BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016339
(391 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255547744|ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis]
gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis]
Length = 500
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 319/397 (80%), Positives = 354/397 (89%), Gaps = 8/397 (2%)
Query: 1 MRVIVQQSEPSRTS------DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD 54
MRVI+Q PS + + + + GVELLCVVRA+LKKI+RRVLVGDKVVVGSIDWVD
Sbjct: 106 MRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVLVGDKVVVGSIDWVD 165
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
RRGMIENVFQRSTEILDPPVANVDHLL+LFSMDQPK+EPFALTRFLVEAESTGIPLTLAL
Sbjct: 166 RRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFLVEAESTGIPLTLAL 225
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NK ELVDEE L WKSRL +WGYEPLFCSVESKLGLDSL LR+QTTVIVGPSGVGKSS
Sbjct: 226 NKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQTTVIVGPSGVGKSS 285
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINALR+ P A D A+ DNWF+P+LGSKWFE+QRVGEVST+SGRGKHTTR+VSLLPLS G
Sbjct: 286 LINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGKHTTRNVSLLPLSAG 345
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294
GYLADTPGFNQPSLLKVTKQSLA+TFPEI++ML + PAKCSFN+CLHLGEPGC+V GDW
Sbjct: 346 GYLADTPGFNQPSLLKVTKQSLAETFPEIQKMLSSGGPAKCSFNDCLHLGEPGCIVNGDW 405
Query: 295 ERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 354
ERY +YFQLLDEIRIREEFQLRT+GTK+EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR
Sbjct: 406 ERYSFYFQLLDEIRIREEFQLRTYGTKKEGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 465
Query: 355 INQSILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
INQS + + DD+D+ +D ENDPI+RA++NENQ
Sbjct: 466 INQS--LLDELDELDDDDNLLDEENDPILRALKNENQ 500
>gi|449452897|ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis
sativus]
gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis
sativus]
Length = 504
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/407 (78%), Positives = 352/407 (86%), Gaps = 20/407 (4%)
Query: 1 MRVIVQQSEPSRTSDCND----------------KTGVELLCVVRALLKKIKRRVLVGDK 44
MRVIVQ + ND GVELLCVV+A+LKKIKRRVLVGDK
Sbjct: 102 MRVIVQTLPSQFSQSPNDDLERSGSLEDDSSKSSMLGVELLCVVKAVLKKIKRRVLVGDK 161
Query: 45 VVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
VVVGSIDWVDRRGMIENVFQRS+EILDPPVANVDHLL+LFSMDQP+LEPF LTRFLVEAE
Sbjct: 162 VVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAE 221
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
STGIPLTL LNK+ELVDEE L +WKSRL +WGY+PLFCSV++ GLDSL LRDQTTVI
Sbjct: 222 STGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTGAGLDSLAFILRDQTTVI 281
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
VGPSGVGKSSLINALR+S A+DA+D DNWF+PILGSKWFE+QRV EVST+SGRGKHTTR
Sbjct: 282 VGPSGVGKSSLINALRNSNRATDASDTDNWFDPILGSKWFEEQRVAEVSTRSGRGKHTTR 341
Query: 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284
HVSLLPLSGGGYLADTPGFNQPSL+K+TKQSLAQ FPEI++ML A+EPAKCSFN+CLHLG
Sbjct: 342 HVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLHASEPAKCSFNDCLHLG 401
Query: 285 EPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEP 344
EPGCV+KGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR KVG+MGV+QAEPRLE
Sbjct: 402 EPGCVIKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGEMGVKQAEPRLEL 461
Query: 345 KKHRRQSRKRINQSILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
KKHRRQSRKR+NQSILDELDE D++ E +PI+RA++NENQ
Sbjct: 462 KKHRRQSRKRVNQSILDELDE----LEDEDDLEETNPILRAMKNENQ 504
>gi|224137508|ref|XP_002322575.1| predicted protein [Populus trichocarpa]
gi|222867205|gb|EEF04336.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/392 (77%), Positives = 348/392 (88%), Gaps = 10/392 (2%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV PSR+ + D K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 1 MRVIVTAG-PSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 59
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS+EILDPPVANVDHLL+LFS++QP+L+ F LTRFL+EAESTGIP+TLALNKVE
Sbjct: 60 IENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRFLIEAESTGIPITLALNKVE 119
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD+EVL+ W SRL +WGYEPLFCSV+SK+GLD+L LRDQTTVI+GPSGVGKSSLINA
Sbjct: 120 LVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINA 179
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ D AD NWF+PI+GSKWFEDQRVGEVST++GRGKHTTR+VSLLPL GGGY+A
Sbjct: 180 LRNKPNSHDEAD--NWFDPIMGSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVA 237
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGF+QPSLLKVTKQSLAQ FPEI+ +L NEPAKC+F +CLH+GEPGC+VKGDWERY
Sbjct: 238 DTPGFSQPSLLKVTKQSLAQYFPEIRTVLSVNEPAKCTFKDCLHVGEPGCIVKGDWERYP 297
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
YFQLLDEI+IREEFQLRTFGTKRE +VRYK GDMGVQQ EPRLEPKKHRRQSRKRINQS
Sbjct: 298 LYFQLLDEIKIREEFQLRTFGTKREDNVRYKAGDMGVQQEEPRLEPKKHRRQSRKRINQS 357
Query: 359 ILDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
ILDEL+EL +D+ DL +DP++RA +N N
Sbjct: 358 ILDELNELANDE-----DLFDDPVLRAHKNGN 384
>gi|356566415|ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
max]
Length = 473
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/391 (80%), Positives = 349/391 (89%), Gaps = 12/391 (3%)
Query: 1 MRVIVQQS-EPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV ++ EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 93 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 147
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVF R++EILDPPVANVD LL+LFS++QPK EPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 148 ENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTEL 207
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 208 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINAL 267
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P S+AA+ +NWFEP+LGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 268 RSNP--SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 325
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML A+E KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 326 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCIVKGDWERYSY 385
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKREGDVR K+GDMGVQQAEPRLEPKKHRRQSRKRINQSI
Sbjct: 386 YFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSI 445
Query: 360 LDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
+ DDD+D+ +D ENDPI+RA+RNEN
Sbjct: 446 ----LDELDDDDDNLLDEENDPILRALRNEN 472
>gi|356540154|ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
max]
Length = 475
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/360 (83%), Positives = 325/360 (90%), Gaps = 8/360 (2%)
Query: 1 MRVIVQQS-EPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV ++ EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 97 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 151
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++EILDPPVANVD LL+LFS++ PK EPF LTRFLVEAESTGIPL LALNK EL
Sbjct: 152 ENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTEL 211
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 212 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINAL 271
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P SDAA+ DNWFEPILGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 272 RSNP--SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 329
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML ANE KCSFNNCLHLGEPGC+VKGDWERY Y
Sbjct: 330 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSY 389
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKREGDVR K+GDMGVQQAEPRLEPKKHRRQSRK INQSI
Sbjct: 390 YFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKSINQSI 449
>gi|357463041|ref|XP_003601802.1| hypothetical protein MTR_3g085550 [Medicago truncatula]
gi|355490850|gb|AES72053.1| hypothetical protein MTR_3g085550 [Medicago truncatula]
Length = 471
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/391 (77%), Positives = 341/391 (87%), Gaps = 7/391 (1%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD+E +++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINAL
Sbjct: 205 VDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINAL 264
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLAD
Sbjct: 265 RSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLAD 324
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQY 299
TPGFNQPSLLKVTKQSLAQTFPEI++ML NE KCSFNNCLHLGEPGC+VKGDWERY +
Sbjct: 325 TPGFNQPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSF 384
Query: 300 YFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
YFQLLDEIRIREEFQLRTFGTKRE DVR + G+MG QQAEPRL KKHRRQSRK+ NQSI
Sbjct: 385 YFQLLDEIRIREEFQLRTFGTKRESDVRLRTGNMGSQQAEPRLVLKKHRRQSRKKTNQSI 444
Query: 360 LDELDELDDDDNDDEIDLENDPIVRAIRNEN 390
D DD+D+ +D ENDP++ A+RNEN
Sbjct: 445 -----LDDLDDDDNLLDEENDPLLNALRNEN 470
>gi|42563017|ref|NP_176911.2| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis
thaliana]
gi|66792692|gb|AAY56448.1| At1g67440 [Arabidopsis thaliana]
gi|332196525|gb|AEE34646.1| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis
thaliana]
Length = 433
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/394 (74%), Positives = 334/394 (84%), Gaps = 9/394 (2%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEPRL PKKHRR+SRK+ Q
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQ 399
Query: 358 SILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
+++ ELDE +D+D+D + +ENDPIV+AI NEN+
Sbjct: 400 TMISELDEFEDEDSD--LYIENDPIVQAIENENK 431
>gi|225425472|ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3
[Vitis vinifera]
Length = 491
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 299/376 (79%), Positives = 334/376 (88%), Gaps = 5/376 (1%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 118 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 177
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 178 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 237
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 238 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 297
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 298 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 357
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 358 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 417
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEI 375
RT GTKREGDVRYK GDMGV+QAEPRLEPKKHRRQSRKR+NQSILDELD+LDDDD+ +
Sbjct: 418 RTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDA 477
Query: 376 DLENDPIVRAIRNENQ 391
E D I+ I NENQ
Sbjct: 478 --EGDSILNEIGNENQ 491
>gi|297841431|ref|XP_002888597.1| EMB1688 [Arabidopsis lyrata subsp. lyrata]
gi|297334438|gb|EFH64856.1| EMB1688 [Arabidopsis lyrata subsp. lyrata]
Length = 430
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/393 (75%), Positives = 336/393 (85%), Gaps = 8/393 (2%)
Query: 1 MRVIVQQSEPSRTS--DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIVQ S S D + KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRGM
Sbjct: 44 MRVIVQDVASSVKSGDDDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGM 103
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVF R +EILDPPVANVDHLL+LFS+DQPKLE F LTRFLVEAEST IPLTLALNK E
Sbjct: 104 IENVFHRRSEILDPPVANVDHLLVLFSLDQPKLELFTLTRFLVEAESTRIPLTLALNKTE 163
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
L+ EE L +WK RL W YEPLFCSV +K GLD++ LR+QT+VIVGPSGVGKSSLIN
Sbjct: 164 LISEEELESWKIRLRGWNYEPLFCSVGTKDGLDAIAFVLRNQTSVIVGPSGVGKSSLINI 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LRS+ H S A + +NWFEP+LG+KWF+DQRVGEVST+SGRGKHTTR+VSLLP+S GGYLA
Sbjct: 224 LRSN-HGSGAVEDENWFEPMLGNKWFDDQRVGEVSTRSGRGKHTTRNVSLLPISEGGYLA 282
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGFNQPSLLKVTKQSLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 DTPGFNQPSLLKVTKQSLAHCFPEIRNMI---EGEKCGFRDCLHIGEPGCVVKGDWERYP 339
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEPRL PKKHRR+SRK+ Q+
Sbjct: 340 YYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQT 399
Query: 359 ILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
++ ELDE +D+D+D +D+ENDPI+RAI NEN+
Sbjct: 400 MISELDEFEDEDSD--LDIENDPIIRAIENENK 430
>gi|297738426|emb|CBI27627.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 299/376 (79%), Positives = 334/376 (88%), Gaps = 5/376 (1%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 27 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 86
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 87 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 147 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 206
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 207 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 266
Query: 258 QTFPEIKEML--KANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
QTFPEI+++L ANEP KCSFN+CLHLGEPGCVVKGDWERY YYFQLLDEI+IREEFQL
Sbjct: 267 QTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQL 326
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEI 375
RT GTKREGDVRYK GDMGV+QAEPRLEPKKHRRQSRKR+NQSILDELD+LDDDD+ +
Sbjct: 327 RTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDA 386
Query: 376 DLENDPIVRAIRNENQ 391
E D I+ I NENQ
Sbjct: 387 --EGDSILNEIGNENQ 400
>gi|3176667|gb|AAC18791.1| Similar to hypothetical 41.9KD protein gb|1001369 from sequence of
Synechocystis sp. gb|D64006 [Arabidopsis thaliana]
Length = 450
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 295/411 (71%), Positives = 334/411 (81%), Gaps = 26/411 (6%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPI-----------------LGSKWFEDQRVGEVSTKSGRGK 220
LRS+ H + +NWFEP+ LG+KWF+DQRVGEVS++SGRGK
Sbjct: 224 VLRSN-HGGGVVEDENWFEPLKFCLPDSYELSFCDIQMLGNKWFDDQRVGEVSSRSGRGK 282
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTTR+VSLLP+S GGYLADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +C
Sbjct: 283 HTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDC 339
Query: 281 LHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEP 340
LH+GEPGCVVKGDWERY YY QLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+ AEP
Sbjct: 340 LHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEP 399
Query: 341 RLEPKKHRRQSRKRINQSILDELDELDDDDNDDEIDLENDPIVRAIRNENQ 391
RL PKKHRR+SRK+ Q+++ ELDE +D+D+D + +ENDPIV+AI NEN+
Sbjct: 400 RLMPKKHRRESRKKTKQTMISELDEFEDEDSD--LYIENDPIVQAIENENK 448
>gi|224086679|ref|XP_002307929.1| predicted protein [Populus trichocarpa]
gi|222853905|gb|EEE91452.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/355 (76%), Positives = 304/355 (85%), Gaps = 24/355 (6%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV +EP + D + K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 62 MRVIVT-AEPEKIEDSSSSSKVGTELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 120
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS++ILDPPVANVD LL+LFS++QP+LE F LTRFL+EAESTGIP+TLALNK E
Sbjct: 121 IENVFQRSSDILDPPVANVDRLLVLFSVEQPQLESFVLTRFLIEAESTGIPITLALNKAE 180
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD++VL+ W +RL +WGYEPLFCSV+SK+GLDSL LRDQTTVIVGPSGVGKSSLINA
Sbjct: 181 LVDQQVLSDWDTRLRSWGYEPLFCSVDSKMGLDSLASVLRDQTTVIVGPSGVGKSSLINA 240
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ QRVG+VST+SGRGKHTTR+VSLLPL GGGYLA
Sbjct: 241 LRNKPNS---------------------QRVGKVSTRSGRGKHTTRNVSLLPLGGGGYLA 279
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQ 298
DTPGF+QPSLLKVTKQSLAQ FPEI++ML NE AKC+FN+CLH+GEPGC+VKGDWERY
Sbjct: 280 DTPGFSQPSLLKVTKQSLAQYFPEIRKMLGDNEQAKCAFNDCLHVGEPGCIVKGDWERYP 339
Query: 299 YYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
YFQLLDEIRIREEFQLRTFGTKRE DVRYKVGDMGV+QAEPRLEPKKHRRQSRK
Sbjct: 340 LYFQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKQAEPRLEPKKHRRQSRK 394
>gi|357163023|ref|XP_003579600.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 2
[Brachypodium distachyon]
Length = 445
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/363 (67%), Positives = 296/363 (81%), Gaps = 7/363 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRG+IE
Sbjct: 62 MRVIVGSTPPG----LEHHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWADRRGVIE 117
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VFQR +E++DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP L NKVELV
Sbjct: 118 DVFQRRSEVVDPPVANVDRLVVLFSLDQPQPEPATLTRFLVEAESTGIPFVLVFNKVELV 177
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 178 DEQTKSYWRDRLKSWGYDPLFLSVDQRSGLAALEEMLEAQTTVVVGPSGVGKSSLINALR 237
Query: 181 SS---PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
+ P + +W+ P+ SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+L
Sbjct: 238 CNQNIPEEDPIHQLVDWYGPLGNSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFL 297
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSL+KVTK+ LA+TFPEI++ML+ NEP+KC+FN+C+HLGE GCVVKGDWERY
Sbjct: 298 ADTPGFNQPSLMKVTKKGLAETFPEIRKMLEENEPSKCTFNDCVHLGEHGCVVKGDWERY 357
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
YY QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK++NQ
Sbjct: 358 PYYLQLLDEIKIRESFQLRTFGTKREGDVRYKTGSMGVKQAEPRLQLKKHRRVSRKKMNQ 417
Query: 358 SIL 360
SIL
Sbjct: 418 SIL 420
>gi|357163020|ref|XP_003579599.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 1
[Brachypodium distachyon]
Length = 453
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/360 (67%), Positives = 293/360 (81%), Gaps = 6/360 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRG+IE
Sbjct: 75 MRVIVGSTPPG----LEHHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWADRRGVIE 130
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VFQR +E++DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP L NKVELV
Sbjct: 131 DVFQRRSEVVDPPVANVDRLVVLFSLDQPQPEPATLTRFLVEAESTGIPFVLVFNKVELV 190
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 191 DEQTKSYWRDRLKSWGYDPLFLSVDQRSGLAALEEMLEAQTTVVVGPSGVGKSSLINALR 250
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + + + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 251 CNQNIPEEDPIHQLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 308
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML+ NEP+KC+FN+C+HLGE GCVVKGDWERY YY
Sbjct: 309 PGFNQPSLMKVTKKGLAETFPEIRKMLEENEPSKCTFNDCVHLGEHGCVVKGDWERYPYY 368
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSIL 360
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK++NQSIL
Sbjct: 369 LQLLDEIKIRESFQLRTFGTKREGDVRYKTGSMGVKQAEPRLQLKKHRRVSRKKMNQSIL 428
>gi|326514214|dbj|BAJ92257.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 476
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/360 (66%), Positives = 294/360 (81%), Gaps = 6/360 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 98 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 153
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 154 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 213
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 214 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 273
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 274 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 331
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML+ NEP++C FN+C+HLGE GCVV+GDWERY YY
Sbjct: 332 PGFNQPSLMKVTKRGLAETFPEIRKMLEENEPSRCLFNDCVHLGEHGCVVEGDWERYPYY 391
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSIL 360
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK++NQSI
Sbjct: 392 QQLLDEIKIRESFQLRTFGTKREGDVRYKTGTMGVKQAEPRLQLKKHRRVSRKKMNQSIF 451
>gi|326509569|dbj|BAJ87000.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 449
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/360 (66%), Positives = 294/360 (81%), Gaps = 6/360 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 71 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 126
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 127 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 186
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 187 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 246
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 247 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 304
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML+ NEP++C FN+C+HLGE GCVV+GDWERY YY
Sbjct: 305 PGFNQPSLMKVTKRGLAETFPEIRKMLEENEPSRCLFNDCVHLGEHGCVVEGDWERYPYY 364
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSIL 360
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK++NQSI
Sbjct: 365 QQLLDEIKIRESFQLRTFGTKREGDVRYKTGTMGVKQAEPRLQLKKHRRVSRKKMNQSIF 424
>gi|326494450|dbj|BAJ90494.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326495076|dbj|BAJ85634.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 449
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/360 (66%), Positives = 294/360 (81%), Gaps = 6/360 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 71 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 126
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 127 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 186
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 187 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 246
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 247 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 304
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML+ NEP++C FN+C+HLGE GCVV+GDWERY YY
Sbjct: 305 PGFNQPSLMKVTKRGLAETFPEIRKMLEENEPSRCLFNDCVHLGEHGCVVEGDWERYPYY 364
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSIL 360
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK++NQSI
Sbjct: 365 QQLLDEIKIRESFQLRTFGTKREGDVRYKTGTMGVKQAEPRLQLKKHRRVSRKKMNQSIF 424
>gi|194707848|gb|ACF88008.1| unknown [Zea mays]
gi|413918101|gb|AFW58033.1| EMB1688 [Zea mays]
Length = 453
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/359 (67%), Positives = 290/359 (80%), Gaps = 6/359 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 76 MRVIVDATAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 131
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E++DPPVANVD L++LFS+DQPK EP LTRFLVEAES+GIP L NKVELV
Sbjct: 132 DVFERRSEVVDPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESSGIPFVLVFNKVELV 191
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 192 DEQTIAYWEDRLRSWGYDPLFLSVDKQSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 251
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++ GG+LADT
Sbjct: 252 CNQDISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIASGGFLADT 309
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+SLA+TFPEI++ LK NEP KC FN+C+HLGE GC VKGDWERY YY
Sbjct: 310 PGFNQPSLMKVTKKSLAETFPEIRKALKENEPKKCLFNDCVHLGEHGCAVKGDWERYPYY 369
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
Q+LDEI+IREE QLRTFGTKREGDVRYK G MGV+QAEPRLE KKHRR SRK+INQSI
Sbjct: 370 LQMLDEIKIREEIQLRTFGTKREGDVRYKTGVMGVKQAEPRLELKKHRRVSRKKINQSI 428
>gi|242075464|ref|XP_002447668.1| hypothetical protein SORBIDRAFT_06g012040 [Sorghum bicolor]
gi|241938851|gb|EES11996.1| hypothetical protein SORBIDRAFT_06g012040 [Sorghum bicolor]
Length = 453
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/358 (68%), Positives = 289/358 (80%), Gaps = 6/358 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 75 MRVIVDAAAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 130
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQPK EP LTRFLVEAESTGIP L NKVELV
Sbjct: 131 DVFERRSEVADPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESTGIPFVLVFNKVELV 190
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
E+ + W+ RL +WGY+PLF SV+ K G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 191 GEQTIAYWRDRLKSWGYDPLFLSVDKKSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 250
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 251 GNQDISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 308
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+SLA+TFPEI++ LK NEP KC FN+C+HLGE GCVVKG+WERY YY
Sbjct: 309 PGFNQPSLMKVTKKSLAETFPEIRKALKENEPTKCLFNDCVHLGEHGCVVKGEWERYPYY 368
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
Q+LDEI+IREE QLRTFGTKREGDVRYK G MG++QAEPRLE KKHRR SRK+INQS
Sbjct: 369 LQMLDEIKIREEIQLRTFGTKREGDVRYKTGVMGLKQAEPRLELKKHRRVSRKKINQS 426
>gi|226500088|ref|NP_001152253.1| EMB1688 [Zea mays]
gi|195654305|gb|ACG46620.1| EMB1688 [Zea mays]
Length = 453
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/359 (67%), Positives = 290/359 (80%), Gaps = 6/359 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 76 MRVIVDATAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 131
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E++DPPVANVD L++LFS+DQPK EP LTRFLVEAES+GIP L NKVELV
Sbjct: 132 DVFERRSEVVDPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESSGIPFVLVFNKVELV 191
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 192 DEQTIAYWEDRLRSWGYDPLFLSVDKQSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 251
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++ GG+LADT
Sbjct: 252 CNQDISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIASGGFLADT 309
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+SLA+TFPEI++ LK NEP KC FN+C+HLGE GC VKGDWERY YY
Sbjct: 310 PGFNQPSLMKVTKKSLAETFPEIRKALKENEPKKCLFNDCVHLGEHGCAVKGDWERYPYY 369
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
Q+LDEI+IREE QLRTFGTKREGDVRYK G +GV+QAEPRLE KKHRR SRK+INQSI
Sbjct: 370 LQMLDEIKIREEIQLRTFGTKREGDVRYKTGVIGVKQAEPRLELKKHRRVSRKKINQSI 428
>gi|297602588|ref|NP_001052604.2| Os04g0381600 [Oryza sativa Japonica Group]
gi|38346636|emb|CAD40742.2| OSJNBa0072D21.6 [Oryza sativa Japonica Group]
gi|255675392|dbj|BAF14518.2| Os04g0381600 [Oryza sativa Japonica Group]
Length = 366
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/358 (67%), Positives = 290/358 (81%), Gaps = 5/358 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V++G++DW RG+IE
Sbjct: 1 MRVIVGAA-PRGVEGA--RPGGDLLCVVRALLKKIRRRVLVGDRVLIGAVDWAGGRGVIE 57
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
VF+R E+ DPPVANVD L+LLF++DQP+ EP LTRFLV+AESTGIP L NKVELV
Sbjct: 58 GVFERRAEVADPPVANVDRLVLLFALDQPQPEPATLTRFLVDAESTGIPFVLVFNKVELV 117
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D++ ++ W+ R+ +WGY+PLF SV+ K GL +L + L QTTVIVGPSGVGKSSLINALR
Sbjct: 118 DDKTISYWRDRMKSWGYDPLFLSVDQKSGLSALEETLEGQTTVIVGPSGVGKSSLINALR 177
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
S+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 178 SNQNISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 235
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML NEP+KC FN+C+HLGE GCVVKGDWERY YY
Sbjct: 236 PGFNQPSLMKVTKKGLAETFPEIRKMLAENEPSKCLFNDCVHLGERGCVVKGDWERYPYY 295
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK+INQS
Sbjct: 296 LQLLDEIKIRESFQLRTFGTKREGDVRYKTGVMGVKQAEPRLQLKKHRRVSRKKINQS 353
>gi|116309286|emb|CAH66376.1| OSIGBa0092E09.3 [Oryza sativa Indica Group]
gi|125548024|gb|EAY93846.1| hypothetical protein OsI_15622 [Oryza sativa Indica Group]
Length = 377
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/358 (67%), Positives = 290/358 (81%), Gaps = 5/358 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V++G++DW RG+IE
Sbjct: 1 MRVIVGAA-PRGVEGA--RPGGDLLCVVRALLKKIRRRVLVGDRVLIGAVDWAGGRGVIE 57
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
VF+R E+ DPPVANVD L+LLF++DQP+ EP LTRFLV+AESTGIP L NKVELV
Sbjct: 58 GVFERRAEVADPPVANVDRLVLLFALDQPQPEPATLTRFLVDAESTGIPFVLVFNKVELV 117
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D++ ++ W+ R+ +WGY+PLF SV+ K GL +L + L QTTVIVGPSGVGKSSLINALR
Sbjct: 118 DDKTISYWRDRMKSWGYDPLFLSVDQKSGLSALEETLEGQTTVIVGPSGVGKSSLINALR 177
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
S+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 178 SNQNISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 235
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
PGFNQPSL+KVTK+ LA+TFPEI++ML NEP+KC FN+C+HLGE GCVVKGDWERY YY
Sbjct: 236 PGFNQPSLMKVTKKGLAETFPEIRKMLAENEPSKCLFNDCVHLGERGCVVKGDWERYPYY 295
Query: 301 FQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQS 358
QLLDEI+IRE FQLRTFGTKREGDVRYK G MGV+QAEPRL+ KKHRR SRK+INQS
Sbjct: 296 LQLLDEIKIRESFQLRTFGTKREGDVRYKTGVMGVKQAEPRLQLKKHRRVSRKKINQS 353
>gi|297841433|ref|XP_002888598.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334439|gb|EFH64857.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 466
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/379 (61%), Positives = 283/379 (74%), Gaps = 21/379 (5%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ S D +DK GVELLCVVR LLKKI R VLVGDKV+V +DW+DRR I
Sbjct: 93 MRVIVQDVPESDYGD-DDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWIDRRAKII 151
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +EIL+PPVANVDHLL+LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 152 NVFDRVSEILEPPVANVDHLLILFSLDQPKIDPFTLTRFLVEAESIGIRVTIALNKCELV 211
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+GLD + L++QT+VIVGPSGVGKSSLIN LR
Sbjct: 212 TQEEVESWKIRLRSWNYEPLFCSVGTKVGLDEIAFTLQNQTSVIVGPSGVGKSSLINILR 271
Query: 181 SSPHASDAADVDNWFEP----ILG-----------SKWFEDQRVGEVSTKSGRGKHTTRH 225
SS A + F+P ILG KWFEDQ VG+VS ++G GKHTTR+
Sbjct: 272 SS--YGGAIKHEEVFKPVSFFILGLMYDGQKKKNKKKWFEDQSVGQVSHRNGLGKHTTRN 329
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285
V+LLPL GGGYLADTPGFN+ LLKVTKQ L FPEI++M+ E KC F NC HLG
Sbjct: 330 VTLLPLCGGGYLADTPGFNKHKLLKVTKQKLPLCFPEIRKMV---EGGKCEFKNCSHLGV 386
Query: 286 PGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPK 345
GC V GDWERY YY QLL+EIRI EE QL+ +GTKREG V +G+ GV+QA+P+++PK
Sbjct: 387 YGCAVTGDWERYHYYLQLLEEIRIDEESQLKKYGTKREGGVSCHMGEKGVEQAKPQIDPK 446
Query: 346 KHRRQSRKRINQSILDELD 364
K+RR+SRK + Q+++ EL+
Sbjct: 447 KYRRESRKTMKQTMMKELE 465
>gi|12324680|gb|AAG52303.1|AC011020_10 hypothetical protein [Arabidopsis thaliana]
gi|3176670|gb|AAC18794.1| Contains similarity to 41.9 KD protein SLL0898 gb|1001369 from
sequence of Synechocystis sp. gb|D64006 [Arabidopsis
thaliana]
Length = 474
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/375 (60%), Positives = 275/375 (73%), Gaps = 26/375 (6%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ S + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDVPESDNGE-DDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SSPHASDAADVDNWFEPI--------------------LGSKWFEDQRVGEVSTKSGRGK 220
SS + D + F+P+ KWFEDQ VGEVS ++GRGK
Sbjct: 270 SS-YGGDIKH-EEVFKPVTKPFVFYHILMTMYKGQNKKNKKKWFEDQSVGEVSHRNGRGK 327
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTTR+V+LLPL GGGYLADTPGFN+ LLKVTKQ L FPEI++M+ E KC + +C
Sbjct: 328 HTTRNVTLLPLCGGGYLADTPGFNKHKLLKVTKQKLPLCFPEIRKMV---EGGKCKYKDC 384
Query: 281 LHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEP 340
HLG GC V G WERY Y+ QLLDEI+I EE QL+ +GTKREG V +G+ GV+QA+P
Sbjct: 385 SHLGVQGCAVTGGWERYDYFLQLLDEIKIDEECQLKKYGTKREGGVSCHMGEKGVEQAKP 444
Query: 341 RLEPKKHRRQSRKRI 355
R++PKK+RR+SRK +
Sbjct: 445 RIDPKKYRRESRKTM 459
>gi|217073450|gb|ACJ85084.1| unknown [Medicago truncatula]
Length = 262
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/266 (75%), Positives = 230/266 (86%), Gaps = 5/266 (1%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
+++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINALRS+P
Sbjct: 1 MDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPR 60
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLADTPGFN
Sbjct: 61 TCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFN 120
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLL 304
QPSLLKVTKQSLAQTFPEI++ML NE KCSFNNCLHLGEPGC+VKGDWERY +YFQLL
Sbjct: 121 QPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLL 180
Query: 305 DEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
DEIRIREEFQLRTFGTKRE DVR + G+MG QQAEPRL KKHRRQSRK+ NQSILD+LD
Sbjct: 181 DEIRIREEFQLRTFGTKRESDVRLRTGNMGFQQAEPRLVLKKHRRQSRKKTNQSILDDLD 240
Query: 365 ELDDDDNDDEIDLENDPIVRAIRNEN 390
+ D+ ++ ENDP++ A+RNEN
Sbjct: 241 DGDNLLDE-----ENDPLLNALRNEN 261
>gi|388519447|gb|AFK47785.1| unknown [Medicago truncatula]
Length = 262
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/266 (75%), Positives = 229/266 (86%), Gaps = 5/266 (1%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
+++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINALRS+P
Sbjct: 1 MDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPR 60
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSG GYLADTPGFN
Sbjct: 61 TCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGWGYLADTPGFN 120
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLL 304
QPSLLKVTKQSLAQTFPEI++ML NE KCSFNNCLHLGEPGC+VKGDWERY +YFQLL
Sbjct: 121 QPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLL 180
Query: 305 DEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
DEIRIREEFQLRTFGTKRE DVR + G+MG QQAEPRL KKHRRQSRK+ NQSILD+LD
Sbjct: 181 DEIRIREEFQLRTFGTKRESDVRLRTGNMGFQQAEPRLVLKKHRRQSRKKTNQSILDDLD 240
Query: 365 ELDDDDNDDEIDLENDPIVRAIRNEN 390
+ D+ ++ ENDP++ A+RNEN
Sbjct: 241 DGDNLLDE-----ENDPLLNALRNEN 261
>gi|168012358|ref|XP_001758869.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690006|gb|EDQ76375.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/376 (55%), Positives = 271/376 (72%), Gaps = 17/376 (4%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
+C K G ELLCVVRA+LKKIKRRVLVGDKV+V +IDW+DRRGM+E+V R +EI +PP+
Sbjct: 16 NCGAKAGTELLCVVRAVLKKIKRRVLVGDKVLVSAIDWMDRRGMVEDVLDRRSEIAEPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANV+HLL+LF+ D+PKLEP AL+RFLVEAESTGIP TL LNK +LV ++ L WK ++
Sbjct: 76 ANVEHLLVLFAFDRPKLEPIALSRFLVEAESTGIPFTLILNKADLVPQQELLDWKEKIAG 135
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY+P+ CSV S+ G+ +++ LR +T V+VGPSGVGKSSLINALR D + ++ W
Sbjct: 136 WGYKPVICSVRSRSGVAPVMEILRQKTAVVVGPSGVGKSSLINALR------DVSGIEMW 189
Query: 195 FEPILGSKW---------FEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-GGYLADTPGFN 244
E + FE +V EVS +SG+G+HTTRHVSLL L G GG LADTPGF+
Sbjct: 190 REKEAMQRLETVRDEHETFEKLQVSEVSLRSGKGRHTTRHVSLLRLPGDGGLLADTPGFS 249
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLL 304
QPSL VT L FPE++E + ++ C F NCLH GEP C V DW+RY +Y LL
Sbjct: 250 QPSLNLVTSGELGDLFPEVREKIASSPEGGCLFANCLHAGEPSCAVGKDWDRYSHYLGLL 309
Query: 305 DEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDEL- 363
+E+R REE + R GTKRE DVRYKVG GV+QAEPRL+ K+HRRQSRK + QS+ ++L
Sbjct: 310 EEVRKREEVEKRVLGTKRESDVRYKVGASGVKQAEPRLQTKRHRRQSRKTVRQSLDEKLW 369
Query: 364 DELDDDDNDDEIDLEN 379
+++++ +++ EN
Sbjct: 370 EKMEEQAEVEDVLREN 385
>gi|302821157|ref|XP_002992243.1| hypothetical protein SELMODRAFT_134979 [Selaginella moellendorffii]
gi|300140010|gb|EFJ06740.1| hypothetical protein SELMODRAFT_134979 [Selaginella moellendorffii]
Length = 379
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/365 (53%), Positives = 253/365 (69%), Gaps = 19/365 (5%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G++LLCVVRALLKKI+RRV+VGD V+V IDW D+RGMIE+V QR +E DPPVANVD
Sbjct: 21 RAGIKLLCVVRALLKKIRRRVMVGDSVLVSGIDWTDKRGMIEDVLQRRSETSDPPVANVD 80
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
LL+LFS+D+P+L+P L RFLVEAESTGIPL + LNK +LV +E+ ++W+ RL WGY+
Sbjct: 81 LLLVLFSLDRPRLDPVILNRFLVEAESTGIPLAVVLNKADLVTQEMKDSWEKRLTEWGYK 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL--RSSPHASDAADVDNWFE 196
P CSVE+ +GL + L D+T+V+ GPSGVGKSSLIN L RS D +D +
Sbjct: 141 PYICSVETGMGLHDMAPLLEDKTSVVFGPSGVGKSSLINFLRGRSCLPPDDIQALDEVDD 200
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-GGGYLADTPGFNQPSLLKVTKQS 255
++ RV EVS ++G G+HTTRHVSLL L G LADTPGF+ P+L VT S
Sbjct: 201 EVI--------RVNEVSYRTGSGRHTTRHVSLLHLPFRGAMLADTPGFSYPNLSMVTSNS 252
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
LA FPE++ L+ +E C F +C H+ EP CVV GDWERY YY L +E+ REE +
Sbjct: 253 LASLFPEVRARLEKSE-FSCGFADCQHISEPDCVVGGDWERYPYYVSLWNEVHKREEHEK 311
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-------LDELDELDD 368
FGTK+E D+R+KV + GV+QAEP LE KKHRR SR+++ Q + DE ELD+
Sbjct: 312 AVFGTKQENDMRFKVRESGVKQAEPMLELKKHRRTSRRQVRQMVDSDVREQRDEQRELDE 371
Query: 369 DDNDD 373
+N D
Sbjct: 372 LENAD 376
>gi|302800916|ref|XP_002982215.1| hypothetical protein SELMODRAFT_54463 [Selaginella moellendorffii]
gi|300150231|gb|EFJ16883.1| hypothetical protein SELMODRAFT_54463 [Selaginella moellendorffii]
Length = 384
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 250/357 (70%), Gaps = 12/357 (3%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G++LLCVVRALLKKI+RRV+VGD V+V IDW D+RGMIE+V QR +E DPPVANVD
Sbjct: 36 RAGIKLLCVVRALLKKIRRRVMVGDSVLVSGIDWTDKRGMIEDVLQRRSETSDPPVANVD 95
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
LL+LFS+D+P+L+P L RFLVEAESTGIPL + LNK +LV +E+ ++W+ RL WGY+
Sbjct: 96 LLLVLFSLDRPRLDPVILNRFLVEAESTGIPLAVVLNKADLVTQEMKDSWEKRLTEWGYK 155
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFE 196
P CSVE+ +GL + L D+T+V+ GPSGVGKSSLIN LR S D +D +
Sbjct: 156 PYICSVETGMGLHDMAPLLEDKTSVVFGPSGVGKSSLINFLRGKSCLPPDDIQALDEVDD 215
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-GGGYLADTPGFNQPSLLKVTKQS 255
++ RV EVS ++G G+HTTRHVSLL L G LADTPGF+ PSL VT S
Sbjct: 216 EVI--------RVNEVSYRTGSGRHTTRHVSLLHLPFRGAMLADTPGFSYPSLSMVTINS 267
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
LA FPE++ L+ +E C F +C H+ EP CVV GDWERY YY L +E+ REE +
Sbjct: 268 LASLFPEVRARLEKSE-FSCGFADCQHISEPDCVVGGDWERYPYYVSLWNEVHKREEHEK 326
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDND 372
FGTK+E D+R+KV + GV+QAEP LE K+HRR SR+++ Q + ++ E D+ +
Sbjct: 327 AVFGTKQENDMRFKVRESGVKQAEPMLELKRHRRTSRRQVRQMVDSDVREQRDEQRE 383
>gi|428778567|ref|YP_007170353.1| ribosome small subunit-dependent GTPase A [Dactylococcopsis salina
PCC 8305]
gi|428692846|gb|AFZ48996.1| ribosome small subunit-dependent GTPase A [Dactylococcopsis salina
PCC 8305]
Length = 352
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 214/356 (60%), Gaps = 28/356 (7%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D V LLC R+ L+KI ++V+VGD+V V DW D+RG+I VF R TE+ PPVAN
Sbjct: 24 DDRAVRLLCTRRSRLQKIGQKVMVGDRVRVVEPDWTDQRGVINEVFPRETELDRPPVANA 83
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+ L+L+F++ QP LEP L+RFLV+AESTGI L + LNK +LV W++RL WGY
Sbjct: 84 NQLVLVFALAQPPLEPMQLSRFLVKAESTGIDLCVCLNKKDLVSATERQEWEARLQGWGY 143
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
P SVE + GL++L ++L D+TT+ GPSGVGKSSLIN L P A
Sbjct: 144 SPFLISVEQQAGLEALQKQLNDRTTIFAGPSGVGKSSLINLL--IPQAQ----------- 190
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
RV VS K RG+HTTRHV L L GG LADTPGFNQP L +LA
Sbjct: 191 ---------LRVSTVSGKLQRGRHTTRHVELFSLPNGGLLADTPGFNQPD-LNCDPLTLA 240
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRT 317
FPE +E LK C F +CLH EP CVV+G+WERY +Y L E+ + R
Sbjct: 241 TYFPEARERLKQ---GSCRFGDCLHRDEPDCVVRGEWERYPHYLDFLKS--AIEQLEARE 295
Query: 318 FGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDD 373
T + ++ K+ G + EPRLE KK+RR SR++ NQ + + E+D++DN+D
Sbjct: 296 QTTDADNSLKLKIKSSGERSYEPRLERKKYRRDSRRQRNQDLQEWCKEMDEEDNND 351
>gi|428778282|ref|YP_007170069.1| ribosome small subunit-dependent GTPase A [Halothece sp. PCC 7418]
gi|428692561|gb|AFZ45855.1| ribosome small subunit-dependent GTPase A [Halothece sp. PCC 7418]
Length = 350
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 216/351 (61%), Gaps = 28/351 (7%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D LLC R+ LKKI ++V+VGD+ VV DW D+RG+I VF R TE+ PPVAN
Sbjct: 24 DTDETRLLCTRRSRLKKIGQKVMVGDRAVVAEPDWSDQRGVITEVFPRETELDRPPVANA 83
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+ ++L+F++ QP L+P L+RFLV+AESTGI L L LNK +LV E W++RL WGY
Sbjct: 84 NQVVLVFALAQPPLDPLQLSRFLVKAESTGIDLCLCLNKQDLVSAEQRQHWETRLQDWGY 143
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
P F SVE++ GLD+L Q+LR++ T++ GPSGVGKSSLIN L P A
Sbjct: 144 APFFISVETEDGLDALQQQLRNKITILAGPSGVGKSSLINLL--IPQAQ----------- 190
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
RVG VS K RG+HTTRHV L L GG LADTPGFNQP L LA
Sbjct: 191 ---------LRVGAVSGKLQRGRHTTRHVELFQLPEGGLLADTPGFNQPD-LTCAPLELA 240
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRT 317
FPE + L + C F++CLH EP CVV+GDWERY++Y + L+ + E + +T
Sbjct: 241 YYFPEARARLAED---SCQFSDCLHRDEPNCVVRGDWERYEHYLEFLESAIAQWEEREQT 297
Query: 318 FGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
+ E ++ K+ G + EPRLE KK+RR SR++ NQ + + +L+D
Sbjct: 298 --SDEEDSLKLKMKGSGERHYEPRLERKKYRRHSRRQQNQDLQEWCKDLED 346
>gi|434396732|ref|YP_007130736.1| ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437]
gi|428267829|gb|AFZ33770.1| ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437]
Length = 368
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 213/357 (59%), Gaps = 37/357 (10%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC R LKKI ++V+VGD VVV DW+DRRG I V R TE+ PPVANVD +L
Sbjct: 39 LALLCTRRTRLKKIGQKVMVGDLVVVEEPDWLDRRGAIAEVLPRKTELQRPPVANVDQIL 98
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+F++++P L+P+ L+RFLV+AESTG+ L L LNK +L+ + W+ L WGY PLF
Sbjct: 99 LVFALEEPGLDPWQLSRFLVKAESTGLDLCLCLNKSDLISHQEQQKWQIGLQKWGYAPLF 158
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
SV + G++ L L+++ TV+ GPSGVGKSSLIN L S
Sbjct: 159 ISVVKQQGIELLYHHLQNKITVVAGPSGVGKSSLINYLIPSI------------------ 200
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
D RVGEVS K RG+HTTRHV L L GGG LAD+PGFNQPSL L FP
Sbjct: 201 ----DLRVGEVSGKLQRGRHTTRHVELFELPGGGLLADSPGFNQPSL-NCQPSDLISYFP 255
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTK 321
E + L C F+NCLH EP C V+GDWERY+YY + L+E + Q +T
Sbjct: 256 EARVRLAQQ---SCQFSNCLHRDEPNCAVRGDWERYEYYLKFLEEAIAHQAEQQKT--PD 310
Query: 322 REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRI---------NQSILDELDELDDD 369
E ++ K+ G +Q EP+LE KK+RR SRK+ NQS+ D E++D+
Sbjct: 311 EESSLKLKMKRDGKRQYEPKLETKKYRRSSRKQKHQNLQELYENQSLKDIYQEVEDE 367
>gi|428210666|ref|YP_007083810.1| ribosome small subunit-dependent GTPase A [Oscillatoria acuminata
PCC 6304]
gi|427999047|gb|AFY79890.1| ribosome small subunit-dependent GTPase A [Oscillatoria acuminata
PCC 6304]
Length = 409
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 220/354 (62%), Gaps = 28/354 (7%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
T LLC R+ LKKI ++V+VGD+VV+ DW RG + VF R TE+ P +AN +
Sbjct: 83 TASTLLCTRRSRLKKIGQQVMVGDRVVIEEPDWEGGRGAVAEVFPRQTELDRPAIANANQ 142
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+LL+F++++P L+P LTRFLV+AES G+ + L LNK++LV E+ W+ RL WGY+P
Sbjct: 143 VLLVFAIEEPTLDPHQLTRFLVKAESAGLSVLLCLNKIDLVPEQERIEWQERLENWGYQP 202
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
LF SVE+ +G+D++ RL+D+ T+I GPSGVGKSSLIN L
Sbjct: 203 LFISVETGVGIDAVRDRLKDKITLISGPSGVGKSSLINQLIP------------------ 244
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
F RVG+VS K GRG+HTTRHV L L GG LAD+PGFNQP+ L + LA+
Sbjct: 245 ----FATLRVGDVSGKLGRGRHTTRHVELFDLPSGGLLADSPGFNQPN-LDFPPRELAEY 299
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFG 319
FPE ++ L+ C F++CLH EP CVV GDWERY Y + L+E I EE + +
Sbjct: 300 FPEARQRLQE---GTCQFSDCLHRDEPNCVVSGDWERYDDYLEFLEEAIIYEE--ILSQQ 354
Query: 320 TKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDD 373
+ E ++ K G +Q EP+LE KK+RR SR+ +Q++ + ++++N +
Sbjct: 355 SNPESSMKVKSKGKGTEQNEPKLESKKYRRVSRRFQHQNLEQLYQDFEEEENQE 408
>gi|218247953|ref|YP_002373324.1| ribosome-associated GTPase [Cyanothece sp. PCC 8801]
gi|218168431|gb|ACK67168.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 8801]
Length = 376
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/356 (45%), Positives = 219/356 (61%), Gaps = 32/356 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ D+ D RG I VF R TE+ PPVAN + +LL+
Sbjct: 49 LLCTRRTRLKKIGQKVMVGDRVIIEEPDYQDGRGAIAQVFPRKTELSRPPVANAEQILLV 108
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P L+P+ L+RFLV+AEST + L L NK++L+ + W+ RL WGY+PLF S
Sbjct: 109 FALENPPLDPWQLSRFLVKAESTSLSLCLCFNKLDLITDTQRQQWQERLEKWGYKPLFIS 168
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL++L LR + T++ GPSGVGKSSLIN L P
Sbjct: 169 IMTDQGLEALTDCLRGKITILAGPSGVGKSSLINTL--IPEV------------------ 208
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRVG+VS K +G+HTTRHV L L GGG LADTPGFNQP L Q LA FPE
Sbjct: 209 --EQRVGKVSGKLNKGRHTTRHVELFELPGGGLLADTPGFNQPD-LDCDPQELALYFPEA 265
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
K L C FN+CLH GEP CV+ DWERY++Y L+E R+E L+ G + E
Sbjct: 266 KAQLNQ---GNCQFNDCLHRGEPNCVINNDWERYEHYLMFLEEAINRQE-TLQKMGDE-E 320
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI--LDELDELDD--DDNDDEI 375
+++ K+ G + EP+LE KK+RR+SR+ +Q++ L + LDD DND E+
Sbjct: 321 TNLKLKIKASGQEYYEPKLETKKYRRRSRREKHQTLQGLYDHQSLDDFEHDNDQEL 376
>gi|158333624|ref|YP_001514796.1| ribosome-associated GTPase [Acaryochloris marina MBIC11017]
gi|158303865|gb|ABW25482.1| ribosome small subunit-dependent GTPase A [Acaryochloris marina
MBIC11017]
Length = 361
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/346 (43%), Positives = 213/346 (61%), Gaps = 28/346 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK++++V+VGD+VVV DW+ +RG I ++ R +++ PP+ANV+ +LL
Sbjct: 39 QLLCTRRSRLKKLRQQVMVGDQVVVEEPDWLGQRGAIASILPRQSQLARPPIANVNQILL 98
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +PKL+P LTRFLV AE T +P+ L NK +L W+ R+ WGY+P+
Sbjct: 99 MFALAEPKLDPQQLTRFLVTAEQTHLPIILCFNKRDLTTYATQKAWRDRMKRWGYDPILI 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+++ +GL +L + LR+ TV G SGVGKSSLIN F P +
Sbjct: 159 SLQTGVGLKALERPLREHITVASGLSGVGKSSLINH----------------FIPDI--- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D RVG VS + G+G+HTTRHV L LS GG+LADTPGFNQPSL + L Q FPE
Sbjct: 200 ---DLRVGRVSERWGQGRHTTRHVELFELSKGGFLADTPGFNQPSLSNILPAQLGQCFPE 256
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L A+C F +C H+ EP C V+GDWERY YY LL E + EE R
Sbjct: 257 IRQRLSQ---ARCQFKDCQHMDEPNCAVRGDWERYPYYLNLLAE--VTEEHAKRQMTATT 311
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD-ELDELD 367
E + K G G + EP+LE K++RR SR+++ Q + + +LD L+
Sbjct: 312 EARTKRKSGKRGKIKNEPKLETKRYRRPSRRQLQQDLQNIDLDHLE 357
>gi|257060725|ref|YP_003138613.1| ribosome-associated GTPase [Cyanothece sp. PCC 8802]
gi|256590891|gb|ACV01778.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 8802]
Length = 405
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 159/356 (44%), Positives = 221/356 (62%), Gaps = 30/356 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ D+ D RG I VF R TE+ PPVAN + +LL+
Sbjct: 78 LLCTRRTRLKKIGQKVMVGDRVIIEEPDYQDGRGAIAQVFPRKTELSRPPVANAEQILLV 137
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P L+P+ L+RFLV+AEST + L L NK++L+ + W+ RL WGY+PLF S
Sbjct: 138 FALENPPLDPWQLSRFLVKAESTSLSLCLCFNKLDLITDTQRQQWQERLEKWGYKPLFIS 197
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL++L LR + T++ GPSGVGKSSLIN L P
Sbjct: 198 IMTDQGLEALTDCLRGKITILAGPSGVGKSSLINTL--IPEV------------------ 237
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRVG+VS K +G+HTTRHV L L GGG LADTPGFNQP L Q LA FPE
Sbjct: 238 --EQRVGKVSGKLNKGRHTTRHVELFELPGGGLLADTPGFNQPD-LDCDPQELALYFPEA 294
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
K L C FN+CLH GEP CV+ DWERY++Y L+E R+E L+ G + E
Sbjct: 295 KAQLNQ---GNCQFNDCLHRGEPNCVINNDWERYEHYLMFLEEAINRQE-TLQKMGDE-E 349
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI--LDELDELDDDDNDDEIDL 377
+++ K+ G + EP+LE KK+RR+SR+ +Q++ L + LDD ++D++ +L
Sbjct: 350 TNLKLKIKASGQEYYEPKLETKKYRRRSRREKHQTLQGLYDHQSLDDFEHDNDQEL 405
>gi|359459825|ref|ZP_09248388.1| GTPase RsgA [Acaryochloris sp. CCMEE 5410]
Length = 361
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 213/350 (60%), Gaps = 28/350 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK+ ++V+VGD+VVV DW+ +RG I ++ R +++ PP+ANV+ +LL
Sbjct: 39 QLLCTRRSRLKKLGQQVMVGDQVVVEEPDWLGQRGAIASILPRQSQLARPPIANVNQILL 98
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +PKL+P LTRFLV AE T +P+ L NK +L W+ R+ WGY+P+
Sbjct: 99 MFALAEPKLDPQQLTRFLVTAEQTHLPIILCFNKRDLTSYATQKAWRDRMKRWGYDPILI 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+++ +GL +L + LR+ TV G SGVGKSSLIN F P +
Sbjct: 159 SLQTGVGLKALERPLREHITVASGLSGVGKSSLINH----------------FIPNI--- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D RVG VS + G+G+HTTRHV L LS GG+LADTPGFNQPSL + L Q FPE
Sbjct: 200 ---DLRVGRVSERWGQGRHTTRHVELFELSKGGFLADTPGFNQPSLGNILPAQLGQCFPE 256
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L A+C F +C H+ EP C V+GDWERY YY LL E + EE R
Sbjct: 257 IRQRLSQ---ARCQFKDCQHMDEPNCAVRGDWERYPYYLNLLAE--VTEEHAKRQMTATT 311
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD-ELDELDDDDN 371
E + K G G + EP+LE K++RR SR+++ Q + + +LD L+ +
Sbjct: 312 ETRTKRKSGKRGKIKNEPKLETKRYRRPSRRQLQQDLQNIDLDHLEHSSS 361
>gi|428223838|ref|YP_007107935.1| ribosome small subunit-dependent GTPase A [Geitlerinema sp. PCC
7407]
gi|427983739|gb|AFY64883.1| ribosome small subunit-dependent GTPase A [Geitlerinema sp. PCC
7407]
Length = 368
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 214/356 (60%), Gaps = 42/356 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK +RV+VGD+V+V DW RG I V R TE+ PPVAN D +LL
Sbjct: 42 DLLCTRRSRLKKTGQRVMVGDRVLVEEPDWAGGRGAIAEVLPRQTELNRPPVANADQILL 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ P +EP L+RFLV+AESTG+ + + NK +LV E W +RL WGYEP+
Sbjct: 102 VFALSAPPVEPLQLSRFLVKAESTGMRVQMCFNKRDLVSAEEQCQWHARLTDWGYEPIMI 161
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV GL +L++L QTT+I GPSGVGKSSLIN L P L
Sbjct: 162 SVAQGAGLQDILRQLEGQTTIISGPSGVGKSSLINLLI----------------PEL--- 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K RG+HTTRHV L L GGG LADTPGFNQP L T ++L Q FPE
Sbjct: 203 ---ELRVGDVSGKLQRGRHTTRHVELFHLPGGGLLADTPGFNQPE-LDCTPEALTQCFPE 258
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L + +C F++CLH EP C V+GDWERY YY QLLDE R++ RT
Sbjct: 259 IRDRLHRD---RCQFSDCLHRDEPNCAVRGDWERYPYYLQLLDEAIARQDALNRT----S 311
Query: 323 EGDVRYKVG--DMGVQQAEPRLEPKKHRR----------QSRKRINQSILDELDEL 366
EG+ +KV + G Q EP+LEPKK+R+ Q + N +LDE +E+
Sbjct: 312 EGEATFKVKSREEGQIQYEPKLEPKKYRQSSRRSRQQALQEWAKGNADLLDEDEEI 367
>gi|172036212|ref|YP_001802713.1| ribosome-associated GTPase [Cyanothece sp. ATCC 51142]
gi|171697666|gb|ACB50647.1| hypothetical protein cce_1297 [Cyanothece sp. ATCC 51142]
Length = 377
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 204/347 (58%), Gaps = 28/347 (8%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD++++ D+ D RG I V R TE+ PPV
Sbjct: 40 DHNNAPIYHLLCTRRTRLKKIGQMVMVGDRIIIEEPDYQDARGAIAQVLPRKTELSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTDIPCLLCLNKADLLTSTQQKTWQERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PLF SV + GL L RL+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 160 WGYNPLFISVMTSQGLTDLKDRLKDKITILAGPSGVGKSSLINTL--------IPDV--- 208
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 209 -----------KQRVNSVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 256
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
L FPE K+ LK C F++C H GEP CV+ +WERY++Y L+E ++E
Sbjct: 257 QLIHYFPEAKQQLKQ---GNCQFSDCFHRGEPNCVIDNNWERYEHYLTFLEEAITQKEAT 313
Query: 315 LRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
+ +E V+ KV G + EP+LE KK+RR SR++ +Q + D
Sbjct: 314 QQM--ADQESTVKLKVKASGEEYYEPKLETKKYRRTSRRQKHQDLQD 358
>gi|354553008|ref|ZP_08972315.1| ribosome biogenesis GTPase RsgA [Cyanothece sp. ATCC 51472]
gi|353554838|gb|EHC24227.1| ribosome biogenesis GTPase RsgA [Cyanothece sp. ATCC 51472]
Length = 359
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 204/347 (58%), Gaps = 28/347 (8%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD++++ D+ D RG I V R TE+ PPV
Sbjct: 22 DHNNAPIYHLLCTRRTRLKKIGQMVMVGDRIIIEEPDYQDARGAIAQVLPRKTELSRPPV 81
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 82 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTDIPCLLCLNKADLLTSTQQKTWQERLEK 141
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PLF SV + GL L RL+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 142 WGYNPLFISVMTSQGLTDLKDRLKDKITILAGPSGVGKSSLINTL--------IPDV--- 190
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 191 -----------KQRVNSVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 238
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
L FPE K+ LK C F++C H GEP CV+ +WERY++Y L+E ++E
Sbjct: 239 QLIHYFPEAKQQLKQ---GNCQFSDCFHRGEPNCVIDNNWERYEHYLTFLEEAITQKEAT 295
Query: 315 LRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
+ +E V+ KV G + EP+LE KK+RR SR++ +Q + D
Sbjct: 296 QQM--ADQESTVKLKVKASGEEYYEPKLETKKYRRTSRRQKHQDLQD 340
>gi|428309201|ref|YP_007120178.1| ribosome small subunit-dependent GTPase A [Microcoleus sp. PCC
7113]
gi|428250813|gb|AFZ16772.1| ribosome small subunit-dependent GTPase A [Microcoleus sp. PCC
7113]
Length = 383
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/350 (46%), Positives = 207/350 (59%), Gaps = 28/350 (8%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS S + V LLC R LKK+ +RV+VGD+VVV DW RG I V R T++
Sbjct: 52 PSEHSQPSIIQSVTLLCTRRTRLKKMGQRVMVGDRVVVEEPDWEGERGAIAEVLPRKTQL 111
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
PPVAN D +LL+F++ P L+P+ LTRFLV+AESTG+ + L LNK +LV +E L W
Sbjct: 112 DRPPVANADEILLVFALADPPLDPYQLTRFLVKAESTGLGICLCLNKKDLVSDEQLQEWT 171
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
SRL WGYEP+ SV + GL+ L Q+L + T++ GPSGVGKSSLIN L
Sbjct: 172 SRLRNWGYEPVLISVHTHEGLEKLSQQLNHKITILAGPSGVGKSSLINEL--------IP 223
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
DV+ RV VS K RG+HTTRHV L L GG LADTPGFNQP +
Sbjct: 224 DVNV--------------RVAAVSGKLSRGRHTTRHVELFDLPAGGLLADTPGFNQPD-I 268
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRI 309
+ LAQ FPE + L + +C F++CLH EP C V+GDWERY+YY LL E I
Sbjct: 269 DCPPEELAQYFPEARHRLATH---RCQFSDCLHRDEPNCAVRGDWERYEYYLDLL-ENAI 324
Query: 310 REEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
+ +L E ++ K G Q EP+LE KK+RR SR+ +Q++
Sbjct: 325 AWQDRLHQQADP-ESTMKAKTKGKGQTQYEPKLESKKYRRHSRRSQHQAL 373
>gi|145351413|ref|XP_001420074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580307|gb|ABO98367.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 352
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 194/295 (65%), Gaps = 23/295 (7%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D+T ELLCV RALLKKIK+RVLVGD+VV+ +DWV RGMI++V R +E+++PP+AN
Sbjct: 5 EDRT-TELLCVARALLKKIKKRVLVGDEVVLSGVDWVQSRGMIDDVVGRRSELVEPPIAN 63
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD LL+F+++QP LE LTRFLV E+T +P TL LNK EL+ E + W++RL +WG
Sbjct: 64 VDQALLVFALEQPPLEVKQLTRFLVSMEATKVPFTLVLNKCELLSEVEVADWRARLESWG 123
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ SV + G++ L + LR +TTV+ GPSGVGKSSLIN R
Sbjct: 124 YDAKVISVATGQGVEELEEALRGKTTVLAGPSGVGKSSLINRFR---------------- 167
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
GS + Q V V T+SGRGKHTTRHVSLL L GG+LADTPGF PSL L
Sbjct: 168 --FGSALADLQSVKGVGTRSGRGKHTTRHVSLLRLDVGGFLADTPGFGYPSLEGFDTDKL 225
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD-WE--RYQYYFQLLDEIR 308
A FPEI++ L A+ A+C F++C H EPGCVV + WE RY Y+ L +E++
Sbjct: 226 AMCFPEIRDAL-ASSDARCQFSDCTHRHEPGCVVVDECWEERRYDLYYDLFEEVK 279
>gi|170077314|ref|YP_001733952.1| ribosome-associated GTPase [Synechococcus sp. PCC 7002]
gi|169884983|gb|ACA98696.1| probable ribosome-associated GTPase A [Synechococcus sp. PCC 7002]
Length = 365
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 212/354 (59%), Gaps = 35/354 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI +RV+VGD+V+V +D+ DRRG I V R T + PPVAN D LLL+
Sbjct: 40 LLCTRRARLKKIGQRVMVGDQVIVEEVDFQDRRGAIAQVLSRRTVLDRPPVANADQLLLV 99
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P+ L+RFL++AESTG+PL L LNK +L+ ++ +TW RL WGY +F S
Sbjct: 100 FALAEPSLDPWQLSRFLIKAESTGLPLLLGLNKQDLLSKKEQHTWAERLQEWGYRAVFFS 159
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V G+ +L L+D+ TV+ GPSGVGKSSLIN R P
Sbjct: 160 VLQDAGIAALEASLKDKITVVAGPSGVGKSSLIN--RLIPQV------------------ 199
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEVS K RG+HTTRHV L PL GG LAD+PGFNQP V Q L FPEI
Sbjct: 200 --ELRVGEVSGKLQRGRHTTRHVELFPLPQGGLLADSPGFNQPD-WSVLPQDLGGYFPEI 256
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEFQLRTFGTKR 322
+ LK C F +CLHL EP C V DWERY+ Y + L+E I RE Q +
Sbjct: 257 RAQLKQE---NCQFKDCLHLQEPNCAVGRDWERYEIYEKFLEEAIAYRETQQQQ---RDE 310
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD-----ELDELDDDDN 371
E ++ K+ G Q EP+L KK+RR SR+ +Q++ D LDEL +D+
Sbjct: 311 EEHLKIKITAAGKQIHEPKLATKKYRRTSRRERHQNLKDLYEKQSLDELYGNDD 364
>gi|126656133|ref|ZP_01727517.1| ribosome-associated GTPase [Cyanothece sp. CCY0110]
gi|126622413|gb|EAZ93119.1| ribosome-associated GTPase [Cyanothece sp. CCY0110]
Length = 377
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 206/347 (59%), Gaps = 28/347 (8%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD+VVV D+ D RG I V R TE+ PPV
Sbjct: 40 DHNNTLIHHLLCTRRTRLKKIGQTVMVGDRVVVEEPDYQDARGAIAQVLPRKTELSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTEIPFLLCLNKADLLTSTQQKTWQERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY+PL SV + GL L L+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 160 WGYQPLLISVMTSQGLTELKDCLKDKITILAGPSGVGKSSLINTL--------VPDV--- 208
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV +VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 209 -----------KQRVNQVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 256
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
L FPE ++ L E C F++C H GEP C+V +WERY++Y L+E ++E
Sbjct: 257 ELIHYFPEARQQL---EQGNCQFSDCFHRGEPNCIVDENWERYEHYLTFLEEAIAQKEAT 313
Query: 315 LRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
+ T +E V+ KV G + EP+LE KK+RR SR++ +Q++ D
Sbjct: 314 QQM--TDQESTVKLKVKASGQEYYEPKLESKKYRRTSRRQKHQNLQD 358
>gi|218437560|ref|YP_002375889.1| ribosome-associated GTPase [Cyanothece sp. PCC 7424]
gi|218170288|gb|ACK69021.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7424]
Length = 380
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 151/336 (44%), Positives = 213/336 (63%), Gaps = 28/336 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI + V+VGD+V++ +D+ D+RG I V R TE+ PPVAN D ++L+
Sbjct: 52 LLCTRRTRLKKIGQTVMVGDRVLIEEVDFTDKRGAIAQVLPRKTELQRPPVANADQIVLV 111
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P+ L+RFLV+AEST + L L LNK +L+ ++ W+ L WGY+P+ S
Sbjct: 112 FALEEPSLDPWQLSRFLVKAESTSLELCLCLNKADLISQQQQQQWQEVLQQWGYDPVLIS 171
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + GL LL+RL+D+ +++ GPSGVGKSSLIN L +
Sbjct: 172 VVKQDGLKPLLERLKDKISILAGPSGVGKSSLINRLIPAV-------------------- 211
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRV +VS K RG+HTTRHV L L GGG LADTPGFNQP L LA FPE
Sbjct: 212 --EQRVNQVSGKLQRGRHTTRHVELFELPGGGLLADTPGFNQPE-LDSEPTELAFYFPEA 268
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L E +C FN+CLH EP CVV+G+WERY+YY + L+E ++E + E
Sbjct: 269 RQRL---EHQQCQFNDCLHRDEPNCVVRGNWERYEYYLKFLEEAIAKQEALQQM--PDEE 323
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
+++ K+ D G +Q EP+LE KK+RR SR++ +QS+
Sbjct: 324 SNLKLKIKDSGQEQYEPKLESKKYRRDSRRKKHQSL 359
>gi|384247577|gb|EIE21063.1| GTPase EngC, partial [Coccomyxa subellipsoidea C-169]
Length = 340
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 220/345 (63%), Gaps = 18/345 (5%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC VR +LKKIK+ VLVGD+V V IDW DRRG ++ V R +E+ DP VANVD +LL
Sbjct: 2 ELLCTVRGILKKIKQSVLVGDRVRVAGIDWDDRRGTVDEVLPRRSELQDPAVANVDQVLL 61
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++++P L+ TRFLV E+ +P T+ LNK +LV E + + + +WGY+ +
Sbjct: 62 VFALERPPLDLRTATRFLVSTEAADLPATVVLNKADLVPSEECSQALAEIESWGYDAIAV 121
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR---------SSPHASDAADVDN 193
S + GLD L + L+ + +V+ GPSGVGKSSLINA++ S+ +S +DN
Sbjct: 122 SAATGRGLDRLSEVLKGRVSVVAGPSGVGKSSLINAIKLEADAASSSSAMASSGTPTLDN 181
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
W + Q VG++ T GRGKHTTRHVSLL ++ GG LAD+PGFNQPSL +
Sbjct: 182 WRGMQAAVERLGLQPVGDL-TNLGRGKHTTRHVSLLEVA-GGLLADSPGFNQPSLDDLNV 239
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEF 313
SL+ FPE++E ++ C+F NC HL EPGC V+ DW R++ Y +L +E++ E+
Sbjct: 240 ASLSDCFPEVRERAES-----CAFKNCQHLIEPGCAVREDWSRHELYVELHEEVKAAEDL 294
Query: 314 -QLRTFGTK-REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRIN 356
++R+ K REG VRYK GV+ E L+ K HRR SR++++
Sbjct: 295 ARVRSASKKRREGSVRYKSAAGGVRTREALLDIKSHRRVSRRQVS 339
>gi|427418425|ref|ZP_18908608.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
7375]
gi|425761138|gb|EKV01991.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
7375]
Length = 371
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/339 (45%), Positives = 210/339 (61%), Gaps = 31/339 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LC RA LKK+ ++V+VGD+V+V +DW D+RG I + R+ + PP++NVD +LL+
Sbjct: 39 FLCTRRARLKKLGQQVVVGDRVLVEEMDWQDKRGAIATIQTRTNLLDRPPISNVDQILLV 98
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P L+RFLV+AESTGIP+TL LNK +L+ +E ++ W++RL WGYEPL S
Sbjct: 99 FALAEPALDPAQLSRFLVKAESTGIPVTLCLNKRDLLSQESIDHWQTRLSDWGYEPLLVS 158
Query: 144 VESKLGLD-SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
V L +L++ L+ + +V+ GPSGVGKSSL+N L DVD
Sbjct: 159 VREDKALPVALIETLKHRVSVVAGPSGVGKSSLLNRL--------VPDVD---------- 200
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS K GRG+HTTRHV L L GG LADTPGFNQP L ++L FPE
Sbjct: 201 ----ARTNAVSGKLGRGRHTTRHVELFDLPTGGLLADTPGFNQPDL-TCPVETLMACFPE 255
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ C FN+CLH EPGC V+G+WERY YY LL+E+ + + QL
Sbjct: 256 IRQ-----RAGHCQFNDCLHRDEPGCSVRGEWERYDYYLSLLNEV-LHHQQQLDDRPAA- 308
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
E + K+G G Q EP+LE KK+RR SR+R +Q + D
Sbjct: 309 EVTEKVKMGSDGQVQHEPKLEAKKYRRTSRRRHHQDLQD 347
>gi|113475425|ref|YP_721486.1| ribosome-associated GTPase [Trichodesmium erythraeum IMS101]
gi|110166473|gb|ABG51013.1| ribosome small subunit-dependent GTPase A [Trichodesmium erythraeum
IMS101]
Length = 374
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 214/352 (60%), Gaps = 35/352 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+V++ DWV RG I V R TE+ PP+ANV+ ++L+
Sbjct: 49 LLCTRRSRLKKIGQKVMVGDRVIIEDPDWVGGRGAIAEVLPRETELDRPPIANVNQVMLV 108
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P ALTRFL++AESTG+ + L L+K +LV + W+S++ WGYEP F S
Sbjct: 109 FALAEPNLDPVALTRFLLKAESTGLEICLCLSKCDLVSATKMEEWRSQISEWGYEPFFIS 168
Query: 144 VESKLGL-------DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
+++ +GL +SL ++LR++ TV+ GPSGVGKSSLIN L DV
Sbjct: 169 LKTDVGLGVVKDGSNSLWEKLRNKITVVSGPSGVGKSSLINYL--------IPDV----- 215
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ RV VS K RG+HTTRHV L L GG LADTPGFNQP L+ L
Sbjct: 216 ---------NLRVSAVSGKLSRGRHTTRHVELFELPNGGLLADTPGFNQPQ-LECEAIEL 265
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLR 316
A FPE ++ L C F++CLH EP CVV+G+W RY+YY L+E R+E +
Sbjct: 266 AHLFPEARKYLA---DGSCQFSDCLHRDEPNCVVRGEWNRYEYYLMFLEEAIARQEALQQ 322
Query: 317 TFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E +++ K+ G Q+ EP+L KK+RR SRK +Q + D +EL D
Sbjct: 323 KPCV--ESNLKAKISSGGKQKLEPKLASKKYRRSSRKLEHQQLQDLCEELVD 372
>gi|428307329|ref|YP_007144154.1| ribosome biogenesis GTPase RsgA [Crinalium epipsammum PCC 9333]
gi|428248864|gb|AFZ14644.1| ribosome biogenesis GTPase RsgA [Crinalium epipsammum PCC 9333]
Length = 368
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 205/351 (58%), Gaps = 29/351 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N G LLC RA LKKI ++V+VGD+V + DW RG I V R T++ PP+AN
Sbjct: 46 NSAFGYFLLCTRRARLKKIGQQVIVGDRVEIEEPDWAGGRGAIAQVLPRQTQLDRPPIAN 105
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
D +LL+F++ P +EP+ L+RFLV+AE TGI + L LNK +LV + W+ RLH WG
Sbjct: 106 TDQILLVFALADPPIEPYQLSRFLVKAELTGIDVCLCLNKSDLVTQLEQQQWRDRLHEWG 165
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S + GL+ L +L ++ TV GPSGVGKSSLIN L D++
Sbjct: 166 YQSLLISAYAHTGLEQLYNQLANKITVFAGPSGVGKSSLINYL--------IPDINT--- 214
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
RVGEVS K RG+HTTRHV L L GGG LADTPGFNQP + T + L
Sbjct: 215 -----------RVGEVSGKLSRGRHTTRHVELFELPGGGLLADTPGFNQPD-IDCTPEEL 262
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLR 316
A FPE ++ L +C FN+CLH EP CVV+GDWERY++Y L+E I + L
Sbjct: 263 ADYFPEAQQRLATQ---RCQFNDCLHRDEPNCVVRGDWERYEHYLDFLEEA-IVTQAHLH 318
Query: 317 TFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELD 367
G E ++ K G Q EP+LE KK+RR SR+ Q++ + E D
Sbjct: 319 QQGNP-ESTLKMKTKG-GKSQLEPKLETKKYRRVSRRTQQQNLQELYQETD 367
>gi|67921312|ref|ZP_00514831.1| Protein of unknown function DUF258 [Crocosphaera watsonii WH 8501]
gi|67857429|gb|EAM52669.1| Protein of unknown function DUF258 [Crocosphaera watsonii WH 8501]
Length = 377
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 208/350 (59%), Gaps = 28/350 (8%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ND LLC R LKKI + V+VGD+V+V D+ D RG I V R T++ PPV
Sbjct: 40 DYNDAAISHLLCTRRTRLKKIGQTVMVGDRVMVEEPDYQDARGAIAQVLDRKTQLSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFL++AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPLLEPWQLSRFLIKAESTEIPFLLCLNKADLLTSTQQKTWEERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PL SV++ GL++L L+D+ T++ GPSGVGKSSLIN L P
Sbjct: 160 WGYNPLLISVKTFQGLEALKNCLKDKITILAGPSGVGKSSLINTL--IPQVK-------- 209
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFN+P+ L +
Sbjct: 210 ------------QRVNRVSGKLQKGRHTTRHVELFELPQGGLLADTPGFNKPN-LDCSPS 256
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
L FPE ++ L E C F+NCLH GEP CV++ WERY++Y L+E ++E
Sbjct: 257 QLIHYFPEARKQL---ERGTCQFSNCLHRGEPNCVIEEKWERYEHYLTFLEEAIAQQEAT 313
Query: 315 LRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
+ +E ++ K+ G + EP+LE KK+RR SR++ +Q++ D D
Sbjct: 314 QQM--ADQESTLKVKIKTSGEEYYEPKLETKKYRRTSRRQKHQNLQDLYD 361
>gi|416382917|ref|ZP_11684375.1| Ribosome small subunit-stimulated GTPase EngC [Crocosphaera
watsonii WH 0003]
gi|357265330|gb|EHJ14109.1| Ribosome small subunit-stimulated GTPase EngC [Crocosphaera
watsonii WH 0003]
Length = 377
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 208/350 (59%), Gaps = 28/350 (8%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ND LLC R LKKI + V+VGD+V+V D+ D RG I V R T++ PPV
Sbjct: 40 DYNDAAISHLLCTRRTRLKKIGQTVMVGDRVMVEEPDYQDARGAIAQVLDRKTQLSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFL++AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPLLEPWQLSRFLIKAESTEIPFLLCLNKADLLTSTQQKTWEERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PL SV++ GL++L L+D+ T++ GPSGVGKSSLIN L P
Sbjct: 160 WGYNPLLISVKTFQGLEALKNCLKDKITILAGPSGVGKSSLINTL--IPQVK-------- 209
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFN+P+ L +
Sbjct: 210 ------------QRVNRVSGKLQKGRHTTRHVELFELPQGGLLADTPGFNKPN-LDCSPS 256
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQ 314
L FPE ++ L E C F+NCLH GEP CV++ WERY++Y L+E ++E
Sbjct: 257 QLIHYFPEARKQL---ERGTCQFSNCLHRGEPNCVIEEKWERYEHYLTFLEEAIAQQEAT 313
Query: 315 LRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
+ +E ++ K+ G + EP+LE KK+RR SR++ +Q++ D D
Sbjct: 314 QQM--ADQESTLKVKIKASGEEYYEPKLETKKYRRTSRRQKHQNLQDLYD 361
>gi|428202600|ref|YP_007081189.1| ribosome small subunit-dependent GTPase A [Pleurocapsa sp. PCC
7327]
gi|427980032|gb|AFY77632.1| ribosome small subunit-dependent GTPase A [Pleurocapsa sp. PCC
7327]
Length = 369
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 210/341 (61%), Gaps = 28/341 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V + D+ D RG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVAIEEPDYADERGAIAEVFPRKTELNRPPVANADQILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+ + L+RFLV+AESTG+ L L LNK +LV + +W+ RL WGY P+F S
Sbjct: 103 FALEEPSLDAWQLSRFLVKAESTGLDLCLCLNKTDLVTKTQQQSWEERLGEWGYRPVFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL+ LL RL+++ T++ GPSGVGKSSLIN L +
Sbjct: 163 IAANRGLEQLLDRLKNKITILAGPSGVGKSSLINKLIPAV-------------------- 202
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRV +VS K +G+HTTRHV L L GG LADTPGFNQP L LAQ FPE
Sbjct: 203 --EQRVSQVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPD-LDCDPAQLAQYFPEA 259
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+ L C FN+CLH EP C V+GDWERY++Y + L+E R+E +T E
Sbjct: 260 RMRLAQ---GNCQFNDCLHRDEPNCAVRGDWERYEHYLRFLEEAIARQEAIQQT--RDEE 314
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
V+ K+ +G Q EP+LE K++RR+SR+ +Q++ D D
Sbjct: 315 STVKLKIKALGQHQYEPKLETKRYRRRSRREKHQALQDLYD 355
>gi|443312688|ref|ZP_21042303.1| ribosome small subunit-dependent GTPase A [Synechocystis sp. PCC
7509]
gi|442777144|gb|ELR87422.1| ribosome small subunit-dependent GTPase A [Synechocystis sp. PCC
7509]
Length = 351
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 206/342 (60%), Gaps = 31/342 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RALLKK+ ++V+VGD+V V DW RG I VF R T++ PPVAN +LL+
Sbjct: 39 LLCTRRALLKKMGQKVMVGDRVEVVEPDWAGGRGAISQVFPRHTQLDRPPVANAQQILLV 98
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++PK+EP+ L+RFL++AE+TG+ + L LNK +L+ E L W+ RLH WGY+P+F S
Sbjct: 99 FALEEPKIEPYQLSRFLIKAETTGLEVYLYLNKSDLLTPEQLLDWRKRLHKWGYDPVFIS 158
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + ++ + +L ++ TV+ GPSGVGKSSLIN L P+A
Sbjct: 159 VH-QAAIEQIQGQLDNKITVVAGPSGVGKSSLINYL--IPNAK----------------- 198
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
R EVS K GRG+HTTRHV L L GG LADTPGFNQP L + L FPE
Sbjct: 199 ---VRTSEVSGKLGRGRHTTRHVELFQLPKGGLLADTPGFNQPD-LDCEPEELINYFPEA 254
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+E L A C FN+C H EP CVV+GDWERY++Y + L E R + RT +
Sbjct: 255 RERLAV---AHCQFNDCTHRDEPNCVVRGDWERYEHYLEFLAEAITRATLRDRTSDPEAT 311
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
++ K G Q EP+LE KK+RR SR R Q L + DE
Sbjct: 312 TKLKTKRGK---NQYEPKLETKKYRRTSR-RSQQQGLQKFDE 349
>gi|427724802|ref|YP_007072079.1| ribosome biogenesis GTPase RsgA [Leptolyngbya sp. PCC 7376]
gi|427356522|gb|AFY39245.1| ribosome biogenesis GTPase RsgA [Leptolyngbya sp. PCC 7376]
Length = 354
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 213/349 (61%), Gaps = 29/349 (8%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LLC R LKKI ++V+VGD+VVV ID D+RG I V R TE+ PPVAN + LL
Sbjct: 30 ADLLCTRRTRLKKIGQQVMVGDQVVVEEIDRQDKRGAIAAVLPRKTELDRPPVANANQLL 89
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+F++ +P L+P+ L+RFLV+AESTG+ L LALNK +L++ + W RL WGY+ +
Sbjct: 90 LVFALAEPALDPWQLSRFLVKAESTGLSLLLALNKQDLLESHECHAWHKRLSEWGYDAVL 149
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S+E ++GL+ L Q+L + +++ GPSGVGKSSLIN L P A+
Sbjct: 150 LSIEQRIGLEKLQQKLAGKISIVAGPSGVGKSSLINCL--IPEAT--------------- 192
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RVG+VS K RG+HTTRHV L L GG LAD+PGFNQP ++ Q+L FP
Sbjct: 193 -----LRVGQVSGKLQRGRHTTRHVELFELPCGGLLADSPGFNQPD-WQILPQALGNYFP 246
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTK 321
EI++ L A E C F +CLHL EP C V DWERY+ Y + LDE +E Q + +
Sbjct: 247 EIRQQL-AQE--NCQFKDCLHLQEPNCAVSDDWERYEIYQKFLDEAIAYKENQQQQRDEE 303
Query: 322 REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDD 370
+ V+ G +Q EP+L KK+RR SR+ +Q++ D ++ DD
Sbjct: 304 TQQKVKMTAGG---KQHEPKLATKKYRRTSRRERHQNLKDLYEKQSIDD 349
>gi|307153574|ref|YP_003888958.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7822]
gi|306983802|gb|ADN15683.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7822]
Length = 381
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 210/336 (62%), Gaps = 28/336 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ ID D RG I V R TE+ PPVAN + ++L+
Sbjct: 53 LLCTRRTRLKKIGQKVMVGDQVLIEEIDLADGRGAIAQVLPRKTELQRPPVANAEQIVLV 112
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P+ L+RFLV+AEST + + L LNK +L+ W+ RL WGYEP+ S
Sbjct: 113 FALEEPSLDPWQLSRFLVKAESTSLEICLCLNKADLITPHQQQQWQERLQQWGYEPVLIS 172
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V GL+ LL+RL+ + +++ GPSGVGKSSLIN L DV
Sbjct: 173 VAKNTGLEQLLKRLKGKISILAGPSGVGKSSLINKL--------IPDV------------ 212
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRV +VS K RG+HTTRHV L L GG LADTPGFNQP L LA FPE
Sbjct: 213 --EQRVNQVSGKLQRGRHTTRHVELFQLPLGGLLADTPGFNQPD-LDCDPTELAFYFPEA 269
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
K+ L E A C FN+CLH EP C+V+GDWERY+YY + L+E+ E + +E
Sbjct: 270 KKRL---ENAHCQFNDCLHRDEPNCLVRGDWERYEYYLKFLEEVIAFTETVKQL--PDQE 324
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
+++ K+ D G +Q EP+LE KK+RR SR++ +QS+
Sbjct: 325 SNLKLKIKDSGQEQYEPKLESKKYRRDSRRKKHQSL 360
>gi|411118347|ref|ZP_11390728.1| ribosome small subunit-dependent GTPase A [Oscillatoriales
cyanobacterium JSC-12]
gi|410712071|gb|EKQ69577.1| ribosome small subunit-dependent GTPase A [Oscillatoriales
cyanobacterium JSC-12]
Length = 400
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 204/332 (61%), Gaps = 32/332 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKK+ +RV+VGD+V + DW RG I + R++E+ PPVAN + +LL+
Sbjct: 80 LLCTRRSRLKKLGQRVMVGDRVEIEEPDWQGGRGAIARILPRTSELDRPPVANANQVLLV 139
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P LTRFL++AEST + + L L+K +LV + + W+ RLH WGYEP+F S
Sbjct: 140 FALAEPTLDPNQLTRFLIKAESTRLNVCLCLSKRDLVSQAEQDRWQQRLHQWGYEPIFIS 199
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ LL++LRD+ T++ GPSGVGKSSLIN L P A
Sbjct: 200 THKQQGIERLLEQLRDRITIVSGPSGVGKSSLINYL--VPQA------------------ 239
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RV +VS K RG+HTTRHV L L GG LADTPGFNQP L + ++LA FPE+
Sbjct: 240 --NLRVAKVSGKLARGRHTTRHVELFELPAGGLLADTPGFNQPE-LNCSPEALASYFPEV 296
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEF--QLRTFGTK 321
+ L C F+NCLH EPGCVV+GDWERY Y LL+E R+ Q RT
Sbjct: 297 QHRLVQT---FCQFSNCLHRNEPGCVVRGDWERYDSYLMLLEEAIARQTALEQTRT---- 349
Query: 322 REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
E ++ K G + EP+LE KK+RR SR+
Sbjct: 350 EESTLKVKTRRQGRETYEPKLELKKYRRLSRR 381
>gi|119486419|ref|ZP_01620477.1| ribosome-associated GTPase [Lyngbya sp. PCC 8106]
gi|119456321|gb|EAW37452.1| ribosome-associated GTPase [Lyngbya sp. PCC 8106]
Length = 389
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 207/366 (56%), Gaps = 49/366 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ DW RG I V R TE+ PP+AN D +LL+
Sbjct: 51 LLCTRRTRLKKIGQKVMVGDRVMIEEPDWTGGRGAIAEVLPRQTELTRPPIANADQILLV 110
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P AL+RFLV+AESTG+ + L LNK +LV + L W+ RL +WGY+P F S
Sbjct: 111 FAVAEPDLDPQALSRFLVKAESTGLEVCLGLNKCDLVTSQQLQHWRERLSSWGYQPFFIS 170
Query: 144 VESKLGL---------------------DSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
V + SL+ +L D+ TVI GPSGVGKSSLIN L
Sbjct: 171 VYQGVEFILEHDNEIQRYSISDFKSTINHSLIDQLTDKITVICGPSGVGKSSLINLL--- 227
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
D+ D RVG VS K GRG+HTTRHV L L G LADTPG
Sbjct: 228 -----IPDI--------------DLRVGAVSGKLGRGRHTTRHVELFELPSKGLLADTPG 268
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQ 302
FNQP LL+ Q LA FPE ++ L C F++CLH EP CVV+ DWERY +Y
Sbjct: 269 FNQP-LLECEPQELADYFPEARQRLAT---GNCQFSDCLHRDEPNCVVREDWERYSFYLD 324
Query: 303 LLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDE 362
L E R+E + E + K G QQ EP+LE KK+RR SR+ +Q++ D
Sbjct: 325 FLAEAIKRQEALHQQ--PDAESSFKSKTKSGGKQQDEPKLESKKYRRSSRRIQHQTLQDL 382
Query: 363 LDELDD 368
+E++D
Sbjct: 383 CEEMED 388
>gi|443328253|ref|ZP_21056853.1| ribosome small subunit-dependent GTPase A [Xenococcus sp. PCC 7305]
gi|442792099|gb|ELS01586.1| ribosome small subunit-dependent GTPase A [Xenococcus sp. PCC 7305]
Length = 369
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/321 (47%), Positives = 195/321 (60%), Gaps = 28/321 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGDKV + DW D RG I ++ R+TE+ PPVAN D +LL+
Sbjct: 41 LLCTRRTRLKKIGQKVMVGDKVAIEEPDWQDGRGAIADILSRTTELQRPPVANADLMLLV 100
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++PKL+P+ L+RFLV+ ESTG+ L L LNK +L+ E W++RL +WGY + S
Sbjct: 101 FAVEEPKLDPWQLSRFLVQTESTGLELCLCLNKCDLIPESEQQQWQARLASWGYNAVLIS 160
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
G+DSLL RL+D+ TV+VGPSGVGKSSLIN L DV+
Sbjct: 161 TIQNYGIDSLLSRLKDKITVVVGPSGVGKSSLINQL--------IPDVE----------- 201
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVG VS K RG+HTTRHV L L GGG LAD+PGFNQPS+ LA FPE
Sbjct: 202 ---VRVGRVSGKLQRGRHTTRHVELFELPGGGLLADSPGFNQPSM-NYNPTDLALYFPEA 257
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+ L N C F++CLH EP CVV+GDWERY+YY LD+ ++ Q E
Sbjct: 258 RNRLADN---LCQFSDCLHRDEPNCVVRGDWERYEYYLDFLDKAIAFQKSQQDN--PDEE 312
Query: 324 GDVRYKVGDMGVQQAEPRLEP 344
+V+ K+ G Q EPRL
Sbjct: 313 SNVKLKIKRAGKDQYEPRLAR 333
>gi|75906606|ref|YP_320902.1| ribosome-associated GTPase [Anabaena variabilis ATCC 29413]
gi|123731639|sp|Q3MG79.1|RSGA_ANAVT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|75700331|gb|ABA20007.1| GTPase EngC [Anabaena variabilis ATCC 29413]
Length = 370
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 201/340 (59%), Gaps = 28/340 (8%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARE 273
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
L A C FN+CLH EP C V+GDWERY++Y + L + I + QL E
Sbjct: 274 RLAV---ASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-EST 328
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
++ K G Q EP+LE KK+RR SR+ Q + D E
Sbjct: 329 LKLKTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQE 368
>gi|425468962|ref|ZP_18847936.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9701]
gi|389884378|emb|CCI35319.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9701]
Length = 358
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 214/354 (60%), Gaps = 29/354 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V +++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEVNFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEAEQIELWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAITREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-LDELDELDDDDNDD 373
+E ++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 356
>gi|390441189|ref|ZP_10229343.1| putative ribosome biogenesis GTPase RsgA [Microcystis sp. T1-4]
gi|389835502|emb|CCI33469.1| putative ribosome biogenesis GTPase RsgA [Microcystis sp. T1-4]
Length = 358
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 209/337 (62%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V +++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEVNFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY+P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIELWGDRLAGWGYQPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRVKNQ 339
>gi|440756226|ref|ZP_20935427.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
TAIHU98]
gi|440173448|gb|ELP52906.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
TAIHU98]
Length = 358
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAITREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|425438232|ref|ZP_18818637.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9432]
gi|389676615|emb|CCH94373.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9432]
Length = 358
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|425454672|ref|ZP_18834402.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9807]
gi|389804605|emb|CCI16262.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9807]
Length = 358
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAAWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + K + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-KCLPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE+++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRQRLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|425460796|ref|ZP_18840277.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9808]
gi|389826472|emb|CCI22975.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9808]
Length = 358
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|425452513|ref|ZP_18832330.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 7941]
gi|389765669|emb|CCI08507.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 7941]
Length = 358
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVIPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEAEQIELWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++E L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRERLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAITREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|119513120|ref|ZP_01632172.1| ribosome-associated GTPase [Nodularia spumigena CCY9414]
gi|119462217|gb|EAW43202.1| ribosome-associated GTPase [Nodularia spumigena CCY9414]
Length = 377
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 207/346 (59%), Gaps = 32/346 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I NV R + + P +ANVD +LL
Sbjct: 61 LLCTRRTRLKKIGQQVMVGDRVIVSEPDWSGGRGAISNVLPRESLLDRPAIANVDQILLA 120
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AEST + + L LNK +LV +V RL WGY+PLF S
Sbjct: 121 FAVTDPPLEPYQLSRFLLKAESTDVDVLLCLNKSDLVSPQVQQEISDRLLGWGYKPLFIS 180
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ + +D+LL+ L + TVI GPSGVGKSSLIN L P L
Sbjct: 181 VQNNINIDALLKYLNHKITVIAGPSGVGKSSLINVLI----------------PTL---- 220
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEVS K RG+HTTRH L L GGG LADTPGFNQP L + L FPE
Sbjct: 221 --NLRVGEVSGKLARGRHTTRHTELFELPGGGLLADTPGFNQPD-LDCRPEELIYYFPEA 277
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+E L A C F++CLH EP CVV+GDWERY++Y + LD+ I + L E
Sbjct: 278 RERLAV---ASCRFSDCLHRDEPDCVVRGDWERYEHYLEFLDQA-IAHQTHLHQQADP-E 332
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDD 369
++ K G QQ EP+LE KK+RR SRK + L EL++L ++
Sbjct: 333 STMKIKSKGQGKQQYEPKLESKKYRRVSRK----TQLQELEQLYNE 374
>gi|308808352|ref|XP_003081486.1| unnamed protein product [Ostreococcus tauri]
gi|116059949|emb|CAL56008.1| unnamed protein product [Ostreococcus tauri]
Length = 534
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 213/371 (57%), Gaps = 48/371 (12%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
ELLCV RALLKKIK+RVLVGD+V + IDWV+ R +I++V R +E+++PP+ANVD L
Sbjct: 125 TELLCVARALLKKIKKRVLVGDEVELSGIDWVENRAVIDDVVGRRSELVEPPIANVDQAL 184
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+FS++QP LE LTRFLV E+T +P TL LNK EL+ +E + W++RL WGY+
Sbjct: 185 LVFSLEQPPLEAKQLTRFLVSMEATKVPFTLVLNKCELLSDEEVADWRARLEGWGYDAKI 244
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA------------ 189
SV + G+D L + LR +TTV+ GPSGVGKSSLIN R + A
Sbjct: 245 VSVATGRGVDELEEALRGKTTVLAGPSGVGKSSLINRFRYGSALAGALESVESSTSTSEG 304
Query: 190 ---------------DVDNWFEPIL--GSKWFED------------QRVGEVSTKSGRGK 220
D++ + GS+ ED Q V V ++SGRG+
Sbjct: 305 SDSEGEEAARYITDLDIEGGGGGGVKRGSRSIEDEKWRVDLASLDLQSVKGVGSRSGRGR 364
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTTRHVSLL L GG+LADTPGF PSL + LA FPEI+ ++ N A+C F +C
Sbjct: 365 HTTRHVSLLTLDIGGFLADTPGFGYPSLEGFDTEKLAMCFPEIRNAIE-NSDARCQFADC 423
Query: 281 LHLGEPGCVVKGD-WE--RYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVG-DMGVQ 336
H EPGC V + WE RY Y++L +E++ E + + + RE V+ K
Sbjct: 424 THRHEPGCAVADECWEEQRYDLYYELFEEVKQIAENERQAY--FRESRVKTKSATGKDAT 481
Query: 337 QAEPRLEPKKH 347
+ E +LE K H
Sbjct: 482 RIEAKLETKSH 492
>gi|425440032|ref|ZP_18820341.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9717]
gi|389719608|emb|CCH96572.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9717]
Length = 358
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 208/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN+L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINSL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE+++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRQRLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
+E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|427706647|ref|YP_007049024.1| ribosome biogenesis GTPase RsgA [Nostoc sp. PCC 7107]
gi|427359152|gb|AFY41874.1| ribosome biogenesis GTPase RsgA [Nostoc sp. PCC 7107]
Length = 359
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 204/338 (60%), Gaps = 28/338 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I V R+ ++ P +ANV+ ++L+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAISEVLPRTGQLDRPAIANVNQIMLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFLV+AESTG + + LNK +L+ + RL WGYEPLF S
Sbjct: 103 FAVADPPLEPYQLSRFLVKAESTGWDVVICLNKSDLISAQEQREISDRLLGWGYEPLFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+S L +D +L L +TTVI GPSGVGKSSLINAL D+
Sbjct: 163 VQSSLNIDQILTYLSHKTTVIAGPSGVGKSSLINAL--------IPDI------------ 202
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGE+S K RG+HTTRHV L L GG LADTPGFNQP L + L Q FPE
Sbjct: 203 --NLRVGEISGKLARGRHTTRHVELFELPDGGLLADTPGFNQPD-LDYQPEELVQYFPEA 259
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+++LK A C F++CLH EP C V+G+WERY++Y + LDE I + QL E
Sbjct: 260 RKLLKV---AHCRFSDCLHRDEPDCAVQGNWERYEHYVEFLDEA-IARQTQLNQ-QADPE 314
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
++ K G + EP+LE KK+RR SRK Q++ D
Sbjct: 315 STLKLKTKGKGQSKYEPKLESKKYRRISRKTQLQALQD 352
>gi|427733745|ref|YP_007053289.1| ribosome small subunit-dependent GTPase A [Rivularia sp. PCC 7116]
gi|427368786|gb|AFY52742.1| ribosome small subunit-dependent GTPase A [Rivularia sp. PCC 7116]
Length = 392
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 200/329 (60%), Gaps = 28/329 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+VV+ DW RG I +VF R +E+ P +ANV+ +LL+
Sbjct: 76 LLCTRRSRLKKIGQQVIVGDRVVIEEPDWAGGRGAIGDVFPRHSELDRPAIANVNQILLV 135
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFLV+ ESTG+ + L LNK +L+ + K RL+ WGY+P F S
Sbjct: 136 FAVTDPPLEPYQLSRFLVKGESTGLDVVLCLNKSDLIASQEQAEIKERLNAWGYQPEFIS 195
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + +D++ LR + TVI G SGVGKSSLIN L P+A
Sbjct: 196 VYKDINIDAVENILRSKITVIAGASGVGKSSLINTL--IPNA------------------ 235
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RV EVS K RG+HTTRHV L + GGG LADTPGFNQP L T + L FPE
Sbjct: 236 --NLRVAEVSGKLARGRHTTRHVELFEIPGGGLLADTPGFNQPD-LDCTPEELVSYFPEA 292
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+ L++ C FNNCLH EP CVV+GDWERYQ Y + L+E R+ + + E
Sbjct: 293 MQRLQS---GSCRFNNCLHRNEPDCVVRGDWERYQDYLEFLEEAIERQTWLKQQ--ADPE 347
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSR 352
+++ K G QQ EPRLE KK+RR SR
Sbjct: 348 SNMKLKTKGKGRQQYEPRLESKKYRRVSR 376
>gi|422301740|ref|ZP_16389105.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9806]
gi|389789110|emb|CCI14760.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9806]
Length = 358
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/354 (42%), Positives = 213/354 (60%), Gaps = 29/354 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGGVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPDI-NCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE+++ L C FN+C H EP CVV+GDWERYQ+Y + L+E +RE+ +T +
Sbjct: 248 PEVRQRLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEALVREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-LDELDELDDDDNDD 373
+E ++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 356
>gi|354566831|ref|ZP_08986002.1| ribosome biogenesis GTPase RsgA [Fischerella sp. JSC-11]
gi|353544490|gb|EHC13944.1| ribosome biogenesis GTPase RsgA [Fischerella sp. JSC-11]
Length = 369
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 203/341 (59%), Gaps = 32/341 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+V+V DW +RG I +V R ++ P +ANV+ +LL+F+
Sbjct: 55 CTRRTRLKKIGQQVMVGDRVLVEEPDWTGQRGAIADVLPRKNQLDRPAIANVNQILLVFA 114
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFL++AESTG+ + L LNK +L+ + L WGYEP+F SV
Sbjct: 115 VADPPLEPYQLSRFLIKAESTGLDVVLCLNKSDLITTQQQAEINQHLTNWGYEPIFISVY 174
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D L L+D TV+ GPSGVGKSSLINAL + N
Sbjct: 175 KSINIDDLANLLKDNITVLAGPSGVGKSSLINAL-----------IPNI----------- 212
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ RVGE+S K RG+HTTRHV L L GG LADTPGFNQP L T + LA FPE ++
Sbjct: 213 NLRVGEISGKLARGRHTTRHVELFDLPNGGLLADTPGFNQPDL-DCTPEELAAYFPEARQ 271
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
L A+C F+NCLH EP C V+GDWERYQ+Y + L+E R+ QL E
Sbjct: 272 RLAV---ARCRFSNCLHRDEPDCAVRGDWERYQHYLEFLEEAIARQS-QLNQQADP-EST 326
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDEL 366
++ K G Q EP+LE KK+R++SR+ + L EL EL
Sbjct: 327 IKVKTKGKGKHQYEPKLESKKYRQKSRR----TQLQELQEL 363
>gi|427731680|ref|YP_007077917.1| ribosome small subunit-dependent GTPase A [Nostoc sp. PCC 7524]
gi|427367599|gb|AFY50320.1| ribosome small subunit-dependent GTPase A [Nostoc sp. PCC 7524]
Length = 372
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 203/342 (59%), Gaps = 28/342 (8%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN + ++L+F+
Sbjct: 59 CTRRTRLKKIGQQVMVGDRVVVEEPDWSGGRGAIAEVLSRQTQLDRPPIANANQIMLVFA 118
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEPF L+RFL++AESTG+ + L LNK +LV + RL WGY+PLF SV+
Sbjct: 119 VADPPLEPFQLSRFLIKAESTGLDVVLCLNKSDLVSPDEKQEISDRLLAWGYQPLFISVK 178
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+++ +D + + L + TV+ GPSGVGKSSLINAL D+
Sbjct: 179 NEINIDQVAKDLNHKITVVAGPSGVGKSSLINAL--------IPDI-------------- 216
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E
Sbjct: 217 NLRVGEVSGKLARGRHTTRHVELFELPSGGLLADTPGFNQPD-VDCSPEELVYYFPEARE 275
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
L A C FN+CLH EP CVV+G+WERY++Y LDE I + QL E
Sbjct: 276 RLAV---ASCRFNDCLHRDEPDCVVRGEWERYEHYVDFLDEA-IARQTQLNQQADP-EST 330
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELD 367
++ K G Q EP+LE KK+RR SR+ Q++ D E D
Sbjct: 331 LKRKTKGKGQNQYEPKLESKKYRRTSRRTQVQALQDLYQEDD 372
>gi|443669281|ref|ZP_21134514.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
DIANCHI905]
gi|159029435|emb|CAO90813.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330443|gb|ELS45158.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
DIANCHI905]
Length = 358
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 208/337 (61%), Gaps = 28/337 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL +WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWGDRLASWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE+++ L C FN+C H EP CVV+GDW+RYQ+Y + L+E RE+ L+ T
Sbjct: 248 PEVRQRLAL---GNCQFNDCTHRREPNCVVRGDWDRYQHYLEFLEEAIAREQ-SLQKSST 303
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ 357
K E ++ K+ + G + EP+L KK+RR SR+ NQ
Sbjct: 304 K-ESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQ 339
>gi|17229941|ref|NP_486489.1| ribosome-associated GTPase [Nostoc sp. PCC 7120]
gi|38257718|sp|Q8YUA3.1|RSGA1_ANASP RecName: Full=Putative ribosome biogenesis GTPase RsgA 1
gi|17131541|dbj|BAB74148.1| alr2449 [Nostoc sp. PCC 7120]
Length = 370
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 201/337 (59%), Gaps = 28/337 (8%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE +E L
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA 276
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRY 328
A C FN+C H EP C V+GDWERY++Y + L + I + QL E ++
Sbjct: 277 I---ASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKL 331
Query: 329 KVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365
K G Q EP+LE KK+RR SR+ Q + D E
Sbjct: 332 KTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQE 368
>gi|425463481|ref|ZP_18842816.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9809]
gi|389832217|emb|CCI24351.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9809]
Length = 358
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 214/354 (60%), Gaps = 29/354 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL +WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLASWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + +Q L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDINCLPEQ-LTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRARLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-LDELDELDDDDNDD 373
+E ++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 356
>gi|434407645|ref|YP_007150530.1| ribosome small subunit-dependent GTPase A [Cylindrospermum stagnale
PCC 7417]
gi|428261900|gb|AFZ27850.1| ribosome small subunit-dependent GTPase A [Cylindrospermum stagnale
PCC 7417]
Length = 358
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 206/351 (58%), Gaps = 28/351 (7%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D + + LLC R LKKI ++V+VGD+V++ DW RG + +V R +E+ P +ANV
Sbjct: 36 DNSRLILLCTRRTRLKKIGQQVMVGDRVIIEEPDWAGGRGAVADVLPRHSELDRPAIANV 95
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+ +LL+F++ P LEP+ L+RFLV+AE+TG+ + L LNK +L+ E RL WGY
Sbjct: 96 NQILLVFAVADPPLEPYQLSRFLVKAETTGVDVLLCLNKSDLITPEAQQQISDRLSAWGY 155
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+PLF SV+++L LD + Q L ++ TV+ GPSGVGKSSLIN L
Sbjct: 156 QPLFISVQNQLNLDQVSQHLSNKITVVAGPSGVGKSSLINQLIPD--------------- 200
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ RVGEVS K RG+HTTRH+ L L GG LADTPGFNQP L T + L
Sbjct: 201 -------TNLRVGEVSGKLARGRHTTRHIELFDLPNGGLLADTPGFNQPD-LDCTPEELL 252
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRT 317
FPE + L A C F++C H EP CVV+G+WERY +Y Q L+E I ++ L
Sbjct: 253 YYFPEARARLAV---ASCRFSDCSHRDEPDCVVRGEWERYPHYLQFLEEA-IAQQTHLH- 307
Query: 318 FGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E ++ K G Q EP+LE KK+RR +RK Q++ D E D+
Sbjct: 308 HQADPESSMKLKSKGKGQSQYEPKLESKKYRRIARKTQLQALQDMYKESDE 358
>gi|428206760|ref|YP_007091113.1| ribosome small subunit-dependent GTPase A [Chroococcidiopsis
thermalis PCC 7203]
gi|428008681|gb|AFY87244.1| ribosome small subunit-dependent GTPase A [Chroococcidiopsis
thermalis PCC 7203]
Length = 368
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 201/325 (61%), Gaps = 31/325 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKK+ ++V+VGD+VV+ DW RG I V R +++ P +AN +LL+
Sbjct: 53 LLCTRRARLKKLGQQVMVGDRVVIEEPDWAGGRGAIGEVLPRQSQLDRPAIANAQQILLV 112
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P+ L++FLV+AESTG+ + L LNK +L+ + ++ W+ RL+ WGY+PLF S
Sbjct: 113 FALAEPDLDPYQLSKFLVKAESTGLEICLCLNKSDLLSVQQIDNWRDRLNRWGYQPLFIS 172
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V G+D + QRL+++ TVI GPSGVGKSSLIN L P A
Sbjct: 173 VHQGFGVDRVSQRLQEKITVIAGPSGVGKSSLINML--IPEAG----------------- 213
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L T + LA FPE
Sbjct: 214 ---LRVGEVSGKLLRGRHTTRHVELFELPTGGLLADTPGFNQPD-LDCTPEELASYFPEA 269
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEFQLRTFGTKR 322
K+ L A C F++CLH EP CVV+GDWERYQ+Y LL+E I RE+ +
Sbjct: 270 KQRLAV---ASCQFSDCLHRDEPNCVVRGDWERYQHYLDLLEEAIADREQLARQ---ANP 323
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKH 347
E +++ K G Q EP+LE KK+
Sbjct: 324 ESNLKLKT-KRGKSQYEPKLETKKY 347
>gi|166367683|ref|YP_001659956.1| ribosome-associated GTPase [Microcystis aeruginosa NIES-843]
gi|254766815|sp|B0JW21.1|RSGA_MICAN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|166090056|dbj|BAG04764.1| probable GTPase engC protein 1 [Microcystis aeruginosa NIES-843]
Length = 358
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/354 (42%), Positives = 211/354 (59%), Gaps = 29/354 (8%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCLPEELTFYF 247
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE++ L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T +
Sbjct: 248 PEVRARLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--S 302
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI-LDELDELDDDDNDD 373
+E ++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 303 TKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 356
>gi|427717142|ref|YP_007065136.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 7507]
gi|427349578|gb|AFY32302.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 7507]
Length = 359
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 198/338 (58%), Gaps = 28/338 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I V R +++ PP+ANV+ +LL+
Sbjct: 43 LLCTRRMRLKKIGQQVMVGDRVVVEEPDWSGGRGAIAEVLSRQSQLDRPPIANVNQILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AEST + + L LNK +LV E RL WGY+P+F S
Sbjct: 103 FAVADPPLEPYQLSRFLIKAESTDVDVVLCLNKSDLVTPEEQQQISDRLCAWGYQPIFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V ++L +D + L ++ TVI GPSGVGKSSLIN L +
Sbjct: 163 VSNELNIDQVANYLSNKMTVIAGPSGVGKSSLINKLIPN--------------------- 201
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L T + L FPE
Sbjct: 202 -TNLRVGEVSGKLARGRHTTRHVELFELPDGGLLADTPGFNQPD-LDCTPEELIHYFPEA 259
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+E L C F++C+H EP CVV+GDWERY +Y + LD+ I + L E
Sbjct: 260 RERLAV---GSCRFSDCVHHDEPDCVVRGDWERYAHYLEFLDQA-IAHQTHLHQQADP-E 314
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
+++ K G Q EP+LE KK+RR +RK Q + D
Sbjct: 315 SNMKLKSKGKGQSQYEPKLESKKYRRIARKTQLQDLQD 352
>gi|443320128|ref|ZP_21049250.1| ribosome small subunit-dependent GTPase A [Gloeocapsa sp. PCC
73106]
gi|442790148|gb|ELR99759.1| ribosome small subunit-dependent GTPase A [Gloeocapsa sp. PCC
73106]
Length = 358
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 202/348 (58%), Gaps = 30/348 (8%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
C D ELLC R LKKI ++ +VGDKV V D RG I + R + P +A
Sbjct: 25 CTDDK--ELLCTCRGRLKKIGQKAMVGDKVKVIEPAVRDGRGSIVEILPRHNLLSRPAIA 82
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
NVDHLLLLF++ P LE + L+RFLV+AEST I L+L LNK +LV + W SR+ TW
Sbjct: 83 NVDHLLLLFALKDPPLEAWQLSRFLVKAESTQIKLSLCLNKADLVTDTERQDWHSRVQTW 142
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GYEP+ SV S+LG+ L RL + T++ GPSGVGKS+L NAL P
Sbjct: 143 GYEPIIVSVTSQLGMSQLQARLDGKITILAGPSGVGKSTLTNAL--IPEV---------- 190
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
+QRV VS K G+HTTRHV L L G G++AD+PGFNQP L+ +
Sbjct: 191 ----------NQRVNTVSGKLHLGRHTTRHVELFSLPGSGFIADSPGFNQPD-LQSEPRE 239
