Query 016337
Match_columns 391
No_of_seqs 168 out of 889
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.2E-53 4E-58 388.6 15.7 149 24-180 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.1E-53 7E-58 385.8 14.7 150 24-181 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 16.2 70 0.0024 25.0 2.1 27 28-55 36-63 (74)
4 1kdl_A YOPD protein; yersinia, 14.9 72 0.0025 20.5 1.5 22 362-383 5-26 (26)
5 1jgn_B PAIP2, polyadenylate-bi 10.4 1.1E+02 0.0037 19.4 1.3 11 289-299 2-12 (26)
6 1f6k_A N-acetylneuraminate lya 7.7 1.2E+02 0.0041 28.4 1.0 20 26-46 104-123 (293)
7 3dz1_A Dihydrodipicolinate syn 7.7 1.3E+02 0.0044 28.6 1.2 20 26-47 107-126 (313)
8 2ehh_A DHDPS, dihydrodipicolin 7.6 1.2E+02 0.0042 28.4 1.0 20 26-46 100-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 7.6 1.2E+02 0.0042 28.3 1.0 20 26-46 101-120 (292)
10 3cpr_A Dihydrodipicolinate syn 7.4 1.3E+02 0.0043 28.6 1.0 20 26-46 116-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.2e-53 Score=388.60 Aligned_cols=149 Identities=32% Similarity=0.629 Sum_probs=133.7
Q ss_pred cCCCCCCcceecCChHHHHHHHHHHhhcCCCCCCCCCceeeccCCCCCccccccccccCCCceEEEEecccccccCCCcc
Q 016337 24 ETWKKVDGIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFFSRVQKKYKKGSIR 103 (391)
Q Consensus 24 ~~~~LPPGfRF~PTDEELV~~YL~rKv~G~pl~~~~~~I~evDVY~~ePWdLP~~~~~~gd~eWYFFs~r~rKy~nG~R~ 103 (391)
.++.|||||||+|||||||.|||++|+.|.++ +..+|+++|||++|||+||+.+.. ++++|||||++++||++|.|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~--~~~~I~evDvy~~~Pw~Lp~~~~~-g~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRL--PVPIIAEVDLYKFDPWDLPERALF-GAREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCC--SSSCCEECCGGGSCGGGSGGGCSS-CSSEEEEEEECCC-----CCS
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCC--CcCeeeecccccCCchhhhhhhcc-CCceEEEEeccccccCCCCCc
Confidence 46799999999999999999999999999999 778999999999999999998776 778999999999999999999
Q ss_pred eeccCCceEe-cCCceeeecCCCeEEEEEEeeeecccCCCCCCCCCcccCeEEEEEEeCCCCC----------CCCCeEE
Q 016337 104 ERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPIKTHWLMREYMLKRPKN----------DKESMAL 172 (391)
Q Consensus 104 nRatggGyWK-tG~~K~I~~~G~vIG~KKtLvFY~gr~~pk~G~~~~KTgWvMhEYrL~~~~~----------~~~d~VL 172 (391)
+|+|++|||| ||++|.|..+|.+||+||+|+||.|++ | +| .||+|+||||+|..+.. ..++|||
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~-p-~g---~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVl 162 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA-P-RG---VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVL 162 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESST-T-SC---EEEEEEEEEEEECSCC-----------CCSSEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCC-C-CC---CcCCeEEEEEEeCCCCCcccccccCCCCCCCEEE
Confidence 9999999999 999999999899999999999999998 7 88 99999999999987642 3579999
Q ss_pred EEEEEecC
Q 016337 173 CVVYFHGQ 180 (391)
Q Consensus 173 CRIykK~r 180 (391)
||||+|+.
T Consensus 163 Crvf~K~~ 170 (174)
T 3ulx_A 163 CRLYNKKN 170 (174)
T ss_dssp EEEEESCC
T ss_pred EEEEEcCC
Confidence 99998853
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.1e-53 Score=385.82 Aligned_cols=150 Identities=33% Similarity=0.624 Sum_probs=130.9
Q ss_pred cCCCCCCcceecCChHHHHHHHHHHhhcCCCCCCCCCceeeccCCCCCccccccccccCCCceEEEEecccccccCCCcc
Q 016337 24 ETWKKVDGIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFFSRVQKKYKKGSIR 103 (391)
Q Consensus 24 ~~~~LPPGfRF~PTDEELV~~YL~rKv~G~pl~~~~~~I~evDVY~~ePWdLP~~~~~~gd~eWYFFs~r~rKy~nG~R~ 103 (391)
..+.|||||||+|||||||.|||++|+.|.++ +..+|+++|||++|||+||+.+.. ++++||||+++++||++|.|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~--~~~~I~e~Diy~~~Pw~Lp~~~~~-g~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDF--SLQLIAEIDLYKFDPWVLPNKALF-GEKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCC--SSCCSEECCGGGSCGGGHHHHSSS-CSSEEEEEEECCC-------C
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCC--CCCeEeecccccCChhHhhchhhc-CCccEEEEeccccccCCCCcc
Confidence 46799999999999999999999999999999 788999999999999999998765 789999999999999999999
Q ss_pred eeccCCceEe-cCCceeeecCCCeEEEEEEeeeecccCCCCCCCCCcccCeEEEEEEeCCCCC-----CCCCeEEEEEEE
Q 016337 104 ERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPIKTHWLMREYMLKRPKN-----DKESMALCVVYF 177 (391)
Q Consensus 104 nRatggGyWK-tG~~K~I~~~G~vIG~KKtLvFY~gr~~pk~G~~~~KTgWvMhEYrL~~~~~-----~~~d~VLCRIyk 177 (391)
+|+|++|||| ||++|.|..++.+||+||+|+||.|++ | +| .||+|+||||+|..... ..++|||||||+
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~-p-~g---~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~ 164 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKA-P-KG---TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK 164 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESST-T-SC---EEEEEEEEEEEECCCC--------CCEEEEEEEE
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcC-C-CC---CcCCeEEEEEEcCCCccccCcccCCCEEEEEEEE
Confidence 9999999999 999999999889999999999999998 7 88 99999999999987642 468999999999
Q ss_pred ecCC
Q 016337 178 HGQR 181 (391)
Q Consensus 178 K~r~ 181 (391)
|+..
