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 290
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.41 E-value=21 Score=29.20 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCCccccccccCCcccccchhhhHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
...++.+||..+|+|.+||.+.+.+..
T Consensus 16 ~~~s~~~la~~lg~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 16 STLAVADLAKKVGLSTTPCWRRIQKME 42 (162)
T ss_dssp SCSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346888999999999999998776543
No 291
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.18 E-value=8.2 Score=29.47 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.3
Q ss_pred HhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
+...|.++.++|...|||++|++++-+- . .-|+.+.+..++..|
T Consensus 18 r~~~glsq~~lA~~~gis~~~i~~~e~g---------~---~~p~~~~l~~la~~l 61 (114)
T 3op9_A 18 KKEHGLKNHQIAELLNVQTRTVAYYMSG---------E---TKPDIEKLIRLATYF 61 (114)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHHT---------S---SCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHHHHHHHHHHh
Confidence 4456899999999999999999986431 1 236666667777665
No 292
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=27.94 E-value=8.7 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCccccccccCCcccccchhh
Q 016336 101 IALRRLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 101 i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+--++...|.++..+|...|||++|++++-
T Consensus 95 lk~lR~~~glTQ~elA~~LGvsr~tis~yE 124 (170)
T 2auw_A 95 FGDWMHRNNLSLTTAAEALGISRRMVSYYR 124 (170)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 334567889999999999999999998853
No 293
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.70 E-value=20 Score=28.73 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=21.0
Q ss_pred CCccccccccCCcccccchhhhHHH
Q 016336 110 DSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 110 ~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
.+..+|+..++++++|+++++.+..
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHH
Confidence 6888999999999999999876653
No 294
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=27.50 E-value=12 Score=28.51 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=30.2
Q ss_pred cCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
..|.++.++|...|||++|++++-.- -.-|+.+.+..+++.|
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~G------------~~~p~~~~l~~ia~~l 88 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYERG------------TATPDQNILSKMERVL 88 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTTT------------CSCCCHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCHHHHHHHHHHH
Confidence 55889999999999999999886431 1236665666666654
No 295
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=27.41 E-value=13 Score=34.82 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCccccccccCCcccccchhhhHHH
Q 016336 98 QVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 98 ~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+++..|++ ..+.++.+|+..||+|++||++.+.+..
T Consensus 24 ~iL~~l~~-~~~~t~~eLa~~l~vs~~Tv~r~l~~Le 59 (345)
T 2o0m_A 24 QILRNIYW-MQPIGRRSLSETMGITERVLRTETDVLK 59 (345)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444443 4689999999999999999999876643
No 296
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=26.99 E-value=19 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHhcCC-CC--cccccccc-CCcccccchhhhHHHH
Q 016336 102 ALRRLSSG-DS--LMSIGDSC-GLHHSTVSQVTWRFVE 135 (391)
Q Consensus 102 ~L~~L~~g-~~--~~~l~~~F-gvs~sTvs~~~~~~~~ 135 (391)
.|+.|..| .+ +.+|+..+ |+|++|+++.+.+...
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 34445555 45 78999999 9999999988766544
No 297
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=26.35 E-value=45 Score=28.34 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccc
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHL 145 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i 145 (391)
..++...+..+++..+||+..|+.+....+.+.+....+.++
T Consensus 154 ~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~ 195 (207)
T 1c9b_A 154 QASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDF 195 (207)
T ss_dssp HTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSC
T ss_pred HHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHH
Confidence 344445667789999999999999988887777665544433
No 298
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=26.02 E-value=14 Score=28.54 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.8
Q ss_pred HhcCCCCccccccccCCcccccchhh
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
+...|.++.++|...|||+++++++-
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE 41 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIE 41 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 55678999999999999999999864
No 299
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=25.87 E-value=14 Score=33.06 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHhcC---CCCccccccccCCcccccchhhhHHHH
Q 016336 94 SFRDQVAIALRRLSS---GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 94 ~~e~~l~i~L~~L~~---g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
..-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 3 ~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 3 GTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp CHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666667777764 357889999999999999998766554
No 300
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=25.78 E-value=22 Score=29.92 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHHHHhc---CCCCccccccccCCcccccchhhhHH
Q 016336 97 DQVAIALRRLS---SGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 97 ~~l~i~L~~L~---~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
++..-.|..|. .+.+..+||..||||++||.+-+...