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315
LA FPEI ++L C FN+CLH EP C V+GDWERY +Y + L+E+ Q
Sbjct: 240 LALYFPEIIKLLSEK---NCQFNDCLHRDEPNCAVRGDWERYPHYLKFLEELTELSSQQQ 296
Query: 316 RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDEL 363
+ E V+ K+G G EP+LE KK+RR SR+ +Q++ +++
Sbjct: 297 QK--PDLESQVKLKIGSAGEHYYEPKLESKKYRRLSRREKHQTLQEQV 342
>gi|254414538|ref|ZP_05028304.1| ribosome small subunit-dependent GTPase A, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178768|gb|EDX73766.1| ribosome small subunit-dependent GTPase A, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 365
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 191/324 (58%), Gaps = 28/324 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI +RV+VGD+VV+ DW RG I V R T++ PPVAN + +LL+
Sbjct: 48 LLCTRRSRLKKIGQRVMVGDRVVIEEPDWTGNRGAIAEVLPRKTQLDRPPVANAEQILLV 107
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+ + L+RFLV+AESTG + L LNK +LV E W+ RL+ WGY+P+F S
Sbjct: 108 FALAEPTLDAYQLSRFLVKAESTGFQVCLCLNKSDLVTPEEQQQWQQRLNAWGYQPIFIS 167
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + GL L RL + TV+ G SGVGKSSLIN L +P A
Sbjct: 168 VYTNTGLAELSDRLNQKITVLAGLSGVGKSSLINQL--APEA------------------ 207
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEV+ K GRG+HTTRHV L L GG LADTPGFNQP L T L FPE
Sbjct: 208 --NLRVGEVTGKLGRGRHTTRHVELFELPQGGLLADTPGFNQPD-LDCTPADLIHHFPEA 264
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L A C F++CLH EP C V+GDWERY +Y L+E R+E + E
Sbjct: 265 RQQLTV---ASCQFSDCLHRDEPNCAVQGDWERYDHYLGFLEEAIARQERLNQQ--ADPE 319
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKH 347
++ K+ G Q EP+L KK+
Sbjct: 320 STLKEKIKGKGQTQYEPKLNTKKY 343
>gi|220910045|ref|YP_002485356.1| ribosome-associated GTPase [Cyanothece sp. PCC 7425]
gi|219866656|gb|ACL46995.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7425]
Length = 364
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 200/341 (58%), Gaps = 33/341 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
ELLC R+ LKKI ++V+VGD+V V DW +RG I V R T++ PPVAN D +
Sbjct: 47 ATELLCTRRSRLKKIGQQVMVGDRVGVEEPDWAGQRGAIAEVLPRQTQLSRPPVANADQI 106
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P +P+ L+RFLV AE+TG+ + L L+K +LV E W RL WGYEPL
Sbjct: 107 LLVFALAEPHPDPYQLSRFLVTAETTGLEVVLCLSKADLVSEPEEQQWCDRLQQWGYEPL 166
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ ++ GL L +L +V+ GPSGVGKSSLIN L
Sbjct: 167 LISLLTQQGLGELTSQLGGHLSVVSGPSGVGKSSLINQLIP------------------- 207
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ RVG+VS ++GRG+HTTRHV L L GG LADTPGFNQP+L+ +T L F
Sbjct: 208 ---LANSRVGQVS-QAGRGRHTTRHVELFGLPAGGLLADTPGFNQPALV-MTPTELVHCF 262
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI--RIREEFQLRTF 318
PE ++ L A C F++CLH EP C V+GDWERY +Y L E+ + ++ +R
Sbjct: 263 PEARQRLAI---ATCQFSDCLHREEPNCAVRGDWERYPHYLDFLAEVLAQTAQQHAMR-- 317
Query: 319 GTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
+ E ++ K G G + EP+L+ K +RR SR+ Q +
Sbjct: 318 --ETEPTLKRKTGTQGQNRYEPKLQTKTYRRPSRRTQQQDL 356
>gi|186680672|ref|YP_001863868.1| ribosome-associated GTPase [Nostoc punctiforme PCC 73102]
gi|186463124|gb|ACC78925.1| ribosome small subunit-dependent GTPase A [Nostoc punctiforme PCC
73102]
Length = 366
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/347 (44%), Positives = 204/347 (58%), Gaps = 32/347 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I +V R +E+ P +ANV+ +LL+
Sbjct: 51 LLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLPRHSELDRPAIANVNQILLV 110
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AESTG+ + L LNK +L+ E RL WGY+P+F S
Sbjct: 111 FAVADPPLEPYQLSRFLIKAESTGLDVLLCLNKSDLISESEQQKVSDRLLGWGYQPIFIS 170
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + D + L ++ TVI GPSGVGKSSLIN L D+A +
Sbjct: 171 VKDGINTDQSGRYLSNKITVIAGPSGVGKSSLINTL------IDSAKL------------ 212
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVGEVS K RG+HTTRH+ L L GG LADTPGFNQP + + L FPE
Sbjct: 213 ----RVGEVSGKLARGRHTTRHIELFELPSGGMLADTPGFNQPD-MDCIPEELIHYFPEA 267
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L A C F++CLH EP CVV+GDWERY++Y + LD I + QL E
Sbjct: 268 RKRLAV---ASCRFSDCLHRDEPECVVRGDWERYEHYLEFLDAA-IAHQTQLHQQADP-E 322
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDD 370
++ K G Q EP+LE KK+RR SRK + L +L EL D+
Sbjct: 323 STMKLKSKGKGQSQYEPKLESKKYRRISRK----TQLQDLQELYRDE 365
>gi|332710101|ref|ZP_08430054.1| ribosome small subunit-dependent GTPase A [Moorea producens 3L]
gi|332351059|gb|EGJ30646.1| ribosome small subunit-dependent GTPase A [Moorea producens 3L]
Length = 375
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 208/350 (59%), Gaps = 40/350 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI ++V+VGD+V+V DW RG+I V R++++ PP+AN +L++
Sbjct: 59 LLCTRRARLKKIGQQVMVGDRVLVEEPDWAGGRGVIAEVLPRTSQLDRPPIANAQQILVV 118
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+ + L+RFLV+AESTG + L LNK++LV ++ W+ RL WGY+P+ S
Sbjct: 119 FALEEPTLDAYQLSRFLVKAESTGFKVCLCLNKLDLVTQQQQQDWQQRLEAWGYQPVLIS 178
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + L L L +V+ G SGVGKSSLIN L +
Sbjct: 179 VHNGTCLAQLTDLLSQTISVMAGLSGVGKSSLINYLIPATRV------------------ 220
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RV V+ K GRG+HTTRHV L L GG+LADTPGFNQP L + + L FPE
Sbjct: 221 ----RVAAVTGKLGRGRHTTRHVELFELPKGGFLADTPGFNQPDL-TCSPEDLIYYFPEA 275
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+E L + +C F+NCLH EP C V+GDWERYQ+Y L E+ R+E K++
Sbjct: 276 RERLAQH---RCQFSNCLHRDEPNCAVRGDWERYQHYLDFLAEVIARQE------ALKQK 326
Query: 324 GDV----RYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDD 369
D+ + K+ G +Q EP+LE KK+RR+SR+ +Q+ LDEL DD
Sbjct: 327 ADIESSMKLKIKASGRRQYEPKLETKKYRRRSRRTQHQN----LDELYDD 372
>gi|255082748|ref|XP_002504360.1| predicted protein [Micromonas sp. RCC299]
gi|226519628|gb|ACO65618.1| predicted protein [Micromonas sp. RCC299]
Length = 347
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/327 (47%), Positives = 191/327 (58%), Gaps = 18/327 (5%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D+ ELLCVVRALLKKIK+RVLVGD V V IDWVD+R M+E V R +E++DPPVAN
Sbjct: 30 GDEGPYELLCVVRALLKKIKQRVLVGDAVDVLGIDWVDQRAMVETVHARRSELVDPPVAN 89
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VDH LL+F++++P LE LTRFLV E+TG+P TL LNK +L EE W +RL WG
Sbjct: 90 VDHALLVFALERPPLEAKQLTRFLVSMEATGVPFTLVLNKSDLCSEEQKADWAARLEQWG 149
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
Y P F SV + G D TV+ GPSGVGKSSLIN LR+ A
Sbjct: 150 YVPRFVSVATGEGEDGFGSLSGPDPGPRSVTVLAGPSGVGKSSLINRLRAGGGGGGARGS 209
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+ E Q V VS+K GRG+HTTRHV+LLPL GG LADTPGF PSL +
Sbjct: 210 -------ISLDGLELQSVKAVSSKLGRGRHTTRHVTLLPLRSGGLLADTPGFGYPSLNTL 262
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK--GDWE--RYQYYFQLLDEI 307
T +L + FPEI + + C F++C H EPGCVV WE RY +Y + DE+
Sbjct: 263 TTATLPECFPEI--VRAKTQLGACKFSDCTHRDEPGCVVDELMPWEEDRYDFYADMFDEV 320
Query: 308 RIREEFQLRTFGTKREGDVRYKVGDMG 334
E + E +YK G G
Sbjct: 321 EQIERVERERGKRVSEQRTKYKSGKGG 347
>gi|443316736|ref|ZP_21046169.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
gi|442783647|gb|ELR93554.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
Length = 410
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 199/345 (57%), Gaps = 28/345 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI ++V+VGD V + DW RG I V R +++ PPVAN + +LL+
Sbjct: 78 LLCTRRARLKKIGQQVMVGDWVRIEEPDWEGGRGAIAAVAPRQSQLDRPPVANANQILLV 137
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS+ +P L+P L+RFLV+AE+TGI + L LNK +LV V +W RL WGY + S
Sbjct: 138 FSLAEPDLDPHQLSRFLVQAETTGIEIALVLNKRDLVTASVAESWGERLQRWGYSAVVTS 197
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+++ L LRD+ T+I GPSGVGKSSLIN L + H
Sbjct: 198 VQTQDPWLPLGDMLRDRVTIISGPSGVGKSSLINGLIPAAHL------------------ 239
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
R G VS K GRG+HTTRHV L L GG LADTPGFNQP + + L FPE+
Sbjct: 240 ----RTGTVSGKLGRGRHTTRHVELFELPTGGLLADTPGFNQPD-IHCAPEELGYYFPEV 294
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+ + A C F +CLH GEPGC V DWERY Y LL++ + Q R + R+
Sbjct: 295 CDRIAI---APCQFADCLHQGEPGCTVGEDWERYDDYLALLEDCLAQS--QQRHDTSDRD 349
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
++ KVG+ G EPRL+ KK+RR SR+ +QS+ + EL D
Sbjct: 350 TTLKTKVGEAGQVYHEPRLQAKKYRRLSRRSRHQSLQELRYELTD 394
>gi|414078371|ref|YP_006997689.1| ribosome small subunit-dependent GTPase A [Anabaena sp. 90]
gi|413971787|gb|AFW95876.1| ribosome small subunit-dependent GTPase A [Anabaena sp. 90]
Length = 385
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 203/349 (58%), Gaps = 32/349 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG + V R +++ P +ANV+ +LL+
Sbjct: 69 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWTGGRGAVGEVLPRHSQLNRPAIANVNQILLV 128
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +LV E RL WGY+PLF S
Sbjct: 129 FAVADPPLEPIQLSRFLIKAESTGVDVLLCLNKCDLVSLEEKQQINDRLLAWGYQPLFIS 188
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ + ++ + L+D+ TVI GPSGVGKSSLIN+L D+
Sbjct: 189 VQNNININQIATYLQDKITVIAGPSGVGKSSLINSL--------IPDI------------ 228
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + Q L FPE
Sbjct: 229 --NLRVGEVSGKLARGRHTTRHVELFEMPKGGLLADTPGFNQPD-LDCSPQELIHYFPEA 285
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+E L A C F++C+H EP C V GDWERYQ+Y + L++ + + E
Sbjct: 286 RERLAV---AHCRFSDCIHKDEPDCAVSGDWERYQHYLEFLEDALAHQSHLNQQ--ADPE 340
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDND 372
+++ G Q EP+LE KK+RR +RK + L +L EL + D
Sbjct: 341 SNLKLISKGKGQSQYEPKLESKKYRRIARK----TQLQDLQELYRESED 385
>gi|254422162|ref|ZP_05035880.1| ribosome small subunit-dependent GTPase A, putative [Synechococcus
sp. PCC 7335]
gi|196189651|gb|EDX84615.1| ribosome small subunit-dependent GTPase A, putative [Synechococcus
sp. PCC 7335]
Length = 375
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 203/337 (60%), Gaps = 29/337 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC+ R LLKK+ ++++VGD+V V DW RRG I +V R T + PP+ANVD +LL+
Sbjct: 43 LLCIRRGLLKKLGQQIMVGDRVTVEEPDWQGRRGAIASVHPRQTFLDRPPIANVDRVLLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+ + L+RFL++AE TG+ +TL LNK +LV + W+ RL WGY PL S
Sbjct: 103 FAIAEPNLDIYQLSRFLIKAELTGLGITLCLNKCDLVSRDTKVRWQKRLLEWGYMPLMVS 162
Query: 144 VESKLGL-DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ L +LL L Q TV+ GPSGVGKSSL N L +
Sbjct: 163 ILDVAELPAALLTVLEGQITVLAGPSGVGKSSLTNRLIPA-------------------- 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ RV VS K G+HTTRHV L L GGYLADTPGFNQP ++ T ++L FPE
Sbjct: 203 --QNLRVNAVSGKLSLGRHTTRHVELYELPKGGYLADTPGFNQPDIV-TTAEALGSLFPE 259
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L C F+NCLH EPGCVV+G+WERY++Y LL+E+ +++ L +
Sbjct: 260 IRQRLTNQH---CQFSNCLHRDEPGCVVRGEWERYEHYLLLLEEVTKQQQALLHK--GEA 314
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
E + K+ + G EP+LE KK+RR SRK NQ+
Sbjct: 315 ETTEKVKMVEDGKILHEPKLEAKKYRRISRKTRNQAF 351
>gi|282897943|ref|ZP_06305938.1| GTPase EngC [Raphidiopsis brookii D9]
gi|281197087|gb|EFA71988.1| GTPase EngC [Raphidiopsis brookii D9]
Length = 352
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/333 (43%), Positives = 196/333 (58%), Gaps = 34/333 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW+ RG I +V R TE+ P +ANV+ +LL+
Sbjct: 36 LLCTRRTRLKKIGQQVMVGDQVLVEEPDWMGGRGAIADVLPRKTELDRPAIANVNQILLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++ ESTGI L L LNK +L+ E RL +WGY+P+F S
Sbjct: 96 FALADPPLEPVQLSRFLIKGESTGIDLRLCLNKCDLIQENERRAISDRLGSWGYKPIFLS 155
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + ++ + L+++ TVI GPSGVGKSSLIN L P
Sbjct: 156 VQEGMNIEEAREYLKNKITVIAGPSGVGKSSLINQL--IPQG------------------ 195
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVG+VS K RG+HTTRHV L L GG LADTPGFNQP L + + L FPE
Sbjct: 196 --NLRVGKVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-LGFSPEELIYYFPEG 252
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR- 322
++ L E C F++CLH EPGC+V DWERY+YY + L +E +T ++
Sbjct: 253 RKFL---EQGSCRFSDCLHRDEPGCIVNNDWERYEYYLEFL-----QEAIAYQTLCQQKS 304
Query: 323 --EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
E ++ K G EP+LE KK+RR SR+
Sbjct: 305 DPESTLKLKTKGQGENHYEPKLESKKYRRTSRR 337
>gi|423062151|ref|ZP_17050941.1| GTPase EngC [Arthrospira platensis C1]
gi|406716059|gb|EKD11210.1| GTPase EngC [Arthrospira platensis C1]
Length = 492
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 213/406 (52%), Gaps = 75/406 (18%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 114 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 173
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 174 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLRQWY 233
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 234 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 293
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 294 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 336
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 337 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 390
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L KC F++CLH EP CVV+GDWERY Y L+E E ++
Sbjct: 391 IRDRLTK---GKCQFDDCLHREEPSCVVRGDWERYPQYLHFLEE--AIEAWETSQHQPLE 445
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E ++ K G +Q EP+L+ KK+RR SR+ +Q++ ++LD+
Sbjct: 446 EDRLKSKSKSGGGKQYEPKLQSKKYRRSSRRLEHQNLQQLCEDLDE 491
>gi|282899272|ref|ZP_06307243.1| GTPase EngC [Cylindrospermopsis raciborskii CS-505]
gi|281195841|gb|EFA70767.1| GTPase EngC [Cylindrospermopsis raciborskii CS-505]
Length = 352
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 194/330 (58%), Gaps = 28/330 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW+ RG I +V R TE+ P +ANV+ +LL+
Sbjct: 36 LLCTRRTRLKKIGQQVMVGDQVLVEEPDWMGGRGAIADVLPRKTELDRPAIANVNQILLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++ ESTGI L L LNK +L+ E+ RL +WGY+P+F S
Sbjct: 96 FALADPPLEPVQLSRFLIKGESTGIDLRLCLNKCDLIKEDERRAISDRLESWGYKPIFLS 155
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + ++ + L+++ TVI GPSGVGKSSLIN L P
Sbjct: 156 VQEGMNIEEAREYLKNKITVIAGPSGVGKSSLINQL--IPQG------------------ 195
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVG+VS K RG+HTTRHV L L GG LADTPGFNQP L + L FPE
Sbjct: 196 --NLRVGKVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-LGFAPEELIYYFPEG 252
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L E C F++CLH EPGC+V DWERY+YY + L E + + + E
Sbjct: 253 RKFL---EKGSCRFSDCLHRDEPGCIVNNDWERYEYYLEFLQEAIAYQTICQQQ--SDPE 307
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
++ K G EP+LE KK+RR SR+
Sbjct: 308 STLKLKTKGQGENHYEPKLESKKYRRVSRR 337
>gi|428772027|ref|YP_007163815.1| ribosome small subunit-dependent GTPase A [Cyanobacterium stanieri
PCC 7202]
gi|428686306|gb|AFZ46166.1| ribosome small subunit-dependent GTPase A [Cyanobacterium stanieri
PCC 7202]
Length = 349
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/356 (43%), Positives = 212/356 (59%), Gaps = 34/356 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC LKKI + VLVGD++ V S ++ RG I +V R TE+ PP+AN D +
Sbjct: 26 GQTLLCTRPTRLKKIGQNVLVGDRIYVKSTEF--ERGAIASVTPRKTELQRPPIANADQI 83
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++++P L+P L+RFLV+AEST + L L LNK +L+ +E W+ +L WGYEP
Sbjct: 84 LLVFALEEPTLDPVQLSRFLVKAESTNLKLLLGLNKADLITQEKQKEWEEKLKLWGYEPY 143
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE+ G++ + L+++ T+ GPSGVGKSSL + L P L
Sbjct: 144 FFSVENNQGIEEIKTALKNKITIFAGPSGVGKSSLTSLLI----------------PQL- 186
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
D R+GEVS K +G+HTTRHV L + GGY+AD+PGFNQP Q+L F
Sbjct: 187 -----DIRIGEVSGKLQKGRHTTRHVELFEMPQGGYIADSPGFNQPDF-DCNSQNLINYF 240
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGT 320
PE + L +C FN+CLH EP C+VKG+WERY+YY + LDEI +EE +T T
Sbjct: 241 PEARHRLSQ---GQCKFNDCLHQEEPECIVKGEWERYEYYLRFLDEILAQEEKIAQTRDT 297
Query: 321 KREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEID 376
E V+ V D G EP+L KK+RR SR+ +Q +L+EL D + +E D
Sbjct: 298 --ESSVKKMVKDSGKVYTEPKLNTKKYRRVSRRLSHQ----KLEELYDHQSLEEED 347
>gi|209525539|ref|ZP_03274078.1| GTPase EngC [Arthrospira maxima CS-328]
gi|209494038|gb|EDZ94354.1| GTPase EngC [Arthrospira maxima CS-328]
Length = 406
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 213/406 (52%), Gaps = 75/406 (18%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 28 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 87
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 88 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLRQWY 147
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 148 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 207
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 208 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 250
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 251 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 304
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L KC F++CLH EP CVV+GDWERY Y L+E E ++
Sbjct: 305 IRDRLTK---GKCQFDDCLHREEPSCVVRGDWERYPQYLHFLEE--AIEAWETSQHQPLE 359
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E ++ K G +Q EP+L+ KK+RR SR+ +Q++ ++LD+
Sbjct: 360 EDRLKSKSKSGGGKQYEPKLQSKKYRRSSRRLEHQNLQQLCEDLDE 405
>gi|376001961|ref|ZP_09779814.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]
gi|375329672|emb|CCE15567.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]
Length = 400
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 213/406 (52%), Gaps = 75/406 (18%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 22 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 81
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 82 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLREWY 141
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 142 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 201
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 202 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 244
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 245 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 298
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L KC F++CLH EP CVV+GDWERY Y L+E E ++
Sbjct: 299 IRDRLTK---GKCQFDDCLHREEPSCVVRGDWERYPQYLHFLEE--AIEAWETSQHQPLE 353
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E ++ K G +Q EP+L+ KK+RR SR+ +Q++ ++LD+
Sbjct: 354 EDRLKSKSKSGGGKQYEPKLQSKKYRRSSRRLEHQNLQQLCEDLDE 399
>gi|56752026|ref|YP_172727.1| ribosome-associated GTPase [Synechococcus elongatus PCC 6301]
gi|56686985|dbj|BAD80207.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 350
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/347 (44%), Positives = 213/347 (61%), Gaps = 28/347 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L K +RV+VGD+V V DW +RG I +V RS+E+ P +ANVD +LL+
Sbjct: 32 LLCTRRTRLLKTGQRVMVGDRVWVEEPDWQGQRGAIASVEPRSSELDRPAIANVDQILLV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P+LEP LTRFLV AESTGIP+ L L+K +LV + W+ RL WGY+PL+ S
Sbjct: 92 FAVAEPELEPLQLTRFLVTAESTGIPVQLCLSKCDLVTAGAIAAWQERLAQWGYQPLWLS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
LL++L + TV+ GPSGVGKSSLIN L P L
Sbjct: 152 QNQPERWPLLLKQLIGRMTVVAGPSGVGKSSLINRLI----------------PDL---- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ R +VS K GRG+HTTRHV L L GG LAD+PGFNQP L+ + + LAQ FPEI
Sbjct: 192 --ELRTAKVSGKLGRGRHTTRHVELFELPQGGLLADSPGFNQPELI-CSDRELAQYFPEI 248
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L A+ +C F++C HL EPGC ++GDWERY +Y LL+E + + Q R+ T+ +
Sbjct: 249 RQRLAAD---RCQFHDCRHLEEPGCSIRGDWERYSHYQDLLEEAIAQTQQQNRS--TQED 303
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDD 370
+ K D G + EP+L+ +++RR SR+ +QS+ + L + +D
Sbjct: 304 AGSKRKSADGGKLRYEPKLQSRRYRRDSRRSQHQSVAEALHNAELED 350
>gi|409994002|ref|ZP_11277125.1| GTPase RsgA [Arthrospira platensis str. Paraca]
gi|291567081|dbj|BAI89353.1| putative ribosome biogenesis GTPase RsgA [Arthrospira platensis
NIES-39]
gi|409935149|gb|EKN76690.1| GTPase RsgA [Arthrospira platensis str. Paraca]
Length = 406
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 212/406 (52%), Gaps = 75/406 (18%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW G+I + R TE+
Sbjct: 28 PSGNGAGGEAKPITLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGTGVISEILPRKTEL 87
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 88 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLREWY 147
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 148 DRMRGWGYDPLMISVYHGVEYRFEGDRMEISPTLNLSSNSAGLDKPGFGESSPSLTRDGD 207
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 208 RNLVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 250
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 251 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 304
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L KC F++CLH EP CVV+GDWERY Y L+E E ++
Sbjct: 305 IRDRLTK---GKCQFDDCLHREEPSCVVRGDWERYPQYLHFLEE--AIEAWETSQHQPLE 359
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
E ++ K G +Q EP+L+ KK+RR SR+ +Q++ ++LD+
Sbjct: 360 EDRLKSKSKSGGGKQYEPKLQSKKYRRSSRRLEHQNLQQLCEDLDE 405
>gi|81300885|ref|YP_401093.1| ribosome-associated GTPase [Synechococcus elongatus PCC 7942]
gi|81169766|gb|ABB58106.1| GTPase EngC [Synechococcus elongatus PCC 7942]
Length = 350
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/347 (44%), Positives = 213/347 (61%), Gaps = 28/347 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L K +RV+VGD+V V DW +RG I +V RS+E+ P +ANVD +LL+
Sbjct: 32 LLCTRRTRLLKTGQRVMVGDRVWVEEPDWQGQRGAIASVEPRSSELDRPAIANVDQILLV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P+LEP LTRFLV AESTGIP+ L L+K +LV + W+ RL WGY+PL+ S
Sbjct: 92 FAVAEPELEPLQLTRFLVTAESTGIPVQLCLSKCDLVTAGAIAAWQERLAQWGYQPLWLS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
LL++L + TV+ GPSGVGKSSLIN L P L
Sbjct: 152 QNQPERWPLLLKQLIGRMTVVAGPSGVGKSSLINRLI----------------PDL---- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ R +VS K GRG+HTTRHV L L GG LAD+PGFNQP L+ + + LAQ FPEI
Sbjct: 192 --ELRTAKVSGKLGRGRHTTRHVELFELPQGGLLADSPGFNQPELI-CSDRELAQYFPEI 248
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L A+ +C F++C HL EPGC ++GDWERY +Y LL+E + + Q R+ T+ +
Sbjct: 249 RQRLAAD---RCQFHDCRHLEEPGCSIRGDWERYSHYQDLLEEAIAQTQQQNRS--TQED 303
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDD 370
+ K D G + EP+L+ +++RR SR+ +QS+ + L + +D
Sbjct: 304 VGFKRKSADGGKLRYEPKLQSRRYRRDSRRSQHQSVAEALHNAELED 350
>gi|428298493|ref|YP_007136799.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 6303]
gi|428235037|gb|AFZ00827.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 6303]
Length = 359
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 203/357 (56%), Gaps = 32/357 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
ND LLC R LKKI ++V+VGD+V+V DW G I V RS+ + P +AN
Sbjct: 35 NDTVATTLLCTRRTRLKKIGQQVMVGDRVIVEEPDWTGNSGAIAEVLPRSSTLDRPAIAN 94
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V+ +LL+F++ P LEP+ L+RFL +AEST + + L NK +L+ + + R+ WG
Sbjct: 95 VNQILLVFAVADPPLEPYQLSRFLTKAESTYVDVKLCFNKCDLISSDEQSEIAERIGNWG 154
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+P+F SV + L SL + L +TTV+ G SGVGKSSLIN L + H
Sbjct: 155 YKPIFFSVYKSINLLSLAECLNGKTTVLAGASGVGKSSLINTLIPNAHL----------- 203
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L + L
Sbjct: 204 -----------RVGEVSGKLSRGRHTTRHVELFELPNGGLLADTPGFNQPD-LDCLPEEL 251
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLR 316
FPE + L + C F +CLH EP CVV+GDWERY++Y + ++E +R+ +
Sbjct: 252 IHYFPEARVRLAS---GNCRFGDCLHRDEPDCVVRGDWERYEHYLEFVEEAMLRQTHLHQ 308
Query: 317 TFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDD 373
T E ++ K G + EP+L+ KK+R++SR+ + L EL ++ D+ +D
Sbjct: 309 Q--TDPESTLKVKNTGKGESRYEPKLDSKKYRQKSRR----TQLQELQQIYDEGEED 359
>gi|334120859|ref|ZP_08494936.1| ribosome biogenesis GTPase RsgA [Microcoleus vaginatus FGP-2]
gi|333455858|gb|EGK84498.1| ribosome biogenesis GTPase RsgA [Microcoleus vaginatus FGP-2]
Length = 416
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 207/385 (53%), Gaps = 52/385 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW +RRG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVDEPDWTERRGAISEVFPRQTELNRPPVANADRILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P +LTRFLV+AESTG+ ++L LNK +LV + L W+ RL WGYEP+F S
Sbjct: 103 FALAEPDLDPASLTRFLVKAESTGLEVSLCLNKCDLVTPQELEQWRDRLSGWGYEPMFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGP-------------SGVGKSSLINALR---------- 180
V S G+ +++ + P S L N+L+
Sbjct: 163 VRSGAGVQEAPATGQNEVSASEPPFHDLVENREPSMLSSEDNPQLPNSLKPLHPLNPVHS 222
Query: 181 -----------------SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
P + + N P L + RV VS K GRG+HTT
Sbjct: 223 PLPNLLLDHLQGKITVICGPSGVGKSSLINQLIPAL------NLRVNTVSGKLGRGRHTT 276
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
RHV L L GGG LADTPGFNQP+ L+ L + FPE ++ L C F++C H
Sbjct: 277 RHVELFELPGGGLLADTPGFNQPA-LECDPSELGEYFPEARQRLAL---GSCQFSDCSHR 332
Query: 284 GEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLE 343
EP CVV+G WERY+YY Q L+E +R+ Q + E ++ + G Q EP+L+
Sbjct: 333 DEPNCVVRGAWERYEYYLQFLEEAIVRQ--QALQNSSSAESSLKQQTKSDGTQHYEPKLQ 390
Query: 344 PKKHRRQSRKRINQSILDELDELDD 368
KK+RR SR+ +QS+ D +L++
Sbjct: 391 TKKYRRSSRRLQHQSLQDMCQDLEE 415
>gi|428770568|ref|YP_007162358.1| ribosome biogenesis GTPase RsgA [Cyanobacterium aponinum PCC 10605]
gi|428684847|gb|AFZ54314.1| ribosome biogenesis GTPase RsgA [Cyanobacterium aponinum PCC 10605]
Length = 357
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 202/350 (57%), Gaps = 34/350 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC LKKI + V VGD+V+V S ++ RG I +V R TE+ PP+AN +LL+
Sbjct: 37 LLCTRPTRLKKIGQSVFVGDRVLVKSTEF--ERGAIASVLPRETELERPPIANAQQILLV 94
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P L+RFLV+AEST + L L LNKV+L+ E W+ RL WGYEP F S
Sbjct: 95 FALEEPTLDPVQLSRFLVKAESTKLKLLLGLNKVDLICPEKQKAWQERLCAWGYEPYFFS 154
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ G+ SL + L ++ T++ GPSGVGKSSL + L
Sbjct: 155 VQTSQGVPSLQKVLANKITILAGPSGVGKSSLTSLLIPEIEV------------------ 196
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVGEVS K +G+HTTRHV L L GGY+AD+PGFNQP + +SL FPE
Sbjct: 197 ----RVGEVSGKLQKGRHTTRHVELFELPSGGYIADSPGFNQPH-FDFSVESLVNYFPEA 251
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTK-R 322
+ L N C F+NC+H EP C VKGDWERY YY + L+E FQ T K
Sbjct: 252 RARLAEN---TCKFHNCIHKDEPDCAVKGDWERYPYYLKFLEEAIA---FQEATAHKKDE 305
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD--ELDELDDDD 370
E V+ K G + EP+LE KK+RR SRK NQ + D L LD D+
Sbjct: 306 ESTVKTKFKANGKKYTEPKLESKKYRRVSRKVSNQKLEDLYNLQNLDSDE 355
>gi|298491004|ref|YP_003721181.1| ribosome small subunit-dependent GTPase A ['Nostoc azollae' 0708]
gi|298232922|gb|ADI64058.1| ribosome small subunit-dependent GTPase A ['Nostoc azollae' 0708]
Length = 370
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 201/345 (58%), Gaps = 28/345 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I V R +E+ P +ANV +LL+
Sbjct: 54 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWAGGRGAIAEVLPRQSELDRPAIANVHQILLV 113
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +L+ + L WGY+PLF S
Sbjct: 114 FAVADPPLEPVQLSRFLIKAESTGVDVLLCLNKCDLISPQEQQEISDHLFAWGYKPLFIS 173
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++++ + + + L ++ TVI GPSGVGKSSLIN L DV
Sbjct: 174 VQNEINIHQVDEYLSNKVTVIAGPSGVGKSSLINGL--------IPDV------------ 213
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + + L FPE
Sbjct: 214 --NLRVGEVSGKLARGRHTTRHVELFEMRSGGLLADTPGFNQPD-LDSSPEELIYYFPEA 270
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L E A C F++CLH EP C V DWERY++Y + LD++ + + + E
Sbjct: 271 RKRL---EVASCRFSDCLHRDEPDCAVGSDWERYEHYLEFLDDMIAYQNYLKQQ--ADPE 325
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
++ K G Q EP+LE KK+RR SR+ Q++ D E ++
Sbjct: 326 STLKLKSKGKGQNQYEPKLESKKYRRVSRRVQVQNLQDLYTETEE 370
>gi|284928751|ref|YP_003421273.1| ribosome small subunit-dependent GTPase A [cyanobacterium UCYN-A]
gi|284809210|gb|ADB94915.1| ribosome small subunit-dependent GTPase A [cyanobacterium UCYN-A]
Length = 363
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 196/336 (58%), Gaps = 28/336 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI + V+VGD+V++ D RG+I +V R TE+ P VAN D +LLL
Sbjct: 46 LLCTRRERLKKIGQNVMVGDRVIIKKSSLQDLRGLIISVLPRKTELSRPKVANADQILLL 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F +P+LEP+ L+RFL++AEST IPL L LNK +L+ + WK RL WGY P S
Sbjct: 106 FPFKEPELEPWQLSRFLIKAESTLIPLVLCLNKADLIKPDEQKKWKMRLKKWGYTPHLIS 165
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + G+ L L+++ T+ GPSG GKSSLIN L V N
Sbjct: 166 ILNIQGIQELYDCLQNKITIFAGPSGAGKSSLINKL-----------VPNI--------- 205
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+QRV +VS K +G+HTTRHV L L GG +ADTPGFNQ L+ + L FPE+
Sbjct: 206 --EQRVDKVSGKLRKGRHTTRHVELFRLPKGGLVADTPGFNQAD-LQCDPRKLINYFPEV 262
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
+ LK E C FNNCLH EP C++ WERY++Y +L E+ ++E + + +E
Sbjct: 263 RSQLKQGE---CQFNNCLHRSEPNCIISKSWERYEHYLTILAEMLSQKEVEQKK--KVQE 317
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
++ K+ G + EP+LE KK+RR SR+ NQ +
Sbjct: 318 STLKLKIKAFGKEVYEPKLEIKKYRRYSRQDKNQRL 353
>gi|440683833|ref|YP_007158628.1| ribosome biogenesis GTPase RsgA [Anabaena cylindrica PCC 7122]
gi|428680952|gb|AFZ59718.1| ribosome biogenesis GTPase RsgA [Anabaena cylindrica PCC 7122]
Length = 374
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/343 (42%), Positives = 198/343 (57%), Gaps = 32/343 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I +V R +E+ P +ANV+ +LL+
Sbjct: 58 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWSGGRGAIGDVLPRHSELDRPAIANVNQILLV 117
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +L+ RL WGY+PLF S
Sbjct: 118 FAVADPPLEPVQLSRFLIKAESTGVDVLLCLNKCDLISPLEKQQISDRLLAWGYQPLFIS 177
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++++ +D + L ++ TVI GPSGVGKSSLIN L D++
Sbjct: 178 VQNQINIDHIANYLNNKITVIAGPSGVGKSSLINGL--------IPDIN----------- 218
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + + L FPE
Sbjct: 219 ---LRVGEVSGKLARGRHTTRHVELFEMPSGGLLADTPGFNQPDL-DCSPEELIYYFPEA 274
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKRE 323
++ L E A C F++C H EP C V DWERY +Y + L + R+ + E
Sbjct: 275 RKQL---EIASCRFSDCTHRDEPDCAVGKDWERYTHYLEFLGDAIARQTHLKQQ--ADPE 329
Query: 324 GDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDEL 366
++ K G Q EP+LE KK+RR SRK + L +L EL
Sbjct: 330 SSLKLKSKGKGQSQYEPKLESKKYRRISRK----TQLQDLQEL 368
>gi|443479211|ref|ZP_21068838.1| ribosome biogenesis GTPase RsgA [Pseudanabaena biceps PCC 7429]
gi|443015315|gb|ELS30326.1| ribosome biogenesis GTPase RsgA [Pseudanabaena biceps PCC 7429]
Length = 357
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 185/323 (57%), Gaps = 32/323 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC RA LKKI +++ VGD+V+V DW RRG I +V R + P VANVD +LL
Sbjct: 42 ELLCTRRARLKKIGQQICVGDRVIVEEPDWQGRRGAISDVSIRRNLLDRPTVANVDRILL 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+FS+ +P L+P L+RFLV+AEST + + L LNK +LV +++ W+ RL +WGYE +
Sbjct: 102 VFSLAEPSLDPHQLSRFLVKAESTQVEVLLCLNKRDLVSDQMWELWRDRLQSWGYEAIAI 161
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G+D L L+ TV+ G SGVGKSSLIN L
Sbjct: 162 STYTQQGIDQLATYLQTGVTVVAGLSGVGKSSLINLLIPDLQV----------------- 204
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + G G+HTTRHV L L GGYLADTPGF QP+ L VT LA FPE
Sbjct: 205 -----RVGVVSQRLGHGRHTTRHVELFALPAGGYLADTPGFMQPN-LTVTPPELADCFPE 258
Query: 263 IKEMLKANEPAKCSFNNCLH-LGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTK 321
++ L + C F+NCLH L EP CVV+GDWERY YY L+E ++
Sbjct: 259 ARQKLASGN--HCHFHNCLHRLDEPDCVVRGDWERYDYYCAYLEEAITYQQ----KLKNT 312
Query: 322 REGDVRYKVGDM--GVQQAEPRL 342
D K+ D G QQ EPRL
Sbjct: 313 ANADASLKIKDTSEGKQQQEPRL 335
>gi|434386936|ref|YP_007097547.1| ribosome small subunit-dependent GTPase A [Chamaesiphon minutus PCC
6605]
gi|428017926|gb|AFY94020.1| ribosome small subunit-dependent GTPase A [Chamaesiphon minutus PCC
6605]
Length = 358
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 204/351 (58%), Gaps = 34/351 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G +LC RA L+KI +VGD+V + +DW +G++ +VF R + + PPVAN D +
Sbjct: 40 GKLILCTRRARLQKIGVSAIVGDRVTIDEVDWQSAKGVVTDVFPRHSLLDRPPVANADRI 99
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+ F L++FLV+AESTG+ ++L LNK +LV + W RL WGY+P+
Sbjct: 100 LLVFALAEPALDSFLLSKFLVKAESTGLQVSLCLNKSDLVTDMQRQEWCDRLSNWGYQPI 159
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
SVE+ +G+ L L Q TV G SGVGKSSL NAL
Sbjct: 160 VISVETGVGVKELQIELDRQITVFAGHSGVGKSSLTNALIPD------------------ 201
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ RV VS K RG+HTTRHV L + GG +ADTPGFNQP + T L + F
Sbjct: 202 ----SNIRVARVSGKLSRGRHTTRHVQLFTMPTGGLIADTPGFNQPD-IACTPTELPRYF 256
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLL-DEIRIREEFQLRTFG 319
PEI++ L A C F++C H EP CVV+GDWERY +Y L D I ++ Q +
Sbjct: 257 PEIRQRLAI---AHCQFSDCTHRDEPNCVVRGDWERYAHYLDFLADSIAWEQQLQSQ--- 310
Query: 320 TKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDEL-DELDDD 369
K E ++ K G G +Q EP+L+ K+R+ SR + QS LDEL +ELD D
Sbjct: 311 PKLESSLKQKSGS-GKKQYEPKLD-SKYRQISRHTLIQS-LDELAEELDVD 358
>gi|428317432|ref|YP_007115314.1| ribosome biogenesis GTPase RsgA [Oscillatoria nigro-viridis PCC
7112]
gi|428241112|gb|AFZ06898.1| ribosome biogenesis GTPase RsgA [Oscillatoria nigro-viridis PCC
7112]
Length = 416
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 207/383 (54%), Gaps = 48/383 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW DRRG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVDEPDWTDRRGAISEVFPRQTELNRPPVANADRILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P +LTRFLV+AESTG+ ++L LNK +LV L W+ RL WGYEP+F S
Sbjct: 103 FALAEPDLDPASLTRFLVKAESTGLEVSLCLNKCDLVTPHELEQWRDRLSGWGYEPMFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS-DAADVDNWFEPI---- 198
V S +G +++ V S L+ + +S D V N +P+
Sbjct: 163 VRSSVGFQEAAANGQNE----VSASEPAFHDLVEKIEPYKLSSEDNPQVSNSVKPLHPLK 218
Query: 199 --------------------------LGSKWFEDQ-------RVGEVSTKSGRGKHTTRH 225
+G +Q RV VS K GRG+HTTRH
Sbjct: 219 PVPSPLPNFLLGHLQGKITVICGPSGVGKSSLINQLIPALNLRVNAVSGKLGRGRHTTRH 278
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285
V L L GGG LADTPGFNQP+ L+ LA FPE ++ L C F++C H E
Sbjct: 279 VELFELPGGGLLADTPGFNQPA-LECDPSELAAYFPEARQRLAL---GSCQFSDCSHRDE 334
Query: 286 PGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPK 345
P CVV+G WERY YY L+E R++ Q + + E ++ + G Q EP+L+ K
Sbjct: 335 PNCVVRGGWERYDYYLNFLEEAIARQQQQQNS--SSAESSLKQQTKSDGTQHYEPKLQTK 392
Query: 346 KHRRQSRKRINQSILDELDELDD 368
K+RR SR+ +QS+ D +L++
Sbjct: 393 KYRRSSRRLQHQSLQDMCQDLEE 415
>gi|434391160|ref|YP_007126107.1| ribosome biogenesis GTPase RsgA [Gloeocapsa sp. PCC 7428]
gi|428263001|gb|AFZ28947.1| ribosome biogenesis GTPase RsgA [Gloeocapsa sp. PCC 7428]
Length = 362
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 195/337 (57%), Gaps = 32/337 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKK+ ++V+VGD+V + DW RG I V R +++ PP+AN + +LL+
Sbjct: 47 LLCTRRARLKKLGQQVMVGDRVEIVEPDWAGGRGAIAGVLPRKSQLDRPPIANAEQILLV 106
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P LEP+ L+RFLV+AESTG+ + L NK +L+ E W+ RL WGY+P+ S
Sbjct: 107 FALAEPPLEPYQLSRFLVKAESTGLGVRLCFNKSDLLTLEQQQQWRDRLQQWGYQPVLIS 166
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ +G+ + L+ + + + GPSGVGKSSLINAL + H
Sbjct: 167 IRDGIGISEVRDLLKLRISAVAGPSGVGKSSLINALIPTVHL------------------ 208
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
R EVS K RG+HTTRHV L L GG LADTPGFNQP L LA FPEI
Sbjct: 209 ----RTNEVSGKLSRGRHTTRHVELFTLPDGGLLADTPGFNQPD-LTCYPHELANYFPEI 263
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEFQLRTFGTKR 322
++ L C F++CLH EP C V+GDWERY++Y L+E I +E +
Sbjct: 264 RQRLVQQ---SCQFSDCLHRDEPNCAVRGDWERYEHYLAFLEEAIAYQEHINQQ---ADP 317
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSI 359
E ++ K G +Q EP+L+ K+R+ SR+ +Q++
Sbjct: 318 ESSLKLKT-KRGKRQYEPKLD-TKYRQHSRRTQHQAL 352
>gi|303291105|ref|XP_003064839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453865|gb|EEH51173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 330
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/338 (45%), Positives = 192/338 (56%), Gaps = 29/338 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLCVVRALLKKIK+RVLVGD V V +IDWVD R ++E+V RS+ +LDPPVANVDH LL+
Sbjct: 1 LLCVVRALLKKIKQRVLVGDGVDVNTIDWVDGRAVVEHVHARSSTLLDPPVANVDHALLV 60
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P LEP LTRFLV E T +P TL LNK +LV E W +RL E
Sbjct: 61 FALERPPLEPKQLTRFLVSMEHTNVPFTLVLNKCDLVSAEARADWDARLEQAQEEEEGGG 120
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G ++ L + TV+ GPSGVGKSSLIN LR+ ++A
Sbjct: 121 GGDEEGTNA--GDLNEGVTVLAGPSGVGKSSLINRLRAGSALAEALAAAG---------- 168
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ GKHTTRHV+LLPL GG LADTPGF PSL +T +L + FPE
Sbjct: 169 --------AMGGADGGKHTTRHVTLLPLRSGGLLADTPGFGYPSLQTLTPTTLGRCFPEA 220
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGD--WE--RYQYYFQLLDEIRIREEFQLRTFG 319
+ + +C F +C H EPGC V + WE RY Y L DE E+ Q R G
Sbjct: 221 R---STSSHCRCKFADCTHRDEPGCAVDAEEPWEEGRYDAYVDLFDECEAIEK-QERERG 276
Query: 320 TKREGDVRYKVGDM-GVQQAEPRLEPKKHRRQSRKRIN 356
RE V + G G + E +LE K HRRQSR+ N
Sbjct: 277 YARESTVSLRGGQSPGAMRMEAKLETKSHRRQSRRARN 314
>gi|302830077|ref|XP_002946605.1| hypothetical protein VOLCADRAFT_43862 [Volvox carteri f.
nagariensis]
gi|300268351|gb|EFJ52532.1| hypothetical protein VOLCADRAFT_43862 [Volvox carteri f.
nagariensis]
Length = 330
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 206/340 (60%), Gaps = 20/340 (5%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V SIDW + RG++ V RS+ ++DP VANVDH+LL+
Sbjct: 1 LLCSIRSLLRKLRQDVVVGDVVRVSSIDWREGRGVVSEVLPRSSRLVDPNVANVDHVLLV 60
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++DQP E ++RFLV AE+ G+P +L LNK +LV EV+ ++ +WGYEPL S
Sbjct: 61 FALDQPPFEELQVSRFLVAAEAAGLPFSLVLNKADLVGREVVEKRVAQCRSWGYEPLVLS 120
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD------AADVDNWFEP 197
E G+++ + +V+ GPSG GKSSLIN LR H +
Sbjct: 121 CEGGWGVEA------GRISVVAGPSGAGKSSLINFLRLGRHRPEQRIDAATGTPATAAAA 174
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
G VG VS K GRG HTT V+LL L+GGG+LADTPGF QP+L ++ L+
Sbjct: 175 EGGEGGLGFLAVGSVS-KIGRGMHTTTSVTLLQLAGGGWLADTPGFGQPALEDLSSTDLS 233
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-KGDWERYQYYFQLLDEIRIREEF--- 313
+ FPE+ + A+ C F +CLHL EPGC V RY +Y + L EI++RE
Sbjct: 234 RYFPELLALTAAS---PCRFADCLHLSEPGCSVGAAGLARYPHYRRFLQEIKMRESCDVR 290
Query: 314 QLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
QL+ +REG + K G ++ E RL+P++HRRQSR+
Sbjct: 291 QLQRGKAEREGVTKTKSVRGGGERQEIRLDPRRHRRQSRQ 330
>gi|334183717|ref|NP_176913.3| Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis
thaliana]
gi|332196528|gb|AEE34649.1| Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis
thaliana]
Length = 299
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ P + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDV-PESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SS 182
SS
Sbjct: 270 SS 271
>gi|55978769|gb|AAV68846.1| hypothetical protein AT1G67460 [Arabidopsis thaliana]
Length = 294
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ P + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDV-PESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SS 182
SS
Sbjct: 270 SS 271
>gi|16332059|ref|NP_442787.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|383323802|ref|YP_005384656.1| hypothetical protein SYNGTI_2894 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326971|ref|YP_005387825.1| hypothetical protein SYNPCCP_2893 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492855|ref|YP_005410532.1| hypothetical protein SYNPCCN_2893 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384438123|ref|YP_005652848.1| hypothetical protein SYNGTS_2895 [Synechocystis sp. PCC 6803]
gi|451816211|ref|YP_007452663.1| hypothetical protein MYO_129230 [Synechocystis sp. PCC 6803]
gi|1723178|sp|P52640.1|RSGA_SYNY3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|1001369|dbj|BAA10858.1| sll0898 [Synechocystis sp. PCC 6803]
gi|339275156|dbj|BAK51643.1| hypothetical protein SYNGTS_2895 [Synechocystis sp. PCC 6803]
gi|359273122|dbj|BAL30641.1| hypothetical protein SYNGTI_2894 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359276292|dbj|BAL33810.1| hypothetical protein SYNPCCN_2893 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359279462|dbj|BAL36979.1| hypothetical protein SYNPCCP_2893 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960303|dbj|BAM53543.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|451782180|gb|AGF53149.1| hypothetical protein MYO_129230 [Synechocystis sp. PCC 6803]
Length = 369
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 204/369 (55%), Gaps = 49/369 (13%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQL 303
NQP L V L FPE ++ L E C F +CLH GEP C V DWERY++Y
Sbjct: 244 NQPD-LAVEPAQLIHLFPEARQQLTGQE---CFFKDCLHRGEPDCAVGQDWERYEHYLTF 299
Query: 304 LDEIRIREEFQLRTFGTKREGD--VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD 361
L+E+ ++ + RE D ++ K G G + EP+LE KK+RR SR++ +Q +
Sbjct: 300 LEEVLAQQNPE-----NSRETDTGLKTKTGSDGQEYDEPKLETKKYRRHSRRQEHQELQS 354
Query: 362 ELDELDDDD 370
++ D D+
Sbjct: 355 FCEQTDLDN 363
>gi|428219078|ref|YP_007103543.1| ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367]
gi|427990860|gb|AFY71115.1| ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367]
Length = 386
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 189/354 (53%), Gaps = 56/354 (15%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ELLC+ R+ LKKI +RV VGD+VVV S DW +RG I V R + PP+ANVD L
Sbjct: 38 LELLCIRRSRLKKIGQRVCVGDRVVVESPDWQGQRGAIGQVLSRRNLLARPPIANVDRAL 97
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+F++ P+ + + L+RFLV E+ G+ + LALNK +LV E TW RL +WGY P+
Sbjct: 98 LMFALSDPEPDAYQLSRFLVNIEAQGLEICLALNKSDLVSPEFTQTWCDRLKSWGYAPIV 157
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + ++ L + L TV+ GPSGVGKSSLIN L P L
Sbjct: 158 ISTSQQTNIEQLRRSLTQGITVVSGPSGVGKSSLINLLI----------------PDL-- 199
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLL---------------------------PL-SG 233
+ R +VS +SG G+HTTRHV L PL
Sbjct: 200 ----ELRTAQVSARSGHGRHTTRHVELFDLNDCNHNLNLNLNLTPANPNHSHRDQPLPQQ 255
Query: 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293
+ADTPGF QP++ + Q LA FPEI+ L + A C FN+CLH EPGCVV+GD
Sbjct: 256 PSLIADTPGFTQPAIACSSIQ-LANCFPEIRAKL---DHAPCQFNDCLHQAEPGCVVRGD 311
Query: 294 WERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKH 347
WERY +Y LL EI +E Q + ++ G G Q EPRL+ KK+
Sbjct: 312 WERYDHYCLLLAEILTQEAKQQAI--ANPDQSIKEMSGVGGQAQTEPRLQQKKY 363
>gi|427711698|ref|YP_007060322.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
6312]
gi|427375827|gb|AFY59779.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
6312]
Length = 344
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 188/343 (54%), Gaps = 38/343 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC+ R LKK ++VLVGD+VV+ DW +RGMI+ V R + P +ANV+ +LL
Sbjct: 38 QLLCLRRGKLKKQGQQVLVGDQVVISEPDWQSQRGMIDQVLPRDCALTRPAIANVNQILL 97
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLF 141
+F++ P+ +P+ ++RFLV AE++G+ +T+ L+K +LVD + W RL+ WGY E +
Sbjct: 98 VFALHDPEPDPWQVSRFLVTAEASGLEITVVLSKADLVDGAIHQAWIQRLNRWGYQEVIL 157
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S+ + LGL ++ L + TVI GPSGVGKSSLI L
Sbjct: 158 LSILTGLGLLAVQSLLNHKITVICGPSGVGKSSLIKQLIPE------------------- 198
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
++ R+G VS +GKHTTRH+ L PL GG LADTPGFNQP L+ + LA FP
Sbjct: 199 ---QEIRIGTVSEHWHKGKHTTRHIELFPLPTGGLLADTPGFNQPH-LEFSPSDLAACFP 254
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTK 321
EI+ L+ C F+NC HL EP CVV+G WERY +Y E+ ++ T
Sbjct: 255 EIRTRLQIQ---ACQFHNCQHLTEPDCVVRGAWERYPHYQVFHQELTADQDAAATTPHLA 311
Query: 322 REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD 364
+ R +L K RRQS + LD+ D
Sbjct: 312 AKHTQRLS-----------QLSRKAQRRQSHQTSQSLWLDDAD 343
>gi|412992782|emb|CCO18762.1| ribosome-associated GTPase [Bathycoccus prasinos]
Length = 608
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 212/392 (54%), Gaps = 61/392 (15%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGS----IDWVDRRGMIENVFQRSTEILDP-PVAN 76
VELLC RALLKK+K++VLVGD V + + IDWV G I ++ +R E + +AN
Sbjct: 191 VELLCNCRALLKKMKQKVLVGDIVTLDAEKSGIDWVQGSGTIYDIEKRKNEGGNNLAIAN 250
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD LL FS+ QP LE LTRFLV E +P L NK +L++EE + W+ ++ WG
Sbjct: 251 VDVTLLTFSLSQPPLEEKQLTRFLVAFEYARVPFHLVFNKKDLIEEERVEEWREKMRRWG 310
Query: 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADV---- 191
Y+P F SV + G+D +++ + +T + GPSGVGKSSLIN LR++ A V
Sbjct: 311 YDPKFVSVATGDGIDEIVKVIGSGKTVALAGPSGVGKSSLINRLRATSALESALSVEKRQ 370
Query: 192 -----------DNWFEPILG---------------------SKWFEDQR----------- 208
D+ E G S+ E+++
Sbjct: 371 QNDYDEDRNRKDSSEEGEEGKITFVTDLDVEGGGGGKLKKGSRSVENEKAREILESADLQ 430
Query: 209 -VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
V +VS +SGRGKHTTRHVSLL + GG LADTPGF PSL + + +A FPEI++ +
Sbjct: 431 SVKQVSARSGRGKHTTRHVSLLRMKGGNLLADTPGFGYPSLESMVVKDVALCFPEIRDAI 490
Query: 268 ---KANEPAKCSFNNCLHLGEPGCVV-KGDW--ERYQYYFQLLDEIRIREEFQLRTFGTK 321
K A+C+F +C H+ EPGCVV +W ER Y +LL+E++ + + + K
Sbjct: 491 QRAKEERDARCAFTDCTHVHEPGCVVGDSNWTQERLDLYMELLEEVK-KLAVKEKEAAYK 549
Query: 322 REGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353
RE VR K G + E +LE K HRR +R+
Sbjct: 550 RETHVRMKQAAGGADRVEAKLETKSHRRVNRR 581
>gi|22298530|ref|NP_681777.1| ribosome-associated GTPase [Thermosynechococcus elongatus BP-1]
gi|38257591|sp|Q8DK79.1|RSGA_THEEB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|22294710|dbj|BAC08539.1| tll0987 [Thermosynechococcus elongatus BP-1]
Length = 348
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 176/325 (54%), Gaps = 29/325 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
I++ L ++ C F+NC H EPGC V+G+WERY Y + L ++ E +
Sbjct: 246 IRQRLSQDQ---CLFDNCRHDQEPGCCVRGNWERYPLYIEYLHQL---ETIASAEPSLAK 299
Query: 323 EGDVRYKVGDMGVQQAEPRLEPKKH 347
V+ K G Q+ EP L+ KK+
Sbjct: 300 VPLVKAKSDRQGQQRLEPLLDAKKY 324
>gi|428222562|ref|YP_007106732.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
7502]
gi|427995902|gb|AFY74597.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
7502]
Length = 345
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 186/350 (53%), Gaps = 40/350 (11%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
ELLC+ RA LKK + V VGD++ V DW RG I VF R + P VANVD ++
Sbjct: 29 AELLCIRRARLKKTGQAVYVGDRIEVEEPDWQGARGAISGVFPRRNLLERPMVANVDRVV 88
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L F++ +P+++P+ L+RFLV S + + L K +LV E W RL WGY+PL
Sbjct: 89 LAFALAEPEIDPYQLSRFLVNLASQDLEVLLCFTKRDLVTVEFWQAWCDRLVGWGYKPLA 148
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
SV + GL+ L Q L + TV+ G SGVGKSSLIN L + N
Sbjct: 149 VSVNTGEGLEELRQYLSEGVTVVTGQSGVGKSSLINFL-----------IPNL------- 190
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ RV VS K G G+HTTRHV L P+ G LADTPGF QP+ L L FP
Sbjct: 191 ----NIRVHGVSLKLGTGRHTTRHVELFPIGDRGLLADTPGFTQPT-LHCDPLGLIDCFP 245
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFG-- 319
E++ N C F +CLHL EP C ++GDWERY++Y + I E F +T
Sbjct: 246 EVQ-----NLKHSCQFRDCLHLNEPECGIRGDWERYEHYC-----LFIEEAFDYKTAQEA 295
Query: 320 -TKREGDVRYKVGDMGVQQAEPRLEPKKH----RRQSRKRINQSILDELD 364
+ ++ K G G + EPRL K H RR + ++++ S ++LD
Sbjct: 296 IATADKSLKSKSGQGGTTKEEPRLVTKSHRRRSRRSNHQQLDTSFQEDLD 345
>gi|159464341|ref|XP_001690400.1| hypothetical protein CHLREDRAFT_49443 [Chlamydomonas reinhardtii]
gi|158279900|gb|EDP05659.1| predicted protein [Chlamydomonas reinhardtii]
Length = 308
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 177/307 (57%), Gaps = 27/307 (8%)
Query: 49 SIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
++DWV RG + V RS+ + DP VANV+H LL+F++D P E ++RFLV E+ G+
Sbjct: 27 AVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLVFALDTPPFEEQQVSRFLVAYEAAGV 86
Query: 109 PLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGP 167
+L LNK +LV EVL RL WGYEP+ S E+ G++ + RL D+ +V+ GP
Sbjct: 87 SFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVLSCETGEGVEQVAARLSDRVSVVAGP 143
Query: 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227
SG GKSSLIN LR H D + + GRG HTT +S
Sbjct: 144 SGAGKSSLINLLRRGRHRPDL-------------------QAAPGTAAMGRGMHTTTSIS 184
Query: 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287
LL L GGG+LADTPGF QP+L + LA FPEI +++ +P C F++CLH+ EPG
Sbjct: 185 LLRLLGGGWLADTPGFGQPTLDDIASPQLAACFPEISDLV-GEQP--CRFSDCLHVAEPG 241
Query: 288 CVVKG-DWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKK 346
C V+G ERY +Y + L +IR + +L+ REG + K G ++ E RL+ K+
Sbjct: 242 CAVRGAGLERYAFYLRFLHDIRANDVTRLQRARADREGYAKAKSVRGGGERMEARLDSKR 301
Query: 347 HRRQSRK 353
HRR SR+
Sbjct: 302 HRRTSRQ 308
>gi|318042991|ref|ZP_07974947.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CB0101]
Length = 337
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 172/314 (54%), Gaps = 37/314 (11%)
Query: 21 GVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G+E LLCV R L K +++ VGD+V + IDW + RG + + RS+ + P VAN
Sbjct: 26 GIEHLLCVRRTRLGKTGQQICVGDRVQIDGIDWPEGRGAVAALEPRSSLLERPAVANCSR 85
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+++ +++QP+L+P LTRFL+ AE TG+ + L L K +L+ E W+ RL WGY+P
Sbjct: 86 VVVAVALEQPQLDPLQLTRFLLTAERTGVAVELVLTKADLLTAEQQQAWRERLGGWGYDP 145
Query: 140 LFCSVESKLGLDSLLQRLRDQ-TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S + G+ L +RL V+ GPSGVGKSSLINAL P
Sbjct: 146 LLVSAQQGEGISELRERLSAPGIAVLCGPSGVGKSSLINAL----------------VPE 189
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L RV VS + RG+HTTRHV L PL+G LADTPGFN+P L + + L
Sbjct: 190 LA------LRVSAVSGRLQRGRHTTRHVELFPLAGAALLADTPGFNRPDLPQEPAE-LGP 242
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI---------RI 309
FPEI++ L C F NCLH G+PGC V DW+R+ Y L+ + R
Sbjct: 243 LFPEIRQRLAEG---VCRFKNCLHQGDPGCAVGSDWDRHPLYLSCLEAVLAQAARERTRT 299
Query: 310 REEFQLRTFGTKRE 323
+ L+ G++RE
Sbjct: 300 ADTAGLKQRGSRRE 313
>gi|86605496|ref|YP_474259.1| ribosome small subunit-dependent GTPase A [Synechococcus sp.
JA-3-3Ab]
gi|86554038|gb|ABC98996.1| ribosome small subunit-dependent GTPase A [Synechococcus sp.
JA-3-3Ab]
Length = 363
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 168/293 (57%), Gaps = 33/293 (11%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD----RRGMIENVFQRSTEILDPPVANV 77
ELLC RA LKK+ + V+VGD V V D RG IE + R T++ P +AN+
Sbjct: 55 AELLCTARAKLKKMGQSVMVGDWVEVSLPPAADSLWPERGAIEAILPRRTQLPRPAIANI 114
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+L++ ++ +P+ EP AL+R LV+AE++ + + + NK + V+ V +W+ RL WGY
Sbjct: 115 TQVLVVMALAEPEPEPNALSRLLVQAEASHLRVQVVFNKCDCVEAAVAESWRQRLQRWGY 174
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
EPL S ++ G+ L +R RDQ +V+ GPSGVGKSSL+N L + + A
Sbjct: 175 EPLLVSALTEAGIPELRRRCRDQISVVAGPSGVGKSSLLNRLLPAVQLTTQA-------- 226
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSL 256
VS K +G+HTTRHV L PL GG++AD+PGFN + V+ Q L
Sbjct: 227 --------------VSEKLRQGRHTTRHVELFPLPEGGWIADSPGFNAGEGIPPVSPQQL 272
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-DWERYQYYFQLLDEIR 308
+ FPE++E L C F +CLH EPGC ++ DWER +Y QLL E++
Sbjct: 273 IRCFPEVRERL-----GTCQFRDCLHDREPGCGLRELDWERRGFYLQLLHELQ 320
>gi|317968399|ref|ZP_07969789.1| GTPase engC [Synechococcus sp. CB0205]
Length = 334
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 172/305 (56%), Gaps = 29/305 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLCV R L K +++ VGD+V V IDW + R I V RS+ + P VAN +++
Sbjct: 28 QLLCVRRTRLGKTGQQICVGDRVEVEGIDWPEARAAIAAVAPRSSLLERPAVANCSRVVV 87
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
++ QP+L+P LTRFL+ AE TG+ + L L K +L+ L W+ RL WGY P
Sbjct: 88 AAALAQPELDPLQLTRFLLTAERTGVAVELVLTKADLLSALELEQWRERLTAWGYVPQLV 147
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +S LGL +L +RL + +V+ GPSGVGKSSLINAL P L
Sbjct: 148 SSQSGLGLAALRERLAQPGVSVLCGPSGVGKSSLINALL----------------PQL-- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RV VS + RG+HTTRHV L P+ G LAD+PGFN+PS L L FP
Sbjct: 190 ----RLRVSAVSGRLQRGRHTTRHVELFPVEPGALLADSPGFNRPS-LPAEPTELGSLFP 244
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI--RIREEFQLRTFG 319
EI++ L E + C F NCLH G+PGC V DW+R+ Y L+ + ++ + + R+ G
Sbjct: 245 EIRQRL---ESSACQFKNCLHQGDPGCAVGSDWDRHGLYLNCLESVQQQVARQPRPRSGG 301
Query: 320 TKREG 324
K+ G
Sbjct: 302 LKQRG 306
>gi|87301573|ref|ZP_01084413.1| GTPase EngC [Synechococcus sp. WH 5701]
gi|87283790|gb|EAQ75744.1| GTPase EngC [Synechococcus sp. WH 5701]
Length = 333
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 165/296 (55%), Gaps = 27/296 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ L + R+ VGD+V + IDW R + ++ R++ + PPVAN D +++
Sbjct: 42 QLLCTRRSRLGQAGERIHVGDRVGLEGIDWPAGRAAVGDLLPRTSLLGRPPVANCDRIVV 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ +M P +P L+RFL+ AE +G P+ + +K++LV + L W+ RL +WGY+P+
Sbjct: 102 VIAMADPVPDPEQLSRFLLTAEHSGQPVQVVFSKLDLVPPDQLERWRQRLRSWGYDPIAV 161
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S S GL SL +RL + +V+ GPSGVGKSSL+NAL P L
Sbjct: 162 STASGEGLASLKERLAQPGISVVCGPSGVGKSSLLNAL----------------VPALA- 204
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RVG VS + RG+HTTRHV L PL+ G +ADTPGFN+P L L FP
Sbjct: 205 -----LRVGTVSGRLRRGRHTTRHVELFPLAPGALIADTPGFNRPE-LPSDPAVLPALFP 258
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRT 317
EI L+ C F+NC H G+PGC V W+RY YY L E++ L T
Sbjct: 259 EIAAALREG---PCRFSNCQHRGDPGCQVGTAWDRYAYYAGGLAELQQASSAALET 311
>gi|86610357|ref|YP_479119.1| hypothetical protein CYB_2937 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558899|gb|ABD03856.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 342
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 163/289 (56%), Gaps = 37/289 (12%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV----GSIDWVDRRGMIENVFQRSTEILDPPVA 75
T E+LC RA LKK ++V+VGD V V + D RG+IE + R T++ P +A
Sbjct: 48 TPAEILCTSRAKLKKTGQQVMVGDWVEVRLPPAAADLWPERGVIEAILPRRTQLPRPAIA 107
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N +L++ ++ +P EP AL+R LV+AE++ + + + LNK + VD EV TW RL W
Sbjct: 108 NATQVLVVVALAEPDPEPNALSRLLVQAEASQLRVQVVLNKCDCVDPEVATTWVERLQRW 167
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GYEPL S ++ G+ L Q RDQ +V++GPSGVGKSSL+N L
Sbjct: 168 GYEPLLVSAHTQAGIPQLQQCCRDQISVVMGPSGVGKSSLLNRL---------------- 211
Query: 196 EPILGSKWFEDQRVG--EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVT 252
D R+ VS + G G+HTTRHV L PL GG++AD+PGFN + V
Sbjct: 212 --------LPDVRLATQAVSRRLGHGRHTTRHVELFPLPEGGWIADSPGFNAGEGIPPVH 263
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-DWERYQYY 300
L + FPE+++ L A C F +CLH EPGC ++ DWER +Y
Sbjct: 264 PLQLIRCFPEVRDRLGA-----CQFRDCLHHREPGCGLRDLDWERRTFY 307
>gi|388519253|gb|AFK47688.1| unknown [Medicago truncatula]
Length = 217
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 114/125 (91%), Gaps = 2/125 (1%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEV 124
VD+EV
Sbjct: 205 VDKEV 209
>gi|254430506|ref|ZP_05044209.1| GTPase [Cyanobium sp. PCC 7001]
gi|197624959|gb|EDY37518.1| GTPase [Cyanobium sp. PCC 7001]
Length = 379
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 173/332 (52%), Gaps = 35/332 (10%)
Query: 18 DKTGVE----LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP 73
D+ G E LLC R L K + VGD+V V IDW RG + V R + P
Sbjct: 44 DQPGPEARTRLLCTRRTRLAKSGLAICVGDRVRVDGIDWRAGRGAVAAVHPRHGRLERPA 103
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VANV ++++ S+ +P L+P LTRFL+ AE+ G P+ L L+K +LV + W R+
Sbjct: 104 VANVSRIVVVASLAEPALDPLQLTRFLITAEACGSPVLLVLSKADLVPPAERDAWCRRVR 163
Query: 134 TWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
WGY P+ +V S GL++L + L + V+ GPSGVGKSSL+NAL
Sbjct: 164 GWGYPPVALAVPSGEGLEALRRELSQPGIAVLCGPSGVGKSSLLNAL------------- 210
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
P L RV VS + RG+HTTRHV L + +ADTPGFN+P+L +
Sbjct: 211 ---VPELA------LRVAAVSGRLQRGRHTTRHVELFGIGPQALVADTPGFNRPALPR-Q 260
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREE 312
+ L FPE++ L C F++CLH GEPGC V DWER+ +Y Q L+ I +
Sbjct: 261 PELLGPLFPEVRRQLA--RAGSCRFSDCLHRGEPGCSVGMDWERWPHYSQCLEAIEQEQH 318
Query: 313 FQLRTFGTKREGDVRYKVGDMGVQQAEPRLEP 344
R + VR + GD EPRL P
Sbjct: 319 RDPRGSAAAPQSAVRRR-GD----GLEPRLAP 345
>gi|148241123|ref|YP_001226280.1| GTPase engC [Synechococcus sp. RCC307]
gi|147849433|emb|CAK26927.1| Probable GTPase engC [Synechococcus sp. RCC307]
Length = 288
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 157/281 (55%), Gaps = 25/281 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA L +V+VGD+V V DW++ R + ++ R ++ P +ANVD +L++
Sbjct: 32 LLCTRRARLAHGGLKVMVGDRVGVEGCDWIEGRAAVGSLEPRRNQLQRPALANVDQVLVV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ QP ++P +L+RFL+ AE+ G + L+K +LV ++ W RL WGY+ L S
Sbjct: 92 MALAQPAIDPESLSRFLLSAETAGAEVIPVLSKADLVSDQQQQQWLDRLVGWGYQALAIS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
GL +L RL V+ GPSGVGKSSL+NAL AA
Sbjct: 152 RHDPAGLAALEDRLSRGVAVLCGPSGVGKSSLLNALVPELQLRTAA-------------- 197
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
VS K RG+HTTRHV L L GG LADTPGFN+P L + +AQ FPEI
Sbjct: 198 --------VSGKLQRGRHTTRHVELHDLPAGGLLADTPGFNRPE-LPADPELVAQLFPEI 248
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLL 304
++ L+A +C F NC HL EPGC ++ WERY Y +L+
Sbjct: 249 RQQLEAG--VRCRFRNCRHLQEPGCGLQRQWERYPSYVELM 287
>gi|194476885|ref|YP_002049064.1| GTPase EngC [Paulinella chromatophora]
gi|171191892|gb|ACB42854.1| GTPase EngC [Paulinella chromatophora]
Length = 312
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 161/286 (56%), Gaps = 27/286 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC R L + R+ VGD+V V SIDW RR ++ ++ RS+ + P VAN L+
Sbjct: 35 ELLCTCRTRLTQRGERICVGDQVEVESIDWKQRRAVVVSIGPRSSILKRPMVANCTRTLV 94
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ ++++P L P L+RFL+ AE+ +P+ + NK +LV ++ W+ R++ WGY
Sbjct: 95 VVTLNEPNLNPDQLSRFLLTAEAADLPIDVVFNKSDLVTFAIIQQWQKRVYKWGYASFAI 154
Query: 143 SVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL L + L+ + +VI GPSGVGKSSLIN+L P L
Sbjct: 155 SSRTGEGLHKLRKHLKTSSLSVICGPSGVGKSSLINSL----------------IPKLNL 198
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K VG VS + RG+HTTRHV L P+ +ADTPGFN+P L QSL FP
Sbjct: 199 K------VGSVSGRLQRGRHTTRHVELFPIEPNAMIADTPGFNRPDLPD-EPQSLGWLFP 251
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
EI+ + C F NCLH G+ GC + +W+RY++Y Q L+E+
Sbjct: 252 EIRYAIIKRS---CRFRNCLHQGDLGCAIGIEWDRYRFYRQSLEEL 294
>gi|148238361|ref|YP_001223748.1| GTPase engC [Synechococcus sp. WH 7803]
gi|147846900|emb|CAK22451.1| Probable GTPase engC [Synechococcus sp. WH 7803]
Length = 302
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 158/289 (54%), Gaps = 27/289 (9%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
T LLC R L V VGD+V V +ID + R ++ V RS+ ++ PPVAN
Sbjct: 30 TPARLLCTRRTRLNHRGAAVHVGDRVTVEAIDPIQARAVVSAVEPRSSFLVRPPVANASC 89
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+L+ + +QP + +RFL+ AE TG+ + L L K +L+ E K RL WGY P
Sbjct: 90 VLVALAAEQPAFDADQASRFLLTAEQTGLQVQLVLTKCDLLAPEQQLALKQRLEGWGYAP 149
Query: 140 LFCSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ SV++ LGLD L L Q TV+ GPSGVGKSSLINAL P
Sbjct: 150 VMVSVQTGLGLDPLRAVLASQAITVLCGPSGVGKSSLINALL----------------PG 193
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L RVG VS + RG+HTTRHV L P S G +ADTPGFN+P L ++L
Sbjct: 194 LA------LRVGAVSGRLQRGRHTTRHVELHPFSPGARVADTPGFNRPD-LPGDARNLEV 246
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
FPE+++ L + C F +CLH EPGC V DWERY +Y ++E+
Sbjct: 247 LFPELRDQLTIH---PCRFRDCLHRDEPGCGVSRDWERYGFYRGAVEEL 292
>gi|33239471|ref|NP_874413.1| GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|38257396|sp|Q7VEJ4.1|RSGA_PROMA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33236996|gb|AAP99065.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 309
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L KC F NC+HL EP C + DWERY Y L E+
Sbjct: 263 LRSQLLIK---KCKFRNCMHLNEPDCAISRDWERYSNYKNFLQEM 304
>gi|78183606|ref|YP_376040.1| GTPase EngC [Synechococcus sp. CC9902]
gi|78167900|gb|ABB24997.1| GTPase EngC [Synechococcus sp. CC9902]
Length = 300
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 158/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L + V VGD+V V +ID R ++ V R + + PPVANV +++
Sbjct: 32 LLCTRRSRLTHRGQEVNVGDRVRVDAIDANAARAVVSEVSPRQSWLTRPPVANVSLVVVA 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+ + L L KV+LV E L RL WGY+PL S
Sbjct: 92 LAVDQPAFDPDQASRFLLTAERTGLDVQLVLTKVDLVSAEALTQLCERLRGWGYDPLPLS 151
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
ES G+ L +RL+ T V+ GPSGVGKSS++N+L PH S
Sbjct: 152 SESGSGIKVLQKRLQSTTLAVLCGPSGVGKSSVLNSL--LPHLS---------------- 193
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P+ +ADTPGFN+P L L FPE
Sbjct: 194 ----LRVGAVSGRLQRGRHTTRHVELFPIGDEARVADTPGFNRPELPD-DPHELGVLFPE 248
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L +P C F +CLH GEPGC V WERY Y + LDE+
Sbjct: 249 LRRQL---DPWPCRFRDCLHRGEPGCGVSKSWERYGLYIKALDEV 290
>gi|88809340|ref|ZP_01124848.1| hypothetical protein WH7805_09319 [Synechococcus sp. WH 7805]
gi|88786559|gb|EAR17718.1| hypothetical protein WH7805_09319 [Synechococcus sp. WH 7805]
Length = 302
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 160/285 (56%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID + R ++ +V RS+ ++ PPVAN +L+
Sbjct: 34 LLCTRRTRLHHRGAAVHVGDRVTVEAIDPLQARAVVSDVEPRSSFLVRPPVANASCVLVA 93
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP + +RFL+ AE TG+ + L L K +L+ E K RLH WGY P+ S
Sbjct: 94 LAVEQPAFDADQASRFLLTAEQTGLRVQLVLTKSDLLAPEHQLALKQRLHGWGYSPVLVS 153
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
V++ GL++L L Q TV+ GPSGVGKSSL+NAL P L
Sbjct: 154 VQTGAGLNTLRAVLASQAITVLCGPSGVGKSSLLNALL----------------PGLA-- 195
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P + G +ADTPGFN+P L ++L FPE
Sbjct: 196 ----LRVGAVSGRLQRGRHTTRHVELHPFAPGARVADTPGFNRPD-LPGDARNLEVLFPE 250
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
+++ L + C F +CLH EPGC V DWERY +Y ++E+
Sbjct: 251 LRDQLTIH---PCRFRDCLHRDEPGCGVSRDWERYTFYRGAVEEL 292
>gi|427703563|ref|YP_007046785.1| ribosome small subunit-dependent GTPase A [Cyanobium gracile PCC
6307]
gi|427346731|gb|AFY29444.1| ribosome small subunit-dependent GTPase A [Cyanobium gracile PCC
6307]
Length = 362
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 199/375 (53%), Gaps = 42/375 (11%)
Query: 2 RVIVQQSEPSRTS-DCNDKTGVE--LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
RV+ Q+ S D + GV+ LLC R L K +V VGD+V V ++DW RRG
Sbjct: 9 RVVALQANYCLVSLDGPSELGVDGHLLCTRRTRLDKSGLQVCVGDRVTVAAVDWRARRGA 68
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
+ + R + + P VANV+ ++++ ++ +P L+P LTRFL+ AE+TG P+ + L+K +
Sbjct: 69 VVGLEPRRSLLERPAVANVNRVVVVVAVAEPGLDPLQLTRFLITAEATGQPVQVVLSKAD 128
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ-TTVIVGPSGVGKSSLIN 177
L+ + W RL WGY + S S GL+ L ++L V+ GPSGVGKSSL+N
Sbjct: 129 LLPPAEVGAWCRRLEGWGYGTVAISTRSGEGLEILRRQLAAPGIAVLCGPSGVGKSSLLN 188
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
AL P L + RV VS + RG+HTTRHV L ++ +
Sbjct: 189 AL----------------APAL------ELRVATVSGRLRRGRHTTRHVELFSVAPEALV 226
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
AD+PGFN P+ L QSLA FPE+ L+A C F NC HLG+PGC + W+R
Sbjct: 227 ADSPGFNTPA-LPADPQSLAAAFPELLARLQAT---PCRFANCRHLGDPGCAMGDGWDRQ 282
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEP---KKHRRQSRKR 354
Y + L+E+ E R+ R G R G+ G++Q RLEP + RR SR
Sbjct: 283 AIYGRCLEEV---EAVAARS----RSGQGRQ--GERGLRQRGDRLEPLLDPQLRRSSRST 333
Query: 355 INQSILDELDELDDD 369
+ Q + +L L+ D
Sbjct: 334 LRQGLEQDLPALEGD 348
>gi|159902560|ref|YP_001549904.1| GTPase [Prochlorococcus marinus str. MIT 9211]
gi|159887736|gb|ABX07950.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 169/302 (55%), Gaps = 28/302 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + + LLC R+ L + V VGD+V+V +I + G++ +F RS+ PPV
Sbjct: 36 DLDIEVSSRLLCTQRSRLAYSESFVSVGDRVLVEAISFSKATGVVCKIFPRSSFFERPPV 95
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+ ++ +L S+DQP+ + +RFL+ AE+T ++L L K +L+ + +LN + RL+
Sbjct: 96 ANITNIFVLISLDQPRFDYDQASRFLLTAENTRQKVSLILTKKDLITQNLLNQYLDRLNQ 155
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
WGY P SV++ G+ L L + + V GPSG GKSSL+N L P+AS
Sbjct: 156 WGYNPYPISVKTGDGVQKLKNTLTNSKIGVFCGPSGAGKSSLLNYLL--PYASIP----- 208
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
VG++S K RGKHTTR+V L L+ +ADTPGFN+P + +
Sbjct: 209 ---------------VGDLSKKLSRGKHTTRNVELFQLTNNSLIADTPGFNRPE-IDIDP 252
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD-EIRIREE 312
+ LA FPEI++ + N +C F +CLHLGEPGC + +ERY Y Q L I R +
Sbjct: 253 KELAFLFPEIRQQIHTN---RCKFRDCLHLGEPGCALDKKFERYSNYKQFLKLMINRRRQ 309
Query: 313 FQ 314
+Q
Sbjct: 310 YQ 311
>gi|37523837|ref|NP_927214.1| hypothetical protein glr4268 [Gloeobacter violaceus PCC 7421]
gi|35214842|dbj|BAC92209.1| glr4268 [Gloeobacter violaceus PCC 7421]
Length = 343
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 183/353 (51%), Gaps = 39/353 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+LC RA LKK + VLVGD+V V ID RG+I R + + PP+AN +L++
Sbjct: 26 VLCTRRARLKKTGQSVLVGDRVEVAEIDSASGRGVIAATCARRSVLSKPPIANCTGVLVV 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P +P L+RFLV E+ + + + LNK++ V E ++ + + WGY S
Sbjct: 86 FALSEPAYDPALLSRFLVHIEAEDLGVIVCLNKIDEVPPEAVDGVAAAVGGWGYTVRPVS 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ GL +L L T V+ GPSG GKSSL+N L P L
Sbjct: 146 ARTGAGLAALRAELAG-TYVLAGPSGAGKSSLLNHL----------------HPGLA--- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
RVG++S + GRG+HTTRHV L L+ +AD PGFNQ L + + LA FPE
Sbjct: 186 ---LRVGDISARLGRGRHTTRHVELFALNAEALVADAPGFNQLE-LTLAPELLAGYFPEF 241
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVK-GDWERYQYYFQLLDEIRIREEFQLRTFGTKR 322
+ L +C F NCLH EPGC V+ + ERY Y L E+ + + Q RT +
Sbjct: 242 RPYL-----GRCQFRNCLHRDEPGCAVREANLERYGMYRDFLAEVLVSAQKQRRT--AEP 294
Query: 323 EGDVRYKVG---DMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDND 372
E +R + G D V A PRLE + R++ +R + L + DE D ++ D
Sbjct: 295 EEAIRLRGGLRRDKAV--AVPRLE--EQLRETSRRTARQRLGQWDETDAEEAD 343
>gi|113955161|ref|YP_729264.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CC9311]
gi|123132802|sp|Q0IE58.1|RSGA_SYNS3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|113882512|gb|ABI47470.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CC9311]
Length = 304
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 157/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L+ + C F +CLH EPGC V DWERY Y + ++++
Sbjct: 253 LRVQLEQH---PCRFRDCLHRDEPGCGVTRDWERYPIYRRAVEDL 294
>gi|352096744|ref|ZP_08957500.1| ribosome biogenesis GTPase RsgA [Synechococcus sp. WH 8016]
gi|351675966|gb|EHA59124.1| ribosome biogenesis GTPase RsgA [Synechococcus sp. WH 8016]
Length = 291
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 157/285 (55%), Gaps = 29/285 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 25 LLCTRRTRLSHRGEAVFVGDRVRVEAIDVSHARAVVADVEPRFSFLTRPPVANATTVVVA 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L T RLH WGY PL S
Sbjct: 85 LAVDQPAFDPDQASRFLLTAERTSLVVQLVLTKTDLLEPEALETL--RLHAWGYPPLLVS 142
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ LGL +L +RL +V+ GPSGVGKSSL+NAL D++
Sbjct: 143 TSNGLGLSNLKERLAGSPLSVLCGPSGVGKSSLLNAL--------IPDLE---------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 185 ----LRIGAVSGRLQRGRHTTRHVELHRLGAEARVADTPGFNRPELPD-DPRNLEVLFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L+ + C F +CLH EPGC V DWERY Y + ++E+
Sbjct: 240 LRAQLEHH---PCRFRDCLHRDEPGCGVTRDWERYPIYRRAVEEL 281
>gi|116071785|ref|ZP_01469053.1| GTPase EngC [Synechococcus sp. BL107]
gi|116065408|gb|EAU71166.1| GTPase EngC [Synechococcus sp. BL107]
Length = 300
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 156/285 (54%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD+V V +ID R ++ V R + + PPVANV +++
Sbjct: 32 LLCTRRSRLTHRGTEVNVGDRVRVDAIDAKQARAVVAEVSPRQSWLTRPPVANVSLVVVA 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP + +RFL+ AE TG+ + L L KV+LV E L RL WGY+PL S
Sbjct: 92 LAVEQPAFDLDQASRFLLTAERTGLDVQLVLTKVDLVSAEALTQLCERLRGWGYDPLPLS 151
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
ES G++ L ++L+ T V+ GPSGVGKSSL+N L PH S
Sbjct: 152 SESGSGMEVLQEQLQSTTLAVLCGPSGVGKSSLLNNL--LPHLS---------------- 193
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P+ +ADTPGFN+P L L FPE
Sbjct: 194 ----LRVGAVSGRLQRGRHTTRHVELFPIGDQARVADTPGFNRPELPD-DPHELGVLFPE 248
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L +P C F +CLH GEPGC V WERY Y + L+E+
Sbjct: 249 LRRQL---DPWPCRFRDCLHRGEPGCGVSKTWERYGLYTKALEEV 290
>gi|78211581|ref|YP_380360.1| GTPase EngC [Synechococcus sp. CC9605]
gi|123579049|sp|Q3ANM7.1|RSGA_SYNSC RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|78196040|gb|ABB33805.1| GTPase EngC [Synechococcus sp. CC9605]
Length = 304
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 153/284 (53%), Gaps = 27/284 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ V R + + PPVANV + ++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP +P +RFL+ AE TG+ + L L K +L+ L +RL WGY+PL S
Sbjct: 96 LAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFS 155
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ G+D+L QRL Q +V+ GPSGVGKSSL+N L D+
Sbjct: 156 SAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------CPDL----------- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE
Sbjct: 197 ---QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPE 252
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE 306
+++ L +P C F +CLH GEPGC V DWERY Y L E
Sbjct: 253 LRKQL---DPWPCRFRDCLHRGEPGCGVSTDWERYSLYEAALIE 293
>gi|398818318|ref|ZP_10576910.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. BC25]
gi|398028086|gb|EJL21610.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. BC25]
Length = 296
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 161/300 (53%), Gaps = 41/300 (13%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV +I+ + G I V +R+ E++ PPV+NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDAIN--EEEGYIMAVGERTNELVRPPVSNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P P L +FL E GI + L+K + V EE + + GY + S
Sbjct: 83 FSMYKPMFSPLLLDKFLTHTERAGIDSVIVLSKADQVSEEEVTEIVEKYEAIGYRVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ + + LRD+ +V G SGVGKSSLIN L P S
Sbjct: 143 TADERGVEEVREILRDRISVFAGQSGVGKSSLINML--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ G+VS K GRGKHTTRHV L+PL+GGGY+ADTPGF+ + ++ LA++F +
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLAGGGYVADTPGFSSLEFIDFSELDLAESFRDF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLR 316
A+ ++C F CLH+ EP C V+ E RY++Y Q +E++ E+Q R
Sbjct: 241 -----ADRSSECKFRGCLHVSEPACAVQAALEAGEINEQRYEHYKQFREELK---EYQRR 292
>gi|33864562|ref|NP_896121.1| hypothetical protein SYNW0026 [Synechococcus sp. WH 8102]
gi|81575477|sp|Q7UA74.1|RSGA_SYNPX RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33632085|emb|CAE06541.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 299
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 156/285 (54%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPD-DPSELGMLFPE 247
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L P C F +CLH EPGC + +WER+++Y L E
Sbjct: 248 LRVQLS---PWPCRFRDCLHRQEPGCGINREWERFEFYKDALQEC 289
>gi|260434543|ref|ZP_05788513.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. WH
8109]
gi|260412417|gb|EEX05713.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. WH
8109]
Length = 304
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 147/269 (54%), Gaps = 27/269 (10%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
V VGD+V V +ID R ++ V R + + PPVANV + ++ +++QP +P +R
Sbjct: 51 VYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVVLAVEQPSFDPDQASR 110
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FL+ AE TG+ + L L K +L+ L +RL WGY+PL S + G+D+L QRL
Sbjct: 111 FLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLALSSAAGTGIDALRQRLA 170
Query: 159 D-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
Q +V+ GPSGVGKSSL+N LR AA VS +
Sbjct: 171 GAQLSVLCGPSGVGKSSLLNQLRPDLQLRTAA----------------------VSGRLQ 208
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L PL +ADTPGFN+P L Q L FPE+++ L +P C F
Sbjct: 209 RGRHTTRHVELFPLGPSSRVADTPGFNRPDLPD-NPQELGVLFPELRQQL---DPWSCRF 264
Query: 278 NNCLHLGEPGCVVKGDWERYQYYFQLLDE 306
+CLH GEPGC V DWERY Y L E
Sbjct: 265 RDCLHRGEPGCGVSTDWERYALYKAALIE 293
>gi|116074299|ref|ZP_01471561.1| GTPase EngC [Synechococcus sp. RS9916]
gi|116069604|gb|EAU75356.1| GTPase EngC [Synechococcus sp. RS9916]
Length = 299
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 158/285 (55%), Gaps = 27/285 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V RS+ + PPVANV +++
Sbjct: 31 LLCTRRTRLSHRGAAVHVGDRVWVEAIDPQQGRAVVADVEPRSSWLTRPPVANVTAVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+MDQP +P +RFL+ AE TG+ + + L K +L+ + RL WGY P+ S
Sbjct: 91 FAMDQPTFDPDQASRFLLTAEQTGLEVQVLLTKSDLLSSDQRQALVQRLEAWGYAPIAIS 150
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ GLD L +RL+ Q +V+ GPSGVGKSSL+N L P S
Sbjct: 151 STTGEGLDMLRERLQTQALSVLCGPSGVGKSSLLNGL--IPDLS---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + +G+HTTRHV L PL G +ADTPGFN+P L K +L FPE
Sbjct: 193 ----LRVGAVSGRLQKGRHTTRHVELHPLGQGARVADTPGFNRPDLPKQV-HNLEVLFPE 247
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
++ L EP C F +CLH EPGC V DWERY Y + ++E+
Sbjct: 248 LRRQL---EPHPCRFRDCLHREEPGCGVSRDWERYGIYRRAVEEL 289
>gi|226313311|ref|YP_002773205.1| GTPase [Brevibacillus brevis NBRC 100599]
gi|226096259|dbj|BAH44701.1| GTPase [Brevibacillus brevis NBRC 100599]
Length = 296
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 160/300 (53%), Gaps = 41/300 (13%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV I+ + G I V +R+ E++ PP++NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDVIN--EEEGYIMEVGERTNELVRPPISNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P P L +FL E GI + L+K + V EE + + GY + S
Sbjct: 83 FSMYKPMFSPLLLDKFLTHTEHAGIDSVIVLSKADQVSEEEVTEIVKKYEAIGYRVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ + + LRD+ +V G SGVGKSSLIN L P S
Sbjct: 143 TVDERGVEDVREILRDRISVFAGQSGVGKSSLINML--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ G+VS K GRGKHTTRHV L+PL+GGGY+ADTPGF+ + ++ LA++F +
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLAGGGYVADTPGFSSLEFIDFSELDLAESFLDF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLR 316
A+ ++C F CLH+ EP C V+ E RY++Y Q +E++ E+Q R
Sbjct: 241 -----ADRSSECKFRGCLHVSEPACAVQAALEAGEISEQRYEHYKQFREELK---EYQRR 292
>gi|333371221|ref|ZP_08463181.1| ribosome-associated GTP-binding protein [Desmospora sp. 8437]
gi|332976463|gb|EGK13309.1| ribosome-associated GTP-binding protein [Desmospora sp. 8437]
Length = 291
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 156/290 (53%), Gaps = 37/290 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK K LVGD+V D ++ G++ + RSTE+L PPVANV+ +++ S
Sbjct: 25 CRARGIFKKKKESPLVGDRVTYEETDPME--GVVTRIHPRSTELLRPPVANVEQAVVVGS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSV 144
+ QP +P L RFLV AE G+ + + L K +L+ D + + ++ GY L SV
Sbjct: 83 LRQPGFQPELLDRFLVHAEREGLEVLILLTKRDLLEDGDEVERIRAIYAPAGYRVLPTSV 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G++++ + L+ Q +V GPSG GKSSL+NA+ AAD+
Sbjct: 143 RTGEGIEAVKRALQGQLSVFAGPSGAGKSSLLNAVLP------AADLQT----------- 185
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
GEVS K GRG+HTTRHV +L L GGG +ADTPGF+Q S + L FPE
Sbjct: 186 -----GEVSKKLGRGRHTTRHVEILDLPGGGQVADTPGFSQLSFGGFEETELGACFPE-- 238
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L A P C F CLH EPGC VK E RY+ Y Q L+EI
Sbjct: 239 --LAARAP-DCRFRGCLHRNEPGCRVKEAVEEGEIHPSRYRNYLQFLEEI 285
>gi|72383183|ref|YP_292538.1| GTPase EngC [Prochlorococcus marinus str. NATL2A]
gi|123773738|sp|Q46I43.1|RSGA_PROMT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|72003033|gb|AAZ58835.1| GTPase EngC [Prochlorococcus marinus str. NATL2A]
Length = 312
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 27/287 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVCVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L + ++
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
VS K RG HTTRHV L + G LADTPGFN+P ++ A F
Sbjct: 211 -----------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFAFLF 258
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
PE + L ++C F NCLH EPGCV+ D ERY +Y Q L+E+
Sbjct: 259 PEFRTQLSN---SQCKFRNCLHRDEPGCVIDKDLERYPFYRQNLEEM 302
>gi|87123325|ref|ZP_01079176.1| GTPase EngC [Synechococcus sp. RS9917]
gi|86169045|gb|EAQ70301.1| GTPase EngC [Synechococcus sp. RS9917]
Length = 300
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 165/289 (57%), Gaps = 27/289 (9%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
+G+ LLC R L V VGD V V +ID R ++ +V RS+ + PPVANV
Sbjct: 28 SGLRLLCTRRTRLAHRGAAVHVGDHVWVEAIDRRQARAVVASVEPRSSWLARPPVANVTA 87
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
++++ +++QP +P +RFL+ AE TG+ + + L+K +L+ EE L RL WGY
Sbjct: 88 VVVVLAVEQPAFDPDQASRFLLTAEQTGLAVQVLLSKSDLIPEEPLRLLVQRLQGWGYGV 147
Query: 140 LFCSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S ++ +GLD+L +L Q +V+ GPSGVGKSSL+NAL P
Sbjct: 148 LPVSSQTGMGLDTLRSQLACQPLSVLCGPSGVGKSSLLNAL----------------IPQ 191
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L + RVG VS + RG+HTTRHV L PL+ G +ADTPGFN+P L +L
Sbjct: 192 L------ELRVGAVSGRLQRGRHTTRHVELHPLASGARVADTPGFNRPE-LPADAHNLEV 244
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
FPE++ + A P C F +CLH EPGC V DW+RY Y + ++++
Sbjct: 245 LFPELRSRI-AQHP--CRFRDCLHRDEPGCGVDRDWDRYPLYRRAVEDL 290
>gi|124024731|ref|YP_001013847.1| GTPases [Prochlorococcus marinus str. NATL1A]
gi|254766822|sp|A2BZC2.1|RSGA_PROM1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|123959799|gb|ABM74582.1| Predicted GTPases [Prochlorococcus marinus str. NATL1A]
Length = 312
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 156/287 (54%), Gaps = 27/287 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVGVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L + ++
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
VS K RG HTTRHV L + G LADTPGFN+P ++ A F
Sbjct: 211 -----------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFAFLF 258
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
PE + L ++C F NCLH EPGCV+ D ERY +Y + L+E+
Sbjct: 259 PEFRTQLSN---SQCKFRNCLHRDEPGCVIDKDLERYPFYRENLEEM 302
>gi|158320468|ref|YP_001512975.1| ribosome small subunit-dependent GTPase A [Alkaliphilus oremlandii
OhILAs]
gi|158140667|gb|ABW18979.1| ribosome small subunit-dependent GTPase A [Alkaliphilus oremlandii
OhILAs]
Length = 292
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 42/294 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K LVGD V + +D +++G+IE++ R E++ P V+N+D +++F+
Sbjct: 25 CKARGLFRKKKITPLVGDYVEIDVLDHKNKKGVIEDIKSRKNELIRPSVSNIDQAIVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
+ QP L RFLV AES + + + LNK++L++ EE+++T+++ GY+ +
Sbjct: 85 VTQPDPHLSLLDRFLVLAESQRLNIIICLNKIDLLEPADYEEIVHTYRA----AGYKIIL 140
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + ++G++ L L+++TTV GPSGVGKS+L+N + G
Sbjct: 141 TSTKKEIGIEELRHELKNKTTVFAGPSGVGKSTLLNHVHP------------------GL 182
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K + GE+STK RGKHTTRH ++ + G++ DTPGF+ + + + L FP
Sbjct: 183 KL----QTGEISTKISRGKHTTRHAEIMEIEENGWVVDTPGFSSLDMNFIDESDLHYYFP 238
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
E L+ C FN+C HL EPGC VK + RY Y Q ++EIR
Sbjct: 239 EYSFHLE-----NCKFNSCKHLNEPGCGVKEALQSGKISESRYNSYVQFIEEIR 287
>gi|399048077|ref|ZP_10739807.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. CF112]
gi|398053991|gb|EJL46137.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. CF112]
Length = 296
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 157/300 (52%), Gaps = 41/300 (13%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV +I+ + G + V +R+ E++ PP++NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDAIN--EEEGYVMEVGERTNELVRPPISNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P L +FL E GI + L+K + V +E ++ + GY+ + S
Sbjct: 83 FSMYKPMFSSLLLDKFLAHTEHVGIDSVIVLSKADQVSQEEVDAIVRQYEAIGYQVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ GL+ + L D+ TV G SGVGKSSLIN L P S
Sbjct: 143 TVDERGLEEVRSILHDRITVFAGQSGVGKSSLINTL--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ G+VS K GRGKHTTRHV L+PL GGGY+ADTPGF+ + T+ LA++F +
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLPGGGYVADTPGFSSLEFIDFTELDLAESFRDF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEFQLR 316
+ A C F CLH+ EP C V+ +RY++Y Q +E++ E+Q R
Sbjct: 241 AAL-----SADCKFRGCLHVSEPSCAVQAALAAGELSEDRYEHYKQFREELK---EYQRR 292
>gi|357040462|ref|ZP_09102249.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum gibsoniae DSM
7213]
gi|355356553|gb|EHG04339.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum gibsoniae DSM
7213]
Length = 289
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 163/291 (56%), Gaps = 37/291 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C +R +++ + +VLVGD+V + I+ D G++E++ RSTE++ PPVANV+ +++
Sbjct: 22 LNCAIRGKIRRQRGQVLVGDRVRIKQIN--DTDGVVEDILPRSTELVRPPVANVEQSVII 79
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P+ P L RFLV++ ++ I + NK +LV + + K T GY + S
Sbjct: 80 FAINNPEPNPSLLDRFLVQSLASRITPLICFNKNDLVGDTEPDIVKQYKKT-GYAVFWVS 138
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ +D L + L D+ TV GPSGVGKSSL+NAL +P L K
Sbjct: 139 AKTGSHIDELREVLTDRITVFAGPSGVGKSSLLNAL----------------QPGLVLK- 181
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
G++STK RGKHTTRHV L+PL+GGG +ADTPGF+ L + ++ LA F E
Sbjct: 182 -----TGDISTKLKRGKHTTRHVELIPLAGGGLVADTPGFSSMHLPPMLREELAGYFIEF 236
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
A +C F CLH EPGC VK + RY++Y L E+
Sbjct: 237 -----AVYEGQCKFVGCLHHREPGCAVKDAVDRGRISALRYRHYLDFLTEV 282
>gi|333978762|ref|YP_004516707.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822243|gb|AEG14906.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 291
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 151/289 (52%), Gaps = 37/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R ++ K++VLVGD+V +G+IE + R T ++ PPVANVD L++F+
Sbjct: 26 CALRGRFRREKKQVLVGDRVTFRL--QPHGQGVIEEIHPRRTILVRPPVANVDRALIVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M P F L RFL++AE G+ + NKV+L E++ GY + S
Sbjct: 84 MKDPDPNTFLLDRFLIQAEHAGVGPAICFNKVDL-GEDLSRDMIGAYRRAGYPVVCTSTL 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L L+ TV+ GPSGVGKSSL+NAL P L
Sbjct: 143 DGSGLDELRALLQGHITVLAGPSGVGKSSLLNAL----------------VPGL------ 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ + GE+S K GRG+HTTRHV LL L GGG +ADTPGF+ L ++ ++ L + +PE
Sbjct: 181 NLKTGEISRKLGRGRHTTRHVELLRLPGGGLVADTPGFSSLYLPEMKREELGEFYPEF-- 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ C F CLH EPGC VK E RY+ Y QLL E+
Sbjct: 239 ---VSRRDGCRFTGCLHFQEPGCAVKRAVEEGEISAFRYENYLQLLQEV 284
>gi|414152946|ref|ZP_11409273.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455328|emb|CCO07175.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 292
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 150/290 (51%), Gaps = 37/290 (12%)
Query: 26 CVVRALLKKIK-RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
C +R + K LVGD+V V + G I+ V R TE+ PPVAN+D +++F
Sbjct: 25 CTLRGKFRLAKGAAALVGDRVRVTPVR--GNTGRIDEVLPRKTELFRPPVANIDQAVIVF 82
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
++ P+ L RFLV AE G+ + LNK +L+ + W GY + S
Sbjct: 83 AVQDPEPNLALLDRFLVLAEHAGVAPVVCLNKADLLSGRRDHEWLRLYRKIGYPTVITST 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ G+D L Q L +T+V+ GPSGVGKSSL+NA+ +P L K
Sbjct: 143 QNNEGIDDLRQLLAGKTSVLAGPSGVGKSSLLNAV----------------QPGLQLK-- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
GE+S K RGKHTTRHV LLPL+ GG++ADTPGF+ L + ++ L FPE
Sbjct: 185 ----TGEISYKLRRGKHTTRHVELLPLTNGGFVADTPGFSSLDLPDMEREELGYCFPEF- 239
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
A A+C F CLH EP C VK + RYQ+Y L+E+
Sbjct: 240 ----AACAAECKFKGCLHCHEPHCAVKTAVAQGLINQTRYQHYLMFLEEV 285
>gi|339009266|ref|ZP_08641838.1| putative ribosome biogenesis GTPase RsgA [Brevibacillus
laterosporus LMG 15441]
gi|338773744|gb|EGP33275.1| putative ribosome biogenesis GTPase RsgA [Brevibacillus
laterosporus LMG 15441]
Length = 299
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 160/292 (54%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK ++ LVGD VV + + DR G + + +R++E++ P +ANVD +L+
Sbjct: 28 CRARGLFKKKGAKITPLVGDWVVFEAPN--DRDGYVMEIEERTSELVRPSIANVDLAVLV 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS +P + P L +FLV E GI + + K +L++E+ + + + GY + S
Sbjct: 86 FSAKEPDMSPLLLDKFLVHTEHAGIDAIIVITKADLLEEQDCSRFVAEYEKVGYRVIPTS 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + G++ + + L + V G SGVGKSSL+NA+ F I
Sbjct: 146 ILDRRGVEQVREELIGKLAVFAGQSGVGKSSLLNAI---------------FPGI----- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ GE+S K GRG+HTTRHV LLPL GGY+ADTPGF+ + +T+ LAQ F +
Sbjct: 186 --SLQTGEISQKLGRGRHTTRHVELLPLKEGGYVADTPGFSSLDFINMTELDLAQAFRDF 243
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
++ +++E C F CLH+ EP C V+ + RY++Y Q ++E+R
Sbjct: 244 EQ--RSDE---CKFRGCLHITEPSCAVQAALQAGEIVEHRYKHYLQFMEELR 290
>gi|229086414|ref|ZP_04218590.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-44]
gi|228696930|gb|EEL49739.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-44]
Length = 293
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 154/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAEN--PNEGYVLEVFGRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + ++ S GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYASDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D+L L +V+ G SGVGKSS++N LR P L K
Sbjct: 143 SINTSESIDTLKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDLALK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 187 ------TNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTHCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE E C F C HL EP C VK E RY++Y Q ++EIR R+
Sbjct: 240 LKE-----ESQYCKFRGCTHLSEPKCAVKAAVEEGKITHYRYEHYKQFVEEIRERK 290
>gi|410460749|ref|ZP_11314422.1| GTPase RsgA [Bacillus azotoformans LMG 9581]
gi|409926679|gb|EKN63835.1| GTPase RsgA [Bacillus azotoformans LMG 9581]
Length = 293
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 153/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV + + + G I ++ +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNGITPLVGDYVVFEAEN--ENEGYIMDIKERKNELVRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL---NTWKSRLHTWGYEPLFC 142
+P P L RFLV ES I + + K++L+D E L N + S GY+ +F
Sbjct: 83 AVEPNFSPVLLDRFLVLIESNHITPVICITKMDLLDNESLEKINQYVSDYKQIGYDVIFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ L LRD+ +V G SGVGKSSL+NAL P S
Sbjct: 143 SSKTMDGIEKLRPYLRDRISVFAGQSGVGKSSLLNALL--PELS---------------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+ GG +ADTPGF+ + + LA FPE
Sbjct: 185 ----LKTNEISNHLGRGKHTTRHVELIQFE-GGLVADTPGFSSLDFIDIEADELAHCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
++E C F CLHL EP C +K E RYQ+Y + +DEI+ R+
Sbjct: 240 MRE-----RSHDCKFRGCLHLSEPKCAIKAGVEQNEIPPYRYQHYVEFIDEIKERK 290
>gi|258515517|ref|YP_003191739.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
acetoxidans DSM 771]
gi|257779222|gb|ACV63116.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
acetoxidans DSM 771]
Length = 294
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 152/293 (51%), Gaps = 36/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R K K+ +LVGD+V + +I+ + G++E V R TE++ PPVAN+D +++F+
Sbjct: 26 CKPRGRFKIEKQLILVGDRVQIKTIN--KKNGVVEKVLPRITELVRPPVANIDCAIVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RF++ AE+ + NKV+L+ E + GY + SV+
Sbjct: 84 LKSPEPNLNLLDRFILLAEAGKTEPVICFNKVDLLSNEEVTPVLDIYDKIGYRTIVTSVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GL+ L L+D +V GPSGVGKSSL+NA++
Sbjct: 144 TGAGLEELRAVLKDHISVFAGPSGVGKSSLLNAVQPGLQL-------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GE+S K RG+HTTRHV LL L GGY+ DTPGF+ L ++ K+ LA FPE+
Sbjct: 184 --KTGEISEKLQRGRHTTRHVELLELDNGGYVVDTPGFSSLYLPQMLKEELAGFFPEMNN 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
+ C FN CLH EP C VK + ERY +Y L+EI E
Sbjct: 242 FWQ-----NCRFNGCLHNQEPDCAVKSAVESGEINKERYAHYIMFLEEIVFHE 289
>gi|15615066|ref|NP_243369.1| ribosome-associated GTPase [Bacillus halodurans C-125]
gi|38257772|sp|Q9K9Z1.1|RSGA_BACHD RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|10175123|dbj|BAB06222.1| BH2503 [Bacillus halodurans C-125]
Length = 294
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 40/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD+VV + + D G + + +R E+L PP+ANVD +L+FS
Sbjct: 25 CRGRGNFRNRNIKPLVGDEVVFEAENKTD--GYVLEIMERKNELLRPPIANVDRAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E+ GI + ++K++L+ EE L T K + + GY+
Sbjct: 83 AAEPTFSPLLLDRFLVHVEANGIEPLIVISKIDLLTEEELETIKQYRNDYEQLGYKVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +LGLD++ + D +VI G SGVGKSSL+NA+ + A D++
Sbjct: 143 STIEQLGLDAIRKEFDDHVSVIAGQSGVGKSSLLNAI------NPALDIET--------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S+ GRGKHTTRHV L+P G G +ADTPGF+ + + + L+ FPE
Sbjct: 188 -------NQISSHLGRGKHTTRHVELIPF-GSGLVADTPGFSSLDFIDMEPEELSHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+++ L + C F C H EP C VK RY++Y L+E++ + +
Sbjct: 240 MRDRLPS-----CKFRGCTHTQEPKCAVKEALAQGEIREFRYEHYVTFLEEVKTQHK 291
>gi|421873669|ref|ZP_16305281.1| ribosome small subunit-dependent GTPase A [Brevibacillus
laterosporus GI-9]
gi|372457456|emb|CCF14830.1| ribosome small subunit-dependent GTPase A [Brevibacillus
laterosporus GI-9]
Length = 299
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 159/292 (54%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK ++ LVGD VV + + DR G + + +R++E++ P +ANVD +L+
Sbjct: 28 CRARGLFKKKGAKITPLVGDWVVFEAPN--DRDGYVMEIEERTSELVRPSIANVDLAVLV 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS +P + P L +FLV E GI + + K +L++E+ + + GY + S
Sbjct: 86 FSAKEPDMSPLLLDKFLVHTEHAGIDAIIVITKADLLEEQDCSRLVAEYEKVGYRVIPTS 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + G++ + + L + V G SGVGKSSL+NA+ F I
Sbjct: 146 ILDQRGVEQVREELIGKLAVFAGQSGVGKSSLLNAI---------------FPGI----- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ GE+S K GRG+HTTRHV LLPL GGY+ADTPGF+ + +T+ LAQ F +
Sbjct: 186 --SLQTGEISQKLGRGRHTTRHVELLPLKEGGYVADTPGFSSLDFINMTELDLAQAFRDF 243
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
++ +++E C F CLH+ EP C V+ + RY++Y Q ++E+R
Sbjct: 244 EQ--RSDE---CKFRGCLHITEPSCAVQAALQAGEIVEHRYKHYLQFMEELR 290
>gi|253580151|ref|ZP_04857418.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848670|gb|EES76633.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 292
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + +D ++ G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDKQKPLVGDNVEIEVLDEQEKEGSVTAILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M+ PK L RFL+ E +P + NK +L +E L + GY+ +F S
Sbjct: 85 MENPKPNFMLLDRFLIMMEKENVPAVICFNKKDLAKQEELELLYETYKSCGYDVIFSSTF 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD + + L+ +TTV+ GPSGVGKSS+ NAL+ +
Sbjct: 145 NGEGLDEIREILKGKTTVVAGPSGVGKSSITNALQENVQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RGKHTTRH ++P+ YL DTPGF+ L + +Q L FPE +
Sbjct: 184 -METGEISKKLKRGKHTTRHSQVIPVGHDTYLMDTPGFSSLYLTDIEEQELKAYFPEFRR 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+C F C H+ EP C VK RY+ Y L +E++ + F
Sbjct: 243 Y-----EEQCRFQGCRHIHEPDCGVKAALAEHEISQLRYEDYLGLYNELKEKRRF 292
>gi|388507482|gb|AFK41807.1| unknown [Medicago truncatula]
Length = 121
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 103/125 (82%), Gaps = 5/125 (4%)
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
ML NE KCSFNNCLHLGEPGC+VKGDWERY +YFQLLDEIRIREEFQLRTFGTKRE D
Sbjct: 1 MLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKRESD 60
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDDDNDDEIDLENDPIVRA 385
VR + G+MG QQAEPRL KKHRRQSRK+ NQSILD+LD+ D+ +++ DP++ A
Sbjct: 61 VRLRTGNMGSQQAEPRLVLKKHRRQSRKKTNQSILDDLDDDDNLLDEEN-----DPLLNA 115
Query: 386 IRNEN 390
+RNEN
Sbjct: 116 LRNEN 120
>gi|153855361|ref|ZP_01996510.1| hypothetical protein DORLON_02524 [Dorea longicatena DSM 13814]
gi|149752181|gb|EDM62112.1| ribosome small subunit-dependent GTPase A [Dorea longicatena DSM
13814]
Length = 292
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D +++G I + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVEIEVLDESEKKGNIVKILPRQNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + + T GY +F S +
Sbjct: 85 ITKPNPHFNLLDRFLVMMESKEIPVVLCFNKEDIATDPQIKELEEIYETCGYPMVFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + + L+ +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 EERGIEKIRELLKGKTTAIAGPSGVGKSSIINILQ--PDA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +STK RGKHTTRH L + Y+ DTPGF+ + K+ L FPE +E
Sbjct: 183 EMETGAISTKIERGKHTTRHSELFAIDEDSYIMDTPGFSSLYVNDYEKEELKYLFPEFRE 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C FN C H+ EPGC VK E RYQ Y ++ +E++
Sbjct: 243 Y-----EGMCRFNGCDHVHEPGCAVKEALEEGKIHKIRYQNYIEMYEELK 287
>gi|317121762|ref|YP_004101765.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
marianensis DSM 12885]
gi|315591742|gb|ADU51038.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
marianensis DSM 12885]
Length = 303
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 162/315 (51%), Gaps = 50/315 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG--MIENVFQRSTEILDPPVA 75
D TG LLC +R L++ VL GD+V V V + G IE V R ++ PP+A
Sbjct: 21 DDTGEVLLCALRGRLRRQAGDVLTGDRVEV-----VLQPGGAAIERVLPRRNRLVRPPIA 75
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRL 132
NVD +LL+ S+ P P + R LV+AE+ +P+ L K++LV ++ L +RL
Sbjct: 76 NVDRVLLIQSLADPDPVPILMDRVLVQAEALELPVVLCFTKLDLVVKSPDDPLPEPSARL 135
Query: 133 ----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GY + GLD+L L++ TV+ GPSG GKS+L+NAL+ +
Sbjct: 136 VDGYRRAGYPVHLVAAPRGWGLDALAAALKEGATVLAGPSGAGKSTLLNALQPGLQLA-- 193
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
GEVS K GRG+HTTRHV+LLPL+ GG++ADTPGF++ L
Sbjct: 194 --------------------TGEVSRKLGRGRHTTRHVALLPLAEGGWVADTPGFSRVDL 233
Query: 249 LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYF 301
+ + L +PEI+ E C F CLH EPGC V+ + RYQ Y
Sbjct: 234 PDLEPEELGDLWPEIR-----REAPDCRFRGCLHRSEPGCAVRAARDAGRIAAWRYQNYL 288
Query: 302 QLLDEI--RIREEFQ 314
LL E+ R+ E ++
Sbjct: 289 VLLGELEERLAERYK 303
>gi|150390538|ref|YP_001320587.1| ribosome small subunit-dependent GTPase A [Alkaliphilus
metalliredigens QYMF]
gi|254766347|sp|A6TRW0.1|RSGA_ALKMQ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|149950400|gb|ABR48928.1| ribosome small subunit-dependent GTPase A [Alkaliphilus
metalliredigens QYMF]
Length = 292
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 156/290 (53%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +L+K K LVGD V + D +++GMI+++F R TE++ P VANVD ++++FS
Sbjct: 25 CKGRGILRKKKLTPLVGDYVEITVTDEDNKKGMIDDIFPRKTELIRPTVANVDQVIVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ QP L FL+ AE+ I + + LNK++LV E + GY + S
Sbjct: 85 VTQPDPHLSLLDHFLILAETQNIDVVICLNKLDLVQREDVAELVGIYEKVGYPVILTSQN 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+GL+ L + LR +TTV GPSGVGKS+L+N R PH +
Sbjct: 145 DSIGLEQLEKVLRGKTTVFAGPSGVGKSTLLN--RILPHVT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GE+S+K RGKHTTRHV L+ L G++ DTPGF+ ++ + ++ LA F + +
Sbjct: 184 -LQTGELSSKIARGKHTTRHVELISLETEGWVVDTPGFSSLNIDFLKEEELADYFIDFEP 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
K C F +C+HL EP C VK + RY Y Q++ EI+
Sbjct: 243 FAK-----DCRFLSCVHLNEPICGVKTALKAGQLVQSRYNSYLQMIGEIK 287
>gi|15895006|ref|NP_348355.1| ribosome-associated GTPase [Clostridium acetobutylicum ATCC 824]
gi|38257739|sp|Q97IC1.1|RSGA_CLOAB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|15024696|gb|AAK79695.1|AE007682_5 Predicted GTPase (YLOQ B.subtilis ortholog) [Clostridium
acetobutylicum ATCC 824]
Length = 288
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 155/282 (54%), Gaps = 38/282 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I ++ +G+IE + R+ +++ PPV+NV ++FS+ P+ L +F
Sbjct: 38 IVGDKV---DITVINGKGVIEKIHPRTNKLIRPPVSNVTQAFIVFSIVNPEFSSDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + + +NK++LV+EE+L K+ L+ GYE F + +SK+G++ L + L+D
Sbjct: 95 LILCEFNNIKVKVCINKIDLVNEELLTPIKNLLNNTGYELKFLNAKSKIGINELKESLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+L+N++ S + G++S K RG
Sbjct: 155 NITVVCGPSGVGKSTLMNSIAGS----------------------NVMKTGDISEKLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
K+TTRH L+ ++ GG++ DTPGF+ L + + L FPE E C ++
Sbjct: 193 KNTTRHSELIEVA-GGFIVDTPGFSSLDLNFIDRYELKDLFPEFYEY-----NGSCKYST 246
Query: 280 CLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEFQ 314
C+H EPGC VK + ERY +Y L+++ +R ++
Sbjct: 247 CVHDKEPGCEVKKAVEEGNINIERYNFYVDTLNKLSVRRNYK 288
>gi|423084331|ref|ZP_17072836.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
002-P50-2011]
gi|423088027|ref|ZP_17076412.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