T Consensus 165 k~~~ 168 (171)
T 1ut7_A 165 KQSS 168 (171)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8753
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.23 E-value=70 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.4
Q ss_pred CCCcceecC-ChHHHHHHHHHHhhcCCCC
Q 016337 28 KVDGIKFKP-TAEVLIFVYLAGMVSGSTD 55 (391)
Q Consensus 28 LPPGfRF~P-TDEELV~~YL~rKv~G~pl 55 (391)
.|.|+.|.. |++||-. ||.+|+...-+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 467999998 8899877 89999987665
No 4
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.91 E-value=72 Score=20.48 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=16.2
Q ss_pred chhHHHHHHHhhcccceeeecc
Q 016337 362 NDDIQLLEQYLFENDQMWFQAF 383 (391)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (391)
+|-+||++||.-...|-|--||
T Consensus 5 kDvlql~qQy~qsh~qa~rAA~ 26 (26)
T 1kdl_A 5 KDVLRLIEQYVSSHTHAMKXXX 26 (26)
T ss_dssp HHHHHHHHHHTTTTCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4678999999988888886654
No 5
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=10.38 E-value=1.1e+02 Score=19.40 Aligned_cols=11 Identities=55% Similarity=0.682 Sum_probs=8.7
Q ss_pred ccCCCCCCCCC
Q 016337 289 YSSNLNPAAST 299 (391)
Q Consensus 289 ~~~~~~~~~~~ 299 (391)
.-|+|||.|+.
T Consensus 2 ~ks~lnp~ake 12 (26)
T 1jgn_B 2 VKSNLNPNAKE 12 (26)
T ss_dssp CCCSSCTTCCC
T ss_pred ccccCCcchhh
Confidence 46899998875
No 6
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.72 E-value=1.2e+02 Score=28.44 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.2
Q ss_pred CCCCCcceecCChHHHHHHHH
Q 016337 26 WKKVDGIKFKPTAEVLIFVYL 46 (391)
Q Consensus 26 ~~LPPGfRF~PTDEELV~~YL 46 (391)
+.+||- -|.|++++|+.||-
T Consensus 104 lv~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 104 SAVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 445664 48899999999874
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.67 E-value=1.3e+02 Score=28.58 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=14.7
Q ss_pred CCCCCcceecCChHHHHHHHHH
Q 016337 26 WKKVDGIKFKPTAEVLIFVYLA 47 (391)
Q Consensus 26 ~~LPPGfRF~PTDEELV~~YL~ 47 (391)
+.+||- |.||+++|+.||-.
T Consensus 107 lv~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 107 MIAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp EECCCT--TCCSHHHHHHHHHH
T ss_pred EECCCC--CCCCHHHHHHHHHH
Confidence 456674 56999999998643
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=7.60 E-value=1.2e+02 Score=28.39 Aligned_cols=20 Identities=25% Similarity=0.057 Sum_probs=15.2
Q ss_pred CCCCCcceecCChHHHHHHHH
Q 016337 26 WKKVDGIKFKPTAEVLIFVYL 46 (391)
Q Consensus 26 ~~LPPGfRF~PTDEELV~~YL 46 (391)
+.+|| |-|.||+++|+.||-
T Consensus 100 lv~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 100 LVVVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 44566 448899999999874
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=7.57 E-value=1.2e+02 Score=28.35 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=15.1
Q ss_pred CCCCCcceecCChHHHHHHHH
Q 016337 26 WKKVDGIKFKPTAEVLIFVYL 46 (391)
Q Consensus 26 ~~LPPGfRF~PTDEELV~~YL 46 (391)
+.+||- -|.||+++|+.||-
T Consensus 101 lv~~P~-y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 101 LTVTPY-YNRPSQEGLYQHFK 120 (292)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 455664 48899999999873
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=7.42 E-value=1.3e+02 Score=28.55 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=15.5
Q ss_pred CCCCCcceecCChHHHHHHHH
Q 016337 26 WKKVDGIKFKPTAEVLIFVYL 46 (391)
Q Consensus 26 ~~LPPGfRF~PTDEELV~~YL 46 (391)
+.+|| |-|.|++++|+.||-
T Consensus 116 lv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 45566 458899999999874
Done!