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L 60 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL 60 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444455554 23678899999999999999876543
No 301
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.71 E-value=10 Score=29.00 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHH--hcCCCCccccccccCCcccccchhh
Q 016336 94 SFRDQVAIALRR--LSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 94 ~~e~~l~i~L~~--L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
.....++-.|.. ...|.++.++|...|||++|++++-
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 445556655554 4568999999999999999999864
No 302
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=25.64 E-value=14 Score=31.62 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
.++..+. -.|.+|+.|.+...|+...++|..||..++.+...-|
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4666554 3567789999999999999999999998877655443
No 303
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=25.62 E-value=10 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.064 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCccccccccCCcccccchhhh
Q 016336 101 IALRRLSSGDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 101 i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
|.-++...|.++..||...|||+|+||++..
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 3344566799999999999999999999875
No 304
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.19 E-value=9.4 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=17.5
Q ss_pred ccccccccCCcccccchhhhH
Q 016336 112 LMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 112 ~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
..+++..+|||.+|+.+++..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 346889999999999998765
No 305
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.09 E-value=13 Score=28.99 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHhcCCCCccccccccCCcccccchhhhHHHHHHHHhccccccCCCHHHHHHHHHHH
Q 016336 104 RRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQKGLQHLQWPSETEMAEIKSKF 160 (391)
Q Consensus 104 ~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~~~~~~i~~P~~~~~~~i~~~f 160 (391)
.+...|.++..+|...|||++|++++-+- . .-|+.+.+..++..|
T Consensus 20 ~R~~~glsq~~lA~~~gis~~~is~~E~g---------~---~~p~~~~l~~ia~~l 64 (126)
T 3ivp_A 20 ARKKQGLTREQVGAMIEIDPRYLTNIENK---------G---QHPSLQVLYDLVSLL 64 (126)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHS---------C---CCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHCC---------C---CCCCHHHHHHHHHHH
Confidence 35567899999999999999999986421 1 236766677777765
No 306
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.95 E-value=36 Score=27.48 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhh
Q 016336 51 KGLDKFKSVFKISRRTFDYICSLVEE 76 (391)
Q Consensus 51 ~~~~~F~~~frms~~tF~~L~~~l~~ 76 (391)
.+..+.-..|++++.|+...+.....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35566777889999998888776543
No 307
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.49 E-value=12 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.5
Q ss_pred CccccccccCCcccccchhhhHHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+.+.|+..||||++||.+.+....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445789999999999987665543
No 308
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=24.13 E-value=60 Score=23.83 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=49.1
Q ss_pred CCCChhHHHhhcCCCHHHHHHHHHHhhhccccccCCcccCCCCccCHHHHHHHHHHHhcC-CCCccccccccCC-ccccc
Q 016336 49 PLKGLDKFKSVFKISRRTFDYICSLVEEKMVVKTGGFSFTSGKHLSFRDQVAIALRRLSS-GDSLMSIGDSCGL-HHSTV 126 (391)
Q Consensus 49 ~~~~~~~F~~~frms~~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~e~~l~i~L~~L~~-g~~~~~l~~~Fgv-s~sTv 126 (391)
+..+-++.-..++||+.+|..++...-..-. ...--..++..+...|.. +.+..+||...|- +.+..
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~-----------~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F 86 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF-----------QDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYF 86 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH-----------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHH
Confidence 3567889999999999999988876521100 111224566666666654 6788889998887 56666
Q ss_pred chhhhHH
Q 016336 127 SQVTWRF 133 (391)
Q Consensus 127 s~~~~~~ 133 (391)
++.+++.