050-P50-2011]
gi|357542636|gb|EHJ24678.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
002-P50-2011]
gi|357543555|gb|EHJ25572.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
050-P50-2011]
Length = 294
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 155/291 (53%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E V R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEVDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIEFD- 241
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY Y QLL+EIR
Sbjct: 242 --KFND---CKFGSKCIHENEPNCAIKEAVANGEISKERYDSYIQLLNEIR 287
>gi|167760437|ref|ZP_02432564.1| hypothetical protein CLOSCI_02811 [Clostridium scindens ATCC 35704]
gi|167661936|gb|EDS06066.1| ribosome small subunit-dependent GTPase A [Clostridium scindens
ATCC 35704]
Length = 292
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 148/295 (50%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V++ ++D + G I V +R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVIIEALDEEQKTGNITEVLKRKNELVRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + ++ GY +F S
Sbjct: 85 IVRPNPHFNLLDRFLVMMESKEIPVILCFNKEDIATDPQVKELEAIYENCGYPLIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + LR +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 KDKNIDQVKEVLRGKTTAIAGPSGVGKSSIINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S+K RGKHTTRH L P+ Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGAISSKIERGKHTTRHTELFPVDADSYIMDTPGFSSLYVNDFEKEELKYYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A C FN C H+ EPGC VK E RYQ Y ++ +E++ + +
Sbjct: 241 ---AVYEGTCKFNGCDHIHEPGCAVKEAVEEGKIHKVRYQNYIEMYEELKNKRRY 292
>gi|433544426|ref|ZP_20500810.1| GTPase [Brevibacillus agri BAB-2500]
gi|432184281|gb|ELK41798.1| GTPase [Brevibacillus agri BAB-2500]
Length = 272
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 156/297 (52%), Gaps = 41/297 (13%)
Query: 29 RALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSM 86
+ L KK +V LVGD VV +I+ + G + V +R+ E++ PP++NVD +L+FSM
Sbjct: 4 KRLFKKKDAKVNPLVGDWVVYDAIN--EEEGYVMEVGERTNELVRPPISNVDQAVLVFSM 61
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L +FL E GI + L+K + V +E ++ + GY+ + S
Sbjct: 62 YKPMFSSLLLDKFLAHTEHVGIDSVIVLSKADQVSQEEVDAIVRQYEAIGYQVIPTSTVD 121
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ GL+ + L D+ TV G SGVGKSSLIN L P S
Sbjct: 122 ERGLEEVRSILHDRITVFAGQSGVGKSSLINTL--FPGVS-------------------- 159
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
+ G+VS K GRGKHTTRHV L+PL GGGY+ADTPGF+ + T+ LA++F + +
Sbjct: 160 LQTGDVSQKLGRGKHTTRHVELIPLPGGGYVADTPGFSSLEFIDFTELDLAESFRDFAAL 219
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEFQLR 316
A C F CLH+ EP C V+ +RY++Y Q +E++ E+Q R
Sbjct: 220 -----SADCKFRGCLHVSEPSCAVQAALAAGELSEDRYEHYKQFREELK---EYQRR 268
>gi|335040148|ref|ZP_08533284.1| ribosome biogenesis GTPase RsgA [Caldalkalibacillus thermarum
TA2.A1]
gi|334179973|gb|EGL82602.1| ribosome biogenesis GTPase RsgA [Caldalkalibacillus thermarum
TA2.A1]
Length = 295
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 37/298 (12%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D +G C R + KK + LVGD V S+ +R G + + R ++ PP+ANV
Sbjct: 18 DHSGKVWQCRARGVFKKKGLQPLVGDVVQFESVS--EREGWVTQLKDRKNRLVRPPIANV 75
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWG 136
D LL+FS+ +P F L R LV E I + K++L D++ + + G
Sbjct: 76 DQALLVFSVKEPSFSSFLLDRMLVTVEKARIRPLICFTKLDLCPDDKNIQAAINVYQQLG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ S S G+D L++ LR + TV+ G SGVGKS+L+N L P A
Sbjct: 136 YQICQTSSVSGEGIDDLMKLLRGKITVLAGQSGVGKSTLLNLL--CPQA----------- 182
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ GEVS K GRG+HTTRHV LL L GGG +ADTPGF+Q + + L
Sbjct: 183 ---------ELETGEVSDKLGRGRHTTRHVELLQLPGGGLVADTPGFSQLDFKDIEPEEL 233
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
A F E + ++A C F CLH EPGC VK D RY +Y Q LDEI
Sbjct: 234 AACFVEFRAYMEA-----CKFRGCLHRDEPGCAVKSAVAQGEIDSGRYTHYLQFLDEI 286
>gi|121533692|ref|ZP_01665519.1| ribosome small subunit-dependent GTPase A [Thermosinus
carboxydivorans Nor1]
gi|121307683|gb|EAX48598.1| ribosome small subunit-dependent GTPase A [Thermosinus
carboxydivorans Nor1]
Length = 291
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 155/298 (52%), Gaps = 37/298 (12%)
Query: 19 KTGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+TG +L +C +R KK + +LVGD+V +D + +G+IE + R + + P VANV
Sbjct: 17 QTGDKLTMCTLRGRFKKERFSLLVGDEVEYLPLD--EGKGVIETILPRRSMLKRPMVANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L F+ P + RFL+ AE + + + LNK++L D + GY
Sbjct: 75 DQVILTFAAASPDPSFVIIDRFLILAELSQLNAQICLNKIDLADAAEIGQIVDLYRKIGY 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L SV++ G+D L ++L + TV GPSGVGKSSL+NA+ EP
Sbjct: 135 SVLETSVKTGQGIDELRRQLYGRITVFAGPSGVGKSSLLNAV----------------EP 178
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L GE+S K GRGKHTTR LLPL+GGG++ DTPGF+ + LA
Sbjct: 179 GL------SLVTGEISIKIGRGKHTTRFAELLPLAGGGFVVDTPGFSFTEFADIVPTELA 232
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
+ FPEI A PA C FN CLH EP C VK RY Y ++L E++
Sbjct: 233 RAFPEI----AAAAPA-CKFNTCLHHKEPQCAVKQAVTDGCIAASRYASYLEVLSEVQ 285
>gi|428279173|ref|YP_005560908.1| ribosome-associated GTPase [Bacillus subtilis subsp. natto BEST195]
gi|291484130|dbj|BAI85205.1| ribosome-associated GTPase [Bacillus subtilis subsp. natto BEST195]
Length = 298
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 154/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVK---GDWE----RYQYYFQLLDEIRIRE 311
+I+E + A C F CLHL EP C VK GD E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSASCKFRGCLHLKEPKCAVKQAVGDGELKQYRYDHYVEFMTEIKDRK 295
>gi|429765801|ref|ZP_19298081.1| ribosome small subunit-dependent GTPase A [Clostridium celatum DSM
1785]
gi|429185654|gb|EKY26628.1| ribosome small subunit-dependent GTPase A [Clostridium celatum DSM
1785]
Length = 296
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 150/290 (51%), Gaps = 40/290 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDR-RGMIENVFQRSTEILDPPVANVDHLLLLF 84
C R + + +VGD V + +D+ +G+I ++ +R +E++ P VANV ++F
Sbjct: 33 CKARGKFRHRDMKPMVGDDVDI----LIDKGKGVICDIHERVSELIRPTVANVTQAFVVF 88
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
++ P + L RFLV ES I + LNKV+LV EE K+++++ GYE LF +
Sbjct: 89 AVKNPDINYDLLNRFLVLCESNNIKAIVCLNKVDLVTEEEKEIVKNKINSIGYEVLFINA 148
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ LG++SL +RL TV+ GPSG GKS+LIN L H
Sbjct: 149 KQGLGIESLKERLDSNVTVLCGPSGAGKSTLINTLTEKYH-------------------- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
GEVS K GRG+HTTRH L+ + GY+ DTPGF+ + + K L FPE +
Sbjct: 189 --METGEVSEKIGRGRHTTRHSELIDVV-DGYIVDTPGFSTLEVNFIEKDDLKYCFPEFE 245
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ +C F CLH EP C VK E RY++Y + L+EI
Sbjct: 246 DY-----NHECKFRGCLHYKEPSCAVKEAVEEGKINKFRYEFYIRTLEEI 290
>gi|228992589|ref|ZP_04152516.1| ribosome biogenesis GTPase rsgA [Bacillus pseudomycoides DSM 12442]
gi|228998637|ref|ZP_04158224.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock3-17]
gi|229006137|ref|ZP_04163824.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock1-4]
gi|228755090|gb|EEM04448.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock1-4]
gi|228761105|gb|EEM10064.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock3-17]
gi|228767223|gb|EEM15859.1| ribosome biogenesis GTPase rsgA [Bacillus pseudomycoides DSM 12442]
Length = 293
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + +F+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAEN--PNEGYVLEIFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L K
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDLALK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 187 ------TDDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE E C F C HL EP C VK E RY++Y Q ++EIR R+
Sbjct: 240 LKE-----ESQYCKFRGCTHLSEPKCAVKAAVEEGKITQYRYEHYKQFVEEIRERK 290
>gi|336422117|ref|ZP_08602271.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009407|gb|EGN39401.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
5_1_57FAA]
Length = 292
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 147/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V++ ++D + G I V +R E++ P VAN+D L++F+
Sbjct: 25 CKAKGAFRKEKIKPLVGDNVIIEALDEEQKTGNITEVLKRKNELVRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + ++ GY +F S
Sbjct: 85 IVRPNPHFNLLDRFLVMMESKEIPVILCFNKEDIATDPQVKELEAIYENCGYPLIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + LR +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 KDKNIDQVKEVLRGKTTAIAGPSGVGKSSIINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S+K RGKHTTRH L P+ Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGAISSKIERGKHTTRHTELFPVDADSYIMDTPGFSSLYVNDFEKEELKYYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A C FN C H+ EPGC VK E RYQ Y ++ +E++ + +
Sbjct: 241 ---AVYEGTCKFNGCDHIHEPGCAVKEAVEEGKIHKVRYQNYIEMYEELKNKRRY 292
>gi|384164127|ref|YP_005545506.1| ribosome and sacculus morphogenesis GTPase [Bacillus
amyloliquefaciens LL3]
gi|328911682|gb|AEB63278.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens LL3]
Length = 296
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 156/297 (52%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLASDGESKEKILSYMKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + K+ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEKEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK GD + RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGDIQPYRYEHYKEFMQEIKERK 293
>gi|210617183|ref|ZP_03291450.1| hypothetical protein CLONEX_03672 [Clostridium nexile DSM 1787]
gi|210149458|gb|EEA80467.1| hypothetical protein CLONEX_03672 [Clostridium nexile DSM 1787]
Length = 306
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D +++G I V +R E++ P VAN+D L++F+
Sbjct: 39 CKAKGVFRKEKIKPLVGDNVEIDILDEAEKKGNIVEVLERKNELIRPAVANIDQALVVFA 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFL+ ES GIP+ L NK ++ E + K + GY+ +F S
Sbjct: 99 VTKPKPHFNLLDRFLIMMESKGIPVVLCFNKKDIAKEPEIQHLKEIYESCGYQMIFTSAL 158
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K ++++ Q LR +TT I GPSGVGKSSLIN + P A
Sbjct: 159 EKENIENVKQLLRGKTTAIAGPSGVGKSSLINIFQ--PDA-------------------- 196
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S K RGKHTTRH L+ + Y+ DTPGF+ K+ L F E
Sbjct: 197 NMETGTISEKIERGKHTTRHSELICIEEDTYIMDTPGFSSLYTNDFEKEELKYYFTEF-- 254
Query: 266 MLKANEP--AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EP KC F C H+ EP C VK E RY+ Y ++ +E++
Sbjct: 255 -----EPYEGKCKFQGCDHVHEPNCAVKAALEEGKIHHIRYENYLEMYNELK 301
>gi|337736947|ref|YP_004636394.1| ribosome-associated GTPase [Clostridium acetobutylicum DSM 1731]
gi|384458454|ref|YP_005670874.1| ribosome-associated GTPase [Clostridium acetobutylicum EA 2018]
gi|325509143|gb|ADZ20779.1| ribosome-associated GTPase [Clostridium acetobutylicum EA 2018]
gi|336292570|gb|AEI33704.1| ribosome-associated GTPase [Clostridium acetobutylicum DSM 1731]
Length = 288
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 154/282 (54%), Gaps = 38/282 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I + +G+IE + R+ +++ PPV+NV ++FS+ P+ L +F
Sbjct: 38 IVGDKV---DITVKNGKGVIEKIHPRTNKLIRPPVSNVTQAFIVFSIVNPEFSSDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + + +NK++LV+EE+L K+ L+ GYE F + +SK+G++ L + L+D
Sbjct: 95 LILCEFNNIKVKVCINKIDLVNEELLTPIKNLLNNTGYELKFLNAKSKIGINELKESLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+L+N++ S + G++S K RG
Sbjct: 155 NITVVCGPSGVGKSTLMNSIAGS----------------------NVMKTGDISEKLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
K+TTRH L+ ++ GG++ DTPGF+ L + + L FPE E C ++
Sbjct: 193 KNTTRHSELIEVA-GGFIVDTPGFSSLDLNFIDRYELKDLFPEFYEY-----NGSCKYST 246
Query: 280 CLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEFQ 314
C+H EPGC VK + ERY +Y L+++ +R ++
Sbjct: 247 CVHDKEPGCEVKKAVEEGNINIERYNFYVDTLNKLSVRRNYK 288
>gi|255307609|ref|ZP_05351780.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
gi|423092606|ref|ZP_17080410.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
70-100-2010]
gi|357553476|gb|EHJ35223.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
70-100-2010]
Length = 294
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 154/291 (52%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDENEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIEFD- 241
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY Y QLL EIR
Sbjct: 242 --KFND---CKFGSKCIHENEPNCAIKEAVTNGEISKERYDSYIQLLHEIR 287
>gi|240147171|ref|ZP_04745772.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
L1-82]
gi|257200638|gb|EEU98922.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
L1-82]
Length = 292
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKILPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY LF S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLFASAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE ++
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPEFRK 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EP C F C H+ EP C V+ E RY+ Y L +E++
Sbjct: 243 W----EPY-CRFQGCNHISEPDCGVRQGLEEGSISLLRYENYKLLYEELK 287
>gi|124021738|ref|YP_001016045.1| GTPase [Prochlorococcus marinus str. MIT 9303]
gi|254766823|sp|A2C5M0.1|RSGA_PROM3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|123962024|gb|ABM76780.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9303]
Length = 321
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 152/292 (52%), Gaps = 27/292 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDAEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLQRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADPRK 256
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
LA FPE + E C F +C H EPGC V WERY Y + L+E+
Sbjct: 257 LAVLFPEFDGQI---EDYPCRFRDCFHRDEPGCGVDKSWERYPIYKRFLEEM 305
>gi|154685994|ref|YP_001421155.1| ribosome-associated GTPase [Bacillus amyloliquefaciens FZB42]
gi|429505129|ref|YP_007186313.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|254766349|sp|A7Z4J8.1|RSGA_BACA2 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|154351845|gb|ABS73924.1| EngC [Bacillus amyloliquefaciens FZB42]
gi|429486719|gb|AFZ90643.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 296
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|126700195|ref|YP_001089092.1| GTPase [Clostridium difficile 630]
gi|254976167|ref|ZP_05272639.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
gi|255093557|ref|ZP_05323035.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
gi|255315300|ref|ZP_05356883.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
gi|255517968|ref|ZP_05385644.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
gi|255651084|ref|ZP_05397986.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
gi|384361791|ref|YP_006199643.1| ATP/GTP-binding protein [Clostridium difficile BI1]
gi|115251632|emb|CAJ69465.1| putative GTPase [Clostridium difficile 630]
Length = 294
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 154/291 (52%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIEFD- 241
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY Y QLL EIR
Sbjct: 242 --KFND---CKFGSKCIHENEPNCAIKEAVTNGEISKERYDSYIQLLHEIR 287
>gi|410584634|ref|ZP_11321736.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
subterraneus DSM 13965]
gi|410504220|gb|EKP93732.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
subterraneus DSM 13965]
Length = 304
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 158/308 (51%), Gaps = 48/308 (15%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+LC +R L++ VL GD+V + D IE V R ++ PP+ANVD +LL+
Sbjct: 28 ILCALRGRLRRQAGDVLTGDRV---EVALQDGGAAIERVLPRRNRLVRPPIANVDRVLLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRL----HTWG 136
S+ +P P + R +V+AE+ +P+ +A K++ V E+ L W +RL G
Sbjct: 85 QSLQEPDPVPILMDRVIVQAEAMDLPVVIAFTKLDRVARAPEDPLPGWAARLVEGYRLAG 144
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y + G++ L LR+ TV+ GPSG GKS+L+NAL+ + +
Sbjct: 145 YPVHLLAAPRGWGVEGLAAALREGVTVVAGPSGAGKSTLLNALQPGLNLA---------- 194
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
GEVS K GRG+HTTR V LLPL+GGG++ADTPGF++ L ++ + L
Sbjct: 195 ------------TGEVSRKLGRGRHTTRFVELLPLAGGGWVADTPGFSKLELPELEPEEL 242
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK--------GDWERYQYYFQLLDEI- 307
+PEI+ C F CLH EPGC V+ W RYQ Y LL E+
Sbjct: 243 GDLWPEIRRAAPG-----CRFRGCLHRSEPGCAVRAARDQGQIASW-RYQNYLVLLSEVE 296
Query: 308 -RIREEFQ 314
R+ E ++
Sbjct: 297 ERLAERYR 304
>gi|375362222|ref|YP_005130261.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731752|ref|ZP_16170875.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347051|ref|YP_007445682.1| GTPase RsgA [Bacillus amyloliquefaciens IT-45]
gi|371568216|emb|CCF05066.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073965|gb|EKE46955.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850809|gb|AGF27801.1| GTPase RsgA [Bacillus amyloliquefaciens IT-45]
Length = 296
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 153/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ D+TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFEDKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|255656555|ref|ZP_05401964.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
gi|296449993|ref|ZP_06891757.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP08]
gi|296878374|ref|ZP_06902382.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP07]
gi|296261263|gb|EFH08094.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP08]
gi|296430672|gb|EFH16511.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP07]
Length = 294
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 155/291 (53%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKHKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKKIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL ++ + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIEKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIEFD- 241
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY+ Y QLL+EIR
Sbjct: 242 --KFND---CKFGSKCIHENEPNCAIKEAVANGEISKERYESYIQLLNEIR 287
>gi|33862297|ref|NP_893857.1| hypothetical protein PMT0024 [Prochlorococcus marinus str. MIT
9313]
gi|81578082|sp|Q7V9C6.1|RSGA_PROMM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33640410|emb|CAE20199.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 321
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 27/292 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDDEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLKRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADLRK 256
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
LA FPE+ L E C F +C H EPGC V WERY Y + L+E+
Sbjct: 257 LAVLFPELDGQL---EDYPCRFRDCFHRDEPGCGVDKSWERYPIYKRFLEEM 305
>gi|423635368|ref|ZP_17611021.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD156]
gi|401278119|gb|EJR84055.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD156]
Length = 293
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 157/296 (53%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGDKVV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDKVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|152976227|ref|YP_001375744.1| ribosome-associated GTPase [Bacillus cytotoxicus NVH 391-98]
gi|254766350|sp|A7GRJ1.1|RSGA_BACCN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|152024979|gb|ABS22749.1| ribosome small subunit-dependent GTPase A [Bacillus cytotoxicus NVH
391-98]
Length = 293
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAEN--QNEGYVLEVFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE +++ ++ + GY LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEPMRKMVESYANDYREMGYAVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV + ++ L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SVHAAESIEILKPFLEECVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELISI-GSGLVADTPGFSSLDFIDIEVEDLTFCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE E C F C HL EP C VK E RY++Y Q ++EIR R+
Sbjct: 240 LKE-----ESQYCKFRGCTHLSEPKCAVKAAVEEGRIADYRYEHYKQFVEEIRERK 290
>gi|384159438|ref|YP_005541511.1| GTPase RsgA [Bacillus amyloliquefaciens TA208]
gi|384168485|ref|YP_005549863.1| ribosome-associated GTPase [Bacillus amyloliquefaciens XH7]
gi|328553526|gb|AEB24018.1| GTPase RsgA [Bacillus amyloliquefaciens TA208]
gi|341827764|gb|AEK89015.1| ribosome-associated GTPase [Bacillus amyloliquefaciens XH7]
Length = 296
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLASDGESKEKILSYMKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK GD + RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGDIQPYRYEHYKEFMQEIKERK 293
>gi|398304094|ref|ZP_10507680.1| GTPase RsgA [Bacillus vallismortis DV1-F-3]
Length = 298
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 153/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++++ + T+ GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTHDAIQTYAQDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQNSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + A C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSASCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|384175320|ref|YP_005556705.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594544|gb|AEP90731.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 298
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + A C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSASCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|386758301|ref|YP_006231517.1| ribosome-associated GTPase [Bacillus sp. JS]
gi|384931583|gb|AFI28261.1| ribosome-associated GTPase [Bacillus sp. JS]
Length = 298
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L+D E+ + + GY
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIDDQDTEDTIQAYAEDYRNIGYNVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGEIKQYRYDHYVEFMTEIKDRK 295
>gi|33860579|ref|NP_892140.1| hypothetical protein PMM0019 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633521|emb|CAE18478.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 305
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 161/284 (56%), Gaps = 25/284 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC ++ + + V VGD+V+V ID +R IE++ +R+ + P VAN+ ++ +
Sbjct: 34 KFLCKIKKSVNFRNQFVFVGDEVIVYQIDLQSKRATIESLVKRNNLLERPSVANISNIYV 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ S+++PKL + +FL+ +E G+ ++L L K +L+ EE + H WGY+ +
Sbjct: 94 ICSVEEPKLNLSQVNKFLISSEQLGVEVSLVLTKCDLITEEKRLLLIEKFHQWGYQAITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++ + L +LL L + + ++ +GPSGVGK++L+N + ++DN P
Sbjct: 154 NLNNPENLRTLLIELKKKKCSIFMGPSGVGKTTLLNMI--------IPNLDNKTAP---- 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
VS+K RGK+TTR+V L LS Y+ DTPGFN + L++ + L+ +P
Sbjct: 202 ----------VSSKIKRGKNTTRNVELFSLSSKSYIVDTPGFNIQT-LEIDIRELSNLYP 250
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD 305
EI + + NE C F NCLH+ + GC + ++ERY +Y ++++
Sbjct: 251 EIYKQV-VNEGIHCKFRNCLHVNDEGCKLNKNFERYTFYKEMVE 293
>gi|260684149|ref|YP_003215434.1| ATP/GTP-binding protein [Clostridium difficile CD196]
gi|260687808|ref|YP_003218942.1| ATP/GTP-binding protein [Clostridium difficile R20291]
gi|260210312|emb|CBA64629.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
gi|260213825|emb|CBE05805.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
Length = 306
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 154/291 (52%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 37 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 97 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 156
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 157 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 195
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 196 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIEFD- 253
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY Y QLL EIR
Sbjct: 254 --KFND---CKFGSKCIHENEPNCAIKEAVTNGEISKERYDSYIQLLHEIR 299
>gi|325662238|ref|ZP_08150853.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471490|gb|EGC74711.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
4_1_37FAA]
Length = 298
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 143/290 (49%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K KR+ LVGD V + + ++ G I +F R E++ P VAN+D L++F+
Sbjct: 31 CKAKGSFRKEKRKPLVGDNVEIDCLSEEEKTGNIIQIFPRKNELIRPAVANIDQALVVFA 90
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFL+ E+ GIP L NK ++ E+ + + GY+ LF S +
Sbjct: 91 VTDPKPHFNLLDRFLIMMETKGIPAVLCFNKQDIATEKEIQELQEIYRRCGYQILFTSAK 150
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 151 KEENIALVKEVLKGKTTTVAGPSGVGKSSLINILQ--PEAK------------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RGKHTTRH L+P+ Y+ DTPGF+ + + K+ L FPE
Sbjct: 190 -METGEISKKIARGKHTTRHSELIPIDEDSYIMDTPGFSSLYVNEFEKEELKYYFPEF-- 246
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F C H+ EP C VK E RYQ Y ++ E++
Sbjct: 247 ---TYYEGMCKFQGCDHIHEPKCAVKAAVEAGEIHKVRYQNYLEMYKELQ 293
>gi|291536611|emb|CBL09723.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
M50/1]
Length = 292
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE V R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKVLPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY L+ S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLYVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE ++
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPEFRK 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EP C F C H+ EP C V+ E RY+ Y L +E++
Sbjct: 243 W----EPY-CRFQGCNHISEPDCGVRQGLEEGSISLLRYENYKLLYEELK 287
>gi|229180137|ref|ZP_04307481.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 172560W]
gi|228603346|gb|EEK60823.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 172560W]
Length = 293
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 157/296 (53%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASRY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|331086039|ref|ZP_08335122.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406962|gb|EGG86467.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 292
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 143/290 (49%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K KR+ LVGD V + + ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGSFRKEKRKPLVGDNVEIDCLSEEEKTGNIIQIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFL+ E+ GIP L NK ++ E+ + + GY+ LF S +
Sbjct: 85 VTDPKPHFNLLDRFLIMMETKGIPAVLCFNKQDIATEKEIQELQEIYRRCGYQILFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 145 KEENIALVKEVLKGKTTTVAGPSGVGKSSLINILQ--PEAK------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RGKHTTRH L+P+ Y+ DTPGF+ + + K+ L FPE
Sbjct: 184 -METGEISKKIARGKHTTRHSELIPIDEDSYIMDTPGFSSLYVNEFEKEELKYYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F C H+ EP C VK E RYQ Y ++ E++
Sbjct: 241 ---TYYEGMCKFQGCDHIHEPKCAVKAAVEAGEIHKVRYQNYLEMYKELQ 287
>gi|291541047|emb|CBL14158.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
XB6B4]
Length = 292
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKILPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY L+ S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLYASAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE ++
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPEFRK 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EP C F C H+ EP C V+ E RY+ Y L +E++
Sbjct: 243 W----EPY-CRFQGCNHISEPDCGVRQGLEEGSISLLRYENYKLLYEELK 287
>gi|47569487|ref|ZP_00240167.1| GTPase YjeQ [Bacillus cereus G9241]
gi|47553816|gb|EAL12187.1| GTPase YjeQ [Bacillus cereus G9241]
Length = 293
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 157/296 (53%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ +++ + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIEIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE+ + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEVSQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|255101740|ref|ZP_05330717.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
Length = 294
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 153/291 (52%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K RGKHTTRH LL L GG +ADTPGF+ L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLVLEDIEEVELKDYFIEFD- 241
Query: 266 MLKANEPAKCSF-NNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
K N+ C F + C+H EP C +K G+ ERY Y QLL EIR
Sbjct: 242 --KFND---CKFGSKCIHENEPNCAIKEAVTNGEISKERYDSYIQLLHEIR 287
>gi|307102441|gb|EFN50716.1| hypothetical protein CHLNCDRAFT_142572 [Chlorella variabilis]
Length = 597
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 111/157 (70%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLCVVRALLKK++R VLVGD+V V IDW D RGM+E V R++++ +P VANVDH+LL+
Sbjct: 132 LLCVVRALLKKMRREVLVGDRVRVVGIDWADGRGMVEEVLPRTSQLSEPAVANVDHVLLV 191
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS P +P TR+L+ AE+ +P+T+A+NK +L+ E + ++ +WGY + S
Sbjct: 192 FSAALPAFQPSPATRYLLSAEAAWLPVTVAVNKADLLPAEEVQAVVDQVASWGYRGVAVS 251
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
V S GL L+Q LR + TV+ GPSG GKSS+INALR
Sbjct: 252 VVSGQGLQELMQVLRGRVTVVAGPSGAGKSSIINALR 288
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 38/203 (18%)
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPL-------------------------------- 231
E Q VG+VS + GRGKHTTR+V+LL L
Sbjct: 397 VELQAVGQVSQRIGRGKHTTRNVTLLELEGGGGVDGMNGGSSSSSTGSSGGSGSGGSGVS 456
Query: 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
GGG + DTPGFNQP L + L Q FPEI+ +L+ + +C+F C HL EPGCVV+
Sbjct: 457 GGGGLVVDTPGFNQPDLADMPATDLWQHFPEIRRLLEED---RCAFRGCQHLQEPGCVVR 513
Query: 292 -GDWERYQYYFQLLDEIRIREE--FQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHR 348
WERY Y ++ E+++ EE Q + +REG VR K G Q AE RLE K HR
Sbjct: 514 EAGWERYPLYREIHAELKVLEEQSAQRQASKKRREGSVRMKSRAGGQQGAEARLETKSHR 573
Query: 349 RQSRKRINQSILDELDELDDDDN 371
R SR+ + Q + + +++DD N
Sbjct: 574 RVSRRSVRQRLSELAKDVEDDAN 596
>gi|311068099|ref|YP_003973022.1| ribosome-associated GTPase [Bacillus atrophaeus 1942]
gi|419823920|ref|ZP_14347453.1| GTPase RsgA [Bacillus atrophaeus C89]
gi|310868616|gb|ADP32091.1| ribosome-associated GTPase [Bacillus atrophaeus 1942]
gi|388471957|gb|EIM08747.1| GTPase RsgA [Bacillus atrophaeus C89]
Length = 300
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 157/306 (51%), Gaps = 41/306 (13%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+ K G + C R + +K K LVGD VV + ++ G + + R+ E++ PP++N
Sbjct: 22 DTKEGKVIQCRGRGIFRKNKITPLVGDYVVYQAEH--EKEGYLLEIKDRTNELVRPPISN 79
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRL 132
VD +L+FS QP L RFLV E+ I + + K++LV++ E ++ +
Sbjct: 80 VDQAVLVFSAVQPTFSTSLLDRFLVLVEANDILPIICITKMDLVNDQKTKEAIHAYAKDY 139
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GYE S + + GL ++ R++TTV G SGVGKSSL+NA+ SP
Sbjct: 140 RKIGYEVYLTSSKEQNGLPDIIPHFRNKTTVFAGQSGVGKSSLLNAI--SPEL------- 190
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ R E+S GRGKHTTRHV L+ S GG +ADTPGF+ +
Sbjct: 191 -------------ELRTDEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIE 236
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
+ L TFPEI+E + A+C F CLHL EP C VK E RY +Y + +
Sbjct: 237 AEELGYTFPEIRE-----KSAECKFRGCLHLKEPKCAVKQAAENEEITKYRYDHYVEFMM 291
Query: 306 EIRIRE 311
EI+ R+
Sbjct: 292 EIKDRK 297
>gi|452855525|ref|YP_007497208.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079785|emb|CCP21542.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 296
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 154/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVQDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L+ TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELSSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|302392188|ref|YP_003828008.1| ribosome small subunit-dependent GTPase A [Acetohalobium arabaticum
DSM 5501]
gi|302204265|gb|ADL12943.1| ribosome small subunit-dependent GTPase A [Acetohalobium arabaticum
DSM 5501]
Length = 295
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 151/278 (54%), Gaps = 40/278 (14%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD+V ID ++ G+IE + RST++ P VAN+D ++L+F+ QP+L L RFL
Sbjct: 42 VGDRVEFSIIDEDEQTGVIEELLPRSTKLDRPAVANIDQVVLVFASQQPELNYELLDRFL 101
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRL 157
+ E+ G + + +NKV+LV LN + L + GY ++ S E++ GL+ L + L
Sbjct: 102 LLVEAYGFEILICINKVDLVG---LNEAQEALADYEDIGYRVVYTSAETEHGLNRLTEEL 158
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ + +V+ GPSGVGKSSL+N R SP A + VG+VS K
Sbjct: 159 QGRLSVLAGPSGVGKSSLLN--RLSPEA--------------------EMDVGKVSQKIK 196
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
+G+HTTRHV L+ L GG + DTPGF + + ++ LA F E++E +C F
Sbjct: 197 QGRHTTRHVELITLDNGGLVVDTPGFTSLRIDFIAERELAYFFREMREY-----TGQCKF 251
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
N+CLH EP C VK E RY Y L EI+
Sbjct: 252 NDCLHSSEPECRVKQALEEGEIPQSRYDSYLSFLSEIK 289
>gi|30021949|ref|NP_833580.1| ribosome-associated GTPase [Bacillus cereus ATCC 14579]
gi|75763207|ref|ZP_00742970.1| GTPase [Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|206971340|ref|ZP_03232291.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AH1134]
gi|218232949|ref|YP_002368662.1| ribosome-associated GTPase [Bacillus cereus B4264]
gi|218899014|ref|YP_002447425.1| ribosome-associated GTPase [Bacillus cereus G9842]
gi|228902365|ref|ZP_04066521.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 4222]
gi|228922615|ref|ZP_04085915.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940949|ref|ZP_04103508.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954138|ref|ZP_04116166.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960077|ref|ZP_04121741.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228966810|ref|ZP_04127854.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973878|ref|ZP_04134454.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980468|ref|ZP_04140778.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis Bt407]
gi|229047548|ref|ZP_04193138.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH676]
gi|229081116|ref|ZP_04213626.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock4-2]
gi|229111332|ref|ZP_04240885.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-15]
gi|229129137|ref|ZP_04258110.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-Cer4]
gi|229146432|ref|ZP_04274803.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST24]
gi|229152060|ref|ZP_04280255.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1550]
gi|229192030|ref|ZP_04319000.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 10876]
gi|296504356|ref|YP_003666056.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
gi|365159362|ref|ZP_09355543.1| ribosome small subunit-dependent GTPase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|384187921|ref|YP_005573817.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402564797|ref|YP_006607521.1| GTPase RsgA [Bacillus thuringiensis HD-771]
gi|410676235|ref|YP_006928606.1| putative ribosome biogenesis GTPase RsgA [Bacillus thuringiensis
Bt407]
gi|423359103|ref|ZP_17336606.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD022]
gi|423385364|ref|ZP_17362620.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-2]
gi|423412334|ref|ZP_17389454.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG3O-2]
gi|423425997|ref|ZP_17403028.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-2]
gi|423431881|ref|ZP_17408885.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG4O-1]
gi|423437316|ref|ZP_17414297.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X12-1]
gi|423503461|ref|ZP_17480053.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HD73]
gi|423528278|ref|ZP_17504723.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB1-1]
gi|423561733|ref|ZP_17538009.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A1]
gi|423582071|ref|ZP_17558182.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD014]
gi|423585730|ref|ZP_17561817.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD045]
gi|423628954|ref|ZP_17604703.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD154]
gi|423641058|ref|ZP_17616676.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD166]
gi|423656720|ref|ZP_17632019.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD200]
gi|434376965|ref|YP_006611609.1| GTPase RsgA [Bacillus thuringiensis HD-789]
gi|449090804|ref|YP_007423245.1| ribosome-associated GTPase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452200300|ref|YP_007480381.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|38257409|sp|Q819U6.1|RSGA_BACCR RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|29897505|gb|AAP10781.1| GTPase [Bacillus cereus ATCC 14579]
gi|74489304|gb|EAO52757.1| GTPase [Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|206734112|gb|EDZ51283.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AH1134]
gi|218160906|gb|ACK60898.1| conserved hypothetical protein TIGR00157 [Bacillus cereus B4264]
gi|218546002|gb|ACK98396.1| conserved hypothetical protein TIGR00157 [Bacillus cereus G9842]
gi|228591581|gb|EEK49430.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 10876]
gi|228631409|gb|EEK88043.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1550]
gi|228637065|gb|EEK93524.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST24]
gi|228654374|gb|EEL10239.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-Cer4]
gi|228672108|gb|EEL27399.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-15]
gi|228702160|gb|EEL54636.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock4-2]
gi|228723795|gb|EEL75150.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH676]
gi|228779288|gb|EEM27545.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis Bt407]
gi|228785903|gb|EEM33906.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792909|gb|EEM40467.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228799593|gb|EEM46546.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805458|gb|EEM52049.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818785|gb|EEM64851.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228837044|gb|EEM82385.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228857263|gb|EEN01767.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 4222]
gi|296325408|gb|ADH08336.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
gi|326941630|gb|AEA17526.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363625360|gb|EHL76401.1| ribosome small subunit-dependent GTPase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|401084975|gb|EJP93221.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD022]
gi|401104402|gb|EJQ12379.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG3O-2]
gi|401110744|gb|EJQ18643.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-2]
gi|401116637|gb|EJQ24475.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG4O-1]
gi|401120471|gb|EJQ28267.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X12-1]
gi|401201990|gb|EJR08855.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A1]
gi|401212950|gb|EJR19691.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD014]
gi|401233076|gb|EJR39572.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD045]
gi|401268499|gb|EJR74547.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD154]
gi|401280119|gb|EJR86041.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD166]
gi|401290461|gb|EJR96155.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD200]
gi|401635420|gb|EJS53175.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-2]
gi|401793449|gb|AFQ19488.1| GTPase RsgA [Bacillus thuringiensis HD-771]
gi|401875522|gb|AFQ27689.1| GTPase RsgA [Bacillus thuringiensis HD-789]
gi|402451941|gb|EJV83760.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB1-1]
gi|402459682|gb|EJV91419.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HD73]
gi|409175364|gb|AFV19669.1| putative ribosome biogenesis GTPase RsgA [Bacillus thuringiensis
Bt407]
gi|449024561|gb|AGE79724.1| ribosome-associated GTPase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452105693|gb|AGG02633.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 293
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 157/296 (53%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|451818114|ref|YP_007454315.1| putative ribosome biogenesis GTPase RsgA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784093|gb|AGF55061.1| putative ribosome biogenesis GTPase RsgA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 290
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 149/284 (52%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I+ +G+IE++ +R ++++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDDV---TIEIEKGKGVIEDIHKRKSQLVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV +E K R++ GYE ++ + +
Sbjct: 81 VKNPDINFDLLNKFLILCEYNNIEVVVCLNKIDLVSDEEREEIKKRINDIGYEVVYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D L+++++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 KGIGIDGLVEKIKGNITVLCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
G+VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGKVSEKLGRGKHTTRHSELIDVS-DGYIVDTPGFSTLEIKDLMDKNSLKYCFPEFT 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQYYFQL 303
E KC F C H EPGCV+K GD +Y+Y F +
Sbjct: 238 EY-----NDKCKFRGCFHYKEPGCVLKEAVENGDINKYRYEFYV 276
>gi|321315344|ref|YP_004207631.1| GTPase RsgA [Bacillus subtilis BSn5]
gi|320021618|gb|ADV96604.1| GTPase RsgA [Bacillus subtilis BSn5]
Length = 298
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|423649724|ref|ZP_17625294.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD169]
gi|401283004|gb|EJR88901.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD169]
Length = 293
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 157/296 (53%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|394993916|ref|ZP_10386655.1| GTPase RsgA [Bacillus sp. 916]
gi|393805240|gb|EJD66620.1| GTPase RsgA [Bacillus sp. 916]
Length = 296
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 153/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|16078641|ref|NP_389460.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309453|ref|ZP_03591300.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313778|ref|ZP_03595583.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318702|ref|ZP_03599996.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322973|ref|ZP_03604267.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402775823|ref|YP_006629767.1| GTPase [Bacillus subtilis QB928]
gi|418033275|ref|ZP_12671752.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|430758999|ref|YP_007209720.1| GTPase EngC [Bacillus subtilis subsp. subtilis str. BSP1]
gi|452913893|ref|ZP_21962520.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis
MB73/2]
gi|38257357|sp|O34530.1|RSGA_BACSU RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|2337807|emb|CAA74251.1| YloQ protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633950|emb|CAB13451.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469423|gb|EHA29599.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481005|gb|AFQ57514.1| GTPase involved in ribosome and sacculusmorphogenesis [Bacillus
subtilis QB928]
gi|407958985|dbj|BAM52225.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|407964562|dbj|BAM57801.1| ribosome-associated GTPase [Bacillus subtilis BEST7003]
gi|430023519|gb|AGA24125.1| GTPase EngC [Bacillus subtilis subsp. subtilis str. BSP1]
gi|452116313|gb|EME06708.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis
MB73/2]
Length = 298
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|423511895|ref|ZP_17488426.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-1]
gi|402450156|gb|EJV81990.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-1]
Length = 293
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKIDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLAEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|56553848|pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 38 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 95
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 96 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 156 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 198
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 199 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 252
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 253 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 304
>gi|228987004|ref|ZP_04147130.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229157437|ref|ZP_04285515.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 4342]
gi|228626164|gb|EEK82913.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 4342]
gi|228772782|gb|EEM21222.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 293
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ +++ + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIEIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|228909686|ref|ZP_04073509.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 200]
gi|228849975|gb|EEM94806.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 200]
Length = 293
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYAEDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|225569228|ref|ZP_03778253.1| hypothetical protein CLOHYLEM_05310 [Clostridium hylemonae DSM
15053]
gi|225162027|gb|EEG74646.1| hypothetical protein CLOHYLEM_05310 [Clostridium hylemonae DSM
15053]
Length = 292
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 146/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + + R G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDDVEIEVLSESGREGNIEKILPRRNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES GIP+ L NK ++ + + K GY LF S
Sbjct: 85 IARPSPHFNLLDRFLVMMESKGIPVILCFNKEDIATDPQVKELKEIYADCGYPLLFTSAR 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 145 LGQNIDKVREVLKGRTTAVAGPSGVGKSSLINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +STK RGKHTTRH L P+ Y+ DTPGF+ + K+ L Q FPE
Sbjct: 183 NMETGAISTKIERGKHTTRHTELFPVGEDAYIMDTPGFSSLYVNDFEKEELKQYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A C F+ C H+ EPGC VK ++ RY+ Y + +E++ + +
Sbjct: 241 ---APFEGTCRFHGCDHIHEPGCGVKEAFDKGLIHSVRYKNYVDMYEELKKKRRY 292
>gi|346306743|ref|ZP_08848897.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
4_6_53AFAA]
gi|345908101|gb|EGX77769.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
4_6_53AFAA]
Length = 292
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 149/292 (51%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + + V++ G I N+F+R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDKKKPLVGDDVEIEVLSEVEKTGSIINIFERKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV ++ IP+ L NK ++ EE L+ G + +F S +
Sbjct: 85 AAKPSPHFNLLDRFLVMMQTKEIPVILCFNKEDIASEEKLSELAEIYEKCGCQLIFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +++L + L +TT I GPSGVGKSS+IN L +P A
Sbjct: 145 EEKNMETLRRMLEGKTTAIAGPSGVGKSSIINFL--NPKA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S K RGKHTTRH L + Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGSISRKIERGKHTTRHSELFMIGEDSYIMDTPGFSSLYVNDFEKEELKYYFPEF-- 240
Query: 266 MLKANEP--AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EP +C FN C H+ EPGC VK E RY+ Y +L +E++
Sbjct: 241 -----EPYEGQCRFNGCDHIHEPGCAVKEAVEKGKIHAVRYEDYKELYEELK 287
>gi|210622420|ref|ZP_03293152.1| hypothetical protein CLOHIR_01100 [Clostridium hiranonis DSM 13275]
gi|210154236|gb|EEA85242.1| hypothetical protein CLOHIR_01100 [Clostridium hiranonis DSM 13275]
Length = 293
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 152/291 (52%), Gaps = 37/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +D +++G++E + +R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDNVEISIVDEENKKGVVETIEERETELVRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + + K++L D+ L+ GY+ + S E
Sbjct: 85 VKDPKPNLSLLDRFIVHAERENLEIVIIFTKMDL-DDGSLDELVEIYEKAGYKVIPVSSE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + L+ T V GPSGVGKSSL+N +D F+
Sbjct: 144 KHINIDKVKEELKGNTVVFAGPSGVGKSSLLN------------QIDESFQ--------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS K GRG+HTTRH LL L GG +ADTPGF+ L + + L + F E
Sbjct: 183 -LKTGTVSEKIGRGRHTTRHAELLKLECGGIVADTPGFSSLELDGIDEMELKEYFIEF-- 239
Query: 266 MLKANEPAKCSFNN-CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
++ +C F + C+H EP C VK E RY+ Y QLL+EIR
Sbjct: 240 ----DKYDECKFGSKCVHENEPACDVKEAVENGEISKQRYESYLQLLNEIR 286
>gi|423389832|ref|ZP_17367058.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
gi|401641923|gb|EJS59640.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
Length = 293
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|229092904|ref|ZP_04224038.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-42]
gi|228690526|gb|EEL44309.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-42]
Length = 293
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLKVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|385264704|ref|ZP_10042791.1| ribosome-associated GTPase [Bacillus sp. 5B6]
gi|385149200|gb|EIF13137.1| ribosome-associated GTPase [Bacillus sp. 5B6]
Length = 296
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 153/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQGIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|42782953|ref|NP_980200.1| ribosome-associated GTPase [Bacillus cereus ATCC 10987]
gi|52141627|ref|YP_085202.1| ribosome-associated GTPase [Bacillus cereus E33L]
gi|206976743|ref|ZP_03237647.1| conserved hypothetical protein TIGR00157 [Bacillus cereus H3081.97]
gi|217961281|ref|YP_002339849.1| ribosome-associated GTPase [Bacillus cereus AH187]
gi|222097306|ref|YP_002531363.1| ribosome-associated gtpase [Bacillus cereus Q1]
gi|228916498|ref|ZP_04080064.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229140507|ref|ZP_04269062.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST26]
gi|229197972|ref|ZP_04324686.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1293]
gi|301055352|ref|YP_003793563.1| ribosome small subunit-dependent GTPase A [Bacillus cereus biovar
anthracis str. CI]
gi|375285784|ref|YP_005106223.1| hypothetical protein BCN_3690 [Bacillus cereus NC7401]
gi|384181675|ref|YP_005567437.1| GTPase RsgA [Bacillus thuringiensis serovar finitimus YBT-020]
gi|402556017|ref|YP_006597288.1| GTPase RsgA [Bacillus cereus FRI-35]
gi|423353563|ref|ZP_17331190.1| ribosome small subunit-dependent GTPase A [Bacillus cereus IS075]
gi|423374342|ref|ZP_17351680.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AND1407]
gi|423550390|ref|ZP_17526717.1| ribosome small subunit-dependent GTPase A [Bacillus cereus ISP3191]
gi|423567244|ref|ZP_17543491.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A12]
gi|423574533|ref|ZP_17550652.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-D12]
gi|423604512|ref|ZP_17580405.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD102]
gi|56749072|sp|Q732K9.1|RSGA_BACC1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|42738880|gb|AAS42808.1| conserved hypothetical protein TIGR00157 [Bacillus cereus ATCC
10987]
gi|51975096|gb|AAU16646.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|206745053|gb|EDZ56456.1| conserved hypothetical protein TIGR00157 [Bacillus cereus H3081.97]
gi|217064337|gb|ACJ78587.1| conserved hypothetical protein TIGR00157 [Bacillus cereus AH187]
gi|221241364|gb|ACM14074.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585451|gb|EEK43555.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1293]
gi|228643068|gb|EEK99344.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST26]
gi|228843077|gb|EEM88159.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377521|gb|ADK06425.1| ribosome small subunit-dependent GTPase A [Bacillus cereus biovar
anthracis str. CI]
gi|324327759|gb|ADY23019.1| GTPase RsgA [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354311|dbj|BAL19483.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089376|gb|EJP97547.1| ribosome small subunit-dependent GTPase A [Bacillus cereus IS075]
gi|401094254|gb|EJQ02336.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AND1407]
gi|401190006|gb|EJQ97056.1| ribosome small subunit-dependent GTPase A [Bacillus cereus ISP3191]
gi|401212058|gb|EJR18804.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-D12]
gi|401214332|gb|EJR21062.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A12]
gi|401245132|gb|EJR51490.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD102]
gi|401797227|gb|AFQ11086.1| GTPase RsgA [Bacillus cereus FRI-35]
Length = 293
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|423522309|ref|ZP_17498782.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA4-10]
gi|401175003|gb|EJQ82206.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA4-10]
Length = 293
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLAEPKCAVKAAVEEGKIAEYRYKNYKQFVEEIRERK 290
>gi|229013045|ref|ZP_04170210.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides DSM 2048]
gi|229061464|ref|ZP_04198809.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH603]
gi|229168601|ref|ZP_04296324.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH621]
gi|423452838|ref|ZP_17429691.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X1-1]
gi|423470075|ref|ZP_17446819.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-2]
gi|423489037|ref|ZP_17465719.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BtB2-4]
gi|423494762|ref|ZP_17471406.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER057]
gi|423498446|ref|ZP_17475063.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER074]
gi|423558576|ref|ZP_17534878.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MC67]
gi|423592143|ref|ZP_17568174.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD048]
gi|423598828|ref|ZP_17574828.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD078]
gi|423661299|ref|ZP_17636468.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM022]
gi|423669435|ref|ZP_17644464.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM034]
gi|423674386|ref|ZP_17649325.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM062]
gi|228615007|gb|EEK72109.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH621]
gi|228717887|gb|EEL69535.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH603]
gi|228748299|gb|EEL98159.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides DSM 2048]
gi|401139397|gb|EJQ46959.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X1-1]
gi|401150855|gb|EJQ58307.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER057]
gi|401160495|gb|EJQ67873.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER074]
gi|401191844|gb|EJQ98866.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MC67]
gi|401232276|gb|EJR38778.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD048]
gi|401237098|gb|EJR43555.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD078]
gi|401298562|gb|EJS04162.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM034]
gi|401301340|gb|EJS06929.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM022]
gi|401309937|gb|EJS15270.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM062]
gi|402432285|gb|EJV64344.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BtB2-4]
gi|402437327|gb|EJV69351.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-2]
Length = 293
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLAEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|229019059|ref|ZP_04175897.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1273]
gi|229025303|ref|ZP_04181722.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1272]
gi|228735994|gb|EEL86570.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1272]
gi|228742227|gb|EEL92389.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1273]
Length = 293
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|163941599|ref|YP_001646483.1| ribosome-associated GTPase [Bacillus weihenstephanensis KBAB4]
gi|229134669|ref|ZP_04263478.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST196]
gi|423518551|ref|ZP_17495032.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-4]
gi|163863796|gb|ABY44855.1| ribosome small subunit-dependent GTPase A [Bacillus
weihenstephanensis KBAB4]
gi|228648715|gb|EEL04741.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST196]
gi|401160759|gb|EJQ68134.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-4]
Length = 293
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLAEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|336436834|ref|ZP_08616544.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336006653|gb|EGN36686.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 299
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 148/295 (50%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K + LVGD+V + +D ++ G I V R E++ P VAN+D L++F+
Sbjct: 32 CKARGVFRKEKMKPLVGDEVEIEVLDETEKTGNIIQVLPRKNELIRPAVANIDQALVVFA 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFLV E IP+ L NK +L +E+ L ++ GY +F S
Sbjct: 92 VTDPKPHYNLLDRFLVMMERKEIPVVLCFNKQDLSEEKELQELEAVYGPCGYPVIFTSAR 151
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + LR +TT I GPSGVGKSSLIN L+ DV
Sbjct: 152 RQENIEQVKELLRGKTTTIAGPSGVGKSSLINLLQ--------PDV-------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G Y+ DTPGF+ + K+ L FPE
Sbjct: 190 RMETGSISKKIARGKHTTRHSELILVEKGTYIIDTPGFSSLYVNDFEKEELKAYFPEFLP 249
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+C FN C H+ EPGC VK E RYQ Y ++ E++ ++ +
Sbjct: 250 F-----EGQCRFNGCSHVHEPGCAVKEAVENGKIHPIRYQDYAEMYRELQEKKRY 299
>gi|188587599|ref|YP_001920567.1| ribosome-associated GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251778398|ref|ZP_04821318.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|254766359|sp|B2V4B8.1|RSGA_CLOBA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|188497880|gb|ACD51016.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E3
str. Alaska E43]
gi|243082713|gb|EES48603.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 290
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 39/290 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V+ I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVI---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTDKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + ++ K+ L FPE +
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMEKEELKYCFPEFE 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E NE C + CLH EP C +K D E RY++Y + L+EI
Sbjct: 238 E---HNES--CKYRGCLHNKEPKCAIKQDVEDGKINKYRYEFYVKTLEEI 282
>gi|403234844|ref|ZP_10913430.1| GTPase RsgA [Bacillus sp. 10403023]
Length = 294
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 156/305 (51%), Gaps = 40/305 (13%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++ G + C R + +K K LVGD VV + + D G I V +R E++ PP++N
Sbjct: 17 HNEDGEVIQCRGRGVFRKNKVTPLVGDNVVFQAENETD--GYILEVLERKNELVRPPISN 74
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD +L+FS +P P L RFLV ES I + ++K +L+ ++ + + +
Sbjct: 75 VDQAILVFSAIKPDFSPLLLDRFLVLVESNDIKPIICISKTDLISDDAFKEIQQYANMYK 134
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ + S + + GLD L+ L +Q +V G SGVGKSSL+N LR
Sbjct: 135 EIGYQVILTSTKEREGLDKLMPLLDNQISVFAGQSGVGKSSLLNTLR------------- 181
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
P L + + E+S+ GRGKHTTRHV L+ + G G +ADTPGF+ L +
Sbjct: 182 ---PDL------ELKTNEISSSLGRGKHTTRHVELIEV-GNGLVADTPGFSSLEFLTIEL 231
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ L+ FPEI + A C F C H+ EP C V+ E RY +Y +E
Sbjct: 232 EELSYCFPEI-----YDAGANCKFRGCTHISEPKCAVRQGVEDGSIEQFRYDHYVSFYEE 286
Query: 307 IRIRE 311
I+ R+
Sbjct: 287 IKDRK 291
>gi|229071359|ref|ZP_04204582.1| ribosome biogenesis GTPase rsgA [Bacillus cereus F65185]
gi|228711813|gb|EEL63765.1| ribosome biogenesis GTPase rsgA [Bacillus cereus F65185]
Length = 293
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYVVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITENRYKNYKQFVEEIRERK 290
>gi|166032712|ref|ZP_02235541.1| hypothetical protein DORFOR_02427 [Dorea formicigenerans ATCC
27755]
gi|166027069|gb|EDR45826.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
ATCC 27755]
Length = 292
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 150/290 (51%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + + V++ G I N+F+R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDKKKPLVGDDVEIEVLSEVEKTGSIINIFERKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV ++ IP+ L NK ++ EE L+ G + +F S +
Sbjct: 85 AAKPSPHFNLLDRFLVMMQTKEIPVILCFNKEDIASEEKLSELAEIYEKCGCQLIFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +++L + L +TT I GPSGVGKSS+IN L +P A
Sbjct: 145 EEKNMETLRRMLEGKTTAIAGPSGVGKSSIINLL--NPKA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S K RGKHTTRH L + Y+ DTPGF+ + K+ L FPE E
Sbjct: 183 NMETGSISRKIERGKHTTRHSELFMIGEDSYIMDTPGFSSLYVNDFEKEELKYYFPEF-E 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+ + +C FN C H+ EPGC VK E RY+ Y +L +E++
Sbjct: 242 LYE----GQCRFNGCDHIHEPGCAVKEAVEKGKIHAVRYEDYKELYEELK 287
>gi|423367905|ref|ZP_17345337.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD142]
gi|401082766|gb|EJP91031.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD142]
Length = 293
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLAEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|229031491|ref|ZP_04187491.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1271]
gi|228729780|gb|EEL80760.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1271]
Length = 307
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 153/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 39 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + ++ + GY+ LF
Sbjct: 97 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDERMRETVESYANDYREMGYDVLFT 156
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 157 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 197
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 198 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 253
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 254 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 304
>gi|423395838|ref|ZP_17373039.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|423406714|ref|ZP_17383863.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
gi|401653580|gb|EJS71124.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|401660004|gb|EJS77487.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
Length = 293
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKTTVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|229162797|ref|ZP_04290754.1| ribosome biogenesis GTPase rsgA [Bacillus cereus R309803]
gi|228620679|gb|EEK77548.1| ribosome biogenesis GTPase rsgA [Bacillus cereus R309803]
Length = 293
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + +F R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEIFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|423418232|ref|ZP_17395321.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
gi|401106505|gb|EJQ14466.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
Length = 293
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDHVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|134299571|ref|YP_001113067.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
reducens MI-1]
gi|134052271|gb|ABO50242.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
reducens MI-1]
Length = 292
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 146/276 (52%), Gaps = 36/276 (13%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
LVGD+V+V + G I+ V R TE+ P VAN+D +++F+++ P+ L R
Sbjct: 39 ALVGDRVMVTPVR--QNTGRIDEVMPRKTELFRPAVANIDQAVIVFAVENPEPNMTLLDR 96
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FLV AE+ + + LNK +L+ + W GY + S + G++ L Q L
Sbjct: 97 FLVLAENAEVLPVVCLNKGDLLTSRRDHEWLKLYKRIGYPTIITSTKLGEGINELRQLLI 156
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
+TTV GPSGVGKSSL+NA+ +P L + + G++S K R
Sbjct: 157 GKTTVFAGPSGVGKSSLLNAI----------------QPGL------ELKTGDISHKLKR 194
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278
GKHTTRHV LLPL+ GGY+ D+PGF+ L ++ K+ LA FPE + A C FN
Sbjct: 195 GKHTTRHVELLPLNKGGYVVDSPGFSSLDLPQMNKEDLAYYFPEFTGFI-----ADCKFN 249
Query: 279 NCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
CLH EP C VK + ERYQ Y L+E+
Sbjct: 250 GCLHHREPQCAVKDALDAGLINKERYQNYLLFLEEV 285
>gi|30263864|ref|NP_846241.1| ribosome-associated GTPase [Bacillus anthracis str. Ames]
gi|47529290|ref|YP_020639.1| ribosome-associated GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186711|ref|YP_029963.1| ribosome-associated GTPase [Bacillus anthracis str. Sterne]
gi|49479408|ref|YP_037922.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321188|ref|ZP_00394147.1| COG1162: Predicted GTPases [Bacillus anthracis str. A2012]
gi|165872283|ref|ZP_02216920.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0488]
gi|167636446|ref|ZP_02394745.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0442]
gi|167641118|ref|ZP_02399373.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0193]
gi|170688863|ref|ZP_02880066.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0465]
gi|170708825|ref|ZP_02899261.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0389]
gi|177654904|ref|ZP_02936621.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0174]
gi|190565958|ref|ZP_03018877.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196035864|ref|ZP_03103266.1| conserved hypothetical protein TIGR00157 [Bacillus cereus W]
gi|196038645|ref|ZP_03105953.1| conserved hypothetical protein TIGR00157 [Bacillus cereus
NVH0597-99]
gi|196047430|ref|ZP_03114642.1| conserved hypothetical protein TIGR00157 [Bacillus cereus 03BB108]
gi|218904991|ref|YP_002452825.1| ribosome-associated GTPase [Bacillus cereus AH820]
gi|225865842|ref|YP_002751220.1| ribosome small subunit-dependent GTPase A [Bacillus cereus 03BB102]
gi|227813231|ref|YP_002813240.1| ribosome-associated GTPase [Bacillus anthracis str. CDC 684]
gi|228928909|ref|ZP_04091941.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935175|ref|ZP_04098002.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947580|ref|ZP_04109870.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123375|ref|ZP_04252579.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 95/8201]
gi|229186101|ref|ZP_04313270.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BGSC 6E1]
gi|229601599|ref|YP_002868098.1| ribosome-associated GTPase [Bacillus anthracis str. A0248]
gi|254683430|ref|ZP_05147290.1| ribosome-associated GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254721393|ref|ZP_05183182.1| ribosome-associated GTPase [Bacillus anthracis str. A1055]
gi|254735900|ref|ZP_05193606.1| ribosome-associated GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|254739852|ref|ZP_05197545.1| ribosome-associated GTPase [Bacillus anthracis str. Kruger B]
gi|254751042|ref|ZP_05203081.1| ribosome-associated GTPase [Bacillus anthracis str. Vollum]
gi|254756707|ref|ZP_05208736.1| ribosome-associated GTPase [Bacillus anthracis str. Australia 94]
gi|376267757|ref|YP_005120469.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus cereus
F837/76]
gi|386737683|ref|YP_006210864.1| GTPase engC [Bacillus anthracis str. H9401]
gi|421507402|ref|ZP_15954322.1| GTPase RsgA [Bacillus anthracis str. UR-1]
gi|421639617|ref|ZP_16080208.1| GTPase RsgA [Bacillus anthracis str. BF1]
gi|38257419|sp|Q81WH7.1|RSGA_BACAN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|30258508|gb|AAP27727.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
Ames]
gi|47504438|gb|AAT33114.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180638|gb|AAT56014.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Sterne]
gi|49330964|gb|AAT61610.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164711959|gb|EDR17499.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0488]
gi|167510898|gb|EDR86289.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0193]
gi|167528188|gb|EDR90975.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0442]
gi|170126310|gb|EDS95201.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0389]
gi|170667218|gb|EDT17978.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0465]
gi|172080415|gb|EDT65502.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0174]
gi|190562877|gb|EDV16843.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991513|gb|EDX55479.1| conserved hypothetical protein TIGR00157 [Bacillus cereus W]
gi|196021738|gb|EDX60433.1| conserved hypothetical protein TIGR00157 [Bacillus cereus 03BB108]
gi|196030368|gb|EDX68967.1| conserved hypothetical protein TIGR00157 [Bacillus cereus
NVH0597-99]
gi|218536678|gb|ACK89076.1| conserved hypothetical protein TIGR00157 [Bacillus cereus AH820]
gi|225788967|gb|ACO29184.1| ribosome small subunit-dependent GTPase A [Bacillus cereus 03BB102]
gi|227002704|gb|ACP12447.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
CDC 684]
gi|228597277|gb|EEK54928.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BGSC 6E1]
gi|228660151|gb|EEL15787.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 95/8201]
gi|228812100|gb|EEM58431.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824540|gb|EEM70345.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830716|gb|EEM76321.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229266007|gb|ACQ47644.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
A0248]
gi|364513557|gb|AEW56956.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus cereus
F837/76]
gi|384387535|gb|AFH85196.1| GTPase engC [Bacillus anthracis str. H9401]
gi|401822536|gb|EJT21686.1| GTPase RsgA [Bacillus anthracis str. UR-1]
gi|403393282|gb|EJY90527.1| GTPase RsgA [Bacillus anthracis str. BF1]
Length = 293
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|449094270|ref|YP_007426761.1| ribosome-associated GTPase [Bacillus subtilis XF-1]
gi|449028185|gb|AGE63424.1| ribosome-associated GTPase [Bacillus subtilis XF-1]
Length = 298
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDRIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|212639611|ref|YP_002316131.1| ribosome-associated GTPase [Anoxybacillus flavithermus WK1]
gi|212561091|gb|ACJ34146.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 329
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 154/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +R G I +VF+R E++ PP+AN+D +L+FS
Sbjct: 61 CRGRGVFRKRKVTPLVGDYVSFQVEN--EREGYILDVFERKNELVRPPIANIDQAILVFS 118
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P P L RFLV E+ I + ++K++LVD+E + + GY+ L
Sbjct: 119 AVEPDFSPGLLDRFLVLIEAKNIRPMIVVSKMDLVDDETKPRIEQYIRDYRQIGYDVLEV 178
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+++ G+D+LL L + +V G SGVGKSSL+NALR P L K
Sbjct: 179 SVKTRAGVDALLPYLEGKVSVFAGQSGVGKSSLLNALR----------------PGLQLK 222
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S GRGKHTTRHV + + GGG++ADTPGF+ ++ + L FPE
Sbjct: 223 ------TGDISHHLGRGKHTTRHVEFIEI-GGGFVADTPGFSALEFDEIELEQLPLCFPE 275
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIRIRE 311
A C F C H EP C VK GD RY++Y + EI+ R+
Sbjct: 276 F-----VARSADCKFRGCTHTAEPKCAVKEALASGDIPSYRYEHYVSFIKEIKERK 326
>gi|118479083|ref|YP_896234.1| ribosome-associated GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418308|gb|ABK86727.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 307
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 39 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 97 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 156
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 157 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 197
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 198 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 253
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 254 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 304
>gi|308173541|ref|YP_003920246.1| GTPase [Bacillus amyloliquefaciens DSM 7]
gi|307606405|emb|CBI42776.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens DSM 7]
Length = 296
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 155/297 (52%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANAIHPIICITKMDLASDGESKEKILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK GD + RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGDIQPYRYEHYKEFMQEIKERK 293
>gi|229174527|ref|ZP_04302059.1| ribosome biogenesis GTPase rsgA [Bacillus cereus MM3]
gi|423401297|ref|ZP_17378470.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-2]
gi|423457956|ref|ZP_17434753.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X2-1]
gi|423477999|ref|ZP_17454714.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-1]
gi|228609087|gb|EEK66377.1| ribosome biogenesis GTPase rsgA [Bacillus cereus MM3]
gi|401148340|gb|EJQ55833.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X2-1]
gi|401654287|gb|EJS71830.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-2]
gi|402428161|gb|EJV60258.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-1]
Length = 293
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 156/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKTAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|347532277|ref|YP_004839040.1| GTPase [Roseburia hominis A2-183]
gi|345502425|gb|AEN97108.1| GTPase [Roseburia hominis A2-183]
Length = 296
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D G IE + R ++ P VAN+D L++F+
Sbjct: 29 CKAKGIFRNQKIKPLVGDNVTIAVLDEEQMLGNIEEILPRENALIRPAVANIDQALVIFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK L RFL+ E +P+T+ NK +L+ E L+ + GY ++ S
Sbjct: 89 AAKPKPNFNLLDRFLIMMEYQKVPVTICFNKCDLLTGEELHAFSDVYEQCGYPVVYTSAR 148
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D LL+RL + T + GPSGVGKSSLIN L+
Sbjct: 149 EQRGIDVLLERLEGKVTSVAGPSGVGKSSLINCLQPE----------------------R 186
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RG+HTTRH ++P+ Y+ DTPGF+ + + K+ L +PE +E
Sbjct: 187 QMETGAISRKIERGRHTTRHSEIIPIKEQTYIMDTPGFSTLDIPGLEKEDLWWYYPEFEE 246
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
EP C F C H+GEP C VK E RY+ Y QL E++ ++++
Sbjct: 247 Y----EP-NCRFKGCSHIGEPDCGVKEAVEAGKISRLRYENYRQLYQELKEQKKY 296
>gi|357012406|ref|ZP_09077405.1| RsgA [Paenibacillus elgii B69]
Length = 303
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 155/307 (50%), Gaps = 44/307 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++T + C R + KK LVGD+VV G + + G ++ + RS+ ++ PPVAN
Sbjct: 20 DEQTTKAVQCRARGIFKKRGISPLVGDRVVYGLTE--NGEGTVDEILPRSSVLIRPPVAN 77
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--------EVLNTW 128
+D +L+FS+ +P L L +FLV ES G+ + L K +L+ E E L
Sbjct: 78 IDLAVLVFSVTEPALNLPLLDKFLVHTESAGLDTLICLTKHDLLSEGSSPDGVSEELAPV 137
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ GY L S + +G+ + RL + V+ G SGVGKSSL+NA+ P S
Sbjct: 138 IRLYESIGYPMLVTSAKEGIGVSEVFGRLAGRIGVVAGQSGVGKSSLLNAM--VPGLSLE 195
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ E+S K GRGKHTTRHV L+ L GG +ADTPGF+Q
Sbjct: 196 TN--------------------EISMKLGRGKHTTRHVELIRLQNGGLIADTPGFSQLDF 235
Query: 249 LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYF 301
L+V + L+ F E A A C F CLHL EPGC V+ E RY +Y
Sbjct: 236 LQVDAEGLSGAFREF-----APYAAACRFRGCLHLHEPGCKVQEAKEAGHIAASRYNHYI 290
Query: 302 QLLDEIR 308
Q L+EI+
Sbjct: 291 QFLNEIK 297
>gi|433446074|ref|ZP_20410205.1| ribosome small subunit-dependent GTPase A [Anoxybacillus
flavithermus TNO-09.006]
gi|432000819|gb|ELK21711.1| ribosome small subunit-dependent GTPase A [Anoxybacillus
flavithermus TNO-09.006]
Length = 293
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 154/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + +R G I +VF+R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRKRKVTPLVGDYVSFQAEN--EREGYILDVFERKNELVRPPIANIDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P P L RFLV E+ I + ++K++LVD++ + + GYE
Sbjct: 83 AVEPDFSPGLLDRFLVLIEAKDIRPLIVVSKMDLVDDDTKPRIEQYIRDYRQIGYEVFEV 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+++ G+D+LL + +V G SGVGKSSL+NALR +
Sbjct: 143 SVKTRAGIDALLPYFEGKVSVFAGQSGVGKSSLLNALRPNLQL----------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G++S GRGKHTTRHV L+ + GGG++ADTPGF+ + + L FPE
Sbjct: 186 -----KTGDISHHLGRGKHTTRHVELIEI-GGGFVADTPGFSALEFDDIELEQLPLCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIRE 311
+ + C F C H EP C VK GD RY++Y ++EI+ R+
Sbjct: 240 F-----VTKSSDCKFRGCTHTAEPKCAVKEALASGDIPPYRYEHYMSFIEEIKERK 290
>gi|384265160|ref|YP_005420867.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898157|ref|YP_006328453.1| Putative ribosome biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|380498513|emb|CCG49551.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387172267|gb|AFJ61728.1| Putative ribosome biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 296
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQGIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + + L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEDELGSTFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI+E+ A C F CLHL EP C VK E RY++Y + + EI+ R+
Sbjct: 242 EIREI-----SASCKFRGCLHLKEPKCAVKQAVEEGEIQPYRYEHYKEFMQEIKERK 293
>gi|187933227|ref|YP_001885420.1| ribosome-associated GTPase [Clostridium botulinum B str. Eklund
17B]
gi|254766360|sp|B2THS4.1|RSGA_CLOBB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|187721380|gb|ACD22601.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum B
str. Eklund 17B]
Length = 290
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 39/290 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD VV I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVV---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPEIK 264
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + + K+ L FPE +
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMNKEDLKYCFPEFE 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E NE C + CLH EP C VK E RY++Y + L+EI
Sbjct: 238 E---HNES--CKYRGCLHNKEPKCTVKQAVEEGKINKYRYEFYIKTLEEI 282
>gi|443632753|ref|ZP_21116932.1| GTPase RsgA [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347576|gb|ELS61634.1| GTPase RsgA [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 298
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--NKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++++ V+ + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTRDVIQAYAEDYRKIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLTDIIPHFKDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYNHYVEFMTEIKDRK 295
>gi|452991999|emb|CCQ96619.1| GTPase involved in ribosome and sacculus morphogenesis [Clostridium
ultunense Esp]
Length = 299
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 154/293 (52%), Gaps = 42/293 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K + LVGD V S ++ G IE + +R ++ PPVAN+D ++LLFS
Sbjct: 31 CRARGLFRKQGKSPLVGDWVRFESKG--EKEGWIEEISERKNVLIRPPVANMDIVVLLFS 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +P+L L RFL E +P+ + K++LV+E ++WKS T+ GY +
Sbjct: 89 LKEPELNLLLLDRFLAHIEHRRVPILIGFTKIDLVEE---HSWKSVGETYEKIGYPIVAT 145
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + G+D + L+ +T V G SGVGKSSL+N+L P A
Sbjct: 146 SARTGRGVDEIRLHLQGKTAVFAGQSGVGKSSLLNSL--LPKAL---------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GE+S + GRG+HTTRHV LL + G ++ADTPGF Q L++ L FPE
Sbjct: 188 ----RETGEISRRLGRGRHTTRHVELLSIGQGSFVADTPGFGQLDFLEMDPVELTLCFPE 243
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
I+ +A E C F CLH EPGC V+ ERY++Y L EI+
Sbjct: 244 IRA--RAGE---CRFRECLHHKEPGCAVREAVTEGEIQTERYEHYLIFLSEIK 291
>gi|205373325|ref|ZP_03226129.1| ribosome-associated GTPase [Bacillus coahuilensis m4-4]
Length = 295
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 157/296 (53%), Gaps = 39/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S D+ +R G + + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKKKITPLVGDYVTYES-DF-EREGTVVEIEERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P+ P L RFLV ES GI + + K++L+ E ++ + + GY +
Sbjct: 83 SIEPEFSPSLLNRFLVLVESKGIQPLICITKMDLLTPNGAEKIHQFSEDYRSVGYTVVCT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++K G++ +L L ++ +V G SGVGKSSL+NA+R P L
Sbjct: 143 SSKTKEGVEQILPYLDNKVSVFAGQSGVGKSSLLNAIR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S GRGKHTTRHV L+P+S G++ADTPGF+ ++ + L FP
Sbjct: 184 ---ELKTSTISASLGRGKHTTRHVELIPVSVHGHVADTPGFSSLEFTEIELEDLPFCFP- 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EM+K + C F CLH+ EP C VK E RY+ Y Q DEI+ R+
Sbjct: 240 --EMVKLSH--NCKFRGCLHINEPKCAVKHAVEHAEIPKYRYEDYLQFADEIKDRK 291
>gi|423612078|ref|ZP_17587939.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD107]
gi|401247085|gb|EJR53429.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD107]
Length = 293
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASRY-----CKFRGCTHLVEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|296331153|ref|ZP_06873627.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674309|ref|YP_003865981.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151797|gb|EFG92672.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412553|gb|ADM37672.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 298
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ ++ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTQDAIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPDLGL 190
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 191 K------TNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E++E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 EMRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|350265891|ref|YP_004877198.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598778|gb|AEP86566.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 298
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 152/297 (51%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ ++ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTQDAIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELGL 190
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 191 K------TNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+I+E + + C F CLHL EP C VK E RY +Y + + EI+ R+
Sbjct: 244 DIRE-----KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRK 295
>gi|423615878|ref|ZP_17591712.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD115]
gi|401260415|gb|EJR66588.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD115]
Length = 293
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 153/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMREIVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESISILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYQQFVEEIRERK 290
>gi|423483451|ref|ZP_17460141.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-2]
gi|401141002|gb|EJQ48557.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-2]
Length = 293
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLVEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>gi|307244476|ref|ZP_07526585.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
stomatis DSM 17678]
gi|306492169|gb|EFM64213.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
stomatis DSM 17678]
Length = 299
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 151/298 (50%), Gaps = 40/298 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR + +K LVGD+V + ID D++G IE +++R +E++ PP+ANVD +L+ FS
Sbjct: 25 CKVRGIFRKKGLSPLVGDRVAISIIDEADKKGNIEKIYERKSELVRPPIANVDKVLITFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSV 144
+ +P L RF+V +E + + + L KV+L D +++ S GY+ + SV
Sbjct: 85 VKEPNPNMVLLDRFIVFSEKENLDIRIILTKVDLDEDGSIVDRIVSDYERIGYKVIPVSV 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
E+ G+D + Q L +V G SGVGKSS++NA+ A
Sbjct: 145 ETGQGIDQVRQELEGCISVFAGQSGVGKSSILNAIEPGFKIDTA---------------- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
E+S K GRGKHTTRH L L +ADTPGF+ L + + L + F E
Sbjct: 189 ------EISQKLGRGKHTTRHSELYKLGPNAIVADTPGFSSFELTDIEIEELQEYFIEFA 242
Query: 265 EMLKANEPAKCSFNN-CLHLGEPGCVVKGDWE-------RYQYYFQLLDEI---RIRE 311
+ C F + C+H EP C VK E RY+ Y Q+LDEI +IRE
Sbjct: 243 KF------DGCRFGSKCIHKNEPACAVKEALEVGEIAESRYKSYLQILDEINNLKIRE 294
>gi|89098700|ref|ZP_01171582.1| ribosome-associated GTPase [Bacillus sp. NRRL B-14911]
gi|89086662|gb|EAR65781.1| ribosome-associated GTPase [Bacillus sp. NRRL B-14911]
Length = 293
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D G I V +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDNVVYQADN--DSEGYILEVKERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + ++K++LV+EE + + + GY+ L
Sbjct: 83 AIEPDFSTALLDRFLVLVEFNHIQPVICISKMDLVNEEERMKIEDYAASYRDAGYDVLLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E+ +G+D LL L +V G SGVGKSSL+NALR P D+
Sbjct: 143 SSENGIGIDELLPFLERGISVFAGQSGVGKSSLLNALR--PELELKTDI----------- 189
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S+ GRGKHTTRHV L+ + G G++ADTPGF+ + + L FP+
Sbjct: 190 ---------ISSHLGRGKHTTRHVELIEI-GQGFVADTPGFSSLEFTDIEAEELNFCFPD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+E +A C F CLH+ EP C VK + RY++Y L EI+ R+
Sbjct: 240 IREKSEA-----CKFRACLHISEPKCAVKAAVDNGEIPQYRYEHYKDFLQEIKDRK 290
>gi|153809818|ref|ZP_01962486.1| hypothetical protein RUMOBE_00199 [Ruminococcus obeum ATCC 29174]
gi|149833996|gb|EDM89076.1| ribosome small subunit-dependent GTPase A [Ruminococcus obeum ATCC
29174]
Length = 292
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 143/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K ++ LVGD V + +D ++ G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDNQKPLVGDNVEITILDQQEQTGNLIRILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
++ PK L RFL+ E +P + NK +L EE T GY+ + S
Sbjct: 85 LENPKPNFMLLDRFLIMMEQAEVPAVICFNKKDLASEEETRTLCEIYRNCGYQVILSSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD + + L+ +TTV+ GPSGVGKSSL N L+
Sbjct: 145 EKEGLDEIHRILKGKTTVVAGPSGVGKSSLTNLLQGEVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RG+HTTRH ++P+ +L DTPGF+ L+ + +Q L FPE ++
Sbjct: 186 ---TGEISRKLKRGRHTTRHSQVIPVGEDTFLMDTPGFSSLYLMNMEEQDLKNYFPEFRK 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
C F C H+ EPGC VK E RY+ Y L +E++ + +
Sbjct: 243 Y-----EDTCRFQGCRHIHEPGCRVKEALENGEISRLRYEDYLSLYEELKEKRRY 292
>gi|297544778|ref|YP_003677080.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842553|gb|ADH61069.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 293
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 150/294 (51%), Gaps = 37/294 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +LVGD + I+ DR G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNVTLLVGDIAEIQMIN--DREGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ S GY+ + S
Sbjct: 85 IIRPELNRILLDKMIVLAESNDIEPVVCINKVDLKEDREAFDLVSVYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+D L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIDELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RGKHTTR V LL L GGY+ DTPGF + L + KQ L F E E
Sbjct: 185 --KTGEVSEKLLRGKHTTRSVELLSLDFGGYVLDTPGFTALT-LDIEKQDLRYYFREFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQLLDEIRIREE 312
C F++CLH+ EPGC V+K D RY Y L E++ +E+
Sbjct: 242 F-----QGGCKFSSCLHIQEPGCNVIKAVEEGLIDKNRYVSYISLFKELKEKEK 290
>gi|383787540|ref|YP_005472109.1| ribosome small subunit-dependent GTPase A [Fervidobacterium
pennivorans DSM 9078]
gi|383110387|gb|AFG35990.1| ribosome small subunit-dependent GTPase A [Fervidobacterium
pennivorans DSM 9078]
Length = 295
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 157/296 (53%), Gaps = 39/296 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G +LLC +R KK R +VGD VV + V G++EN+ RS E+ P VANVD
Sbjct: 24 ENGEKLLCKLRGKFKKQGIRPIVGD--VVEFVRVVGNEGVVENILNRSNELKKPSVANVD 81
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ ++++P++ L RF+V E +P+ +ALNKV+L+ EE + ++S ++ Y
Sbjct: 82 QVVIVTTLEKPEVPYDILDRFIVLVEYENLPIVIALNKVDLLSEEQIQKFES-IYGKLYP 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ SV ++GL+ L + L + +V G SGVGKSSL+NAL S+
Sbjct: 141 IIKTSVTQRIGLEDLKRYLTGRVSVFAGMSGVGKSSLLNALESTLRL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R GE+S K RGKHTT LL LS GG++ DTPGF + + L +
Sbjct: 188 ---------RTGEISEKLERGKHTTTAAELLSLSFGGWVVDTPGFASLEISHIKPLELRE 238
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
F E E KC F +CLHL EP C VK E RY+ Y + L+E+
Sbjct: 239 LFIEF-------ENDKCFFPDCLHLNEPECYVKKAVEKGKISSTRYESYVKFLNEL 287
>gi|164687796|ref|ZP_02211824.1| hypothetical protein CLOBAR_01440 [Clostridium bartlettii DSM
16795]
gi|164603071|gb|EDQ96536.1| ribosome small subunit-dependent GTPase A [Clostridium bartlettii
DSM 16795]
Length = 293
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +D +++G++E + +R TE++ PP+ANV+ L++F+
Sbjct: 25 CRARGIFRKNKITPLVGDFVKISVVDEDNKKGVVEEIQERKTELVRPPIANVNKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RF+V AE + + + L K++L D+ K+ GY+ + S
Sbjct: 85 VKNPTPHLSLLDRFIVLAERENLEIVIILTKIDLDDDNTFEKIKNIYEPCGYKVIGVSNL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+D T V GPSGVGKSSL+N + S+
Sbjct: 145 ENKNIDKVKEELKDNTVVFAGPSGVGKSSLLNQIDSNFQL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G+VS K RGKHTTRH L L GG +ADTPGF+ +L + L F E ++
Sbjct: 185 --KTGDVSDKIKRGKHTTRHAELFELKFGGMVADTPGFSSLTLDDIEDIDLKDYFIEFED 242
Query: 266 MLKANEPAKCSFNN-CLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIR 308
C F + C+H EP C VK G+ ERY+ Y QLL+EIR
Sbjct: 243 Y------DDCKFGSRCIHQNEPNCAVKEAVENGEIPKERYESYIQLLNEIR 287
>gi|329926571|ref|ZP_08280984.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
gi|328939112|gb|EGG35475.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
Length = 302
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 149/292 (51%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD V+ + + G ++ + RS++++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKKGISPLVGDHVMYSLTE--NGEGTVDEILPRSSQLIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E +G+ + L K +L D+ +VL K + GYE L S
Sbjct: 92 VKEPDLSLHLLDKFLVHIEHSGLEALICLTKQDLADDSDDVLEQVKRQYEEIGYEVLITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G D + RL + +V G SGVGKSSL+NAL P S
Sbjct: 152 SLQGIGTDEVKDRLAGRISVFSGQSGVGKSSLLNALM--PGLS----------------- 192
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 193 ---LETSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSTCFKEF 249
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
A A+C F C H+ EPGC V E RY++Y + E++
Sbjct: 250 -----APYAAECKFRGCSHMQEPGCRVIQAKEDGIILASRYEHYVEFYTEMK 296
>gi|154485077|ref|ZP_02027525.1| hypothetical protein EUBVEN_02800 [Eubacterium ventriosum ATCC
27560]
gi|149734030|gb|EDM50149.1| ribosome small subunit-dependent GTPase A [Eubacterium ventriosum
ATCC 27560]
Length = 294
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 34/289 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + LVGD V+V ID ++G I + +R +++ P VANVD +++F+
Sbjct: 25 CKAKGKFRNKSIKPLVGDNVMVDIIDEEKKKGNISEILERKNQLIRPAVANVDQAMIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E I + NK+++ D++ +N ++ GY+ +F S
Sbjct: 85 VKKPNPNLNLLDRFLVMMEFQNIETIICFNKIDIGDDDYMNQLQTIYQKAGYKVMFASAT 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + L+ ++TV GPSGVGKSS++NAL
Sbjct: 145 KEQGVDKIKKMLKGKSTVFAGPSGVGKSSMLNALTKD----------------------Y 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K GRGKHTTRH + + Y+ DTPGF+ + +TK+ L FPE+ +
Sbjct: 183 KMETGAISEKIGRGKHTTRHSEIFNIDSNSYVFDTPGFSSLFVPGMTKEKLQYCFPEMPQ 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
EP +C F C H+ EP C +K ERY+ Y L E+
Sbjct: 243 Y----EP-ECRFTGCAHINEPDCGIKNALEQGKIARERYENYVLLYKEL 286
>gi|300867395|ref|ZP_07112050.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
gi|300334585|emb|CBN57218.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
Length = 215
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 125/218 (57%), Gaps = 28/218 (12%)
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
SL +L+ + TVI GPSGVGKSSLIN L + N + RVG
Sbjct: 25 SLYSQLKGKITVISGPSGVGKSSLINLL-----------IPNL-----------NLRVGA 62
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271
VS K GRG+HTTRHV L L GGG LADTPGFNQP+ L+ Q LAQ FPEIK+ L
Sbjct: 63 VSGKLGRGRHTTRHVELFELPGGGLLADTPGFNQPT-LECEPQELAQYFPEIKQRLSK-- 119
Query: 272 PAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVG 331
C F++C H EP CVV+GDWERYQ+Y L E +R L+ G E + K
Sbjct: 120 -GSCQFSDCSHRDEPNCVVRGDWERYQHYLDFLAEATVRSH-ALQQLGDA-ESSFKLKSK 176
Query: 332 DMGVQQAEPRLEPKKHRRQSRKRINQSILDELDELDDD 369
G Q+ EP+LE KK+RR +R+ +Q++ + + D+
Sbjct: 177 SDGKQKYEPKLESKKYRRLNRRFEHQTLQQNMSQDHDE 214
>gi|338813392|ref|ZP_08625521.1| ribosome small subunit-dependent GTPase A [Acetonema longum DSM
6540]
gi|337274751|gb|EGO63259.1| ribosome small subunit-dependent GTPase A [Acetonema longum DSM
6540]
Length = 292
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 39/313 (12%)
Query: 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENV 62
VIV+ N KT ++C +R KK + +LVGD+V G + +G+IE +
Sbjct: 5 VIVKAYNSYYYVQDNHKT---IMCTLRGRFKKERFSLLVGDRV--GYEITNEDKGVIEEI 59
Query: 63 FQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
R + ++ P VANVD ++L F+ P + + RFLV AE + + + L +NK++ D
Sbjct: 60 LPRQSMLIRPMVANVDQVVLAFAAANPDINTVLIDRFLVLAELSNLEIVLCINKMDYADN 119
Query: 123 EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
+ +++ + GY L S ++ GLD+L RL D+ T GPSGVGKS+L+NAL+
Sbjct: 120 QEVDSIIALYRNIGYTVLPLSAKTGWGLDALRDRLYDKITAFAGPSGVGKSTLLNALQ-- 177
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
P + A G VS K GRGKHTTR+ LLP + G++ DTPG
Sbjct: 178 PGLALAT--------------------GSVSEKIGRGKHTTRYAELLPFANSGFVVDTPG 217
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWE 295
F+ + ++ + F E +++A C F++C+H+ EP C VK +
Sbjct: 218 FSLAEFNHLEEKHIMHCFREFHPLIEA-----CKFSSCIHIREPQCAVKQAVADGTVSQQ 272
Query: 296 RYQYYFQLLDEIR 308
RY Y +++ EI+
Sbjct: 273 RYDSYQEIVLEIQ 285
>gi|334340854|ref|YP_004545834.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum ruminis
DSM 2154]
gi|334092208|gb|AEG60548.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum ruminis
DSM 2154]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 147/280 (52%), Gaps = 36/280 (12%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
LVGD+V V + ++ G I+ V R+TE+ P VANV+ +L+F++ P+ L R
Sbjct: 39 ALVGDRVKVTPVR--EKTGRIDEVLPRATELFRPAVANVEQAVLVFAVQNPEPNLTLLDR 96
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FLV AES GI + LNK++L+ + W GY + S ++ G+++L Q L
Sbjct: 97 FLVLAESAGIQPLICLNKIDLLSGRREHHWLKLYRRIGYPTVTASSKTGEGVEALRQLLT 156
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
T+V GPSGVGKSSL+NA++ W + GE+S K R
Sbjct: 157 GSTSVFAGPSGVGKSSLLNAVQ-----------PGW-----------QLKTGEISHKLKR 194
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278
GKHTTRHV LL L GGY+ D+PGF+ L ++ ++ L++ FPE++ N C F
Sbjct: 195 GKHTTRHVELLVLPSGGYVVDSPGFSSLDLPEMEREELSRYFPEME-----NFTEDCKFK 249
Query: 279 NCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
CLH EP C VK ERYQ Y L E+ +E
Sbjct: 250 GCLHNQEPQCGVKKAVEQGAIHKERYQNYLSFLQEVMQQE 289
>gi|407474131|ref|YP_006788531.1| ribosome biogenesis GTPase RsgA [Clostridium acidurici 9a]
gi|407050639|gb|AFS78684.1| putative ribosome biogenesis GTPase RsgA [Clostridium acidurici 9a]
Length = 291
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 161/295 (54%), Gaps = 35/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K + VGD+V++ D ++ G +E +F+R+TE++ PPV+NV+ +++F+
Sbjct: 25 CRARGLFRKEKIKPQVGDRVLIRVNDQ-NKTGYVEKIFERTTELIRPPVSNVNQAIIVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L RFL+ A + + + LNK++L EE + GY+ + S +
Sbjct: 84 IKKPDPNLWLLDRFLLLASCQNLDVVICLNKIDLATEEEVKEIYDIYSKSGYKIITTSNK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D + + L+D+ TV GPSGVGKS+L+N++ +P L K
Sbjct: 144 DNIGIDEIREILKDKITVFAGPSGVGKSTLLNSI----------------QPNLKLK--- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+STK+ RGKHTTRH L+ L GG++ DTPGF+ L +T+++L + F +I E
Sbjct: 185 ---TGEISTKTSRGKHTTRHTELIELDKGGFVLDTPGFSSLDLDFLTEETLEEHFHDIHE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A+E C F C H EP C VK E RY Y L EI R+ F
Sbjct: 242 ---ASE--MCKFAGCRHDKEPSCKVKESVESGEISKSRYDNYIMFLKEISERKRF 291
>gi|229104423|ref|ZP_04235092.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-28]
gi|407706320|ref|YP_006829905.1| DUTPase [Bacillus thuringiensis MC28]
gi|228679121|gb|EEL33329.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-28]
gi|407384005|gb|AFU14506.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis MC28]
Length = 293
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYQQFVEEIRERK 290
>gi|404370893|ref|ZP_10976208.1| putative ribosome biogenesis GTPase RsgA [Clostridium sp.
