BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016337
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 31 GIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFF 90
G +F PT E L+ YL +G LI E+D+Y+++P L +KA FG+ YFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKAL-FGEKEWYFF 79
Query: 91 SRVQKKYKKGSIRERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPI 149
S +KY GS R A G+WK TG + + G +++L +Y + K
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGK-----APKGT 134
Query: 150 KTHWLMREYMLKRPKNDKESM-----ALCVVY 176
KT+W+M EY L P S LC +Y
Sbjct: 135 KTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 166
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 31 GIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFF 90
G +F PT E L+ YL +G LI E+D+Y+++P L +KA FG+ YFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKAL-FGEKEWYFF 76
Query: 91 SRVQKKYKKGSIRERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPI 149
S +KY GS R A G+WK TG + + G +++L +Y + K
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGK-----APKGT 131
Query: 150 KTHWLMREYMLKRPKNDKESM-----ALCVVY 176
KT+W+M EY L P S LC +Y
Sbjct: 132 KTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 31 GIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFF 90
G +F PT + L+ YL +G P+ P+I EVD+Y+++P L +A FG YFF
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRL-PV-PIIAEVDLYKFDPWDLPERAL-FGAREWYFF 74
Query: 91 SRVQKKYKKGSIRERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKP- 148
+ +KY GS R A G+WK TG V + G +++L +Y+ G+ P
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA-------GKAPR 127
Query: 149 -IKTHWLMREYML 160
+KT W+M EY L
Sbjct: 128 GVKTDWIMHEYRL 140
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 41 LIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFG---DGNMYFFSRVQKKY 97
+++ YLA SG DG + + D + YE KLK+K D G +G + F V
Sbjct: 55 IMYQYLA---SGKIDGTVSSWVPTADKFYYE--KLKTKFVDLGANYEGTIQGFV-VPSYV 108
Query: 98 KKGSIRERKAKGGFWKTGKCNTVRGKDGGTG----TERSLTYY 136
SI E K KG +K N + G D G G TE++L YY
Sbjct: 109 PISSISELKGKGDKFK----NKMIGIDAGAGTQIVTEQALNYY 147
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 263 SFQNTTDITFASW-GSISPAPNNNFP--LYSSNLNPAASTPERPSSNSFQNMINMMGVSS 319
++ D+T W G I P N+ +YS + PE P S F INM G+++
Sbjct: 29 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 88
Query: 320 AA 321
++
Sbjct: 89 SS 90
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 137 SYRHDPKPGEKPIKTHWLMREYMLKRPKNDKESMALCVVYFHGQRDNEDKQNSHPDVEAE 196
+YR P + + + + + + R + KES V FH +RD ED ++ +
Sbjct: 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138
Query: 197 GSPTRNNPA 205
G R A
Sbjct: 139 GRELRVQMA 147
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 263 SFQNTTDITFASW-GSISPAPNNNFP--LYSSNLNPAASTPERPSSNSFQNMINMMGVSS 319
++ D+T W G I P N+ +YS + PE P S F INM G+++
Sbjct: 28 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 87
Query: 320 AA 321
++
Sbjct: 88 SS 89
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 263 SFQNTTDITFASW-GSISPAPNNNFP--LYSSNLNPAASTPERPSSNSFQNMINMMGVSS 319
++ D+T W G I P N+ +YS + PE P S F INM G+++
Sbjct: 39 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 98
Query: 320 AA 321
++
Sbjct: 99 SS 100
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 263 SFQNTTDITFASW-GSISPAPNNNFP--LYSSNLNPAASTPERPSSNSFQNMINMMGVSS 319
++ D+T W G I P N+ +YS + PE P S F INM G+++
Sbjct: 34 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 93
Query: 320 AA 321
++
Sbjct: 94 SS 95
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 137 SYRHDPKPGEKPIKTHWLMREYMLKRPKNDKESMALCVVYFHGQRDNEDKQNSHPDVEAE 196
+YR P + + + + + + R + KES V FH +RD ED ++ +
Sbjct: 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115
Query: 197 GSPTR 201
G R
Sbjct: 116 GRELR 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,312,376
Number of Sequences: 62578
Number of extensions: 603253
Number of successful extensions: 804
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 15
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)