T Consensus 87 ~r~Fk~~ 93 (103)
T 3lsg_A 87 ITKFKKY 93 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 309
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.34 E-value=34 Score=30.12 Aligned_cols=25 Identities=4% Similarity=-0.055 Sum_probs=21.1
Q ss_pred CCCCccccccccCCcccccchhhhH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
...+...|+..+|+|++||++.+..
T Consensus 24 g~~s~~ELa~~lglS~stVs~hL~~ 48 (232)
T 2qlz_A 24 MECYFSLLSSKVSVSSTAVAKHLKI 48 (232)
T ss_dssp TTTCSSSSCTTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4578889999999999999987644
No 310
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.29 E-value=33 Score=27.41 Aligned_cols=27 Identities=4% Similarity=0.049 Sum_probs=21.2
Q ss_pred CCCccccccccCCcccccchhhhHHHH
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTWRFVE 135 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~~~~~ 135 (391)
+.+...||..+|++.++|.+++...+.
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356778999999999999887765543
No 311
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.23 E-value=13 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=18.8
Q ss_pred CccccccccCCcccccchhhhHHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRFV 134 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~~ 134 (391)
+.+.|+..||||++||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345789999999999988765544
No 312
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=23.19 E-value=18 Score=30.21 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHHHHHH
Q 016336 93 LSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAM 137 (391)
Q Consensus 93 l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l 137 (391)
++..++- .|.+++.|.+...++..+++|..||..++.+...-|
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5554443 355678999999999999999999988776665544
No 313
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=23.05 E-value=13 Score=31.94 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.0
Q ss_pred hcCCCCccccccccCCcccccchhh
Q 016336 106 LSSGDSLMSIGDSCGLHHSTVSQVT 130 (391)
Q Consensus 106 L~~g~~~~~l~~~Fgvs~sTvs~~~ 130 (391)
...|.++.++|...|+|+||||++.
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHH
Confidence 4468899999999999999999984
No 314
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.90 E-value=25 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=30.5
Q ss_pred ccCHH-HHHHHHHHHhcCCCCccccccccC----CcccccchhhhHHHH
Q 016336 92 HLSFR-DQVAIALRRLSSGDSLMSIGDSCG----LHHSTVSQVTWRFVE 135 (391)
Q Consensus 92 ~l~~e-~~l~i~L~~L~~g~~~~~l~~~Fg----vs~sTvs~~~~~~~~ 135 (391)
.+++. ..++.+|+. ..+.+..+|+..++ ++.+||++++.+...
T Consensus 7 ~Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 7 EISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 35554 456666666 45788999999987 589999887766543
No 315
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.88 E-value=31 Score=25.84 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.1
Q ss_pred HhcCCCCccccccccCCcccccchhhhHH
Q 016336 105 RLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 105 ~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.+....+..++|..+|+|.+++++.+.+.
T Consensus 17 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 17 HFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445667789999999999999988765
No 316
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.56 E-value=30 Score=29.24 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=18.9
Q ss_pred CCCccccccccCCcccccchhhh
Q 016336 109 GDSLMSIGDSCGLHHSTVSQVTW 131 (391)
Q Consensus 109 g~~~~~l~~~Fgvs~sTvs~~~~ 131 (391)
..+.++||..||++++||++.+.
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHH
Confidence 46889999999999998766543
No 317
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=22.33 E-value=12 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCCccccccccC----CcccccchhhhHHH
Q 016336 96 RDQVAIALRRLSSGDSLMSIGDSCG----LHHSTVSQVTWRFV 134 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l~~~Fg----vs~sTvs~~~~~~~ 134 (391)
+..++.+|+. ..+.+..+|+..++ ++.+||++++.+..