7_2_43FAA]
gi|404301519|gb|EEH98186.2| putative ribosome biogenesis GTPase RsgA [Clostridium sp.
7_2_43FAA]
Length = 289
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 150/296 (50%), Gaps = 39/296 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
K GV + C R + + +VGD V I+ + +G+IE++ RS+E++ P VANV
Sbjct: 18 KEGV-IECKARGKFRHKDMKPMVGDNV---DINVSNGKGVIEDIHDRSSELIRPTVANVT 73
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++F++ P + L RFL+ E I + LNKV+L EE K +++ GY+
Sbjct: 74 QAFVVFAIKNPDINFDLLNRFLILCEYNNIKAIVCLNKVDLASEEEKEEVKKKINDIGYD 133
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
LF + + LG++ L +RL D TV+ GPSG GKS+LIN L + H
Sbjct: 134 VLFINAKKGLGIELLKERLSDNETVLCGPSGAGKSTLINTLINRTH-------------- 179
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
G VS K GRGKHTTRH L+ + GYL D+PGF+ + + K+ L
Sbjct: 180 --------METGVVSEKIGRGKHTTRHSELIEIE-NGYLVDSPGFSNIDISFMNKEELRY 230
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE +E C F CLH EP C VK + RY +Y ++L+E+
Sbjct: 231 CFPEFEEY-----NHNCKFRGCLHNKEPECAVKNALQENKINETRYNFYIRILEEL 281
>gi|238916660|ref|YP_002930177.1| GTPase EngC [Eubacterium eligens ATCC 27750]
gi|238872020|gb|ACR71730.1| GTPase EngC [Eubacterium eligens ATCC 27750]
Length = 296
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 153/295 (51%), Gaps = 30/295 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + ID + +G + ++ R E++ P AN+D +++F+
Sbjct: 25 CKAKGIFRNRHIKPLVGDNVEIEVIDKDNFKGNVVDILPRKNELIRPASANIDQAMVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L +F++ +P + NK EL D+E N K + G E +F S +
Sbjct: 85 VKTPEPNFNLLDKFILMMNYQDVPTVVCFNKEELADDEYKNELKKKYEGCGCECIFISAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +G+D +++ L+ +TTV+ GPSGVGKS+L N L P + +V
Sbjct: 145 NNIGIDRIMEVLKGKTTVLAGPSGVGKSTLTNLL--IPDMEEQGEV-------------- 188
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS + GRG+HTTRH + + Y+ DTPGF +L V K+ L F E
Sbjct: 189 -SQTGEVS-RIGRGRHTTRHSEIYNVCKETYICDTPGFTSLNLPDVEKEDLRFYFEEFVP 246
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
KC FN C+H+ EPGC VK +++RY+ Y + +EI+ ++++
Sbjct: 247 F-----EGKCRFNGCMHVSEPGCAVKQAVENGIINYDRYKSYTDIFEEIKNKKKY 296
>gi|229098330|ref|ZP_04229277.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-29]
gi|229117347|ref|ZP_04246725.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-3]
gi|423378300|ref|ZP_17355584.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG1O-2]
gi|423464482|ref|ZP_17441250.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-1]
gi|423533824|ref|ZP_17510242.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB2-9]
gi|423540907|ref|ZP_17517298.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB4-10]
gi|423547145|ref|ZP_17523503.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB5-5]
gi|423623063|ref|ZP_17598841.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD148]
gi|228666247|gb|EEL21711.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-3]
gi|228685228|gb|EEL39159.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-29]
gi|401172095|gb|EJQ79316.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB4-10]
gi|401178866|gb|EJQ86039.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB5-5]
gi|401259836|gb|EJR66010.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD148]
gi|401636566|gb|EJS54320.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG1O-2]
gi|402420749|gb|EJV53020.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-1]
gi|402464043|gb|EJV95743.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB2-9]
Length = 293
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYQQFVEEIRERK 290
>gi|296133289|ref|YP_003640536.1| ribosome small subunit-dependent GTPase A [Thermincola potens JR]
gi|296031867|gb|ADG82635.1| ribosome small subunit-dependent GTPase A [Thermincola potens JR]
Length = 291
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 36/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+VVV +G+IE + R +E+ PP+ANV+ ++++ +
Sbjct: 25 CSLRGRFRLENKPALAGDRVVVRETG--KGKGVIEEILPRVSELARPPIANVEMVVIVMA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L R LV AE G+ + +NK +LVD + K+ GY + S
Sbjct: 83 AKDPAINRELLDRMLVMAEYEGLEAVICINKCDLVDLDFPQLLKNTYGKAGYRVILTSTV 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +G++ L L + +VI GPSG GKSSL+NA+ +P L K
Sbjct: 143 TGMGIEDLRSWLAGRISVIAGPSGAGKSSLLNAV----------------QPGLMLK--- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G+VS K GRGKHTTRHV LL L G++ADTPGF+ +L ++ ++LA FPE
Sbjct: 184 ---TGKVSAKIGRGKHTTRHVELLELEVEGFVADTPGFSSLNLPEMETENLAACFPEF-- 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
A+ C FN CLHL EP C VK D RY+ Y + E+ R+
Sbjct: 239 ---ASYEGACKFNGCLHLAEPQCAVKNAVAQGLIDKSRYRSYEAFMKELEGRK 288
>gi|423441408|ref|ZP_17418314.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X2-1]
gi|402418069|gb|EJV50369.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X2-1]
Length = 293
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYQQFVEEIRERK 290
>gi|289578502|ref|YP_003477129.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
italicus Ab9]
gi|289528215|gb|ADD02567.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
italicus Ab9]
Length = 293
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 151/294 (51%), Gaps = 37/294 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +LVGD + I+ DR G I N+ R ++ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNVTLLVGDIAEIQMIN--DREGYILNILPRKNKLTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L +++ S GY+ + S
Sbjct: 85 IIRPELNRILLDKMIVLAESNDIEPVVCINKVDLKEDKEAFDLVSVYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+D L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIDELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RGKHTTR V LL L GGY+ DTPGF + L + KQ L F E E
Sbjct: 185 --KTGEVSEKLLRGKHTTRSVELLSLDFGGYVLDTPGFTALT-LDIEKQDLRYYFREFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQLLDEIRIREE 312
C F++CLH+ EPGC V+K D RY Y L E++ +E+
Sbjct: 242 F-----QGGCKFSSCLHIQEPGCNVIKAVEEGLIDKNRYVSYISLFKELKEKEK 290
>gi|126695356|ref|YP_001090242.1| GTPase [Prochlorococcus marinus str. MIT 9301]
gi|126542399|gb|ABO16641.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9301]
Length = 305
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 158/294 (53%), Gaps = 27/294 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N + + LC VR + + + VGD+V++ +ID +R +I ++ +R ++ P VAN
Sbjct: 28 NSENSDKFLCKVRKSINFKDQLIYVGDEVIIENIDLKSKRAIITSLMKRKNLLIRPSVAN 87
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+ ++ + FS+++P+L + RFL+ AES G+ ++L L K +L+ ++ ++ + WG
Sbjct: 88 ISNIYITFSVEEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISDKRRSSLIDKFEKWG 147
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y+ + + E ++LL L+ + ++ +GPSGVGK++L+N + S A
Sbjct: 148 YQAITLNFERSDYFNNLLADLKQKKCSIFMGPSGVGKTTLLNMIIPGLQNSTAP------ 201
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QPSLLKVTKQ 254
VS K RGK+TTR++ L +S Y+ DTPGFN QP + +
Sbjct: 202 ----------------VSNKIKRGKNTTRNIELFSISNQSYIVDTPGFNMQPPEIDIN-- 243
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIR 308
L + EI + + E KC F NCLHL + GC + +ERY +Y ++++ +
Sbjct: 244 LLPNLYAEIYKQV-IEEGIKCKFRNCLHLKDEGCNLNKSFERYSFYKEMIESAK 296
>gi|423448366|ref|ZP_17425245.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG5O-1]
gi|401128960|gb|EJQ36643.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG5O-1]
Length = 293
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 155/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRKTVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+KE + C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 240 LKEASQY-----CKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYQQFVEEIRERK 290
>gi|295109193|emb|CBL23146.1| ribosome small subunit-dependent GTPase A [Ruminococcus obeum
A2-162]
Length = 292
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 144/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K ++ LVGD V + +D + G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDNQKPLVGDNVEITVLDKQEHTGNLIRILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M+ PK L RFL+ E + +P + NK +L E+ + GY + S
Sbjct: 85 MENPKPNFMLLDRFLIMMEQSDVPAVICFNKKDLASEQEVTELYETYKNCGYHVILSSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GL+ + + L+ +TTV+ GPSGVGKSSL N L+
Sbjct: 145 EKEGLEEIHEILKGKTTVVAGPSGVGKSSLTNLLQGEVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RG+HTTRH ++P+ +L DTPGF+ L + +Q L FPE +
Sbjct: 186 ---TGEISKKLKRGRHTTRHSQVIPVGENTFLMDTPGFSSLYLTDMEEQHLKDYFPEFR- 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
K +E +C F C H+ EPGC VK E RY+ Y L +E++ + +
Sbjct: 242 --KYDE--ECRFQGCRHIHEPGCRVKEALENGKISRIRYEDYLSLYEELKEKRRY 292
>gi|52080181|ref|YP_078972.1| ribosome-associated GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646039|ref|ZP_08000269.1| YloQ protein [Bacillus sp. BT1B_CT2]
gi|404489069|ref|YP_006713175.1| GTPase RsgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682123|ref|ZP_17656962.1| ribosome-associated GTPase [Bacillus licheniformis WX-02]
gi|52003392|gb|AAU23334.1| GTP binding protein EngC [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348060|gb|AAU40694.1| GTPase CpgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391789|gb|EFV72586.1| YloQ protein [Bacillus sp. BT1B_CT2]
gi|383438897|gb|EID46672.1| ribosome-associated GTPase [Bacillus licheniformis WX-02]
Length = 294
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 155/300 (51%), Gaps = 47/300 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G I + R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNKVTPLVGDDVVYQADN--DKEGYILEIKDRFNELVRPPISNVDQAVLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-------GYE 138
+P L RFLV E+ I + + K++LVD++ L K ++H + GY
Sbjct: 83 AKEPTFSTSLLDRFLVLVEAGDIRPIICITKMDLVDDDAL---KEQIHQYAEDYRNIGYS 139
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
S++S G++ ++ +D+ TV G SGVGKSSL+NA+ SP
Sbjct: 140 VYLTSMKSGRGIEDIIPHFQDKITVFAGQSGVGKSSLLNAI--SPDL------------- 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + +S GRGKHTTRHV L+ ++ GG +ADTPGF+ + + L Q
Sbjct: 185 -------ELKTAGISAHLGRGKHTTRHVELIDIN-GGLVADTPGFSSLEFAGIEAEDLGQ 236
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
TF EI E + A+C F CLH+ EP C VK E RY +Y + L EI+ R+
Sbjct: 237 TFLEIGE-----KSAECKFRGCLHIKEPNCAVKRAVENGEIAQYRYNHYVEFLTEIKDRK 291
>gi|78778404|ref|YP_396516.1| GTPase EngC [Prochlorococcus marinus str. MIT 9312]
gi|78711903|gb|ABB49080.1| GTPase EngC [Prochlorococcus marinus str. MIT 9312]
Length = 305
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 159/285 (55%), Gaps = 27/285 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC V+ + + + VGD+V++ +ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVKKSINFKDQFIYVGDEVIIDNIDLRSKRALITSLKKRKNLLIRPSVANISNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+FS+ +P+L + RFL+ AES G+ ++L L K +L+ E+ + + WGY+ +
Sbjct: 94 IFSVKEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISEKKRSFLLDKFGKWGYQTITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+++ L +LL L + + ++ +GPSGVGK++L+N + + N P
Sbjct: 154 NLQKPNYLKNLLVELKKKKCSIFMGPSGVGKTTLLNMI--------IPGLQNITAP---- 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QPSLLKVTKQSLAQTF 260
VS K RGK+TTR+V L P+S Y+ DTPGFN QP LKV + L +
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFPISSQSYIVDTPGFNMQP--LKVDIRLLPNLY 249
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD 305
EI + ++ +C F NCLHL + GC + +ERY +Y ++++
Sbjct: 250 SEIYTQV-IDDGIRCKFRNCLHLNDEGCNLNKSFERYSFYKEMIE 293
>gi|339443656|ref|YP_004709661.1| putative GTPase [Clostridium sp. SY8519]
gi|338903057|dbj|BAK48559.1| predicted GTPase [Clostridium sp. SY8519]
Length = 293
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 145/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD + ID DR+G I + R ++ P +AN+D +++F+
Sbjct: 26 CKAKGIFRKNNLKPLVGDDCSIEVIDEADRQGNIVQIHPRKNSLIRPAIANIDQAVVIFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK + R LV E IP + NK +L +EE L+ K T GY +F S
Sbjct: 86 AVYPKPHLNLVDRLLVTMEKQQIPSLIVFNKKDLAEEEELDRLKEAYRTAGYLLIFTSTV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L+Q LR +T+ + GPSGVGKSS+IN R SP
Sbjct: 146 TGEGMDELMQNLRGKTSAVAGPSGVGKSSIIN--RLSPEV-------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RG+HTTRH L+ L+ Y+ADTPGF + K+ + + FPE
Sbjct: 184 QMETGAVSKKIARGRHTTRHAQLIYLADHTYIADTPGFTSFGIDSFEKEEIGELFPEFAP 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-----VVKGDWERYQY--YFQLLDEIRIREEF 313
K C F+ C H+ EP C V +G+ R +Y Y + E++ ++++
Sbjct: 244 YEKY-----CRFSGCSHISEPVCGVRDAVAQGEISRSRYDSYCEFYRELKDKKKY 293
>gi|336113763|ref|YP_004568530.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 2-6]
gi|335367193|gb|AEH53144.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 2-6]
Length = 295
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 144/296 (48%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + R G I ++ +R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRKKKIIPLVGDHVEFQKENG--REGYILDIGERKNELVRPPIANVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV E I + + K +L+ E L + GY +F
Sbjct: 85 AKEPDFHTLLLDRFLVPIEKNLIRPLILITKCDLLGAEEKERLLGTLEVYRQIGYPVIFS 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G D+LL L+ TV G SGVGK+S++N L +P L
Sbjct: 145 SAKAGEGTDALLSALKGNITVFCGQSGVGKTSILNRL----------------DPAL--- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D + E+ST GRGKHTTRHV LLP+ GGG +ADTPGF+ V L FPE
Sbjct: 186 ---DLKTNEISTHLGRGKHTTRHVELLPV-GGGLVADTPGFSSLDFTGVELSELGDYFPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I E + A C F CLH EP C VK RY +Y Q L EI+ R+
Sbjct: 242 ISE-----KSAGCKFRGCLHENEPHCAVKAALAEGEIASFRYSHYIQFLQEIKNRK 292
>gi|260893170|ref|YP_003239267.1| ribosome small subunit-dependent GTPase A [Ammonifex degensii KC4]
gi|260865311|gb|ACX52417.1| ribosome small subunit-dependent GTPase A [Ammonifex degensii KC4]
Length = 292
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 144/286 (50%), Gaps = 36/286 (12%)
Query: 33 KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLE 92
K + ++LVGD V +D + RG++E V R TE+ PPVANV+ LL+F+ +P
Sbjct: 31 KLAEEKILVGDLVEFSPLD--EERGVLEKVLPRKTELYRPPVANVEQALLVFAFTEPDPN 88
Query: 93 PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152
L RFLV ++S I + NK++L + + G+ L S ++ GL+
Sbjct: 89 FKLLDRFLVLSQSAKIKPIICFNKLDLASPGLYQEERRAYEEAGFVFLAVSAKTGQGLEE 148
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
L + L + TV+ GPSGVGKSSL+NA++ A V
Sbjct: 149 LKRHLSHRVTVLAGPSGVGKSSLLNAIQPGLKLQTAP----------------------V 186
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272
S K+GRG+HTTR V LLPL GG + DTPGF L + SL+ FPEI A
Sbjct: 187 SRKTGRGRHTTRLVELLPLDIGGLVVDTPGFTSLDLPDIPPASLSAYFPEI-----ARVG 241
Query: 273 AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A C F++CLH EPGC V+ RYQ+Y L EI RE
Sbjct: 242 AGCRFSDCLHQAEPGCAVREAVAEGKIPRFRYQHYLVFLGEILERE 287
>gi|323701790|ref|ZP_08113461.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
nigrificans DSM 574]
gi|333923486|ref|YP_004497066.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533326|gb|EGB23194.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
nigrificans DSM 574]
gi|333749047|gb|AEF94154.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 293
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 147/291 (50%), Gaps = 38/291 (13%)
Query: 26 CVVRALLK--KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R + K LVGD+V V I G I+ V R T++ PPVAN++ +++
Sbjct: 25 CTLRGKFRLDKSSSAALVGDRVKVTPIR--GNTGRIDEVLPRKTQLFRPPVANIEQAVIV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P+ L RFLV AE + + LNK +L+ + W GY+ + S
Sbjct: 83 FAVQDPEPNLTLLDRFLVLAEHANVDPVVCLNKADLMSGRREHDWLKLYRKIGYQTVITS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ G++ L Q L +T+V GPSGVGKSSL+NA+ +P L K
Sbjct: 143 TKNGDGIEELRQLLVGKTSVFAGPSGVGKSSLLNAV----------------QPGLALK- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
GE+S+K RGKHTTRHV LLPL GG++ D+PGF+ L + ++ L FPE
Sbjct: 186 -----TGEISSKLKRGKHTTRHVELLPLQMGGFVMDSPGFSSLDLPPMQREELTYYFPEF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
AN C FN CLH EP C VK + R+Q Y L+E+
Sbjct: 241 -----ANFIGDCKFNGCLHYHEPCCAVKQAVQQGLINEGRHQNYLAFLEEV 286
>gi|311029978|ref|ZP_07708068.1| ribosome-associated GTPase [Bacillus sp. m3-13]
Length = 292
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 159/294 (54%), Gaps = 38/294 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G I +V R E++ PP+AN+D +L+FS
Sbjct: 26 CRGRGVFRKNKITPLVGDSVVFQAEN--DQEGYIMDVLPRKNELVRPPIANIDQAILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144
+P+ L RFLV ES G+ + ++K++L+DE+ L + + GYE L S
Sbjct: 84 AMEPEFSTVLLDRFLVLIESKGVSPLICISKMDLLDEDAKLLGFADYYRSIGYEVLLTST 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ L +L L+++++VI G SGVGKSSL+N LR P L
Sbjct: 144 KEPEQLKEILPYLKEKSSVIAGQSGVGKSSLLNVLR----------------PEL----- 182
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ + +S+ GRGKHTTRHV L+ ++ G++ADTPGF+ L++ + + FPE
Sbjct: 183 -ELKTDNISSHLGRGKHTTRHVELMEIN-NGFVADTPGFSSLEFLEMEAEDVKDCFPEFV 240
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E K+++ C F C HL EP C VK E RY++Y ++EI+ R+
Sbjct: 241 E--KSHD---CKFRGCTHLREPKCAVKEAVENEEIASYRYKHYVSFVEEIKDRK 289
>gi|300854449|ref|YP_003779433.1| GTPase [Clostridium ljungdahlii DSM 13528]
gi|300434564|gb|ADK14331.1| predicted GTPase [Clostridium ljungdahlii DSM 13528]
Length = 287
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 151/295 (51%), Gaps = 38/295 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +VGDKV I +G+I ++ R T++ P VANV L++F+
Sbjct: 24 CKARGKFRHNSLSPMVGDKV---DIALEKEQGVINRIYSRKTKLKRPAVANVTQALVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
++P++ L RFL+ E + + + NK++L +E+ + + + GY+ +F + +
Sbjct: 81 FNRPEINEDLLNRFLISCELNNLKIVVCFNKLDLAEEKEKSDIANTMKKIGYDVIFLTAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + ++L+ TV+ GPSGVGKS+++NA+ E
Sbjct: 141 ENCGIDKIKEKLKGNITVLCGPSGVGKSTILNAISGK----------------------E 178
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RGKHTTRH L+ L G + DTPGF+ + ++++ L FPE +
Sbjct: 179 IMETGEISQKLKRGKHTTRHSELIELE-EGLIVDTPGFSSLDISDISEEKLQYCFPEFTD 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
++ KC F C H EP C +K D +RY++Y ++L+EI ++++
Sbjct: 238 LI-----GKCKFTGCFHYKEPNCAIKASVEDGKIDRKRYEFYIKVLNEIISKKKY 287
>gi|123965253|ref|YP_001010334.1| GTPase [Prochlorococcus marinus str. MIT 9515]
gi|123199619|gb|ABM71227.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9515]
Length = 305
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 156/293 (53%), Gaps = 25/293 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N + LC +R + + V VGD+V++ ID +R +IE++ +R + P VAN
Sbjct: 28 NSDSNKNFLCKIRKSVNFRNQLVFVGDEVILSQIDTTRKRAIIESLVKRKNLLERPSVAN 87
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+ ++ ++ S+ +PKL + RFL+ AE G+ ++L L K +L+ E+ + WG
Sbjct: 88 ISNIYVICSVQEPKLNLSQVNRFLISAEQMGVEVSLVLTKCDLITEQKRILLVEKFKKWG 147
Query: 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y+ + ++ S +L+ L + + ++ +GPSGVGK++L+N + + + A+
Sbjct: 148 YQAITLNLNSPKNFTNLMIELKKKKCSIFIGPSGVGKTTLLNMIIPGLNNTTAS------ 201
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
VS+K RGK+TTR+V L LS Y+ DTPGFN + L++ +
Sbjct: 202 ----------------VSSKIKRGKNTTRNVELFSLSSKSYIVDTPGFNMQT-LEIDIRE 244
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIR 308
L +PEI + + C F NCLH+ + GC + ++ERY +Y ++++ +
Sbjct: 245 LPNLYPEIYRQV-VIKGIHCKFRNCLHINDQGCNLNKNFERYTFYKEMIESFK 296
>gi|261405804|ref|YP_003242045.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp.
Y412MC10]
gi|261282267|gb|ACX64238.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp.
Y412MC10]
Length = 302
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 149/292 (51%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V + + G ++ + RS++++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKKGISPLVGDRVKYSLTE--NGEGTVDEILPRSSQLIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E +G+ + L K +L D+ +VL K + GYE L S
Sbjct: 92 VKEPDLSLHLLDKFLVHIEHSGLEALICLTKQDLADDSDDVLEQVKRQYEEIGYEVLITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G + + RL + +V G SGVGKSSL+NAL P S
Sbjct: 152 SLQGIGTEEVKDRLAARISVFSGQSGVGKSSLLNALM--PGLS----------------- 192
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 193 ---LETSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSTCFKEF 249
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
A A+C F C H+ EPGC V E RY++Y + E++
Sbjct: 250 -----APYAAECKFRGCSHMQEPGCRVIQAKEDGIILASRYEHYVEFYTEMK 296
>gi|421074220|ref|ZP_15535260.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans JBW45]
gi|392527726|gb|EIW50812.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans JBW45]
Length = 291
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 146/291 (50%), Gaps = 36/291 (12%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R KK + +LVGD+V + + +G+IE + R + + P +AN+D +++ F
Sbjct: 24 MCTLRGRFKKERFSLLVGDEVEYNITE--NGKGIIEKILPRRSMLQRPMIANIDQVIITF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P + + RFLV AE + + + + +NK++L D E L + GY + S
Sbjct: 82 AAVSPDINTILIDRFLVLAEMSDLDIVICINKIDLADSEELKPILELYRSIGYCVITISA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L +L + +V GPSG GKS+++N +
Sbjct: 142 KMGVGIEELRNQLSGKISVFAGPSGAGKSTILNTVEEGLTLV------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G+VS K GRGKHTTR LLPLS GG++ DTPGF+ V K L FPEI
Sbjct: 184 ----TGQVSEKIGRGKHTTRFAELLPLSSGGFVVDTPGFSFTEFENVKKNELMYYFPEIA 239
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
++ +C FN CLHL EP C VK +RY Y ++L EI+
Sbjct: 240 AVVH-----ECKFNTCLHLKEPQCAVKQLVAEGRIQEQRYHSYTEILAEIQ 285
>gi|358063781|ref|ZP_09150383.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
WAL-18680]
gi|356698029|gb|EHI59587.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
WAL-18680]
Length = 291
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 144/293 (49%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K + LVGD V + +D G I+ + RS ++ P VAN+D L++F+
Sbjct: 24 CKARGVFRNRKLKPLVGDNVEITVLDEETLEGNIDEILPRSNTLVRPAVANIDQALVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L +FLV E IP+T+ NK++L DE +NT++S GY LF S
Sbjct: 84 ITHPSPNLNLLDKFLVMMERLEIPVTIVFNKIDLTDEVEMNTYRSIYEPAGYRVLFASAS 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + +R +TTV+ GPSGVGKSSL N L+ P A+
Sbjct: 144 DGDGMEDIRALIRGKTTVLAGPSGVGKSSLTNILQ--PLAA------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L + Y+ DTPGF+ + + + L FPE +
Sbjct: 183 -METGAISEKIQRGKHTTRHSELFFVEEDTYMMDTPGFSSMYVEDMQAEELKHYFPEFER 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLLDEIR 308
+A C F C+H+GE C VK +E Y+ ++Q L E R
Sbjct: 242 YEEA-----CKFLGCVHIGEKVCGVKDAVERGEVSRSRYENYRLFYQELKEKR 289
>gi|295706326|ref|YP_003599401.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium DSM
319]
gi|294803985|gb|ADF41051.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium DSM
319]
Length = 293
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTHCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C F CLH+ EP C VK +E RY++Y Q ++EI+ R+
Sbjct: 240 MSRL-----SEQCKFRGCLHVKEPKCAVKEAYEQKEIPSYRYEHYLQFIEEIKQRK 290
>gi|392960514|ref|ZP_10325982.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans DSM 17108]
gi|421054729|ref|ZP_15517694.1| ribosome small subunit-dependent GTPase A [Pelosinus fermentans B4]
gi|421060979|ref|ZP_15523374.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans B3]
gi|421063848|ref|ZP_15525788.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A12]
gi|421071592|ref|ZP_15532708.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A11]
gi|392440410|gb|EIW18090.1| ribosome small subunit-dependent GTPase A [Pelosinus fermentans B4]
gi|392446857|gb|EIW24128.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A11]
gi|392452577|gb|EIW29501.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans B3]
gi|392455091|gb|EIW31898.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans DSM 17108]
gi|392462214|gb|EIW38321.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A12]
Length = 291
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 146/291 (50%), Gaps = 36/291 (12%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R KK + +LVGD+V + + +G+IE + R + + P +AN+D +++ F
Sbjct: 24 MCTLRGRFKKERFSLLVGDEVEYNITE--NGKGIIEKILPRRSMLQRPMIANIDQVIITF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P + + RFLV AE + + + + +NK++L D E L + GY + S
Sbjct: 82 AAVSPDINTVLIDRFLVLAEMSDLDIVICINKIDLADSEELRPILELYRSIGYCVITISA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L +L + +V GPSG GKS+++N +
Sbjct: 142 KMGVGIEELRNQLAGKISVFAGPSGAGKSTILNTVEEGLTLV------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G+VS K GRGKHTTR LLPLS GG++ DTPGF+ V K L FPEI
Sbjct: 184 ----TGQVSEKIGRGKHTTRFAELLPLSSGGFVVDTPGFSFTEFENVKKNELMYYFPEIA 239
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
++ +C FN CLHL EP C VK +RY Y ++L EI+
Sbjct: 240 AVVH-----ECKFNTCLHLKEPQCAVKQLVAEGRIQEQRYHSYTEILAEIQ 285
>gi|389843519|ref|YP_006345599.1| ribosome small subunit-dependent GTPase A [Mesotoga prima
MesG1.Ag.4.2]
gi|387858265|gb|AFK06356.1| ribosome small subunit-dependent GTPase A [Mesotoga prima
MesG1.Ag.4.2]
Length = 312
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 169/310 (54%), Gaps = 38/310 (12%)
Query: 11 SRTSDCND-KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
SR + D +TG L+C + + R +VGD+V D +G IE++ R TE+
Sbjct: 25 SRNMEVVDAETGGRLICTMPGRFRLQGIRPIVGDRVEYALSG--DGQGRIESILPRKTEL 82
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P ++N++ +LL+ S+ +P ++ RFLV AE +P+T+ +NK++L++ E L+ +
Sbjct: 83 LRPRISNIEQILLVLSLKEPAVQNLITDRFLVLAEYAKLPVTIVVNKIDLINNEELDRF- 141
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
S ++ YE S ++++ LD L + L+ + +V+ G SGVGKSSL+N+L
Sbjct: 142 SDVYGEHYEICPVSSKNRINLDRLREVLKGKISVMAGMSGVGKSSLLNSLNP-------- 193
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
G K RV E+S RG+HTT +V LL GG +ADTPGF L
Sbjct: 194 ----------GLKL----RVSEISRGLERGRHTTSYVELLQFEFGGLIADTPGFANLELP 239
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQ 302
+ ++L + FPEI + E C+F++C+H+ EPGC VK E RY+ Y
Sbjct: 240 VIAPENLDKCFPEI-----SQEQGMCAFSDCVHVDEPGCYVKELVEAGSIHRSRYESYLI 294
Query: 303 LLDEIRIREE 312
+ +E++ RE+
Sbjct: 295 MYNELKEREQ 304
>gi|253575782|ref|ZP_04853117.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844825|gb|EES72838.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 304
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 150/297 (50%), Gaps = 44/297 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+VV + + G ++ + R TE++ PP+AN +LLFS
Sbjct: 32 CRGRGIFKKKGITPLVGDRVVYSPTE--NGEGTVDEILPRETELIRPPIANAKLAVLLFS 89
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-------EVLNTWKSRLHTWGYE 138
+ +P L L +FLV E G+ + L K +L++E E++ K+ + GYE
Sbjct: 90 LREPDLNLQLLDKFLVHIEHAGLQALICLTKEDLLEEDGAEETPEIIRQVKAMYESIGYE 149
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + +G + + RL + +V G SGVGKSSL+NA+
Sbjct: 150 VIVTSSVTGMGTEEVKSRLAGEISVFSGQSGVGKSSLLNAM------------------- 190
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
LG E+S K GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+
Sbjct: 191 LGLSL----ETSEISLKLGRGRHTTRHVELIELENGGYVADTPGFSQLDFLELGIEELSS 246
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F E A+ C F C HL EPGC V+ + RY++Y Q +E++
Sbjct: 247 CFREF-----ADYAEGCKFRGCSHLHEPGCKVREAADNGEIAASRYEHYVQFYEEMK 298
>gi|282850144|ref|ZP_06259523.1| ribosome small subunit-dependent GTPase A [Veillonella parvula ATCC
17745]
gi|282579637|gb|EFB85041.1| ribosome small subunit-dependent GTPase A [Veillonella parvula ATCC
17745]
Length = 287
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 143/297 (48%), Gaps = 41/297 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + +G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMIGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E + C FN C H EP C +K E RY Y + ++I
Sbjct: 229 TLFPEFGEYVDT-----CKFNPCYHEHEPICGIKAALEAGHIHQGRYDAYMSIRNDI 280
>gi|347750542|ref|YP_004858107.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 36D1]
gi|347583060|gb|AEO99326.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 36D1]
Length = 295
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 147/297 (49%), Gaps = 42/297 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + R G I ++ +R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRKRKITPLVGDHVEFQKENG--REGYILDIGERKNELVRPPIANVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
+P L RFLV E I + + K +L+ E++L T + GY +
Sbjct: 85 AKEPAFSTLLLDRFLVPIEKNLIRPLILITKCDLLGADEKEKLLETL-AVYRQIGYPVML 143
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S ++ G D+LL L+ + TV G SGVGK+S++N L +P LG
Sbjct: 144 SSAKAGEGADALLSALKGKITVFCGQSGVGKTSILNRL----------------DPALGL 187
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K E+ST GRGKHTTRHV LLP+ GGG +ADTPGF+ V L FP
Sbjct: 188 K------TNEISTHLGRGKHTTRHVELLPV-GGGLVADTPGFSSLDFNSVELTELGDNFP 240
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EI E + A C F CLH EP C VK RY +Y Q L EI+ R+
Sbjct: 241 EISE-----KAAGCKFRGCLHENEPHCAVKAALAEGEIASFRYSHYIQFLQEIKNRK 292
>gi|415886525|ref|ZP_11548305.1| ribosome-associated GTPase [Bacillus methanolicus MGA3]
gi|387587212|gb|EIJ79535.1| ribosome-associated GTPase [Bacillus methanolicus MGA3]
Length = 293
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 150/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D G I + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDNVVYQAENETD--GYILEIKERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++LVD EE +N + GY+ L
Sbjct: 83 AVEPDFSTALLDRFLVLVEFNNIKPIICITKMDLVDEEKEEKINKYAFEYRKAGYDVLLI 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G+ L L + +V+ G SGVGKSSL+NAL+ P L
Sbjct: 143 SSKKAIGIGDLFPHLEGKISVVAGQSGVGKSSLLNALK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++ST GRGKHTTRHV L+ + G G +ADTPGF+ L+ + + L FP+
Sbjct: 184 ---ELKTNQISTHLGRGKHTTRHVELIEI-GNGLVADTPGFSSLELIDIEPEDLNSCFPD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ +C F CLH+ EP C VK + RY +Y + L EI+ R+
Sbjct: 240 FAVL-----SEECRFRGCLHISEPKCAVKAAVDEGKIPAYRYDHYKEFLQEIKDRK 290
>gi|254526380|ref|ZP_05138432.1| ribosome small subunit-dependent GTPase A [Prochlorococcus marinus
str. MIT 9202]
gi|221537804|gb|EEE40257.1| ribosome small subunit-dependent GTPase A [Prochlorococcus marinus
str. MIT 9202]
Length = 305
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 149/280 (53%), Gaps = 27/280 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC VR + + + VGD V + +ID +R +I ++ +R ++ P VANV ++ +
Sbjct: 34 KFLCKVRKSINFKDQLIYVGDAVFIENIDLKRKRALITSLKKRKNLLVRPSVANVSNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++PKL + RFL+ AES G+ ++L L K +L+ + ++ WGY+ +
Sbjct: 94 TFSVEEPKLNLSQVNRFLISAESMGVEVSLVLTKCDLISDTRRFFLINKFEKWGYQAITL 153
Query: 143 SVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++E ++L+ L+ + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLEKSDHFNNLIVELKQKECSIFMGPSGVGKTTLLNMIIPGLQNSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QPSLLKVTKQSLAQTF 260
VS K RGK+TTR+V L +S Y+ DTPGFN QP L V + L +
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQP--LNVDIRLLPSLY 249
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY 300
EI + L +E C F NCLHL + GC + +ERY +Y
Sbjct: 250 SEINKQL-IDEKMNCKFRNCLHLNDEGCNLNKSFERYSFY 288
>gi|304437055|ref|ZP_07397018.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370006|gb|EFM23668.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 291
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 141/296 (47%), Gaps = 39/296 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G E+LC +R + + +L GD V V D G+IE R++ + P VAN+ +
Sbjct: 23 GAEMLCKLRGKSMRGRDALLPGDVVHVAC--GADGEGVIEGTEPRTSLLARPRVANLTQI 80
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
++ + P P ++RFLV AE +GI + L +NK++L+D E + GY
Sbjct: 81 VITAAAASPDPHPLVVSRFLVLAEHSGIRNIVLCINKIDLIDGEAAARLCAPYEAAGYPV 140
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S G+ +L +RL + TV GPSG GKSSL+NA+ SS L
Sbjct: 141 LPVSAAEGTGIAALRERLSGEITVFAGPSGAGKSSLLNAMDSS----------------L 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G VG VS K GRG+HTTR LLP + GY+ DTPGF Q L V LA
Sbjct: 185 GLA------VGAVSEKIGRGRHTTRRAELLPFA-DGYVVDTPGFTQQELTGVAADDLAGC 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
FPE L C F C H EP C VK ERY Y LL EIR
Sbjct: 238 FPEFLHFL------GCRFTPCSHSHEPDCAVKAAAEEGRLACERYDAYIALLKEIR 287
>gi|294500978|ref|YP_003564678.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium QM
B1551]
gi|294350915|gb|ADE71244.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium QM
B1551]
Length = 293
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTDCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C F CLH+ EP C VK +E RY++Y Q ++EI+ R+
Sbjct: 240 MSRL-----SEQCKFRGCLHVKEPKCAVKEAYEQKEIPSYRYEHYLQFIEEIKQRK 290
>gi|337750133|ref|YP_004644295.1| protein RsgA [Paenibacillus mucilaginosus KNP414]
gi|379722971|ref|YP_005315102.1| protein RsgA [Paenibacillus mucilaginosus 3016]
gi|386725756|ref|YP_006192082.1| protein RsgA [Paenibacillus mucilaginosus K02]
gi|336301322|gb|AEI44425.1| RsgA [Paenibacillus mucilaginosus KNP414]
gi|378571643|gb|AFC31953.1| RsgA [Paenibacillus mucilaginosus 3016]
gi|384092881|gb|AFH64317.1| protein RsgA [Paenibacillus mucilaginosus K02]
Length = 302
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 153/306 (50%), Gaps = 44/306 (14%)
Query: 18 DKTGVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+ GVE + C R + KK LVGD+V + + G + V R++E++ PPVAN
Sbjct: 20 EAAGVESVQCRARGVFKKRGISPLVGDRVQFELTE--NGEGTVTEVLPRTSELIRPPVAN 77
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-------LNTWK 129
VD +L+FS+D+P L L +FLV ES G+ +AL K +L++ + L
Sbjct: 78 VDQAVLVFSIDEPALNLPLLDKFLVHTESAGLDTIIALTKRDLIERQEGEAEAVDLGPVV 137
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ GY S + +G++ +L +L + +V G SGVGKSSL+NA+ P S
Sbjct: 138 ELYESIGYPMFVTSAKEGIGVEDVLAKLAGRISVFAGQSGVGKSSLLNAM--VPGLSLET 195
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+ +S K GRGKHTTRHV L+ L GG +ADTPGF+Q L
Sbjct: 196 NA--------------------ISMKLGRGKHTTRHVELIRLQNGGLVADTPGFSQLDFL 235
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQ 302
+V + L F +E L E +C F CLHL EP C V+ E RY Y Q
Sbjct: 236 QVEAEGLGGCF---REFLPYAE--ECRFRGCLHLHEPDCRVQSAQEEGLISASRYNNYLQ 290
Query: 303 LLDEIR 308
L EIR
Sbjct: 291 FLQEIR 296
>gi|149182349|ref|ZP_01860827.1| ribosome-associated GTPase [Bacillus sp. SG-1]
gi|148849968|gb|EDL64140.1| ribosome-associated GTPase [Bacillus sp. SG-1]
Length = 294
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 157/296 (53%), Gaps = 39/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S + ++ G I VF+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGIFRKNKVTPLVGDHVSFQSEN--EKEGYILEVFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + + K++LV + E++N + ++GYE +
Sbjct: 83 AVEPDFSTALLDRFLVLVESKEIEPLICVTKMDLVKDGEREMINDYVETYRSFGYEVVIT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +++ GL +L L + +V G SGVGKSSL+NALR P L
Sbjct: 143 SSKTEEGLAALKPHLAGKISVFAGQSGVGKSSLLNALR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D + ++ST GRGKHTTRHV L+ + G +ADTPGF+ ++ + L+ FPE
Sbjct: 184 ---DLKTSDISTHLGRGKHTTRHVELIEVDDEGLVADTPGFSSLEFSELELEELSSCFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ E K++E C F C H+ EP C VK E RY +Y Q +EI+ R+
Sbjct: 241 MAE--KSDE---CKFRGCFHINEPKCAVKKAVESGEIPEFRYDHYQQFYNEIKDRK 291
>gi|154250364|ref|YP_001411189.1| ribosome small subunit-dependent GTPase A [Fervidobacterium nodosum
Rt17-B1]
gi|154154300|gb|ABS61532.1| ribosome small subunit-dependent GTPase A [Fervidobacterium nodosum
Rt17-B1]
Length = 302
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 39/297 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG + LC +R KK R + GD +V V G++EN+ R +E+ P VAN+D
Sbjct: 30 ETGEQFLCKLRGKFKKQGIRPITGD--IVEYTKIVGNEGVVENILNRKSELKKPSVANID 87
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ ++D+P + L RF+V E G+P+ + LNKV+L+ EE + ++S ++ Y
Sbjct: 88 QVIIVTTIDKPAVPLDILDRFIVLVEYEGLPIVIVLNKVDLLKEEQIKEFES-IYKKLYP 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + G++ L Q+L + +V G SGVGKSSL+N++ ++
Sbjct: 147 VVKTSAMTGYGIEELKQQLSGKISVFAGMSGVGKSSLLNSIENNLKL------------- 193
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R GE+S K GRGKHTT LL LS GG++ DTPGF + +++ L +
Sbjct: 194 ---------RTGEISEKLGRGKHTTTAAELLRLSFGGWVVDTPGFASLDIDHISENILRE 244
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
F E E KC F +C H+ EPGC VK + RY+ Y ++L+E++
Sbjct: 245 LFIEF-------ENDKCYFPDCYHIDEPGCHVKEMVKKGKIPYSRYESYQRMLEELQ 294
>gi|374307509|ref|YP_005053940.1| ribosome small subunit-dependent GTPase A [Filifactor alocis ATCC
35896]
gi|291166478|gb|EFE28524.1| ribosome small subunit-dependent GTPase A [Filifactor alocis ATCC
35896]
Length = 296
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 142/293 (48%), Gaps = 35/293 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+C R L K K+ +LVGDKV + D V + G+IE + R+ ++ P +ANV H LL
Sbjct: 23 FICKARGLFKNKKQSLLVGDKVNIVITDNVSKDGIIEKIIPRTNILIRPSIANVSHALLF 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS+ P + RF+V A+ + +TL +KV+L D L GY + S
Sbjct: 83 FSIKNPDPNLSLIDRFIVLAQEQQLKITLCFSKVDLDDGIRLQKLLEIYKKVGYPVISIS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
L+ L L+ TVI GPSG GKSS IN L S+
Sbjct: 143 TYDNKNLEELKNTLKSHITVIAGPSGAGKSSFINTL---------------------SQN 181
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
F + + VS+K GRG+HTTRHV L+ + ++ADTPGF+ SL + L + F E
Sbjct: 182 F-NIKTNSVSSKIGRGRHTTRHVELMRIGTDSWIADTPGFSSLSLSHIPYTELKEYFLEF 240
Query: 264 KEMLKANEPAKCSFNN-CLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
+ C F+N CLH EP C V ERYQ Y QLL+EI+
Sbjct: 241 HDY-----DLNCKFSNTCLHYKEPDCCVINAVKNKEISLERYQSYLQLLEEIK 288
>gi|410667759|ref|YP_006920130.1| ribosome biogenesis GTPase RsgA [Thermacetogenium phaeum DSM 12270]
gi|409105506|gb|AFV11631.1| ribosome biogenesis GTPase RsgA [Thermacetogenium phaeum DSM 12270]
Length = 291
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
+LVGD+V+ ID + G+IE + R I PPVANVD ++L+ S+ QP+ + L R
Sbjct: 37 LLVGDRVLFTKID--SKEGLIEAILPRKNSIQRPPVANVDQMILVVSLAQPEPDLKLLNR 94
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E + + + NKV+LV E + + GY L S K+G+ L + L
Sbjct: 95 TLVLGEMEKLEILICFNKVDLVAREKAESLEEIYRKAGYRTLLTSALEKIGVTELYRSLA 154
Query: 159 DQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+ +V+ GPSG GKS+L+N + P S A GE+S K
Sbjct: 155 AERRISVLAGPSGAGKSTLLNTI--DPGLSLAT--------------------GEISPKL 192
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276
RG+HTTR+V LLP+ G GY+ADTPGF+ L + + LA FPEI+E KC
Sbjct: 193 KRGRHTTRYVQLLPI-GNGYVADTPGFSNLELPSIKRTELAHYFPEIREY-----AGKCR 246
Query: 277 FNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
F +CLH+ EP C VK + RYQ Y + L EI
Sbjct: 247 FLDCLHIDEPDCEVKNALKRGIISNIRYQDYQRFLGEI 284
>gi|56419712|ref|YP_147030.1| ribosome-associated GTPase [Geobacillus kaustophilus HTA426]
gi|81347649|sp|Q5L0R8.1|RSGA_GEOKA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|56379554|dbj|BAD75462.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 293
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRITPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFNQIELDELPHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRTYGEG-----CKFRGCLHIAEPKCAVREAVEAGEIPSYRYDHYVSFVAEMKERK 290
>gi|297530648|ref|YP_003671923.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. C56-T3]
gi|297253900|gb|ADI27346.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. C56-T3]
Length = 293
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFDQIELDELPHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRTYGEG-----CKFRGCLHIAEPKCAVREAVEAGEIPSYRYDHYVSFVAEMKERK 290
>gi|169831739|ref|YP_001717721.1| ribosome small subunit-dependent GTPase A [Candidatus Desulforudis
audaxviator MP104C]
gi|169638583|gb|ACA60089.1| ribosome small subunit-dependent GTPase A [Candidatus Desulforudis
audaxviator MP104C]
Length = 293
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 148/294 (50%), Gaps = 38/294 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R L+ + RVL GD+VVV S+ RG++E V R +E++ PPVAN D L++ S
Sbjct: 25 CTLRGKLRT-RGRVLAGDEVVVRSLS--GGRGVVEEVKPRRSEMVRPPVANADQALVVVS 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN-TWKSRLHTWGYEPLFCSV 144
+P L R LV E+ GI + + +NK++L N W GY L S
Sbjct: 82 FREPSPALNLLDRILVHCEAAGIRIVICVNKLDLAAPGAENEAWIETYRDAGYPTLVTSA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ +L + L + TV+ GPSG GKSSLINA+ +P L
Sbjct: 142 VTGEGVAALREALARRITVVAGPSGSGKSSLINAV----------------QPGL----- 180
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ R GE+S K RG+H TRHV LL L GGG++AD PGF+ L + + LA FPE
Sbjct: 181 -NLRTGEISPKLQRGRHVTRHVELLALEGGGWVADAPGFSVLRLEGIDRAELAGLFPEFG 239
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQY--YFQLLDEIRIRE 311
C F +C+H EP C V+ G R++Y Y L EI RE
Sbjct: 240 RHTDG-----CRFADCVHYREPDCAVRRAVAGGAVARFRYAHYLGFLREILARE 288
>gi|375091695|ref|ZP_09737983.1| ribosome small subunit-dependent GTPase A [Helcococcus kunzii ATCC
51366]
gi|374562582|gb|EHR33909.1| ribosome small subunit-dependent GTPase A [Helcococcus kunzii ATCC
51366]
Length = 292
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 136/270 (50%), Gaps = 30/270 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L ++ + +VGDKV + + D IENV +R ++ PP+AN+D +LL+ S+
Sbjct: 28 ARGLFREKNIKPIVGDKVEINILQ--DGTAYIENVLERKNSLVRPPIANIDQILLVHSLV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
PK+ ++L+ E GI + L +NK+EL E + +K+ Y +F S E
Sbjct: 86 NPKINYTTFDKYLIMLEHFGIEVNLIINKIELASESEIQEFKNIYDKTKYRYIFTSAEEN 145
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+G+D L ++D+ + GPSGVGKS+L+N L D+ DV+
Sbjct: 146 IGIDELKAIMKDKISSFAGPSGVGKSTLLNLLH------DSFDVE--------------- 184
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPEIKEM 266
G +S K+ RGKHTTRH L + ++ DTPGF+ L + + L Q F E
Sbjct: 185 -TGNISKKTSRGKHTTRHTELFEIDKNTFIFDTPGFSSLDLSFIKDEKLLKQYFDEFLIY 243
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWER 296
K C FNNC H+ EP C VK E+
Sbjct: 244 QKM-----CKFNNCDHINEPKCAVKDALEK 268
>gi|294791796|ref|ZP_06756944.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 6_1_27]
gi|294457026|gb|EFG25388.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 6_1_27]
Length = 287
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 142/297 (47%), Gaps = 41/297 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E + C FN C H EP C +K E RY Y + ++I
Sbjct: 229 TLFPEFGEYVDT-----CKFNPCYHEHEPICGIKAALEAGHIHQGRYDAYMSIRNDI 280
>gi|375008145|ref|YP_004981778.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286994|gb|AEV18678.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 293
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRITPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFDQIELDELPHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRTYGEG-----CKFRGCLHIAEPKCAVREAVEAGEIPSYRYDHYVSFVAEMKERK 290
>gi|225574503|ref|ZP_03783113.1| hypothetical protein RUMHYD_02580 [Blautia hydrogenotrophica DSM
10507]
gi|225038290|gb|EEG48536.1| ribosome small subunit-dependent GTPase A [Blautia
hydrogenotrophica DSM 10507]
Length = 292
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 147/303 (48%), Gaps = 35/303 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ GV C + + +K K + LVGD V + + ++ G + + R E++ P VANV
Sbjct: 18 DEAGV-YECKAKGIFRKNKVKPLVGDDVEIELLGQKEKVGNVIRIMPRKNELIRPAVANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D L++F+ QP+ L RFLV E IP+ + NK +LV E + GY
Sbjct: 77 DQALVIFAAAQPQPNFLLLDRFLVMMERQEIPVKICFNKKDLVSENECQSVCQIYSDCGY 136
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ ++ S + G + + Q LR +TTV+ GPSGVGKSSL N ++S
Sbjct: 137 DVVWTSALLQDGREEIRQLLRGKTTVVAGPSGVGKSSLTNLVQSEVQME----------- 185
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+GE+S K RGKHTTRH ++P+ G YL DTPGF+ L + ++ L
Sbjct: 186 -----------IGEISQKLKRGKHTTRHSEIIPVEPGTYLVDTPGFSSLYLENIEREELR 234
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F E +E + C F C H+ EP C VK E RY+ Y L E+ +
Sbjct: 235 NYFTEFREYEDS-----CKFQGCAHVQEPQCGVKAALEEGKISRQRYENYLTLYQELSAK 289
Query: 311 EEF 313
+
Sbjct: 290 RRY 292
>gi|261419375|ref|YP_003253057.1| ribosome-associated GTPase [Geobacillus sp. Y412MC61]
gi|319766190|ref|YP_004131691.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC52]
gi|261375832|gb|ACX78575.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC61]
gi|317111056|gb|ADU93548.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC52]
Length = 293
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 150/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFGALEFDQIELDELPHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRTYGEG-----CKFRGCLHIAEPKCAVREAVEAGEIPSYRYDHYVSFVAEMKERK 290
>gi|294793657|ref|ZP_06758794.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 3_1_44]
gi|416998708|ref|ZP_11939377.1| ribosome small subunit-dependent GTPase A [Veillonella parvula
ACS-068-V-Sch12]
gi|294455227|gb|EFG23599.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 3_1_44]
gi|333976861|gb|EGL77720.1| ribosome small subunit-dependent GTPase A [Veillonella parvula
ACS-068-V-Sch12]
Length = 287
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 146/300 (48%), Gaps = 47/300 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + +P + L + LV E IP+ L +NK +L+D E +++ +KS
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSETKAMVDLYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GYE L S + G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYEVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GEVS K RGKHTTRH SL L ++ DTPGF+ V+ +
Sbjct: 176 FA----------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLE 225
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L FPE E + C FN C H EP C +K E RY Y + ++I
Sbjct: 226 RLPTLFPEFGEYVDT-----CKFNPCYHEHEPICGIKAALEAGHIHQGRYDAYMSIRNDI 280
>gi|157412357|ref|YP_001483223.1| GTPase [Prochlorococcus marinus str. MIT 9215]
gi|157386932|gb|ABV49637.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9215]
Length = 305
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 153/285 (53%), Gaps = 27/285 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC VR + + + VGD+V + +ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVRKSINFKDQLIYVGDQVFIENIDLKRKRALITSLKKRKNLLVRPSVANISNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++P+L + RFL+ AES G+ ++L L K +L+ + ++ WGY+ +
Sbjct: 94 TFSVEEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISDTRRFFLINKFEKWGYQAITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++E ++L+ L + + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLEKSDHFNNLIVELKKKECSIFMGPSGVGKTTLLNMIIPGLQNSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QPSLLKVTKQSLAQTF 260
VS K RGK+TTR+V L +S Y+ DTPGFN QP L V + L +
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQP--LNVDIRLLPSLY 249
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD 305
EI + L +E C F NCLHL + GC + +ERY +Y +++
Sbjct: 250 SEINKQL-IDEKINCKFRNCLHLNDEGCNLNKSFERYSFYKDMIE 293
>gi|168207264|ref|ZP_02633269.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
E str. JGS1987]
gi|170661360|gb|EDT14043.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
E str. JGS1987]
Length = 287
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 139/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRFNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L E K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTGEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY++Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYEFYIKTLEEI 281
>gi|336426128|ref|ZP_08606141.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336011086|gb|EGN41054.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 291
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ L GD V + +D I + R+ E++ P VANVD L++ +
Sbjct: 24 CKAKGIFRKDKKKPLPGDYVEIDILDETALTANISVILPRTNELIRPAVANVDQALVIMA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L RFLV E + + NK +LVDEE + + GY LF S
Sbjct: 84 AASPAPNLNLLDRFLVTMEQQKVECCICFNKQDLVDEEWKDKLRESYRNTGYRVLFTSAR 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GL+ L Q L +TT + GPSGVGKSSLIN L++
Sbjct: 144 QGEGLEELCQILTGKTTTVAGPSGVGKSSLINRLQTGI---------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+STK RGKHTTRH L+ +S Y+ DTPGF+ L + K+ L FPE +
Sbjct: 182 SMETGEISTKIERGKHTTRHSELIYVSEDTYIVDTPGFSSIELYGMEKEELQDYFPEFAD 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
EP +C F C H+ E C VK E RY+ Y QL +E++ + ++
Sbjct: 242 W----EP-ECRFTGCAHVKERDCGVKTALEQGEISRSRYENYCQLYEELKNKRKY 291
>gi|402297534|ref|ZP_10817301.1| GTPase RsgA [Bacillus alcalophilus ATCC 27647]
gi|401727209|gb|EJT00402.1| GTPase RsgA [Bacillus alcalophilus ATCC 27647]
Length = 295
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 155/300 (51%), Gaps = 41/300 (13%)
Query: 19 KTGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+ G EL+ C R + + LVGD V + + D G I ++ +R E++ PP+ANV
Sbjct: 17 QAGDELIQCRGRGNFRNRGIKPLVGDTVEYEAENKTD--GYILDIAERKNELIRPPIANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT---WKSRLHT 134
D LL+FS +P P L RFLV ES I + ++K++L+ EE + +++
Sbjct: 75 DQALLVFSALEPDFSPALLDRFLVHIESNQIEPLIIISKMDLLTEEQMGNISQYQAVYQQ 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + + + ++ LL + ++ +V+ G SGVGKSSL+N L+
Sbjct: 135 LGYRVILTTTNEEDSIEKLLPFIEERISVVAGQSGVGKSSLLNVLK-------------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D ++ST GRGKHTTRHV L+P+ G G +ADTPGF+ ++
Sbjct: 181 --PEL------DIETNQISTHLGRGKHTTRHVELIPV-GQGLIADTPGFSSLDFTQIEAG 231
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDW--ERYQYYFQLLDEI 307
L++ FPE+ L +C F C H EP C V KGD +RYQ+Y Q L+EI
Sbjct: 232 DLSEYFPEMLARLN-----QCKFRGCTHTSEPKCAVKEAVDKGDISEQRYQHYLQFLEEI 286
>gi|325261904|ref|ZP_08128642.1| ribosome small subunit-dependent GTPase A [Clostridium sp. D5]
gi|324033358|gb|EGB94635.1| ribosome small subunit-dependent GTPase A [Clostridium sp. D5]
Length = 292
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 143/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I + R E++ P VANVD L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDDVDIEILDAAEKTGNIVQILSRKNELIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV ES IP+ L NK ++ + L + GY+ +F S
Sbjct: 85 VTEPKPHFNLLDRFLVMMESKEIPVVLCFNKKDIATQPELKELQEIYRACGYQVIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + + L +TTVI GPSGVGKSSLIN L++
Sbjct: 145 NEENIGIVKDVLLGKTTVIAGPSGVGKSSLINLLQTEIQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G Y+ DTPGF+ + K L E
Sbjct: 184 -METGSISRKIARGKHTTRHSELITIDGNSYIMDTPGFSSLYVNDFEKGDLKYYIREF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A KC FN C H+ EPGC VK E RY+ Y ++ E++ ++ +
Sbjct: 241 ---APYEGKCRFNGCDHVHEPGCAVKAAVENGEIHTIRYEDYLEMYQELQEKKRY 292
>gi|440780887|ref|ZP_20959358.1| GTPase RsgA [Clostridium pasteurianum DSM 525]
gi|440221475|gb|ELP60680.1| GTPase RsgA [Clostridium pasteurianum DSM 525]
Length = 289
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 37/296 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD V++ +D D +G+I+ + R+++++ P +ANV ++F+
Sbjct: 24 CKARGKFRHKELSPLVGDNVII-DLDE-DNKGVIKEICDRTSKLIRPSIANVTQAFIIFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L +FLV E + + NK++L +E ++ S + + GYE ++ + +
Sbjct: 82 VRNPDFNMDLLNKFLVLCEVNKLKAVVCFNKIDLATKEEVDNTVSLVKSIGYETIYLNAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L + TV GPSGVGKS+++N+ I+G E
Sbjct: 142 TGYGIDKIKAHLEENITVFCGPSGVGKSTILNS-------------------IVGHSAME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G++S + RGKHTTRH LL + GGY+AD+PGF+ + + K L FPE E
Sbjct: 183 ---TGDISKRLNRGKHTTRHCELLEID-GGYVADSPGFSSLDISFIKKDQLQGCFPEFLE 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQ 314
C F+ C+H EPGC VK E RY +Y + L+EI R E++
Sbjct: 239 YYDT-----CKFSTCMHYKEPGCTVKEAVESGKINKNRYMFYIKTLEEILSRREWK 289
>gi|296185406|ref|ZP_06853816.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
gi|296050240|gb|EFG89664.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
Length = 274
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 145/279 (51%), Gaps = 33/279 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
DK VE C R + + +VGDKV I + +G+I+ ++ R +++ P VANV
Sbjct: 18 DKNVVE--CKARGKFRHNELTPMVGDKV---EITIKNGKGVIDKIYPRINKLIRPSVANV 72
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
L++F++ P++ L +FL+ E + + NK++LV +E +N + + GY
Sbjct: 73 TQALVVFALRNPEINEELLNKFLLSCEYNNLKAIVCFNKLDLVLQEEMNEIVEMVKSAGY 132
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E LF + G+D + ++L+D TV+ GPSGVGKS+++N+
Sbjct: 133 ETLFLKAKEGYGIDLIREKLQDNVTVLCGPSGVGKSTILNS------------------- 173
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I+G E GE+S K RGKHTTRH L+ + G G+L DTPGF+ + ++K+ L
Sbjct: 174 IMGE---EVMATGEISEKLRRGKHTTRHSELIDI-GNGFLVDTPGFSSLEIEFISKEDLQ 229
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296
Q FPE + C F C H EPGC VK E+
Sbjct: 230 QCFPEFDSYI-----GNCKFTGCFHYKEPGCAVKHAVEQ 263
>gi|373857272|ref|ZP_09600014.1| ribosome small subunit-dependent GTPase A [Bacillus sp. 1NLA3E]
gi|372452922|gb|EHP26391.1| ribosome small subunit-dependent GTPase A [Bacillus sp. 1NLA3E]
Length = 293
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 148/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + DR G I V +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNKVNPLVGDYVVYQAEN--DREGYILEVKERKNELVRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P+ L RFLV E I + + K++L D + + + S GY +
Sbjct: 83 AVEPEFSTTLLDRFLVLIEFNHITPIICITKMDLTDVAQKSSIAQYASDYQKAGYTVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E++LG+ L L +V G SGVGKSSL+N LR D+D IL
Sbjct: 143 SSETELGIKELTPFLEGGISVFAGQSGVGKSSLLNVLR--------PDLD-----IL--- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+ST GRGKHTTRHV L+ + G G +ADTPGF+ + + L+Q FPE
Sbjct: 187 ------TNEISTHLGRGKHTTRHVELIKV-GNGLVADTPGFSSLEFTDIEAEQLSQCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
I A E KC + C HL EP C VK R+ +Y L EI+ R+
Sbjct: 240 I-----ALEGEKCKYRGCFHLSEPKCAVKAAVLQEQIPEYRFNHYKDFLQEIKERK 290
>gi|384045169|ref|YP_005493186.1| Ribosome biogenesis GTPase rsgA [Bacillus megaterium WSH-002]
gi|345442860|gb|AEN87877.1| Ribosome biogenesis GTPase rsgA [Bacillus megaterium WSH-002]
Length = 293
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTDCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C F CLH+ EP C VK +E RY++Y ++EI+ R+
Sbjct: 240 MSRL-----SEQCKFRGCLHVKEPKCAVKEAYEQKEIPSYRYEHYLHFIEEIKQRK 290
>gi|407977634|ref|ZP_11158471.1| GTPase RsgA [Bacillus sp. HYC-10]
gi|407415887|gb|EKF37468.1| GTPase RsgA [Bacillus sp. HYC-10]
Length = 298
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 154/308 (50%), Gaps = 41/308 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESEESGKVIQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPTFSTSLLDRFLVLVEANHIKPLICITKIDLLKTEQEREAIQAYAE 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ S K G++ L ++ TV G SGVGKSSL+NA+
Sbjct: 136 DYRQIGYDVHLTSTIEKDGIEQLTPHFYNKITVFAGQSGVGKSSLLNAM----------- 184
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L K ++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 185 -----SPDLALK------TNDISSHLGRGKHTTRHVELIR-TAEGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ + L F EI+E A C F CLH+ EPGC VK E RYQ+Y +
Sbjct: 233 IEAEDLGLYFLEIRE-----RSADCKFRGCLHVKEPGCAVKDAVEHEQIREYRYQHYLEF 287
Query: 304 LDEIRIRE 311
L EI+ R+
Sbjct: 288 LAEIKDRK 295
>gi|110802523|ref|YP_699023.1| ribosome-associated GTPase [Clostridium perfringens SM101]
gi|122956631|sp|Q0SS84.1|RSGA_CLOPS RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|110683024|gb|ABG86394.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
SM101]
Length = 287
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+NA H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNAFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY++Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYEFYIKTLEEI 281
>gi|260588067|ref|ZP_05853980.1| ribosome small subunit-dependent GTPase A [Blautia hansenii DSM
20583]
gi|331082364|ref|ZP_08331490.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541594|gb|EEX22163.1| ribosome small subunit-dependent GTPase A [Blautia hansenii DSM
20583]
gi|330400850|gb|EGG80451.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 291
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 139/289 (48%), Gaps = 34/289 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D + G I ++ R ++ P VAN+D L++F+
Sbjct: 24 CKAKGIFRKEKMKPLVGDLVEIEILDEEKKLGNIVDILPRKNSLIRPAVANIDQALVIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV E IP+ + +NK +L E + K+ GY +F S
Sbjct: 84 AKEPNPNLSLLDRFLVTMERQEIPVLICINKEDLALPEEIEEIKTIYQRCGYPVIFTSAS 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L L +TT + GPSGVGKSSL N L +P
Sbjct: 144 KEKGIDELRAVLNGKTTAVAGPSGVGKSSLTNLL--APGI-------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
D GE+S K GRG+HTTRH L+ L YL DTPGF + + K+ L FPE ++
Sbjct: 182 DMETGEISKKLGRGRHTTRHSQLIELWQETYLMDTPGFTSFYVENMEKEELRYYFPEFQD 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C F C H EPGC+VK E RY+ Y ++ E+
Sbjct: 242 Y-----EGSCRFQGCTHTHEPGCMVKEALENGKISRKRYENYLEMYREL 285
>gi|354582483|ref|ZP_09001385.1| ribosome small subunit-dependent GTPase A [Paenibacillus lactis
154]
gi|353199882|gb|EHB65344.1| ribosome small subunit-dependent GTPase A [Paenibacillus lactis
154]
Length = 302
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 147/292 (50%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V+ + + G ++ + RS+E++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKRGISPLVGDRVMYSLTE--NGEGTVDEILPRSSELIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD--EEVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E G+ + L K +L D +E K GYE + S
Sbjct: 92 VKEPDLNLLLLDKFLVHIEHAGLDAVIVLTKQDLTDASDESAEKVKRMYEEIGYEVMITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G+ + RL + +V G SGVGKS+L+NAL P L +
Sbjct: 152 SLQGIGVQQVKDRLAGEISVFSGQSGVGKSTLLNALM----------------PGLALE- 194
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 195 -----TSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSSCFREF 249
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
A A+C F C HL EPGC V E RY++Y + E++
Sbjct: 250 -----APHAAECKFRGCSHLHEPGCRVIQAVEDGTIQAGRYEHYVEFFTEMK 296
>gi|421858981|ref|ZP_16291230.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410831500|dbj|GAC41667.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 151/309 (48%), Gaps = 46/309 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+ G + C R + KK LVGD VV + + G+++ + R++E++ PP+AN
Sbjct: 20 GKQGGETVQCRARGIFKKKGVSPLVGDCVVYSFTE--NGEGVVDEIDPRASELIRPPIAN 77
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLH 133
V L+FSM +P+L L +FLV E + + L K +L+D EE + R+
Sbjct: 78 VSLAALVFSMTEPELNMHLLDKFLVHIEHAEVEAVILLTKWDLLDRLPEEESARMRCRME 137
Query: 134 TW-------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
GYE + S + G + RL DQ +V G SGVGKSSL+NA+ P S
Sbjct: 138 ELIALYQRIGYEVIVTSAKGGFGYQGVADRLADQISVFAGQSGVGKSSLLNAML--PGVS 195
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+ ++S + GRGKHTTRHV LLPL GGY+ADTPGF+Q
Sbjct: 196 LETN--------------------QISQRLGRGKHTTRHVELLPLPQGGYIADTPGFSQL 235
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQY 299
L++ + + F E + + C F C H+ EPGC VK + RY++
Sbjct: 236 DFLELGVEQIGWCFREFR-----SYAGDCKFRGCTHIHEPGCRVKEAVQEGLIANSRYEH 290
Query: 300 YFQLLDEIR 308
Y DE++
Sbjct: 291 YLLFFDEMK 299
>gi|319649616|ref|ZP_08003772.1| ribosome-associated GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398778|gb|EFV79460.1| ribosome-associated GTPase [Bacillus sp. 2_A_57_CT2]
Length = 293
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 155/303 (51%), Gaps = 41/303 (13%)
Query: 20 TGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+G E++ C R + +K K LVGD+VV + + G I V +R E++ PP+ANVD
Sbjct: 18 SGDEIIQCRGRGVFRKNKVNPLVGDEVVFQAESITE--GYILEVKERKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTW 135
+L+FS +P L RFLV E I + + K++L DE + + + S
Sbjct: 76 QAILVFSAVEPGFSTSLLDRFLVLVEFNRIKPIICITKIDLTDEHGYKEIQQYASDYRKA 135
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY+ L S E++ G+ L+ L + +V G SGVGKSSL+N LR
Sbjct: 136 GYDVLLTSSETEEGVKDLMPYLEGEISVFAGQSGVGKSSLLNVLR--------------- 180
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
P L + + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + +
Sbjct: 181 -PDL------ELKTNDISSHLGRGKHTTRHVELIEV-GKGLVADTPGFSSLEFTDIELED 232
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
L FPEI+E + +C F CLH+ EP C VK E RY++Y L EI+
Sbjct: 233 LNYCFPEIQE-----KSDQCKFRGCLHMAEPKCAVKAASENGEIPSYRYEHYKTFLQEIK 287
Query: 309 IRE 311
R+
Sbjct: 288 DRK 290
>gi|448237334|ref|YP_007401392.1| ribosome biogenesis GTPase [Geobacillus sp. GHH01]
gi|445206176|gb|AGE21641.1| ribosome biogenesis GTPase [Geobacillus sp. GHH01]
Length = 293
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 149/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKNVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFGALEFDQIELDELPHYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRMYGEG-----CKFRGCLHIAEPKCAVREAVEAGEIPSYRYDHYVSFVAEMKERK 290
>gi|138894698|ref|YP_001125151.1| ribosome-associated GTPase [Geobacillus thermodenitrificans NG80-2]
gi|196247682|ref|ZP_03146384.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. G11MC16]
gi|254766802|sp|A4IM52.1|RSGA_GEOTN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|134266211|gb|ABO66406.1| GTPase [Geobacillus thermodenitrificans NG80-2]
gi|196212466|gb|EDY07223.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. G11MC16]
Length = 293
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 149/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PPVANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKVTPLVGDRVVFTATG--EAEGYILEICERQNELVRPPVANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
P L RFLV ES I + ++K++L+D +E + + GYE +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKNITPVIVISKIDLLDGGMKETIAQYVRDYRHIGYEVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L+ L + +V+ G SGVGKSSL+NALR P L
Sbjct: 143 STVTKEGLDELMSHLCGRVSVVAGQSGVGKSSLLNALR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ + L FPE
Sbjct: 184 ---QLKTGDISTHLGRGKHTTRHVELLAIA-GGLVADTPGFSALEFDHIELDELPYYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + C F CLH+ EP C V+ E RY +Y + E++ R+
Sbjct: 240 FRAYGEG-----CKFRGCLHVAEPKCAVREAAEAGDIAPYRYDHYLSFVAEMKERK 290
>gi|255282551|ref|ZP_05347106.1| ribosome small subunit-dependent GTPase A [Bryantella formatexigens
DSM 14469]
gi|255266844|gb|EET60049.1| ribosome small subunit-dependent GTPase A [Marvinbryantia
formatexigens DSM 14469]
Length = 291
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 143/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + ++ + LVGD V + +D + G IE + R ++ P VAN+D L++F+
Sbjct: 24 CRAKGIFRRDGIKPLVGDNVELNVLDETEHTGNIEKLLPRRNALIRPAVANIDQALVIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK L RFLV E + + NK ++V++E + G LF S
Sbjct: 84 AAKPKPNLNLLDRFLVAMEKQSVKSVICFNKQDIVEKEACERLREIYENCGCRVLFVSAL 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ GL + L+ +TT + GPSGVGKSSL+N L PHA
Sbjct: 144 TQEGLSGVRAILKGKTTAVAGPSGVGKSSLVNLL--VPHA-------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S K RGKHTTRH +L + +L DTPGF+ S+ + K+ L + FPE
Sbjct: 182 QMQTGAISEKIDRGKHTTRHSEILAVDNDTFLCDTPGFSSLSVWDMEKEELKEYFPEF-- 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEF 313
A C F C H EPGC VK +RY+ Y ++ DE++ + ++
Sbjct: 240 ---APWQGDCRFLGCTHTHEPGCAVKAALAEGKISRQRYENYLEMYDELKNKRKY 291
>gi|239826570|ref|YP_002949194.1| ribosome-associated GTPase [Geobacillus sp. WCH70]
gi|259495475|sp|C5D8S1.1|RSGA_GEOSW RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|239806863|gb|ACS23928.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. WCH70]
Length = 293
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + G I N+ +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVEFQATS--ETEGYIMNIRERKNWLVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ T + + + GY+ +
Sbjct: 83 AVEPDFSTRLLDRFLVLVESKHIRPIIVVNKMDLVDDQTKPTMEQYIRDYRQIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ LL L +V G SGVGKSSL+NALR P L K
Sbjct: 143 STITKLGVEQLLSYLEGHISVFAGQSGVGKSSLLNALR----------------PDLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ST GRGKHTTRHV LL + GGG +ADTPGF+ L + + L FPE
Sbjct: 187 ------TNDISTHLGRGKHTTRHVELLEI-GGGLVADTPGFSALELDDIELEELPLYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E +C F CLH+ EP C V+ E RY+ Y ++EI+ R+
Sbjct: 240 FCE-----RSEECKFRGCLHIAEPKCAVREAVESGKIPSYRYENYISFVEEIKERK 290
>gi|326790880|ref|YP_004308701.1| ribosome small subunit-dependent GTPase A [Clostridium lentocellum
DSM 5427]
gi|326541644|gb|ADZ83503.1| ribosome small subunit-dependent GTPase A [Clostridium lentocellum
DSM 5427]
Length = 298
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 130/262 (49%), Gaps = 37/262 (14%)
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G IE + +R ++ P VANVD +++FS+ P+L L RFL+ E I + LNK
Sbjct: 62 GTIEEILERKNSLIRPAVANVDQAMVVFSVSYPQLHIDLLDRFLLHIEKEDIVPYILLNK 121
Query: 117 VELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176
++ +E R GYE + S + K+ + L+ +L+++TTV GPSGVGKS+LI
Sbjct: 122 IDEGNENEYAELVERYTKIGYEVICLSAKMKINTELLMPKLQNKTTVFAGPSGVGKSTLI 181
Query: 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY 236
N + + GEVS K RGKHTTRHV L+PLS GG+
Sbjct: 182 NTIEENLKLE----------------------TGEVSDKIKRGKHTTRHVELIPLSEGGF 219
Query: 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----K 291
+ DTPGF L + L FPE L C F C HL EPGC V K
Sbjct: 220 VLDTPGFTSLQLEGMEADQLQYYFPEFDAFL-----GSCKFRGCTHLHEPGCEVIKALEK 274
Query: 292 GD-----WERYQYYFQLLDEIR 308
G+ +E Y Y++ L EIR
Sbjct: 275 GEIYEERYEAYAAYYKQLKEIR 296
>gi|18310719|ref|NP_562653.1| ribosome-associated GTPase [Clostridium perfringens str. 13]
gi|168214214|ref|ZP_02639839.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
CPE str. F4969]
gi|169342744|ref|ZP_02863784.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
C str. JGS1495]
gi|182625864|ref|ZP_02953630.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
D str. JGS1721]
gi|422346407|ref|ZP_16427321.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
WAL-14572]
gi|422874657|ref|ZP_16921142.1| GTPase RsgA [Clostridium perfringens F262]
gi|38257693|sp|Q8XJL9.1|RSGA_CLOPE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|18145400|dbj|BAB81443.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|169299250|gb|EDS81320.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
C str. JGS1495]
gi|170714287|gb|EDT26469.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
CPE str. F4969]
gi|177908898|gb|EDT71390.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
D str. JGS1721]
gi|373225952|gb|EHP48279.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
WAL-14572]
gi|380304298|gb|EIA16587.1| GTPase RsgA [Clostridium perfringens F262]
Length = 287
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY++Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYEFYIKTLEEI 281
>gi|163815231|ref|ZP_02206608.1| hypothetical protein COPEUT_01391 [Coprococcus eutactus ATCC 27759]
gi|158449426|gb|EDP26421.1| ribosome small subunit-dependent GTPase A [Coprococcus eutactus
ATCC 27759]
Length = 295
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 36/297 (12%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GV C + + + K + LVGD V + ID G I + R ++ P VANVD
Sbjct: 23 RDGVLYECKAKGVFRNKKIKPLVGDNVNIEIIDSEKDLGNIVEILPRFNSLIRPAVANVD 82
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++F++ +P+ L RFLV E + + + NK +L + + T +S + GYE
Sbjct: 83 QTIIIFAVSEPEPNFNLLDRFLVSMEKSDVKTIICFNKTDLSPDN-METCRSYSKS-GYE 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
LF S G++ L + LRD+TTV GPSGVGKSS +NA++ A
Sbjct: 141 TLFISARENEGIEELRELLRDRTTVFAGPSGVGKSSTLNAIKPEAEA------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ G VS K RGKHTTRH L+ + G Y+ DTPGF+ + + + L +
Sbjct: 188 ---------QTGAVSEKIKRGKHTTRHSELMHIEGDTYIMDTPGFSSLYVDSIEPEDLKE 238
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
FP+I A KC FN C H+ EP C+V+ E RY Y + ++++
Sbjct: 239 YFPDI-----AVYTGKCRFNMCNHISEPDCLVRKAVEDGEISRVRYDDYVMIYNDLK 290
>gi|168217024|ref|ZP_02642649.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
NCTC 8239]
gi|182380986|gb|EDT78465.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
NCTC 8239]
Length = 287
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY++Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYEFYIKTLEEI 281
>gi|403386874|ref|ZP_10928931.1| GTPase RsgA [Clostridium sp. JC122]
Length = 288
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 146/296 (49%), Gaps = 43/296 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G C R + ++GD V I D IE +++R+TE++ P VANV
Sbjct: 19 GNTYTCKARGKFRYNNLSPMIGDNV---EIKVEDNSVTIEKIYERTTELIRPVVANVTQA 75
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++F+ P L L++FL+ E + + NK++L +E++ + K L + GYE L
Sbjct: 76 FVIFAFRHPDLNRDLLSKFLLLCEYNNLNAVVCFNKMDLKNEDI-DKVKEELESAGYEVL 134
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
+ ++ LGL+ L ++++D +V GPSGVGKS+++N +G
Sbjct: 135 YLEAKNNLGLEKLKEKIKDNISVFCGPSGVGKSTILNKF-------------------IG 175
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ E GE+S K RGKHTTRH L+ G GYL DTPGF+ L + K+ L F
Sbjct: 176 REMME---TGEISGKLKRGKHTTRHSELIEF-GDGYLVDTPGFSSLELNFIPKEELQYCF 231
Query: 261 PEIKEMLKANEPA--KCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
E EP KC FNNC+H EP C VK RY +Y + L++I
Sbjct: 232 KEF-------EPYRDKCKFNNCIHHKEPSCAVKEAVNEGKIHKARYDFYIKTLEDI 280
>gi|168210630|ref|ZP_02636255.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
B str. ATCC 3626]
gi|170711303|gb|EDT23485.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
B str. ATCC 3626]
Length = 287
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEYNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY++Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYEFYIKTLEEI 281
>gi|123967555|ref|YP_001008413.1| GTPases [Prochlorococcus marinus str. AS9601]
gi|123197665|gb|ABM69306.1| Predicted GTPases [Prochlorococcus marinus str. AS9601]
Length = 305
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 154/284 (54%), Gaps = 25/284 (8%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC V+ + + + VGD+V + ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVKKSINFRDQLIYVGDEVAIEKIDLKGKRAVITSLKKRKNLLVRPSVANISNIYV 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++P+L + RFL+ AES G+ ++L L K +L+ ++ + + WGY+ +
Sbjct: 94 TFSVEEPELNLSQVNRFLISAESIGVEVSLVLTKCDLISDKRRSYLLDKFEKWGYQVITL 153
Query: 143 SVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++++ +LL L+ + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLQNSDCFKNLLADLKQKECSIFMGPSGVGKTTLLNMIIPGLENSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
VS K RGK+TTR+V L +S Y+ DTPGFN + L++ + L +
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQT-LEIDIKLLPNLYS 250
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD 305
EI + + E KC F NCLHL + GC + +ERY +Y ++++
Sbjct: 251 EIHKQI-VEEGIKCKFRNCLHLKDEGCNLNKSFERYSFYKEMIE 293
>gi|110799288|ref|YP_696423.1| ribosome-associated GTPase [Clostridium perfringens ATCC 13124]
gi|123148670|sp|Q0TPL7.1|RSGA_CLOP1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|110673935|gb|ABG82922.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
ATCC 13124]
Length = 287
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 139/289 (48%), Gaps = 38/289 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE +
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPEFND 237
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C FN C H EP C VK E RY +Y + L+EI
Sbjct: 238 YNNL-----CKFNGCNHYKEPKCAVKEAVEEGKINKLRYDFYIKTLEEI 281
>gi|226323823|ref|ZP_03799341.1| hypothetical protein COPCOM_01598 [Coprococcus comes ATCC 27758]
gi|225208007|gb|EEG90361.1| ribosome small subunit-dependent GTPase A [Coprococcus comes ATCC
27758]
Length = 295
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 141/294 (47%), Gaps = 34/294 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V +D ++ G I + R E++ P VAN+D L++F+
Sbjct: 26 CKAKGIFRKEKIKPLVGDLVEYEILDAEEKTGNIIRILPRKNELIRPAVANIDQALVVFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ + NK ++ DE + + + GY +F S
Sbjct: 86 VKKPDPHFNLLDRFLVMMERQEIPVIICFNKKDIADEPEIESLEKTYEACGYRVIFASAR 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + L+ +TT + GPSGVGKSSLIN L+ +
Sbjct: 146 EGENILEIKEALKGKTTTVAGPSGVGKSSLINCLQENV---------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G +S K RGKHTTRH L+P+ Y+ DTPGF+ K+ L FPE +
Sbjct: 184 NMETGSISRKIERGKHTTRHSELIPIDEDSYIMDTPGFSSLYTNDFGKEELKYYFPEFDQ 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C F C H+ EPGC+VK E RY+ Y ++ E+ +E+
Sbjct: 244 Y-----QGGCRFQGCNHISEPGCLVKEALEEGKVHPVRYEDYCEMYRELEQKEK 292
>gi|359411385|ref|ZP_09203850.1| ribosome biogenesis GTPase RsgA [Clostridium sp. DL-VIII]
gi|357170269|gb|EHI98443.1| ribosome biogenesis GTPase RsgA [Clostridium sp. DL-VIII]
Length = 290
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 39/290 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I + G+IE + +R +E++ P VANV ++F+
Sbjct: 24 CKARGKFRHNAIKPMVGDDV---TIKIENGEGVIEKIHERKSELIRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE L+ + +
Sbjct: 81 IKNPDINFELLNKFLILCEHNNIEVIVCLNKIDLVSEEEREEIKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L ++++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 KGIGIERLEEKIKGNITVLCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + ++ K SL FP
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIEVA-DGYIVDTPGFSTLEIKELMDKDSLKYCFP--- 234
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E L+ N+ KC F CLH EP C +K E RY++Y + L+E+
Sbjct: 235 EFLQYND--KCKFRGCLHYKEPNCAIKEAVEQGEINKYRYEFYVKTLEEV 282
>gi|238019371|ref|ZP_04599797.1| hypothetical protein VEIDISOL_01235 [Veillonella dispar ATCC 17748]
gi|237864070|gb|EEP65360.1| hypothetical protein VEIDISOL_01235 [Veillonella dispar ATCC 17748]
Length = 287
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 141/297 (47%), Gaps = 41/297 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D +G C VR LKK + +LVGD+V + G +E++ R ++ P VAN+
Sbjct: 18 DDSGTVHECKVRGRLKKGRYSLLVGDRVTIS------EDGFVESIHDRHNAMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D + + K + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSDTEDMVK-LYQSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + G+D L L + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMTGIDDLRHVLEHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDSNSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE + + C FN C H EP C +K E RY Y + ++I
Sbjct: 229 TLFPEFSDYVDT-----CKFNPCYHEHEPICGIKDALEAGHIHQGRYDAYMSIRNDI 280
>gi|374602033|ref|ZP_09675028.1| ribosome small subunit-dependent GTPase A [Paenibacillus
dendritiformis C454]
gi|374392223|gb|EHQ63550.1| ribosome small subunit-dependent GTPase A [Paenibacillus
dendritiformis C454]
Length = 305
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 151/313 (48%), Gaps = 54/313 (17%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+ G + C R + KK LVGD+VV + + G+++ + R +E++ PP+AN
Sbjct: 20 GKRGGKTVQCRARGIFKKKGVSPLVGDRVVYSFTE--NGEGVVDEIGPRESELIRPPIAN 77
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD--------------E 122
V L+FS+ +P+L L +FLV E + + L K +L+D E
Sbjct: 78 VSLAALVFSVTEPELNMQLLDKFLVHIEHAEVEAVILLTKWDLLDRLPEEESARLRRRME 137
Query: 123 EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
E++ ++ GYE + S + G + RL DQ +V G SGVGKSSL+NA+
Sbjct: 138 ELIALYRG----IGYEVIATSAKGGFGYQGVADRLADQISVFAGQSGVGKSSLLNAM--L 191
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
P S + ++S + GRGKHTTRHV LLPL GGY+ADTPG
Sbjct: 192 PGVSLETN--------------------QISQRLGRGKHTTRHVELLPLPQGGYIADTPG 231
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------- 295
F+Q L++ L F E + + C F C H+ EPGC VK +
Sbjct: 232 FSQLDFLELGVDQLGWCFREFR-----SYAGDCKFRGCTHIHEPGCRVKEGVQEGLIADS 286
Query: 296 RYQYYFQLLDEIR 308
RY++Y DE++
Sbjct: 287 RYEHYLLFFDEMK 299
>gi|238926263|ref|ZP_04658023.1| ribosome-associated GTP-binding protein [Selenomonas flueggei ATCC
43531]
gi|238885943|gb|EEQ49581.1| ribosome-associated GTP-binding protein [Selenomonas flueggei ATCC
43531]
Length = 288
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 142/294 (48%), Gaps = 40/294 (13%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
E+LC +R + + +L GD V + I + G+IE R++ +L P VAN+ +++
Sbjct: 23 EILCKLRGKSTRGRDALLPGDIVRLERISSTE--GVIEGTEPRTSLLLRPRVANLTQIVV 80
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ P P ++RFLV AE +GI + L +NK++L + + + GY L
Sbjct: 81 TVAAAAPNPHPLVVSRFLVLAEHSGIDHIVLCINKIDLAGGN-MTEFCTPYEAAGYPVLL 139
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +L +RL + TV GPSG GKSSL+NA+ SS +
Sbjct: 140 VSAVNGTGLSALQERLAGEITVFAGPSGAGKSSLLNAMDSSLALA--------------- 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
VG VS K GRG+HTTR LLP + GGY+ DTPGF Q L + LA FP
Sbjct: 185 -------VGAVSEKIGRGRHTTRRAELLPFA-GGYVVDTPGFTQQELTGIAADELADCFP 236
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
E C F C H EP C VK E RY Y LLDEIR
Sbjct: 237 EFLHF------PGCRFTPCSHSHEPNCAVKAAAEEGRLACTRYDAYIALLDEIR 284
>gi|269797915|ref|YP_003311815.1| ribosome small subunit-dependent GTPase A [Veillonella parvula DSM
2008]
gi|269094544|gb|ACZ24535.1| ribosome small subunit-dependent GTPase A [Veillonella parvula DSM
2008]
Length = 287
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 141/297 (47%), Gaps = 41/297 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LKK + +LVGD+V + G +E++ R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKKGRYSLLVGDRVTIS------EDGFVESIHGRHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ L S + G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 KVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E + C F+ C H EP C +K E RY Y + ++I
Sbjct: 229 TLFPEFGEYVDT-----CKFSPCYHEHEPICGIKAALEAGHIHQGRYDAYMSIRNDI 280
>gi|288553110|ref|YP_003425045.1| GTPase RsgA [Bacillus pseudofirmus OF4]
gi|288544270|gb|ADC48153.1| ribosome-associated GTPase [Bacillus pseudofirmus OF4]
Length = 298
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 45/298 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K + LVGD+V + + D G I +VF R E++ PP++N+D LL+FS
Sbjct: 25 CRGRGNFRKRKIKPLVGDEVEFEAENRTD--GYILDVFDRKNELVRPPISNIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E+ I + ++KV+L+ + + ++ + GY +
Sbjct: 83 AKEPDFSPLLLDRFLVHIEANNIKPVIIISKVDLLLPNELAEIKEYQKQYEAIGYTVILT 142
Query: 143 SVESKLG-----LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ +++ + +L ++DQ TVI G SGVGKSSL+N L+ P
Sbjct: 143 TNQNQSSNQTNEMVEILSCIKDQVTVIAGQSGVGKSSLLNVLK----------------P 186
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L + ++S+ GRGKHTTRHV LL + GGG +ADTPGF+ +++ + L+
Sbjct: 187 EL------EIETNQISSHLGRGKHTTRHVELLAV-GGGLIADTPGFSSLDFIEMEPEDLS 239
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
FPE+ A+ C F C H EP C VK D RY++Y LDEI+
Sbjct: 240 SCFPEM-----ASVHNLCKFRGCTHTSEPKCAVKEALVQGEIDNGRYEHYLVFLDEIK 292
>gi|452974518|gb|EME74338.1| GTPase RsgA [Bacillus sonorensis L12]
Length = 293
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGIFRKNKVTPLVGDDVVYQADN--DKEGYLLEIKERINELVRPPISNVDQAVLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV E+ I + + K++L + E+ + + GY
Sbjct: 83 AKEPNFSTSLLDRFLVLVEAKDIQPIICITKMDLAEGEIEDQIRRYAEDYRKIGYHVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + G++ ++ +D TV G SGVGKSSL+NA+ SP
Sbjct: 143 STKHGSGIEEIIPHFKDSITVFAGQSGVGKSSLLNAI--SPDL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S GRGKHTTRHV L+ +GGG +ADTPGF+ + + L TF E
Sbjct: 184 ---ELKTAGISAYLGRGKHTTRHVELIH-TGGGLVADTPGFSSLEFTGIEAEDLGYTFLE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I E + A+C F CLH+ EP C VK E RY +Y + L EI+ R+
Sbjct: 240 IGE-----KSAECKFRGCLHIKEPNCAVKKAVESGDIPSYRYDHYVEFLTEIKDRK 290
>gi|310642734|ref|YP_003947492.1| ribosome small subunit-dependent GTPase a [Paenibacillus polymyxa
SC2]
gi|386041815|ref|YP_005960769.1| putative GTPase [Paenibacillus polymyxa M1]
gi|309247684|gb|ADO57251.1| Ribosome small subunit-dependent GTPase A [Paenibacillus polymyxa
SC2]
gi|343097853|emb|CCC86062.1| putative GTPase [Paenibacillus polymyxa M1]
Length = 305
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 145/296 (48%), Gaps = 43/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L KK + LVGD+VV + + GM++ + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGLFKKKEITPLVGDRVVYELTE--NGEGMVKEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L D+ VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLKV-QEMYRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L + L Q +V G SGVGKSS++NAL +A
Sbjct: 151 LVTSTRTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNALEPGLTLETSA---------- 200
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRG+HTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 201 ------------ISNKLGRGRHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F E ++ + C F C H+ EPGC V+ E RY Y Q E++
Sbjct: 249 FREFQQYAEG-----CKFRGCTHIHEPGCKVREALEEGHISQGRYDSYLQFYQELK 299
>gi|238924690|ref|YP_002938206.1| GTPase [Eubacterium rectale ATCC 33656]
gi|259495473|sp|C4ZEV1.1|RSGA_EUBR3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|238876365|gb|ACR76072.1| GTPase [Eubacterium rectale ATCC 33656]
Length = 302
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDTVDIAVLDEEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY +F S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPQKQQELKSIYEPAGYRVMFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHVLEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE E
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPEFVE 252
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
EP C F C H+ EP C VK RY Y L +E++ R+++
Sbjct: 253 Y----EPY-CRFQGCSHINEPDCGVKEALSEGKISQVRYDNYKLLYEELKNRQKY 302
>gi|291518523|emb|CBK73744.1| ribosome small subunit-dependent GTPase A [Butyrivibrio
fibrisolvens 16/4]
Length = 295
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 135/289 (46%), Gaps = 34/289 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + I + G + + R +E++ P VANVD LL+F+
Sbjct: 25 CKAKGAFRKDKIKPLVGDDVEIDVISEEEMTGNVIRILPRKSELIRPAVANVDQALLIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ L RFL E +P+T+ NK +L DE + GY+ +F S +
Sbjct: 85 TKSPEPNLNLLDRFLCMMEEQELPITICFNKDDLADEGFQQQMRDTYEPAGYKVIFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + L+ +T+ + GPSGVGKSS++N L +
Sbjct: 145 EEAGIEIIKDVLKGKTSTVAGPSGVGKSSIVNLLTQG----------------------Q 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GEVS K GRGKHTTRH LL L Y+ DTPGF+ + KV L + FPE
Sbjct: 183 VMETGEVSEKIGRGKHTTRHSELLYLGDDTYIMDTPGFSSLFVPKVEPTDLYRLFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C F C H EP C VK E RY+ Y Q+ E+
Sbjct: 241 ---VGPAENCRFTGCAHHKEPDCGVKAAVESGEIAASRYENYLQIYSEM 286
>gi|389573299|ref|ZP_10163374.1| ribosome small subunit-dependent GTPase A [Bacillus sp. M 2-6]
gi|388426996|gb|EIL84806.1| ribosome small subunit-dependent GTPase A [Bacillus sp. M 2-6]
Length = 298
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 152/304 (50%), Gaps = 41/304 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP++NVD
Sbjct: 22 ESGKVIQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELIRPPISNVD 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHT 134
+L+FS +P L RFLV E+ I + + K++L+ + E ++ +
Sbjct: 80 QAVLVFSAAEPTFSTSLLDRFLVLVEANHIEPIICITKMDLLKTEQEREAIHAYAEDYRQ 139
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ S G++ L + TV G SGVGKSSL+NA+
Sbjct: 140 IGYDVHLTSTIEGDGIEKLTPHFHHKITVFAGQSGVGKSSLLNAM--------------- 184
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L K ++S+ GRGKHTTRHV L+ + G +ADTPGF+ + +
Sbjct: 185 -SPDLALK------TNDISSHLGRGKHTTRHVELIR-TAEGLIADTPGFSSLEFTGIEAE 236
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L F EI+E + A+C F CLH+ EPGC VK E RYQ+Y + L EI
Sbjct: 237 DLGLYFLEIRE-----KSAECKFRGCLHVKEPGCAVKEAVEDDRIRAYRYQHYLEFLTEI 291
Query: 308 RIRE 311
+ R+
Sbjct: 292 KDRK 295
>gi|292670248|ref|ZP_06603674.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia ATCC
43541]
gi|292648200|gb|EFF66172.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia ATCC
43541]
Length = 290
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 150/302 (49%), Gaps = 48/302 (15%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + +L GD VV+ I + G+IE+V QRS + P VAN+ ++
Sbjct: 24 ILCKLRGRIKKGRSDTEILPGDIVVLDRIS--PKEGVIEHVEQRSNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +G + L +NK++L E L +++ GY
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAECSGAAKIVLCINKMDLYRGDSEHFLAEYEA----AGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GLD L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 138 PVLRVSAECGTGLDELRRRLAGEITVFAGPSGAGKSSLLNAL----------------DP 181
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP GY+ DTPGF Q L +++++ L
Sbjct: 182 SLA------LVTGAVSEKIGRGRHTTRRAELLPFM-NGYVVDTPGFTQQELTEISQEKLT 234
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310
F E + C F C H EPGC VK ERY Y LLDEIR +
Sbjct: 235 ACFSEFSKY------GGCRFAPCSHSHEPGCAVKAAAAAGELSCERYDAYIALLDEIRSK 288
Query: 311 EE 312
++
Sbjct: 289 KK 290
>gi|239626552|ref|ZP_04669583.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516698|gb|EEQ56564.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 292
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D + G I+ + R+ ++ P VAN+D L++FS
Sbjct: 25 CKAKGVFRNKKIKPLVGDNVEFSVLDETEGEGNIDAILPRANALVRPAVANIDQALVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV E +P+ + NK++L D+E++ T++S GYE F S
Sbjct: 85 LTHPSPNLNLLDRFLVMMEIQQVPVIICFNKMDLGDDELMGTYRSIYEAAGYEVKFISAI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + + LR +T+V+ GPSGVGKSSL N ++ P A+
Sbjct: 145 DETGVEEVRKILRGKTSVLAGPSGVGKSSLTNCIQ--PRAA------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G++S K RGKHTTRH L + Y+ DTPGF+ + + L FPE
Sbjct: 184 -METGDISHKIERGKHTTRHSQLFYVEENTYMMDTPGFSSMFTPDLEEGELKDYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A C F C+H+GE C VK + RY Y + DE++ + +
Sbjct: 241 ---AQYEEDCRFLGCVHVGEKVCGVKEALKDGRLSRSRYGNYLLMYDELKKKRRY 292
>gi|422344982|ref|ZP_16425905.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia F0398]
gi|355376124|gb|EHG23385.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia F0398]
Length = 290
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 150/302 (49%), Gaps = 48/302 (15%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + +L GD VV+ I + G+IE+V QRS + P VAN+ ++
Sbjct: 24 ILCKLRGRIKKGRSDTEILPGDIVVLDRIS--PKEGVIEHVEQRSNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +G + L +NK++L E L +++ GY
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAECSGAARIVLCINKMDLYRGDSEHFLAEYEA----AGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GLD L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 138 PVLRVSAECGTGLDDLRRRLAGEITVFAGPSGAGKSSLLNAL----------------DP 181
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP GY+ DTPGF Q L +++++ L
Sbjct: 182 SLA------LVTGAVSEKIGRGRHTTRRAELLPFM-NGYVVDTPGFTQQELTEISQEKLT 234
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310
F E + C F C H EPGC VK ERY Y LLDEIR +
Sbjct: 235 ACFSEFSKY------GGCRFAPCSHSHEPGCAVKAAAAAGEISRERYDAYIALLDEIRSK 288
Query: 311 EE 312
++
Sbjct: 289 KK 290
>gi|374997145|ref|YP_004972644.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
orientis DSM 765]
gi|357215511|gb|AET70129.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
orientis DSM 765]
Length = 297
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 152/295 (51%), Gaps = 42/295 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + +G IE+V R E+ PP+ANVD +L+F+
Sbjct: 25 CSLRGRFRIKDQEFLPGDRVTILPKEE-ENKGTIESVAPRRNELTRPPIANVDQAILVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL----NTWK--SRLHTWGYEP 139
M PK + L R L++A + I + KV+ E VL N ++ GY
Sbjct: 84 MTSPKPDLNLLDRLLIQAADSDIEPIIVFTKVDKYQETVLQGAPNLYELTEDYRKIGYTV 143
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S ++ G+ + RL+++ +V+ GPSG GKSSL+NAL SP
Sbjct: 144 FEVSSKTGQGIPEIGDRLKNKISVLAGPSGAGKSSLVNAL--SPG--------------- 186
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
++ + G++S+KS RG+HTTRHV L+ S GG LADTPGF+ L ++ + LA
Sbjct: 187 -----KELKTGQISSKSKRGRHTTRHVELMVCS-GGLLADTPGFSSLLLPEMKRAELADY 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE + L C FN+CLH EP CV+K E RY++Y L E+
Sbjct: 241 FPEFADFL-----GGCRFNSCLHDKEPNCVIKAALEEGRISPVRYEHYLLYLKEV 290
>gi|291549486|emb|CBL25748.1| ribosome small subunit-dependent GTPase A [Ruminococcus torques
L2-14]
Length = 299
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 138/295 (46%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K + LVGD V+ +D + G I + R E++ P VAN+D L++F+
Sbjct: 32 CKAKGAFRKDGIKPLVGDDAVIEVLDEKEMTGNIIEILPRKNELIRPAVANIDQALVVFA 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK ++ + K GY +F S +
Sbjct: 92 VTKPKPHYNLLDRFLVMMERKEIPVVLCFNKTDIASHPEIAELKEVYTGCGYPVIFTSAK 151
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + L L+ +TT I GPSGVGKSSLIN L+S
Sbjct: 152 EEENISELKSLLKGKTTSIAGPSGVGKSSLINLLQSEV---------------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L FPE
Sbjct: 190 KMETGSISKKIDRGKHTTRHSELIVIGEDSYIMDTPGFSSLYVNDFEKEDLKYYFPEFTP 249
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+C FN C H+ EPGC VK E RY+ Y ++ E++ R+ +
Sbjct: 250 F-----EGQCKFNGCDHIHEPGCAVKEAVEEGKIHKIRYEDYTEMYRELKERKRY 299
>gi|410727111|ref|ZP_11365334.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
Maddingley MBC34-26]
gi|410599446|gb|EKQ53999.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
Maddingley MBC34-26]
Length = 290
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 39/287 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I +G+IE + +R ++++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDNV---TIKMEHGKGVIEEIHKRKSQLVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLILCEFNNIEVIVCLNKIDLVTEEEREEIKKRINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D L ++++ TTV GPSG GKS+LIN L ++ H
Sbjct: 141 VGIGIDGLKEKIKGNTTVFCGPSGAGKSTLINKLSNAEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
G+VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + K SL FPE +
Sbjct: 180 -METGKVSEKIGRGKHTTRHSELIEVS-DGYIVDTPGFSTLEIKDLMDKDSLKYCFPEFE 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
+ KC F CLH EP C VK + RY +Y + L
Sbjct: 238 QY-----NDKCKFRGCLHFKEPNCAVKEAVQEEKINKYRYDFYIKTL 279
>gi|51892492|ref|YP_075183.1| GTPase [Symbiobacterium thermophilum IAM 14863]
gi|51856181|dbj|BAD40339.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
Length = 292
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 149/296 (50%), Gaps = 38/296 (12%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G E+ C R + + +V GD+V V D G IE V R + PPVANVD
Sbjct: 20 GREVECRPRGKFRLDRLQVRAGDEVEVTLAP--DGEGRIEKVLPRRNCLERPPVANVDQC 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH--TWGYE 138
L++F++ +P+ + L R LV E G+ + LNK++LV+E + + RL+ GY
Sbjct: 78 LVVFTLVEPEADYLFLDRVLVHVEQAGVEPLILLNKIDLVEEADVAAF-VRLYGDLVGYR 136
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S GLD L + L +T+V+ G SGVGKS L+ AL P +D
Sbjct: 137 VLPISAAEGRGLDELRRHLAGKTSVLAGHSGVGKSRLVRAL--EPQRADV---------- 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R+G++S KS +G+HTTRHV L+PL+GGG LAD PGF + K +L
Sbjct: 185 ---------RIGDLSAKSRKGRHTTRHVELIPLTGGGLLADAPGFTYLEFQDIDKWTLRD 235
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
F E A A+C + +CLH EP C V+ E R++ Y LDE+
Sbjct: 236 CFREF-----ARYQAECRYADCLHRKEPDCAVRDAVEAGAIPESRHRNYLMFLDEV 286
>gi|28210914|ref|NP_781858.1| ribosome-associated GTPase [Clostridium tetani E88]
gi|38257540|sp|Q895P5.1|RSGA_CLOTE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|28203353|gb|AAO35795.1| GTPase [Clostridium tetani E88]
Length = 290
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 45/278 (16%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV + ID + +G IE +F+R +++ P V+N+ +++F+ P + L +F
Sbjct: 38 MVGDKVEI-EIDN-NSKGTIEKIFERKNKLIRPAVSNISQAIIVFAFKNPNINLDLLNKF 95
Query: 100 LVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
L++ E I +A NKV+LV+ EEV++ KS GYE ++ + + +G++ + +
Sbjct: 96 LLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKSA----GYEVIYLNAKEGMGIEKIRE 151
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+L+ V+ GPSG GKS++IN L +G E G++S K
Sbjct: 152 KLKGNLNVLCGPSGAGKSTIINKL-------------------VGKDVME---TGQISEK 189
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTRH L+ + G+L DTPGF+ S+ + K+ + FPE + + C
Sbjct: 190 LKRGKHTTRHSELIEVE-DGFLVDTPGFSSLSIEDIEKEEIQFLFPEFIKYING-----C 243
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
F CLH EP CVVK E RY++Y Q+++E
Sbjct: 244 KFTGCLHYKEPSCVVKNALEQGKIHKKRYEFYIQIIEE 281
>gi|387927080|ref|ZP_10129759.1| GTPase RsgA [Bacillus methanolicus PB1]
gi|387589224|gb|EIJ81544.1| GTPase RsgA [Bacillus methanolicus PB1]
Length = 293
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 150/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K + LVGD VV + + D G I + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNRITPLVGDNVVYQAENETD--GYILEIKERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++LVD EE ++ + GY+ L
Sbjct: 83 AVEPDFSTALLDRFLVLVEYNHIKPIICITKMDLVDEEKEEKIHKYAFEYRKAGYDVLLI 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G+ L+ L + +V+ G SGVGKSSL+NALR P L
Sbjct: 143 SSKKSIGVGDLIPYLEGKISVVAGQSGVGKSSLLNALR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FP+
Sbjct: 184 ---ELKTNHISSHLGRGKHTTRHVELIEI-GNGLVADTPGFSSLEFIDLEPEDLNSCFPD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ +C F CLH+ EP C VK + RY++Y + L EI+ R+
Sbjct: 240 FAVL-----SEECKFRGCLHISEPKCAVKDAVDEGKIPVYRYEHYKEFLQEIKQRK 290
>gi|194014434|ref|ZP_03053051.1| ribosome small subunit-dependent GTPase A [Bacillus pumilus ATCC
7061]
gi|194013460|gb|EDW23025.1| ribosome small subunit-dependent GTPase A [Bacillus pumilus ATCC
7061]
Length = 298
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 153/308 (49%), Gaps = 41/308 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + ++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESQESGKVVQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPAFSTSLLDRFLVLVEANHIEPIICITKMDLLKTDEERETIKAYAD 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GYE S G++ L ++ TV G SGVGKSSL+NA+ SP + D
Sbjct: 136 DYRQIGYEVHLTSTIEGDGIEKLTPHFHNKITVFAGQSGVGKSSLLNAM--SPELALKTD 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 194 --------------------DISSHLGRGKHTTRHVELIR-TADGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ + L F +I+ + A C F CLH+ EPGC +K E RYQ+Y +
Sbjct: 233 IEAEDLGLYFLDIR-----DRSADCKFRGCLHVKEPGCAIKDAVEHDQIKEYRYQHYLEF 287
Query: 304 LDEIRIRE 311
L EI+ R+
Sbjct: 288 LTEIKDRK 295
>gi|389577292|ref|ZP_10167320.1| ribosome small subunit-dependent GTPase A [Eubacterium
cellulosolvens 6]
gi|389312777|gb|EIM57710.1| ribosome small subunit-dependent GTPase A [Eubacterium
cellulosolvens 6]
Length = 294
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 34/299 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N G C + + +K ++ LVGD V + ID + + + R ++ P VAN
Sbjct: 16 NTADGETYECKAKGIFRKKGQKPLVGDLVEIDIIDEEKKVANVTEILPRKNALIRPAVAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD ++ F++ P + L RFL+ +P+ + NK +L ++E W+ + G
Sbjct: 76 VDQAMVFFALRSPNPDATLLDRFLIMMARQEVPVFICFNKRDLAEDEEARRWEEIYTSCG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ + + + G D + RL +TTVI GPSG GKS+ N ++S H
Sbjct: 136 YDVMLIAAGKEEGTDEVRSRLMGKTTVIAGPSGAGKSTFTNLMQSEVH------------ 183
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G++S K GRGK+TTRH LLP+ + DTPGF + + + L
Sbjct: 184 ----------METGDISKKLGRGKNTTRHAELLPIGHETFFCDTPGFTSMDIPDMEPEEL 233
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIR 308
Q FPE EP C F C H+ EP C VK ERY+ Y + +E++
Sbjct: 234 QQYFPE----FAPYEPG-CRFQGCAHIHEPSCGVKEALAEQKICKERYENYCRFYEELQ 287
>gi|399889947|ref|ZP_10775824.1| GTPase RsgA [Clostridium arbusti SL206]
Length = 288
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 145/282 (51%), Gaps = 38/282 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V+ ID +G I+ + R++E++ P +ANV ++F++ QP L +F
Sbjct: 38 LVGDNVL---IDLDKDKGFIKEILTRTSELIRPAIANVTQAFIVFAVRQPDFNMDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E + + + NK++L + L S + + GYE ++ + +++ G++ + L
Sbjct: 95 LILCEINKLKVVICFNKIDLATDANLEETVSLVKSIGYEIIYLNAKAEKGIEEIKSHLEG 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV GPSGVGKS+++N+ ILG E G +S + RG
Sbjct: 155 NVTVFCGPSGVGKSTILNS-------------------ILGHSAME---TGAISERLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
KHTTRH L+ + GGY+AD+PGF+ + + K+SL FPE + +C F+
Sbjct: 193 KHTTRHCELIEID-GGYVADSPGFSSLDIGFIKKESLQLCFPEFNKYYD-----ECKFST 246
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQ 314
C+H EP C VK E RY +Y + L+EI R E++
Sbjct: 247 CMHYKEPACAVKKAVEAGEINNNRYNFYVKTLEEILNRREWK 288
>gi|317129254|ref|YP_004095536.1| ribosome small subunit-dependent GTPase A [Bacillus
cellulosilyticus DSM 2522]
gi|315474202|gb|ADU30805.1| ribosome small subunit-dependent GTPase A [Bacillus
cellulosilyticus DSM 2522]
Length = 294
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 145/293 (49%), Gaps = 39/293 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V + + D G + V +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGNFRKRKITPLVGDWVEFEAENKTD--GYLLEVNERKNELIRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++P L RFLV E+ I + ++K++L+++ E + +KS + YE +
Sbjct: 83 TEEPAFSSLLLDRFLVHVEANQISPIICMSKIDLLEKVKGEEMQQYKSYYKSLDYEVVST 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + ++ L L +V G SGVGKSSL+NALR + A
Sbjct: 143 SIFVEETIEDLRPYLIGHVSVFAGQSGVGKSSLLNALRPELNIETAP------------- 189
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S GRGKHTTRHV L+ + GGY+ADTPGF+ + + L+ FPE
Sbjct: 190 ---------ISKHLGRGKHTTRHVELIKIDEGGYVADTPGFSSLDFQGMEAEDLSLYFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
++ N C F C H+ EP C VK RY++Y Q LDEI+
Sbjct: 241 MR-----NRINDCKFRGCTHVNEPKCAVKEAVSSAEIATYRYEHYLQFLDEIK 288
>gi|147678115|ref|YP_001212330.1| GTPase [Pelotomaculum thermopropionicum SI]
gi|146274212|dbj|BAF59961.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
Length = 294
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 150/298 (50%), Gaps = 44/298 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C++R + R+VLVGD+V + R G+IE V R T ++ PPVANVD +++F+
Sbjct: 31 CLLRGRFRYENRQVLVGDRVYLKPRH--GRAGVIEEVLPRRTVLVRPPVANVDQAVIVFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ P P L RFLV I + NKV+L + E+++ ++ R Y +
Sbjct: 89 VKDPDPSPRLLDRFLVVVHMNKIEPLICFNKVDLAESGRIELISRYRER-----YRVVAT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S S GL L + LR + +V GPSGVGKS+++NA+ P L K
Sbjct: 144 SARSGEGLSLLRESLRGRVSVFAGPSGVGKSTILNAIL----------------PGLNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RG+HTTRHV L+ L GG +ADTPGF+ L + + LA FPE
Sbjct: 188 ------TGEISAKLKRGRHTTRHVELVALPEGGLVADTPGFSSLDLPDLKPEELAGCFPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
I+ + C F CLH EP C VK + RY+ Y + ++E+ R +
Sbjct: 242 IEAYQEG-----CYFAGCLHYREPRCAVKEAVGKGLIEESRYRQYVEFVEELMDRRRY 294
>gi|78042965|ref|YP_360309.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|123576136|sp|Q3AC25.1|RSGA_CARHZ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|77995080|gb|ABB13979.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 290
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 150/295 (50%), Gaps = 46/295 (15%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD +LL+F
Sbjct: 23 MCKARGKFKKDNIKILTGDRVIIREL-VPNSEGVIESLLPRKNELIRPPIANVDQVLLVF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLF 141
+ P + R LV A + + + L NK +LV+ E + +K L P
Sbjct: 82 AFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKIL------PKV 135
Query: 142 CSVESK--LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
++ ++ G+D L L + +V+ GPSGVGKS+LIN R P A A
Sbjct: 136 VAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLIN--RLVPGAKLAT---------- 183
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GEVS K RG+HTTRHV L+ L GG++ADTPGF+ +L ++ K L
Sbjct: 184 ----------GEVSPKIKRGRHTTRHVELIKLPFGGFIADTPGFSNLTLPEMDKLELQSY 233
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE + K C F NCLH+ EP C V+ E RY+ Y L+EI
Sbjct: 234 FPEFNQNRKY-----CYFPNCLHVKEPNCRVRELLETGEIPPFRYENYLTFLEEI 283
>gi|308069670|ref|YP_003871275.1| GTPase engC [Paenibacillus polymyxa E681]
gi|305858949|gb|ADM70737.1| Probable GTPase engC [Paenibacillus polymyxa E681]
Length = 305
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 43/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM+E + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDRVVYELTE--NGEGMVEEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L D+ VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLNTIICLTKRDLYEGSPSEDDTVLAV-QEMYRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L + L Q +V G SGVGKSS++NAL +A
Sbjct: 151 LVTSARTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNALEPGLTLETSA---------- 200
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 201 ------------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F E ++ + C F C H+ EP C V+ E RY Y Q E++
Sbjct: 249 FREFQQYAEG-----CKFRGCTHIHEPSCKVREALEEGHISQGRYDSYLQFYQELK 299
>gi|291526154|emb|CBK91741.1| ribosome small subunit-dependent GTPase A [Eubacterium rectale DSM
17629]
Length = 302
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDIVDIAVLDDEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY LF S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPKEQQELKSIYEPAGYRVLFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHILEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE E
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPEFVE 252
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
EP C F C H+ EP C VK RY Y L +E++ R+++
Sbjct: 253 Y----EPY-CRFQGCSHINEPDCGVKEALSEGKISQVRYDNYKLLYEELKNRQKY 302
>gi|291527112|emb|CBK92698.1| ribosome small subunit-dependent GTPase A [Eubacterium rectale
M104/1]
Length = 302
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDIVDIAVLDDEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY LF S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPKEQQELKSIYEPAGYRVLFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHILEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE E
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPEFVE 252
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK---GDWE----RYQYYFQLLDEIRIREEF 313
EP C F C H+ EP C VK D + RY Y L +E++ R+++
Sbjct: 253 Y----EPY-CRFQGCSHINEPDCGVKEALADGKISQVRYDNYKLLYEELKNRQKY 302
>gi|401679850|ref|ZP_10811774.1| ribosome small subunit-dependent GTPase A [Veillonella sp. ACP1]
gi|400218977|gb|EJO49848.1| ribosome small subunit-dependent GTPase A [Veillonella sp. ACP1]
Length = 287
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 145/301 (48%), Gaps = 41/301 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +EN+ R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVENILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKYDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI-RIREEF 313
L FPE + ++A C FN C H EP C +K ++ + D IR++
Sbjct: 226 RLPTLFPEFSDYVEA-----CKFNPCYHEHEPICGIKEALANHKIFESRYDAYTNIRKDI 280
Query: 314 Q 314
Q
Sbjct: 281 Q 281
>gi|260437312|ref|ZP_05791128.1| ribosome small subunit-dependent GTPase A [Butyrivibrio crossotus
DSM 2876]
gi|292810224|gb|EFF69429.1| ribosome small subunit-dependent GTPase A [Butyrivibrio crossotus
DSM 2876]
Length = 292
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V++ I + G I ++ R E++ P VAN+D ++++F+
Sbjct: 25 CKAKGVFRNKKIKPLVGDNVLIDVISDSEHTGNITDILPRKNELIRPAVANIDQVMIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ L+RF+V E I + NK + VD E L+ G + SV+
Sbjct: 85 SLSPEPNFNLLSRFIVMMEYNRIDTVICFNKTDQVDSESLDKMVKDFSGCGSRIITSSVK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + + L+++TT + GPSGVGKSS++N++ P A
Sbjct: 145 ENKGIDEIREVLQNKTTALAGPSGVGKSSILNSV--FPEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ R GE+S K RGKHTTRH + ++G ++ DTPGF V + L F E E
Sbjct: 183 ESRTGEISEKINRGKHTTRHTEIFNITGDTFVLDTPGFTSLDYNVVEDKDLRFYFNEFTE 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
KC FN C+H+ EP C VK RY+ Y + +E++ + ++
Sbjct: 243 Y-----EGKCRFNGCVHVNEPDCAVKAAVTEGRISELRYKIYTDMYNELKNKRKY 292
>gi|390453290|ref|ZP_10238818.1| GTPase engC [Paenibacillus peoriae KCTC 3763]
Length = 305
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 145/296 (48%), Gaps = 43/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM++ + +R TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDQVVYELTE--NGEGMVKEIRKRVTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L D+ VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLAVQEI-YRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L L Q +V G SGVGKSS++NAL+ +A
Sbjct: 151 LVTSARTGEGTAELKNLLAGQISVFSGQSGVGKSSMLNALQPGLMLETSA---------- 200
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 201 ------------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F E ++ ++ C F C H+ EPGC V+ E RY Y Q E++
Sbjct: 249 FREFQQYAES-----CKFRGCTHIHEPGCKVREAVEEGHISQGRYDSYLQFYQELK 299
>gi|383754582|ref|YP_005433485.1| putative ribosome biogenesis GTPase RsgA [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366634|dbj|BAL83462.1| putative ribosome biogenesis GTPase RsgA [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 300
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 146/293 (49%), Gaps = 41/293 (13%)
Query: 26 CVVRALLKKIKRR--VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R KK ++ V+ GDKV++ + D G++E R + + P VANV ++L
Sbjct: 27 CKLRGKFKKTRKSQGVVTGDKVMISRLP--DGTGVVEEQLPRESLLRRPAVANVTQVVLT 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
F+ QP L P L RFLV AE +G+P + + +NK +L + ++ + + S GY+ L
Sbjct: 85 FAAAQPDLHPLLLNRFLVLAEWSGLPHIVICVNKADLYEGDMAD-FLSLYEQAGYKVLRV 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + K G++ L Q L +TTV GPSGVGKSSL+N + S +
Sbjct: 144 SAQEKQGMEELRQVLAGETTVFAGPSGVGKSSLLNVIDESLELA---------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTR LLP GG ++ DTPGF+ L ++ LA FPE
Sbjct: 188 ------TGHVSDKIKRGRHTTRVAELLPYEGG-FIVDTPGFSAMELGEIPLADLAHYFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
+ L KC F C H EP C +K ERY Y + EI+
Sbjct: 241 FRPYL-----GKCRFAPCSHTHEPDCGIKEALAAGEISQERYDAYLTIYKEIQ 288
>gi|375309200|ref|ZP_09774481.1| GTPase engC [Paenibacillus sp. Aloe-11]
gi|375078509|gb|EHS56736.1| GTPase engC [Paenibacillus sp. Aloe-11]
Length = 305
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 145/296 (48%), Gaps = 43/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM++ + +R TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDQVVYELTE--NGEGMVKEIRKRVTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L D+ VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLAVQEI-YRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L L Q +V G SGVGKSS++NAL+ +A
Sbjct: 151 LVTSARTGEGTAELKNLLAGQISVFSGQSGVGKSSMLNALQPGLTLETSA---------- 200
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 201 ------------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F E ++ ++ C F C H+ EPGC V+ E RY Y Q E++
Sbjct: 249 FREFQQYAES-----CKFRGCTHIHEPGCKVREAVEEGHISQGRYDSYLQFYQELK 299
>gi|403745322|ref|ZP_10954260.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121550|gb|EJY55843.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
hesperidum URH17-3-68]
Length = 292
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 147/298 (49%), Gaps = 47/298 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK VLVGDKV+ I + G+I V R+TE++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKKRGTTVLVGDKVLYEPIG--NNEGVIGEVLPRTTELVRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
P L + L + LV A G+ T+ L K +LV EE++ ++ GYE
Sbjct: 83 FVTPDLNLYMLDKTLVAAALAGVEPTVVLTKSDLVVSERAEEIVKLYRG----IGYETYA 138
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+ + G+ + RL+ + +V GPSG GKS+L NAL H
Sbjct: 139 IAAKFGSGVAQIRARLKGRISVFAGPSGAGKSTLANALLPGLHL---------------- 182
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ GEVS K GRGK TTRHV L + ++AD PGF+Q L++ + L + F
Sbjct: 183 ------QTGEVSEKIGRGKQTTRHVELFQMDAESWVADAPGFSQLQ-LELASRDLREYF- 234
Query: 262 EIKEMLKANEPAK-CSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
L EPA+ C + CLHL E GC VK E RY Y QL EIR +E
Sbjct: 235 -----LDFTEPAQACGYRGCLHLDEEGCGVKDAVERSQIALSRYASYRQLYHEIREQE 287
>gi|220931840|ref|YP_002508748.1| ribosome small subunit-dependent GTPase A [Halothermothrix orenii H
168]
gi|219993150|gb|ACL69753.1| ribosome small subunit-dependent GTPase A [Halothermothrix orenii H
168]
Length = 282
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 143/286 (50%), Gaps = 42/286 (14%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+KR+V GD V V MIE ++ R+ + P VANVD +L++ S+ P
Sbjct: 30 KVKRKVYPGDFVKVND-------AMIEKLYPRTNLLFRPAVANVDQVLVIHSIQNPPFAR 82
Query: 94 FALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152
L +FL+ E+ G+ + +NK++L V + L GY+ SV+ K+GL+
Sbjct: 83 KMLDKFLIMVEAIGVKPVIIINKIDLKVPDIELEKEMKDYKEEGYQVYLISVKEKMGLNE 142
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
L L ++ +V+ GPSGVGKSSLI AL P A ++GEV
Sbjct: 143 LYLTLEEKLSVLAGPSGVGKSSLIKAL--VPEAR--------------------VKIGEV 180
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272
S K RG HTTRHV LLP++ GG++ADTPGF+ L + ++L FP + A
Sbjct: 181 SQKLKRGVHTTRHVELLPINKGGWIADTPGFSALDLRGILSENLRFYFPGL-----ARYE 235
Query: 273 AKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
+C F C H EPGC VK +RY Y + ++ RE
Sbjct: 236 GQCKFRGCTHTHEPGCQVKKAVKEGMISEKRYNSYLNIYRDLEERE 281
>gi|310659152|ref|YP_003936873.1| EngC [[Clostridium] sticklandii]
gi|308825930|emb|CBH21968.1| EngC [[Clostridium] sticklandii]
Length = 297
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K ++GD V + +D V ++GMIE+V +RS+ + PP+ANV LL+F+
Sbjct: 27 CRARGIFRKDSISPVIGDVVEMTVVDPVTKKGMIESVKERSSYLFRPPIANVTKALLIFA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ + RF+V AE + +T+ NKV+L E + GY + SV+
Sbjct: 87 VKSPEPNLSLIDRFIVLAERERLDITICFNKVDLDTEGKYEDYVKIYERAGYTVIAASVK 146
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
L + +D TVI GPSGVGKSSL+N + +P L K
Sbjct: 147 HDLDFQKIKDEFKDNITVIAGPSGVGKSSLLNKI----------------DPKLNLK--- 187
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
++S K RG+HTTR+ L+ L +ADTPGF+ +L + + L + F E E
Sbjct: 188 ---TSQISEKLQRGRHTTRYAQLIELEENALVADTPGFSSLNLDLIDEVELKEYFVEFHE 244
Query: 266 MLKANEPAKCSFN-NCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIR 308
+C F C+H EPGC VK +RY+ Y QLL EIR
Sbjct: 245 Y-----DHECKFGFKCIHENEPGCKVKQAVLDKEIPNQRYESYLQLLKEIR 290
>gi|157692258|ref|YP_001486720.1| ribosome-associated GTPase [Bacillus pumilus SAFR-032]
gi|254766351|sp|A8FD43.1|RSGA_BACP2 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|157681016|gb|ABV62160.1| ribosome-associated GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 298
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 152/308 (49%), Gaps = 41/308 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + ++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESQESGKVVQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPTFSTSLLDRFLVLVEANHIEPIICITKMDLLKTDEERETIMAYAD 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GYE S G++ L ++ TV G SGVGKSSL+NA+ SP + D
Sbjct: 136 DYRQIGYEVHLTSTIEGDGIEKLTPHFHNKITVFAGQSGVGKSSLLNAM--SPELALKTD 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 194 --------------------DISSHLGRGKHTTRHVELIR-TANGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ + L F +I+ + C F CLH+ EPGC +K E RYQ+Y +
Sbjct: 233 IEAEDLGLYFLDIR-----DRSGDCKFRGCLHVKEPGCAIKDAVEHDQIKEYRYQHYLEF 287
Query: 304 LDEIRIRE 311
L EI+ R+
Sbjct: 288 LTEIKDRK 295
>gi|297583990|ref|YP_003699770.1| ribosome small subunit-dependent GTPase A [Bacillus
selenitireducens MLS10]
gi|297142447|gb|ADH99204.1| ribosome small subunit-dependent GTPase A [Bacillus
selenitireducens MLS10]
Length = 294
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 141/292 (48%), Gaps = 39/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VGD V + + D G I + +R +++ PPVANV+ +L+FS
Sbjct: 25 CRARGNFRNRKITPYVGDWVEYEAENHTD--GYILAIDERENQLVRPPVANVEQAVLIFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++ PK P L RFLV E+ GI + ++K +L + E L ++ GY L
Sbjct: 83 VEDPKFSPVLLDRFLVHVEANGIEPLICMSKTDLNHDGIREELEYFEDAYTRIGYRVLRT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + ++ L L D+ +V G SGVGKSSL+N L+ P D
Sbjct: 143 SIYLEETIEQLKPYLTDRVSVFAGQSGVGKSSLLNILK--PGVEIKTD------------ 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E S GRGKHTTRHV L+PL+ GGY+ADTPGF+ + L FPE
Sbjct: 189 --------ETSKSLGRGKHTTRHVELIPLNEGGYVADTPGFSSLDFTGIEAIHLGDCFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+E+ C F C H+ EP C VK ERY++Y + +EI
Sbjct: 241 FQEL-----SHDCKFRGCQHINEPKCRVKAAVDEGQVTKERYEHYVEFHEEI 287
>gi|197302402|ref|ZP_03167458.1| hypothetical protein RUMLAC_01130 [Ruminococcus lactaris ATCC
29176]
gi|197298523|gb|EDY33067.1| ribosome small subunit-dependent GTPase A [Ruminococcus lactaris
ATCC 29176]
Length = 292
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 146/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K + LVGD+V + +D ++ G + + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGSFRKNGIKPLVGDEVELEVLDEEEKIGNVTKILPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK +L + + + + GY LF S +
Sbjct: 85 VTEPKPHYNLLDRFLVMMERKEIPVILCFNKTDLAEHPEIAELEEVYASCGYPVLFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ L Q L+ +TT I GPSGVGKSSLIN L+S
Sbjct: 145 KEENIEKLKQMLKGKTTSIAGPSGVGKSSLINLLQSGVQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ +S Y+ DTPGF+ + K+ L FPE
Sbjct: 184 -METGSISRKIARGKHTTRHSELIMISPDSYIMDTPGFSSLYVNDFEKEELKYYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+ KC FN C H+ EPGC VK E RY+ Y ++ E++ ++ +
Sbjct: 241 ---SPYEGKCRFNGCDHIHEPGCAVKEAVESGAIHKIRYEDYTEMYRELKEKKRY 292
>gi|251797734|ref|YP_003012465.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. JDR-2]
gi|247545360|gb|ACT02379.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. JDR-2]
Length = 308
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 152/306 (49%), Gaps = 45/306 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R + KK LVGD VV + + G +E + RS+E++ PPVANVD
Sbjct: 30 GQTVQCRARGVFKKRGLTPLVGDDVVYSLTE--NGEGTVEELLPRSSELIRPPVANVDLA 87
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-------VDEEVLNTWKSRLH 133
+L+FS+ +P L L +FLV E +GI L L+K +L + +R++
Sbjct: 88 ILVFSVTEPTLNLQLLDKFLVHIEHSGIEAVLCLSKQDLEQNGEETEEAIAAAEAVNRIY 147
Query: 134 TW-GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
T GYE S +G++ L RL+ V G SGVGKSSL+NAL
Sbjct: 148 TAIGYEVYGTSSRQGVGVEELHDRLKGHVAVFAGQSGVGKSSLLNALV------------ 195
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
P L + E+S + GRGKHTTRHV L+ + GGGY+ADTPGF+Q ++
Sbjct: 196 ----PGL------ELETNEISNRLGRGKHTTRHVELVEI-GGGYVADTPGFSQLDFTELG 244
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
+ L F E++E+ C F C H+ EPGC V E R+Q Y +
Sbjct: 245 IEDLGYCFREMREL-----APDCKFRACTHVHEPGCAVLKAVEEGSIAPSRHQNYLTFMT 299
Query: 306 EIRIRE 311
E++ R+
Sbjct: 300 EMKERK 305
>gi|419760426|ref|ZP_14286705.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
H17ap60334]
gi|407514529|gb|EKF49344.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
H17ap60334]
Length = 287
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 158/296 (53%), Gaps = 39/296 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG E LC +R K+ K R +VGD V I V + G+IEN+ R E+ P +AN+D
Sbjct: 21 ETGEEFLCKLRGKFKEQKIRPIVGDLVEYRPI--VSKEGVIENILNRKNELPRPKIANID 78
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ S+ +P++ L ++LV E+ +P + LNK++L+ +E +N +K+ ++ Y
Sbjct: 79 QVVVVTSLRKPEVPLQILDKYLVLVENAKLPAVIVLNKIDLLTKEEINKFKN-IYEKIYP 137
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F S ++K G++ L + +++ + + G SGVGKSS++NA+ +P S
Sbjct: 138 VYFVSAKTKEGIEELKEIFKNKISTMAGMSGVGKSSILNAI--NPGLS------------ 183
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+V EVS K RG+HTT + L+ GG++ADTPGF + + ++ L +
Sbjct: 184 --------LKVNEVSEKLDRGRHTTTVIELMHFDFGGWIADTPGFANLDISHIEQEDLKR 235
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE C F +C H+ EPGC VK E RY+ Y Q+ ++
Sbjct: 236 FFPEFSGFY-------CLFPDCNHVDEPGCGVKKAVEEGKISKTRYESYLQIYKQL 284
>gi|410456983|ref|ZP_11310830.1| GTPase RsgA [Bacillus bataviensis LMG 21833]
gi|409926957|gb|EKN64108.1| GTPase RsgA [Bacillus bataviensis LMG 21833]
Length = 293
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + ++ G I V +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDEVVFQAENNLE--GYILEVKERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++L +++ ++ + + GYE +
Sbjct: 83 AVEPDFSTVLLDRFLVLVEFNHIEPLICITKMDLTNQDQKKQISEYAEQYKRAGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E++ G++ L + ++ +V G SGVGKSSL+N LR P L
Sbjct: 143 SSETEAGIELLNPHIENKISVFAGQSGVGKSSLLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + L FPE
Sbjct: 184 ---ELKTNGISSHLGRGKHTTRHVELIRI-GNGLIADTPGFSSLEFTNIDAEDLTYCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
++ KA+E C F CLH+ EP C VK E RY++Y L EI+ R+
Sbjct: 240 LQ---KASE--NCKFRGCLHVTEPKCGVKPAVESGEIPAYRYEHYLDFLQEIKDRK 290
>gi|429759374|ref|ZP_19291873.1| ribosome small subunit-dependent GTPase A [Veillonella atypica KON]
gi|429179650|gb|EKY20889.1| ribosome small subunit-dependent GTPase A [Veillonella atypica KON]
Length = 287
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 145/301 (48%), Gaps = 41/301 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D + +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKCDVGDASTDALIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKVTAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEF 313
L FPE + ++A C FN C H EP C +K ++ + D IR++
Sbjct: 226 RLPTLFPEFSDYVEA-----CKFNPCYHEHEPICGIKEALANHKIFESRYDAYTNIRKDI 280
Query: 314 Q 314
Q
Sbjct: 281 Q 281
>gi|331091580|ref|ZP_08340416.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403607|gb|EGG83163.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_46FAA]
Length = 292
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K ++LVGD V + ++ + G + + R E++ P V+N+D L++F+
Sbjct: 25 CKAKGAFRKEKVKLLVGDNVEIDILNEEKKLGNVVKLLPRENELIRPAVSNIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV ES IP+ L NK ++ +E+ + + + GY +F S +
Sbjct: 85 ITKPKPHFNLLDRFLVMMESKKIPIVLCFNKKDIAEEKEIRELEEIYSSCGYHIIFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN +S
Sbjct: 145 EEENIKLVKEVLKGKTTAVAGPSGVGKSSLINLFQSEIQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+P+ Y+ DTPGF+ + K+ L FPE ++
Sbjct: 184 -METGCISEKIERGKHTTRHSELIPIDDNSYIMDTPGFSSLYVNDFEKEELKYYFPEFEQ 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C FN C H+ EP C VK E RY+ Y ++ E++
Sbjct: 243 Y-----EGLCKFNGCDHIHEPNCAVKQAVEEGKIHKVRYENYIEMYKELQ 287
>gi|182420434|ref|ZP_02951653.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum
5521]
gi|237667587|ref|ZP_04527571.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182375720|gb|EDT73320.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum
5521]
gi|237655935|gb|EEP53491.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 290
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 39/290 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I + +G+IE + +R++E++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDNV---TIQIENGKGVIEEIHKRTSELVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLVLCEYNNIEVIVCLNKIDLVSEEEREEIKKRINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L +++ TV GPSG GKS+LIN L H
Sbjct: 141 QGIGIERLKEKMNGNVTVFCGPSGAGKSTLINQLADKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
+ G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -MQTGNVSEKLGRGKHTTRHSELIEVA-QGYIVDTPGFSTLEIKDLMDKNSLKYCFPEFS 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E C + CLH EP C +K E RY +Y + L+EI
Sbjct: 238 EY-----NDNCKYRGCLHYKEPKCALKDAVEDGKVNKYRYDFYVKSLEEI 282
>gi|167630207|ref|YP_001680706.1| GTPase [Heliobacterium modesticaldum Ice1]
gi|167592947|gb|ABZ84695.1| GTPase, putative [Heliobacterium modesticaldum Ice1]
Length = 303
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 141/287 (49%), Gaps = 36/287 (12%)
Query: 32 LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKL 91
LK R L GD+V + ++ +G+IE V R E+L PPVANVD +LL+F++ P
Sbjct: 37 LKGDDRVFLPGDQVRICVME--GDKGVIEGVLPRRNELLRPPVANVDQVLLVFALAAPDP 94
Query: 92 EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
+ + R LV A GI L NK ++ E + ++ S L+
Sbjct: 95 DFVLVDRLLVLAAHAGIQPVLVWNKADIASPERVAQVQALYRDISIAQFVLSARQGENLE 154
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
L L D+ +V+ GPSG GKS+L+NAL +P S + GE
Sbjct: 155 GLKGLLEDRISVVAGPSGAGKSTLLNAL--APGLS--------------------LKTGE 192
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271
VS K GRG+HTTRHV L+PL+ G +ADTPGF+ L ++ Q L + FPE+ L
Sbjct: 193 VSAKIGRGRHTTRHVELIPLASGALVADTPGFSTLYLPDISPQDLPELFPEMVPHL---- 248
Query: 272 PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C F +CLH EP C V E RY +Y L+E+ RE
Sbjct: 249 -GSCRFASCLHKTEPDCAVIEAVEAGQIHRQRYDHYLMFLNELIERE 294
>gi|217077832|ref|YP_002335550.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
TCF52B]
gi|217037687|gb|ACJ76209.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
TCF52B]
Length = 287
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 157/296 (53%), Gaps = 39/296 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG E LC +R K+ K R +VGD V I V + G+IEN+ R E+ P +AN+D
Sbjct: 21 ETGEEFLCKLRGKFKEQKIRPIVGDIVEYSPI--VSKEGVIENILNRKNELPRPKIANID 78
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ S+ +P++ L ++LV E+ +P + LNK++L+ +E +N +K ++ Y
Sbjct: 79 QVVVVTSLRKPEVPLQILDKYLVLVENAKLPAVIVLNKIDLLTKEEINKFKY-IYEKIYP 137
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F S ++K G++ L + +++ + + G SGVGKSS++NA+ +P S
Sbjct: 138 VYFVSAKTKEGIEELKEVFKNKISTMAGMSGVGKSSILNAI--NPGLS------------ 183
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+V +VS K RG+HTT + L+ GG++ADTPGF + + + L +
Sbjct: 184 --------LKVNDVSEKLDRGRHTTTVIELMHFDFGGWIADTPGFANLDISHIEHEELKR 235
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE + C F +C H+ EPGC VK E RY+ Y Q+ ++
Sbjct: 236 LFPEFNDFY-------CLFPDCNHVDEPGCGVKKAVEEGKISKTRYESYLQIYKQL 284
>gi|111074983|gb|ABH04841.1| GTPase EngC [Heliobacillus mobilis]
Length = 273
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 142/287 (49%), Gaps = 36/287 (12%)
Query: 32 LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKL 91
LK+ R L GD+V + I D+ G+IE+V+ R TE+L PP+ANVD +LL+F++ P
Sbjct: 7 LKENNRVFLPGDRVRI-RIREGDK-GVIEDVYPRRTELLRPPIANVDQVLLVFALANPDP 64
Query: 92 EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
+ L R L+ A G+ + K +L +++ +P S + L+
Sbjct: 65 DFVLLDRLLILASQGGVEPVIVFTKADLAHPQMIEKINELYSAIDVKPFVVSSKQPDTLE 124
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
+ L + +V+ GPSG GKS+L+N L SP S + G+
Sbjct: 125 PVRSLLDGKISVVAGPSGAGKSTLLNGL--SPGLS--------------------LKTGD 162
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271
VS+K GRG+HTTRHV LL L G +ADTPGF+ L + L FPE+ E L
Sbjct: 163 VSSKIGRGRHTTRHVELLVLPTGALIADTPGFSTLFLPDIPAYELGSYFPEMTEFLGC-- 220
Query: 272 PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C FN CLH EP C V+ E RY +Y L+E+ RE
Sbjct: 221 ---CRFNTCLHKAEPDCAVREALEKGLIHEQRYAHYLIFLNELVERE 264
>gi|313893414|ref|ZP_07826986.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442055|gb|EFR60475.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 158 str. F0412]
Length = 287
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 141/292 (48%), Gaps = 47/292 (16%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+D ++L+ +
Sbjct: 26 CKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNAMVRPAVANIDQVVLVVA 79
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P + L + LV E IP+ L +NK +L+D E ++ +KS GY+ L
Sbjct: 80 AHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSDTEAMVELYKS----IGYDVLMT 135
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S G++ L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 136 STYDMTGIEDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA------ 177
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L FPE
Sbjct: 178 ----FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLPTLFPE 233
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ + C FN C H EP C +K E RY Y + ++I
Sbjct: 234 FSQYVDV-----CKFNPCYHEHEPICGIKDALEAGHIHQGRYDAYMSIRNDI 280
>gi|376005418|ref|ZP_09782923.1| Putative ribosome biogenesis GTPase RsgA 1 (fragment) [Arthrospira
sp. PCC 8005]
gi|375326202|emb|CCE18676.1| Putative ribosome biogenesis GTPase RsgA 1 (fragment) [Arthrospira
sp. PCC 8005]
Length = 185
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 119/212 (56%), Gaps = 28/212 (13%)
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+R +TT I GPSGVGKSSLIN L + H RVGEVS K
Sbjct: 1 MRLKTTAISGPSGVGKSSLINKLIPNSHL----------------------RVGEVSGKL 38
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276
GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPEI++ L KC
Sbjct: 39 GRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPEIRDRLTK---GKCQ 94
Query: 277 FNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQ 336
F++CLH EP CVV+GDWERY Y L+E E ++ E ++ K G +
Sbjct: 95 FDDCLHREEPSCVVRGDWERYPQYLHFLEE--AIEAWETSQHQPLEEDRLKSKSKSGGGK 152
Query: 337 QAEPRLEPKKHRRQSRKRINQSILDELDELDD 368
Q EP+L+ KK+RR SR+ +Q++ ++LD+
Sbjct: 153 QYEPKLQSKKYRRSSRRLEHQNLQQLCEDLDE 184
>gi|442805496|ref|YP_007373645.1| putative ribosome biogenesis GTPase RsgA [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741346|gb|AGC69035.1| putative ribosome biogenesis GTPase RsgA [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 294
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 35/298 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR + +K + GD V D + G IE + +R + PPVANV+ + ++ +
Sbjct: 25 CRVRGVFRKKGITPVAGDFVEFSITDETAKEGWIEEIEERQNFFVRPPVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ + + + L+ AE GI + +NK++L++E+ L K+ GY+ + S
Sbjct: 85 GTSPEPDFLLVDKLLITAERNGITPLIVINKIDLINEQELEEVKNIYVGTGYQVVAISKV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K G D L ++L+ TV G SGVGKS+++N + +D W
Sbjct: 145 GKRGYDELHEKLKGHRTVFAGQSGVGKSTILNNI-----------MDAWV---------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S + RGKHTTRHV LLPL GY+ DTPGF+ +L + L+ +PE
Sbjct: 184 -METGEMS-RIQRGKHTTRHVQLLPLDNDGYVVDTPGFSSLTLEGIEHAKLSSMYPEFIR 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLR 316
+ C F+ C H+ EPGC VK + RY+ Y +L +E++++ E + R
Sbjct: 242 L-----EGMCRFSGCSHIKEPGCAVKDSVQSGEISRVRYECYRRLYEELKLQYENRYR 294
>gi|334134838|ref|ZP_08508340.1| ribosome small subunit-dependent GTPase A-like protein
[Paenibacillus sp. HGF7]
gi|333607682|gb|EGL18994.1| ribosome small subunit-dependent GTPase A-like protein
[Paenibacillus sp. HGF7]
Length = 333
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 154/326 (47%), Gaps = 72/326 (22%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD++ + + + G + + R++E++ PP+ANVD +L+FS
Sbjct: 31 CRARGVFKKRGISPLVGDRIKYEATE--NGEGTVTEIDPRTSEMIRPPIANVDTAMLVFS 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-----------------EEVLNTW 128
+ +P L L +FLV E+TG+ + L K +LVD E V T
Sbjct: 89 VVEPDLNLQLLDKFLVHIENTGLHAAICLTKADLVDLADDSSEKSAAESAEEGEAVQLTA 148
Query: 129 KSR--------LHTW-----------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
S + W GY + S G+D + + L + +V G SG
Sbjct: 149 SSASAGLVAPPMPGWLTDAVELYRKIGYPVMLTSSRQGEGVDQVAEYLDGKISVFAGQSG 208
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSS++NA+ + D + E+S + GRGKHTTRHV L+
Sbjct: 209 VGKSSMLNAIVAGL----------------------DLQTNEISHRLGRGKHTTRHVELI 246
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289
PL+ GGY+ADTPGF+Q +++ + L F E + + C F CLHL EPGC
Sbjct: 247 PLAKGGYVADTPGFSQLDFVELEAEDLGSCFREFQSYAET-----CKFRGCLHLHEPGCK 301
Query: 290 VKGDWE-------RYQYYFQLLDEIR 308
V+ E RY++Y Q L E++
Sbjct: 302 VRDAVEQGEIAASRYEHYLQFLQEMK 327
>gi|390934827|ref|YP_006392332.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570328|gb|AFK86733.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 291
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 46/280 (16%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V V S ++ D G I N+ R +++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDYVDVESQNFKD--GFIVNIHDRKNQLVRPPVSNVDQAIITFSIVNPDLNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
++ E I + +NKV+LVDE+ + N +K GYE + S +G+D L
Sbjct: 98 IILTEVNQINPIICINKVDLVDEDEYMPIYNIYKK----LGYEVIATSKYDNIGIDKLKT 153
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L+ +T+ GPSGVGKSSLIN + E Q +G++S K
Sbjct: 154 ILKGKTSFFTGPSGVGKSSLINCVHGH----------------------ERQEIGDLSEK 191
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTR+V L+ + GGY+ DTPGF + L + +++L + + K A C
Sbjct: 192 LNRGKHTTRNVELISID-GGYVLDTPGFTSLN-LNIDEKNLKNFYKDFKVF-----EANC 244
Query: 276 SFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
FN+CLH+ EP C VK D RY Y L E++
Sbjct: 245 RFNSCLHINEPNCGVKDAVENGLIDKTRYSNYLSLYGELK 284
>gi|374324696|ref|YP_005077825.1| GTPase engC [Paenibacillus terrae HPL-003]
gi|357203705|gb|AET61602.1| GTPase engC [Paenibacillus terrae HPL-003]
Length = 305
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 146/301 (48%), Gaps = 46/301 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM+ + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDRVVYELTE--NGEGMVNEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L DE VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDETVL-AVQEMYRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L + L Q +V G SGVGKSS++NAL EP L
Sbjct: 151 LVTSARTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNAL----------------EPGL 194
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRG+HTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 195 ------TLETSAISNKLGRGRHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLLDEIRI 309
F E + C F C H+ EPGC V+ G ++ Y ++Q L E +
Sbjct: 249 FREFQPYADG-----CKFRGCTHIHEPGCKVREALSEGHISQGRYDNYLQFYQELKEKKR 303
Query: 310 R 310
R
Sbjct: 304 R 304
>gi|258511309|ref|YP_003184743.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478035|gb|ACV58354.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 146/293 (49%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R TE++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTELIRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E+ + GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSPELASATVELYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSVLRARLQGRVTVLAGPSGAGKSTLANAL--APGISF------------------ 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE +
Sbjct: 183 --KTGEVSEKIGRGRQTTRHVELVRLDDATWMADAPGFSQLQ-VPVASREVRLHFPEFRP 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C++ +CLHL E C VK E RY Y QL +E R +E
Sbjct: 240 LAQ-----ECAYRDCLHLDEDNCAVKRAVEEGHVPAPRYMSYRQLYEEAREQE 287
>gi|326389538|ref|ZP_08211105.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus JW 200]
gi|325994543|gb|EGD52968.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus JW 200]
Length = 293
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 143/284 (50%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDRKTFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + K+ L F E E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIAKEDLRYYFKEFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQ 302
+ K C F++CLH+ EP C V+K D RY Y
Sbjct: 242 LQKG-----CKFSSCLHVNEPDCNVIKAVEEGLIDKNRYLSYLS 280
>gi|303228526|ref|ZP_07315354.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-134-V-Col7a]
gi|302516773|gb|EFL58687.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-134-V-Col7a]
Length = 287
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 144/301 (47%), Gaps = 41/301 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKCDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEF 313
L FPE + ++A C FN C H EP C +K ++ + D IR++
Sbjct: 226 RLPTLFPEFSDYVEA-----CKFNPCYHEHEPICGIKEALANHKIFESRYDAYTNIRKDI 280
Query: 314 Q 314
Q
Sbjct: 281 Q 281
>gi|333897216|ref|YP_004471090.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112481|gb|AEF17418.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 291
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 46/280 (16%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V V S + D G I N+ R +++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDYVDVESQNLKD--GFIVNIHDRKNQLVRPPVSNVDQAIITFSIVSPDLNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
++ E I + +NKV+LV+E+ + NT+K GYE + S +G+D L
Sbjct: 98 IILTEVNEINPIICINKVDLVNEDEYMPIYNTYKK----LGYEVITTSKYDNIGIDKLKT 153
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L+ +T+ GPSGVGKSSLIN + E Q +G++S K
Sbjct: 154 ILKGKTSFFTGPSGVGKSSLINCIHGH----------------------ERQEIGDLSEK 191
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTR+V L+P+ GGY+ DTPGF + L + +++L + + + + ++C
Sbjct: 192 LNRGKHTTRNVELIPID-GGYVLDTPGFTSLN-LDIDEKNLKRFYKDFQVF-----ESEC 244
Query: 276 SFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
FN+CLH+ EP C VK D RY Y L +E++
Sbjct: 245 RFNSCLHINEPDCGVKSAIANGLIDRTRYANYISLYNELK 284
>gi|452992529|emb|CCQ96062.1| putative ribosome biogenesis GTPase RsgA [Clostridium ultunense
Esp]
Length = 292
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 36/296 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ K L+GD V++ I D G IE + +R ++++ PPVANV +++ S
Sbjct: 25 CRARGVFREDKITPLIGDNVLI-RISEEDNTGYIEKIMERKSQLMRPPVANVTQAIIVMS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + + L RF+V AE + + + +NK++L E+ + Y + S +
Sbjct: 84 IKKPDINYWLLDRFIVMAEHQNLNIGICINKIDLSLEDEIQQIDKIYGKTEYPIVKTSTK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
S G++ L + L+ TV GPSGVGKSSL+N + P L
Sbjct: 144 SGEGIEDLKKILKKNVTVFAGPSGVGKSSLLNRMH----------------PGL------ 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFPEIK 264
+ ++G+VS K+ RGKHTTRHV L+ + ++ DTPGF+ +L + +++ L + F EI
Sbjct: 182 ELKIGDVSKKTTRGKHTTRHVELIDMDSQSFVLDTPGFSSLNLDFIESEEDLGRYFREI- 240
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEF 313
+ KC F NCLH EP C VK ERY+ Y Q L EI+ F
Sbjct: 241 ----FDYSHKCKFINCLHHKEPNCEVKRQVEKGSISKERYENYLQFLGEIKNTRRF 292
>gi|345017805|ref|YP_004820158.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033148|gb|AEM78874.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 293
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 143/284 (50%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDREAFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + K+ L F E E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIAKEDLRYYFKEFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQ 302
+ K C F++CLH+ EP C V+K D RY Y
Sbjct: 242 LQKG-----CKFSSCLHVNEPDCNVIKAVEEGLIDKNRYLSYLS 280
>gi|331269679|ref|YP_004396171.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
BKT015925]
gi|329126229|gb|AEB76174.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
BKT015925]
Length = 290
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 148/289 (51%), Gaps = 37/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +VGD+V++ + + D G IE + +R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRKKGLTPMVGDRVIITTNN--DNYGAIEEICERDNYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P++ L +FL++ ES I + NK++L ++ + ++ GYE LF +
Sbjct: 82 LKNPEINLDLLNKFLLQCESKNIKAIVCFNKLDLCEDYKNHEAVKMINESGYECLFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD L ++L+ V GPSGVGKS+++N L +G E
Sbjct: 142 EEQGLDELKEKLQGNINVFCGPSGVGKSTILNKL-------------------VGRDIME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S + RGKHTTRH L+ ++ G++ DTPGF+ + TK+ L + FPE E
Sbjct: 183 ---TGLISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDIKFDTKEELKEYFPEFHE 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+C FN CLH EP C+VK + +RY++Y + L+EI
Sbjct: 239 Y-----ENQCKFNGCLHHKEPKCMVKEAVEENKINLKRYEFYTKTLEEI 282
>gi|303232206|ref|ZP_07318909.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-049-V-Sch6]
gi|302513312|gb|EFL55351.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-049-V-Sch6]
Length = 287
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 144/301 (47%), Gaps = 41/301 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKYDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIREEF 313
L FPE + ++A C FN C H EP C +K ++ + D IR++
Sbjct: 226 RLPTLFPEFSDYVEA-----CKFNPCYHEHEPICGIKEALANHKIFESRYDAYTSIRKDI 280
Query: 314 Q 314
Q
Sbjct: 281 Q 281
>gi|291522858|emb|CBK81151.1| ribosome small subunit-dependent GTPase A [Coprococcus catus GD/7]
Length = 292
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 137/289 (47%), Gaps = 34/289 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + S+D D +G I + R ++ P ANVD +++F+
Sbjct: 25 CKAKGIFRNRKIKPLVGDDVFLDSLDENDMKGNITEILPRRNALIRPASANVDQAMIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
QP L RFL+ E +P + NK EL+ E L+ S G + L SV+
Sbjct: 85 AAQPAPNLGLLDRFLLMMERQELPTIICFNKQELISGEELDRLCSIYRGSGCKVLTVSVK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD + + L +TTV+ GPSGVGKSS+ NA+ P A A
Sbjct: 145 QQEGLDQIREILDGRTTVMAGPSGVGKSSMTNAM--YPDAEMA----------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RG+HTTRH L + YL DTPGF+ L K+ L +PE +
Sbjct: 186 ---TGAVSEKIKRGRHTTRHSELFSIGNDTYLMDTPGFSTLYLEGWEKEDLKYYYPEFEA 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+ C FN C HL EP C VK ERY+ Y +E+
Sbjct: 243 YFE-----HCRFNGCNHLSEPDCAVKEAVAAGEISSERYENYKLFYEEL 286
>gi|154505947|ref|ZP_02042685.1| hypothetical protein RUMGNA_03489 [Ruminococcus gnavus ATCC 29149]
gi|153793965|gb|EDN76385.1| ribosome small subunit-dependent GTPase A [Ruminococcus gnavus ATCC
29149]
Length = 292
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVRIEILDEENKTGNIVEIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ L NK ++ + ++ GY +F S
Sbjct: 85 VTKPTPHFNLLDRFLVMMERKEIPVVLCFNKKDIATSPEIAELEAIYEKCGYPIVFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + L +TT I GPSGVGKSSLIN L++
Sbjct: 145 EQENIEEIRRLLLKKTTAIAGPSGVGKSSLINLLQNQVQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L F E
Sbjct: 184 -METGTISRKIERGKHTTRHSELIAVDADSYIMDTPGFSSLYVNDFEKEELKYYFREF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A+ +C F C H+ EPGC VK E RY+ Y ++ E++ ++ +
Sbjct: 241 ---ASYEGQCRFQGCDHVHEPGCAVKEALEEGKIHPIRYKNYLEMYTELKEKKRY 292
>gi|336432650|ref|ZP_08612481.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017932|gb|EGN47685.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_58FAA]
Length = 292
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVRIEILDEENKTGNIVEIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ L NK ++ + ++ GY +F S
Sbjct: 85 VTKPTPHFNLLDRFLVMMERKEIPVVLCFNKKDIATSPEIAELEAIYEKCGYPIVFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + L +TT I GPSGVGKSSLIN L++
Sbjct: 145 EQENIEEIRRLLLKKTTAIAGPSGVGKSSLINLLQNQVQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L F E
Sbjct: 184 -METGTISRKIERGKHTTRHSELIAVDADSYIMDTPGFSSLYVNDFEKEELKYYFREF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A+ +C F C H+ EPGC VK E RY+ Y ++ E++ ++ +
Sbjct: 241 ---ASYEGQCRFQGCDHVHEPGCAVKEALEEGKIHPVRYKNYLEMYTELKEKKRY 292
>gi|312111722|ref|YP_003990038.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. Y4.1MC1]
gi|311216823|gb|ADP75427.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. Y4.1MC1]
Length = 293
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 151/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATG--EAEGYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ +KLG++ LL L +V G SGVGKSSL+NAL D+
Sbjct: 143 SIVTKLGVERLLSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+E A C F CLH+ EP C V+ E RY+ Y ++E++ R+
Sbjct: 240 FRERSDA-----CKFRGCLHISEPKCAVREAVEAGEIPSYRYENYISFVEEMKERK 290
>gi|150016036|ref|YP_001308290.1| ribosome-associated GTPase [Clostridium beijerinckii NCIMB 8052]
gi|254766358|sp|A6LSK4.1|RSGA_CLOB8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|149902501|gb|ABR33334.1| ribosome small subunit-dependent GTPase A [Clostridium beijerinckii
NCIMB 8052]
Length = 290
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 39/287 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I +G+IE + +R +E++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDDV---TIKMEHGKGVIEEIHERKSELVRPTVANVSLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLILCEYNNIEVIVCLNKIDLVSEEEREEIKKRINVIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L +++R TV GPSG GKS+LIN L + H
Sbjct: 141 KGIGIERLEEKIRGNITVFCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEIK 264
G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGNVSVKLGRGKHTTRHSELIEVA-DGYIVDTPGFSTLEIKDLMDKNSLKYCFPEFT 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
+ KC + CLH EP C +K E RY++Y + L
Sbjct: 238 QY-----NDKCKYRGCLHYKEPNCALKEAVESEKINRYRYEFYVRAL 279
>gi|153954001|ref|YP_001394766.1| ribosome-associated GTPase [Clostridium kluyveri DSM 555]
gi|219854615|ref|YP_002471737.1| hypothetical protein CKR_1272 [Clostridium kluyveri NBRC 12016]
gi|254766367|sp|B9E1E8.1|RSGA_CLOK1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766368|sp|A5N7Y7.1|RSGA_CLOK5 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|146346882|gb|EDK33418.1| Predicted GTPase [Clostridium kluyveri DSM 555]
gi|219568339|dbj|BAH06323.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 287
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 38/281 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I +G+I+ + R +++ P VANV L++F+ + P++ L +F
Sbjct: 38 MVGDKV---EIKLERDQGIIDEICPRISQLKRPAVANVTQALVVFAFNHPEINEDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E + + NK++L D+E + GYE +F + G+D + ++L+D
Sbjct: 95 LISCEFNNLKPIVCFNKLDLADKEKKLDVIDMIRNTGYEVIFLKAKEGYGIDKVREKLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+++NA I G + E G++S K RG
Sbjct: 155 NITVLCGPSGVGKSTILNA-------------------IYGKELME---TGQISHKLNRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
KHTTRH ++ L G++ DTPGF+ + +TK L FPE E + C F
Sbjct: 193 KHTTRHSEIIELE-DGFMVDTPGFSSLDIGHITKDKLQYCFPEFIEFI-----GICKFTG 246
Query: 280 CLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C+H EP C VK + RY +Y + L+EI ++++
Sbjct: 247 CVHHKEPDCAVKSALYDDKINKRRYDFYVKTLNEISSKKKY 287
>gi|365157098|ref|ZP_09353379.1| ribosome small subunit-dependent GTPase A [Bacillus smithii
7_3_47FAA]
gi|363625832|gb|EHL76843.1| ribosome small subunit-dependent GTPase A [Bacillus smithii
7_3_47FAA]
Length = 293
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 152/296 (51%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V ++ G I ++ +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKQKISPLVGDYVEYQL--ESNQEGYILSIEKRKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES I + L K++L+ DE+ ++++ GY+ +
Sbjct: 83 VARPNFHLGLLDRFLVLIESKAITPIICLTKMDLLSPEDEQKIHSYCEDYREIGYQVITT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV++ GLD + L+++T+V G SGVGKSSL+NALR D E
Sbjct: 143 SVKNGSGLDQIRAVLQEKTSVFAGQSGVGKSSLLNALRP----------DLQLE------ 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S GRGKHTTRHV L+ + G +ADTPGF+ L + L+ FPE
Sbjct: 187 ------TKDISDSLGRGKHTTRHVELIEID-NGLVADTPGFSSLELGDLDLDELSSCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I ++ + C F C HL EP C V+ E RY +Y Q L EI+ R+
Sbjct: 240 IHQLSQY-----CKFRGCRHLNEPKCAVREAVEMKKIPAYRYDHYQQFLVEIKERK 290
>gi|295696046|ref|YP_003589284.1| ribosome small subunit-dependent GTPase A [Kyrpidia tusciae DSM
2912]
gi|295411648|gb|ADG06140.1| ribosome small subunit-dependent GTPase A [Kyrpidia tusciae DSM
2912]
Length = 298
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 155/305 (50%), Gaps = 39/305 (12%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G + C R +LKK +VGD+V V + G++E+V R+ ++ PPVANV
Sbjct: 20 DLKGRTVRCRARGVLKKRGMHPVVGDEVRVHLSGLSE--GVVEDVLARTNILVRPPVANV 77
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWG 136
D +L+FS+ +P L L R LV E +P L +K +L+ D S G
Sbjct: 78 DLAVLVFSIREPDLNRHLLDRLLVSVELQNVPALLCWSKADLLQDRADFEREVSVYGRLG 137
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y L+ S + G+D+L RLR + +V+ G SGVGKSSLINAL
Sbjct: 138 YPTLYASSLTGEGIDALRTRLRGKVSVLAGQSGVGKSSLINAL----------------H 181
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQS 255
P L ++ VG+VS + GRG+HTTR V LL L Y+ADTPGF + K + +
Sbjct: 182 PGL------NRAVGDVSRRLGRGRHTTRQVELLRLEENTYVADTPGFGVLAFDKDLEPEK 235
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
L++ FPE+ E+ + C + CLH E GC V D RY +Y + L E+R
Sbjct: 236 LSKGFPELVEVGR-----NCRYRGCLHEEEEGCAVPAALAEGRIDPLRYDHYREWLKELR 290
Query: 309 -IREE 312
REE
Sbjct: 291 EAREE 295
>gi|374296867|ref|YP_005047058.1| ribosome small subunit-dependent GTPase A [Clostridium clariflavum
DSM 19732]
gi|359826361|gb|AEV69134.1| ribosome small subunit-dependent GTPase A [Clostridium clariflavum
DSM 19732]
Length = 295
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 141/291 (48%), Gaps = 37/291 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GDKV + I+ ++ G IE +F R ++++ P VANV+ + ++ +
Sbjct: 25 CKARGIFRKDSLTPLPGDKVSISIINEENKTGSIEEIFPRESQLIRPAVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ + L + L+ E GI + +NK++L ++ + Y+ + S
Sbjct: 85 VKSPQPDFTLLDKLLISTEQKGIGAIICINKIDLDEKAEYTSIIQAYEKSMYKVIALSAV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G D + LRD+TTV G SGVGKSS++N + +S
Sbjct: 145 TGTGFDEIELALRDKTTVFAGQSGVGKSSILNKILNS----------------------Y 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G VS + RG+HTTRH L+ L GG++ DTPGF+ + + L +PE +E
Sbjct: 183 VMKTGSVSDRIERGRHTTRHAELIELKSGGFVVDTPGFSSFEISGIEADELQNFYPEFRE 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLLDE 306
+ KC F C+H+ EP C VK G + RY ++ +L E
Sbjct: 243 YI-----GKCKFTGCVHISEPYCEVKAALEKRVIDNGRYRRYVEFYNILRE 288
>gi|20807942|ref|NP_623113.1| GTPase [Thermoanaerobacter tengcongensis MB4]
gi|38257677|sp|Q8R9T7.1|RSGA_THETN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|20516512|gb|AAM24717.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
Length = 295
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 146/294 (49%), Gaps = 37/294 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V ++ ++ G I + R +++ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNIIPLVGDIAEVQLVN--EKEGYILEILPRKNQLVRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AE I + +NKV++ E + + GY+ + S
Sbjct: 85 ISKPEINRVLLDKMIVVAEINKIEPVVCINKVDMEKREEVENLINVYRKIGYKAVGTSAV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ L L+D+ + GPSGVGKSSLIN ++S+
Sbjct: 145 TGEGMEELKSYLKDKISFFAGPSGVGKSSLINLIQSNIRL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GE+S K GRG+HTTR V LPL GGY+ DTPGF + + K+ L F E E
Sbjct: 185 --KTGELSEKLGRGRHTTRSVEFLPLDFGGYVLDTPGFTALE-IDIPKEELRNYFREFIE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312
+ C FN+CLH+ EP C V D +RY Y LL E++ +E+
Sbjct: 242 FQE-----NCRFNSCLHVNEPDCAVTEAVDEGIIDRQRYISYLTLLREVKEKEK 290
>gi|218290482|ref|ZP_03494602.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius LAA1]
gi|218239503|gb|EED06698.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius LAA1]
Length = 291
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 145/293 (49%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R TE+L PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTELLRPPIANVDHVVIACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E + GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSLERASATVDMYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSLLRARLQGRVTVLAGPSGAGKSTLANAL--APGIS------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE +
Sbjct: 182 -FKTGEVSEKIGRGRQTTRHVELVRLDDATWMADAPGFSQLQ-VPVASRDVRLHFPEFRP 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C++ +CLHL E C VK E RY Y QL +E R +E
Sbjct: 240 VAE-----ECAYRDCLHLDEDNCAVKRAVEEGRVPATRYMSYKQLYEEAREQE 287
>gi|167040385|ref|YP_001663370.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X514]
gi|256752277|ref|ZP_05493140.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914469|ref|ZP_07131785.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X561]
gi|307724295|ref|YP_003904046.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X513]
gi|166854625|gb|ABY93034.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X514]
gi|256748845|gb|EEU61886.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889404|gb|EFK84550.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X561]
gi|307581356|gb|ADN54755.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X513]
Length = 293
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E++ PP+ANVD +++F+
Sbjct: 27 CRARGKFRKDNVTPLVGDIVEIQMIN--DSEGYILNILPRKNELIRPPIANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AES I + +NKV+L ++ + GY+ + SV
Sbjct: 85 IAKPEINRVLLDKMIVLAESNDIEPIICINKVDLKEDREAFDLVTIYQKIGYKAVTTSVV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKDGIKELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDNQDLRYYFREFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQ 302
+ + C F++CLH+ EP C ++K D RY Y
Sbjct: 242 LQRG-----CKFSSCLHVNEPDCNIIKAVKEGLIDKNRYLSYLS 280
>gi|423720637|ref|ZP_17694819.1| ribosome biogenesis GTPase rsgA [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365990|gb|EID43281.1| ribosome biogenesis GTPase rsgA [Geobacillus thermoglucosidans
TNO-09.020]
Length = 293
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 150/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATG--EAEGYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ LL L +V G SGVGKSSL+NAL D+
Sbjct: 143 STVTKLGVERLLSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+E A C F CLH+ EP C V+ E RY+ Y ++E++ R+
Sbjct: 240 FRERSDA-----CKFRGCLHISEPKCAVREAVEAGEIPSYRYENYISFVEEMKERK 290
>gi|410658810|ref|YP_006911181.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp.
DCA]
gi|410661796|ref|YP_006914167.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp. CF]
gi|409021165|gb|AFV03196.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp.
DCA]
gi|409024152|gb|AFV06182.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp. CF]
Length = 289
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 147/290 (50%), Gaps = 41/290 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + K+ + GDKV+V + + IE V +R ++ P +ANVD +LL+FS
Sbjct: 26 CSLRGRFRVKKQEFIPGDKVMV--LPGTGDKATIEKVLERQNSLVRPYIANVDQVLLVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS-RLHTWGYEPLFCSV 144
+ P + L R L++A GI + + K +L +V N S GYE + S
Sbjct: 84 LKTPDPDYNLLDRLLIQAGEAGISILIVFTKEDL---DVGNKTPSVDYRRIGYEVVQVSN 140
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+D + +RL+ +V+ GPSG GKSSLINAL
Sbjct: 141 RTLTGIDEIAERLKGNVSVLAGPSGSGKSSLINALNPG---------------------- 178
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ + G VS K GRG+HTTRHV LL ++ GG +ADTPGF+ L ++ ++ L FPE
Sbjct: 179 KTLKTGNVSDKIGRGRHTTRHVELLSVA-GGLVADTPGFSSLYLPEMKREELQSYFPEFV 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+ +C F++CLH EP C VK + RY++Y Q L E+
Sbjct: 238 RI-----KHECRFSSCLHDKEPDCAVKEALSESLINSSRYEHYLQFLKEV 282
>gi|363891049|ref|ZP_09318332.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM5]
gi|361962016|gb|EHL15165.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM5]
Length = 305
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 35/288 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +E+ GY+ + S +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEEKNYKNIIKIYQDIGYQTVEISSNDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E K+
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLEFKKF-- 252
Query: 269 ANEPAKCSF-NNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIR 308
C F + CLH EP C VK GD + RY Y ++LD+I+
Sbjct: 253 ---EDDCKFASKCLHEHEPYCGVKNAVKNGDIQKSRYDSYLKILDDIK 297
>gi|404329179|ref|ZP_10969627.1| GTPase RsgA [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 294
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 150/301 (49%), Gaps = 40/301 (13%)
Query: 19 KTG-VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
KTG ++ C R + +K LVGD VV + + D G I ++ R + PP+AN+
Sbjct: 17 KTGDRQIQCRARGIFRKRGVTPLVGDHVVYEAENPSD--GYIMSIRPRKNFLSRPPIANI 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-- 135
D LL+FS+ +P+ + L RFL+ E++ I + L K +L+ E+ + K +L +
Sbjct: 75 DQALLVFSVSEPEFDSQLLDRFLIIMEASRIHSVICLTKEDLLSEDQESLLKKQLSVYRH 134
Query: 136 -GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S ++ G+D L Q L + TV+ G SGVGKSSL+N + ++ +
Sbjct: 135 AGYPVIVTSSKAHTGIDELRQILDGKVTVVTGQSGVGKSSLLNQINTTLN---------- 184
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
E Q +S GRGKHTTRHV+LL + G++ADTPGF+ + ++
Sbjct: 185 ---------IETQ---SISHALGRGKHTTRHVALLQIGRSGFVADTPGFSSLDVTQIDAS 232
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
LA FPE C F C H+ EP C VK D +RY +Y EI
Sbjct: 233 ELAGCFPEFSPF-----SPSCRFRTCTHIAEPDCAVKHAVETGDIDPKRYDHYCFFYHEI 287
Query: 308 R 308
+
Sbjct: 288 K 288
>gi|328957302|ref|YP_004374688.1| ribosome-associated GTPase [Carnobacterium sp. 17-4]
gi|328673626|gb|AEB29672.1| ribosome-associated GTPase [Carnobacterium sp. 17-4]
Length = 300
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 154/295 (52%), Gaps = 43/295 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K + LVGD V+ S + + G+++ + R E++ PPVANVD +++ S +
Sbjct: 28 RGNFRKRELTPLVGDYVLFESGNL--KEGVVQELLPRKNELVRPPVANVDIGIVVMSAIE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P L RFLV ES GI + ++K++L+ +E+L K + + GY P+ +
Sbjct: 86 PNFSTNLLDRFLVTLESKGIQAIIYISKIDLLTDELLQQLKEKERAYEKIGY-PIIVPEQ 144
Query: 146 --SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+K L+ L ++ +V +G SG GKS+L+N++ A D+
Sbjct: 145 DDNKKSLEELTSYFPNKLSVFMGQSGAGKSTLLNSI--------APDL------------ 184
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ + E+S+ GRGKHTTRHV LLPL G +ADTPGF+ L++ + L+ FP+
Sbjct: 185 --ELKTAEISSSLGRGKHTTRHVELLPLY-EGLVADTPGFSSIDFLELEAEELSACFPDF 241
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E+ C F C+H EPGC VK + E RYQ+Y Q LDEI R+
Sbjct: 242 VEV-----QDDCRFRGCMHKKEPGCQVKKEVELNMIPAYRYQHYLQFLDEIESRK 291
>gi|363895556|ref|ZP_09322551.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
ACC19a]
gi|361957308|gb|EHL10618.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
ACC19a]
Length = 305
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 35/288 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +E+ GY+ + S + +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEEKNYKNIIKIYQDIGYQTVEISSNNNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E K+
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLEFKKF-- 252
Query: 269 ANEPAKCSF-NNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIR 308
C F + C+H EP C VK GD + RY Y ++LD+I+
Sbjct: 253 ---EDDCKFASKCIHEHEPYCGVKNAVQNGDIQKSRYDSYLKILDDIK 297
>gi|374708690|ref|ZP_09713124.1| GTPase RsgA [Sporolactobacillus inulinus CASD]
Length = 296
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 39/299 (13%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
++ C R + +K K LVGD V + D G I ++ R + PP+AN+D +L
Sbjct: 22 DIQCRARGIFRKRKVSPLVGDHVTYEAKKPSD--GYILSIQARKNALKRPPIANIDQAIL 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEP 139
+FS+++P + L RFLV E+ I + K +L+ L+ +K++++ + GY
Sbjct: 80 VFSVEEPSFDCQLLDRFLVTMEAHAIHSLICFTKKDLLTANDLSKFKTQINIYERIGYPV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
F S + G+ L +++ + +V+ G SGVGKS+L+N L SS
Sbjct: 140 FFISSVTNEGISELKKQMAHRISVVTGQSGVGKSTLLNHLNSS----------------- 182
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
E Q +S GRGKHTTRH L+P+ GY+ADTPGF+ + ++ L
Sbjct: 183 --LSIETQ---SISQALGRGKHTTRHTELIPIVEDGYIADTPGFSALEIPEIVSVDLENC 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
FPE C F C HL EP C VK D +RY +Y E++ RE
Sbjct: 238 FPEFSAYRDG-----CRFRGCTHLAEPNCRVKEAVSAGEIDQKRYAHYSLFFQELKERE 291
>gi|220928959|ref|YP_002505868.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulolyticum H10]
gi|254766366|sp|B8I262.1|RSGA_CLOCE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|219999287|gb|ACL75888.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulolyticum H10]
Length = 305
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 35/290 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G I+ + RS+E++ P VANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDGDKKLGNIDEILPRSSELVRPAVANVDQIAIIVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ AE+ I + + +NK++L D++ ++ GY+ + S
Sbjct: 87 AKAPNPDYMLLDKLLITAETRNIRVLICVNKIDL-DDDTAKIVRNAYSPAGYDVIEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L+ TV G SGVGKS+++N + +++W
Sbjct: 146 RNIGYKRLKEELKGHITVFAGQSGVGKSTILNHI-----------MESWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RGKHTTRH LL L GGY+ADTPGF+ ++ + L + +PE
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEIIDIPYNQLERYYPEFLP 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIR 308
+ C FN+C H+ EPGC V + D RYQ Y QL ++
Sbjct: 244 YINT-----CRFNSCSHITEPGCRVIEALERSEIDNNRYQRYIQLYKALK 288
>gi|255525644|ref|ZP_05392577.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
gi|255510630|gb|EET86937.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
Length = 220
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 35/245 (14%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
+ANV L++F++ P++ L +FL+ E + + NK++LV +E +N +
Sbjct: 1 MANVTQALVVFALRNPEINEELLNKFLLSCEYNNLKAIVCFNKLDLVLQEEMNEIVEMVK 60
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
+ GYE LF + G+D + ++L+D TV+ GPSGVGKS+++N+
Sbjct: 61 SAGYETLFLKAKEGYGIDLIREKLQDNVTVLCGPSGVGKSTILNS--------------- 105
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
I+G E GE+S K RGKHTTRH L+ + G G+L DTPGF+ + ++K
Sbjct: 106 ----IMGE---EVMATGEISEKLRRGKHTTRHSELIDI-GNGFLVDTPGFSSLEIEFISK 157
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ L Q FPE + C F C H EPGC VK E RY++Y + L+E
Sbjct: 158 EDLQQCFPEFDSYI-----GNCKFTGCFHYKEPGCAVKHAVEQKKINAKRYEFYIKTLEE 212
Query: 307 IRIRE 311
I R+
Sbjct: 213 INNRK 217
>gi|167037724|ref|YP_001665302.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116139|ref|YP_004186298.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856558|gb|ABY94966.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929230|gb|ADV79915.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 293
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E++ PP+ANVD +++F+
Sbjct: 27 CRARGKFRKDNVTPLVGDIVEIQMIN--DSEGYILNILPRKNELIRPPIANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AES I + +NKV+L ++ + GY+ + SV
Sbjct: 85 IAKPEINRVLLDKMIVLAESNDIEPIICINKVDLKEDREAFDLVTIYQKIGYKAVTTSVV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKDGIKELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDIQDLRYYFREFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQ 302
+ + C F++CLH+ EP C ++K D RY Y
Sbjct: 242 LQRG-----CKFSSCLHVNEPDCNIIKAVKEGLIDKNRYLSYLS 280
>gi|392940851|ref|ZP_10306495.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
siderophilus SR4]
gi|392292601|gb|EIW01045.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
siderophilus SR4]
Length = 293
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 142/284 (50%), Gaps = 37/284 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDRKTFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDNQDLRYYFREFLE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG------DWERYQYYFQ 302
+ + C F++CLH+ EP C ++K D RY Y
Sbjct: 242 LQRG-----CKFSSCLHVNEPDCNIIKAVKEGLIDKNRYLSYLS 280
>gi|332981569|ref|YP_004463010.1| ribosome small subunit-dependent GTPase A [Mahella australiensis
50-1 BON]
gi|332699247|gb|AEE96188.1| ribosome small subunit-dependent GTPase A [Mahella australiensis
50-1 BON]
Length = 294
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 153/297 (51%), Gaps = 40/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K+ +VGD+V + +D D G+I+ + R + PPVANVD ++ + +
Sbjct: 26 CKARGKFRKLHIIPMVGDRVRIRVLD--DGTGIIDEIMPRRNALTRPPVANVDQMIAVIA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSV 144
+ QP+ L + ++ AE + + + +NK++L D V S+ + GY ++ SV
Sbjct: 84 VAQPEPNLLQLDKLILAAEKQQLDIVICINKIDLDDGMVQCKAISKAYEMAGYNVVYTSV 143
Query: 145 ESKL-GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
L G++ + + LR + TVI G SGVGKSS+INA+ +
Sbjct: 144 AEPLCGIEDVKRFLRGRITVIAGQSGVGKSSIINAICGQNRMA----------------- 186
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
VGE+S K+G GKHTTRHV LL + GG +ADTPGF+ L++TK +A + E
Sbjct: 187 -----VGEISAKAGLGKHTTRHVELLAVD-GGMIADTPGFSAFE-LRLTKYEVAAFYREF 239
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A+C F++CLHL EP C V+ E RY+ Y + DE+ + F
Sbjct: 240 SLY-----AAECYFSDCLHLKEPNCAVRQAVEQGLIDRGRYERYVYIQDELEQEKGF 291
>gi|336236096|ref|YP_004588712.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoglucosidasius
C56-YS93]
gi|335362951|gb|AEH48631.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 293
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 149/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATG--EAEGYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ L L +V G SGVGKSSL+NAL D+
Sbjct: 143 STVTKLGVERLFSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+E A C F CLH+ EP C V+ E RY+ Y ++E++ R+
Sbjct: 240 FRERSDA-----CKFRGCLHISEPKCAVREAVEAGEIPSYRYENYISFVEEMKERK 290
>gi|160893334|ref|ZP_02074121.1| hypothetical protein CLOL250_00883 [Clostridium sp. L2-50]
gi|156865026|gb|EDO58457.1| ribosome small subunit-dependent GTPase A [Clostridium sp. L2-50]
Length = 292
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 144/303 (47%), Gaps = 46/303 (15%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GV C + + + K + LVGD V + +D G IE++ R + P VANVD
Sbjct: 18 ENGVTYECKAKGVFRNRKIKPLVGDNVEIEILDAEKNLGNIEDILPRFNWLNRPAVANVD 77
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL----VDEEVLNTWKSRLHT 134
+++F++ P L RFL+ E +P + NK++L E++ ++
Sbjct: 78 QTVIIFAVSAPAPNFNLLDRFLINMEQHEVPTIICFNKIDLEGFRQSEDICRSYTKS--- 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GYE LF S ES G+ +L ++ +TTV GPSGVGKSS +N+L
Sbjct: 135 -GYEVLFISAESGYGIHTLEAVIKGKTTVFAGPSGVGKSSTLNSL--------------- 178
Query: 195 FEPILGSKWFEDQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
F D V G +S K RGKHTTRH L+ + Y+ DTPGF+ +
Sbjct: 179 ---------FPDANVQTGGLSEKIQRGKHTTRHSELMFVDDDTYIMDTPGFSSLYTEGIE 229
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK---GDWE----RYQYYFQLLD 305
+ L FPEI A C FN C H+ EPGC+VK GD RY Y + +
Sbjct: 230 AEDLKLYFPEI-----AAYTGTCKFNMCNHISEPGCLVKEAVGDGRISKMRYDDYVMIYN 284
Query: 306 EIR 308
E++
Sbjct: 285 ELK 287
>gi|357053209|ref|ZP_09114309.1| ribosome small subunit-dependent GTPase A [Clostridium
clostridioforme 2_1_49FAA]
gi|355385976|gb|EHG33020.1| ribosome small subunit-dependent GTPase A [Clostridium
clostridioforme 2_1_49FAA]
Length = 292
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D ++ G I+ + RS ++ P VANVD L++F+
Sbjct: 25 CKAKGVFRSRKIKPLVGDNVEFSVLDEEEKEGNIDAILPRSNVLIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV G+P+T+ NKV+L + +++ +++ GYE F S
Sbjct: 85 ITHPEPNLNLLDRFLVMMGIQGVPVTICFNKVDLGEAGLVDKYRAIYERAGYEVHFVSTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GL+ + + LR +T+V+ GPSGVGKSSL N R P AS
Sbjct: 145 DDTGLEEMRKFLRGKTSVLAGPSGVGKSSLTN--RIQPQAS------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G++S K RG+HTTRH L+ + Y+ DTPGF+ + + L FPE
Sbjct: 184 -METGDISRKIERGRHTTRHSELIYVEEETYMMDTPGFSSMFIDFLEPGELKHYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQY--YFQLLDEIRIREEF 313
+C F C+H+GE C VK G+ R +Y Y + +E++ + +
Sbjct: 241 ---GPYEDECKFLGCVHVGERVCGVKEALKRGELSRGRYDNYILMYEELKNKRRY 292
>gi|326203173|ref|ZP_08193039.1| ribosome small subunit-dependent GTPase A [Clostridium
papyrosolvens DSM 2782]
gi|325986819|gb|EGD47649.1| ribosome small subunit-dependent GTPase A [Clostridium
papyrosolvens DSM 2782]
Length = 305
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 140/290 (48%), Gaps = 35/290 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G ++ + R +E++ P +ANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDEAKKLGNVDEILPRMSELVRPAIANVDQIAIVVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ +E I + + +NK++L D+ T ++ GYE + S
Sbjct: 87 AKAPNPDYMLLDKLLITSEMKKIRVIICINKIDL-DDGTAKTIRNAYSLAGYEVVEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L++ TV G SGVGKS+++N + +D+W
Sbjct: 146 RNVGYKLLKEELKEHITVFAGQSGVGKSTILNHI-----------MDSWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RGKHTTRH LL L GGY+ADTPGF+ + + L +PE +
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEITDIPYNELESYYPEFRP 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIR 308
+ C FN+C H+ EPGC + + D RYQ Y QL ++
Sbjct: 244 YINT-----CRFNSCSHITEPGCRIIEALEHSEIDNNRYQRYIQLYKALK 288
>gi|429737554|ref|ZP_19271412.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429152360|gb|EKX95190.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 291
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 147/300 (49%), Gaps = 48/300 (16%)
Query: 24 LLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + + + GD V + I G+IE + R+ + P VAN+ ++
Sbjct: 25 ILCKLRGRVKKGRSELTPVPGDIVSLERIS--SDEGVIERIEARTNLLQRPRVANLTQIV 82
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD---EEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +GI + L +NK++L E+VL +++ GY
Sbjct: 83 VTVAAALPDPHPLVVSRFLVLAERSGIKKIALCVNKMDLCQGTPEDVLAAYEA----AGY 138
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GL L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 139 PVLRVSAEQGTGLRELHERLAGEITVFAGPSGAGKSSLLNAL----------------DP 182
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP + GGY+ DTPGF Q L ++ + L
Sbjct: 183 SLA------LLTGVVSEKIGRGRHTTRRAELLPFA-GGYVVDTPGFTQQELTEIAPEELV 235
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIR 310
FPE A C F C H EP C VK ERY Y LLDE++++
Sbjct: 236 ACFPEFARH------AGCRFAPCSHSHEPSCAVKAAAETGELSPERYDAYIALLDELKLK 289
>gi|163790819|ref|ZP_02185244.1| hypothetical protein CAT7_07168 [Carnobacterium sp. AT7]
gi|159873887|gb|EDP67966.1| hypothetical protein CAT7_07168 [Carnobacterium sp. AT7]
Length = 300
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 45/285 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V+ S + + G+++ + R E++ PPVANVD +++ S +P L RF
Sbjct: 39 LVGDYVLFESGNL--KEGVVQELLPRKNELVRPPVANVDIGVVVMSAIEPNFSTNLLDRF 96
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV------ESKLGLDSL 153
LV ES I + ++K++L+ +E L K + YE + S+ ++K L+ L
Sbjct: 97 LVTLESKRIQAIIYISKIDLLTDETLQQIKEKQRE--YEKIGYSIVVPEQKDNKKSLEEL 154
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
+ D+ TV +G SG GKS+L+N++ A D+ +L + E+S
Sbjct: 155 VSYFPDKLTVFMGQSGAGKSTLLNSI--------APDL------LL--------KTAEIS 192
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
+ GRGKHTTRHV LLPL G +ADTPGF+ L++ + L+ FPE E+
Sbjct: 193 SSLGRGKHTTRHVELLPLY-NGLVADTPGFSSIDFLELEPEELSACFPEFVEV-----QD 246
Query: 274 KCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+C F C+H EPGC VK + E RYQ+Y Q L+EI R+
Sbjct: 247 ECRFRGCMHKKEPGCQVKKEVELNTIPEYRYQHYLQFLNEIESRK 291
>gi|424834137|ref|ZP_18258853.1| GTPase RsgA [Clostridium sporogenes PA 3679]
gi|365978912|gb|EHN14978.1| GTPase RsgA [Clostridium sporogenes PA 3679]
Length = 292
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 144/292 (49%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE ++ R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYDRKSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIIFMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EEKNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K++L PE ++
Sbjct: 182 TMLTGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDISFMEKENLLHCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP CVVK E RY +Y + L+EI R
Sbjct: 241 FI-----GECKFTGCLHYREPNCVVKKAVEEGHINKNRYDFYIKTLEEIMNR 287
>gi|401564492|ref|ZP_10805382.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC6]
gi|400188776|gb|EJO22915.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC6]
Length = 291
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 146/300 (48%), Gaps = 51/300 (17%)
Query: 29 RALLKKIKRRVLVGDK---VVVGSIDWVDR----RGMIENVFQRSTEILDPPVANVDHLL 81
R +L K++ RV G V G I ++R G+IE + R+ + P VAN+ ++
Sbjct: 23 RVILCKLRGRVKKGRSDLTPVPGDIVSLERITAEEGVIERIEARANLLQRPRVANLTQIV 82
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVEL---VDEEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +G+ + L +NK++L E+ L +++ GY
Sbjct: 83 VTVAAVAPDPHPLVVSRFLVLAECSGVKKIVLCVNKMDLYAGAPEDALAPYEA----AGY 138
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GLD L RL + TV GPSG GKSSL+NAL +P
Sbjct: 139 PVLRVSAEQGTGLDELRGRLAGEITVFAGPSGAGKSSLLNAL----------------DP 182
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR L+P + GGY+ DTPGF Q L + + LA
Sbjct: 183 SLA------LLTGAVSEKIGRGRHTTRRAELIPFA-GGYVVDTPGFTQQELTDLAPEELA 235
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIRIR 310
FPE A C F C H EP C VK G+ ERY Y LLDE+R +
Sbjct: 236 ACFPEFARH------ASCRFAPCSHSHEPACAVKEAAETGELPRERYDAYIALLDELRTK 289
>gi|153939662|ref|YP_001391799.1| ribosome-associated GTPase [Clostridium botulinum F str. Langeland]
gi|170754729|ref|YP_001782046.1| ribosome-associated GTPase [Clostridium botulinum B1 str. Okra]
gi|384462808|ref|YP_005675403.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. 230613]
gi|429245938|ref|ZP_19209305.1| GTPase RsgA [Clostridium botulinum CFSAN001628]
gi|254766363|sp|B1IIL4.1|RSGA_CLOBK RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766364|sp|A7GG89.1|RSGA_CLOBL RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|152935558|gb|ABS41056.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. Langeland]
gi|169119941|gb|ACA43777.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum B1
str. Okra]
gi|295319825|gb|ADG00203.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. 230613]
gi|428757028|gb|EKX79533.1| GTPase RsgA [Clostridium botulinum CFSAN001628]
Length = 292
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 143/292 (48%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + E
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 KERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+E R
Sbjct: 241 FI-----GECKFTGCLHHREPNCAVKKAVEEGHIHKNRYDFYIKTLEEFMNR 287
>gi|153815682|ref|ZP_01968350.1| hypothetical protein RUMTOR_01918 [Ruminococcus torques ATCC 27756]
gi|317501931|ref|ZP_07960115.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088255|ref|ZP_08337174.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336440092|ref|ZP_08619691.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846923|gb|EDK23841.1| ribosome small subunit-dependent GTPase A [Ruminococcus torques
ATCC 27756]
gi|316896611|gb|EFV18698.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330408499|gb|EGG87965.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014441|gb|EGN44290.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 299
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 138/297 (46%), Gaps = 41/297 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD V + +D +++G I + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDGVKPLVGDNVEIEVLDEEEKKGNIREILTRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK ++ E ++ + + GY F S +
Sbjct: 85 VTKPKPHFNLLDRFLVMMEQKKIPVILCFNKSDIAKESDISKMEEIYRSCGYPVFFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + + L +TTV+ GPSGVGKSSLIN L+S
Sbjct: 145 EGWKIEEVKKILHGKTTVLAGPSGVGKSSLINLLQSEVM--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLS-------GGGYLADTPGFNQPSLLKVTKQSLAQ 258
G +S K RGKHTTRH LL L G Y+ DTPGF+ + K+ L
Sbjct: 184 -METGSISRKIDRGKHTTRHSELLVLEEDEKVEDCGSYIVDTPGFSSLYVNDFEKEQLKY 242
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
FPE C F+ C H+ EP C VK E RY Y + E++
Sbjct: 243 YFPEF-----GPYEGLCRFSGCDHVHEPDCAVKQAAEEGKIHEIRYNDYVAMYRELQ 294
>gi|168182580|ref|ZP_02617244.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Bf]
gi|237795942|ref|YP_002863494.1| ribosome-associated GTPase [Clostridium botulinum Ba4 str. 657]
gi|259495471|sp|C3L0K4.1|RSGA_CLOB6 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|182674188|gb|EDT86149.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Bf]
gi|229263105|gb|ACQ54138.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Ba4 str. 657]
Length = 292
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 145/292 (49%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKVIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLYCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+EI R
Sbjct: 241 FI-----GECKFTGCLHHREPNCAVKKAVEEGHIHKNRYDFYIKTLEEIMNR 287
>gi|289422329|ref|ZP_06424179.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius 653-L]
gi|289157274|gb|EFD05889.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius 653-L]
Length = 297
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 149/298 (50%), Gaps = 37/298 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV+ +D ++G+I+ + R + ++ PP+AN+D +L+ FS
Sbjct: 25 CKARGIFRKKNMAPLVGDRVVLSILDEEGKKGIIDEILPRKSYLVRPPIANIDKVLITFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSV 144
+ +P L RF++ AE + + + L K +L ++ ++ N K + GY +
Sbjct: 85 VKEPVPNLSLLDRFIILAEREELEIVILLTKTDLDEDRLISNQIKEEFESIGYPVIDVCA 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +D +++ + +V G SGVGKSS++NA +D F
Sbjct: 145 RTGENIDRVIEEMEGCVSVFAGQSGVGKSSILNA------------IDPEF--------- 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ + E+S K GRGKHTTRH L + +ADTPGF+ + ++ + L + F E
Sbjct: 184 -NLKTAEISQKLGRGKHTTRHAELYKIGKNAVVADTPGFSSFDVNELDPEELREYFVEFG 242
Query: 265 EMLKANEPAKCSFNN-CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQ 314
E + C F N C+H EP C VK E RY+ Y QLLDEI +F+
Sbjct: 243 EY------SDCRFGNKCIHKNEPDCGVKEAVENGHISKRRYESYLQLLDEINNNGKFR 294
>gi|283797838|ref|ZP_06346991.1| ribosome small subunit-dependent GTPase A [Clostridium sp. M62/1]
gi|291074526|gb|EFE11890.1| ribosome small subunit-dependent GTPase A [Clostridium sp. M62/1]
gi|295091949|emb|CBK78056.1| ribosome small subunit-dependent GTPase A [Clostridium cf.