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 4567777776 45788999999887 46788887765543
No 318
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=22.13 E-value=71 Score=26.82 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCccccccccCCcccccchhhhHHHHHHH
Q 016336 101 IALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAME 138 (391)
Q Consensus 101 i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~ 138 (391)
++-..++...+..+++...||+..|+.+..+++.+.+.
T Consensus 157 ~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 157 IASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 33334455677889999999999999888877776653
No 319
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.06 E-value=16 Score=28.96 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=16.9
Q ss_pred CccccccccCCcccccchhhhH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
+.+.|+..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3457889999999998875543
No 320
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.96 E-value=34 Score=25.09 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=21.2
Q ss_pred cCCCCccccccccCCcccccchhhhH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
.++.+....|...|||++|+++.+.+
T Consensus 62 ~~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 62 HTQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HTTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45667788999999999999886654
No 321
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=21.48 E-value=13 Score=25.53 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=17.0
Q ss_pred ccccccccCCcccccchhhhH
Q 016336 112 LMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 112 ~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
..+++..+|||++|+.+++.+
T Consensus 13 ~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 346788899999999987764
No 322
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=21.21 E-value=27 Score=29.68 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=21.4
Q ss_pred cCCCCccccccccCCcccccchhhhH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWR 132 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~ 132 (391)
....+..+|+..+|+|++||++.+.+
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34578889999999999999986644
No 323
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=21.01 E-value=22 Score=30.35 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHhcCCCCccccccccCCcccccchhhhHH
Q 016336 92 HLSFRDQVAIALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 92 ~l~~e~~l~i~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
.++..+.- .|.+|+.|.+...|+...++|..||..++.+.
T Consensus 159 ~Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l 198 (225)
T 3klo_A 159 KLTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNV 198 (225)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 36665543 45568899999999999999999998776554
No 324
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=20.89 E-value=27 Score=32.12 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCccccccc----cC---CcccccchhhhHHHH
Q 016336 96 RDQVAIALRRLSSGDSLMSIGDS----CG---LHHSTVSQVTWRFVE 135 (391)
Q Consensus 96 e~~l~i~L~~L~~g~~~~~l~~~----Fg---vs~sTvs~~~~~~~~ 135 (391)
.+.=++.+..+..|.+...++.. || +|++||.+++.++..
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 34445666777889988887766 55 999999999988753
No 325
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=20.62 E-value=26 Score=30.78 Aligned_cols=32 Identities=0% Similarity=0.068 Sum_probs=27.1
Q ss_pred CCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 108 SGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 108 ~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
...++...|...+||+|+||+.+.+.-+.+..
T Consensus 14 ~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 14 EAGNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 34589999999999999999999888777754
No 326
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.47 E-value=16 Score=28.82 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=18.2
Q ss_pred CccccccccCCcccccchhhhHH
Q 016336 111 SLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 111 ~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
+.+.|+..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 44578899999999998766554
No 327
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.41 E-value=34 Score=25.52 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=21.7
Q ss_pred cCCCCccccccccCCcccccchhhhHH
Q 016336 107 SSGDSLMSIGDSCGLHHSTVSQVTWRF 133 (391)
Q Consensus 107 ~~g~~~~~l~~~Fgvs~sTvs~~~~~~ 133 (391)
....+..++|..+|+|.+++++.+.+.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566789999999999999988765
No 328
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.02 E-value=22 Score=32.12 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHhcCCCCccccccccCCcccccchhhhHHHHHHHH
Q 016336 102 ALRRLSSGDSLMSIGDSCGLHHSTVSQVTWRFVEAMEQ 139 (391)
Q Consensus 102 ~L~~L~~g~~~~~l~~~Fgvs~sTvs~~~~~~~~~l~~ 139 (391)
++.-..+|.++...|...++|+|+||+.+.+.-+.+..
T Consensus 9 F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~ 46 (324)
T 1al3_A 9 IVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGI 46 (324)
T ss_dssp --------------------------------------
T ss_pred HHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 33333444499999999999999999999887776643
Done!