saccharolyticum K10]
Length = 292
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 141/299 (47%), Gaps = 34/299 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+D G C + + + K + LVGD V +D + G I +V +R ++ P V+N
Sbjct: 16 HDGQGRVYECKAKGVFRNRKIKPLVGDNVEFEILDDREATGNIVSVLERKNSLIRPAVSN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD L++F++ +P L RFLV E IP + NK++L EE + ++ G
Sbjct: 76 VDQALVVFAITEPMPNLNLLDRFLVMMERQQIPAVICFNKIDLSSEEEMEKLRAIYGPAG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
YE F S + GL + + +R +TTV+ GPSGVGKSSL N ++ P A
Sbjct: 136 YEIHFISTYEEAGLKEIHELIRHKTTVLAGPSGVGKSSLTNFIQ--PDAC---------- 183
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G VS K RGKHTTRH L + Y+ DTPGF+ + + + L
Sbjct: 184 ----------METGVVSEKIKRGKHTTRHCELFFVEENTYMMDTPGFSSMYIEDIKPEEL 233
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+ FPE A E C F C+H+GE C VK + RY Y L E++
Sbjct: 234 KEYFPEF-----AAEEDGCRFLGCVHVGERVCGVKEAVKAGRISRSRYDNYLLLYKELK 287
>gi|392957480|ref|ZP_10323003.1| GTPase RsgA [Bacillus macauensis ZFHKF-1]
gi|391876443|gb|EIT85040.1| GTPase RsgA [Bacillus macauensis ZFHKF-1]
Length = 296
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 142/294 (48%), Gaps = 41/294 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V S D G I ++ +R E+ PP++NVD +L+FS
Sbjct: 27 CRGRGNFRKKKITPLVGDWVQYESTSPTD--GYILDIKERKNELNRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTWGYEPLF 141
+P L RFLV E+ GI + + K++LV +E T + GYE +
Sbjct: 85 AVRPTFSTTLLDRFLVHIEANGITPVICITKMDLVQDEKQQTEMLSYIEDYQRLGYEVIA 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +S G++ + +++T+V G SGVGKSSL+NAL P L
Sbjct: 145 TSAKSLEGMNEIKPVFKERTSVFAGQSGVGKSSLLNALM----------------PDL-- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
++S GRGKHTTRHV LLP G +ADTPGF+ + + + L+ FP
Sbjct: 187 ----KLETNDISDHLGRGKHTTRHVELLPFE-EGLVADTPGFSSLDFVDIEIEELSFYFP 241
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
E+ L A C F C H EP C +K E RY++Y + L EI+
Sbjct: 242 EMNSRL-----ADCKFRGCTHSSEPKCAIKEAVEHGEIPTFRYKHYLEFLQEIK 290
>gi|56964079|ref|YP_175810.1| ribosome-associated GTPase [Bacillus clausii KSM-K16]
gi|81365956|sp|Q5WFL1.1|RSGA_BACSK RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|56910322|dbj|BAD64849.1| GTPase [Bacillus clausii KSM-K16]
Length = 293
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 142/298 (47%), Gaps = 40/298 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R + +K K+ LVGD V + + D G + + +R ++ PP+ANVD
Sbjct: 20 GALIQCRGRGVFRKRKQTPLVGDYVEFEAENETD--GYVMAIKERKNQLNRPPIANVDQA 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+L+FS +P L RFLV E I L ++K +L+ + + L + GY
Sbjct: 78 ILVFSAKEPDFHTLLLDRFLVHIEQHDIKPVLIISKTDLLEASERDALTRQVAMYEQIGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L+ S + LL L +Q +VI G SGVGKSSL+NAL +P A +
Sbjct: 138 PVLYTSTKQADDPSELLPLLANQVSVIAGQSGVGKSSLLNAL--APEAKIETN------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
E+S GRG+HTTRH LLP+ G G +ADTPGF+ + + L
Sbjct: 189 -------------EISRHLGRGRHTTRHTELLPI-GEGLVADTPGFSSLEFTDMEAEDLR 234
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
FPE ++ C F CLH EP C +K E RY++Y Q L EI+
Sbjct: 235 FCFPEFLSLMD-----DCKFRGCLHDKEPKCAIKDAVETGEVDSFRYKHYLQFLHEIQ 287
>gi|160880617|ref|YP_001559585.1| ribosome small subunit-dependent GTPase A [Clostridium
phytofermentans ISDg]
gi|160429283|gb|ABX42846.1| ribosome small subunit-dependent GTPase A [Clostridium
phytofermentans ISDg]
Length = 291
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 145/298 (48%), Gaps = 35/298 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
E C + + + K + LVGD V V +D + G I ++ +R +E++ P VAN+D ++
Sbjct: 22 EYECKAKGIFRNRKIKPLVGDDVEVEILDKDSKTGNIVDILERKSELIRPAVANIDQAMI 81
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ P L RFLV E GI + NK++ +EE + GY+ LF
Sbjct: 82 IFAVSDPAPNYNLLDRFLVMMEQQGIQTIICFNKMDKAEEEERKKVEEVYRNTGYQILFT 141
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ + LR ++T + GPSGVGKSSL N L+S
Sbjct: 142 NALAG-DIEEVKAVLRGKSTALAGPSGVGKSSLTNRLQSKV------------------- 181
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G++S K RGKHTTRH L+ + YL DTPGF+ L + K+ L FPE
Sbjct: 182 ---SMQTGQISEKIKRGKHTTRHSELIYMEEHTYLLDTPGFSSLYLKDIEKEVLQTFFPE 238
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEF 313
L +C FN C H+ EP C VK RY+ Y L +E++ ++++
Sbjct: 239 FDHYL-----GQCRFNGCAHINEPDCAVKEALSEGKISESRYENYKLLFEELKNQKKY 291
>gi|381395930|ref|ZP_09921624.1| ribosome-associated GTPase [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328495|dbj|GAB56757.1| ribosome-associated GTPase [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 349
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 148/302 (49%), Gaps = 52/302 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEI--------LDPPVA 75
C +R +K V+ GD+VV ++ R G+IE V R +E+ L P A
Sbjct: 70 CYIRRTIKS----VVCGDQVVFRPSTTLEERDRGIIEVVIDRKSELSRPDYYDGLKPIAA 125
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S+ P L + R+LV E I + +NKVEL+ E L + L +
Sbjct: 126 NIDQIIVVGSI-VPALSTHIIDRYLVACEHARISPIIVINKVELLTNEALVQVEKDLEVY 184
Query: 136 ---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY + S S+ GLD+L L+D+ V+VG SGVGKSSLIN L
Sbjct: 185 TQIGYRVIMASCVSQAGLDALSSVLKDKVNVLVGQSGVGKSSLINQLLPDSQ-------- 236
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ VGEVS SG G+HTT L+P S GG L D+PG + L +
Sbjct: 237 --------------ETVGEVSGNSGLGQHTTTAAKLIPFSLGGELIDSPGVREFGLWHLP 282
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLD 305
Q + Q F E++E L C F++C H +PGC++ K + ERYQ Y +++D
Sbjct: 283 VQDITQGFVELREYL-----GGCKFSDCTHRNDPGCLIREAVELNKINNERYQSYLKIVD 337
Query: 306 EI 307
+
Sbjct: 338 SL 339
>gi|343520557|ref|ZP_08757526.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397515|gb|EGV10049.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 291
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 40/287 (13%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + + K +VGD V + + D I VF+R EIL PPV NVD +++FSM +
Sbjct: 29 RGVFRNKKLSPMVGDNVKIEIFE--DDTAYIVEVFERKNEILRPPVVNVDQAIIVFSMKE 86
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P++ + R+++ E IP+ L LNK +L+D+E+ +K+ GY+ +F S+ L
Sbjct: 87 PEISYKIIDRYIMYYEIMKIPIVLCLNKCDLIDKELEIDFKNTYEKLGYKIIFNSIS--L 144
Query: 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
L + + +D+ +VI GPSGVGKS+++N L + W
Sbjct: 145 DNKKLFEEICKDKISVITGPSGVGKSTILNFLNPKYNI--------W------------- 183
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
VGE+S K+ RGKHTTR +L ++ DT GF L K +I++
Sbjct: 184 -VGEISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTKFIDNE-----TQIRDAF 237
Query: 268 KANE-PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
E +KC F++C H+ EP C VK + E RY Y L+E
Sbjct: 238 VEFELGSKCKFSDCKHINEPNCFVKDELEKGNISKSRYDSYIFYLNE 284
>gi|163783506|ref|ZP_02178497.1| hypothetical protein HG1285_08834 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881270|gb|EDP74783.1| hypothetical protein HG1285_08834 [Hydrogenivirga sp. 128-5-R1-1]
Length = 295
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 41/281 (14%)
Query: 36 KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFA 95
K ++ GD+VV +D IE++ +R ++ PPVANVD ++ + ++ +P + +
Sbjct: 36 KTKIYAGDRVVGNVVDG--ETFAIEDIERRKNVLIRPPVANVDRVICVMTLRRPDFDNYL 93
Query: 96 LTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152
L LV + G + NK++L+ D E LN W + YE + S E+ GLD
Sbjct: 94 LDSLLVVYDHVGCEPVIVFNKIDLLTARDREELNRWSDIYTSANYEVVHVSAETGEGLDR 153
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+++ +R + ++ GPSG GKSS++ L E+ R GEV
Sbjct: 154 IVELVRGEICILAGPSGAGKSSILKRLTG-----------------------EELRTGEV 190
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272
S K+ RG+HTT V L+PL G ++ D+PGF++ L+ ++ E+K +
Sbjct: 191 SEKTERGRHTTTGVKLIPLGNGAFIGDSPGFSRVEALQFVRKR------EVKNYFREFLR 244
Query: 273 AKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDE 306
+C + +C+HL EPGC VK ERY+ Y ++L E
Sbjct: 245 HECRYPDCMHLREPGCGVKKALKRGEISCERYKSYLKMLKE 285
>gi|376261168|ref|YP_005147888.1| ribosome small subunit-dependent GTPase A [Clostridium sp. BNL1100]
gi|373945162|gb|AEY66083.1| ribosome small subunit-dependent GTPase A [Clostridium sp. BNL1100]
Length = 305
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 139/290 (47%), Gaps = 35/290 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G ++ + R +E++ P VANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDEAKKLGNVDEILPRISELVRPAVANVDQIAIVVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ +E+ I + + +NK++L D+ ++ YE + S
Sbjct: 87 AKAPNPDYMLLDKLLITSETKNIRVIICINKIDL-DDGTAKNIRNAYSLADYEVVEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L+ TV G SGVGKS+++N + +D+W
Sbjct: 146 QNVGYKRLKEELKGHITVFAGQSGVGKSTILNHI-----------MDSWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RGKHTTRH LL L GGY+ADTPGF+ ++ + L +PE +
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEIIDIPYNELESYYPEFRP 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIR 308
+ C FN+C H+ EPGC + + D RYQ Y QL ++
Sbjct: 244 YINT-----CRFNSCSHITEPGCRIIEALERSEIDNNRYQRYIQLYKALK 288
>gi|167768551|ref|ZP_02440604.1| hypothetical protein CLOSS21_03110 [Clostridium sp. SS2/1]
gi|317498694|ref|ZP_07956986.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167710075|gb|EDS20654.1| ribosome small subunit-dependent GTPase A [Clostridium sp. SS2/1]
gi|291560512|emb|CBL39312.1| ribosome small subunit-dependent GTPase A [butyrate-producing
bacterium SSC/2]
gi|316894036|gb|EFV16226.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 291
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D ++ G I +++R E++ P V+NVD L++F+
Sbjct: 24 CKAKGIFRNKKMKPLVGDNVEIDILDEAEQEGNITKIYERHNELIRPAVSNVDQALIIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK L RFL+ E +P+ + NKV+L E+ L + G+ F SV+
Sbjct: 84 AKNPKPNYNLLDRFLMMMEKQDVPVIVCFNKVDLAKEKELKLLEKVYENCGHIVRFISVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + + +TTV+ GPSGVGKSSL+N L+ P A
Sbjct: 144 EEEGIDEIRELIHGKTTVLAGPSGVGKSSLMNLLQ--PEAQ------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GEVS K RG+HTTRH L+ + Y+ DTPGF+ + + + F E
Sbjct: 183 -METGEVSEKIKRGRHTTRHSELIRIEKDTYVLDTPGFSSLFIHMFEEDEIKDYFQEF-- 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
A +C F C H EP C VK E RY Y + E++
Sbjct: 240 ---APYEDECRFQGCSHTHEPDCGVKKALEEGKISKIRYDNYVNIYTELK 286
>gi|148380457|ref|YP_001254998.1| ribosome-associated GTPase [Clostridium botulinum A str. ATCC 3502]
gi|153933437|ref|YP_001384680.1| ribosome-associated GTPase [Clostridium botulinum A str. ATCC
19397]
gi|153937033|ref|YP_001388201.1| ribosome-associated GTPase [Clostridium botulinum A str. Hall]
gi|254766357|sp|A7FW69.1|RSGA_CLOB1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766361|sp|A5I4T1.1|RSGA_CLOBH RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|148289941|emb|CAL84054.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929481|gb|ABS34981.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A
str. ATCC 19397]
gi|152932947|gb|ABS38446.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A
str. Hall]
Length = 292
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+E R
Sbjct: 241 FI-----GECKFTGCLHHREPNCAVKKAVEEGHIHKDRYNFYIKTLEEFMNR 287
>gi|429762817|ref|ZP_19295190.1| ribosome small subunit-dependent GTPase A [Anaerostipes hadrus DSM
3319]
gi|429180678|gb|EKY21887.1| ribosome small subunit-dependent GTPase A [Anaerostipes hadrus DSM
3319]
Length = 291
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D ++ G I +++R E++ P V+NVD L++F+
Sbjct: 24 CKAKGIFRNKKMKPLVGDNVEIDILDETEQEGNITKIYERHNELIRPAVSNVDQALIIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK L RFL+ E +P+ + NKV+L E+ L + G+ F SV+
Sbjct: 84 AKNPKPNYNLLDRFLMMMEKQDVPVIVCFNKVDLAKEKELKLLEKVYENCGHIVRFISVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + + +TTV+ GPSGVGKSSL+N L+ P A
Sbjct: 144 EEEGIDEIRELIHGKTTVLAGPSGVGKSSLMNLLQ--PEAQ------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GEVS K RG+HTTRH L+ + Y+ DTPGF+ + + + F E
Sbjct: 183 -METGEVSEKIKRGRHTTRHSELIRIEKDTYVLDTPGFSSLFIHMFEEDEIKDYFQEF-- 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
A +C F C H EP C VK E RY Y + E++
Sbjct: 240 ---APYEDECRFQGCSHTHEPDCGVKKALEEGKISKIRYDNYVNIYTELK 286
>gi|345021915|ref|ZP_08785528.1| GTPase RsgA [Ornithinibacillus scapharcae TW25]
Length = 293
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 149/297 (50%), Gaps = 42/297 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDR-RGMIENVFQRSTEILDPPVANVDHLLLLF 84
C R + +K LVGD V S D + G I V R+ E++ PP+AN+ +++
Sbjct: 25 CKSRGVFRKKNITPLVGDYV---SFDHREENEGYITEVKVRTNELIRPPIANITQAIIVS 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEV--LNTWKSRLHTWGYEPLF 141
S P L RFLV E+ GI + + K +L+ DE++ L +++ GY+
Sbjct: 82 SATMPDFSTTLLDRFLVLIEAKGITPIIFITKTDLLTDEQIVDLKEYQADYEGIGYKVEM 141
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + + L+DQ TVI G SGVGKSSLINAL SP E +L
Sbjct: 142 FSAKDPKEMVRIKDYLKDQVTVIAGQSGVGKSSLINAL--SP------------ESLL-- 185
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ ++S GRGKHTTRHV L+ ++ G +ADTPGF+ ++ L+ FP
Sbjct: 186 ------KTADISKSLGRGKHTTRHVELIEIN-NGLVADTPGFSALDFSEIEADELSSCFP 238
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E++E L+ C F CLH EP C VK E RY++Y L+EI+ R+
Sbjct: 239 EMRERLE-----NCKFRGCLHAKEPKCAVKDAVEQGEIPMYRYEHYISFLEEIQSRK 290
>gi|424779929|ref|ZP_18206815.1| Ribosome small subunit-stimulated GTPase EngC [Catellicoccus
marimammalium M35/04/3]
gi|422843468|gb|EKU27905.1| Ribosome small subunit-stimulated GTPase EngC [Catellicoccus
marimammalium M35/04/3]
Length = 297
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 145/290 (50%), Gaps = 43/290 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K LVGD V S VD GMI ++ R++E+ P VANV ++++ S+
Sbjct: 26 ARGNFRKKGESPLVGDWVEFESTSEVD--GMITKIYPRTSELKRPHVANVSQVIIVMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFCSV 144
P P L RFLV+AES G+ L +K++L+ + E + +K + GY LF
Sbjct: 84 DPNFSPLLLDRFLVQAESLGMKTILYWSKIDLLTTEEREAIENYKEQYMALGYPVLFG-- 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
E + L L+D+ TV++G SGVGKS+L+NAL P
Sbjct: 142 EEGIVNPELFSYLKDELTVLMGQSGVGKSTLLNALH--PEGK------------------ 181
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ +GEVS GRG+HTTRH L + G++ DTPGF+ L+V LAQ F E +
Sbjct: 182 --REIGEVSQALGRGRHTTRHTELWSIH-DGWIVDTPGFSSLD-LEVDATELAQCFVEYR 237
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+ +C F +CLHL EP C VK + ERY+ Y L E+
Sbjct: 238 AL-----APQCKFRSCLHLKEPSCAVKEAVAEGKLNQERYERYELLQTEL 282
>gi|225028099|ref|ZP_03717291.1| hypothetical protein EUBHAL_02369 [Eubacterium hallii DSM 3353]
gi|224954569|gb|EEG35778.1| ribosome small subunit-dependent GTPase A [Eubacterium hallii DSM
3353]
Length = 311
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 38/291 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K + VGD V + + ++ G + + +R +++ P ANVD L++F+
Sbjct: 44 CRARGIFRNKKMKPNVGDVVDIDILSEEEKTGNLVKIHKRKNQLIRPMAANVDQALVIFA 103
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+ L RFL+ E IP+ + NK +L E + + G + +F +
Sbjct: 104 VHEPEPNFHLLNRFLITMEQQEIPVIICFNKTDLATTEQMQQLEKDYENSGCQVIFQAAA 163
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+ + + LR +TT++ GPSGVGKSS +N + +
Sbjct: 164 TGEGITQIEELLRGRTTIMAGPSGVGKSSTLNCISKE----------------------K 201
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RGKHTTRH L+ + YL DTPGF+ L + K+ L FPE
Sbjct: 202 QMETGAVSEKIKRGKHTTRHSELIHIGEDTYLMDTPGFSSLFLENIEKEDLKYYFPEF-- 259
Query: 266 MLKANEPAK--CSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
EP + C FN C H+ EPGC VK E RY Y +E+
Sbjct: 260 -----EPYENTCRFNGCCHIHEPGCEVKKALEEGKISKLRYDDYCMFYEEL 305
>gi|355670260|ref|ZP_09057115.1| ribosome small subunit-dependent GTPase A [Clostridium citroniae
WAL-17108]
gi|354816332|gb|EHF00920.1| ribosome small subunit-dependent GTPase A [Clostridium citroniae
WAL-17108]
Length = 292
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D G I+ + RS ++ P ANVD L++F+
Sbjct: 25 CKAKGVFRNRKIKPLVGDNVEFSVLDQEAGEGNIDVILPRSNALVRPAAANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV +P+ + NKV+L DE+++ T++ T GY F S
Sbjct: 85 LTHPAPNLNLLDRFLVMMGIQEVPVIICFNKVDLGDEDLVETYRKIYETAGYRVAFISTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GL+ + + LR +TTV+ GPSGVGKSSL N ++ P A+
Sbjct: 145 EETGLEQVRKILRGKTTVLAGPSGVGKSSLTNCIQ--PCAA------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G++S K RGKHTTRH L + Y+ DTPGF+ + L FPE
Sbjct: 184 -METGDISQKIERGKHTTRHCELFYVEEDTYMMDTPGFSSMFTPDLEAGDLKDYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+ C F C+H+GE C VK + RY Y + +E++ + +
Sbjct: 241 ---SGYEDGCKFLGCVHVGERVCGVKEALKAGGLSQSRYDNYLLMYEELKNKRRY 292
>gi|168180614|ref|ZP_02615278.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
NCTC 2916]
gi|226949856|ref|YP_002804947.1| ribosome-associated GTPase [Clostridium botulinum A2 str. Kyoto]
gi|387818726|ref|YP_005679073.1| ribosome small subunit-stimulated GTPase EngC [Clostridium
botulinum H04402 065]
gi|421836150|ref|ZP_16270715.1| GTPase RsgA [Clostridium botulinum CFSAN001627]
gi|254766362|sp|C1FSS3.1|RSGA_CLOBJ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|182668535|gb|EDT80514.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
NCTC 2916]
gi|226843103|gb|ACO85769.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A2
str. Kyoto]
gi|322806770|emb|CBZ04339.1| ribosome small subunit-stimulated GTPase EngC [Clostridium
botulinum H04402 065]
gi|409742031|gb|EKN41588.1| GTPase RsgA [Clostridium botulinum CFSAN001627]
Length = 292
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+E R
Sbjct: 241 FI-----GECKFTGCLHHREPNCAVKKAVEEGHIHKNRYDFYIKTLEEFMNR 287
>gi|323489540|ref|ZP_08094767.1| GTPase engC [Planococcus donghaensis MPA1U2]
gi|323396671|gb|EGA89490.1| GTPase engC [Planococcus donghaensis MPA1U2]
Length = 298
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 144/296 (48%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + ++ G I +V+ R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADNELE--GTILHVYDRKNELVRPPIANVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
QP P L RFL ES I + L K++L+ EE + + + GYE +
Sbjct: 85 AKQPDFHPLLLDRFLTAIESHSIQPVICLTKMDLLKEEEKEKIQQYIKDYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ D L+ L + +V+ G SGVGKS+++N + S
Sbjct: 145 FIDDPALKDRLMPVLEGKISVLAGQSGVGKSTMLNTILPS-------------------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 185 --LELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A C F CLHL EP C +K E RY++Y + L+EI R+
Sbjct: 242 F-----AARSNACKFRECLHLNEPKCAIKAAVEAKEIPDYRYKHYLKFLEEIMSRK 292
>gi|433462305|ref|ZP_20419892.1| GTPase RsgA [Halobacillus sp. BAB-2008]
gi|432188993|gb|ELK46135.1| GTPase RsgA [Halobacillus sp. BAB-2008]
Length = 293
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 146/298 (48%), Gaps = 44/298 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVANVDHLLLL 83
C R +K K LVGD V + D R G I ++ +R E + PP+ANVD L++
Sbjct: 25 CRGRGNFRKKKVSPLVGDMVEFKA----DNREEGYILSIEERKNEFVRPPIANVDQALIV 80
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPL 140
S +P L RFLV E+ I + ++K++ +DE+ + +++ GY +
Sbjct: 81 TSATRPDFNALLLDRFLVLVEAKRIEPIIVISKMDRLDEDQVKEMQHYETMYGEIGYPVI 140
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
+V +D + L D+TTVI G SGVGKSSL+N++ S + D D
Sbjct: 141 LSAVNDPEAMDLIQSHLADRTTVIAGQSGVGKSSLLNSIDSRL----SIDTD-------- 188
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
E+S GRGKHTTRHV L +S G +ADTPGF+ + + L + F
Sbjct: 189 ----------EISESLGRGKHTTRHVELYEIS-NGLVADTPGFSSLEFADLELEQLPECF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
PE + C F CLH EP C VK + E RYQ+Y Q L+EI+ R+
Sbjct: 238 PEFVAVQDG-----CKFRGCLHHKEPKCAVKMEVEAGNISSQRYQHYLQFLEEIQNRK 290
>gi|402839122|ref|ZP_10887615.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
OBRC8]
gi|402270661|gb|EJU19919.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
OBRC8]
Length = 305
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 35/288 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +++ GY+ + S + +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEDKYYKDIVKVYQNIGYQTVEISSDDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
++S K +GK+TT + +LL Y+ADTPGF + + K L F E K+
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFDKNSYIADTPGFTSLKITDIDKYELKDYFLEFKKF-- 252
Query: 269 ANEPAKCSF-NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F + CLH EP C +K + RY Y ++L++I+
Sbjct: 253 ---EDDCKFASKCLHEYEPCCGIKNAVQNGEIQKSRYDSYLKILNDIK 297
>gi|293375001|ref|ZP_06621296.1| ribosome small subunit-dependent GTPase A [Turicibacter sanguinis
PC909]
gi|325843365|ref|ZP_08167948.1| ribosome small subunit-dependent GTPase A [Turicibacter sp. HGF1]
gi|292646411|gb|EFF64426.1| ribosome small subunit-dependent GTPase A [Turicibacter sanguinis
PC909]
gi|325489394|gb|EGC91767.1| ribosome small subunit-dependent GTPase A [Turicibacter sp. HGF1]
Length = 295
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K LVGD+V + D G + + R E++ PP+ANVD L++FS
Sbjct: 27 CRSRGLFRKQKITPLVGDRVRF--LVEEDGNGYVMEIEDRQNELVRPPIANVDLALVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFL E I + L K +L+ + EVL+ GY+ +
Sbjct: 85 VKEPDFNVKLLDRFLAVIEMNRIEPIIVLTKFDLLSKEEHEVLDPIFDYYRQIGYQVIET 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +++G++++ + ++D+ V+ G SGVGKSSL+N++ +
Sbjct: 145 SSRNQVGIEAITELIKDRIIVVCGQSGVGKSSLLNSIDETL------------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D +V E+S GRGKHTTRHV L LS GG +ADTPGF+ L ++ L++ F +
Sbjct: 186 ---DIQVNEISKALGRGKHTTRHVELHKLS-GGLIADTPGFSSLDLDQLEATDLSECFID 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E+ +C F C+H EP C VK E RY Y Q L EI+ R+
Sbjct: 242 FYEL-----SDQCKFRGCVHEFEPNCAVKRAVENHEVLSSRYDNYLQFLTEIKSRK 292
>gi|255657709|ref|ZP_05403118.1| ribosome small subunit-dependent GTPase A [Mitsuokella multacida
DSM 20544]
gi|260849897|gb|EEX69904.1| ribosome small subunit-dependent GTPase A [Mitsuokella multacida
DSM 20544]
Length = 298
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 146/296 (49%), Gaps = 47/296 (15%)
Query: 26 CVVRALLKKIKRR--VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R KK ++ V+ GD+V + + D G+IE R + P VAN+ ++L
Sbjct: 25 CKLRGKFKKRRQSTGVVPGDRVAIELLP--DGTGVIEQQLPRVNLLRRPAVANLTQVILT 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLH---TWGYEP 139
F+ P L P L RFLV AE +GIP + + +NK++L + W+ L T GY
Sbjct: 83 FAAAAPDLHPLLLNRFLVLAEWSGIPKIVICVNKMDLHE----GPWQDFLRDYETIGYPV 138
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+ S ++ G+D L RLR + +V GPSGVGKSSL+N + +P + A
Sbjct: 139 VRVSAQTGQGIDVLRSRLRGEVSVFAGPSGVGKSSLLNQV--NPALTLA----------- 185
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G VS K RG+HTTR LLP GGY+ DTPGF+ + ++ L
Sbjct: 186 ---------TGHVSEKIKRGRHTTRVAELLPYE-GGYIVDTPGFSAMEMAELQVTDLPHY 235
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
FPE + A C F+ C H EPGC VK ERY Y Q+L E++
Sbjct: 236 FPEFRPYEGA-----CRFSPCSHTHEPGCAVKAAVEERSITRERYDAYEQILQEVK 286
>gi|393201775|ref|YP_006463617.1| GTPase [Solibacillus silvestris StLB046]
gi|406664652|ref|ZP_11072427.1| Putative ribosome biogenesis GTPase RsgA [Bacillus isronensis
B3W22]
gi|327441106|dbj|BAK17471.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387500|gb|EKB46924.1| Putative ribosome biogenesis GTPase RsgA [Bacillus isronensis
B3W22]
Length = 293
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 40/300 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+K G + C R + + LVGD V S D + G I+ + +R E++ PP+ANV
Sbjct: 17 EKDGNLIQCRARGIFRNRGESPLVGD-FVEYSYDG-ESDGSIDKILERHNELVRPPIANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHT 134
D LL+FS +P L RFLV ES + + L K++L+++ L T+
Sbjct: 75 DQALLVFSAKEPDFNTVLLDRFLVVLESFHVQPIIILTKMDLLNDAERAHLQTYIDDYKE 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ + ++ L+ + L+++T+V+ G SGVGKS+L+N L
Sbjct: 135 IGYDIIETYIDDPTLLEKIEPYLQEKTSVLAGQSGVGKSTLLNTLL-------------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D + G +S GRGKHTTRHV L+ + GG LADTPGF+ + K+
Sbjct: 181 --PEL------DLKTGIISKSLGRGKHTTRHVELIEVC-GGLLADTPGFSSFDFEMIEKE 231
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L PE + + C F CLH+ EP C VK E RY++Y Q+L EI
Sbjct: 232 ELTSCLPEFERI-----SENCKFRGCLHIKEPKCAVKQAVETGEIRSYRYEHYEQILQEI 286
>gi|169827068|ref|YP_001697226.1| GTPase EngC [Lysinibacillus sphaericus C3-41]
gi|168991556|gb|ACA39096.1| Probable GTPase engC [Lysinibacillus sphaericus C3-41]
Length = 294
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V S++ G I+ + +R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYSLETEGSDGTIQKILERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV--DEEV-LNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L+ DE L ++ + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENDERTELQSYITDYENMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLQPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FPE
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSFDFDEIEKEELGACFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I M C F CLH+ EP C VK E RY++Y Q + EI R+
Sbjct: 241 IARM-----ADHCKFRGCLHMKEPKCAVKASVEAGEIRDYRYKHYEQFMQEIMDRK 291
>gi|299535926|ref|ZP_07049246.1| GTPase engC [Lysinibacillus fusiformis ZC1]
gi|424738864|ref|ZP_18167293.1| GTPase engC [Lysinibacillus fusiformis ZB2]
gi|298728678|gb|EFI69233.1| GTPase engC [Lysinibacillus fusiformis ZC1]
gi|422947348|gb|EKU41745.1| GTPase engC [Lysinibacillus fusiformis ZB2]
Length = 294
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 147/296 (49%), Gaps = 39/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V +++ G I+ +F+R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYTMETEGSDGTIQKIFERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L++ E L + + + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENDEREELQNYIADYESMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLRPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FPE
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSLDFDEIEKEELGVCFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ A C F CLHL EP C VK E RY++Y Q + EI R+
Sbjct: 241 M-----ARVADDCKFRGCLHLKEPKCAVKAAVEAGEIRDYRYKHYEQFMQEIMDRK 291
>gi|170758682|ref|YP_001787818.1| ribosome-associated GTPase [Clostridium botulinum A3 str. Loch
Maree]
gi|254766365|sp|B1KX53.1|RSGA_CLOBM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|169405671|gb|ACA54082.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A3
str. Loch Maree]
Length = 292
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + S+D + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SVDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPEFRD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+E R
Sbjct: 241 FI-----GECKFTGCLHHREPNCAVKKAVEEGHIHKNRYDFYIKTLEEFMNR 287
>gi|384135001|ref|YP_005517715.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289086|gb|AEJ43196.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 291
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 143/293 (48%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R T ++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTGLIRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSPERAAATVELYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSLLRARLQGRVTVLAGPSGAGKSTLANAL--APGISF------------------ 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE +
Sbjct: 183 --KTGEVSEKIGRGRQTTRHVELVRLDDVTWMADAPGFSQLQ-VPVASREVRLHFPEFRP 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ + +C++ +CLHL E C VK E RY Y QL +E R +E
Sbjct: 240 LAQ-----ECAYRDCLHLDEDNCAVKRAVEEGDIPAIRYMSYRQLYEEAREQE 287
>gi|150021381|ref|YP_001306735.1| ribosome small subunit-dependent GTPase A [Thermosipho
melanesiensis BI429]
gi|149793902|gb|ABR31350.1| ribosome small subunit-dependent GTPase A [Thermosipho
melanesiensis BI429]
Length = 288
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 39/290 (13%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R K+ R +VGD V I V + G+IEN+ R E+ P +AN+D ++++
Sbjct: 27 MCKLRGKFKEQGIRPIVGDCVEFRPI--VGKEGVIENILNRKNELKRPKIANIDQVVVVT 84
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
S+ +P + L R+LV E+ +P + LNK +L+ + ++ + +++ Y S
Sbjct: 85 SLKKPNVPLKILDRYLVLVENAKLPAVIVLNKCDLLSRKEIDNFLD-IYSKLYSVYVVSA 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++K+G+D L+ +++ + + G SGVGKSS++NA+ +P S
Sbjct: 144 KNKIGIDKLIDVFKNKVSTMAGMSGVGKSSILNAI--NPGLS------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
RVGE+S K RGKHTT + L GG++ADTPGF + + ++ L + FPE
Sbjct: 184 --LRVGEISEKLDRGKHTTTVIEFLKFDFGGWVADTPGFANLDISDIERERLKEYFPEFG 241
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C + +C H+ EP C VK E RY+ YF + E+
Sbjct: 242 SYF-------CLYPDCNHINEPECGVKNAVEKGLIAKTRYESYFDMFQEL 284
>gi|354558662|ref|ZP_08977916.1| ribosome biogenesis GTPase RsgA [Desulfitobacterium metallireducens
DSM 15288]
gi|353545724|gb|EHC15174.1| ribosome biogenesis GTPase RsgA [Desulfitobacterium metallireducens
DSM 15288]
Length = 297
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 44/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V +R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIQGQEFLTGDRVQI--LPSNGNKATIEKVEERRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-----DEEVLNTWKSR--LHTWGYE 138
+ P+ + L R L++ GI + LNKV+ D N+ S Y+
Sbjct: 83 LVSPRPDLNLLDRLLIQVSEVGIKPVIILNKVDQAEVNSEDATAENSISSLDFYQNLHYD 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + G+ + + L+D+ TV+ GPSGVGKSSL+NAL EP
Sbjct: 143 LIKVSTRTGQGIAEVREHLKDKVTVLAGPSGVGKSSLVNAL----------------EP- 185
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
FE + GE+S K RG+HTTRHV L+ + G G LADTPGF+ L K+ ++ L
Sbjct: 186 ----GFE-LKTGEISRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPKMKREELTL 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE A+ P KC F +C+H EP C +K E RY++Y L+E+
Sbjct: 240 FFPEF-----ADVPGKCRFTSCVHHKEPDCAIKAAVESGQIEKSRYEHYCLFLEEV 290
>gi|433655115|ref|YP_007298823.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293304|gb|AGB19126.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 291
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 136/276 (49%), Gaps = 38/276 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V + + + D G I N+ R E++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDNVDIDTENLKD--GFIINIHNRKNELVRPPVSNVDQAIITFSIVNPALNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++ E GI + +NK++LV E+V + GY+ + S +G+D L L
Sbjct: 98 IILVELNGIHPVICINKIDLVTEDVFTPLYNLYKNLGYDVIATSKFDNIGIDKLKAMLIG 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T+ GPSGVGKSSLIN ++ + Q +G++S K RG
Sbjct: 158 KTSFFTGPSGVGKSSLINCIQGT----------------------NKQEIGDLSEKLLRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
KHTTR+V L+P GY+ DTPGF + L + + L F + + N C F +
Sbjct: 196 KHTTRNVELIPFE-NGYVLDTPGFTSLN-LDIDETELKYYFRDFR-----NYELDCRFKS 248
Query: 280 CLHLGEPGCVVK-------GDWERYQYYFQLLDEIR 308
CLH+ EP C VK D RY Y L +E++
Sbjct: 249 CLHINEPDCGVKIAVSNGLIDKIRYSNYLNLYNELK 284
>gi|363891851|ref|ZP_09319026.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM2]
gi|361964846|gb|EHL17852.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM2]
Length = 305
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 35/288 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +++ GY+ + S +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEDKNYKDIVKVYQNIGYQTVEISSNDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E K+
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLEFKKF-- 252
Query: 269 ANEPAKCSF-NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F + CLH EP C +K + RY Y ++L++I+
Sbjct: 253 ---EDDCKFASKCLHEYEPCCGIKNAVQNGEIQKSRYDSYLKILNDIK 297
>gi|160939806|ref|ZP_02087153.1| hypothetical protein CLOBOL_04697 [Clostridium bolteae ATCC
BAA-613]
gi|158437240|gb|EDP15005.1| hypothetical protein CLOBOL_04697 [Clostridium bolteae ATCC
BAA-613]
Length = 292
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 146/295 (49%), Gaps = 34/295 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D ++ G I+ + RS ++ P VANVD L++F+
Sbjct: 25 CKAKGVFRNRKIKPLVGDNVEFSVLDEEEKEGNIDVILPRSNVLIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV G+P+T+ NKV+L + +++ ++ GYE F S
Sbjct: 85 ITHPEPNLNLLDRFLVMMGIQGVPVTICFNKVDLGEAGLVDKYRVIYERAGYEVHFVSTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GL+ + + LR +T+V+ GPSGVGKSSL N ++ P A+
Sbjct: 145 EDTGLEEMKKFLRGKTSVLAGPSGVGKSSLTNCIQ--PQAA------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G++S K RG+HTTRH L + Y+ DTPGF+ + + L FPE
Sbjct: 184 -METGDISRKIERGRHTTRHSELFYVEENTYMMDTPGFSSMFIDCLEPGELKDYFPEF-- 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQY--YFQLLDEIRIREEF 313
+C F C+H+GE C VK G+ R +Y Y + ++++ + +
Sbjct: 241 ---GPYEEECKFLGCVHVGERVCGVKEALKRGELSRSRYDNYILMYEDLKNKRRY 292
>gi|325290441|ref|YP_004266622.1| ribosome biogenesis GTPase RsgA [Syntrophobotulus glycolicus DSM
8271]
gi|324965842|gb|ADY56621.1| ribosome biogenesis GTPase RsgA [Syntrophobotulus glycolicus DSM
8271]
Length = 290
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 146/293 (49%), Gaps = 38/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + K+ + GDKV++ S + + IE V R ++ P +ANVD LL+ +
Sbjct: 26 CSLRGRFRVKKQDFIPGDKVMILSDRGI--KATIEEVLARENSLIRPNIANVDQALLVLA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M P + L R LV+ GI + K +L E L+ ++ T G + S
Sbjct: 84 MSTPDTDFNLLDRLLVQVAHAGIEPVIVFTKYDLARESDLSPYEY-YRTIGCRVFYVSNI 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + +R + +V+ GPSG GKSSL+N+L EP L K
Sbjct: 143 LAQGMEEVREIVRGRVSVLAGPSGAGKSSLLNSL----------------EPSLKLK--- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K GRGKHTTRHV LL + G +ADTPGF+ L + K+ L + FPE
Sbjct: 184 ---TGSVSDKLGRGKHTTRHVELLE-AAKGLIADTPGFSSLYLPPMRKEQLQEYFPEFGP 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
K +C F +CLH+ EPGC ++ + RY++Y Q L+E++ E
Sbjct: 240 YRK-----ECRFKDCLHVKEPGCALREAVQGGEMTGLRYEHYRQFLEEVKAAE 287
>gi|435853630|ref|YP_007314949.1| ribosome small subunit-dependent GTPase A [Halobacteroides halobius
DSM 5150]
gi|433670041|gb|AGB40856.1| ribosome small subunit-dependent GTPase A [Halobacteroides halobius
DSM 5150]
Length = 296
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 144/291 (49%), Gaps = 36/291 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LK+ V+ GDKV ++ D G++E R + PP+ANV+ +++ S+
Sbjct: 29 IRGRLKQRDVEVIAGDKVKFAILN--DGSGIVEERLPRENSLFRPPIANVEQVVITVSIS 86
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
P L L R L+ + + + + +NK++LV + GY L+ S E +
Sbjct: 87 NPDLHFKLLDRLLILGRAADLEIVICVNKIDLVGIKKARKIMEYYKEIGYNILYTSAEEE 146
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+ L L + L+D+ +V GPSGVGKSSL+NA+ +P L
Sbjct: 147 INLGQLEEVLQDKISVFAGPSGVGKSSLLNAI----------------QPDL------KL 184
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
R G+VS K RG+HTTR V LL L GG++ADTPGF+ + + + L F E+
Sbjct: 185 RTGKVSDKIKRGRHTTRKVELLSLDRGGWVADTPGFSALDITFIRSRELHYFFVEM---- 240
Query: 268 KANEPAKCSFNNCLHLGEPGCVVK-----GD--WERYQYYFQLLDEIRIRE 311
N +C F++C H EP C VK G+ RY +Y + L EI +E
Sbjct: 241 -LNYINQCKFSSCSHSHEPQCAVKEAVDNGNIAQHRYDHYLEFLSEIEEKE 290
>gi|456012699|gb|EMF46387.1| Ribosome small subunit-stimulated GTPase EngC [Planococcus
halocryophilus Or1]
Length = 298
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 146/296 (49%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + ++ G I +V++R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADNELE--GTILHVYERKNELVRPPIANVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ QP P L RFL ES I + L K++L+ E E + + + GYE +
Sbjct: 85 VKQPDFHPLLLDRFLTAIESHSIQPIICLTKMDLLKEEEKEKIQHYIADYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ + L+ L + +V+ G SGVGKS+++N + S
Sbjct: 145 FIDDPALKNRLMPVLEGKISVLAGQSGVGKSTMLNTILPS-------------------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 185 --LELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A C F CLH+ EP C +K E RY++Y + L+EI R+
Sbjct: 242 F-----AARSNACKFRECLHMNEPKCAIKAAVEAKEIPAYRYKHYLKFLEEIMSRK 292
>gi|23098965|ref|NP_692431.1| ribosome-associated GTPase [Oceanobacillus iheyensis HTE831]
gi|38257605|sp|Q8ER21.1|RSGA2_OCEIH RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|22777193|dbj|BAC13466.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 293
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 141/299 (47%), Gaps = 40/299 (13%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ +C R L + K LVGD V D D G I + +RS E++ PP+AN+D ++
Sbjct: 22 QFVCKGRGLFRNKKITPLVGDYVEFEPKD--DNEGYIMEIKERSNELVRPPIANIDQAII 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEP 139
+ S P L RFLV ES I + + KV+L++E E + +K GY
Sbjct: 80 VSSAVDPDFTTLLLDRFLVLIESKHIQPIILITKVDLLNEDQLENIKLYKQHYEKIGYRV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S +++ L L ++ +V G SGVGKSSLIN L S A
Sbjct: 140 ELVSSKNQDLLPELEPYFDEKVSVFAGQSGVGKSSLINVLDPSLLLETA----------- 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
E+S GRGKHTTRHV L+ + G G +ADTPGF+ ++ + LA +
Sbjct: 189 -----------EISKSLGRGKHTTRHVELMKI-GNGLVADTPGFSVLEFREIEAEELADS 236
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
FPE + C F C+H EP C VK E RY +Y + L+EI+ R+
Sbjct: 237 FPEFNARMHL-----CKFRGCMHDKEPKCAVKEAVENEEIAVFRYNHYLRFLEEIQTRK 290
>gi|258645362|ref|ZP_05732831.1| ribosome small subunit-dependent GTPase A [Dialister invisus DSM
15470]
gi|260402711|gb|EEW96258.1| ribosome small subunit-dependent GTPase A [Dialister invisus DSM
15470]
Length = 288
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 145/295 (49%), Gaps = 38/295 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKK K VLVGD V + + G+I V++R ++ PPV+NVD L+L+ S
Sbjct: 25 CRSRGALKK-KTDVLVGDHVEYEANKGFE--GVITKVYKRKNQLYRPPVSNVDELVLVSS 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L L + ++ AE+ +P + +NK +L DE GY ++ S
Sbjct: 82 ICTPDLNRGLLDKMILLAENANMPPVICINKCDL-DEVSAKRVCEEYEKAGYPCVYTSTY 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ GLD L + LR + V GPSGVGKSS++ N+F LG +F
Sbjct: 141 TQDGLDDLKKLLRGRIIVFSGPSGVGKSSIL----------------NYF---LGRSYFT 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS +G+G+ TTRH L+P G +L DTPG+ + + L F + +
Sbjct: 182 S---GAVSAYTGKGRATTRHAELVPFKTGVFLMDTPGYTLLDIDLLDIDELGFLFKDFRP 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
L KC FNNC H+ EP C ++ E RY+ Y Q+ +++ +++
Sbjct: 239 YL-----GKCYFNNCRHISEPKCAIRKAIEDGVVQKRRYESYLQIFQKLKYSKKY 288
>gi|253681449|ref|ZP_04862246.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum D
str. 1873]
gi|253561161|gb|EES90613.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum D
str. 1873]
Length = 290
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 37/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +VGD+V++ + + D G IE + +R ++ P V+N+ ++F+
Sbjct: 24 CKARGKFRKKGLTPMVGDRVIITTNN--DSYGAIEEICERDNYLIRPQVSNISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P++ L +FL++ ES I + NK++L ++ + ++ YE LF +
Sbjct: 82 LKNPEINIELLNKFLLQCESKNIKAIVCFNKLDLCEDYKEHEAVKMINESRYEYLFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L ++L+ +V GPSGVGKS+++N I+G E
Sbjct: 142 EDQGLDELKEKLQGNISVFCGPSGVGKSTILN-------------------KIVGKDIME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S + RGKHTTRH L+ ++ G++ DTPGF+ + TK+ L FPE +
Sbjct: 183 ---TGLISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDIKFDTKEELKDYFPEFHK 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+C FN CLH EP C+VK E RY++Y + L+EI
Sbjct: 239 Y-----ENQCKFNGCLHHKEPQCMVKEAVEENKINLKRYEFYTKTLEEI 282
>gi|227500115|ref|ZP_03930186.1| possible GTP-binding protein EngC [Anaerococcus tetradius ATCC
35098]
gi|227217830|gb|EEI83127.1| possible GTP-binding protein EngC [Anaerococcus tetradius ATCC
35098]
Length = 290
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 151/318 (47%), Gaps = 42/318 (13%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
++I Q E + C+DKT + R + K + LVGD V++ D D + I +
Sbjct: 5 KIIKSQKELYYVA-CDDKT---FMAKARGNFRVKKIKPLVGDNVIID--DLTDGKAYITD 58
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ +R EI P ++N+D +LL ++ P L + L ++L E + + + L+K++L D
Sbjct: 59 ICERKNEIKRPNISNIDQILLFATIKNPPLNIYNLDKYLAMCEYKHMEVVIILSKIDLCD 118
Query: 122 EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
E ++ + + GY+ + + +L L+D+T+ + G SGVGKS+ +N L
Sbjct: 119 ESEIDYFTNIYKKIGYKLVCIDNYCNFPKEEILDLLKDKTSAVSGASGVGKSTFLNNL-- 176
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
VD+ D +G +S KS RGK+TTRH + ++ +L DTP
Sbjct: 177 ---------VDH------------DVEIGSISEKSKRGKNTTRHTEIFKIADNTFLFDTP 215
Query: 242 GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------ 295
GF+ + + E+K + K C F +C H+ EP C VK E
Sbjct: 216 GFDSFDI------DFIEDERELKYLFKEFRDKACKFKDCNHINEPNCAVKSALEKSLIDE 269
Query: 296 -RYQYYFQLLDEIRIREE 312
RY+ Y L +E++ R E
Sbjct: 270 GRYKNYLMLFEEVKKRRE 287
>gi|266624060|ref|ZP_06116995.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
DSM 13479]
gi|288864116|gb|EFC96414.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
DSM 13479]
Length = 291
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 126/266 (47%), Gaps = 27/266 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +R G I+ + R E++ P VAN+D L++FS
Sbjct: 24 CKAKGVFRNKKIKPLVGDNVEFTVLSEAEREGNIDKILPRKNELVRPAVANIDQALVIFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV E +P+ + NK +L + + + + GY F S
Sbjct: 84 ITHPEPNLNLLDRFLVMMEVQEVPVKICFNKTDLTGDGERDRLGNIYSSAGYPVYFTSTY 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L +TTV+ GPSGVGKSS+ N L P A
Sbjct: 144 ENSGLDELRVLTEGKTTVLAGPSGVGKSSITNLL--FPEA-------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ G++S K RGKHTTRH L + Y+ DTPGF+ L ++ +L FPE
Sbjct: 182 EMETGKISEKIQRGKHTTRHSELFAIGKDTYMMDTPGFSSMYLEELECGNLKDYFPEF-- 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK 291
A C F C+H+GEP C VK
Sbjct: 240 ---AAYEEDCKFLGCVHVGEPVCGVK 262
>gi|229918585|ref|YP_002887231.1| ribosome small subunit-dependent GTPase A [Exiguobacterium sp.
AT1b]
gi|229470014|gb|ACQ71786.1| ribosome small subunit-dependent GTPase A [Exiguobacterium sp.
AT1b]
Length = 294
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 41/308 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ E+ C R +K +VGD VV+ D D G I V +R ++ PP+
Sbjct: 14 DVMTESNQEIRCRARGNFRKRNISPVVGDDVVIQ--DQEDGTGYILEVEERQNHLVRPPI 71
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSR 131
AN+D LLFS+ +P L RFLV ES I + L K++L+ EE + +R
Sbjct: 72 ANIDQAFLLFSVKEPAFSYHLLDRFLVLIESKQIHPIIVLTKMDLLSEEETGPIQEAVAR 131
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
GY+ + S E G+D + +++T+V G +GVGKSSL+NA+ +P A
Sbjct: 132 YRDIGYDVIETSTELSDGVDQVRGLFKEKTSVFAGQTGVGKSSLLNAV--APELELAT-- 187
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LK 250
G++S GRGKHTTRHV+L+ L+ G +ADTPGF+ +
Sbjct: 188 ------------------GKISKSLGRGKHTTRHVTLIKLA-DGLVADTPGFSSLEFPQE 228
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ L FPE E C F C+H+ EPGC +K E RY+ Y
Sbjct: 229 LEADELRWCFPEFVE-----RHDDCKFRGCVHINEPGCAIKQAVEDGKIASTRYENYVTF 283
Query: 304 LDEIRIRE 311
++E+ R+
Sbjct: 284 MEELNDRK 291
>gi|389815936|ref|ZP_10207173.1| GTPase EngC [Planococcus antarcticus DSM 14505]
gi|388465430|gb|EIM07747.1| GTPase EngC [Planococcus antarcticus DSM 14505]
Length = 298
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 143/296 (48%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + D G I +V++R E++ PP+ NVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADN--DLEGTILHVYERKNELVRPPITNVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
QP P L RFL ES I + L K++L+ ++E + + + GYE +
Sbjct: 85 AKQPDFHPLLLDRFLTAIESNSIQPIICLTKMDLLKDSEKEKIQHYIADYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + L+ L + +V+ G SGVGKS+L+N + S
Sbjct: 145 FINDHALKERLMPVLEGKISVLAGQSGVGKSTLLNTILPS-------------------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 185 --LELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A C F CLH+ EP C +K E RY++Y + L+EI R+
Sbjct: 242 F-----AARSNACKFRECLHMNEPKCAIKAAVETKEIPAYRYKHYLKFLEEIMSRK 292
>gi|304316968|ref|YP_003852113.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778470|gb|ADL69029.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 291
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 38/276 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V + + + D G I N+ R E++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDNVDIDTENLKD--GFIINIHNRKNELVRPPVSNVDQAIITFSIVNPALNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++ E GI + +NK++LV E+V + GY+ + S +G+D L +
Sbjct: 98 IILVELNGIHPVICINKIDLVTEDVFAPLYNLYKNLGYDVIATSKFDNIGIDKLKAMIIG 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T+ GPSGVGKSSLIN ++ + Q +G++S K RG
Sbjct: 158 KTSFFTGPSGVGKSSLINCIQGT----------------------NKQEIGDLSEKLLRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
KHTTR+V L+P GY+ DTPGF + L + + L F + + N C F +
Sbjct: 196 KHTTRNVELIPFE-NGYVLDTPGFTSLN-LDIDETELKYYFRDFR-----NYELDCRFKS 248
Query: 280 CLHLGEPGCVVK-------GDWERYQYYFQLLDEIR 308
CLH+ EP C VK D RY Y L +E++
Sbjct: 249 CLHINEPDCGVKIAVSNGLIDKIRYSNYLNLYNELK 284
>gi|374339785|ref|YP_005096521.1| ribosome small subunit-dependent GTPase A [Marinitoga piezophila
KA3]
gi|372101319|gb|AEX85223.1| ribosome small subunit-dependent GTPase A [Marinitoga piezophila
KA3]
Length = 300
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 40/304 (13%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
T ++ +R K K + +VGD V SID V IEN+ R + P +ANVD
Sbjct: 23 TNEKITAYLRGKFKLQKIKPIVGDYVEY-SIDGVGG-AKIENILPRKNMLYRPKIANVDQ 80
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+L+ + PK++ + +FLV+ E + + LNKV+L+++ ++ + ++++ Y
Sbjct: 81 TILVTCLKSPKVDYLIIDKFLVQVEKNNLDCVIVLNKVDLLEQNEIDEF-MKIYSPLYPV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+ S + +G+D + + L+++ + G SGVGKSSL+NA+
Sbjct: 140 VLASAKKNIGIDEIKEYLKNKVSTFAGMSGVGKSSLLNAINPGLQL-------------- 185
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
RVGE+S K RGKHTT + LL GG++ADTPGF + + L +
Sbjct: 186 --------RVGEISEKLQRGKHTTTYTELLSFDFGGFVADTPGFAALEVYDFEPEKLKEF 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
F E E C FN+C+H+ EP C VK + RY+ Y ++ +E+ EE
Sbjct: 238 FIEFDE-----HSMYCGFNDCVHINEPNCGVKDAVKNGEISEIRYKNYLKIYNEV---EE 289
Query: 313 FQLR 316
+ R
Sbjct: 290 YNRR 293
>gi|222151054|ref|YP_002560208.1| hypothetical protein MCCL_0805 [Macrococcus caseolyticus JCSC5402]
gi|222120177|dbj|BAH17512.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 291
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 52/300 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I ++ +R+ ++ PPVAN+D ++++ S
Sbjct: 27 CRARGNFRKRGISPLVGDFVEFQVENETD--GYILSIDERNNSMVRPPVANIDRVIVVLS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE-------VLNTWKSRLHTWGYE 138
+P+ L +FLV+ ES GI + + K +LV++E LN ++S GYE
Sbjct: 85 AKEPEFSLNLLDKFLVKVESYGIEPVILVTKKDLVNKEEGLFIERALNHYES----IGYE 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F + ++ D+L++ + TV+ G SGVGKSS IN+L P A
Sbjct: 141 TYFVTNLNEQSYDALVKGI----TVLAGQSGVGKSSFINSL--IPDA------------- 181
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ G +S RGKHTTRHV L+PL GY+ADTPGF+ L + K L
Sbjct: 182 -------NLNTGVISNALNRGKHTTRHVELIPLQ-NGYIADTPGFSSLELDNIDKYELKN 233
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
FPE ++ +C F CLHL EP C +K RY +Y Q++ EI R+
Sbjct: 234 MFPEFVKL-----SPQCKFRECLHLNEPKCAIKTALATGEVLQSRYDHYLQMMSEIENRK 288
>gi|315303722|ref|ZP_07874234.1| ribosome small subunit-dependent GTPase A [Listeria ivanovii FSL
F6-596]
gi|313627909|gb|EFR96530.1| ribosome small subunit-dependent GTPase A [Listeria ivanovii FSL
F6-596]
Length = 291
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLTTEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S A
Sbjct: 143 NQEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTLKTA-------------- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 187 --------EISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C F CLH EP C VK E RYQ+Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKFRGCLHDNEPNCAVKTAVEANEIADFRYQHYIQILQELKNRK 288
>gi|310779113|ref|YP_003967446.1| ribosome small subunit-dependent GTPase A [Ilyobacter polytropus
DSM 2926]
gi|309748436|gb|ADO83098.1| ribosome small subunit-dependent GTPase A [Ilyobacter polytropus
DSM 2926]
Length = 284
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 43/295 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R +LKK R+ D +VG I I VF+R I P VAN+D++++ FS
Sbjct: 16 CRLRGILKKTDRK----DNCIVGDIVEFSEDCSITKVFERKNIIHRPLVANIDYIVIQFS 71
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P+L+ + ++ + I + +NK++LV+E + K+ L + F
Sbjct: 72 AMDPRLDYERINILILNSYYHRIKPVIIINKIDLVEESEIEEIKNNLDYLKALDIDLFFV 131
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +G++ + ++ T GPSGVGKSS++N L+
Sbjct: 132 STAENIGIEEVKSYIQGHVTAFGGPSGVGKSSILNLLQEGTTL----------------- 174
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFP 261
+VGE S K RGKHTTR +LLPL G++ DTPGF+ L +++ Q L FP
Sbjct: 175 -----KVGETSRKLKRGKHTTRATTLLPLKEEGFVIDTPGFSSVDLPEISNVQELIDLFP 229
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309
E +EP C F+NC+H+ EPGC VK ERY+++ + ++++I
Sbjct: 230 E----FDLDEP--CKFSNCIHVNEPGCAVKNAVEGGSISKERYEFFLRCYEKLKI 278
>gi|381183022|ref|ZP_09891791.1| GTPase RsgA [Listeriaceae bacterium TTU M1-001]
gi|380317080|gb|EIA20430.1| GTPase RsgA [Listeriaceae bacterium TTU M1-001]
Length = 257
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 143/283 (50%), Gaps = 44/283 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + + D G I ++ R E++ PPVAN+D +L+FS +P RF
Sbjct: 4 LVGDDVVFQAEN--DTDGYILDILPRENELIRPPVANIDIAILVFSAVEPDFSTNLTDRF 61
Query: 100 LVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E I + ++K++L EE + ++ GYE S++ ++L+
Sbjct: 62 LVAIEKEDIRPVIGISKMDLATEEEKRAIEKYRDIYENAGYEVFLTG--SEVDKTAILEL 119
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+ +T VI G SGVGKS+ +N L P L K GE+ST
Sbjct: 120 IDGKTAVIAGQSGVGKSTFLNQLN----------------PDLTLK------TGEISTSL 157
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276
GRG+HTTRHV LLP+ G G +ADTPGF+ + ++L FPEI+ + + C
Sbjct: 158 GRGRHTTRHVELLPI-GDGLIADTPGFSSIEWDGLEPENLQFCFPEIE-----DRRSGCK 211
Query: 277 FNNCLHLGEPGCVVK--------GDWERYQYYFQLLDEIRIRE 311
F CLH EP C VK D+ RY++Y Q+L EI+ R+
Sbjct: 212 FRGCLHENEPSCAVKTAVAEHEIADF-RYEHYVQILAEIKNRK 253
>gi|381209849|ref|ZP_09916920.1| GTPase RsgA [Lentibacillus sp. Grbi]
Length = 293
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 139/296 (46%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S + G I ++ R ++ PPVANVD +++ S
Sbjct: 25 CRGRGIFRKQKVTPLVGDFVEFDSDN--PEEGYILSIKSRRNMLIRPPVANVDQAIIVSS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
P P + RFLV ES I + + K +L+ + E + T++ GY
Sbjct: 83 AIMPDFNPLLMDRFLVLIESKEISPVIFITKKDLLSDKEMESIMTYERLYREIGYPIELV 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + D L DQ +VI G SGVGKSSL+NAL S
Sbjct: 143 SSKELEDPDRLKSYFSDQVSVIAGQSGVGKSSLLNALNPS-------------------- 182
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ +G G +ADTPGF+ ++T L FPE
Sbjct: 183 --LELKTDDISESLGRGKHTTRHVELVE-AGDGLVADTPGFSSLDFNEITAGKLGDCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ E+ A C F CLH EPGC VK RY +Y + LDEI R+
Sbjct: 240 MVEL-----KADCKFRGCLHNKEPGCAVKQAVTDGQIASGRYNHYLRFLDEINSRK 290
>gi|302671342|ref|YP_003831302.1| ribosome small subunit-dependent GTPase A RsgA [Butyrivibrio
proteoclasticus B316]
gi|302395815|gb|ADL34720.1| ribosome small subunit-dependent GTPase A RsgA [Butyrivibrio
proteoclasticus B316]
Length = 323
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 141/314 (44%), Gaps = 58/314 (18%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD V + ID + G I +F R ++L PPVANVD ++LF+
Sbjct: 25 CKAKGIFRKTNLKPLVGDDVEIDIIDEEKKLGNITEIFPRKNQLLRPPVANVDQAVILFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFL+ +P+ + NK ++ GY+ LF SV
Sbjct: 85 IVKPNPSYNLLDRFLIMMRQQNLPVIICFNKQDIATASEQQELHDAYEKCGYKVLFISVI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD L + L+ +TT + GPSGVGKSSL+N L P+A
Sbjct: 145 EEKGLDELKELLKGKTTTLAGPSGVGKSSLLNKL--VPNAQ------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLL-------------------PLSGGG-----YLADTP 241
+ G++S K RGK+TTRH L G G Y+ DTP
Sbjct: 184 -MQTGDLSRKIERGKNTTRHSELFFVEELSDNVDRNVDINVDGSADGEGTTCDTYVIDTP 242
Query: 242 GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------ 295
GF + VT +L Q +PE E EP +C F C H+ EP C VK
Sbjct: 243 GFTSLEMRDVTPDNLMQFYPEFAEY----EP-ECRFGGCSHIAEPDCGVKRAIAEGKIAK 297
Query: 296 -RYQYYFQLLDEIR 308
RY Y L +E++
Sbjct: 298 VRYDNYKVLYEELK 311
>gi|403383385|ref|ZP_10925442.1| GTPase EngC [Kurthia sp. JC30]
Length = 293
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 147/296 (49%), Gaps = 46/296 (15%)
Query: 29 RALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
R + +K LVGD V V G D G + V +R E++ PP+AN+D +L+FS
Sbjct: 28 RGVFRKRGITPLVGDFVEYEVEG-----DNDGTLTKVAERKNELVRPPIANIDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES I + L K++L+++ E + +K+ GY +
Sbjct: 83 VVEPDFNTILLDRFLVVLESFHIQPLICLTKMDLLNDAQRESIARYKADYEAIGYTVVET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ L+ + L +TTV+ G SGVGKS+L+N L P+L K
Sbjct: 143 FKDDATILEKIRPLLEGKTTVLAGQSGVGKSTLLNTLM----------------PMLNLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ ++ GG +ADTPGF+ + K+ L FP+
Sbjct: 187 ------TGVISDALGRGKHTTRHVELIEVA-GGLIADTPGFSSFDFDTIEKEELTYCFPD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQY--YFQLLDEIRIRE 311
+ + C F CLH+ EP C VK GD ++Y+Y Y Q L EI R+
Sbjct: 240 LTRL-----SEDCKFRGCLHVKEPKCAVKAALETGDLQQYRYDHYLQFLQEITDRK 290
>gi|289435162|ref|YP_003465034.1| GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171406|emb|CBH27950.1| GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 291
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NEEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C F C+H EP C VK E RYQ+Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYQHYIQILQELKNRK 288
>gi|125973094|ref|YP_001037004.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
ATCC 27405]
gi|256004597|ref|ZP_05429575.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 2360]
gi|281417289|ref|ZP_06248309.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
JW20]
gi|385779005|ref|YP_005688170.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 1313]
gi|419721500|ref|ZP_14248663.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum AD2]
gi|419725124|ref|ZP_14252177.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum YS]
gi|125713319|gb|ABN51811.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
ATCC 27405]
gi|255991469|gb|EEU01573.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 2360]
gi|281408691|gb|EFB38949.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
JW20]
gi|316940685|gb|ADU74719.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 1313]
gi|380771445|gb|EIC05312.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum YS]
gi|380782440|gb|EIC12075.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum AD2]
Length = 294
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 38/291 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K + L GD+VV+ ID ++G IE + +R +++ P VAN++ + L+ S
Sbjct: 25 CKARGVFRKDSKIPLPGDEVVISVIDEEKKKGYIEEICERKIQLIRPAVANINQIALVVS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L + L+ + + +NK++L DE + G E + S
Sbjct: 85 VKSPLPDFVLLDKLLITVMQKELNAIICINKIDL-DEGYKDVIIDCYKGTGVETVCVSSV 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G + L + L +TTV G SGVGKS+++N IL S E
Sbjct: 144 LNVGFEQLAKMLEGKTTVFAGQSGVGKSTILNK-------------------ILDSYVME 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S K RG+HTTRH LL L GG++ DTPGF+ L ++ + L +PE ++
Sbjct: 185 ---TGEISDKIERGRHTTRHAELLELKSGGFVVDTPGFSSFELSEIEPKELQNYYPEFRD 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE----------RYQYYFQLLDE 306
+ KC F C H+ EPGC+VK E RY ++ +L +
Sbjct: 242 YI-----GKCRFAGCSHISEPGCMVKSALENGMINKDRYGRYIIFYNMLKD 287
>gi|347549215|ref|YP_004855543.1| hypothetical protein LIV_1795 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982286|emb|CBW86280.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 291
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NQEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C F C+H EP C VK E RYQ+Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYQHYIQILQELKNRK 288
>gi|126649670|ref|ZP_01721906.1| ribosome-associated GTPase [Bacillus sp. B14905]
gi|126593389|gb|EAZ87334.1| ribosome-associated GTPase [Bacillus sp. B14905]
Length = 294
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 39/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V S++ G I+ + +R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYSLETEGSDGTIQKILERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L+ + E L + + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENNEHEELQRYIADYENMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLQPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FP
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSFDFDEIEKEELGACFP- 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
EM++ + C F CLH+ EP C VK E RY++Y Q + EI R+
Sbjct: 240 --EMIRVAD--HCKFRGCLHMKEPKCAVKASVETGEIRDYRYKHYEQFMQEIMDRK 291
>gi|187778902|ref|ZP_02995375.1| hypothetical protein CLOSPO_02497 [Clostridium sporogenes ATCC
15579]
gi|187772527|gb|EDU36329.1| ribosome small subunit-dependent GTPase A [Clostridium sporogenes
ATCC 15579]
Length = 301
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 142/292 (48%), Gaps = 37/292 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + +ID + +G IE ++ R +E+ P VANV L++FS
Sbjct: 35 CKARGKFRHTELTPMIGDYVEI-TIDK-NNKGAIEKIYDRKSELFRPAVANVTQALVVFS 92
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E + GY+ +F + +
Sbjct: 93 FKDPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEEYKDIIFMIEQAGYDIIFLNAK 152
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 153 EEKNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 190
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE ++
Sbjct: 191 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPEFRD 249
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+ +C F CLH EP C VK E RY +Y + L+EI R
Sbjct: 250 FI-----GECKFTGCLHHREPNCSVKKAVEEGHIHKNRYDFYIKTLEEIMNR 296
>gi|406980662|gb|EKE02235.1| hypothetical protein ACD_20C00410G0021 [uncultured bacterium]
Length = 357
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 182/376 (48%), Gaps = 60/376 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G+ C +R LKK K V VGD V + +++ + +I V +R+ I P +AN+D +
Sbjct: 19 GIIFECKIREKLKKEKAEVFVGDSVRLAEVNFDSNQAVITEVLERNNFIPRPSIANIDQI 78
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEP 139
+++ ++ QP+L+ L R+L A+ IP + +NK ++ + EE+ + S GY+
Sbjct: 79 IIVAALFQPELDLIQLNRYLAHAKLYNIPAIICINKADIENKEEIKSQIISIYEPLGYKI 138
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F S ++ +G++ + L ++ +V+ G SGVGKSSL+N L P L
Sbjct: 139 VFTSAKTGMGIEEFKRVLEEKRSVLCGTSGVGKSSLLNKLH----------------PGL 182
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLL--PL--SGGGYLADTPGFNQPSLLKVTKQS 255
K +VS K+ RG H TRH+ LL PL + +ADTPGF+ V
Sbjct: 183 SLK------TKQVSAKTLRGTHATRHIELLDIPLDENKMAVVADTPGFSYLKFDNVFPDV 236
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDWERYQYYFQLLDEI--- 307
+ F EIK N C F++CLHL E GC + K RY+ Y ++E
Sbjct: 237 INGLFEEIK-----NLSQDCYFSDCLHLSEDGCNILVNIDKIAPSRYESYRIFVNEALEY 291
Query: 308 ---------RIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQ- 357
++ E F +T T+ + V K+ + Q E + R+ ++++N
Sbjct: 292 KEKITYSGHKVEERF--KTLDTRNKSKV--KIVKINTQARE------QSRKTQKQKMNLI 341
Query: 358 SILDELDELDDDDNDD 373
SILD +++D+ D
Sbjct: 342 SILDNTYYNNEEDSQD 357
>gi|284047699|ref|YP_003398038.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
fermentans DSM 20731]
gi|283951920|gb|ADB46723.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
fermentans DSM 20731]
Length = 295
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 31/276 (11%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV C V+ +K+ + + GD+V ++ GMI V R + P VAN+D L
Sbjct: 23 GVLYTCKVKGRMKQKRFIMAAGDRV---ELEAQGAEGMIRQVLPRQNLLQRPLVANLDCL 79
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ +F+ P + + L AE+ GIP L LNK +L +++ ++S GY L
Sbjct: 80 MAVFACGDPDPSFLLVDKLLALAEAAGIPAALVLNKRDLAPAGLIDRFRSIYEPLGYPVL 139
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
LGL+ +L+R++ T GPSG GKS+L+N L +P L
Sbjct: 140 PVEAREGLGLEPILERVKGHTVAFGGPSGAGKSTLLNHL----------------DPSLT 183
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
K G VS+K GRG+HTTR LLP + GGY+ DTPGF L ++ A F
Sbjct: 184 LK------TGHVSSKIGRGRHTTRFAELLPFA-GGYIVDTPGFGNIDLSELQMDQAADGF 236
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296
EI++ + C F C H EP C VK ER
Sbjct: 237 REIRK-----QEGLCRFTGCTHTHEPDCEVKAAVER 267
>gi|427414316|ref|ZP_18904506.1| ribosome small subunit-dependent GTPase A [Veillonella ratti
ACS-216-V-Col6b]
gi|425714692|gb|EKU77695.1| ribosome small subunit-dependent GTPase A [Veillonella ratti
ACS-216-V-Col6b]
Length = 286
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 139/290 (47%), Gaps = 41/290 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR LK+ + +LVGD+V D G IE + R ++ P VAN+D ++L+ +
Sbjct: 26 CKVRGRLKQGRYSLLVGDRV------SFDPAGTIEAIMTRHNQLKRPHVANLDQVILVVA 79
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P + L + ++ E IPL L +NK +L DE + GY + S
Sbjct: 80 AHEPDINELLLNKLIIMIEHADIPLVLCINKCDLRDENT-ASLAEIYRQIGYTVIETSTR 138
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD L ++L + + GPSGVGKSSL+NA+ S F
Sbjct: 139 TGEGLDILREQLHHKVSAFAGPSGVGKSSLLNAIEPS---------------------FA 177
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
Q GEVS K RG+HTTRH SL L ++ DTPGF+ +++++ L +P E
Sbjct: 178 FQ-TGEVSDKIKRGRHTTRHASLYSLDEDSFIMDTPGFSAIDFSEISEERLPSLYP---E 233
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
L A + C F+ C H EP C VK RY+ Y + +EIR
Sbjct: 234 FLAAE--SGCKFSPCYHEHEPVCGVKDAVADGRIGTGRYESYLVIREEIR 281
>gi|300867358|ref|ZP_07112015.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
gi|300334664|emb|CBN57183.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
Length = 202
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+VVV DW RG I VF R TE+ PP+AN D +LL+
Sbjct: 60 LLCTRRSRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVFPRRTELNRPPIANADQILLV 119
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P LEP AL+RFLV+AESTG+ ++L+LNK +LV + W+ RL WGYEP+F S
Sbjct: 120 FALVEPDLEPIALSRFLVKAESTGLAVSLSLNKCDLVTPQQQEQWRDRLSNWGYEPVFIS 179
Query: 144 VESKLGL 150
V + +GL
Sbjct: 180 VHTGVGL 186
>gi|366166728|ref|ZP_09466483.1| ribosome small subunit-dependent GTPase A [Acetivibrio
cellulolyticus CD2]
Length = 295
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 29/272 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GDKV + + ++ G IE +F R ++++ P VANV+ + ++ +
Sbjct: 25 CKARGIFRKDSFTPLPGDKVSISVSNQDEKVGNIEEIFPRDSQLIRPAVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P+ + L + L+ E I + +NK++L D E N +S GY L S
Sbjct: 85 IKSPQPDFTLLDKLLITVEQKDISAVICINKIDLDKDMEYKNVAES-YQKAGYRVLALSS 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G D L L+D+TT G SGVGKS+++N + +D++
Sbjct: 144 AIETGFDELESALKDKTTAFAGQSGVGKSTILNRV-----------LDSYV--------- 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G+VS + RG+HTTRH L+ L GG++ DTPGF+ L + L +PE +
Sbjct: 184 --METGKVSDRIERGRHTTRHAELIELKSGGFVVDTPGFSSFELSGLEAGELQNFYPEFR 241
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296
+ +C F C+H+ EP C VK ER
Sbjct: 242 QYF-----GRCKFTGCMHISEPECEVKAALER 268
>gi|348026996|ref|YP_004766801.1| ribosome biogenesis GTPase RsgA [Megasphaera elsdenii DSM 20460]
gi|341823050|emb|CCC73974.1| putative ribosome biogenesis GTPase RsgA [Megasphaera elsdenii DSM
20460]
Length = 287
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 145/299 (48%), Gaps = 37/299 (12%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G E L R K +K ++LVGD++ + + +G+IE + R +I P VAN+D
Sbjct: 18 VGRENLVECRRRGKLLKAKILVGDELEITELGQ--DKGVIEALLPRRNQIRRPAVANIDQ 75
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
LL++ + P F + + L+ E GI TL NK +L D + +K+ GY+
Sbjct: 76 LLVIMAAQSPDPNRFLVDKMLMTCEYGGIHPTLCFNKCDL-DRDTAEAYKAFYERCGYDV 134
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S ++ GLD+L L + T GPSGVGKSSL++ L L
Sbjct: 135 YLVSAKTGEGLDTLRALLPHRMTAFAGPSGVGKSSLLSQL-------------------L 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G K D VG VS K RG+HTTRH ++ L Y+ DTPGF+ + + + +
Sbjct: 176 GRK---DLSVGAVSEKIKRGRHTTRHSEIMRLDSDTYVVDTPGFSALDFEHLDPREVLRL 232
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
FP +ML + C F++CLHL EP C VK ERY Y ++L I R+
Sbjct: 233 FP---DMLPYS--GGCKFSSCLHLSEPECTVKQAVADGHIQAERYDTYCKILTSIAERK 286
>gi|313677227|ref|YP_004055223.1| ribosome small subunit-dependent GTPase a [Marivirga tractuosa DSM
4126]
gi|312943925|gb|ADR23115.1| ribosome small subunit-dependent GTPase A [Marivirga tractuosa DSM
4126]
Length = 305
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 144/305 (47%), Gaps = 53/305 (17%)
Query: 26 CVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP-------- 73
C +R L+ K+ V VGD V + + D +I++V R I+
Sbjct: 25 CRLRGKLRLDDEKVTNPVAVGDWVNIAPEN--DTEAIIKDVLPRENYIIRKSTRKKKHSH 82
Query: 74 --VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR 131
AN+D +L+ ++ P+ + RFLV ES IP L NK +L+DEE L +++
Sbjct: 83 RLAANIDQAVLIVTLAFPRTSLGFIDRFLVSCESFRIPAVLVFNKADLLDEEGLEYYEAL 142
Query: 132 LHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ GY+ L S E +G++ L L +T++ G SGVGKS+L+N + SPH
Sbjct: 143 KFDYQELGYKVLLVSAEENIGMEELKAVLEGKTSLFAGHSGVGKSTLLNLI--SPHI--- 197
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
DQR+GEVS G+G HTT + G ++ DTPG + L
Sbjct: 198 -----------------DQRIGEVSESVGKGVHTTTFAEMFEAWEGAFVIDTPGIKELGL 240
Query: 249 LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYF 301
+ + L+ FPE++E + +C FNNC H EPGC + E RY+ Y
Sbjct: 241 WDIGNEELSHYFPEMREYI-----GECKFNNCTHTHEPGCAFREAMEEGKIAPSRYESYL 295
Query: 302 QLLDE 306
+L++
Sbjct: 296 SILED 300
>gi|219849209|ref|YP_002463642.1| ribosome small subunit-dependent GTPase A [Chloroflexus aggregans
DSM 9485]
gi|219543468|gb|ACL25206.1| ribosome small subunit-dependent GTPase A [Chloroflexus aggregans
DSM 9485]
Length = 319
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 152/306 (49%), Gaps = 53/306 (17%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
L C +R LKK ++ V++GD+V V + + +G IE V R +++
Sbjct: 38 LECRLRGRLKKERQATDLVVIGDQVEVVLVGY--GQGAIEAVLPRRSQLARRAAGSRGAY 95
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D VANVD +LL+F+ +P+ P L R+LV E + +P + K++LV EV +
Sbjct: 96 KEDVIVANVDQVLLVFACAKPEFTPRMLDRYLVICEHSELPAIIVATKIDLVGREVAESL 155
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GY ++ S+ S G+ L RL + +V+ G SGVGKSSL+NA+
Sbjct: 156 FRPYEQIGYPVVYTSIISGEGIADLRDRLIGKISVVTGKSGVGKSSLLNAI--------- 206
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLADTPGFNQP 246
+P L + R GEVS + +G+HTT L+PL+ GGGY+ADTPG +
Sbjct: 207 -------QPGL------NLRTGEVSERLTKGRHTTTVAELIPLTMPGGGYVADTPGIREI 253
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQY 299
L K+ + LA F E + L+ C F C HL EP C V+ ERY
Sbjct: 254 GLWKLPARDLAWCFREFRPFLR-----DCYFAGCTHLHEPDCAVRAAVERGEITPERYDS 308
Query: 300 YFQLLD 305
Y +L++
Sbjct: 309 YVRLMN 314
>gi|422419435|ref|ZP_16496390.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
gi|422422523|ref|ZP_16499476.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
gi|313632751|gb|EFR99719.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
gi|313637328|gb|EFS02813.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
Length = 291
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L + A
Sbjct: 143 NEEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNNDLTLKTA-------------- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 187 --------EISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C F C+H EP C VK E RYQ+Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYQHYIQILQELKNRK 288
>gi|160903336|ref|YP_001568917.1| ribosome small subunit-dependent GTPase A [Petrotoga mobilis SJ95]
gi|160360980|gb|ABX32594.1| ribosome small subunit-dependent GTPase A [Petrotoga mobilis SJ95]
Length = 300
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 145/293 (49%), Gaps = 40/293 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + K K R +VGD V S D + G IEN+ +R E+ P VAN+D L+L+ S
Sbjct: 29 CFLPGRFKLQKIRPIVGDYVEY-SKDQQNAYGRIENILERKNELYRPRVANLDQLVLVTS 87
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV--DEEVLNTWKSRLHTWG--YEPLF 141
+ +P+++ + + +V AE + + + LNK +L+ DEE + + +G Y +
Sbjct: 88 IKEPRVDLIVVDKIIVLAEKEKLDVVIVLNKTDLLGSDEEK-REMERFIEIYGKIYPVIP 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +K LD L L+++ + GPSGVGKSSL+N L +P L
Sbjct: 147 TSKITKNNLDILKSYLKNKVSTFAGPSGVGKSSLLNVL----------------DPKL-- 188
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R GE+S K GRGKHTT + LL GGY+ DTPGF+ L + K + + F
Sbjct: 189 ----KLREGEISKKLGRGKHTTTYAELLYFDFGGYIVDTPGFSSLELRGIKKDEVRRYFR 244
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E E C F+NC H EPGC +K E RY Y Q+ +EI
Sbjct: 245 EFLEF-----DGFCQFSNCSHTVEPGCAIKEAVENGQISLSRYTNYCQIYEEI 292
>gi|167757022|ref|ZP_02429149.1| hypothetical protein CLORAM_02571 [Clostridium ramosum DSM 1402]
gi|237735908|ref|ZP_04566389.1| ribosome-associated GTPase [Mollicutes bacterium D7]
gi|365830320|ref|ZP_09371902.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
3_3_56FAA]
gi|374626099|ref|ZP_09698513.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
8_2_54BFAA]
gi|167703197|gb|EDS17776.1| ribosome small subunit-dependent GTPase A [Clostridium ramosum DSM
1402]
gi|229381653|gb|EEO31744.1| ribosome-associated GTPase [Coprobacillus sp. D7]
gi|365263501|gb|EHM93331.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
3_3_56FAA]
gi|373914625|gb|EHQ46440.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
8_2_54BFAA]
Length = 291
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 146/304 (48%), Gaps = 47/304 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
C R +K + + LVGD V V G D G + NV R ++ PP+ NVD L+
Sbjct: 25 CRARGKFRKDEIKPLVGDFVEYEVEG-----DNDGYVMNVLPRHNCLVRPPICNVDQALI 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ S +P L +FL+ E GI + ++K++L ++E + + GY
Sbjct: 80 VSSCKEPDFSSILLDKFLLVIEHLGIEPIIIISKMDLDEDESVKQYVKDYRQAGYRVYEI 139
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + GL+ L +D+ +VI G SGVGKSS +NAL D++ E
Sbjct: 140 SSKDNHGLEELKTVFKDKVSVITGQSGVGKSSFLNAL----------DINLKLE------ 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV LL + GGYL DTPGF+ L++T + LA + +
Sbjct: 184 ------TNEISKSLGRGKHTTRHVELLKMY-GGYLGDTPGFSSLE-LEMTPEELAVAYHD 235
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEFQL 315
A +C F CLH EP C VK ERY++Y L +++ +EE
Sbjct: 236 F-----AQFSHECKFRGCLHDSEPNCGVKKAVEDGKISKERYEHYLMNLQDVKKKEE--- 287
Query: 316 RTFG 319
R +G
Sbjct: 288 RKYG 291
>gi|335049787|ref|ZP_08542773.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
199-6]
gi|333762282|gb|EGL39786.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
199-6]
Length = 285
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 39/287 (13%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD +++ ID +G+IE V R E+ P VANVD ++++ + PKL
Sbjct: 30 KVKTKILVGDMLMITPID--TSKGVIEQVLARKNELRRPAVANVDQIMVVMTPAVPKLNY 87
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESKLGLDS 152
L + L LNK EL + W ++ + GYE S + G+ +
Sbjct: 88 RLTDTLLASCMYQHLTPILLLNKCEL--NPRMTQWYTKYYRQCGYEVYAVSAYTGAGIGA 145
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+ RL + TV GPSGVGKSSL+ + ED +G V
Sbjct: 146 VTARLDGKMTVFSGPSGVGKSSLLARITGR----------------------EDLHIGAV 183
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272
S K RG+HTTRH ++PL Y+ DTPGF+ +L+ + + FPE L
Sbjct: 184 SKKIQRGRHTTRHAEIIPLREQTYVVDTPGFSAVALVSAAPEEIQNLFPEFVPYL----- 238
Query: 273 AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+C F+ C H+ EP C +K + RY+ Y QL E + R++
Sbjct: 239 GRCRFSPCAHMAEPDCRIKEAVKDGHIFRARYESYCQLFQEAKERKK 285
>gi|312898696|ref|ZP_07758086.1| ribosome small subunit-dependent GTPase A [Megasphaera
micronuciformis F0359]
gi|310620615|gb|EFQ04185.1| ribosome small subunit-dependent GTPase A [Megasphaera
micronuciformis F0359]
Length = 284
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 38/285 (13%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KIK ++ VGDK+ + D +G+IE + R + P +ANVD ++++ + P
Sbjct: 31 KIKEKIFVGDKLEFTATDA--GKGIIEKILPRFNLLKRPTIANVDAMVIVMAAASPDPNK 88
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
+ + L+ E G+ L NK +L ++ + + + GY S + GLD L
Sbjct: 89 TLVDKMLMTCEHGGLTPVLCFNKCDL-SKDTGHEYAAYYRQCGYTVYLVSAATGTGLDEL 147
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
Q L + T GPSGVGKSSL+ A+ ++ VGEVS
Sbjct: 148 KQGLSGKVTAFAGPSGVGKSSLLTAIAG-----------------------KELHVGEVS 184
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
K GRG+HTTRH ++ + Y+ DTPGF+ + +++A P+I++
Sbjct: 185 RKIGRGRHTTRHSEIIRVDNNTYVIDTPGFSALDFAHMEAKAIAALMPDIRKF-----AP 239
Query: 274 KCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
C F +CLH EP C VK ERY+ Y ++LDE+ R+
Sbjct: 240 HCRFASCLHRAEPDCAVKQAVADGLIAPERYETYCKILDELSERK 284
>gi|335047550|ref|ZP_08540571.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333761358|gb|EGL38913.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 291
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 144/297 (48%), Gaps = 41/297 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
KTG + R + +K K +VGD V + + D I VF R EIL PPV NVD
Sbjct: 20 KTG-RYMSKARGVFRKQKFTPMVGDNVKIEI--FADNTACIVEVFDRKNEILRPPVVNVD 76
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++FS+ P++ + R+++ E IP+ L LNK +L+D+E +++ GY+
Sbjct: 77 QAIIVFSLKDPEISYKIIDRYIMYYEVMKIPIILCLNKCDLIDKETEINFRNIYDKLGYK 136
Query: 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F S+ L L + + +D+ +VI G SGVGKS+++N L D + W
Sbjct: 137 IIFNSIS--LDNRKLFEEICKDKISVITGASGVGKSTILNFLN--------PDYNIW--- 183
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VG++S K+ RGKHTTR +L ++ DT GF L K +
Sbjct: 184 -----------VGDISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTKFIDSEV- 231
Query: 258 QTFPEIKEMLKANE-PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+I++ E +KC F++C H+ EP C VK E RY Y L+E
Sbjct: 232 ----QIRDAFVEFEFGSKCKFSDCKHINEPDCYVKSKLESRSISKSRYDSYIFYLNE 284
>gi|239618305|ref|YP_002941627.1| ribosome small subunit-dependent GTPase A [Kosmotoga olearia TBF
19.5.1]
gi|239507136|gb|ACR80623.1| ribosome small subunit-dependent GTPase A [Kosmotoga olearia TBF
19.5.1]
Length = 303
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 42/308 (13%)
Query: 11 SRTSDCND-KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
SRT D T +C + K R +VGD ++ I+ + G +EN+ R E+
Sbjct: 15 SRTMVVADLHTKKRYICNMPGRFKLQGIRPIVGD--IIEFIETTESMGRVENILPRRNEL 72
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P +AN+D ++L+ + +P + + + RFLV AE +G+P + +NK +L+ + K
Sbjct: 73 LRPRIANIDQIILVTCLKEPTVPLYIVDRFLVLAEHSGLPTVIVVNKTDLLTSR--DPLK 130
Query: 130 SRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
H +G Y L S + +D L + + + + + G SGVGKSSL+NA+ +P S
Sbjct: 131 KFYHIYGEYYNILEVSAKEGTNIDLLKEIFKGKVSAMAGMSGVGKSSLLNAI--NPGLS- 187
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
+ E+ST+ RGKHTT + LL GGY+ADTPGF
Sbjct: 188 -------------------LKTSEISTRLDRGKHTTTYSELLEFDFGGYVADTPGFASLE 228
Query: 248 L-LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD--WERYQY 299
L + Q L F +I + C+F+NC+H+ EPGC +K GD RY+
Sbjct: 229 LPYDMEPQELQNFFRDI-----SAHKGMCAFSNCVHVEEPGCYIKELVETGDIPMSRYES 283
Query: 300 YFQLLDEI 307
Y ++ +E+
Sbjct: 284 YLKMYNEL 291
>gi|430750389|ref|YP_007213297.1| ribosome small subunit-dependent GTPase A [Thermobacillus composti
KWC4]
gi|430734354|gb|AGA58299.1| ribosome small subunit-dependent GTPase A [Thermobacillus composti
KWC4]
Length = 304
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 139/295 (47%), Gaps = 43/295 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V I + G ++ + RS+ ++ PPVAN++ +++FS
Sbjct: 31 CRARGIFKKRGESPLVGDRVDYTEIGGGE--GTVDRIHPRSSVLIRPPVANIELAVVVFS 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTW---GYE 138
+ +P L L +FL E GI + L K +L+D EE +++ + GY
Sbjct: 89 VAEPALNLQLLDKFLAFIEHAGIDAVICLTKRDLIDGPDGEEAREAFEAVQRIYPPIGYR 148
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ + G+D L + L + +V+ G SGVGKSSL+NA +
Sbjct: 149 TIATCARTGEGVDELREVLGGRLSVVCGQSGVGKSSLLNA------------------AV 190
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
G K +S K GRG+HTTRH L+P+ GGY+ADTPGF+Q ++ L
Sbjct: 191 PGLKL----ETNAISEKLGRGRHTTRHTELVPVGRGGYVADTPGFSQLDFGELQDADLGS 246
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDE 306
F E +E+ +C F C H+ EPGC V RY Y L E
Sbjct: 247 CFREFRELAP-----ECKFRGCTHVHEPGCAVTAALAEGRIAQSRYDSYTAFLAE 296
>gi|386714215|ref|YP_006180538.1| ribosome-associated GTPase [Halobacillus halophilus DSM 2266]
gi|384073771|emb|CCG45264.1| ribosome-associated GTPase [Halobacillus halophilus DSM 2266]
Length = 293
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 143/296 (48%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V + G I ++ +R E + PP+ANVD L++ S
Sbjct: 25 CRGRGNFRKKKVSPLVGDTVEFKA--EKQDEGYILSIDKRKNEFVRPPIANVDQALIVTS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN---TWKSRLHTWGYEPLFC 142
P+ L RFLV E+ I + ++K++ +DE N ++ + GY +
Sbjct: 83 AANPEFNALLLDRFLVLVEAKRIEPFVVISKMDQLDEGRANDMKVYQQMYESVGYPVILS 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+V ++ + L +TTVI G SGVGKSSL+N + P S D
Sbjct: 143 AVNDAESMEQIRAHLAGRTTVIAGQSGVGKSSLLNTI--DPRLSIDTD------------ 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L +S GG +ADTPGF+ + + L + FPE
Sbjct: 189 --------EISKSLGRGKHTTRHVELYEIS-GGLVADTPGFSSLEFGDLQLEQLPECFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDW--ERYQYYFQLLDEIRIRE 311
++ C F CLH EP C VK GD +RY++Y Q L+EI+ R+
Sbjct: 240 FVQVQD-----DCKFRGCLHNKEPKCAVKHGVEEGDISKQRYEHYLQFLEEIQNRK 290
>gi|306820533|ref|ZP_07454166.1| ribosome small subunit-dependent GTPase A [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551447|gb|EFM39405.1| ribosome small subunit-dependent GTPase A [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 293
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 42/298 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R KK + ++VGD V + D +D +I+ V+++ ++ P VAN+ L+L+FS
Sbjct: 21 CKPRGTFKKENKSIIVGDYVDITITDEIDNEAVIDFVYEQKNMLIRPSVANITKLILVFS 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +PKL + + FLV A+ I + +K +L DE+ ++K + + GYE +
Sbjct: 81 VMEPKLNLYIIDSFLVVAKKNNIDAVICFSKTDL-DED--QSYKEAVKIYKDIGYETVEI 137
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G++ L ++ V+ GPSG GKSSLIN L + +
Sbjct: 138 SSVNNIGIEELKSKISGNINVVAGPSGAGKSSLINELSAEFN------------------ 179
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q + +STK +GK+TT + +LL + Y+ADTPGF + L F
Sbjct: 180 ----QAISSISTKLQKGKNTTTYATLLKMPMKDSYIADTPGFTSIKATDIKINELKDYFV 235
Query: 262 EIKEMLKANEPAKCSF-NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E + N C F N CLH EP C VK E RY Y ++L EI+ E
Sbjct: 236 EFE-----NYSEGCKFKNKCLHDNEPSCSVKKALEEGKIYKSRYDSYIRMLSEIKKYE 288
>gi|407796650|ref|ZP_11143603.1| GTPase RsgA [Salimicrobium sp. MJ3]
gi|407019166|gb|EKE31885.1| GTPase RsgA [Salimicrobium sp. MJ3]
Length = 288
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 145/294 (49%), Gaps = 41/294 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L + K LVGD V + + + +V +RS E++ PP+AN+D +++ S
Sbjct: 25 CRGRGLFRNKKISPLVGDVV-----QFDPEQRYLLSVEERSNELIRPPIANIDQAIVVVS 79
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSV 144
+PK L RFLV E+ I + ++K + V E + ++ GYE +
Sbjct: 80 AVEPKFNSRLLDRFLVLIEAKMINPVIVISKQDRVTASEDIAKYRRIYEQAGYEVILTDP 139
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ L + + +TTVI G SGVGKS+L+NAL+S S +
Sbjct: 140 GNEEALIRVKDLFKSKTTVIAGQSGVGKSTLLNALQS-------------------SLFL 180
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
E GE+S GRGKHTTR V L ++ GG +ADTPGF+ VT SLA+ FPEI+
Sbjct: 181 E---TGEISRSLGRGKHTTRRVELFSIN-GGLVADTPGFSSLDFDPVTSVSLAECFPEIR 236
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E C F C+H EP C VK E RY +Y + L EI+ R+
Sbjct: 237 EY-----APDCKFRGCIHDREPKCAVKQAVEDGNIHEFRYDHYIEFLHEIQNRK 285
>gi|417003269|ref|ZP_11942340.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478745|gb|EGC81856.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 290
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 143/297 (48%), Gaps = 40/297 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L+C R +K + LVGD V++ + D G I + QRS EI P +ANVD +LL
Sbjct: 23 LMCKARGNFRKKGIKPLVGDNVLIEYLS--DGEGYITQICQRSNEIKRPNIANVDQILLF 80
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ P L + L ++L E GI + + L+K++L D++ ++ + GY+ L
Sbjct: 81 ATIKNPPLNLYNLDKYLAMCEYIGIDVCMILSKIDLADQKEIDDFVKIYEPIGYKILCLD 140
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
D ++ L+ +T+ + G SGVGKS+ N L D+
Sbjct: 141 NYDDFPEDEIMSVLKGKTSAVSGASGVGKSTFSNNL---------VDI------------ 179
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPE 262
+ +G +S KS RGK+TTRH + ++ +L DTPGF+ + + + L TF E
Sbjct: 180 --NVEIGSISDKSKRGKNTTRHTEIFKINENTFLFDTPGFDSFDIDFIEDEVELKDTFLE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F +C H+ EP C VK D + RY+ Y L +EI+ R E
Sbjct: 238 FRD-------KTCKFKDCNHINEPKCGVKEDLKNGEISESRYKNYLMLFEEIKKRRE 287
>gi|262066608|ref|ZP_06026220.1| ribosome small subunit-dependent GTPase A [Fusobacterium
periodonticum ATCC 33693]
gi|291379672|gb|EFE87190.1| ribosome small subunit-dependent GTPase A [Fusobacterium
periodonticum ATCC 33693]
Length = 267
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 47/291 (16%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + I +FQR ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFQRDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIVNKIDYLSEEELTELKERLAHLKSIGVPSFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQDNVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
E + C F NC H+ EP C VK E RY +Y + L+
Sbjct: 213 EFTNI------ESCKFLNCSHIHEPNCNVKKAVEENKISQDRYNFYKKTLE 257
>gi|408356905|ref|YP_006845436.1| ribosome biogenesis GTPase RsgA [Amphibacillus xylanus NBRC 15112]
gi|407727676|dbj|BAM47674.1| putative ribosome biogenesis GTPase RsgA [Amphibacillus xylanus
NBRC 15112]
Length = 293
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 138/301 (45%), Gaps = 40/301 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV C R L +K K LVGD V + + D G + + R E++ PPVAN+D
Sbjct: 20 GVTYQCKARGLFRKTKETPLVGDFVKFEADNLTD--GYVTELLPRKNELVRPPVANIDQA 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGY 137
L+ S +P+ L RFLV E I + + K++L+DE LN + GY
Sbjct: 78 LIAVSAKEPEFSAKLLDRFLVLVEFNHIDAIILVTKMDLLDENERPKLNQYIQDYQQLGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ S E + + Q L +T+VI G SGVGKSS +N L+ A
Sbjct: 138 QVEQLSTEWPVQHEVFTQLLEGKTSVIAGQSGVGKSSFLNLLKPELKIETA--------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
E+S GRG+HTTRH L+ + GG +ADTPGF+ ++ + L
Sbjct: 189 -------------EISQSLGRGRHTTRHTELIHVY-GGMIADTPGFSSLDFDQIELEQLP 234
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F + + + C F C+H+ EP C VK E RYQ+Y + EI+ R
Sbjct: 235 FCFRDFESYRE-----DCKFRGCMHVNEPNCAVKKAVEQHDISEYRYQHYLEFYHEIKSR 289
Query: 311 E 311
+
Sbjct: 290 K 290
>gi|342218700|ref|ZP_08711306.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
135-E]
gi|341589076|gb|EGS32442.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
135-E]
Length = 294
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 138/289 (47%), Gaps = 42/289 (14%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD+V V + D +G+IE V R E+ P VAN+D ++++ + P +
Sbjct: 38 KVKHKILVGDEVEVMATD--HGKGLIEAVLPRQNELRRPAVANIDQIVMVLAAQSPDPDY 95
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
F + L+ I L +NK EL EV + GY+ L S + G+D L
Sbjct: 96 FLTDKLLLTCAYHHISPLLCMNKSEL-QREVAQAYCQHYTQCGYKTLAVSAHTGEGIDLL 154
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
L+ + T GPSGVGKSSL+ L A+ G VS
Sbjct: 155 RSYLQGKITAFSGPSGVGKSSLLTLLLGKELAT-----------------------GAVS 191
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL--LKVTKQSLAQTFPEIKEMLKANE 271
K RG+HTTRH +L + Y+ DTPGF L LKV K LA FPE K +
Sbjct: 192 EKIRRGRHTTRHAEMLCMDAHTYVVDTPGFAAIELEPLKVAK--LALLFPEFKPYV---- 245
Query: 272 PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
+C F +C+H+ EP C +K E RY Y +LL EI+ R+ F
Sbjct: 246 -GQCRFPSCVHVHEPDCAIKEAKERGEISETRYMTYCKLLHEIKERKSF 293
>gi|373106187|ref|ZP_09520490.1| ribosome small subunit-dependent GTPase A [Stomatobaculum longum]
gi|371652562|gb|EHO17970.1| ribosome small subunit-dependent GTPase A [Stomatobaculum longum]
Length = 289
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 139/303 (45%), Gaps = 36/303 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G L C R L +K + LVGD V + + I + R ++ P V+NV
Sbjct: 16 DCGGEVLTCKARGLFRKRGEKPLVGDLAEVEAAQTSESEANIVTLLPRKNRLIRPAVSNV 75
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D L++ ++ P + + L ++LV E IP + K +L D L ++SR T GY
Sbjct: 76 DQALVVMAVRTPDPQFYLLDQYLVTMELQEIPAAILFTKEDL-DRGELADYRSRYETAGY 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
S E+ GL++L L +TTV+ GPSGVGKS+L N L P A
Sbjct: 135 PVFSVSAENGSGLEALRAYLAGKTTVLAGPSGVGKSTLTNLL--CPAA------------ 180
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GE+S K+ RGK TTRH L L YL DTPGF + T ++
Sbjct: 181 --------NMETGELSRKNLRGKQTTRHTELFCLGENSYLLDTPGFTAVEVWGDT-EAFK 231
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310
Q FPEI+ + +C F C H EP C VK RY+ Y ++ +E R
Sbjct: 232 QAFPEIRAL-----EGQCRFTGCNHGAEPDCAVKAAVARGEIAASRYESYRKMAEESAER 286
Query: 311 EEF 313
++
Sbjct: 287 RKY 289
>gi|340753764|ref|ZP_08690538.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 2_1_31]
gi|422317087|ref|ZP_16398454.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium
periodonticum D10]
gi|229423318|gb|EEO38365.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 2_1_31]
gi|404590239|gb|EKA92693.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium
periodonticum D10]
Length = 267
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 47/291 (16%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + I +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRV------EISEDNAIVEIFERDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIINKIDYLSEEELTELKERLAHLKSIGVPTFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQENVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
E + C F NC H+ EP C VK E RY +Y + L+
Sbjct: 213 EFSNI------DSCKFLNCSHIHEPNCNVKKAVEENRISQDRYNFYKKTLE 257
>gi|294783162|ref|ZP_06748486.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
1_1_41FAA]
gi|294480040|gb|EFG27817.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
1_1_41FAA]
Length = 267
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 47/291 (16%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + I +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRV------EISEDNAIVEIFERENMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIVNKIDYLSEEELTELKERLAHLKSIGVPTFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQENIGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
E + C F NC H+ EP C VK E RY +Y + L+
Sbjct: 213 EFTNI------DSCKFLNCSHIHEPNCNVKKAVEENKISQDRYNFYKKTLE 257
>gi|222099879|ref|YP_002534447.1| GTPase engC [Thermotoga neapolitana DSM 4359]
gi|254766841|sp|B9K7Z8.1|RSGA_THENN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|221572269|gb|ACM23081.1| GTPase engC [Thermotoga neapolitana DSM 4359]
Length = 295
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 154/320 (48%), Gaps = 50/320 (15%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV-----VGSIDWVDRR 56
R IV + + +++TG LLC +R + ++ VGD+V GS
Sbjct: 6 RGIVLSFHSNMVTVEDEETGERLLCKLRGKFRLQNLKIYVGDRVEYTPDGTGS------- 58
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G+IENV R ++ P VANVD +L+ ++ P+ + + +FLV E + L +NK
Sbjct: 59 GVIENVLHRKNLLVKPHVANVDQAILVVTVKMPETSTYIIDKFLVLTEKNELETVLVINK 118
Query: 117 VELVDEEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
+++ DEE L K R+++ Y + S ++ +G++ L + L+ + + + G SGVGKSS
Sbjct: 119 MDIYDEEDLEKVKELERIYSKLYPIVKTSAKTGMGIEELKKYLKGKISTMAGLSGVGKSS 178
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
L+NA+ G K RV EVS K RG+HTT LL G
Sbjct: 179 LLNAINP------------------GLKL----RVSEVSQKLQRGRHTTTSAQLLRFDFG 216
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294
GY+ DTPGF + + + L F E E +C F++C H+ EP C VK
Sbjct: 217 GYVVDTPGFANLEIGDIEPEELKYYFKEFNE-------KQCFFSDCNHIDEPECGVKEAV 269
Query: 295 E-------RYQYYFQLLDEI 307
E RY+ Y ++ E+
Sbjct: 270 ENGEIAESRYENYVKMFHEL 289
>gi|167747877|ref|ZP_02420004.1| hypothetical protein ANACAC_02606 [Anaerostipes caccae DSM 14662]
gi|167652699|gb|EDR96828.1| ribosome small subunit-dependent GTPase A [Anaerostipes caccae DSM
14662]
Length = 291
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 20 TGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG L C + + + K + LVGD + +D + G + + R+ E++ P V+N+D
Sbjct: 17 TGTGLYECKAKGIFRNRKMKPLVGDMAEIEVLDEEKKLGNLTELLPRTNELIRPAVSNID 76
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
L++F+ PK L RFL+ E G+P + NK +L E+ L+ G+
Sbjct: 77 QALVIFAAKNPKPNYNLLDRFLLMMEKQGVPAVVCFNKTDLAKEKELSVLMDVYKDCGHR 136
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+F SV + GL + + + +TTV+ GPSGVGKSS++N L P A
Sbjct: 137 VIFTSVSGETGLSEIREAVDHKTTVLAGPSGVGKSSMMNLL--YPDA------------- 181
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ G VS K RGKHTTRH L+ + ++ DTPGF+ + +
Sbjct: 182 -------NMETGAVSEKIQRGKHTTRHSELIRVGEDTFVMDTPGFSSLFVDMFEED---- 230
Query: 259 TFPEIKEMLKANEP--AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
EIK K EP +C F C H EPGC VK + RY Y + +E++
Sbjct: 231 ---EIKYYFKEFEPYEGQCRFQGCSHTHEPGCGVKQALDEGKISKTRYDNYVLIYNELK 286
>gi|402310148|ref|ZP_10829116.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. AS15]
gi|400369390|gb|EJP22390.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. AS15]
Length = 293
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 42/298 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R KK + ++VGD V + D +D +I+ V+++ ++ P VAN+ L+L+FS
Sbjct: 21 CKPRGTFKKENKSIIVGDYVDITITDEIDNEAVIDFVYEQKNMLIRPSVANITKLILVFS 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +PKL + + FLV A+ I + +K +L DE+ ++K + + GY+ +
Sbjct: 81 VMEPKLNLYIIDSFLVVAKKNNIDAVICFSKTDL-DED--QSYKEAVKIYKDIGYKTVEI 137
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G++ L ++ V+ GPSG GKSSLIN L + +
Sbjct: 138 SSVNNIGIEELKSKISGNINVVAGPSGAGKSSLINELSAEFN------------------ 179
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q + +STK +GK+TT + +LL + Y+ADTPGF + L F
Sbjct: 180 ----QAISSISTKLQKGKNTTTYATLLKMPMKDSYIADTPGFTSIKATDIKINELKDYFV 235
Query: 262 EIKEMLKANEPAKCSF-NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
E + N C F N CLH EP C VK E RY Y ++L EI+ E
Sbjct: 236 EFE-----NYSEGCKFKNKCLHDNEPSCSVKKALEEGKIYKSRYDSYIRMLSEIKKYE 288
>gi|365925222|ref|ZP_09447985.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266580|ref|ZP_14769038.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425160|gb|EJE98176.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 291
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 148/280 (52%), Gaps = 46/280 (16%)
Query: 42 GDKVVVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFA 95
G+ +VG DWV+ + G I + +R E++ PPVAN+D+ +++ + +PK
Sbjct: 35 GEAPLVG--DWVEFKADNQNEGYILRIEKRKNELIRPPVANIDYAIVVTACKEPKFSSNL 92
Query: 96 LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESKLGLDSLL 154
L R LV E I L +KV+L+ EE K + Y+ ++ C + S + +L
Sbjct: 93 LDRQLVMLEKNQITPLLFFSKVDLLTEEEFLEIKQVVAD--YQKIYDCQLGSLDSVVALT 150
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
++ + +T V++G +G GKS+L+N L +P L GEVS
Sbjct: 151 EKFQQKTVVVMGQTGAGKSTLLNNL----------------QPKL------KLETGEVSK 188
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274
RGKHTTR V+LLP++ G +ADTPGF+ LL++ K+ LA+ FP+ + N A
Sbjct: 189 ALSRGKHTTRKVTLLPIN-GNLIADTPGFSSFDLLEIKKEELAKYFPDFQ-----NYAAG 242
Query: 275 CSFNNCLHLGEPGC-----VVKGDWE--RYQYYFQLLDEI 307
C F +C+HL EPGC V KG+ + RY+ Y Q +EI
Sbjct: 243 CKFRSCIHLNEPGCKVKEAVKKGEIKSSRYENYQQFQEEI 282
>gi|168188133|ref|ZP_02622768.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum C
str. Eklund]
gi|169294033|gb|EDS76166.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum C
str. Eklund]
Length = 290
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 37/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K +VGD+V++ D D G IE + +R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRNKKLTPMVGDRVIITPND--DNYGAIEEISKRENYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL++ E I + NK++L + + + GYE +F +
Sbjct: 82 LKNPDVNLDLLNKFLIQCELKNIKSIVCFNKIDLCADYKNHEAVKMVSDAGYEYIFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ L+ L +L+ V GPSGVGKS+++N L +G + E
Sbjct: 142 EEDELEELRGKLKGNINVFCGPSGVGKSTILNKL-------------------VGKEVME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S + RGKHTTRH L+ ++ G++ DTPGF+ L +K+ L FPE +
Sbjct: 183 ---TGIISERLKRGKHTTRHSELVEVN-NGFIVDTPGFSTLDLKFDSKEELKDYFPEFND 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+C FN CLH EP C VK + +RY++Y + L+EI
Sbjct: 239 Y-----ENQCKFNGCLHYKEPKCSVKDAVDNKEINKDRYEFYIKNLEEI 282
>gi|358467882|ref|ZP_09177547.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. oral
taxon 370 str. F0437]
gi|357066556|gb|EHI76705.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. oral
taxon 370 str. F0437]
Length = 267
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 47/291 (16%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + I +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFKRDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIINKIDYLSEEELTELKERLAHLKSIGVPSFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E IL
Sbjct: 115 SCQENVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERIL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEIPKIENREELISLFP 212
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
E + C F NC H+ EP C VK E RY +Y + L+
Sbjct: 213 EFTNI------DSCKFLNCSHVHEPDCNVKKAVEENKISQDRYNFYKKTLE 257
>gi|385799664|ref|YP_005836068.1| ribosome small subunit-dependent GTPase A [Halanaerobium praevalens
DSM 2228]
gi|309389028|gb|ADO76908.1| ribosome small subunit-dependent GTPase A [Halanaerobium praevalens
DSM 2228]
Length = 286
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 144/303 (47%), Gaps = 45/303 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C +R KI+ ++ GD V ++ M+E R+ + P VAN+
Sbjct: 17 DQKGEVYRCRIRG---KIQEKIYPGDHV-----EFDKENKMLEGYHARNNLLQRPKVANI 68
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++++ S+ P P L RFL+ ES+G + +NK++ D + GY
Sbjct: 69 DQVVIMHSVKNPDFAPALLDRFLLLVESSGFEPLIVINKIDKADPGFKENF-VEYQKAGY 127
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F SV+ L L ++L+++ V+ GPSG GKSS +N + + AA
Sbjct: 128 NLIFISVKEAKNLTKLFEQLKNKINVLTGPSGAGKSSFLNQVLEDTNLRTAA-------- 179
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL--LKVTKQS 255
+S K +G HTTR V LL L G++ADTPGF+ L++ +
Sbjct: 180 --------------ISKKLKKGVHTTRMVELLALPSNGWVADTPGFSSIKKLNLEIEADN 225
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
L+ FPEI A C FN C HL EPGC+V+ + RYQ Y Q+ +E++
Sbjct: 226 LSWYFPEI-----AKYNNSCKFNGCSHLHEPGCLVQQKVKAGEIAERRYQSYQQIYNELK 280
Query: 309 IRE 311
+E
Sbjct: 281 EKE 283
>gi|218132882|ref|ZP_03461686.1| hypothetical protein BACPEC_00743 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991755|gb|EEC57759.1| ribosome small subunit-dependent GTPase A [[Bacteroides]
pectinophilus ATCC 43243]
Length = 293
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 35/296 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +L+ K + LVGD V + +D G I +V R ++ P VANVD L++F+
Sbjct: 25 CKAKGILRNRKIKPLVGDNVDIDILDDEKFLGNINDVLPRKNSLIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RF+V E I + +K +L + L G F S
Sbjct: 85 VHRPAPNYNLLDRFIVMMEKHDIETVICFSKKDLAKDSQLAQMADIYAGCGCRVHFISTV 144
Query: 146 SKLGLDSLLQR-LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+K G+D +++ + +TTV GPSGVGKSSL N L S
Sbjct: 145 NKEGIDDIIRPIIAGKTTVFAGPSGVGKSSLTNELLSQSR-------------------- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G VS K GRG+HTTRH ++ + G Y+ DTPGF + + Q L F E
Sbjct: 185 --METGAVSEKIGRGRHTTRHSEIINIGGDTYIMDTPGFTSFYVSDIEAQDLRFYFEEF- 241
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
A +C FN C+H+ EP C VK + RY+ Y ++ +E++ + ++
Sbjct: 242 ----APYEGRCRFNGCVHVNEPDCAVKQAIDDGIISRIRYENYVEIYNELKDQRKY 293
>gi|160947224|ref|ZP_02094391.1| hypothetical protein PEPMIC_01157 [Parvimonas micra ATCC 33270]
gi|158446358|gb|EDP23353.1| ribosome small subunit-dependent GTPase A [Parvimonas micra ATCC
33270]
Length = 302
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 41/297 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
KTG + R + +K K +VGD V + + D I VF R +IL PPV NVD
Sbjct: 31 KTG-RYMSKARGVFRKQKFTPMVGDNVKIEI--FADNTACIVEVFDRKNKILRPPVVNVD 87
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++FS+ P++ + R+++ E IP+ L LNK +L+D+E +++ GY+
Sbjct: 88 QAIIVFSLKDPEISYKIIDRYIMYYEVMKIPIILCLNKCDLIDKETEINFRNIYDKLGYK 147
Query: 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F S+ L L + + +D+ +VI G SGVGKS+++N L D + W
Sbjct: 148 IIFNSIS--LDNRKLFEDICKDKISVITGASGVGKSTILNFLN--------PDYNIW--- 194
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VG++S K+ RGKHTTR +L ++ DT GF L K +
Sbjct: 195 -----------VGDISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTKFIDSEV- 242
Query: 258 QTFPEIKEMLKANE-PAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+I++ E +KC F++C H+ EP C VK E RY Y L+E
Sbjct: 243 ----QIRDAFVEFEFGSKCKFSDCKHINEPDCYVKSKLESGSISKSRYDSYIFYLNE 295
>gi|290968500|ref|ZP_06560039.1| ribosome small subunit-dependent GTPase A [Megasphaera genomosp.
type_1 str. 28L]
gi|290781496|gb|EFD94085.1| ribosome small subunit-dependent GTPase A [Megasphaera genomosp.
type_1 str. 28L]
Length = 285
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 39/287 (13%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD +++ ID +G+IE V R E+ P VANVD ++++ + PKL
Sbjct: 30 KVKTKILVGDMLMITPID--TSKGVIEQVLARKNELRRPAVANVDQIMVVMTPAVPKLNY 87
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESKLGLDS 152
L + L LNK EL + W ++ + GYE S + G+ +
Sbjct: 88 RLTDTLLASCMYQHLTPILLLNKCELNPH--MTQWYTKYYRQCGYEVYAVSAYTGAGIGA 145
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+ RL + TV GPSGVGKSSL+ + ED +G V
Sbjct: 146 VTARLDGKMTVFSGPSGVGKSSLLARITGR----------------------EDLHIGAV 183
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272
S K RG+HTTRH ++PL Y+ DTPGF+ +L + + FPE L
Sbjct: 184 SKKIQRGRHTTRHAEIIPLREQTYVVDTPGFSAVALASAAPEEIQNLFPEFVPYL----- 238
Query: 273 AKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+C F+ C H+ EP C +K + RY+ Y QL + R++
Sbjct: 239 GRCRFSPCAHMAEPDCRIKEAVKDEHIFRARYESYCQLFQAAKERKK 285
>gi|282878180|ref|ZP_06286976.1| ribosome small subunit-dependent GTPase A [Prevotella buccalis ATCC
35310]
gi|281299598|gb|EFA91971.1| ribosome small subunit-dependent GTPase A [Prevotella buccalis ATCC
35310]
Length = 310
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 118/243 (48%), Gaps = 37/243 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV--DEEVLNTWKSR 131
AN+D LL+ ++ QP+ + RFL AE+ +P+ L NK +L+ DE
Sbjct: 85 AANLDQALLIITIKQPETSTTFIDRFLAGAEAYRVPVVLVFNKTDLLNDDERRYQQQMVT 144
Query: 132 LH-TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
L+ T GY + S E+ +G+D L L+ + T++ G SGVGKS+LINA+ PHA
Sbjct: 145 LYETIGYPCIEISAETGMGIDQLQTLLKQKVTLVSGNSGVGKSTLINAI--IPHA----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
DQR E+S G G HTT ++ L+ GGYL DTPG
Sbjct: 198 ---------------DQRTAEISNAHGTGMHTTTFSEMIELAEGGYLIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ L F EI E K C FNNC H EPGC V E RYQ Y +
Sbjct: 243 IEREELTSYFKEIFEFSK-----DCKFNNCTHTHEPGCAVIQAIENHYISVSRYQSYLNM 297
Query: 304 LDE 306
L++
Sbjct: 298 LED 300
>gi|167753956|ref|ZP_02426083.1| hypothetical protein ALIPUT_02241 [Alistipes putredinis DSM 17216]
gi|167658581|gb|EDS02711.1| ribosome small subunit-dependent GTPase A [Alistipes putredinis DSM
17216]
Length = 309
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 54/316 (17%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRR----VLVGDKVV-------VGSI-DWVDRRGMI--- 59
D G + C +R L+ R V+VGD+VV G I + V RR I
Sbjct: 18 DVRTNAGETVKCRIRGRLRLKGVRSTNPVVVGDRVVCERDEEDAGVICEVVPRRNYIIRR 77
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ + + I+ AN+D LL+ ++ P P + RFLV E+ +P+T+ L K +L
Sbjct: 78 ASNLSKESHII---AANLDRALLVVTLFSPVTAPEFIDRFLVTCEAYRVPVTILLAKADL 134
Query: 120 V--DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
D E + +K+ + GY L S G++++ + L+ TT++ G SGVGKS+L
Sbjct: 135 AAQDPEAVAAFKATYESAGYSVLEVSALDGTGIEAVRELLKGHTTLLAGNSGVGKSTLAG 194
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
+ EP L D R G++S +G+HTT ++ PLS GGYL
Sbjct: 195 TV----------------EPGL------DIRTGDISESHHKGRHTTTFSTMYPLSSGGYL 232
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG----- 292
DTPG L+ + L FPE+ + +C F NC H+ EPGC V+
Sbjct: 233 IDTPGIKGFGLIDIADAELWHYFPEMMRL-----APQCRFYNCTHVHEPGCAVREAVERG 287
Query: 293 --DWERYQYYFQLLDE 306
W+RY+ Y ++LD+
Sbjct: 288 EISWQRYESYLKMLDD 303
>gi|410632746|ref|ZP_11343397.1| ribosome-associated GTPase [Glaciecola arctica BSs20135]
gi|410147611|dbj|GAC20264.1| ribosome-associated GTPase [Glaciecola arctica BSs20135]
Length = 344
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 55/320 (17%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI 69
+ +D D+ GV V R +++ V+ GD+V+ G + G+IE V R + +
Sbjct: 51 KHADVEDQNGV----VHRCHMRRTITSVVCGDEVLFRPGKDQTLTISGIIEIVQDRKSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L + R+LV AE I + LNKVEL+D
Sbjct: 107 TRPDFYDGVKPVAANIDQIIIVSSV-IPSLSLNIIDRYLVAAEDVEITPVILLNKVELLD 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+ L+ +S+L+ + GY+ ++ S ++ GLD L L+D+ +V VG SGVGKSSLIN
Sbjct: 166 SQQLSEVESQLNIYRDIGYQIVYTSCKTLTGLDELAACLKDKISVFVGQSGVGKSSLINE 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT LL GG L
Sbjct: 226 LL--PEA--------------------DEVIGDISDNSGLGQHTTTTAKLLHFPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE--- 295
D+PG + +L + + L F E ++ L C F +C H +PGC++K E
Sbjct: 264 DSPGVREFALWHLPAERLTNGFKEFRDYL-----GGCKFRDCKHGNDPGCLIKAAVEEGK 318
Query: 296 ----RYQYYFQLL---DEIR 308
RYQ Y ++L DE+R
Sbjct: 319 ISSQRYQSYHKILLNMDELR 338
>gi|114566750|ref|YP_753904.1| GTPase EngC [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337685|gb|ABI68533.1| GTPase EngC [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 294
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 142/293 (48%), Gaps = 39/293 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R KIK V GD+V ++ +G++E++ R E+ P +ANV+ LL++ +
Sbjct: 30 CKLRG---KIKAPVFTGDRVKFTPLE--AGKGILESIIPRKNELYRPRIANVNLLLIIMA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
QP L + L+ A I + LNK +L + + G P+ S
Sbjct: 85 CKQPSPSLILLDKLLLLASYYRITPQILLNKSDLPPDSKSIFIEDYYPQMGLPPIKTSAI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K G+D+L + ++ TV GPSG GKSSL+NAL D V
Sbjct: 145 KKTGIDTLRIVIENKITVFAGPSGAGKSSLLNAL------VDGISV-------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ E+S K RGKHTTRHV L PL GG++ADTPGF+Q + + LA F ++
Sbjct: 185 --KTQELSKKVERGKHTTRHVELYPLESGGWIADTPGFSQLEIPAIKSSELASYFNDLSS 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
+ + +C FN+CLH GE C VK RYQ Y +L+EI +E
Sbjct: 243 VAE-----ECKFNDCLHQGEKECAVKDAVNEGLIAKSRYQNYISILEEILAKE 290
>gi|172057931|ref|YP_001814391.1| ribosome small subunit-dependent GTPase A [Exiguobacterium
sibiricum 255-15]
gi|171990452|gb|ACB61374.1| ribosome small subunit-dependent GTPase A [Exiguobacterium
sibiricum 255-15]
Length = 301
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 144/284 (50%), Gaps = 46/284 (16%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD+VV + G I V R ++ PPVAN+D LL+ S +P L RF
Sbjct: 47 VVGDEVV---LHIESETGYILEVKDRQNFLVRPPVANIDQALLVVSAAEPDFSAHLLDRF 103
Query: 100 LVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E+ I + L K++L+ E+ ++ + T GY+ + S E+ G++S+
Sbjct: 104 LVLIEAKEIQPIIILTKMDLLQGEAEQHVSEAIAAYRTIGYQVIETSSETLTGVESVRPL 163
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+D+T+V+ G SGVGKSSL+NAL EP L + +S
Sbjct: 164 LKDKTSVLAGQSGVGKSSLLNAL----------------EPSLALE------TSHISKAL 201
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV+L+PL G G +ADTPGF+ P +++ + L FPE +
Sbjct: 202 GRGRHTTRHVTLMPL-GDGLIADTPGFSNLDFPHEMEL--EELRWCFPEFVALQD----- 253
Query: 274 KCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C + CLHL EPGC VK E RY Y ++EI+ R
Sbjct: 254 DCKYRGCLHLNEPGCAVKQAVEAHEIMSSRYTNYGMFVEEIKNR 297
>gi|422416339|ref|ZP_16493296.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
J1-023]
gi|313623274|gb|EFR93518.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
J1-023]
Length = 291
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 MED-----RRSGCKFRGCMHENEPNCAVKTAVEANEIADFRYKHYIQILQELKNRK 288
>gi|148656597|ref|YP_001276802.1| ribosome small subunit-dependent GTPase A [Roseiflexus sp. RS-1]
gi|148568707|gb|ABQ90852.1| ribosome small subunit-dependent GTPase A [Roseiflexus sp. RS-1]
Length = 296
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 145/306 (47%), Gaps = 53/306 (17%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
L+C +R LKK ++ ++GD V V + G+IE V R T++
Sbjct: 18 LMCTLRGRLKKERQSTDIAVIGDLVEV--TPTMPGHGVIEAVLPRRTKLARRAPASKGVW 75
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D AN++ LL+FS P+ P L R+LV E++ + + NKV+LV E +
Sbjct: 76 KEDVLAANIEQALLVFSCASPEFSPRMLDRYLVLIETSDLDAVIVANKVDLVGEAEAHRL 135
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ Y ++ S + G+D+L +RL + +V+ G SGVGKSSL NA+
Sbjct: 136 FAPYERLEYPVIYTSAVTGYGIDALRERLEGRISVVTGRSGVGKSSLFNAV--------- 186
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYLADTPGFNQP 246
+P LG VG +ST +G+HTTR L+P L GGGYLADTPG +
Sbjct: 187 -------QPGLGLA------VGAISTALNKGRHTTRVAELIPLDLPGGGYLADTPGIREL 233
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQY 299
L + K LA+ F E + L C F C H+ EP C V+ ERY
Sbjct: 234 GLWRFPKDELARCFREFRPYL-----GDCYFAGCTHIHEPDCAVRAALARGEITPERYDS 288
Query: 300 YFQLLD 305
Y +L +
Sbjct: 289 YVRLFE 294
>gi|16800999|ref|NP_471267.1| ribosome-associated GTPase [Listeria innocua Clip11262]
gi|38257726|sp|Q92AI9.1|RSGA2_LISIN RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|16414434|emb|CAC97163.1| lin1933 [Listeria innocua Clip11262]
Length = 291
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 MED-----RRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYKHYIQILQELKNRK 288
>gi|423098728|ref|ZP_17086436.1| ribosome small subunit-dependent GTPase A [Listeria innocua ATCC
33091]
gi|370794555|gb|EHN62318.1| ribosome small subunit-dependent GTPase A [Listeria innocua ATCC
33091]
Length = 307
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 41 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 99 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAIYKEVYETIGYDVFVT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S A
Sbjct: 159 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTLKTA-------------- 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 203 --------EISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 253
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 254 MED-----RRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYKHYIQILQELKNRK 304
>gi|297617053|ref|YP_003702212.1| ribosome small subunit-dependent GTPase A [Syntrophothermus
lipocalidus DSM 12680]
gi|297144890|gb|ADI01647.1| ribosome small subunit-dependent GTPase A [Syntrophothermus
lipocalidus DSM 12680]
Length = 293
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 39/291 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C +R KI+ +V+ GD+VV+ + G++E V R TE++ P +ANVD + ++
Sbjct: 27 LACKLRG---KIRDQVVTGDRVVITVLG--TGTGVVEKVLPRRTELVRPRIANVDKVFIV 81
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS + P+ L R LV A G+ + LNK +L GY+ + S
Sbjct: 82 FSCNCPEPSLVLLDRLLVLASCHGLYPYIVLNKCDLDPAPRAVDIIDYYPRAGYKLILTS 141
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G+D +++ + +V+ GPSGVGKSSL+NA + ++
Sbjct: 142 AVNGEGIDEVVKEVEGSISVLAGPSGVGKSSLLNA-------------------VFPDRY 182
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
Q E+S K+GRG+HTTRHV L L GG++ADTPGF+ L ++ ++ LA+ F E
Sbjct: 183 LPTQ---EISEKTGRGRHTTRHVELFSLENGGWIADTPGFSVMDLPRMKREDLARHFIEF 239
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ + A C F +CLH E C VK RYQ Y L E+
Sbjct: 240 EPL-----AAYCRFADCLHYQEENCAVKESVSRGEIAQFRYQNYCSFLGEV 285
>gi|404413898|ref|YP_006699485.1| GTPase [Listeria monocytogenes SLCC7179]
gi|404239597|emb|CBY60998.1| putative GTPase [Listeria monocytogenes SLCC7179]
Length = 290
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 43/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ K +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NEPDK---EAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 182
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 183 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 236
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C + C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 237 IE-----DRRSGCKYRGCMHENEPSCAVKTAVEANEIAEFRYKHYIQILQELKNRK 287
>gi|302386499|ref|YP_003822321.1| ribosome small subunit-dependent GTPase A [Clostridium
saccharolyticum WM1]
gi|302197127|gb|ADL04698.1| ribosome small subunit-dependent GTPase A [Clostridium
saccharolyticum WM1]
Length = 292
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 132/293 (45%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V +D ++++G I+ + R ++ P VANVD L+LF+
Sbjct: 25 CKAKGIFRNKNVKPLVGDDVEFSVLDRLEKKGNIDLILPRKNALVRPAVANVDQALVLFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV E +P+ + NK +L + GY F S
Sbjct: 85 ITHPEPNLNLLDRFLVMMEVQEVPVKICFNKTDLCGSDKKQALGEIYEAAGYPLYFTSTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + ++ +TTV+ GPSGVGKSSL N L P A
Sbjct: 145 DDQGIEEIKELVQGKTTVLAGPSGVGKSSLTNLL--FPQA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +S K RGKHTTRH L + YL DTPGF+ + + L FPE +
Sbjct: 183 EMETANISEKIQRGKHTTRHSELFGMGRDTYLMDTPGFSSMYMEDLECGRLKDYFPEFES 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLLDEIR 308
C F C+H+GE C VK +E Y+ ++Q L E R
Sbjct: 243 YEDG-----CRFLGCVHIGEKTCGVKDAVEEGKINRSRYENYRLFYQELKEKR 290
>gi|408673084|ref|YP_006872832.1| ribosome biogenesis GTPase RsgA [Emticicia oligotrophica DSM 17448]
gi|387854708|gb|AFK02805.1| ribosome biogenesis GTPase RsgA [Emticicia oligotrophica DSM 17448]
Length = 302
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 53/311 (17%)
Query: 20 TGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV- 74
TG L C ++ K K+ + VGDKVV D G+I ++ R I+ V
Sbjct: 14 TGAMLQCRLKGKFKIKGLKVTNPIAVGDKVVFEIEDENRNTGIINDILPRENYIIRQSVH 73
Query: 75 ---------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
N+D +L+ +++ P+ + RFLV AES IP L NK++L++EE +
Sbjct: 74 KTAHGHLLATNLDQAVLIATLNFPRTSLGFIDRFLVAAESFRIPTVLVFNKLDLLNEEQI 133
Query: 126 NTWKSRL----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
++ L + Y+ +F S +G+D + L+D+ +++ G SGVGKS+L+NA+
Sbjct: 134 -AYQQELADLYESLNYKCIFTSAVDGIGVDEFYEVLKDKVSLLSGHSGVGKSTLVNAI-- 190
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+P+ D R EVST + +G HTT + LS G ++ D+P
Sbjct: 191 APNL--------------------DLRTSEVSTFANKGVHTTTFAEMFELSHGTFIIDSP 230
Query: 242 GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------- 294
G + L + K + FPE+ E+L +C FNNC H+ EP C VK
Sbjct: 231 GIKELGLADMEKDEICHYFPEMLEILD-----ECRFNNCKHIDEPNCAVKEAVMDGRIAE 285
Query: 295 ERYQYYFQLLD 305
RY Y ++D
Sbjct: 286 SRYFSYLSMMD 296
>gi|116873254|ref|YP_850035.1| ribosome-associated GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742132|emb|CAK21256.1| GTPase, putative [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 291
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVMSRENSLVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIMVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNNLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 MED-----RRSGCKFRGCMHDNEPNCAVKTAVEANEIADFRYKHYIQILQELKNRK 288
>gi|156742326|ref|YP_001432455.1| ribosome small subunit-dependent GTPase A [Roseiflexus castenholzii
DSM 13941]
gi|156233654|gb|ABU58437.1| ribosome small subunit-dependent GTPase A [Roseiflexus castenholzii
DSM 13941]
Length = 300
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 53/306 (17%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
++C +R LKK ++ ++GD V V + G+IE V R T++
Sbjct: 22 VMCTLRGRLKKERQSTDLAVIGDLVEV--TPTMPGHGVIEAVLPRRTKLARRAPASKGVW 79
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D AN+D LL+FS P+ P L R+LV E++ + + NKV+LV E+
Sbjct: 80 KEDVLAANLDQALLVFSCASPEFSPRMLDRYLVLTETSDLDAVIVANKVDLVGEKEARRL 139
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ Y L+ S + LG+++L +RL + +++ G SGVGKSSL N +
Sbjct: 140 FAPYERLEYPVLYTSAVTGLGINALRERLAGRISIVTGRSGVGKSSLFNVV--------- 190
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYLADTPGFNQP 246
+P LG K VG VS +G+HTTR L+P L GGGYLADTPG +
Sbjct: 191 -------QPGLGLK------VGSVSAALNKGRHTTRVAELIPLDLPGGGYLADTPGIREL 237
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQY 299
L + K LA+ F E + L +C F C H+ EP C V+ ERY
Sbjct: 238 GLWRFPKDELARCFREFRPYL-----GECYFAGCTHIHEPDCAVRAALARGEITPERYDS 292
Query: 300 YFQLLD 305
Y +L +
Sbjct: 293 YVRLFE 298
>gi|357059546|ref|ZP_09120388.1| ribosome small subunit-dependent GTPase A [Selenomonas infelix ATCC
43532]
gi|355371623|gb|EHG18967.1| ribosome small subunit-dependent GTPase A [Selenomonas infelix ATCC
43532]
Length = 290
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 146/299 (48%), Gaps = 42/299 (14%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + ++ GD V + I G+IE + +R+ + P VAN+ ++
Sbjct: 24 ILCKLRGRVKKGRSDMGLVPGDLVALERIS--PEEGVIERIEERTNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G+ + L +NK++L + T+ + GY L
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAELSGVKKIILCVNKMDLCTGDP-ATFLAEYEAAGYPVL 140
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S E GL L +RL + TV+ GPSG GKSSL+NAL +P L
Sbjct: 141 RVSAEQGTGLAELRERLAGEITVLTGPSGAGKSSLLNAL----------------DPSLA 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR LLP GGY+ DTPGF Q L ++ + L F
Sbjct: 185 ------LVTGAVSEKIGRGRHTTRRAELLPFM-GGYVVDTPGFTQQELTELGPEDLTHCF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312
P+ C F+ C H EP C VK ERY Y LL+E+R +++
Sbjct: 238 PDFAHY------TGCRFSPCSHSHEPDCAVKAAVEAEALSRERYDAYIALLNELRTKKK 290
>gi|87309824|ref|ZP_01091958.1| hypothetical protein DSM3645_03393 [Blastopirellula marina DSM
3645]
gi|87287588|gb|EAQ79488.1| hypothetical protein DSM3645_03393 [Blastopirellula marina DSM
3645]
Length = 257
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 131/256 (51%), Gaps = 37/256 (14%)
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
R G++ +R ++ VANVD LL++ S +P L+P + R+LV AE GI + +
Sbjct: 26 RYGILCRASKRRQHVI---VANVDQLLIVASAAEPYLKPNLIDRYLVTAEKAGITPVICI 82
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NKV+L+D L GY+ + S +G++ L +RD+ +V+ G SGVGKS+
Sbjct: 83 NKVDLIDPADLQPLVGVYGQMGYQVILLSATEGIGVERLRAAVRDRASVLSGQSGVGKST 142
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
++NA+ EP L + RVG VS + +G+HTT SL+PL+ G
Sbjct: 143 ILNAI----------------EPGL------NLRVGHVSETTDKGRHTTTTSSLVPLAAG 180
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292
G++ DTPG Q L V + +A F +++ + C F +C H E GC VKG
Sbjct: 181 GHVVDTPGIRQFQLWDVIPEEVAGYFRDLRPFITG-----CRFPDCSHTHEEGCGVKGAV 235
Query: 293 -----DWERYQYYFQL 303
D RY+ Y Q+
Sbjct: 236 ADGFLDVRRYESYCQI 251
>gi|284113714|ref|ZP_06386624.1| GTPase EngC [Candidatus Poribacteria sp. WGA-A3]
gi|283829640|gb|EFC33972.1| GTPase EngC [Candidatus Poribacteria sp. WGA-A3]
Length = 324
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 145/314 (46%), Gaps = 60/314 (19%)
Query: 24 LLCVVRALLKKIKR----RVLVGDKVVVGSIDWVD------RRGMIENVFQRST------ 67
L C +R LK+ R R L D V VG DWV G+IE++ R T
Sbjct: 36 LRCTLRGTLKRRNRSETGRRLYADPVAVG--DWVIFTQLDMEEGVIEDILPRRTKFSRQY 93
Query: 68 -----EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
+I VAN ++ + S P L L RFL+ AE+ + + LNK++LVDE
Sbjct: 94 AGRHEDIEQVIVANAHQIVAVVSTLMPPLNFRTLDRFLILAEAGDMEAVVCLNKMDLVDE 153
Query: 123 EVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + GY ++ S+ LD+L L+D+ +VIVG SGVGKSSL+NAL
Sbjct: 154 AQRTELTATFAVYEKLGYGVIYTSINVPESLDALRNALKDKFSVIVGASGVGKSSLLNAL 213
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+ S D R GEV ++ +G+HTT V PL GG +AD
Sbjct: 214 QPSL----------------------DLRTGEVGIRTQKGRHTTTLVERFPLDIGGEVAD 251
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------- 292
TPG + L V ++L FPE++ L C +N+C H+ EP C ++
Sbjct: 252 TPGIREVGLWGVDTENLEYYFPEMEPYL-----GTCKYNDCAHVAEPDCAIQDAVEAGEI 306
Query: 293 DWERYQYYFQLLDE 306
ERY+ Y L E
Sbjct: 307 HTERYRSYVVLRTE 320
>gi|325294531|ref|YP_004281045.1| ribosome biogenesis GTPase RsgA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064979|gb|ADY72986.1| ribosome biogenesis GTPase RsgA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 294
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 44/285 (15%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K K +V GDKV +D IE + +R ++ PP+ANV+ ++++ ++ P +
Sbjct: 34 KKKDKVYAGDKVKGRIVD--SESFAIEVIEERKNLLIRPPIANVEKVVIVATIQNPPFQS 91
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVESKLGL 150
F + LV G+ + NK++L+DE E L W + GY+ + S E+K G+
Sbjct: 92 FLMDNLLVVYSYLGLDTVIVFNKIDLLDEVGKEELQRWYTIYKNAGYKVIKTSAETKEGI 151
Query: 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210
+ L + L ++ GPSGVGKSSLI+ L ++ R+G
Sbjct: 152 EELRRELLGAISIFAGPSGVGKSSLISKLTG-----------------------KELRIG 188
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPEIKEMLKA 269
EVS K+ RGKHTTR V L+P G ++ D PGF++ L + K+ + FPE
Sbjct: 189 EVSRKTERGKHTTREVRLIPFE-GSFIGDAPGFSRVEALNFMEKEEVRFYFPEFLRY--- 244
Query: 270 NEPAKCSFNNCLHLGEPGCVV-----KGD--WERYQYYFQLLDEI 307
+C +++CLHL E GC V KG+ ERY+ Y ++ E
Sbjct: 245 ----QCKYSDCLHLNEEGCEVREALKKGEISCERYKNYLKMTKEF 285
>gi|392529126|ref|ZP_10276263.1| ribosome-associated GTPase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083582|ref|YP_006992290.1| ribosome small subunit-dependent GTPase A [Carnobacterium
maltaromaticum LMA28]
gi|412997166|emb|CCO10975.1| ribosome small subunit-dependent GTPase A [Carnobacterium
maltaromaticum LMA28]
Length = 298
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 41/283 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + + G+++ + R E++ P VANVD +++ S +P L RF
Sbjct: 39 LVGDEVIFESGNQDE--GILKELLPRKNELVRPTVANVDLGVIVMSAVEPNFSSNLLDRF 96
Query: 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVE-SKLGLDSLLQ 155
LV ES I + L K++L+D+E + K GY + E ++ L
Sbjct: 97 LVTLESKKIKALIYLTKIDLLDQEQYQEMEQIKVAYEKIGYPVILPKREMDHEPIEELTP 156
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+++ TV +G SG GKS+L+N + A D A + G +S
Sbjct: 157 YFKEKITVFMGQSGAGKSTLLNQI-----APDLA-----------------LKTGVISNA 194
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV LLPL GG +ADTPGF+ L+V L + FP+ E+ +C
Sbjct: 195 LGRGKHTTRHVELLPLY-GGLVADTPGFSSIEFLEVEADELPELFPDFVEV-----QHEC 248
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
F C H EPGC VK D E RY++Y Q L+E+ R+
Sbjct: 249 RFRGCKHREEPGCQVKKDVEEGTILASRYKHYLQFLEEVENRK 291
>gi|16803859|ref|NP_465344.1| ribosome-associated GTPase [Listeria monocytogenes EGD-e]
gi|47096540|ref|ZP_00234130.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
str. 1/2a F6854]
gi|254829186|ref|ZP_05233873.1| ribosome-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|254912377|ref|ZP_05262389.1| ribosome-associated GTPase [Listeria monocytogenes J2818]
gi|254936704|ref|ZP_05268401.1| ribosome-associated GTPase [Listeria monocytogenes F6900]
gi|255027280|ref|ZP_05299266.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-003]
gi|255029853|ref|ZP_05301804.1| ribosome-associated GTPase [Listeria monocytogenes LO28]
gi|284802265|ref|YP_003414130.1| ribosome-associated GTPase [Listeria monocytogenes 08-5578]
gi|284995407|ref|YP_003417175.1| ribosome-associated GTPase [Listeria monocytogenes 08-5923]
gi|386047472|ref|YP_005965804.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
J0161]
gi|386050796|ref|YP_005968787.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-561]
gi|404284315|ref|YP_006685212.1| GTPase [Listeria monocytogenes SLCC2372]
gi|405758870|ref|YP_006688146.1| GTPase [Listeria monocytogenes SLCC2479]
gi|38257699|sp|Q8Y680.1|RSGA2_LISMO RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|16411273|emb|CAC99897.1| lmo1819 [Listeria monocytogenes EGD-e]
gi|47015072|gb|EAL06015.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258601596|gb|EEW14921.1| ribosome-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|258609301|gb|EEW21909.1| ribosome-associated GTPase [Listeria monocytogenes F6900]
gi|284057827|gb|ADB68768.1| ribosome-associated GTPase [Listeria monocytogenes 08-5578]
gi|284060874|gb|ADB71813.1| ribosome-associated GTPase [Listeria monocytogenes 08-5923]
gi|293590359|gb|EFF98693.1| ribosome-associated GTPase [Listeria monocytogenes J2818]
gi|345534463|gb|AEO03904.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
J0161]
gi|346424642|gb|AEO26167.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-561]
gi|404233817|emb|CBY55220.1| putative GTPase [Listeria monocytogenes SLCC2372]
gi|404236752|emb|CBY58154.1| putative GTPase [Listeria monocytogenes SLCC2479]
gi|441471580|emb|CCQ21335.1| Putative ribosome biogenesis GTPase RsgA 2 [Listeria monocytogenes]
gi|441474711|emb|CCQ24465.1| Putative ribosome biogenesis GTPase RsgA 2 [Listeria monocytogenes
N53-1]
Length = 291
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C + C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKYRGCMHENEPSCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|217964028|ref|YP_002349706.1| ribosome-associated GTPase [Listeria monocytogenes HCC23]
gi|290893051|ref|ZP_06556040.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|386008591|ref|YP_005926869.1| GTPase, putative [Listeria monocytogenes L99]
gi|386027199|ref|YP_005947975.1| ribosome-associated GTPase [Listeria monocytogenes M7]
gi|404408263|ref|YP_006690978.1| GTPase [Listeria monocytogenes SLCC2376]
gi|217333298|gb|ACK39092.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
HCC23]
gi|290557411|gb|EFD90936.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|307571401|emb|CAR84580.1| GTPase, putative [Listeria monocytogenes L99]
gi|336023780|gb|AEH92917.1| ribosome-associated GTPase [Listeria monocytogenes M7]
gi|404242412|emb|CBY63812.1| putative GTPase [Listeria monocytogenes SLCC2376]
Length = 291
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
++ + + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 ME-----DRRSGCKFRGCMHENEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|386044128|ref|YP_005962933.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
10403S]
gi|386054074|ref|YP_005971632.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
Finland 1998]
gi|404411120|ref|YP_006696708.1| GTPase [Listeria monocytogenes SLCC5850]
gi|345537362|gb|AEO06802.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
10403S]
gi|346646725|gb|AEO39350.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
Finland 1998]
gi|404230946|emb|CBY52350.1| putative GTPase [Listeria monocytogenes SLCC5850]
Length = 291
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I+ + + C + C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 IE-----DRRSGCKYRGCMHENEPSCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|410612134|ref|ZP_11323217.1| ribosome-associated GTPase [Glaciecola psychrophila 170]
gi|410168325|dbj|GAC37106.1| ribosome-associated GTPase [Glaciecola psychrophila 170]
Length = 344
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 159/320 (49%), Gaps = 55/320 (17%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI 69
+ +D D+ G V R +++ V+ GD+V+ G + G+IE V R + +
Sbjct: 51 KHADVEDRAGT----VHRCHMRRTINSVVCGDEVLFRPGKDQTLSISGIIEIVQDRKSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L + R+LV AE I + LNKVEL+D
Sbjct: 107 TRPDFYDGVKPVAANIDQIIIVSSV-LPSLSLNIIDRYLVAAEDVEITPVVLLNKVELLD 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+ LN +S+L+ + GY+ ++ S ++ GLD L L+D+ +V VG SGVGKSSLIN
Sbjct: 166 PQQLNEVESQLNIYRDIGYQIVYTSCKTLTGLDELAVCLKDKVSVFVGQSGVGKSSLINE 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT LL GG L
Sbjct: 226 LL--PEA--------------------DEIIGDISDNSGLGQHTTTTAKLLHFPDGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE--- 295
D+PG + +L + + L F E ++ L C F +C H +PGC++K E
Sbjct: 264 DSPGVREFALWHLPAERLTNGFREFRDYL-----GGCKFRDCKHGNDPGCLIKAAVEEGK 318
Query: 296 ----RYQYYFQLL---DEIR 308
RYQ Y ++L DE+R
Sbjct: 319 ISPQRYQSYHKILLNMDELR 338
>gi|379012007|ref|YP_005269819.1| ribosome-associated GTPase RsgA [Acetobacterium woodii DSM 1030]
gi|375302796|gb|AFA48930.1| ribosome-associated GTPase RsgA [Acetobacterium woodii DSM 1030]
Length = 300
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 137/293 (46%), Gaps = 43/293 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG--MIENVFQRSTEILDPPVANVDHLLLL 83
C R +L+ K VGD+V++ S D G MIE++ R L PPV NVD L++
Sbjct: 37 CKARGVLRHQKIIPTVGDEVMIQS----DNPGEWMIESILPRKNIFLRPPVVNVDIGLIV 92
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM PK L LV +ES + + K +L K Y+ F S
Sbjct: 93 FSMTNPKPNLLLLDMLLVSSESQNVEPIVCFTKRDLTSTAEEKEIKEIYQKTPYKLFFFS 152
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+D ++ + +T + GPSGVGKS++ N L AD
Sbjct: 153 QNDNHTMDEIIAEIGGKTAFMAGPSGVGKSTMANYL--------CAD------------- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPE 262
+ G +S K RGKHTTRHV LL GG+L DTPGF+ + ++ + + L + FPE
Sbjct: 192 -QTMETGALSRKLKRGKHTTRHVELLETKNGGFLLDTPGFSSYKISEMIEPEELREYFPE 250
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIR 308
KC F +CLH EPGC VK G+ RY++Y +LDEI+
Sbjct: 251 FPR-------GKCRFKSCLHKNEPGCDVKKAVTNGEISSVRYEHYLNMLDEIK 296
>gi|422410066|ref|ZP_16487027.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
FSL F2-208]
gi|313608151|gb|EFR84203.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
FSL F2-208]
Length = 291
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASEPEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
++ + + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 ME-----DRRSGCKFRGCMHENEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|352518690|ref|YP_004888007.1| putative ribosome small subunit-dependent GTPase A [Tetragenococcus
halophilus NBRC 12172]
gi|348602797|dbj|BAK95843.1| putative ribosome small subunit-dependent GTPase A [Tetragenococcus
halophilus NBRC 12172]
Length = 292
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 42/281 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV S + + G + + R ++L PPVANVD +++ S+ +P+ F L RF
Sbjct: 38 LVGDYVVFESENLTE--GYLLEILPRKNKLLRPPVANVDQSVIVISLTEPQFSYFLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
L+ E I + L+K +L V E++ + GY + + E + S LQ L
Sbjct: 96 LISIEYEDIEPLIYLSKADLSVAPELIEEIATTYRKIGYTVIVSTEEKAM---SNLQNLF 152
Query: 159 DQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ TV G SG GKS+L+N L + A E+S G
Sbjct: 153 PKCLTVFTGQSGAGKSALLNRLMPQLNLETA----------------------EISDALG 190
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV LLP++ G +ADTPGF+ + +T++ LA+ FPE + C F
Sbjct: 191 RGRHTTRHVELLPVA-DGLVADTPGFSAINFSTITERELAKQFPEF-----VQASSYCRF 244
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
CLHL EP C VK E RY Y LDEI+ R+
Sbjct: 245 RECLHLNEPDCEVKRQVETNDIAKSRYDNYVYFLDEIKNRK 285
>gi|46908051|ref|YP_014440.1| ribosome-associated GTPase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224422|ref|YP_002758529.1| hypothetical protein Lm4b_01835 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826139|ref|ZP_05231140.1| ribosome-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|254852726|ref|ZP_05242074.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-503]
gi|254933291|ref|ZP_05266650.1| ribosome-associated GTPase [Listeria monocytogenes HPB2262]
gi|300763868|ref|ZP_07073865.1| ribosome-associated GTPase YjeQ [Listeria monocytogenes FSL N1-017]
gi|386732559|ref|YP_006206055.1| GTPase RsgA [Listeria monocytogenes 07PF0776]
gi|404281432|ref|YP_006682330.1| GTPase [Listeria monocytogenes SLCC2755]
gi|404287248|ref|YP_006693834.1| GTPase [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750171|ref|YP_006673637.1| GTPase [Listeria monocytogenes ATCC 19117]
gi|405753046|ref|YP_006676511.1| GTPase [Listeria monocytogenes SLCC2378]
gi|405755980|ref|YP_006679444.1| GTPase [Listeria monocytogenes SLCC2540]
gi|406704603|ref|YP_006754957.1| GTPase, putative [Listeria monocytogenes L312]
gi|417315468|ref|ZP_12102144.1| GTPase RsgA [Listeria monocytogenes J1816]
gi|417317920|ref|ZP_12104521.1| GTPase RsgA [Listeria monocytogenes J1-220]
gi|424714694|ref|YP_007015409.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
serotype 4b str. LL195]
gi|424823580|ref|ZP_18248593.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
str. Scott A]
gi|67460493|sp|Q71YJ7.1|RSGA1_LISMF RecName: Full=Putative ribosome biogenesis GTPase RsgA 1
gi|46881321|gb|AAT04617.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 4b str. F2365]
gi|225876884|emb|CAS05593.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606049|gb|EEW18657.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-503]
gi|293584851|gb|EFF96883.1| ribosome-associated GTPase [Listeria monocytogenes HPB2262]
gi|293595379|gb|EFG03140.1| ribosome-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|300515604|gb|EFK42654.1| ribosome-associated GTPase YjeQ [Listeria monocytogenes FSL N1-017]
gi|328466172|gb|EGF37329.1| GTPase RsgA [Listeria monocytogenes J1816]
gi|328473546|gb|EGF44383.1| GTPase RsgA [Listeria monocytogenes J1-220]
gi|332312260|gb|EGJ25355.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
str. Scott A]
gi|384391317|gb|AFH80387.1| GTPase RsgA [Listeria monocytogenes 07PF0776]
gi|404219371|emb|CBY70735.1| GTPase, putative [Listeria monocytogenes ATCC 19117]
gi|404222246|emb|CBY73609.1| putative GTPase [Listeria monocytogenes SLCC2378]
gi|404225180|emb|CBY76542.1| putative GTPase [Listeria monocytogenes SLCC2540]
gi|404228067|emb|CBY49472.1| putative GTPase [Listeria monocytogenes SLCC2755]
gi|404246177|emb|CBY04402.1| GTPase, putative [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361633|emb|CBY67906.1| GTPase, putative [Listeria monocytogenes L312]
gi|424013878|emb|CCO64418.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
serotype 4b str. LL195]
Length = 291
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 MED-----RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|284040664|ref|YP_003390594.1| ribosome small subunit-dependent GTPase A [Spirosoma linguale DSM
74]
gi|283819957|gb|ADB41795.1| ribosome small subunit-dependent GTPase A [Spirosoma linguale DSM
74]
Length = 308
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 47/287 (16%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQ 88
+ VGD+VV D + +I ++ R I+ V AN+D +LL ++
Sbjct: 43 IAVGDRVVFDVEDEAENTAIITDISPRDNYIIRQSVHKTAHGHILAANIDQAVLLATLAM 102
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P+ + RFLV AES IP T+ NK+++++EE L + + + GY L S
Sbjct: 103 PRTSAGFIDRFLVSAESFRIPTTIVFNKIDILNEEGLAFQQEIIDLYERIGYNCLSTSAT 162
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+++ + L + T++ G SGVGKSSL+NA+ P L
Sbjct: 163 EGVGVEAFRELLDQKVTLVAGHSGVGKSSLVNAI----------------APGL------ 200
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ R EVS+ + +G HTT + LS ++ DTPG + L+ +K + FPE+++
Sbjct: 201 NLRTNEVSSFANKGVHTTTFAEMFELSPNTFIIDTPGIKELGLMDTSKTEIGHYFPEMRD 260
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVK-------GDWERYQYYFQLLD 305
L +C FNNCLH+ EPGC +K RY Y +++
Sbjct: 261 RLN-----QCRFNNCLHINEPGCAIKEAVAEEEIAESRYMSYLSMIE 302
>gi|169333682|ref|ZP_02860875.1| hypothetical protein ANASTE_00066 [Anaerofustis stercorihominis DSM
17244]
gi|169259676|gb|EDS73642.1| ribosome small subunit-dependent GTPase A [Anaerofustis
stercorihominis DSM 17244]
Length = 292
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 37/290 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + +K K VGD+V+ +++ G IE + +R + ++ P ++NVD+++++ ++ +
Sbjct: 30 RGIFRKQKITPTVGDEVLFTAVNT--DEGSIEEIIERKSLLIRPSISNVDNIIIVCAVKE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P + F L + ++ A LT+ NK +L D+ + K G+ +F S +
Sbjct: 88 PDISFFLLDKMIINAGIKNADLTICFNKCDLADDTFKDYLKEEYKNSGFNLIFTSNVTGE 147
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G+D + L+D+++V +G SG GKSSLIN+L FE +
Sbjct: 148 GIDEVKSLLKDKSSVFMGVSGAGKSSLINSL---------------FEGY-------NLE 185
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VS K RG+HTTRH L ++ADTPGF+ + V K+ L + E +
Sbjct: 186 TSHVSRKIKRGRHTTRHSELFMEDENTFIADTPGFSSLEVFDVEKEDLYHYYNEFIPYI- 244
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C F NC+H+ EP C VK + RY Y Q+ +EI+ +E
Sbjct: 245 -----NCKFPNCVHINEPVCGVKDAVKEGNISKLRYDTYKQIYEEIKSKE 289
>gi|312143906|ref|YP_003995352.1| ribosome small subunit-dependent GTPase A [Halanaerobium
hydrogeniformans]
gi|311904557|gb|ADQ14998.1| ribosome small subunit-dependent GTPase A [Halanaerobium
hydrogeniformans]
Length = 286
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 51/298 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R +I+ ++ GD V + + IE+ R + P +ANVD +L++ S
Sbjct: 25 CSIRG---RIQEKLYPGDYVKINKEELT-----IEDFLPRKNLLKRPKIANVDQVLIMHS 76
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +P+ + L RF++ ES+G + +NK+EL + +K + + GY+ F
Sbjct: 77 LKKPEFKSSLLDRFILLVESSGFEPLIVINKIELAEA----GYKRQFDDYKKAGYQVYFI 132
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+ L + LL+ L + V+ GPSGVGKSS +N E I G+
Sbjct: 133 SVKENLNFEPLLKTLDKKVNVLTGPSGVGKSSFLN------------------EIIKGA- 173
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL--LKVTKQSLAQTF 260
D + VS K +G HTTR V LL L G++ADTPGF+ S L + ++L+ F
Sbjct: 174 ---DLKTASVSKKLKKGVHTTRLVELLSLENKGWIADTPGFSSMSKVDLDIEAENLSWYF 230
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
PEI ++ C FN C H+ EPGC VK + +RY Y ++ E++ +E
Sbjct: 231 PEIAQL-----NNDCRFNGCNHIHEPGCKVKKEVKSGEISKKRYDNYKEIYTELKEKE 283
>gi|427405961|ref|ZP_18896166.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. F0473]
gi|425708802|gb|EKU71841.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. F0473]
Length = 290
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 142/299 (47%), Gaps = 42/299 (14%)
Query: 24 LLCVVRALLKKIK--RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ C +R +KK + R ++ GD V +D G++E + +R ++ P VAN+ ++
Sbjct: 24 VACKLRGRMKKGRNDRGIVPGDIVTFDRMDA--EEGVVERIEERENLLVRPRVANLTQII 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G + L +NK++L + + + GY L
Sbjct: 82 VTVAAAAPDPHPLVVSRFLVLAERSGAHKIVLCVNKIDLCSGDP-KSIAADYACAGYPVL 140
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ++ G+ +L L + TV GPSG GKSSL+N + +P L
Sbjct: 141 CVSAQTGAGVAALRDLLAGEITVFAGPSGTGKSSLLNTV----------------DPALA 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR L+P + GG++ DTPGF Q L +T + L F
Sbjct: 185 LA------TGTVSEKIGRGRHTTRRAELIPYA-GGFVVDTPGFTQQELSDLTPEELTACF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
PE C F C H EP C VK E RY+ Y LL E+R +++
Sbjct: 238 PEFARY------TGCRFAPCSHSHEPDCAVKEAAEAGAISRARYEAYIALLSELRTKKK 290
>gi|256419475|ref|YP_003120128.1| ribosome-associated GTPase [Chitinophaga pinensis DSM 2588]
gi|256034383|gb|ACU57927.1| ribosome small subunit-dependent GTPase A [Chitinophaga pinensis
DSM 2588]
Length = 311
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 37/245 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW---KS 130
AN+D +L+ ++ +P+ + RFLV A + IP+ L NK ++ E+ L+ + ++
Sbjct: 90 AANMDQAMLICTVKEPRTSNGFMDRFLVTAAAYHIPVILVFNKKDIYKEKDLDKFAELQA 149
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ L S E+ G+D L ++D+TT++ G SGVGKSSLIN L
Sbjct: 150 LYEDIGYKVLLVSAETTDGIDLLKAEMKDKTTLMSGHSGVGKSSLINRLL---------- 199
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L D R VS SG+G HTT + + L GG L DTPG + ++
Sbjct: 200 ------PGL------DLRTTAVSGWSGKGLHTTTYAEMYDLPDGGKLIDTPGVREFGIVD 247
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL 303
+TK L+ F E++ L+ +C FNNCLH+ EPGC VK D ERY Y +
Sbjct: 248 ITKPELSHYFLEMQPYLQ-----ECQFNNCLHINEPGCAVKAAVNEGEIDVERYVSYASI 302
Query: 304 LDEIR 308
L+ I+
Sbjct: 303 LESIQ 307
>gi|403667668|ref|ZP_10932968.1| GTPase EngC [Kurthia sp. JC8E]
Length = 293
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 146/296 (49%), Gaps = 46/296 (15%)
Query: 29 RALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
R + +K LVGD V V G+ D G + V QR E++ PP+AN+D LL+FS
Sbjct: 28 RGVFRKRGITPLVGDFVEYEVEGNND-----GTLTKVEQRKNELVRPPIANIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P+ L RFLV ES I + L K++L+ E + + + GY +
Sbjct: 83 VVEPEFNTILLDRFLVVLESFHIQPLICLTKMDLLPETKQDAIQAYVKDYEAIGYTIIQT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L+ +TTV+ G SGVGKS+L+N L P L
Sbjct: 143 FKDDATLMSKVVPYLKGKTTVLAGQSGVGKSTLLNTLM----------------PQL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + G +S GRGKHTTRHV L+ ++ G +ADTPGF+ + ++ L FP+
Sbjct: 184 ---ELKTGVISDALGRGKHTTRHVELIEVA-EGLIADTPGFSSFDFDTIEREELTYCFPD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ ++ ++ C F CLH+ EP C VK E RY +Y Q L EI R+
Sbjct: 240 LTKLSES-----CKFRGCLHVKEPKCAVKEALETGELKQYRYDHYLQFLQEITDRK 290
>gi|319789685|ref|YP_004151318.1| ribosome small subunit-dependent GTPase A [Thermovibrio
ammonificans HB-1]
gi|317114187|gb|ADU96677.1| ribosome small subunit-dependent GTPase A [Thermovibrio
ammonificans HB-1]
Length = 296
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 46/281 (16%)
Query: 36 KRRVLVGDKVVVGSIDWVDRRGM-IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPF 94
K +V GD +V G + VD IE V +R ++ PP+ANVD ++++ ++ P+ + F
Sbjct: 36 KEKVFAGD-IVEGRV--VDSSTFAIERVKERKNLLVRPPIANVDKVVVVSTLKNPEFQNF 92
Query: 95 ALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
L LV + G+ + NKV+L+D E LN W GY + SVE+ GL
Sbjct: 93 LLDNLLVVYDHLGLDTVVVFNKVDLLDPKEREELNRWVEIYRNAGYPVVTASVETGEGLK 152
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
L + L+ T++ GPSGVGKSSLI+ L + R G+
Sbjct: 153 KLREELKGVTSIFAGPSGVGKSSLISKLTGV-----------------------ELRTGQ 189
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPEIKEMLKAN 270
VS K+ RG+HTTR V L+P GG++ D PGF++ L + ++ + FPE
Sbjct: 190 VSRKTERGRHTTREVRLIPFE-GGFIGDAPGFSRVDALNFMEREEVRLHFPEFGRY---- 244
Query: 271 EPAKCSFNNCLHLGEPGC-----VVKGD--WERYQYYFQLL 304
+C F++CLHL E GC V +G+ ER++ Y ++L
Sbjct: 245 ---QCRFSDCLHLEEEGCEVREAVKRGEIPCERFKSYLKML 282
>gi|226228257|ref|YP_002762363.1| putative ribosome biogenesis GTPase RsgA [Gemmatimonas aurantiaca
T-27]
gi|259495474|sp|C1ABL6.1|RSGA_GEMAT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|226091448|dbj|BAH39893.1| putative ribosome biogenesis GTPase RsgA [Gemmatimonas aurantiaca
T-27]
Length = 307
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 123/244 (50%), Gaps = 34/244 (13%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VAN+D +L++F+ +P P L RFLV AE+ G+ + +NK +LV EV +
Sbjct: 90 VANLDQVLVVFAAARPDPHPRMLDRFLVIAEANGLSARIVINKADLVSPEVSAALFADQM 149
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY S+ + GL++L + +++ + GPSGVGKSSL+NAL
Sbjct: 150 AAGYPVHHTSIHTGEGLEALRDEVEHRSSALSGPSGVGKSSLMNAL-------------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
F + D R VS +G+HTT L PL GG++ADTPG + L +
Sbjct: 196 -FPGL-------DLRTAAVSDAVNKGRHTTVGAMLHPLPHGGFIADTPGLREVGLWGIEA 247
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDE 306
+A FPE + +L A C F +C+H EPGC V+ GD RY+ Y +L DE
Sbjct: 248 GQVASCFPEFRPLLSA-----CRFADCIHTVEPGCAVREAVEAGDVSPGRYESYVKLRDE 302
Query: 307 IRIR 310
+ R
Sbjct: 303 LMGR 306
>gi|332653338|ref|ZP_08419083.1| ribosome small subunit-dependent GTPase A [Ruminococcaceae
bacterium D16]
gi|332518484|gb|EGJ48087.1| ribosome small subunit-dependent GTPase A [Ruminococcaceae
bacterium D16]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 145/302 (48%), Gaps = 42/302 (13%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+D +G C R L+ K LVGD+V +D + +G ++ + R + P VAN
Sbjct: 17 DDGSGTITACRGRGKLRHEKITPLVGDRVEFTPLD--NGQGALDAILPRKNQFARPAVAN 74
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+D L+++ S P +PF + R + AE + +NK +L L R G
Sbjct: 75 IDQLVIIASQSIPVTDPFLIDRVIAIAEGNHCESIVCVNKCDLASGAELAALYRR---AG 131
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S E+ G+D L + + + + G SGVGKSS++NAL E
Sbjct: 132 YQALEVSAETGEGIDQLKELISGKVSAFTGNSGVGKSSILNAL----------------E 175
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT---K 253
P + K GEVS K GRG+HTTRHV L+ LS GG +ADTPGF+ + K+ K
Sbjct: 176 PGIALK------TGEVSDKLGRGRHTTRHVELVRLSCGGVVADTPGFSSFDVDKMELCRK 229
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ LA F E + +C F +C H+ E GC V + R++ Y +L ++
Sbjct: 230 EELAGRFREFTPYVD-----RCQFQDCAHVKEKGCAVLAAVKAGEIAKSRHESYVRLYEQ 284
Query: 307 IR 308
+
Sbjct: 285 AK 286
>gi|268317257|ref|YP_003290976.1| ribosome small subunit-dependent GTPase A [Rhodothermus marinus DSM
4252]
gi|262334791|gb|ACY48588.1| ribosome small subunit-dependent GTPase A [Rhodothermus marinus DSM
4252]
Length = 319
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 128/248 (51%), Gaps = 37/248 (14%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSR 131
AN+D + ++ ++ P+ P + R LV AE IP L LNK++L+ EE ++ +
Sbjct: 95 ANIDFVWIVQAVHLPEPNPGFIDRVLVAAERYEIPAGLILNKIDLMTEEDRPAIDALEHL 154
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
GY L SV + GLD+L + LR +T+V+ GPSGVGKSSL+NA+
Sbjct: 155 YADLGYRVLRTSVVTGEGLDALREALRGKTSVVTGPSGVGKSSLLNAI------------ 202
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
EP L + R VS K+G+G+HTT +V+L PLS GG++ DTPG + + +
Sbjct: 203 ----EPDL------NIRTAPVSEKTGKGRHTTTYVALYPLSIGGFVVDTPGLREFGVTDL 252
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304
L+ F E + L A C F +C H EP C VK ERY Y +L
Sbjct: 253 EPAELSHYFVEFRPYLSA-----CRFPDCTHEHEPDCAVKAAVASGEISEERYYSYLNIL 307
Query: 305 DEIRIREE 312
+++ E+
Sbjct: 308 HSLKLGEK 315
>gi|407477611|ref|YP_006791488.1| ribosome biogenesis GTPase RsgA [Exiguobacterium antarcticum B7]
gi|407061690|gb|AFS70880.1| Ribosome biogenesis GTPase RsgA [Exiguobacterium antarcticum B7]
Length = 301
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 142/284 (50%), Gaps = 46/284 (16%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD+VV + G I V +R ++ PPVAN+D LL+ S +P L RF
Sbjct: 47 VVGDEVV---LHIESETGYILEVKERQNFLVRPPVANIDQALLVVSAAEPDFSAHLLDRF 103
Query: 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E+ I + L K++L+ + +N + GY + S E+ LG++ +
Sbjct: 104 LVLIEAKDIQPIIILTKMDLLQGKTAQEVNEAIAAYRKIGYHVVETSSETLLGVELVRPL 163
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+D+T+V+ G SGVGKSSL+NAL EP L + +S
Sbjct: 164 LKDKTSVLAGQSGVGKSSLLNAL----------------EPALALE------TSHISKSL 201
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV+L+PL G G +ADTPGF+ P +++ + L FPE +
Sbjct: 202 GRGRHTTRHVTLIPL-GEGLIADTPGFSNLDFPHEMEL--EELRWCFPEFVALQD----- 253
Query: 274 KCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C + CLHL EPGC VK E RY Y ++EI+ R
Sbjct: 254 DCKYRGCLHLNEPGCAVKVAMEAGEIMPSRYTNYGMFVEEIKNR 297
>gi|345302948|ref|YP_004824850.1| ribosome biogenesis GTPase RsgA [Rhodothermus marinus
SG0.5JP17-172]
gi|345112181|gb|AEN73013.1| ribosome biogenesis GTPase RsgA [Rhodothermus marinus
SG0.5JP17-172]
Length = 319
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 128/249 (51%), Gaps = 37/249 (14%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKS 130
AN+D + ++ ++ P+ P + R LV AE IP L LNK++L+ EE ++ +
Sbjct: 94 AANIDFVWIVQAVHLPEPNPGFIDRVLVAAERYEIPAGLILNKIDLMTEEDRPAIDALER 153
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY L SV + GLD+L + LR +T+V+ GPSGVGKSSL+NA+
Sbjct: 154 LYADLGYRVLRTSVVTGEGLDALREALRGKTSVVTGPSGVGKSSLLNAI----------- 202
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
EP L + R VS K+G+G+HTT +V+L PLS GG++ DTPG + +
Sbjct: 203 -----EPDL------NIRTAPVSEKTGKGRHTTTYVALYPLSIGGFVVDTPGLREFGVTD 251
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL 303
+ L+ F E + L A C F +C H EP C VK ERY Y +
Sbjct: 252 LEPAELSHYFVEFRPYLSA-----CHFPDCTHEHEPDCAVKAAVENGEISEERYYSYLNI 306
Query: 304 LDEIRIREE 312
L +++ E+
Sbjct: 307 LHSLKLGEK 315
>gi|425448232|ref|ZP_18828210.1| Putative ribosome biogenesis GTPase RsgA (fragment) [Microcystis
aeruginosa PCC 9443]
gi|389731037|emb|CCI04861.1| Putative ribosome biogenesis GTPase RsgA (fragment) [Microcystis
aeruginosa PCC 9443]
Length = 179
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 7/169 (4%)
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + K + L FPE+++
Sbjct: 15 NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-KCLPEQLTFYFPEVRQ 73
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGD 325
L C FN+C H EP CVV+GDWERYQ+Y + L+E RE+ +T + +E
Sbjct: 74 RLAL---GNCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--STKESS 128
Query: 326 VRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILD-ELDELDDDDNDD 373
++ K+ + G + EP+L KK+RR SR+ NQ E L D NDD
Sbjct: 129 LKLKIKEAGQETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDD 177
>gi|422809900|ref|ZP_16858311.1| Ribosome small subunit-stimulated GTPase EngC [Listeria
monocytogenes FSL J1-208]
gi|378751564|gb|EHY62152.1| Ribosome small subunit-stimulated GTPase EngC [Listeria
monocytogenes FSL J1-208]
Length = 291
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 140/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + + L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPEILQFCFPE 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
++ + + C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 238 ME-----DRRSGCKFRGCMHENEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
>gi|118444328|ref|YP_878311.1| ribosome-associated GTPase [Clostridium novyi NT]
gi|254766369|sp|A0Q109.1|RSGA_CLONN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|118134784|gb|ABK61828.1| ribosome-associated GTPase YjeQ [Clostridium novyi NT]
Length = 290
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 138/289 (47%), Gaps = 37/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K +VGD+V++ D + G IE + R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRNKKLTPMVGDRVIITPND--NNYGAIEEICTRDNYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL++ E I + NK++L + + + GY+ +F +
Sbjct: 82 LKNPDVNLDLLNKFLIQCELKNIKSIVCFNKIDLYGDYENHEAVKMVSDAGYDYIFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ LD L +L+ V GPSGVGKS+++N L +G + E
Sbjct: 142 EETNLDELKSKLKGNINVFCGPSGVGKSTILNKL-------------------VGKEVME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S + RGKHTTRH L+ ++ G++ DTPGF+ L +K+ L F E E
Sbjct: 183 ---TGIISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDLKFDSKEELKDYFREFYE 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+C FN CLH EP C VK + +RY++Y + L+EI
Sbjct: 239 Y-----KDQCKFNGCLHHKEPKCGVKDAVNNEEINKDRYEFYVKTLEEI 282
>gi|310828890|ref|YP_003961247.1| ribosome small subunit-dependent GTPase A [Eubacterium limosum
KIST612]
gi|308740624|gb|ADO38284.1| ribosome small subunit-dependent GTPase A [Eubacterium limosum
KIST612]
Length = 303
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 140/293 (47%), Gaps = 39/293 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C R + + K + +VGD V V D + I+ + R E + PPV+NVD L++
Sbjct: 36 LECKARGVFRHQKIKPMVGDFVEVVENDSDEL--AIDKIKPRKNEFVRPPVSNVDVALIV 93
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+ + P L + L+ +E + + + K +LV+ + L Y+
Sbjct: 94 FAGENPSPNLLLLDKLLIASEMKAVEPVICITKTDLVEADELQRIMDIYAKTPYKCFAFD 153
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ L + + + +T + GPSGVGKS+L N L +A ++
Sbjct: 154 QTDNIALQKIEREIAGKTAFLAGPSGVGKSTLANRL------CEAGAMET---------- 197
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLAQTFPE 262
GE+S K RGKHTTRHV LL L GGYL DTPGF+ L ++ K+ L FPE
Sbjct: 198 ------GELSQKLNRGKHTTRHVELLDLKVGGYLLDTPGFSSLKLDSEIEKEDLRFYFPE 251
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+E C F +CLH EPGCVVK E RY++Y LLDEI+
Sbjct: 252 FEE-------GSCRFASCLHQSEPGCVVKQQLEKGEISQVRYEHYSYLLDEIK 297
>gi|340751993|ref|ZP_08688803.1| ribosome biogenesis GTPase RsgA [Fusobacterium mortiferum ATCC
9817]
gi|229420960|gb|EEO36007.1| ribosome biogenesis GTPase RsgA [Fusobacterium mortiferum ATCC
9817]
Length = 268
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 134/283 (47%), Gaps = 41/283 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R +LK+ + + D VVG I + I NV +R + P VAN+D+L++ F+
Sbjct: 1 MRGILKRKESK----DNCVVGDIVEISEDNYIINVEERKNLVERPLVANIDYLVIQFAGK 56
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFCSV 144
P ++ L L+ + I + +NK++L+ E L K L + + S
Sbjct: 57 DPDIDYERLNILLLRSFYYKIKPVIIINKIDLLSAEELEEVKKNLEFLNKLDIKYFLISQ 116
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L L+D+ T GPSGVGKSS+IN L++
Sbjct: 117 KENIGIEELKVFLKDKITAFGGPSGVGKSSIINLLQNEKKLE------------------ 158
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPEI 263
GE S + RGKHTT+ +LL L GGGY+ DTPGF+ L + Q L FPE
Sbjct: 159 ----TGETSKRLRRGKHTTKDTNLLELIGGGYIIDTPGFSSVELPDIKDAQELIALFPEF 214
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWERYQYYF 301
C FNNCLHL EP C +K G+ ER +Y F
Sbjct: 215 ------TNRGNCKFNNCLHLNEPSCAIKNSVGEGEIERSRYNF 251
>gi|392394781|ref|YP_006431383.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525859|gb|AFM01590.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 297
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 142/297 (47%), Gaps = 46/297 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQEFLPGDRVKI--LPGTGNKGTIEEVETRRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL--------HTWGY 137
P + L R +V+ ++ I + LNK++L E NT + GY
Sbjct: 83 CVSPTPDLNLLDRLIVQVAASQIKPIIILNKIDLGSLEEKNTAGNTFPADGLDFYRELGY 142
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E + S ++ GL L + + + V+ GPSGVGKSSL+NAL SP
Sbjct: 143 ELVKVSTKTGEGLAELQEHINGKVNVLAGPSGVGKSSLVNAL--SPGL------------ 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 189 --------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPHMKREELT 239
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
F E + + +C F +C H EP C VK E RY++Y Q L+E+
Sbjct: 240 DYFREFQ------DAGECRFADCQHHKEPNCAVKAAMEAGEIQQSRYEHYCQFLEEV 290
>gi|323487015|ref|ZP_08092327.1| hypothetical protein HMPREF9474_04078 [Clostridium symbiosum
WAL-14163]
gi|323692057|ref|ZP_08106304.1| ribosome small subunit-dependent GTPase A [Clostridium symbiosum
WAL-14673]
gi|355630341|ref|ZP_09050800.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
7_3_54FAA]
gi|323399663|gb|EGA92049.1| hypothetical protein HMPREF9474_04078 [Clostridium symbiosum
WAL-14163]
gi|323503857|gb|EGB19672.1| ribosome small subunit-dependent GTPase A [Clostridium symbiosum
WAL-14673]
gi|354818689|gb|EHF03156.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
7_3_54FAA]
Length = 292
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 133/290 (45%), Gaps = 34/290 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V +D + G I+ + R +++ P V+NVD +++F+
Sbjct: 25 CKAKGVFRNRNIKPLVGDDVEFMVLDEKEGTGNIDAILPRKNKLIRPAVSNVDQAVVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ + NK++L + + ++ GY F S
Sbjct: 85 VTEPLPNLNLLDRFLVMMERQEIPVIICFNKIDLSGGKEIEELRAIYGPAGYTLHFISTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GL+ L + + +TTV+ GPSGVGKSS+ N L+ P A
Sbjct: 145 EAAGLEKLHELIAGKTTVLAGPSGVGKSSITNFLQ--PEAR------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G VS K RGKHTTRH L + G Y+ DTPGF+ + + L FPE E
Sbjct: 184 -METGVVSEKIKRGKHTTRHSELFFVENGTYMMDTPGFSSMYIEDLEPNELKDYFPEFSE 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308
+C F C+H+GE C VK RY Y L E++
Sbjct: 243 Y-----EEECRFLGCIHVGEKVCGVKTAVADGKISRSRYDNYLLLYQELK 287
>gi|83589764|ref|YP_429773.1| GTPase EngC [Moorella thermoacetica ATCC 39073]
gi|123725738|sp|Q2RK09.1|RSGA_MOOTA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|83572678|gb|ABC19230.1| GTPase EngC [Moorella thermoacetica ATCC 39073]
Length = 290
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 37/293 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + G+IE++ R T + P VANV+ ++++F+
Sbjct: 24 CRLRGRFRLQETVFLPGDRVEIKPVGPGE--GVIEDLKPRRTCLKRPAVANVEQVIIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L R L + I + NK ++ +E GY L S
Sbjct: 82 LREPPPDLELLDRLLFLSGVEDIEAVIVWNKADISKQEYAGL-PELYRQIGYRNLITSAH 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L L + + GPSGVGKSSL+NA+ +P L
Sbjct: 141 TGQGIDELKALLAGRLSTFAGPSGVGKSSLLNAI----------------QPGL------ 178
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ R GEVS+K GRG+HTTR L+ L GG++ADTPGF++ L +T++ +A FPE++
Sbjct: 179 NLRTGEVSSKGGRGRHTTRQAELIRLPDGGWVADTPGFSRLDLPAITREEVAAYFPEMEP 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+ +C + +CLH EPGC V E RY++Y L E+ RE
Sbjct: 239 LR-----GRCRYASCLHRKEPGCAVVAAVEAGLIIKHRYEHYLTFLAEVIARE 286
>gi|55670093|pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
gi|55670094|pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
gi|55670095|pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 40/315 (12%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
R IV + + +++TG +LC +R + ++ VGD+V + G+IEN
Sbjct: 12 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIEN 69
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
V R + P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L D
Sbjct: 70 VLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129
Query: 122 EEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
E+ L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 189
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
G K RV EVS K RG+HTT LL GGY+ D
Sbjct: 190 NP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 227
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE---- 295
TPGF + + + L F E + +C F++C H+ EP C VK E
Sbjct: 228 TPGFANLEINDIEPEELKHYFKEFGD-------KQCFFSDCNHVDEPECGVKEAVENGEI 280
Query: 296 ---RYQYYFQLLDEI 307
RY+ Y ++ E+
Sbjct: 281 AESRYENYVKMFYEL 295
>gi|15644464|ref|NP_229516.1| hypothetical protein TM1717 [Thermotoga maritima MSB8]
gi|38257793|sp|Q9X242.1|RSGA_THEMA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|4982294|gb|AAD36783.1|AE001811_3 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 295
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 40/315 (12%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
R IV + + +++TG +LC +R + ++ VGD+V + G+IEN
Sbjct: 6 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIEN 63
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
V R + P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L D
Sbjct: 64 VLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 123
Query: 122 EEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
E+ L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 124 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
G K RV EVS K RG+HTT LL GGY+ D
Sbjct: 184 NP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 221
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE---- 295
TPGF + + + L F E + +C F++C H+ EP C VK E
Sbjct: 222 TPGFANLEINDIEPEELKHYFKEFGD-------KQCFFSDCNHVDEPECGVKEAVENGEI 274
Query: 296 ---RYQYYFQLLDEI 307
RY+ Y ++ E+
Sbjct: 275 AESRYENYVKMFYEL 289
>gi|418045775|ref|ZP_12683870.1| ribosome biogenesis GTPase RsgA [Thermotoga maritima MSB8]
gi|351676660|gb|EHA59813.1| ribosome biogenesis GTPase RsgA [Thermotoga maritima MSB8]
Length = 293
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 40/315 (12%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
R IV + + +++TG +LC +R + ++ VGD+V + G+IEN
Sbjct: 4 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIEN 61
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
V R + P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L D
Sbjct: 62 VLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 121
Query: 122 EEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
E+ L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 122 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 181
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
G K RV EVS K RG+HTT LL GGY+ D
Sbjct: 182 NP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 219
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE---- 295
TPGF + + + L F E + +C F++C H+ EP C VK E
Sbjct: 220 TPGFANLEINDIEPEELKHYFKEFGD-------KQCFFSDCNHVDEPECGVKEAVENGEI 272
Query: 296 ---RYQYYFQLLDEI 307
RY+ Y ++ E+
Sbjct: 273 AESRYENYVKMFYEL 287
>gi|313894776|ref|ZP_07828336.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320530192|ref|ZP_08031262.1| ribosome small subunit-dependent GTPase A [Selenomonas artemidis
F0399]
gi|402303124|ref|ZP_10822222.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC9]
gi|312976457|gb|EFR41912.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320137625|gb|EFW29537.1| ribosome small subunit-dependent GTPase A [Selenomonas artemidis
F0399]
gi|400379354|gb|EJP32198.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC9]
Length = 290
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 137/297 (46%), Gaps = 38/297 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C +R +KK + + +V + + G++E + R + P VAN+ +++
Sbjct: 24 VACKLRGKMKKGRSDTGIVPGDIVTFVRMNEEEGIVERIDARQNLLARPRVANLTQIVVT 83
Query: 84 FSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ P P ++RFLV AE +G+ + L +NK +L +V T + GY L
Sbjct: 84 IAAVAPDPHPLVVSRFLVLAERSGVRKIVLCINKTDLYRGDV-RTLAADYTAAGYPVLCT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G+ +L L + TV GPSG GKSSL+NA+ SS +
Sbjct: 143 SAQTGEGIAALRDCLAGEITVFAGPSGTGKSSLLNAVDSSLSLA---------------- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRG+HTTR L+P + GY+ DTPGF Q L +T L FPE
Sbjct: 187 ------TGTVSEKIGRGRHTTRRAELIPYA-DGYVVDTPGFTQQDLSDLTPAELTACFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C F C H EP C VK E RY+ Y LL+EIR + +
Sbjct: 240 FAGH------TCCRFAPCSHSHEPDCAVKAAVEAGAVSRARYEAYAALLNEIRTKRK 290
>gi|345859742|ref|ZP_08812076.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus sp.
OT]
gi|344327199|gb|EGW38643.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus sp.
OT]
Length = 295
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 44/295 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V R + P +ANVD LL+F+
Sbjct: 25 CSLRGRFRVKDQDFLPGDRVRI--LPEEGDKATIEAVEPRRNALSRPVIANVDQALLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR------LHTWGYEP 139
M PK + L R L++ GI + K++ E L T GY
Sbjct: 83 MTSPKPDLNLLDRLLIQVTEAGIEPIIVFTKLDKY-EAALTTGAEEPSITDVYRQIGYTV 141
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S E+ G++ + +L D+ +V+ GPSG GKSSL NAL SP
Sbjct: 142 FEVSNETGQGIEEVRAQLVDKVSVLAGPSGAGKSSLFNAL--SP---------------- 183
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G K + GE+S KS RG+HTTRHV L+ + GG +ADTPGF+ L + + LA
Sbjct: 184 GKKL----KTGEISLKSKRGRHTTRHVELM-VCAGGLVADTPGFSSLFLPPMKRAELAGC 238
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE + + C FN+CLH EP C +K E RY++Y L E+
Sbjct: 239 FPEF-----IDRRSSCRFNSCLHDKEPNCAIKAALENGEISAGRYEHYLIFLQEV 288
>gi|404404684|ref|ZP_10996268.1| GTPase RsgA [Alistipes sp. JC136]
Length = 305
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 147/307 (47%), Gaps = 51/307 (16%)
Query: 21 GVELLCVVRALLKKIKRR----VLVGDKVVVGS-------IDWVDRRGMI---ENVFQRS 66
GV L C +R L+ R V+VGD+VV S +D RR + + +
Sbjct: 23 GVTLRCRIRGKLRLKGVRSTNPVVVGDEVVCESEGGDCVIVDIEPRRNYVIRRASNLSKE 82
Query: 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN 126
+ I+ ANVD LL+ ++ P+ RFLV E+ +P T+ L+K++L D E +
Sbjct: 83 SHII---AANVDQALLMVTLRSPETPKEFADRFLVTCEAYKVPATILLSKIDLQDAETVA 139
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+++ GY L S + G++ + + L +TT++ G SGVGKS+LI A+
Sbjct: 140 GFRAVYEGAGYRVLEVSAKEGRGVEEVRELLAGRTTLVSGNSGVGKSTLIQAI------- 192
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+P L D R GE+S +G+HTT ++ PL+ GG + DTPG
Sbjct: 193 ---------DPSL------DIRTGEISDSHHKGRHTTTFSTMYPLAEGGAVIDTPGIKGF 237
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGD--WERYQY 299
LL + L FPE+ + C F NC H EPGC V G+ W RY+
Sbjct: 238 GLLDIDDAELWHYFPEMMRVAPG-----CRFYNCTHTHEPGCAVVEAVEAGEIAWSRYES 292
Query: 300 YFQLLDE 306
Y ++LD+
Sbjct: 293 YLKILDD 299
>gi|403253348|ref|ZP_10919649.1| hypothetical protein EMP_06212 [Thermotoga sp. EMP]
gi|402810882|gb|EJX25370.1| hypothetical protein EMP_06212 [Thermotoga sp. EMP]
Length = 293
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 154/320 (48%), Gaps = 50/320 (15%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV-----VGSIDWVDRR 56
R IV + + +++TG +LC +R + ++ VGD+V GS
Sbjct: 4 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDGTGS------- 56
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G+IENV R + P VANVD ++L+ ++ P+ + + +FLV AE + + +NK
Sbjct: 57 GVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINK 116
Query: 117 VELVDEEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
++L DE+ L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSS
Sbjct: 117 MDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSS 176
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
L+NA+ G K RV EVS K RG+HTT LL G
Sbjct: 177 LLNAINP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFG 214
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294
GY+ DTPGF + + + L F E + +C F++C H+ EP C VK
Sbjct: 215 GYVVDTPGFANLEINDIEPEELKHYFKEFGD-------KQCFFSDCNHVDEPECGVKEAV 267
Query: 295 E-------RYQYYFQLLDEI 307
E RY+ Y ++ E+
Sbjct: 268 ENGEIAESRYENYVKMFYEL 287
>gi|320159690|ref|YP_004172914.1| GTPase EngC [Anaerolinea thermophila UNI-1]
gi|319993543|dbj|BAJ62314.1| GTPase EngC [Anaerolinea thermophila UNI-1]
Length = 306
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 49/284 (17%)
Query: 42 GDKVVVGSIDWV----DRRGMIENVFQRSTEI--LDPP---------VANVDHLLLLFSM 86
GD + VG + D G+IE + R +E+ +DP +AN+D ++ +F+
Sbjct: 44 GDVISVGDCVQILPLSDGTGVIEVIEPRHSELVRMDPRPRGEYRQILLANIDQIVAVFAC 103
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146
P+ L RFLV AE GIP + NKV+LV E GY ++ SV
Sbjct: 104 ANPEPRLRMLDRFLVIAEKQGIPAVIIANKVDLVGMERARELFGMYPPLGYPVIYTSVRQ 163
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+GLD + + LR + T + GPSGVGKSSL+NA++ PH A
Sbjct: 164 GVGLDEVRECLRGKITGLAGPSGVGKSSLLNAIQ--PHLGLA------------------ 203
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
V EVS SG+G+HTT L L GGY+AD PG +L + L FPE+++
Sbjct: 204 --VREVSEASGKGRHTTVVRQLFRLEMGGYVADLPGLRALALWDTQPEELDGYFPELRDR 261
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ A+C F++C H EPGC V E RY+ Y ++
Sbjct: 262 V-----AQCQFSDCTHTTEPGCAVLAALERGEIHPARYESYLRM 300
>gi|358067535|ref|ZP_09154013.1| ribosome small subunit-dependent GTPase A [Johnsonella ignava ATCC
51276]
gi|356694188|gb|EHI55851.1| ribosome small subunit-dependent GTPase A [Johnsonella ignava ATCC
51276]
Length = 289
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 36/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + L ++ + LVGD +D + G I N+ R E+L P AN+D +L + S
Sbjct: 24 CRAKGLFRRNDIKPLVGDNAEFEILDAAGKNGNIINILPRKNELLRPAAANIDIILTVLS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK + L ++L+ + G + NK +L + + + GYE + S
Sbjct: 84 FFKPKPQLCMLDKYLISIKLQGFDAAILWNKNDLSPD--IPDYVKAYKRAGYENIVISAS 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ L L+ +TT+ GPSGVGKSS+ N R P A
Sbjct: 142 DGYGMEDLRAFLKGKTTLFAGPSGVGKSSITN--RLFPMA-------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
D + GE+S K RGKHTTRH + + + DTPGF SL + K+SL + +PE +
Sbjct: 180 DMQTGEISRKIERGKHTTRHSQVFIVDKTTCIFDTPGFTSVSLEGLEKESLREYYPEFTK 239
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
K KC F C H+ EPGC VK + RY Y ++ +E+
Sbjct: 240 PGK-----KCRFALCSHISEPGCAVKQALDDNTVSRLRYDNYVKIYNEL 283
>gi|262281834|ref|ZP_06059603.1| ribosome-associated GTPase [Streptococcus sp. 2_1_36FAA]
gi|262262288|gb|EEY80985.1| ribosome-associated GTPase [Streptococcus sp. 2_1_36FAA]
Length = 292
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 139/298 (46%), Gaps = 45/298 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGDKV + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDKVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E GI L ++K++L++ E L+ + T GY+ +
Sbjct: 84 EPDFNPNLLDRFLVLLEHKGIHPILYISKLDLLERENELDEFLQVYRTIGYDVV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 138 -QNVEELLPLLADKITVFMGQTGVGKSTLLNKI--------APDL--------------R 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRT 317
K C F C H EP C VK E R+ Y Q L EI R E +T
Sbjct: 234 SKF-----CKFRTCTHTHEPNCAVKPAVESSRIATFRFDNYLQFLSEIENRRETYKKT 286
>gi|257066172|ref|YP_003152428.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
DSM 20548]
gi|256798052|gb|ACV28707.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
DSM 20548]
Length = 290
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 41/316 (12%)
Query: 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 63
I++ + DCN K L+ R + K + LVGD VV+ D DR+ I +
Sbjct: 6 IIKAQKELYYVDCNGKI---LMAKARGNFRVKKIKPLVGDNVVID--DLEDRKAYITEIL 60
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R EI P ++N+D +LL ++ P L + L ++L E + + + L+K++L DE
Sbjct: 61 PRKNEIKRPNISNIDQILLFATIKDPILNLYNLDKYLAMCEYKDMDVVIVLSKIDLCDEN 120
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ +++ GY+ + + +L L+++T+ + G SGVGKS+ +N L
Sbjct: 121 EVKDFENIYENIGYKLISLDNFDNFPKEKILDILKNKTSAVSGASGVGKSTFLNNL---- 176
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+D E G +S KS RGK+TTRH + + +L DTPGF
Sbjct: 177 -------IDIEVE------------TGSISEKSKRGKNTTRHTEIFKIGDESFLFDTPGF 217
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWER 296
+ + + E+K + + +C F +C H+ EP C VK R
Sbjct: 218 DSFDI------DFIEDEKELKYLFREFRDKRCKFKDCNHINEPACGVKSYLADGLISKSR 271
Query: 297 YQYYFQLLDEIRIREE 312
Y Y L +E++ R E
Sbjct: 272 YDNYLMLFEEVKKRRE 287
>gi|407716820|ref|YP_006838100.1| ribosome small subunit-dependent GTPase A [Cycloclasticus sp. P1]
gi|407257156|gb|AFT67597.1| Ribosome small subunit-dependent GTPase A [Cycloclasticus sp. P1]
Length = 309
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 163/327 (49%), Gaps = 68/327 (20%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV---DRRGM 58
+ ++ + E RT+ C +T ++ + VGD V +W+ D G
Sbjct: 28 KALIVEDEQGRTARCKKRTQLQ--------------QPAVGDYV-----EWIKTEDDAGR 68
Query: 59 IENVFQRSTEILDP-------PVA-NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPL 110
+ENV +R + + P PVA N+D ++++ ++ +P ++P L ++L+ E I
Sbjct: 69 VENVLERRSLLSRPAKNGQTRPVAANLDQIVIIIAV-KPTIDPLLLDQYLIVCEFQEIKP 127
Query: 111 TLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGP 167
+ LNKV+L+DE + + + YE + S K GLD L +RL+++T+++VG
Sbjct: 128 LIVLNKVDLLDEGSRKSTDELILLYRNLSYEVIEVSAVEKSGLDKLRKRLKNETSILVGQ 187
Query: 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227
SGVGKS++ N+L P L D + +ST SG GKHTT +
Sbjct: 188 SGVGKSTITNSLL----------------PDL------DLQTKALSTASGLGKHTTTSST 225
Query: 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287
L L GG + D+PG N L +T+Q+LA + EIK + C ++NCLHL EP
Sbjct: 226 LYKLPEGGDIIDSPGVNIFGLAHITEQNLAYGYREIKHL-----AEHCKYSNCLHLKEPK 280
Query: 288 CVVK-----GDW--ERYQYYFQLLDEI 307
C VK GD +RY Y +L D++
Sbjct: 281 CAVKDAVETGDVSKKRYLRYLKLRDKL 307
>gi|402574133|ref|YP_006623476.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
meridiei DSM 13257]
gi|402255330|gb|AFQ45605.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
meridiei DSM 13257]
Length = 296
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 140/295 (47%), Gaps = 43/295 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + + GD+V + + + + IE+V R + P +ANVD +L+F+
Sbjct: 25 CSLRGRFRVKDQDFIPGDRVNI--LPEQEDKATIESVITRRNVLSRPTIANVDQAILVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL------HTWGYEP 139
M PK + L R L++ I + K++ EE K L GY
Sbjct: 83 MTSPKPDLNLLDRLLIQVTDAEIEPIIVFTKLDKYKEESGTAPKEGLKITDVYRNIGYTV 142
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S ++ G+ + RL ++ +V+ GPSG GKSSL NAL SP
Sbjct: 143 FEVSSKTGQGIADIAVRLTNKISVLAGPSGAGKSSLFNAL--SPGI-------------- 186
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S KS RG+HTTRHV L+ S GG +ADTPGF+ L ++ + LA
Sbjct: 187 ------QLKTGEISNKSKRGRHTTRHVELMVCS-GGLVADTPGFSSLFLPEMKRAELADC 239
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE ++ N+ C FN+CLH EP C +K E RY +Y L E+
Sbjct: 240 FPEFA--IRRNQ---CRFNSCLHDKEPNCAIKAALETGEISPIRYDHYLIFLKEV 289
>gi|392963909|ref|ZP_10329330.1| ribosome small subunit-dependent GTPase A [Fibrisoma limi BUZ 3]
gi|387846804|emb|CCH51374.1| ribosome small subunit-dependent GTPase A [Fibrisoma limi BUZ 3]
Length = 308
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 141/292 (48%), Gaps = 47/292 (16%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLL 83
K+ + VGD+V D + +I ++ R I+ V AN+D ++L
Sbjct: 38 KVTNPIAVGDRVQFEVEDETENTAVITDIEPRENYIIRQSVHKTAHGHILAANIDQAVML 97
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL 140
++ P+ + RFLV AES IP TL NK +++ +E L + + + GYE L
Sbjct: 98 VTLALPRTSLGFIDRFLVTAESFRIPTTLVFNKTDILSDEGLAYQQEIMTLYESIGYECL 157
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S G+D+ Q L + T++ G SGVGKSSL+NA+ +P+
Sbjct: 158 ATSATEGQGVDAFRQLLDHKITLLSGHSGVGKSSLVNAI--APNL--------------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ R EVST + +G HTT + L+ Y+ DTPG + L + K+ ++ F
Sbjct: 201 -----NLRTSEVSTFANKGVHTTTFAEMFELAPDTYIIDTPGIKELGLADMEKEEISHYF 255
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLD 305
PE+++ L +C F+NCLHL EPGC VK GD RY Y +++
Sbjct: 256 PEMRDRLN-----QCRFHNCLHLNEPGCAVKDAVGEGDIAETRYMSYLSMIE 302
>gi|373454498|ref|ZP_09546364.1| ribosome small subunit-dependent GTPase A [Dialister
succinatiphilus YIT 11850]
gi|371935773|gb|EHO63516.1| ribosome small subunit-dependent GTPase A [Dialister
succinatiphilus YIT 11850]
Length = 288
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 140/295 (47%), Gaps = 38/295 (12%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LC R LK+ + +LVGD V + + + +I +V+ R T + PP AN+D L
Sbjct: 21 GALSLCRSRGRLKR-RTDILVGDYVDFETGNSGET--VITHVYPRKTVLYRPPSANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+L+ ++ P L F + + +V AE G+ + +NK +L DE + GY
Sbjct: 78 VLVSAVRTPDLNLFLMDKMVVMAEEAGVEPLIVINKADL-DEAGAEKAVTYYRKAGYSAF 136
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ GL+ L L+ GPSGVGKS+L+N ILG
Sbjct: 137 SLSLLHDEGLEELTSALKGPIIAFSGPSGVGKSTLLNR-------------------ILG 177
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
F GEVS +GRGK+TTRH L+ +L DTPG+ + ++ L+ F
Sbjct: 178 KSHFLS---GEVSRHTGRGKNTTRHAELIQWKDRRFLMDTPGYTYLDIDRIEGNHLSYLF 234
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+ + L KC FN+C+H EP C V+ + RYQ Y ++LDEIR
Sbjct: 235 RDFRPFL-----GKCRFNDCIHSKEPDCAVRQAVDEGLIQQRRYQSYLEILDEIR 284
>gi|419799769|ref|ZP_14325093.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0449]
gi|385697152|gb|EIG27599.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0449]
Length = 292
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVEREEIATFRYEDYLQFLSEIENRRE 281
>gi|170288908|ref|YP_001739146.1| ribosome small subunit-dependent GTPase A [Thermotoga sp. RQ2]
gi|170176411|gb|ACB09463.1| ribosome small subunit-dependent GTPase A [Thermotoga sp. RQ2]
Length = 293
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 40/300 (13%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 19 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + NK++L DE L + +++
Sbjct: 77 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYDEADLKKVRELEEIYS 136
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 137 ELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINP------------- 183
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 184 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEISDIEPE 234
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L F E + +C F++C H+ EP C VK E RY+ Y ++ E+
Sbjct: 235 ELKNYFKEFGD-------KQCFFSDCNHVDEPDCGVKEAVENGEIAESRYENYVKMFYEL 287
>gi|157149972|ref|YP_001449517.1| ribosome-associated GTPase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157074766|gb|ABV09449.1| predicted ribosome small subunit-dependent GTPase A [Streptococcus
gordonii str. Challis substr. CH1]
Length = 292
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 142/298 (47%), Gaps = 45/298 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E GI L ++K++L++ E L+ + T GY+ +V+S
Sbjct: 84 EPDFNPNLLDRFLVLLEHKGIHPILYISKLDLLERENELDEFLQVYRTIGYD----AVQS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 140 ---VEELLPLLADKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI +
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIADF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRT 317
K C F C H EP C VK E R+ Y Q L EI R E +T
Sbjct: 234 SKF-----CKFRTCTHTHEPNCAVKPAVESGQIAAFRFDNYLQFLSEIENRRETYKKT 286
>gi|163846820|ref|YP_001634864.1| ribosome small subunit-dependent GTPase A [Chloroflexus aurantiacus
J-10-fl]
gi|222524641|ref|YP_002569112.1| ribosome small subunit-dependent GTPase A [Chloroflexus sp.
Y-400-fl]
gi|163668109|gb|ABY34475.1| ribosome small subunit-dependent GTPase A [Chloroflexus aurantiacus
J-10-fl]
gi|222448520|gb|ACM52786.1| ribosome small subunit-dependent GTPase A [Chloroflexus sp.
Y-400-fl]
Length = 324
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 53/306 (17%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQ------------RSTE 68
L C +R LKK ++ V++GD+V V + + +G IE V R
Sbjct: 43 LECRLRGRLKKERQATDLVVIGDQVEVMPVG--NGQGAIEAVLPRRSRLARRAAGPRGAY 100
Query: 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D VANVD +LL+FS +P+ P L R+LV E + +P+ + K++LV +
Sbjct: 101 KEDVIVANVDQVLLVFSCTKPEFTPRMLDRYLVICEHSELPVVIVATKIDLVVQHAAEAM 160
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
S GY + S+ S G+ L +L + +V+ G SGVGKSSL+NA+
Sbjct: 161 FSPYARIGYPVFYTSIVSGEGIAELRSQLAGRISVVTGKSGVGKSSLLNAI--------- 211
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYLADTPGFNQP 246
+P L + R GE+S + +G+HTT L+P L GGGY+ADTPG +
Sbjct: 212 -------QPGL------NLRTGEISERLTKGRHTTTVAELIPLDLPGGGYVADTPGIREI 258
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQY 299
L V ++ LA F E + L C F C HL EP C V+ E RY
Sbjct: 259 GLWNVPERDLAWCFREFRPFLD-----DCYFAGCTHLHEPHCAVRAAVERGDITAARYDS 313
Query: 300 YFQLLD 305
Y +L++
Sbjct: 314 YARLME 319
>gi|422413363|ref|ZP_16490322.1| ribosome small subunit-dependent GTPase A, partial [Listeria
innocua FSL S4-378]
gi|313618297|gb|EFR90350.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
S4-378]
Length = 248
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 40/265 (15%)
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G I +V R ++ PPVAN+D +L+FS +P RFLV E I + ++K
Sbjct: 11 GYILDVLSRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIQPVICISK 70
Query: 117 VEL---VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKS 173
++L ++E + +K T GY+ + E +++ + +T VI G SGVGKS
Sbjct: 71 MDLATDAEKEQIAIYKEVYETIGYDVFVTNDEPD--KEAIKDYISGKTAVIAGQSGVGKS 128
Query: 174 SLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233
+L+N+L S + E+S GRGKHTTRHV L+P+ G
Sbjct: 129 TLLNSLNSDLTL----------------------KTAEISNSLGRGKHTTRHVELMPI-G 165
Query: 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293
G++ADTPGF+ + ++L FPE++ + + C F C+H EP C VK
Sbjct: 166 DGFVADTPGFSSIEWDDLQPETLQFCFPEME-----DRRSGCKFRGCMHDNEPNCAVKTA 220
Query: 294 WE-------RYQYYFQLLDEIRIRE 311
E RY++Y Q+L E++ R+
Sbjct: 221 VEANEIADFRYKHYIQILQELKNRK 245
>gi|281412511|ref|YP_003346590.1| ribosome small subunit-dependent GTPase A [Thermotoga naphthophila
RKU-10]
gi|281373614|gb|ADA67176.1| ribosome small subunit-dependent GTPase A [Thermotoga naphthophila
RKU-10]
Length = 293
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 40/315 (12%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
R IV + + +++TG +LC +R + ++ VGD+V + G+IEN
Sbjct: 4 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIEN 61
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
V R + P VANVD ++L+ ++ P+ + + +FLV AE + + NK++L D
Sbjct: 62 VLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYD 121
Query: 122 EEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
E L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 122 EADLKKVRELEEIYSELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 181
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
G K RV EVS K RG+HTT LL GGY+ D
Sbjct: 182 NP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 219
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE---- 295
TPGF + + + L F E + +C F++C H+ EP C VK E
Sbjct: 220 TPGFANLEISDIEPEELKNYFKEFGD-------KQCFFSDCNHVDEPDCGVKEAVENGEI 272
Query: 296 ---RYQYYFQLLDEI 307
RY+ Y ++ E+
Sbjct: 273 AESRYENYVKMFYEL 287
>gi|400290874|ref|ZP_10792901.1| ribosome-associated GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921665|gb|EJN94482.1| ribosome-associated GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 290
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 143/302 (47%), Gaps = 45/302 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K R VGD+V + + + G I + +R ++ PP+ NVD +++ S
Sbjct: 26 ARGNFRKKGHRPYVGDEVDFSAEEHSE--GYILAIHERKNSLIRPPIVNVDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L L RFL+ E I + ++K++L+ D LN K + GY+ ++
Sbjct: 84 EPDLNINLLDRFLILLEHKNIKPLIYISKLDLLKDLSCLNVIKEQYQQIGYQVIY----- 138
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L LL L+D+ TV +G +GVGKS+L+N + A D+ +
Sbjct: 139 --HLSELLPLLKDKITVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + ++L FPE +
Sbjct: 175 LETAEISDSLGRGRHTTRAVTLYNVHGGK-IADTPGFSSLDYEITSSEALNAAFPEFLRL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------W-ERYQYYFQLLDEIRIREEFQLRTFG 319
A C F +C H EP C VK W ERYQ+Y Q L EI R E +T
Sbjct: 234 SSA-----CKFRSCTHTHEPDCAVKEAVEQKVIWQERYQHYLQFLSEIENRRETYKKTIK 288
Query: 320 TK 321
K
Sbjct: 289 RK 290
>gi|336400752|ref|ZP_08581525.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 21_1A]
gi|336161777|gb|EGN64768.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 21_1A]
Length = 297
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 141/293 (48%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG--YEPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEENKISKDRYDFYKKTLE 287
>gi|260494590|ref|ZP_05814720.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_33]
gi|260197752|gb|EEW95269.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_33]
Length = 297
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 141/293 (48%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG--YEPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEENKISKDRYDFYKKTLE 287
>gi|148270147|ref|YP_001244607.1| ribosome small subunit-dependent GTPase A [Thermotoga petrophila
RKU-1]
gi|254766842|sp|A5ILF8.1|RSGA_THEP1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|147735691|gb|ABQ47031.1| ribosome small subunit-dependent GTPase A [Thermotoga petrophila
RKU-1]
Length = 295
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 40/315 (12%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
R IV + + +++TG +LC +R + ++ VGD+V + G+IEN
Sbjct: 6 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIEN 63
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
V R + P VANVD ++L+ ++ P+ + + +FLV AE + + NK++L D
Sbjct: 64 VLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYD 123
Query: 122 EEVLNTWK--SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
E L + +++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 124 EADLKKVRELEEIYSELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
G K RV EVS K RG+HTT LL GGY+ D
Sbjct: 184 NP------------------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 221
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE---- 295
TPGF + + + L F E + +C F++C H+ EP C VK E
Sbjct: 222 TPGFANLEISDIEPEELKNYFKEFGD-------KQCFFSDCNHVDEPDCGVKEAVENGEI 274
Query: 296 ---RYQYYFQLLDEI 307
RY+ Y ++ E+
Sbjct: 275 AESRYENYVKMFYEL 289
>gi|225181334|ref|ZP_03734778.1| ribosome small subunit-dependent GTPase A [Dethiobacter
alkaliphilus AHT 1]
gi|225167915|gb|EEG76722.1| ribosome small subunit-dependent GTPase A [Dethiobacter
alkaliphilus AHT 1]
Length = 276
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 145/299 (48%), Gaps = 39/299 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R KK + GD+V + + G++E V R + ++ PPVANVD +
Sbjct: 6 GAVVRCRARGRFKKEGTTIHAGDRVRFTFLSETE--GVLEEVKPRESFLVRPPVANVDQV 63
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ + P L L R LV AES + + +NK +L D+E + + GY
Sbjct: 64 MIVCAPQDPPLSLQLLDRLLVLAESQRLRSVICMNKDDLPHDKE--SALRDLYGGAGYTV 121
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
LF S G++ Q+L + TV+ GPSGVGKSSL+N + +P L
Sbjct: 122 LFTSALYGQGIEDAKQQLCKRITVLAGPSGVGKSSLLNRI----------------QPGL 165
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
K E+S KS RG+HTTRHV LL L GG +AD+PGF+Q L V + L
Sbjct: 166 QLK------TAEISEKSKRGRHTTRHVELLTLDCGGLVADSPGFSQLDLSGVASEELPFF 219
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
FPE ++ +C F +C H EP C VK E RY Y L+E+ +E
Sbjct: 220 FPEFQDF-----SPQCRFKSCKHYNEPDCAVKDALERGEIASSRYNNYLVFLEEVMAQE 273
>gi|334128600|ref|ZP_08502483.1| ribosome small subunit-dependent GTPase A [Centipeda periodontii
DSM 2778]
gi|333386691|gb|EGK57901.1| ribosome small subunit-dependent GTPase A [Centipeda periodontii
DSM 2778]
Length = 291
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 142/299 (47%), Gaps = 42/299 (14%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
L C +R +KK + ++ GD V I + G+IE + R+ + P VAN+ ++
Sbjct: 25 LFCKLRGRVKKGRSDMGLVPGDIVTFERISAGE--GVIERIEARTNLLQRPRVANLTQIV 82
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G+ + L +NK++L + ++ + GY L
Sbjct: 83 ITVAAASPDPHPLVVSRFLVLAELSGVKKIVLCVNKMDLCTGDP-ASYLAEYEAAGYSVL 141
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S GLD L L + +V+ GPSG GKSSL+NAL +P L
Sbjct: 142 RVSAAGGTGLDDLRAHLAGEISVLAGPSGAGKSSLLNAL----------------DPTLA 185
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR LLP GGY+ DTPGF Q + + L+ F
Sbjct: 186 LA------TGVVSEKIGRGRHTTRRAELLPFM-GGYVVDTPGFTQQEITDTAPEELSDCF 238
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312
PE + C F C H EP C VK ERY+ Y LL+E+R++ +
Sbjct: 239 PEF------SHHTGCRFAPCSHSHEPDCAVKAAVAAEEISRERYEAYLALLNELRMKRK 291
>gi|323141168|ref|ZP_08076069.1| ribosome small subunit-dependent GTPase A [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414311|gb|EFY05129.1| ribosome small subunit-dependent GTPase A [Phascolarctobacterium
succinatutens YIT 12067]
Length = 299
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 135/298 (45%), Gaps = 35/298 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C V+ +KK + + GD R GMI V R + P +AN+D + F+
Sbjct: 29 CKVKGKMKKNRFSLATGDIAGFEVSSSEKREGMITGVLPRRNFLPRPTLANLDLFVAAFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L AE IP L LNK + ++ K+ GYE S +
Sbjct: 89 CAAPDFSFLLADKLLALAELAKIPAILVLNKEDNAPAGLIEQVKAVYEPIGYEVYTLSAQ 148
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+++L +RLR + GPSGVGKSS INA+ SS
Sbjct: 149 NGTGVEALRERLRGKICAFGGPSGVGKSSTINAIDSSV---------------------- 186
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
D R GEVS K GRGKHTTR+ LLP GY+ADTPGF L +T + + +F E
Sbjct: 187 DLRTGEVSEKIGRGKHTTRYAQLLPFD-EGYIADTPGFGNLLLEGLTAEMVLASFREF-- 243
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEFQLR 316
A+ A C F C H EP C VK RY+ Y +L E+++ +E + R
Sbjct: 244 ---ADYEAGCRFCPCTHTHEPVCGVKDAVAAGKISASRYESYLTMLAEVKLLQEKEGR 298
>gi|358465601|ref|ZP_09175537.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357065410|gb|EHI75621.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 301
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL LRD+ TV
Sbjct: 110 HKGIHPVVYISKMDLLEDREELDFYQQIYRAIGYD----FVTSK---EELLPLLRDKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 255 HEPSCAVKPAVEEGIIANFRFDNYLQFLSEIENRRE 290
>gi|319937493|ref|ZP_08011898.1| ribosome-associated GTPase [Coprobacillus sp. 29_1]
gi|319807333|gb|EFW03942.1| ribosome-associated GTPase [Coprobacillus sp. 29_1]
Length = 291
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 140/296 (47%), Gaps = 42/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K + LVGD + V+ G I + R ++ PP+ NVD LL+FS
Sbjct: 25 CRARGKFRKNDQTPLVGDFCEFSIENEVE--GYILKLLPRKNALVRPPICNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L L RFL+ E I + ++K++L ++ ++ GY + S +
Sbjct: 83 AKEPDLNTLLLNRFLILIEHLHIEPLICISKMDLAVQKDVHQLMFPYEAAGYRVYYVSAQ 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + + TVI G SGVGKSSL+NAL D+ E
Sbjct: 143 ENQGIEEIKHLFKKKVTVITGQSGVGKSSLLNAL----------DIHLNIE--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ--SLAQTFPEI 263
E+S GRGKHTTRHV LL + GY+ADTPGF S L++T + LA ++ +
Sbjct: 184 ---TNEISKALGRGKHTTRHVELLKMY-DGYVADTPGF---SSLELTMEPIELAHSYHDF 236
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312
+E+ + C F CLH EP C VK ERY+ Y L E + +E
Sbjct: 237 EELSQL-----CKFRGCLHDSEPYCAVKEAVTDERISQERYEDYLSFLKETKALKE 287
>gi|387880368|ref|YP_006310671.1| putative GTPase EngC [Streptococcus parasanguinis FW213]
gi|386793817|gb|AFJ26852.1| putative GTPase EngC [Streptococcus parasanguinis FW213]
Length = 353
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 87 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 144
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 145 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 198
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 199 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 235
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 236 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 291
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 292 --ADVSHSCKFRTCTHTHEPACAVKPAVEREEIATFRYEDYLQFLSEIENRRE 342
>gi|402312271|ref|ZP_10831200.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium ICM7]
gi|400370330|gb|EJP23318.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium ICM7]
Length = 305
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 37/307 (12%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + +K+ + LVGD V D D G I N+ +R ++ P V
Sbjct: 28 DEGERKGQIFECKAKGIFRKLGVKPLVGDNVDFEITDTKDFEGNIVNIHKRKNALIRPAV 87
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 88 ANIDKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYT 145
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S + GL+ L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 146 DAGFKNIIASTFEESGLEDLKEALKGEVSVLAGASGVGKSSITNIL--APKA-------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 196 ------------NMDTNTVSRKIERGRHTTRHSELFMIDSDTFVFDTPGFTSVESPTFDK 243
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDE 306
+ L F E +E KC F C+H+ EP C VK RYQ Y ++ +E
Sbjct: 244 EELRFHFHEFEEY-----EGKCRFAGCMHINEPDCAVKQALAEKLIGESRYQSYKKMYEE 298
Query: 307 IRIREEF 313
+ R ++
Sbjct: 299 LSERRKY 305
>gi|312867494|ref|ZP_07727702.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0405]
gi|311096900|gb|EFQ55136.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0405]
Length = 292
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLNYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVEREEIAPFRYEDYLQFLSEIENRRE 281
>gi|237809228|ref|YP_002893668.1| ribosome-associated GTPase [Tolumonas auensis DSM 9187]
gi|237501489|gb|ACQ94082.1| ribosome small subunit-dependent GTPase A [Tolumonas auensis DSM
9187]
Length = 344
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 52/321 (16%)
Query: 8 SEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQR 65
S + +D D G C +R ++ V+ GD V+ GS G++E V R
Sbjct: 45 SRFGKHADIEDSNGEIHRCNMRRTIES----VVTGDHVIWRAGSEALQGISGVVEAVRPR 100
Query: 66 STEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
+ + + P AN+D ++++ ++ P+ + R+LV AE IP L LNK+
Sbjct: 101 QSVLTRPDFYDGIKPVAANIDQIVIVSAV-LPEFSTNIVDRYLVAAEHVEIPPLLVLNKI 159
Query: 118 ELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
+L+D+ + +L + GY L S E++ GLD L +L+D+ +V VG SGVGKSS
Sbjct: 160 DLLDDISREQLERKLDIYRNLGYPLLNVSCETEHGLDELQAQLKDKVSVFVGQSGVGKSS 219
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINAL PHA +GE+S +SG G+HTT L + G
Sbjct: 220 LINALH--PHAKAV--------------------IGEISGQSGLGQHTTTTARLYHFASG 257
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV---- 290
G L D+PG + SL + + + F E ++ L C F +C H +PGC++
Sbjct: 258 GMLIDSPGIREFSLWHLENERVTWCFKEFRDYL-----GGCKFRDCKHGSDPGCLIREAV 312
Query: 291 ---KGDWERYQYYFQLLDEIR 308
K ERY Y ++L+ ++
Sbjct: 313 EQGKISAERYHNYHRILESMQ 333
>gi|333029798|ref|ZP_08457859.1| ribosome biogenesis GTPase RsgA [Bacteroides coprosuis DSM 18011]
gi|332740395|gb|EGJ70877.1| ribosome biogenesis GTPase RsgA [Bacteroides coprosuis DSM 18011]
Length = 310
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 120/242 (49%), Gaps = 37/242 (15%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH- 133
ANVD +L +++ P+ + RFL E+ +P TL NK++L DE+ L +H
Sbjct: 86 ANVDQCMLFVTVNHPETSTVFIDRFLASTEAYRVPTTLLFNKIDLYDEDELRYIDGLIHL 145
Query: 134 --TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
T GY + SV ++ G++ L ++LR + T+ G SGVGK++LIN +
Sbjct: 146 YTTIGYTCIKTSVVTREGIEDLKEKLRGKVTLFSGHSGVGKTTLINEML----------- 194
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
P L D RV E+ST G HTT + + + GY+ DTPG +
Sbjct: 195 -----PDL------DLRVSEISTYHNTGMHTTTYSEMFEIPQSGYIIDTPGIKGFGTFDM 243
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC----VVKGDW---ERYQYYFQLL 304
K+ +A FPEI ++ K C FNNC+H+ EPGC VK + RY Y ++
Sbjct: 244 EKEEIAHFFPEIFKISK-----NCRFNNCIHIHEPGCAVLEAVKEHYISESRYHSYLSMM 298
Query: 305 DE 306
D+
Sbjct: 299 DD 300
>gi|414156317|ref|ZP_11412626.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0442]
gi|410872526|gb|EKS20470.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0442]
Length = 292
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 140/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E + ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDLEPIRYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L D+TTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTDKTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYYLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVETEEISTFRYEDYLQFLSEIENRRE 281
>gi|417917874|ref|ZP_12561431.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis SK236]
gi|342829695|gb|EGU64043.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis SK236]
Length = 292
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 IETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVETEEIATFRYEDYLQFLSEIENRRE 281
>gi|337282763|ref|YP_004622234.1| GTP-binding protein [Streptococcus parasanguinis ATCC 15912]
gi|335370356|gb|AEH56306.1| GTP-binding protein [Streptococcus parasanguinis ATCC 15912]
Length = 292
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ C F C H EP C VK E RY+ Y Q L EI R E
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVEREEIATFRYEDYLQFLSEIENRRE 281
>gi|374582939|ref|ZP_09656033.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
youngiae DSM 17734]
gi|374419021|gb|EHQ91456.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
youngiae DSM 17734]
Length = 300
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 139/297 (46%), Gaps = 43/297 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVD---RRGMIENVFQRSTEILDPPVANVDHLLL 82
C +R + + L GD+V + S + + IE+V R + P +ANVD +L
Sbjct: 25 CSLRGRFRVKDQEFLPGDQVSILSEEAEGPHLAKATIESVGSRRNALTRPAIANVDQAIL 84
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-----WGY 137
+F+M P+ + L R L++ I L K++ + LN T GY
Sbjct: 85 VFAMTSPRPDLNLLDRLLIQVIEADIEPILVFTKLDKYRADPLNDGPDHALTDVYRNIGY 144
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ S E+ G++ + L ++ +V+ GPSG GKSSL NAL SP
Sbjct: 145 KVFEVSSETGQGIEEIRAHLANKISVLAGPSGAGKSSLFNAL--SP-------------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
G K + G +S KS RG+HTTRHV L+ + GG +ADTPGF+ L ++ + L
Sbjct: 189 --GKKL----KTGRISHKSKRGRHTTRHVELM-VCAGGLVADTPGFSSLYLPEMKRAELT 241
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
FPE A C FN+CLH EP C +K ERY++Y L E+
Sbjct: 242 DFFPEF-----AQRRGLCRFNSCLHDKEPNCAIKAALENGEIYPERYEHYLIFLKEV 293
>gi|429728022|ref|ZP_19262767.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius VPI 4330]
gi|429150694|gb|EKX93591.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius VPI 4330]
Length = 268
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 133/265 (50%), Gaps = 30/265 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV+ +D ++G+I+ + R + ++ PP+AN+D +L+ FS
Sbjct: 31 CKARGIFRKKNMAPLVGDRVVLSILDEEGKKGIIDEILPRKSYLVRPPIANIDKVLITFS 90
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSV 144
+ +P L RF++ AE + + + L K +L ++ ++ N K + GY +
Sbjct: 91 VKEPVPNLSLLDRFIILAEREELEIVILLTKTDLDEDRLISNQIKEEFESIGYPVIDVCA 150
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +D +++ + +V G SGVGKSS++NA +D F
Sbjct: 151 RTGENIDRVIEEMEGCVSVFAGQSGVGKSSILNA------------IDPEF--------- 189
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+ + E+S K GRGKHTTRH L + +ADTPGF+ + ++ + L + F E
Sbjct: 190 -NLKTAEISQKLGRGKHTTRHAELYKIGKNAVVADTPGFSSFDVNELDPEELREYFVEFG 248
Query: 265 EMLKANEPAKCSFNN-CLHLGEPGC 288
E + C F N C+H EP C
Sbjct: 249 EY------SDCRFGNKCIHKNEPDC 267
>gi|326798848|ref|YP_004316667.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
gi|326549612|gb|ADZ77997.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
Length = 305
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 37/240 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKS 130
AN+D L+ ++ P + RFLV AE+ IP + NK++L EE +L ++S
Sbjct: 85 AANLDQAYLVVTLASPPTSLGFIDRFLVTAEAYDIPAGILFNKLDLFSEEGLEILADYRS 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY S + +D++ L + T+I G SGVGKS+LIN R P AS
Sbjct: 145 IYEHLGYPCFEISALKGINIDAIEASLTHKVTLISGHSGVGKSTLIN--RLIPEAS---- 198
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
R G++S S +GKHTT +LPL GGY+ DTPG + ++
Sbjct: 199 ----------------LRTGKISDWSDKGKHTTTFAEMLPLIQGGYIIDTPGIQEFGVID 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ +Q L+ FPE++ ++ +C FNNC H+ EPGC V G E RY+ Y +
Sbjct: 243 IEQQELSHFFPEMRALMN-----RCRFNNCRHINEPGCAVLGALEDGEIETSRYESYLSI 297
>gi|407698702|ref|YP_006823489.1| GTPase RsgA [Alteromonas macleodii str. 'Black Sea 11']
gi|407247849|gb|AFT77034.1| GTPase RsgA [Alteromonas macleodii str. 'Black Sea 11']
Length = 347
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 150/313 (47%), Gaps = 52/313 (16%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D +GV V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDASGV----VSRCHIRRTVDSVVCGDKVFFSKGDEAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERTTVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------K 291
D+PG + SL + + + F E ++ L C F +C HL +PGC++ K
Sbjct: 264 DSPGVREFSLWHIPTERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCLLREAVEEGK 318
Query: 292 GDWERYQYYFQLL 304
ER+ Y ++L
Sbjct: 319 ISAERFDSYHRIL 331
>gi|404481899|ref|ZP_11017128.1| ribosome small subunit-dependent GTPase A [Clostridiales bacterium
OBRC5-5]
gi|404344869|gb|EJZ71224.1| ribosome small subunit-dependent GTPase A [Clostridiales bacterium
OBRC5-5]
Length = 300
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 37/307 (12%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + +K+ + LVGD V D D G I + +R ++ P V
Sbjct: 23 DEGERKGQIFECKAKGIFRKLGVKPLVGDNVDFEITDTKDFEGNIVKIHKRKNALIRPAV 82
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 83 ANIDKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALKY--AKIYT 140
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S + GL+ L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 141 DAGFKNIIASTFEENGLEDLKEALKGEVSVLAGASGVGKSSITNIL--APKA-------- 190
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 191 ------------NMDTNTVSRKIERGRHTTRHSELFMIDSDTFVFDTPGFTSVESPAFDK 238
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ L F E +E KC F C+H+ EP C VK E RYQ Y ++ +E
Sbjct: 239 EELRFHFHEFEEY-----EGKCRFAGCMHINEPDCAVKQALEENLIGESRYQSYKKMYEE 293
Query: 307 IRIREEF 313
+ R ++
Sbjct: 294 LSERRKY 300
>gi|322390322|ref|ZP_08063850.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
gi|321142970|gb|EFX38420.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
Length = 292
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 140/291 (48%), Gaps = 45/291 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
A+ C F C H EP C VK E RY+ Y Q L EI R
Sbjct: 231 --ADVSHSCKFRTCTHTHEPACAVKPAVEREEIAPFRYEDYLQFLSEIENR 279
>gi|169349820|ref|ZP_02866758.1| hypothetical protein CLOSPI_00558 [Clostridium spiroforme DSM 1552]
gi|169293388|gb|EDS75521.1| ribosome small subunit-dependent GTPase A [Clostridium spiroforme
DSM 1552]
Length = 285
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 47/301 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K + + LVGD V ++ D G I + R+ ++ PP+ N+D L++ +
Sbjct: 25 CRARGKFRKDEIKPLVGDFV-----EYQD--GYIMKLLPRNNFLVRPPICNIDQALIVSA 77
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L +FL+ E I + L+K++L D+ + ++ + GY+ S +
Sbjct: 78 CKEPDFSSTLLDKFLLVVEHLNIEPIIVLSKMDL-DDGSIESYVNDYRKAGYKVYEISSK 136
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + D+ TVI G SGVGKSSL+NAL D++ E
Sbjct: 137 DNYGIDEIKSIFEDKVTVITGQSGVGKSSLLNAL----------DINLNLE--------- 177
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+S GRGKHTTRHV L+ + GGY+ DTPGF+ L +T + LA + + +E
Sbjct: 178 ---TNNISKALGRGKHTTRHVELIKMY-GGYIGDTPGFSSLE-LDMTPEQLAVAYHDFEE 232
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEFQLRTF 318
C F CLH EP C +K ERY++Y L E++ +EE R +
Sbjct: 233 Y-----SQNCKFRGCLHDSEPRCAIKKAVEDGMISKERYEHYLLSLQEVKKKEE---RKY 284
Query: 319 G 319
G
Sbjct: 285 G 285
>gi|296120818|ref|YP_003628596.1| ribosome small subunit-dependent GTPase A [Planctomyces limnophilus
DSM 3776]
gi|296013158|gb|ADG66397.1| ribosome small subunit-dependent GTPase A [Planctomyces limnophilus
DSM 3776]
Length = 375
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 146/303 (48%), Gaps = 49/303 (16%)
Query: 21 GVELLCVVRALLKKIKRR----VLVGDKV-------VVGSIDWVD-RRGMIENVFQRSTE 68
G +C VR +++ + R V+ GDKV G I+ V+ R G++ Q
Sbjct: 98 GRRFMCSVRRIVRTVARETRNAVVAGDKVWITASDETTGVIERVEPREGVLSRGHQNREH 157
Query: 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
IL VANV +L++ S QP L+P + RFLV A G+ + +NK++LVD L +
Sbjct: 158 IL---VANVSQMLIVGSAAQPNLKPALIDRFLVSAGKGGVHPIVCVNKIDLVDPVELVSL 214
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
G + + SV + G+D L Q L+++ TV G SGVGKSSL+NA+
Sbjct: 215 LGWYSQIGCDVVMTSVTTGYGVDRLRQLLKNEQTVFAGQSGVGKSSLLNAV--------- 265
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+P L + G+VS + +GKHTTR+ LLPL GG++ DTPG Q L
Sbjct: 266 -------QPGLSLQ------TGQVSEVTQKGKHTTRYTQLLPLIEGGWVVDTPGIRQMEL 312
Query: 249 LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYF 301
V + + F E + + A C F +C H E C V + RY+ Y
Sbjct: 313 WDVRPEEIEGYFVEFRPFV-----ALCRFPSCRHYREEDCAVIRAVQMDLIPRVRYESYL 367
Query: 302 QLL 304
+++
Sbjct: 368 RMM 370
>gi|383761307|ref|YP_005440289.1| GTPase EngC [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381381575|dbj|BAL98391.1| GTPase EngC [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 346
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 138/303 (45%), Gaps = 52/303 (17%)
Query: 25 LCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQR-----------STEIL 70
+C VR L + R V VGD+V V + ++ G+IE + R S
Sbjct: 69 ICEVRGRLLLERGRDTLVAVGDRVWVAPVG--EKSGLIERIEARRSVLSRQHPGESRPAE 126
Query: 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130
D +AN D L++F+ P+ L RFLV AE+ +P+ + +NK+EL EE
Sbjct: 127 DVILANPDQALVVFAAANPEPHLRMLDRFLVIAEANELPVMICVNKIELTGEEAARRQFG 186
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY L+ S + ++G+D+L L D+ TV+ GPSGVGKSSLINA+ H
Sbjct: 187 LYERIGYPVLYASAKQRIGIDALRDFLTDRITVVTGPSGVGKSSLINAVHPDLHL----- 241
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSGGGYLADTPGFNQPSL 248
R G++ +G+HTTR L LP Y+ADTPG + L
Sbjct: 242 -----------------REGDLRDFMNKGRHTTRAAQLFRLPFGRNSYVADTPGIRELGL 284
Query: 249 LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYF 301
+ +L F E+ L C + C H EPGC V+ ERY+ Y
Sbjct: 285 YDIEPSNLPFYFREMTAYLH-----DCRYPGCTHDHEPGCAVRAAVERGEIARERYESYL 339
Query: 302 QLL 304
+LL
Sbjct: 340 RLL 342
>gi|422933408|ref|ZP_16966329.1| GTP-binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339891128|gb|EGQ80155.1| GTP-binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 297
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 141/293 (48%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG--YEPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEENKISKDRYDFYKKTLE 287
>gi|116628486|ref|YP_821105.1| ribosome-associated GTPase [Streptococcus thermophilus LMD-9]
gi|116101763|gb|ABJ66909.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 290
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRSVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|295398478|ref|ZP_06808515.1| ribosome-associated GTP-binding protein [Aerococcus viridans ATCC
11563]
gi|294973293|gb|EFG49083.1| ribosome-associated GTP-binding protein [Aerococcus viridans ATCC
11563]
Length = 310
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 44/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + + LVGD V + + + G + + R ++++ P VANVD LL+ S+
Sbjct: 42 ARGQFRNTQTTPLVGDFVEFQANNT--KEGYVMKILPRYSQMIRPAVANVDVALLVASVT 99
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE------EVLNTWKSRLHTWGYEPLF 141
+P+++P L RFLV ES I L +K++L D+ + ++ + GY+ +
Sbjct: 100 EPQIQPKLLDRFLVYLESENIEPILYFSKMDLTDQASQADKDRIDQFIKVYKEVGYQ-VI 158
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + D L + ++T V+VG SGVGKS+L+N L P L
Sbjct: 159 LSTDLDGNFDQLKDIVANRTMVVVGQSGVGKSTLLNRLL----------------PDLAI 202
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K GE+ST GRG+HTTRH L + GG +ADTPGF+ + ++ K L+ FP
Sbjct: 203 K------TGEISTSLGRGRHTTRHTELHDIFGGK-VADTPGFSSIDIDQLDKVLLSNYFP 255
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E++ + +C F C H+ EP C VK E RY Y Q+ EI
Sbjct: 256 EMRAIQD-----QCKFRGCTHIQEPKCAVKAALEAGEIAQSRYDSYLQIFQEI 303
>gi|224541741|ref|ZP_03682280.1| hypothetical protein CATMIT_00913 [Catenibacterium mitsuokai DSM
15897]
gi|224525345|gb|EEF94450.1| ribosome small subunit-dependent GTPase A [Catenibacterium
mitsuokai DSM 15897]
Length = 288
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 149/294 (50%), Gaps = 41/294 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ LVGD + D G I ++ +R ++ PP+ N+D LL+FS
Sbjct: 25 CKARGKFRNRGQKPLVGD--FCSFQEEKDGSGYILSLDERHNQLERPPICNIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L +FL E I + + K++L + E++ K + + Y+ F S +
Sbjct: 83 IAEPDFDQMLLDQFLAMVEYEKIKPIIIITKIDL-NRELVPVIKKKYN--AYDLYFVSSK 139
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + L+++ TV+ G SGVGKSSL+NAL +++ E
Sbjct: 140 ENEGIEEIKPLLKNRVTVVTGQSGVGKSSLLNAL----------NIELNIE--------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
E+S GRGKHTTRHV L+P+ GGY+ADTPGF+ LK+ LA T+ + +E
Sbjct: 181 ---TNEISQALGRGKHTTRHVELIPMY-GGYIADTPGFSSLE-LKMEPVELATTYHDFRE 235
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312
+ C F CLH EP C VK D RY+ Y QLL +++ R++
Sbjct: 236 L-----SHHCKFRGCLHDSEPKCAVKEAVEAGDIDQTRYEDYLQLLKQVKERKD 284
>gi|154497987|ref|ZP_02036365.1| hypothetical protein BACCAP_01967 [Bacteroides capillosus ATCC
29799]
gi|150272977|gb|EDN00134.1| ribosome small subunit-dependent GTPase A [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 299
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 147/315 (46%), Gaps = 43/315 (13%)
Query: 17 NDKTGVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
+D++G C R + K LVGD+V + D G ++ + R + P VA
Sbjct: 17 DDRSGAAPTACRARGRFRHAKISPLVGDRVRFTPLP--DGSGAVDEILPRRNQFQRPAVA 74
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S P +PF + R + A G + LNK +L + L +
Sbjct: 75 NIDQMVIIASGAIPVTDPFLIDRMISLASWKGCESIVCLNKCDLNSAQSLYEI---YRSA 131
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
G+ L S E+ G+D L + + + + G SGVGKSS++NAL
Sbjct: 132 GFTTLRVSAETGEGIDELAEIIAGKVSAFTGNSGVGKSSILNAL---------------- 175
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ---PSLLKVT 252
EP G VGEVS K GRG+HTTRHV L L G +ADTPGF+ +
Sbjct: 176 EPGFGLP------VGEVSDKLGRGRHTTRHVELFRLKNGAIVADTPGFSSFDTEQMEGCR 229
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDWERYQY--YFQLLD 305
K+ LA TF E L +C F C H+ E GC V +G+ R ++ Y +L +
Sbjct: 230 KEDLAATFREFTPYLD-----QCRFTGCAHVKEKGCAVLAAVKEGEIARSRHASYVRLYE 284
Query: 306 EIRIREEFQLRTFGT 320
E R++++ + GT
Sbjct: 285 EAAQRKDWEEKKRGT 299
>gi|418323810|ref|ZP_12935072.1| ribosome small subunit-dependent GTPase A [Staphylococcus
pettenkoferi VCU012]
gi|365229156|gb|EHM70319.1| ribosome small subunit-dependent GTPase A [Staphylococcus
pettenkoferi VCU012]
Length = 291
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD VV + G I +V +R+ ++ PPV+N+DHL+++ S
Sbjct: 28 RGLFRKKKFSPIVGD--VVDFEVENESEGYIYHVHERTNQLKRPPVSNIDHLVIVMSAKA 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE--- 145
P L RFLV A S + ++ + K +L+ ++ RL Y L SVE
Sbjct: 86 PDFSSQLLDRFLVIAHSYALAPSIVVTKKDLLSDDEAREVNERLEV--YRDLGYSVEVVG 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D L + V+ G SGVGKS+L+N F P L E
Sbjct: 144 RDDAVDQLFTNWSEGLVVLSGQSGVGKSTLLNK----------------FHPELS---LE 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
Q ++S RG+HTTRH+ L GY+ADTPGF+ + K L F EIK+
Sbjct: 185 TQ---DISKALNRGRHTTRHIELFQFE-KGYVADTPGFSALDFDHIDKSELKDYFVEIKD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A C F +C+H+ EP C VK E RYQ+Y QL +E+ R+E
Sbjct: 241 YGTA-----CKFRDCMHMKEPKCHVKAQVETGAIRDFRYQHYVQLYEELANRKE 289
>gi|386345506|ref|YP_006041670.1| hypothetical protein STH8232_2067 [Streptococcus thermophilus JIM
8232]
gi|339278967|emb|CCC20715.1| hypothetical protein STH8232_2067 [Streptococcus thermophilus JIM
8232]
Length = 290
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|393781683|ref|ZP_10369877.1| ribosome small subunit-dependent GTPase A [Bacteroides salyersiae
CL02T12C01]
gi|392676287|gb|EIY69725.1| ribosome small subunit-dependent GTPase A [Bacteroides salyersiae
CL02T12C01]
Length = 310
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 124/254 (48%), Gaps = 40/254 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ IP+ L NKV+ DE+ L+ S ++
Sbjct: 85 AANLDQCMLVVTINYPETSTIFIDRFLASAEAYRIPVKLVFNKVDAYDEDELHYLDSLIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S +SK G+D++ + L+ + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKISAKSKQGIDAIQKELKGRITLFSGHSGVGKSTLINAILPG-------- 196
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++ + E+ST +G HTT + P+ GGY+ DTPG
Sbjct: 197 --------------QEVKTAEISTYHNKGMHTTTFSEMFPVERGGYIIDTPGIKGFGTFN 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ + FPEI + A C +NNC H EPGC V+ E RY Y +
Sbjct: 243 MEEEEIGHYFPEIFKF-----SADCKYNNCTHRQEPGCAVRQAVEQHYISESRYTSYLNM 297
Query: 304 LDEIRIREEFQLRT 317
L++ +EE + R
Sbjct: 298 LED---KEEGKYRA 308
>gi|55821770|ref|YP_140212.1| ribosome-associated GTPase [Streptococcus thermophilus LMG 18311]
gi|55823688|ref|YP_142129.1| ribosome-associated GTPase [Streptococcus thermophilus CNRZ1066]
gi|55737755|gb|AAV61397.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739673|gb|AAV63314.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 290
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVDFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|116333599|ref|YP_795126.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098946|gb|ABJ64095.1| Predicted GTPase [Lactobacillus brevis ATCC 367]
Length = 298
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 43/289 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K LVGD+V S + G I + R + PPVAN+D +++ ++
Sbjct: 27 ARGNFRKRKITPLVGDRVKFDSSS--PKEGYILEILPRDNALTRPPVANIDQGVVVTAVA 84
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSV 144
P+ L R L+ E + I + K +L+D++ T+++ + GY P+ +
Sbjct: 85 APEFSTNLLDRQLIALEVSHIAPVIYFTKTDLIDDDRYQTFETLAVGYRKIGY-PVCLTR 143
Query: 145 E--SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
E + GLD L L + TVI+G +G GKS+L+N L SP + A
Sbjct: 144 EPFASTGLDQLRDTLAGKETVIMGQTGAGKSTLLNHL--SPELTLA-------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+ST RG+HTTR VSL+P++ G +ADTPGF+ L + + L Q FPE
Sbjct: 188 ------TGEISTALNRGRHTTRKVSLMPVA-NGLVADTPGFSSYDTLTIDYRELGQYFPE 240
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDW--ERYQYYFQLL 304
N ++C F C+H+ EPGC VK G++ RY Y QLL
Sbjct: 241 F-----LNVASECRFRGCVHVNEPGCAVKDRLAAGEFMQSRYDNYLQLL 284
>gi|445382868|ref|ZP_21427336.1| GTPase RsgA [Streptococcus thermophilus MTCC 5460]
gi|445395622|ref|ZP_21429067.1| GTPase RsgA [Streptococcus thermophilus MTCC 5461]
gi|444748393|gb|ELW73363.1| GTPase RsgA [Streptococcus thermophilus MTCC 5461]
gi|444748511|gb|ELW73476.1| GTPase RsgA [Streptococcus thermophilus MTCC 5460]
Length = 290
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQ-----SSHGCKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|357048784|ref|ZP_09110018.1| ribosome biogenesis GTPase RsgA [Enterococcus saccharolyticus 30_1]
gi|355384737|gb|EHG31795.1| ribosome biogenesis GTPase RsgA [Enterococcus saccharolyticus 30_1]
Length = 294
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 136/280 (48%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ QP L RF
Sbjct: 38 LVGDEVIFESSNPTD--GYLLEILPRKNELIRPPVANVDQGVVVTSLVQPNFSFNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E I + L+K +LV D+ + + GY+ + ++ L+ LQR+
Sbjct: 96 LVTLEYKEIEPIIFLSKTDLVSDQSEVQKIAALYQQIGYQVIVSKADNSDLLE--LQRIF 153
Query: 159 -DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P D E+S G
Sbjct: 154 PERLTVFMGQSGAGKSTLLN--RIVPEL--------------------DLETAEISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RGKHTTRHV LL L G +ADTPGF+ L++ L + FPE + +C F
Sbjct: 192 RGKHTTRHVELLTLY-DGLVADTPGFSSIDFLEIDSGQLPKQFPEFLAL-----AHQCRF 245
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C+HL EP C VK E RY+ Y Q L+EI R
Sbjct: 246 RECMHLNEPNCAVKEAVEQQTVALTRYKNYVQFLEEIENR 285
>gi|257871111|ref|ZP_05650764.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257805275|gb|EEV34097.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 294
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 136/280 (48%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ QP L RF
Sbjct: 38 LVGDEVIFESSNPTD--GYLLEILPRKNELIRPPVANVDQGVVVTSLIQPNFSFNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E I + L+K +LV D+ + + GY+ + ++ L+ LQR+
Sbjct: 96 LVTLEYKEIEPIIFLSKTDLVSDQSEVQKIAALYQQIGYQVIVSKADNSDLLE--LQRIF 153
Query: 159 -DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P D E+S G
Sbjct: 154 PERLTVFMGQSGAGKSTLLN--RIVPEL--------------------DLETAEISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RGKHTTRHV LL L G +ADTPGF+ L++ L + FPE + +C F
Sbjct: 192 RGKHTTRHVELLTLY-DGLVADTPGFSSIDFLEIDSGQLPKQFPEFLAL-----AHQCRF 245
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C+HL EP C VK E RY+ Y Q L+EI R
Sbjct: 246 RECMHLNEPNCAVKEAVEQQTVALTRYKNYVQFLEEIENR 285
>gi|449134431|ref|ZP_21769932.1| ribosome small subunit-dependent GTPase A [Rhodopirellula europaea
6C]
gi|448887061|gb|EMB17449.1| ribosome small subunit-dependent GTPase A [Rhodopirellula europaea
6C]
Length = 366
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 149/313 (47%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 81 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 140
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 141 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 197
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ +D L L+++ T + G SGVGKSSL+NA+
Sbjct: 198 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVDYLRALLKNRQTALAGQSGVGKSSLLNAV- 256
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +GKHTT L+PL+ GG + DT
Sbjct: 257 ---------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFDT 295
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + C + +CLHL E C VK D
Sbjct: 296 PGIRQFQLWDISASEVAGLMPDLRPYVSG-----CRYPDCLHLAEDDCAVKNAVADARID 350
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 351 ARRYDAYCHLLEE 363
>gi|269928999|ref|YP_003321320.1| ribosome small subunit-dependent GTPase A [Sphaerobacter
thermophilus DSM 20745]
gi|269788356|gb|ACZ40498.1| ribosome small subunit-dependent GTPase A [Sphaerobacter
thermophilus DSM 20745]
Length = 317
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 145/296 (48%), Gaps = 45/296 (15%)
Query: 26 CVVRALLKKIKRR---VLVGDKVVV-------GSIDWVDRRGMIENVFQRSTEILDPPV- 74
C VR +LK+ +R+ V VGD+V + G I+ V R + R TE ++ +
Sbjct: 42 CTVRGVLKRARRKTDPVAVGDRVEITLTGPGEGVIEAVAPRLRTLSRRARGTEDVEQVIL 101
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN D L+ +F++ +P+ P L RFL+ AE+ G+ + +NK++L L
Sbjct: 102 ANPDQLVAVFAVAEPEPHPRMLDRFLIIAEARGLAAAVCVNKIDLDPSGELRRIFDPYRA 161
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L + + + GPSGVGKSSLINAL
Sbjct: 162 AGYPVIETSATTGVGIDELRAILHGKVSALSGPSGVGKSSLINAL--------------- 206
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D RVGE+S +G+G+HTT +L+ L Y+ADTPG Q + +
Sbjct: 207 -HPEL------DLRVGEISAVTGKGRHTTTATTLILLDDETYIADTPGIRQLGFWGIDFE 259
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL 303
L FPE + L +C + +C HL EPGC V D++RY+ Y L
Sbjct: 260 RLDHYFPEFRPYLD-----QCYYADCTHLTEPGCAVLAAVEAGAIDYDRYESYRAL 310
>gi|302874754|ref|YP_003843387.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulovorans 743B]
gi|307690631|ref|ZP_07633077.1| ribosome-associated GTPase [Clostridium cellulovorans 743B]
gi|302577611|gb|ADL51623.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulovorans 743B]
Length = 293
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 127/292 (43%), Gaps = 38/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + VGD V ++ + +G I + +R +L P VANV ++F+
Sbjct: 29 CKARGKFRTHNISPYVGDVV---ELNIEEDKGFIIKISERKNLLLRPVVANVTQAFVVFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + NKV+LVD + GY+ +F +
Sbjct: 86 LKNPDVNLTLLNKFLILCEYNEIKPIICFNKVDLVDNPEEELAVKMIKQTGYDYIFLKAK 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K L+ ++ L + ++ GPSG GKS+L N + P
Sbjct: 146 EKYNLELVMDHLNENISIFCGPSGAGKSTLFNGMVGKPL--------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+GEVS K RGKHTTRH L+ GY+ DTPGF+ + + L PE KE
Sbjct: 185 -MEIGEVSEKLKRGKHTTRHSELIAFH-QGYIVDTPGFSSLEFDFIDEVDLKNYLPEFKE 242
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
+C F+ C H EP C VK E RY +Y L +E++ R
Sbjct: 243 Y-----EDQCKFSGCNHYKEPKCAVKTAVEEEKIHKSRYDFYISLYEELKGR 289
>gi|331004333|ref|ZP_08327808.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411399|gb|EGG90814.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 305
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 37/307 (12%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + + I + LVGD V D D G I + QR ++ P V
Sbjct: 28 DEGNRKGQIFSCKAKGIFRNIGVKPLVGDNVDFEITDEKDFEGNIIKIHQRKNSLIRPAV 87
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 88 ANIDKVMLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYT 145
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 146 DAGFKNIIASTVEDGGLKTLKEALKGEVNVLAGASGVGKSSITNIL--APKA-------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 196 ------------NMDTNTVSRKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDK 243
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ L F E + KC F C+H+ EP C VK E RYQ Y ++ +E
Sbjct: 244 EELRFYFNEFTKY-----EGKCRFAGCMHINEPDCAVKEALEKEYISESRYQSYKKMYEE 298
Query: 307 IRIREEF 313
+ R ++
Sbjct: 299 MSERRKY 305
>gi|338731525|ref|YP_004660917.1| ribosome small subunit-dependent GTPase A [Thermotoga thermarum DSM
5069]
gi|335365876|gb|AEH51821.1| ribosome small subunit-dependent GTPase A [Thermotoga thermarum DSM
5069]
Length = 295
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 150/292 (51%), Gaps = 39/292 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + +VGD +V +D G+IE++ +R E+L P VAN+D ++ + +
Sbjct: 31 CYLRGRFRLQDLKPIVGD--IVEYTKVLDG-GVIESILKRKNELLKPRVANIDQVICVCT 87
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFC-S 143
+ +P++ + + LV E TG+ + LNK++L+ EE + + +G PL C S
Sbjct: 88 LKRPEVPLLVVDKLLVLVEQTGLDAVVVLNKIDLLTEEDEPKKQEFIKAYGSIYPLICTS 147
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ GLD L + L+D+ +V G SGVGKS+++NA+ P S
Sbjct: 148 AKTGEGLDKLKEVLKDKVSVFAGVSGVGKSTILNAI--CPGVS----------------- 188
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ EVS K+ RG+HTT L+ GG++ DTPGF+ + + + L F +
Sbjct: 189 ---LKTQEVSEKTERGRHTTTSAELITFPFGGHVVDTPGFSLIEITHIRPEELQLYFRDF 245
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+E+ KC F +C H EPGC V+ E RY+ Y ++++E++
Sbjct: 246 REL-----SEKCLFTDCTHTSEPGCKVREAVEKGILARSRYESYLEMMEEVK 292
>gi|315640406|ref|ZP_07895517.1| ribosome small subunit-dependent GTPase A [Enterococcus italicus
DSM 15952]
gi|315483831|gb|EFU74316.1| ribosome small subunit-dependent GTPase A [Enterococcus italicus
DSM 15952]
Length = 293
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 137/287 (47%), Gaps = 39/287 (13%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K+K LVGD+VV S + D G I + R E++ P VANVD +++ S+ +
Sbjct: 27 RGNFRKLKISPLVGDEVVFESTNQTD--GYILEMLPRKNELVRPAVANVDQAVIVTSLVE 84
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESK 147
P L RFLV I + L KV++ DEE ++ + GY+ + + E+
Sbjct: 85 PNFSYNLLDRFLVTLAHQSIEPIIYLTKVDIFDEEEKIDEIEHIYGSIGYK-VIVAKETS 143
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+D L D+ TV +G SG GKS+L+N + P L K
Sbjct: 144 EAIDELEALFSDKLTVFMGQSGAGKSTLLNQIL----------------PELQLK----- 182
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
GE+S GRG+HTTRHV LL ++ GG +ADTPGF+ L + L + FPE L
Sbjct: 183 -TGEISDALGRGRHTTRHVELLEIA-GGLVADTPGFSAIDFLSIEAVELPREFPEFVARL 240
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+C F C HL EP C +K E RY Y Q + EI
Sbjct: 241 D-----QCRFRECQHLNEPDCAIKAAVESGEIAQSRYDNYQQFMSEI 282
>gi|257868087|ref|ZP_05647740.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874639|ref|ZP_05654292.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257802201|gb|EEV31073.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808803|gb|EEV37625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 294
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 132/280 (47%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +L+ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVLVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ + A C F
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAV-----AANCRF 245
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C HL EP C VK RY+ Y Q L+EI R
Sbjct: 246 RECRHLNEPDCAVKQGVAANEIAETRYKNYVQFLEEIENR 285
>gi|421611740|ref|ZP_16052872.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SH28]
gi|408497453|gb|EKK01980.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SH28]
Length = 386
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 149/313 (47%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 101 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 160
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 161 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 217
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 218 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV- 276
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +GKHTT L+PL+ GG + DT
Sbjct: 277 ---------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFDT 315
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + + C + +CLHL E C VK D
Sbjct: 316 PGIRQFQLWDISASEVAGLMPDLRPYV-----SSCRYPDCLHLAEDDCAVKNAVADARID 370
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 371 ARRYDAYCHLLEE 383
>gi|322391322|ref|ZP_08064792.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
gi|321145748|gb|EFX41139.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
Length = 301
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 133/276 (48%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ H GY+ V SK + LL L D+ TV
Sbjct: 110 HKGIHPIIYISKMDLLEDGGELDFYEQTYHAIGYD----FVTSK---EELLPLLTDKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPE+ A+ C F +C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTSEDLNQAFPEL-----ASVSRDCKFRSCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 255 HEPSCAVKLAVEEGTIATFRFDNYLQFLSEIENRRE 290
>gi|229548025|ref|ZP_04436750.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|255970689|ref|ZP_05421275.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|257091361|ref|ZP_05585722.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|312905425|ref|ZP_07764539.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0635]
gi|312953214|ref|ZP_07772060.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0102]
gi|384514347|ref|YP_005709440.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
OG1RF]
gi|384516914|ref|YP_005704219.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
62]
gi|422689953|ref|ZP_16748043.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0630]
gi|422692424|ref|ZP_16750445.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0031]
gi|422725678|ref|ZP_16782136.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0312]
gi|422732810|ref|ZP_16789139.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0645]
gi|430360173|ref|ZP_19426150.1| ribosome-associated GTPase [Enterococcus faecalis OG1X]
gi|430366203|ref|ZP_19427384.1| ribosome-associated GTPase [Enterococcus faecalis M7]
gi|229306901|gb|EEN72897.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|255961707|gb|EET94183.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|257000173|gb|EEU86693.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|310628831|gb|EFQ12114.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0102]
gi|310631154|gb|EFQ14437.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0635]
gi|315152783|gb|EFT96799.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0031]
gi|315159382|gb|EFU03399.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0312]
gi|315161205|gb|EFU05222.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0645]
gi|315577121|gb|EFU89312.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0630]
gi|323479047|gb|ADX78486.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
62]
gi|327536236|gb|AEA95070.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
OG1RF]
gi|429513085|gb|ELA02678.1| ribosome-associated GTPase [Enterococcus faecalis OG1X]
gi|429517217|gb|ELA06684.1| ribosome-associated GTPase [Enterococcus faecalis M7]
Length = 297
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 133/282 (47%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE ++C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASRC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|333894628|ref|YP_004468503.1| GTPase RsgA [Alteromonas sp. SN2]
gi|332994646|gb|AEF04701.1| GTPase RsgA [Alteromonas sp. SN2]
Length = 348
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 141/299 (47%), Gaps = 49/299 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDR---RGMIENVFQRSTEI--------LDPPVA 75
V R +++ V+ GDKV+ D D RG+IE V R + + + P A
Sbjct: 62 VSRCHIRRTVDSVVCGDKVLFSKGDDADSGSVRGVIEIVNDRHSVLTRPDFYDGIKPIAA 121
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S P L + R+LV E GI + LNKVEL+ + T +L +
Sbjct: 122 NIDKIIVV-SATLPSLSTHIIDRYLVACEDIGITPFIVLNKVELLSQSERETINQQLKVY 180
Query: 136 ---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GYE LF S ++ G+D L L + +V VG SGVGKSSLIN + P A
Sbjct: 181 NDLGYEVLFTSCKTGEGIDELNAYLDNNVSVFVGQSGVGKSSLINKVL--PGA------- 231
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
D GEVS SG G+HTT LL L GG L D+PG + L +
Sbjct: 232 -------------DILTGEVSDNSGLGQHTTTAAKLLHLPAGGDLIDSPGVREFGLWHIP 278
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLL 304
+ + F E ++ L C F +C HL +PGC++ K + ER+ Y ++L
Sbjct: 279 TERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCILREAVEEGKINAERFASYHKIL 332
>gi|386087399|ref|YP_006003273.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus ND03]
gi|387910494|ref|YP_006340800.1| ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus MN-ZLW-002]
gi|312279112|gb|ADQ63769.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus ND03]
gi|387575429|gb|AFJ84135.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus MN-ZLW-002]
Length = 290
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 144/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++KV+LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKVDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + G +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHSGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|373469060|ref|ZP_09560277.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371765152|gb|EHO53498.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 305
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 35/303 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G + + +R ++ P VAN+
Sbjct: 31 ERKGQIFSCKAKGIFRNIGMKPLVGDNVDFEITDIRDLEGNVVKIHKRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ +++ P + L ++L+ + GI + + NK +L + + + + G+
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIRVDICWNKTDLNEAKAIE-YAEIYENVGF 149
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S +++ GLD L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 150 KNIMASTKTEGGLDKLREALKGEVSVLAGASGVGKSSITNIL--APKA------------ 195
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 --------NMDTNTVSRKIERGRHTTRHSELFMIDDDTFVFDTPGFTSVESPTFDKEELR 247
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F E + KC F C+H+ EP C VK E RYQ Y ++ +E+ R
Sbjct: 248 FHFHEFDKY-----EGKCRFAGCVHINEPECAVKKALEIGSISKIRYQSYKKMYEELSER 302
Query: 311 EEF 313
++
Sbjct: 303 RKY 305
>gi|431794635|ref|YP_007221540.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784861|gb|AGA70144.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 297
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 144/296 (48%), Gaps = 44/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQEFLPGDRVKI--LPGTGIKATIEEVEPRRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS-------RLHTWGYE 138
P+ + L R +++ I + +NK++L + + K+ GY+
Sbjct: 83 YVSPEPDLNLLDRLIIQVTDAQIKPVIIMNKLDLASTQADPSGKTIAADGMDFYRELGYD 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S +++ GL L +++ + TV+ GPSGVGKSSL+NAL SP
Sbjct: 143 LIKVSTKTREGLVELQEQINGKVTVLAGPSGVGKSSLLNAL--SPDL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L ++ ++ L
Sbjct: 188 -------ELKTGDVSQKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPEMKREELTD 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
F E + + KC F NC+H EP C VK RY++Y Q L+E+
Sbjct: 240 YFVEFRGAV-----GKCRFANCMHHKEPDCAVKAAVASGMIHPSRYEHYGQFLEEV 290
>gi|440715494|ref|ZP_20896039.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SWK14]
gi|436439519|gb|ELP32946.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SWK14]
Length = 386
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 101 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 160
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 161 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 217
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 218 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV- 276
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +GKHTT L+PL+ GG + DT
Sbjct: 277 ---------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFDT 315
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + C + +CLHL E C VK D
Sbjct: 316 PGIRQFQLWDISASEVAGLMPDLRPYVSG-----CRYPDCLHLAEDDCAVKNAVADARID 370
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 371 ARRYDAYCHLLEE 383
>gi|332139960|ref|YP_004425698.1| GTPase RsgA [Alteromonas macleodii str. 'Deep ecotype']
gi|410860151|ref|YP_006975385.1| GTPase RsgA [Alteromonas macleodii AltDE1]
gi|327549982|gb|AEA96700.1| GTPase RsgA [Alteromonas macleodii str. 'Deep ecotype']
gi|410817413|gb|AFV84030.1| GTPase RsgA [Alteromonas macleodii AltDE1]
Length = 347
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 145/298 (48%), Gaps = 48/298 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI--------LDPPVAN 76
V R +++ V+ GDKV D + RG+IE V R + + + P AN
Sbjct: 62 VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVRGVIEIVKDRHSVLTRPDYYDGIKPIAAN 121
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ S+ P L + R+LV E GI + LNKVEL+ +E T +L T+
Sbjct: 122 IDRIIVVSSI-LPSLSLNIIDRYLVACEDIGITPLIVLNKVELLSDEERATVTEQLKTYE 180
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GYE LF S ++ G+++L + L D +V VG SGVGKSSLIN + P A
Sbjct: 181 KLGYEVLFTSCKTGEGINTLNEYLNDNISVFVGQSGVGKSSLINQVL--PDA-------- 230
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D+ G++S SG G+HTT LL L GG L D+PG + L +
Sbjct: 231 ------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLIDSPGVREFGLWHIPV 278
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLL 304
+ + F E ++ L C F +C HL +PGC++ K ER+ Y ++L
Sbjct: 279 ERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCLLREAVEEGKISAERFDSYHRIL 331
>gi|422872358|ref|ZP_16918851.1| GTP-binding protein [Streptococcus sanguinis SK1087]
gi|328944608|gb|EGG38769.1| GTP-binding protein [Streptococcus sanguinis SK1087]
Length = 292
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVIIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDAYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|325567728|ref|ZP_08144339.1| ribosome small subunit-dependent GTPase A [Enterococcus
casseliflavus ATCC 12755]
gi|420264357|ref|ZP_14766988.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. C1]
gi|325158501|gb|EGC70648.1| ribosome small subunit-dependent GTPase A [Enterococcus
casseliflavus ATCC 12755]
gi|394768330|gb|EJF48258.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. C1]
Length = 294
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 133/280 (47%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVVVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ + + C F
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAV-----ASNCRF 245
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C+HL EP C VK RY+ Y Q L+EI R
Sbjct: 246 RECMHLNEPDCAVKQGVAANEIAETRYKNYVQFLEEIENR 285
>gi|422885089|ref|ZP_16931537.1| GTP-binding protein [Streptococcus sanguinis SK49]
gi|332358476|gb|EGJ36301.1| GTP-binding protein [Streptococcus sanguinis SK49]
Length = 292
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + L+K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKQIHPIIYLSKLDLLEDEQSLDIYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|418027634|ref|ZP_12666257.1| Hydrolase acting on phosphorous-containing anhydrides
[Streptococcus thermophilus CNCM I-1630]
gi|354690688|gb|EHE90631.1| Hydrolase acting on phosphorous-containing anhydrides
[Streptococcus thermophilus CNCM I-1630]
Length = 290
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N++
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNINQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + WE RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWEVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 IYKKTIKRK 290
>gi|257899953|ref|ZP_05679606.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257837865|gb|EEV62939.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 299
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 139/294 (47%), Gaps = 47/294 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ + + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPLIFLTKTDLSDDPKTIEEIKQTYTKIGYPVI---VPNHAGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV LLP+ GG +ADTPGF+ L + L + FPE E A C F
Sbjct: 194 RGRHTTRHVELLPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SAHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C+H EPGC VK E RY Y Q L EI R+ TK+EG
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMY-----TKKEG 296
>gi|422857543|ref|ZP_16904193.1| GTP-binding protein [Streptococcus sanguinis SK1057]
gi|327462726|gb|EGF09048.1| GTP-binding protein [Streptococcus sanguinis SK1057]
Length = 292
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSAKK--DSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|371778637|ref|ZP_09484959.1| GTPase RsgA [Anaerophaga sp. HS1]
Length = 308
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 133/286 (46%), Gaps = 48/286 (16%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSMDQ 88
V VGD+V+ S+D + G+IE + +R I+ AN+D +L+ +++
Sbjct: 43 VAVGDRVIF-SVDEKNGIGIIEEILERKNYIVRRASNLSRQTQILAANIDQAILVATINY 101
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P P + RFL E+ IP T+ NK++ D + K + + GY L S +
Sbjct: 102 PVTTPVFIDRFLATTEAYDIPTTIIFNKIDRYDHYHKDQLKETIQIYNNIGYNVLVTSAK 161
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+++ +++ G SGVGKS+LIN + EP L K
Sbjct: 162 HDQNIDLVRELLKNKVSLLAGHSGVGKSTLINRV----------------EPTLNLK--- 202
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
++S G+HTT + PL GGY+ DTPG L + K+ LA F EI +
Sbjct: 203 ---TAKISDAHNTGRHTTTFTEMHPLGIGGYIIDTPGIRGFGLFNIKKEELAHFFREIFK 259
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
++C ++NC HL EPGC VK E RY Y ++
Sbjct: 260 F-----SSQCRYHNCTHLHEPGCAVKDAVEKGNIALSRYNSYVRIF 300
>gi|385260044|ref|ZP_10038198.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK140]
gi|385192718|gb|EIF40114.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK140]
Length = 292
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWV------DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWV + G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVEFSAEENSEGYILEIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIATFRFDNYLQFLSEIENRRE 281
>gi|379730826|ref|YP_005323022.1| GTPase RsgA [Saprospira grandis str. Lewin]
gi|378576437|gb|AFC25438.1| GTPase RsgA [Saprospira grandis str. Lewin]
Length = 312
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 138/295 (46%), Gaps = 48/295 (16%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLL 83
K+ V VGD+V+ ++ GMI + R +L N+D LL+
Sbjct: 37 KLTNPVAVGDEVLFEQEKGLET-GMIHKILPRQNYVLRRSTRQKHHQHLIACNLDQALLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPL 140
++ +P ++ + RFL+ E+ IP + LNK +L DE E+ K GY+
Sbjct: 96 VTLREPNVKLGFIDRFLLTTEAYSIPTYIILNKADLYDEGDLEMYEGLKILYGRAGYQTR 155
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S E+ GL+ L L+D+ ++ G SGVGKSSLIN+L P LG
Sbjct: 156 LVSAETGEGLEELQLLLKDKRSLFSGHSGVGKSSLINSL----------------APGLG 199
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
R GEVS + +G HTT L L GG + DTPG + L + Q +A F
Sbjct: 200 ------LRTGEVSDYTQKGMHTTTFAELFTLPQGGEIIDTPGIKELGFLNLEPQDVAHNF 253
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
PEI E K C +NNCLH+ EP C VK E RYQ Y +++EI+
Sbjct: 254 PEIFEASK-----NCKYNNCLHINEPHCAVKAGLETGEIHELRYQSYLSIMEEIQ 303
>gi|403069234|ref|ZP_10910566.1| GTPase RsgA [Oceanobacillus sp. Ndiop]
Length = 293
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 138/296 (46%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K LVGD V + + G I + +R E++ PP+AN++ +++ S
Sbjct: 25 CKGRGVFRNRKITPLVGDFVQFEESNPGE--GYIMEIAERENELIRPPIANINQAIIVSS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
P L RFLV ES I + + K++L+ EE + +K GY
Sbjct: 83 AVSPDFSTVLLDRFLVLIESKHIQPLIFITKIDLISEEERRQIEEFKGIYENIGYTVELL 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + L L + D+ +V G SGVGKSSL+N L+ S A
Sbjct: 143 SSKEPDSLPDLEEYFADKVSVFAGQSGVGKSSLLNVLKPSLLLKTA-------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L+ ++ G +ADTPGF+ ++ + L FPE
Sbjct: 189 --------EISKSLGRGKHTTRHVELMQIN-RGLVADTPGFSILDFSEIEAEELTDCFPE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
+++ + +C F C+H EP C VK E RY +Y L+EI+ R+
Sbjct: 240 MRDRRE-----QCKFRGCMHHKEPKCAVKEAVEKEEIPQFRYDHYLSFLEEIQSRK 290
>gi|163753011|ref|ZP_02160135.1| ribosome-associated GTPase [Kordia algicida OT-1]
gi|161326743|gb|EDP98068.1| ribosome-associated GTPase [Kordia algicida OT-1]
Length = 317
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 145/312 (46%), Gaps = 55/312 (17%)
Query: 21 GVELLCVVRAL--LKKIKRR--VLVGDKVVVGSIDWVD-RRGMIENVFQRSTEILDPPV- 74
G E C ++ LK IK + VGDKV D G+I+ +F R I+ V
Sbjct: 20 GKEYECRIKGKFRLKGIKSTNPIAVGDKVNFTLETNNDVETGIIDEIFDRKNYIIRKSVN 79
Query: 75 ---------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--- 122
AN+D + LL ++D P P + RFLV AE+ IP LA NK++ E
Sbjct: 80 LSKQTHIIAANIDQVFLLITIDNPPTFPSFIDRFLVTAEAYSIPCVLAFNKIDSYTEIER 139
Query: 123 --EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
EV+ K GYE + S + + +D++ +R++ ++ G SGVGKS+L+NA+
Sbjct: 140 RAEVM-YLKDIYENIGYECIEISAKEQKNVDAIKERMKGTVSMFAGHSGVGKSTLVNAI- 197
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P + + E+S + +G+HTT + L G + DT
Sbjct: 198 -APEL--------------------NLKTKEISEQHKQGQHTTTFAEMFDLKFGAKIIDT 236
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG ++ + K+ + FPE + NE C FNNC+H+ EP C +K
Sbjct: 237 PGIKGFGIVDMEKEEVGDYFPEFFAL--KNE---CKFNNCIHIEEPKCAIKDAVEEGEIA 291
Query: 294 WERYQYYFQLLD 305
W RY+ Y Q+++
Sbjct: 292 WSRYKSYLQIIE 303
>gi|326803895|ref|YP_004321713.1| ribosome small subunit-dependent GTPase A [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651668|gb|AEA01851.1| ribosome small subunit-dependent GTPase A [Aerococcus urinae
ACS-120-V-Col10a]
Length = 310
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 134/290 (46%), Gaps = 40/290 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L +K + LVGD V + + G++ V +R E+ PPVAN+D ++ S+
Sbjct: 35 ARGLFRKEQLTPLVGDYVSFQADN--PHEGVLTAVKERKNELDRPPVANIDLAFVVASVT 92
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
QP + + R LV +ES I L +K++L+DE E L + + GY+ L
Sbjct: 93 QPHIPSKLIDRMLVYSESQRIQPALYFSKLDLLDEAEREELRPLLANYQSLGYQVLTNLA 152
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ D L + +T +G SGVGK++L+N L H AA
Sbjct: 153 LAQANDDLLTELFHGKTIAAMGQSGVGKTTLLNHLLPDLHKETAA--------------- 197
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
+S GRGKHTTRHV L + GG L DTPGF+ SL + K+ L FPE++
Sbjct: 198 -------ISKGMGRGKHTTRHVELHDVYGGK-LVDTPGFSSLSLDSIEKEDLGDYFPEMR 249
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
E C F C H EP C +K RY +Y + L EI
Sbjct: 250 E-----RSDFCKFRECSHTHEPQCAIKAALAAGEISQSRYDHYVEFLQEI 294
>gi|323350564|ref|ZP_08086226.1| GTP-binding protein [Streptococcus sanguinis VMC66]
gi|322123246|gb|EFX94931.1| GTP-binding protein [Streptococcus sanguinis VMC66]
Length = 292
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI+ R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIKNRRE 281
>gi|257877697|ref|ZP_05657350.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257811863|gb|EEV40683.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 294
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 132/280 (47%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVVVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ + A C F
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAV-----AANCRF 245
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
C HL EP C VK RY+ Y Q L+EI R
Sbjct: 246 RECRHLNEPDCAVKQGVAANEIAETRYKNYVQFLEEIENR 285
>gi|224476330|ref|YP_002633936.1| hypothetical protein Sca_0841 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254766840|sp|B9DPK4.1|RSGA_STACT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|222420937|emb|CAL27751.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 291
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 140/294 (47%), Gaps = 42/294 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD +V I+ V G I++V +R E+ PPV+N+DHL+++ S +
Sbjct: 28 RGLFRKKKFSPIVGD-IVDFEIENVTE-GYIQHVHERQNELKRPPVSNIDHLVIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P + RFLV A S G+ + + K ++ + + + L + GY F V
Sbjct: 86 PDFSTQLVDRFLVIAHSYGLNPRIVVTKKDMASDSQIERIEKDLDVYRAIGYPVQF--VG 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++++ V+ G SGVGKS+L+NA R P L +
Sbjct: 144 KNDNIETIFDEWGSGLAVLSGQSGVGKSTLLNAYR----------------PDLAIE--- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
++S RGKHTTRHV L GG++ADTPGF+ + K + F EI+E
Sbjct: 185 ---TNQISKSLNRGKHTTRHVELFERK-GGFVADTPGFSALDFDHIHKDEVKDYFLEIQE 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+ C F NC H+ EP C VK E RY +Y QL +EI R+E
Sbjct: 241 YGQG-----CKFRNCNHIKEPQCNVKAQVEAGNIAQFRYDHYVQLFEEIANRKE 289
>gi|29377575|ref|NP_816729.1| hypothetical protein EF3119 [Enterococcus faecalis V583]
gi|227554539|ref|ZP_03984586.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|257088230|ref|ZP_05582591.1| ribosome-associated GTPase YjeQ [Enterococcus faecalis D6]
gi|257417963|ref|ZP_05594957.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|422713876|ref|ZP_16770624.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309A]
gi|422718499|ref|ZP_16775152.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309B]
gi|422723546|ref|ZP_16780081.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2137]
gi|38257438|sp|Q82ZE1.1|RSGA_ENTFA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|29345042|gb|AAO82799.1| conserved hypothetical protein TIGR00157 [Enterococcus faecalis
V583]
gi|227176337|gb|EEI57309.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|256996260|gb|EEU83562.1| ribosome-associated GTPase YjeQ [Enterococcus faecalis D6]
gi|257159791|gb|EEU89751.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|315026434|gb|EFT38366.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2137]
gi|315573267|gb|EFU85458.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309B]
gi|315581159|gb|EFU93350.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309A]
Length = 297
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 132/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQQVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|422824472|ref|ZP_16872659.1| GTP-binding protein [Streptococcus sanguinis SK405]
gi|422825448|ref|ZP_16873627.1| GTP-binding protein [Streptococcus sanguinis SK678]
gi|422856574|ref|ZP_16903230.1| GTP-binding protein [Streptococcus sanguinis SK1]
gi|422863492|ref|ZP_16910123.1| GTP-binding protein [Streptococcus sanguinis SK408]
gi|324992521|gb|EGC24442.1| GTP-binding protein [Streptococcus sanguinis SK405]
gi|324995950|gb|EGC27861.1| GTP-binding protein [Streptococcus sanguinis SK678]
gi|327460745|gb|EGF07080.1| GTP-binding protein [Streptococcus sanguinis SK1]
gi|327472466|gb|EGF17897.1| GTP-binding protein [Streptococcus sanguinis SK408]
Length = 292
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVVKATEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|229547456|ref|ZP_04436181.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|255974269|ref|ZP_05424855.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618126|ref|ZP_05474972.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761056|ref|ZP_05501636.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854790|ref|ZP_05560154.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958396|ref|ZP_05562567.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960465|ref|ZP_05564636.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962958|ref|ZP_05567129.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257078293|ref|ZP_05572654.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257083207|ref|ZP_05577568.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|293385123|ref|ZP_06630949.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R712]
gi|293389096|ref|ZP_06633568.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
S613]
gi|294779984|ref|ZP_06745364.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
PC1.1]
gi|307270566|ref|ZP_07551864.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4248]
gi|307273618|ref|ZP_07554846.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0855]
gi|307276660|ref|ZP_07557778.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2134]
gi|307284856|ref|ZP_07565012.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0860]
gi|307288884|ref|ZP_07568857.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0109]
gi|307292136|ref|ZP_07572002.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0411]
gi|312902131|ref|ZP_07761391.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0470]
gi|312906693|ref|ZP_07765693.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 512]
gi|312910845|ref|ZP_07769681.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 516]
gi|397701264|ref|YP_006539052.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
D32]
gi|421513181|ref|ZP_15959964.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus
faecalis ATCC 29212]
gi|422687004|ref|ZP_16745194.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4000]
gi|422696073|ref|ZP_16754050.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4244]
gi|422698509|ref|ZP_16756401.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1346]
gi|422700445|ref|ZP_16758292.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1342]
gi|422704090|ref|ZP_16761905.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1302]
gi|422720855|ref|ZP_16777462.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0017]
gi|422728587|ref|ZP_16784995.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0012]
gi|422736047|ref|ZP_16792312.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1341]
gi|424674080|ref|ZP_18111006.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
599]
gi|424759063|ref|ZP_18186736.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R508]
gi|229307488|gb|EEN73475.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|255967141|gb|EET97763.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597653|gb|EEU16829.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256682307|gb|EEU22002.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256710350|gb|EEU25394.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256948892|gb|EEU65524.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950961|gb|EEU67593.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953454|gb|EEU70086.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256986323|gb|EEU73625.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256991237|gb|EEU78539.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|291077600|gb|EFE14964.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R712]
gi|291081564|gb|EFE18527.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
S613]
gi|294452965|gb|EFG21387.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
PC1.1]
gi|306496789|gb|EFM66340.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0411]
gi|306500156|gb|EFM69500.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0109]
gi|306503115|gb|EFM72372.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0860]
gi|306506770|gb|EFM75922.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2134]
gi|306509631|gb|EFM78673.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0855]
gi|306513147|gb|EFM81781.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4248]
gi|310627341|gb|EFQ10624.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 512]
gi|311288868|gb|EFQ67424.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 516]
gi|311290795|gb|EFQ69351.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0470]
gi|315028358|gb|EFT40290.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4000]
gi|315031804|gb|EFT43736.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0017]
gi|315146587|gb|EFT90603.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4244]
gi|315150896|gb|EFT94912.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0012]
gi|315164411|gb|EFU08428.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1302]
gi|315167219|gb|EFU11236.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1341]
gi|315171203|gb|EFU15220.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1342]
gi|315172958|gb|EFU16975.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1346]
gi|397337903|gb|AFO45575.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
D32]
gi|401673721|gb|EJS80096.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus
faecalis ATCC 29212]
gi|402352024|gb|EJU86889.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
599]
gi|402405239|gb|EJV37837.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R508]
Length = 297
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 132/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|221133714|ref|ZP_03560019.1| ribosome-associated GTPase [Glaciecola sp. HTCC2999]
Length = 340
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 154/316 (48%), Gaps = 52/316 (16%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVG-SIDWVDRR-GMIENVFQRSTEI 69
+ ++ D+ GV+ C +R + V+ GD VV SI R G+IE V R T +
Sbjct: 47 KHANVEDEQGVQHKCHIRRTINS----VVCGDSVVFCPSISSEPRDLGVIEIVHDRKTVL 102
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L P + R+LV E I + +NK+EL++
Sbjct: 103 TRPDFYDGVKPIAANIDQIIIVSSI-VPTLSPHIIDRYLVACEDVQIQPVIVVNKMELLN 161
Query: 122 EE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE ++ + H GY+ L S + G+D L + L D +V VG SGVGKSSL+N
Sbjct: 162 EEDREMVIELLTIYHEIGYKVLLTSCVTGEGIDELAKLLTDNISVFVGQSGVGKSSLVNQ 221
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ VG++S SG G HTT LL + GG +
Sbjct: 222 LL--PEA--------------------DEVVGDISDNSGLGTHTTTTAKLLHFTQGGDVI 259
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------ 292
D+PG + SL + ++ + + F E ++ L C F +C H +PGC+++
Sbjct: 260 DSPGVREFSLWHLPEEQITRGFIEFRDYL-----GGCKFRDCKHGDDPGCLIRAAVIDGD 314
Query: 293 -DWERYQYYFQLLDEI 307
D RY+ Y +++D +
Sbjct: 315 IDEARYESYHKIIDSM 330
>gi|430835064|ref|ZP_19453063.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0679]
gi|430484732|gb|ELA61694.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0679]
Length = 299
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 138/292 (47%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SGVGKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGVGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|335429780|ref|ZP_08556678.1| GTPase RsgA [Haloplasma contractile SSD-17B]
gi|334889790|gb|EGM28075.1| GTPase RsgA [Haloplasma contractile SSD-17B]
Length = 295
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 40/293 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K LVGD+V D G I + +R ++ PPVANVD +LL+FS
Sbjct: 27 CRGRGNFRNKKLTPLVGDQVEFQIEDH--DEGYILKLLKRKNSLVRPPVANVDQVLLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFL E GI + ++K++L++E + K+ + GY +
Sbjct: 85 AKDPDFSQHLLDRFLTVIEHVGIEPVIIVSKIDLLEEVEYDKLKTLFEYYREIGYTVIEQ 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++K L+ ++ + +V+ G SGVGKSS++NA+ +P + D+
Sbjct: 145 SAKTKANLEHVIDVINGNISVLAGQSGVGKSSMLNAI--NPEFNIKTDI----------- 191
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S RGKHTTRHV LL + G +ADTPGF+ L++ K+ L F +
Sbjct: 192 ---------ISKALNRGKHTTRHVELLTVY-DGLIADTPGFSSLEFLEMEKEDLPGCFID 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIR 308
+ ++ C F C H+ EP C VK +RY +Y + +E++
Sbjct: 242 FARIGES-----CKFRGCFHINEPKCEVKNRLGEHDVYDKRYAHYSKFYEELK 289
>gi|260887292|ref|ZP_05898555.1| ribosome small subunit-dependent GTPase A [Selenomonas sputigena
ATCC 35185]
gi|260862928|gb|EEX77428.1| ribosome small subunit-dependent GTPase A [Selenomonas sputigena
ATCC 35185]
Length = 300
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 139/289 (48%), Gaps = 40/289 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LKK + V+ GD V + + G+IE +R + + P VAN+D ++L+F+
Sbjct: 33 LRGRLKKERIAVVPGDDVELELTE--GGAGVIERRCERKSLLRRPLVANIDQVVLVFAAR 90
Query: 88 QPKLEPFALTRFLVEAESTGIP-LTLALNKVELV--DEEVLNTWKSRLHTWGYEPLFCSV 144
+P + P + RFLV AE + I + L +NK++L+ DE + + GY S
Sbjct: 91 EPDINPVLIDRFLVLAEWSKIERIVLCINKMDLLEGDEAEIPALAALYREIGYPVCLLST 150
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ + + ++T+V G SGVGKSSL+N L S
Sbjct: 151 VTGEGVADMQSLVEEKTSVFAGSSGVGKSSLLNCLAPGIALS------------------ 192
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G VS K RG+HTTR LLP + GG+L DTPGF+ L ++ +L FPE +
Sbjct: 193 ----TGAVSEKIKRGRHTTRTAQLLPFA-GGFLVDTPGFSATELAEIEPCALPGLFPEFR 247
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDE 306
A C F C H EPGC VK G E RY Y ++L +
Sbjct: 248 SFFGA-----CRFQPCTHSHEPGCAVKEAVQAGRIEDSRYASYLEMLQQ 291
>gi|124008090|ref|ZP_01692789.1| ribosome small subunit-dependent GTPase A [Microscilla marina ATCC
23134]
gi|123986504|gb|EAY26310.1| ribosome small subunit-dependent GTPase A [Microscilla marina ATCC
23134]
Length = 308
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 142/314 (45%), Gaps = 51/314 (16%)
Query: 15 DCNDKTGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL 70
D ++G + C +R K K+ + VGD VV D + G+I + R I+
Sbjct: 15 DVRSESGEIIKCRLRGKFKIKGLKVSNPLAVGDWVVYEMEDAGEGTGVITKIETRENYII 74
Query: 71 DPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
V AN+D +L+ ++ PK + RFLV AES IP + NKV+L+
Sbjct: 75 RQSVHKTGHGHIIAANLDQAILIATLAYPKTSLGFIDRFLVSAESFRIPTKIIFNKVDLL 134
Query: 121 DEEVLNTW---KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
DE +L + K+ GYE S G++ L +Q +++ G SGVGKS+L+N
Sbjct: 135 DEAMLEEYAYLKAVYEPLGYECFLTSATEGQGMEEFKSLLHNQKSLLSGHSGVGKSTLVN 194
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ P L D R E+S S +G HTT + + ++
Sbjct: 195 AI----------------APEL------DIRTSEISDFSHKGVHTTTFAEMHEIFPDSFI 232
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
DTPG + LL + Q L FPE++ +L +C FN+C+H+ EP C V E
Sbjct: 233 IDTPGIRELGLLNIKPQELGHYFPEMRALLN-----ECKFNDCIHVNEPQCAVMAAVEEG 287
Query: 296 -----RYQYYFQLL 304
RY+ Y +L
Sbjct: 288 LIAPDRYESYLSML 301
>gi|330838954|ref|YP_004413534.1| ribosome biogenesis GTPase RsgA [Selenomonas sputigena ATCC 35185]
gi|329746718|gb|AEC00075.1| ribosome biogenesis GTPase RsgA [Selenomonas sputigena ATCC 35185]
Length = 293
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 139/289 (48%), Gaps = 40/289 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LKK + V+ GD V + + G+IE +R + + P VAN+D ++L+F+
Sbjct: 26 LRGRLKKERIAVVPGDDVELELTE--GGAGVIERRCERKSLLRRPLVANIDQVVLVFAAR 83
Query: 88 QPKLEPFALTRFLVEAESTGIP-LTLALNKVELV--DEEVLNTWKSRLHTWGYEPLFCSV 144
+P + P + RFLV AE + I + L +NK++L+ DE + + GY S
Sbjct: 84 EPDINPVLIDRFLVLAEWSKIERIVLCINKMDLLEGDEAEIPALAALYREIGYPVCLLST 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ + + ++T+V G SGVGKSSL+N L S
Sbjct: 144 VTGEGVADMQSLVEEKTSVFAGSSGVGKSSLLNCLAPGIALS------------------ 185
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G VS K RG+HTTR LLP + GG+L DTPGF+ L ++ +L FPE +
Sbjct: 186 ----TGAVSEKIKRGRHTTRTAQLLPFA-GGFLVDTPGFSATELAEIEPCALPGLFPEFR 240
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDE 306
A C F C H EPGC VK G E RY Y ++L +
Sbjct: 241 SFFGA-----CRFQPCTHSHEPGCAVKEAVQAGRIEDSRYASYLEMLQQ 284
>gi|315917488|ref|ZP_07913728.1| GTPase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059005|ref|ZP_07923490.1| GTPase [Fusobacterium sp. 3_1_5R]
gi|313684681|gb|EFS21516.1| GTPase [Fusobacterium sp. 3_1_5R]
gi|313691363|gb|EFS28198.1| GTPase [Fusobacterium gonidiaformans ATCC 25563]
Length = 268
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 43/292 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R +LKK + + VVG + I ++ R ++ P VAN+D+L + F+
Sbjct: 1 MRGILKKKENK----HNCVVGDYVEISEENSIIEIYPRKNQLTRPVVANIDYLAIQFAAK 56
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSV 144
P L+ F L L+ + + + +NK++L+ E L + + H F S
Sbjct: 57 NPILDFFRLHMLLLHSMYEKVCPCIIINKIDLLTEIELQDLQQQFHFLKDLSIPIFFISQ 116
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ ++G++ L + +++ T I GPSGVGKSSLIN L+ +
Sbjct: 117 KEQIGIEVLKEFFQNKITAIGGPSGVGKSSLINLLQEA---------------------- 154
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLAQTFPEI 263
++ GE+S K RGKHTTR LL L GGY+ DTPGF+ L L + L + FPE
Sbjct: 155 KELETGEISKKLQRGKHTTRDTRLLALPQGGYIIDTPGFSSLELPLIENFEQLMKLFPE- 213
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIR 308
+ +P C F +C H+ EP C V K ERYQ++ + +++
Sbjct: 214 ---FEVGKP--CKFGDCHHIHEPSCAVRKAVEDGKISQERYQFFTNIYHKLK 260
>gi|425055276|ref|ZP_18458757.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
505]
gi|403034218|gb|EJY45682.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
505]
Length = 299
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 139/298 (46%), Gaps = 55/298 (18%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLFCSVESKLG-LDSL 153
LV E I + L K +L D EE+ T+ GY + V + G L
Sbjct: 99 LVTLEYESIEPLIFLTKTDLSDDPKKIEEIKETYTK----IGYPVI---VPNHAGDTTEL 151
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
++ ++ +V +G SG GKS+L+N + SP + A GE+S
Sbjct: 152 IRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEIS 189
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV LLP+ GG +ADTPGF+ L + L FPE E A
Sbjct: 190 DALGRGRHTTRHVELLPIY-GGLVADTPGFSSIDFLTIEAGELPSQFPEFVEA-----SA 243
Query: 274 KCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C F C+H EPGC VK E RY Y Q L EI R + TK+EG
Sbjct: 244 HCKFRECMHAKEPGCEVKHRVETGDIAQARYDNYLQFLQEIEKR-----KPMYTKKEG 296
>gi|302797308|ref|XP_002980415.1| hypothetical protein SELMODRAFT_444482 [Selaginella moellendorffii]
gi|300152031|gb|EFJ18675.1| hypothetical protein SELMODRAFT_444482 [Selaginella moellendorffii]
Length = 273
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 30/226 (13%)
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L +++P+L+P + RFLVE ESTGIPL + L+K +LV +E+ ++W+ +L GY+
Sbjct: 14 LASGINRPRLDPVIMNRFLVEGESTGIPLAVVLSKADLVTQEMKDSWEKQLMESGYKLYI 73
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
CSVE+ +GL D+T+ + GPSGV KSSLIN LR + P
Sbjct: 74 CSVETGMGLH------EDKTSAVFGPSGVRKSSLINFLRG----------KSCLPP---- 113
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ Q + EV + RG+HT RH+S L+ LADTPGF+ PSL VT+ SLA FP
Sbjct: 114 --DDIQALDEVDNEVIRGRHTMRHIS---LASAIMLADTPGFSYPSLSMVTRNSLALLFP 168
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEI 307
+ + P S + E C++ + Q +L+DEI
Sbjct: 169 QT-----GSRPGYNSRRLKISTKEEQCLISSADKSVQEMDRLIDEI 209
>gi|206895622|ref|YP_002246731.1| ribosome small subunit-dependent GTPase A [Coprothermobacter
proteolyticus DSM 5265]
gi|206738239|gb|ACI17317.1| ribosome small subunit-dependent GTPase A [Coprothermobacter
proteolyticus DSM 5265]
Length = 289
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 136/283 (48%), Gaps = 42/283 (14%)
Query: 35 IKRRVLVGDKVVVGSIDW----VDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPK 90
+K++V DKV+V W D +E R L PPVAN+D L+ + S P+
Sbjct: 30 VKKKVWEQDKVLVNDRVWFEPITDTEVSVERTTGRKNYFLRPPVANLDLLVYVHSFKNPQ 89
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150
+ L L A IP+ + +K +L+ +E + W S + GY+ + SV L
Sbjct: 90 CDVRYLDLTLGLATLQNIPVLVLFHKADLLRDEDIQPWTSLYTSLGYDVMVTSVYYDLS- 148
Query: 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210
+L +RLR +T + GP+GVGKSSL+ AL DA+ RVG
Sbjct: 149 -ALKERLRGKTVLFSGPTGVGKSSLVKAL-----WKDAS-----------------VRVG 185
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270
++S K GRGKHTT V LLPL Y+ D PGF+ + + + + FPEI+ K
Sbjct: 186 DIS-KVGRGKHTTSWVELLPLD-DTYVVDAPGFSLLEMPAMNPWDIQRMFPEIETTAKG- 242
Query: 271 EPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
C F++CLHL EP C VK + RY Y LD+
Sbjct: 243 ----CFFSDCLHLKEPSCAVKEAVKKGLIAESRYNSYLYFLDK 281
>gi|32472253|ref|NP_865247.1| GTPase [Rhodopirellula baltica SH 1]
gi|32443489|emb|CAD72931.1| conserved hypothetical protein-putative GTPase [Rhodopirellula
baltica SH 1]
Length = 386
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 101 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 160
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 161 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 217
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 218 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV- 276
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +GKHTT L+PL+ GG + DT
Sbjct: 277 ---------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFDT 315
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + C + +CLHL E C VK D
Sbjct: 316 PGIRQFQLWDISAGEVAGLMPDLRPYVSG-----CRYPDCLHLAEDDCAVKTAVADARID 370
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 371 ARRYDAYCHLLEE 383
>gi|257080482|ref|ZP_05574843.1| ribosome-associated GTPase [Enterococcus faecalis E1Sol]
gi|256988512|gb|EEU75814.1| ribosome-associated GTPase [Enterococcus faecalis E1Sol]
Length = 297
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 132/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPDLQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|422850716|ref|ZP_16897386.1| GTP-binding protein [Streptococcus sanguinis SK150]
gi|325695464|gb|EGD37364.1| GTP-binding protein [Streptococcus sanguinis SK150]
Length = 292
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIEERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQAIGYEVLKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|373495021|ref|ZP_09585614.1| ribosome small subunit-dependent GTPase A [Eubacterium infirmum
F0142]
gi|371966690|gb|EHO84174.1| ribosome small subunit-dependent GTPase A [Eubacterium infirmum
F0142]
Length = 289
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 145/293 (49%), Gaps = 38/293 (12%)
Query: 29 RALLKKIKRRVLVGDKV-VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L KK ++VGD+V ++ S D + +IE ++ R + P +ANVD ++++ ++
Sbjct: 27 RGLFKKSNNTLMVGDEVELIISKDG-ESDSLIEKIYPRKNCFVRPAIANVDQIIVVTAIS 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
+P+ + + LV AE I L + K +L + +L+ S ++ Y+ + +
Sbjct: 86 EPEPSFEIIDKMLVNAEMNLIKPMLCITKPDLDQKGLLDQILS-IYKPIYKCFVVNGRTG 144
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
G+D L L+++ T ++GPSGVGKSS+ N + SP A
Sbjct: 145 EGVDDLKASLKNKKTALMGPSGVGKSSITNLI--SPCAL--------------------M 182
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
G++S K+ RGKHTTRH+ + GGY+ DTPGF V + L+ FPE
Sbjct: 183 ETGDISDKTRRGKHTTRHIEIFSCQ-GGYIYDTPGFTSLYTEDVEEARLSSFFPEF---- 237
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
++ C F+NC H+ EP C +K E RY Y ++DEI+ + F
Sbjct: 238 -VDKSRGCRFDNCRHINEPECEIKSAVESAEIAKTRYDSYLSMIDEIKRNKRF 289
>gi|431797199|ref|YP_007224103.1| ribosome small subunit-dependent GTPase A [Echinicola vietnamensis
DSM 17526]
gi|430787964|gb|AGA78093.1| ribosome small subunit-dependent GTPase A [Echinicola vietnamensis
DSM 17526]
Length = 309
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 41/246 (16%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
+N+D L+ ++ QP+ + RF+V ES IP T+ +NK++LV +E + +H
Sbjct: 87 ASNIDQAFLVVTLKQPRTSLGFIDRFIVSTESFRIPTTIVVNKMDLVKKEKDKEFLQDIH 146
Query: 134 TWGYEPLFCSVESKLGLDS------LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
YEPL V LD L +L +TT++ G SGVGKSSL+N + P AS
Sbjct: 147 DI-YEPLGYPVVEISALDDEGLQEVFLPKLSGKTTLLSGHSGVGKSSLLNKI--IPSAS- 202
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
Q EVS+ + +G HTT + PL GGGYL DTPG +
Sbjct: 203 -------------------QTTKEVSSFTSKGVHTTTFAEMFPLEGGGYLIDTPGIKEFG 243
Query: 248 LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYY 300
+L + Q L+ F E+++ L +C +NNC HL EPGC V E RY Y
Sbjct: 244 ILDIDDQELSHYFVEMRKYL-----GQCKYNNCKHLNEPGCKVLEVLEEGYIHPYRYDSY 298
Query: 301 FQLLDE 306
++L E
Sbjct: 299 VKILHE 304
>gi|306830178|ref|ZP_07463362.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis ATCC
6249]
gi|304427704|gb|EFM30800.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis ATCC
6249]
Length = 301
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLEDSEELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 255 HEPACAVKPAVEEGTIVSFRFDNYLQFLSEIENRRE 290
>gi|293553679|ref|ZP_06674303.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1039]
gi|425059189|ref|ZP_18462539.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
504]
gi|291602254|gb|EFF32482.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1039]
gi|403036254|gb|EJY47611.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
504]
Length = 299
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 138/292 (47%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++ L
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGYPVI---VPNHTGDTTELIRYL 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|309798997|ref|ZP_07693254.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1302]
gi|308117401|gb|EFO54820.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1302]
Length = 292
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWV------DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWV + G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVEFSAEENSEGYILEIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELDFYQQTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI + + C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEGLNQAFPEIAYVSR-----DCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVVATFRFDNYLQFLSEIENRRE 281
>gi|327404301|ref|YP_004345139.1| ribosome biogenesis GTPase RsgA [Fluviicola taffensis DSM 16823]
gi|327319809|gb|AEA44301.1| ribosome biogenesis GTPase RsgA [Fluviicola taffensis DSM 16823]
Length = 320
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 151/309 (48%), Gaps = 51/309 (16%)
Query: 20 TGVELLCVVRALLK----KIKRRVLVGDKVVV-------GSIDWVDRRGMIENVFQRSTE 68
TG + C +R L+ K + VGD V++ G VD + ++ST
Sbjct: 23 TGEVVECRIRGRLRLEGLKTTNPISVGDIVILDPKSDEEGKRVIVDYEMRDNYIVRKSTN 82
Query: 69 I---LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
+ + ANVD L+ ++ P+ + RFLV AES IP TL NKV+L+D+E L
Sbjct: 83 LSKQMHILAANVDCAYLMVTLKFPETHFVFIDRFLVAAESFRIPTTLIFNKVDLLDDEGL 142
Query: 126 NTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
K+ + + GY S + + L + ++D+ +I G SG GKS+L+NAL
Sbjct: 143 LDLKAIMFMYESIGYTCHAISATNDKDIQFLREEIKDKQVMIAGHSGTGKSTLVNAL--- 199
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
+P L D R+GE+S +G+HTT + PL GG++ DTPG
Sbjct: 200 -------------DPNL------DLRIGEISAAHHQGQHTTTFAEMHPLQSGGFIIDTPG 240
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK------GDWE- 295
++ + K+ ++ FPE++E++ A C F+NC HL EP C VK G +E
Sbjct: 241 IRAFGIVNLEKEVISHYFPEMRELIGA-----CKFHNCQHLNEPACAVKEAVKNGGIYES 295
Query: 296 RYQYYFQLL 304
RY Y QL+
Sbjct: 296 RYFTYLQLM 304
>gi|417934057|ref|ZP_12577377.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. F0392]
gi|340770627|gb|EGR93142.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. F0392]
Length = 292
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ + GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRSIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIATFRFDNYLQFLSEIENRRE 281
>gi|331265646|ref|YP_004325276.1| ribosome-associated GTPase [Streptococcus oralis Uo5]
gi|326682318|emb|CBY99935.1| ribosome-associated GTPase [Streptococcus oralis Uo5]
Length = 292
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEEYSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L +TTV
Sbjct: 101 HKGIHPVVYISKMDLLEDREELSFYQQTYGDIGYD----FVTSK---EELLPLLTGKTTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPACAVKPAVEKGAIATFRFDNYLQFLSEIENRRE 281
>gi|422877369|ref|ZP_16923839.1| GTP-binding protein [Streptococcus sanguinis SK1056]
gi|332360008|gb|EGJ37822.1| GTP-binding protein [Streptococcus sanguinis SK1056]
Length = 292
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQAIGYEVVKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVEAGQIASFRFDNYLQFLSEIENRRE 281
>gi|225850491|ref|YP_002730725.1| ribosome small subunit-dependent GTPase A [Persephonella marina
EX-H1]
gi|225645853|gb|ACO04039.1| ribosome small subunit-dependent GTPase A [Persephonella marina
EX-H1]
Length = 287
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 136/273 (49%), Gaps = 41/273 (15%)
Query: 42 GDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV 101
GD V+ ID IE+V +R ++ PPVANVD ++++F++ +P + F L LV
Sbjct: 42 GDYVLGNVID--SETFAIESVEERKNFLVRPPVANVDKVIIVFTLKKPDFDSFLLDNLLV 99
Query: 102 EAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
E G + NK++L++++ L WK GY+ + S + G+D+L + ++
Sbjct: 100 VYEYLGAEPVIVFNKIDLLNDDERKELKRWKDIYINAGYDFIPVSAITGEGIDTLKEHIK 159
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
+V GPSGVGKSS+++AL + +V ++S K+ R
Sbjct: 160 GNISVFAGPSGVGKSSILSALTGI-----------------------ELKVSQISEKTER 196
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278
G+HTT V L + ++ DTPGF+ L ++ E+K + +C F+
Sbjct: 197 GRHTTTGVRLYRFNENSFIGDTPGFSSVDALYFMEKR------EVKNYFREFLRYRCRFS 250
Query: 279 NCLHLGEPGCVV-----KGDW--ERYQYYFQLL 304
NC H EPGC+V KG+ ERY+ Y +++
Sbjct: 251 NCTHTDEPGCLVKEAVKKGEISKERYENYLKII 283
>gi|419780523|ref|ZP_14306370.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK100]
gi|383185121|gb|EIC77620.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK100]
Length = 292
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERENSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ T GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRTIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGAIATFRFDNYLQFLSEIENRRE 281
>gi|423342711|ref|ZP_17320425.1| ribosome small subunit-dependent GTPase A [Parabacteroides
johnsonii CL02T12C29]
gi|409216966|gb|EKN09945.1| ribosome small subunit-dependent GTPase A [Parabacteroides
johnsonii CL02T12C29]
Length = 310
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 122/253 (48%), Gaps = 40/253 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKS 130
ANVD +L+ +++ P + RFL AE+ +P+ L NK++ D E+L+ +
Sbjct: 85 AANVDQAMLIVTVNYPITTTVFIDRFLATAEAYRVPVKLVFNKIDRYNGGDRELLDGLVN 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY ++ GLD L + L+ + T++ G SGVGKS++IN L
Sbjct: 145 LYTTIGYPCSMLCARTEEGLDGLKEDLKGKITLLSGHSGVGKSTIINKL----------- 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
I G+ D R G++S +G HTT ++PL GGYL DTPG ++
Sbjct: 194 -------IPGA----DLRTGDISEYHNKGMHTTTFSEMIPLPDGGYLIDTPGIKGFGTIE 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ +A FPEI + A C FNNC H EPGC V E RY+ Y +
Sbjct: 243 MEGAEIAHYFPEIFKF-----SADCKFNNCSHRHEPGCAVLRAVEEHYISESRYKSYLSI 297
Query: 304 LD---EIRIREEF 313
LD E + REE+
Sbjct: 298 LDDKQESKYREEY 310
>gi|422853383|ref|ZP_16900047.1| GTP-binding protein [Streptococcus sanguinis SK160]
gi|325697395|gb|EGD39281.1| GTP-binding protein [Streptococcus sanguinis SK160]
Length = 292
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDFYVQAYQSIGYEVLKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|312127900|ref|YP_003992774.1| ribosome small subunit-dependent gtpase a [Caldicellulosiruptor
hydrothermalis 108]
gi|311777919|gb|ADQ07405.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
hydrothermalis 108]
Length = 290
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 39/295 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANVD +++ +
Sbjct: 27 CRARGVFRKDDITPLVGDNVVI--VEKSKGSYVIDKILPRKNQLIRPPIANVDIAIVVVA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P++ AL + LV + + +NK++L DE+ K + + + + S +
Sbjct: 85 SVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDEKTFEMIKQQYSVF--DVIGVSAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L ++ + +V G SGVGKSS++N L P A
Sbjct: 143 TGEGIDKLKDYIQGRISVFAGQSGVGKSSILNCL--IPGA-------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L +PE +
Sbjct: 181 NLKVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIMGLLRHELKYYYPEFYD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C F C H+ EP C+VK ++ERY+ Y Q+ ++ ++E+
Sbjct: 241 F------EGCRFPGCNHIFEPDCMVKAAVTERKINFERYERYKQIFMQLPAQKEY 289
>gi|312865632|ref|ZP_07725856.1| ribosome small subunit-dependent GTPase A [Streptococcus downei
F0415]
gi|311098753|gb|EFQ56973.1| ribosome small subunit-dependent GTPase A [Streptococcus downei
F0415]
Length = 290
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 123/276 (44%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD +G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSQGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K +L+ DE + GYE FC LD LL +L+ QTTV
Sbjct: 101 HKGIKPLVYISKTDLLEDENQIKAIGQHYQAIGYE--FC-----WSLDQLLPKLKGQTTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A +S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKIAPELELETKA----------------------ISNSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS + GG +ADTPGF+ L Q FPE +++ + C F +C H
Sbjct: 192 RAVSFYNVHGGK-IADTPGFSSIDYEVSDSAQLNQAFPEFRKLSQ-----NCKFRSCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E RY Y L EI R E
Sbjct: 246 HEPACAVKAALESNQIWASRYDDYLVFLSEIENRRE 281
>gi|421500621|ref|ZP_15947613.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402267175|gb|EJU16571.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 265
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 131/278 (47%), Gaps = 47/278 (16%)
Query: 46 VVGSIDWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
VVG DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ +
Sbjct: 12 VVG--DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHS 69
Query: 104 ESTGIPLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
I + +NK++L+ E L ++ + L F S + + G+++L Q +D+
Sbjct: 70 MYEKIRPCVIINKIDLLTETELEEFRKQFNFLQALSIPLFFISQKEQKGIEALKQFFQDK 129
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T I GPSGVGKSSLIN L+ + GE+S K RGK
Sbjct: 130 VTAIGGPSGVGKSSLINLLQEV----------------------KALETGEISKKLQRGK 167
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNN 279
HTTR LLPL GGY+ DTPGF+ L + + L FPE + C F +
Sbjct: 168 HTTRDSRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQ------RKESCKFGD 221
Query: 280 CLHLGEPGCVVKG-------DWERYQY----YFQLLDE 306
C H+ EP C V+ ERYQ+ Y+QL E
Sbjct: 222 CHHIHEPFCAVRKAVEEGEISKERYQFFTDIYYQLKTE 259
>gi|373114327|ref|ZP_09528540.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|371652321|gb|EHO17737.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
Length = 254
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 129/273 (47%), Gaps = 45/273 (16%)
Query: 51 DWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ + I
Sbjct: 4 DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHSMYEKI 63
Query: 109 PLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165
+ +NK++L+ E L ++ + L F S + + G+++L Q +D+ T I
Sbjct: 64 RPCVIINKIDLLTETELEEFRKQFDFLQALSIPLFFISQKEQKGIEALKQFFQDKVTAIG 123
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
GPSGVGKSSLIN L+ ++ GE+S K RGKHTTR
Sbjct: 124 GPSGVGKSSLINLLQEV----------------------KELETGEISKKLQRGKHTTRD 161
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284
LLPL GGY+ DTPGF+ L + + L FPE + C F +C H+
Sbjct: 162 SRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQ------RKESCKFGDCHHIH 215
Query: 285 EPGCVVKG-------DWERYQY----YFQLLDE 306
EP C V+ ERYQ+ Y+QL E
Sbjct: 216 EPFCAVRKAVEEGEISKERYQFFTDIYYQLKTE 248
>gi|451344178|ref|ZP_21913238.1| ribosome small subunit-dependent GTPase A [Eggerthia catenaformis
OT 569 = DSM 20559]
gi|449336892|gb|EMD16060.1| ribosome small subunit-dependent GTPase A [Eggerthia catenaformis
OT 569 = DSM 20559]
Length = 288
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 131/259 (50%), Gaps = 41/259 (15%)
Query: 54 DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLA 113
+ G I+ + R + PP+AN+D LL+FS+ P + L RFL ES I +
Sbjct: 51 NNEGYIQEIKPRKNMLERPPIANIDQALLVFSITHPDFDSLLLDRFLALVESRHIKPFII 110
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPL-FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGK 172
+ K++L + +++ K+ + PL F S + K+GL+ + L+D+ TVI G SGVGK
Sbjct: 111 ITKIDL-NYDLIEKIKTDYSPY---PLYFVSSKKKIGLEEVKALLKDKVTVITGQSGVGK 166
Query: 173 SSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232
SSL+NAL D+ E E+S GRGKHTTRH L+ +
Sbjct: 167 SSLLNAL----------DIQLNIE------------TNEISEALGRGKHTTRHTELIKMY 204
Query: 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292
GGY+ADTPGF+ L +T + L+ ++ + + + +C F CLH EP C VK
Sbjct: 205 -GGYVADTPGFSSLE-LDLTAKELSVSYHDFDDYSR-----ECKFRGCLHDSEPYCKVKE 257
Query: 293 DW-------ERYQYYFQLL 304
ERY++Y L
Sbjct: 258 AVENGKIARERYEHYLMFL 276
>gi|315038630|ref|YP_004032198.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL 1112]
gi|385817897|ref|YP_005854287.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL1118]
gi|312276763|gb|ADQ59403.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL 1112]
gi|327183835|gb|AEA32282.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL1118]
Length = 296
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 142/293 (48%), Gaps = 48/293 (16%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD+V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVKIMPRLNRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL+ + T+ L+K +L+D++ L+ K L + GY P+F
Sbjct: 85 AVEPDFSLELLDRFLIFFSWQKVKATIYLSKADLIDDDKLSEIKKSLAYYQEIGY-PVFT 143
Query: 143 SV-ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+ ++ + L+ +DQ + G SG GKS+L+N L+ H
Sbjct: 144 DYHDVQIKIPELIG--KDQIWTLAGQSGAGKSTLLNHLKEDAH----------------- 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q GE+ST RGKHTTR V L L G G+LADTPGF+ L + L F
Sbjct: 185 -----QATGEISTSLNRGKHTTRKVELFKL-GEGFLADTPGFSSIDLTPIKLNELCNYFV 238
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E K +A++ KC F C HL EPGC VK E RY+ Y + EI
Sbjct: 239 EFK---RASQ--KCKFRGCQHLKEPGCEVKKLLEEGKILASRYKDYLAMRTEI 286
>gi|332880824|ref|ZP_08448495.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|357046980|ref|ZP_09108594.1| ribosome small subunit-dependent GTPase A [Paraprevotella clara YIT
11840]
gi|332681207|gb|EGJ54133.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|355530075|gb|EHG99493.1| ribosome small subunit-dependent GTPase A [Paraprevotella clara YIT
11840]
Length = 310
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 116/253 (45%), Gaps = 40/253 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
ANVD L+ ++ P+ + RFL AE+ +P++L NK + D + L + +H
Sbjct: 85 AANVDQAFLIVTVSHPETSTTFIDRFLASAEAYRVPVSLVFNKTDCYDADDLRYMEGMMH 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY CS LG+D+L L+ +TT++ G SGVGKS+L+N L
Sbjct: 145 LYTTIGYPCHACSALQSLGIDALRDSLKGRTTLLSGHSGVGKSTLLNTLI---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L + R E+S G HTT + L GGGY+ DTPG
Sbjct: 195 ------PDL------NVRTAEISAAHDTGMHTTTFSEMFSLPGGGYVIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
K+ +A F EI + A C +NNC H EPGC V+ E RY Y +
Sbjct: 243 FEKEEMAHYFREIFRI-----SADCKYNNCTHTHEPGCAVRRAVEEHLISESRYASYLNM 297
Query: 304 LDEIRIREEFQLR 316
L++ R E + R
Sbjct: 298 LED---RHESKYR 307
>gi|422861573|ref|ZP_16908213.1| GTP-binding protein [Streptococcus sanguinis SK330]
gi|327468441|gb|EGF13926.1| GTP-binding protein [Streptococcus sanguinis SK330]
Length = 292
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLERKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|406576763|ref|ZP_11052388.1| GTPase RsgA [Streptococcus sp. GMD6S]
gi|419817062|ref|ZP_14341232.1| GTPase RsgA [Streptococcus sp. GMD4S]
gi|404460728|gb|EKA06972.1| GTPase RsgA [Streptococcus sp. GMD6S]
gi|404466448|gb|EKA11784.1| GTPase RsgA [Streptococcus sp. GMD4S]
Length = 292
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERENSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLQFLSEIENRRE 281
>gi|228477337|ref|ZP_04061975.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
SK126]
gi|228251356|gb|EEK10527.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
SK126]
Length = 290
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 139/309 (44%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQKIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IFS-------LEDLLPLLTDKITVFMGQTGVGKSTLLNRIAPQLHL-------------- 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 176 --------ETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPEI + C F +C H EP C VK + E RY Y Q L EI R E
Sbjct: 227 FPEISQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWQVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 TYKKTVKRK 290
>gi|149277456|ref|ZP_01883597.1| ribosome-associated GTPase [Pedobacter sp. BAL39]
gi|149231689|gb|EDM37067.1| ribosome-associated GTPase [Pedobacter sp. BAL39]
Length = 306
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 131/285 (45%), Gaps = 48/285 (16%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQ 88
+ VGD+V ++ +G+I + +R I+ + AN+D L+ ++
Sbjct: 42 IAVGDQVEF-ELEPNSDKGVISKLHERKNYIIRKSINLSKQAQIIAANMDQAFLVVTLAS 100
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVE 145
P+ + RFL AE+ GIP L NK++L +E+ VL+ +KS GY S
Sbjct: 101 PRTSLGFIDRFLATAEAYGIPAILIFNKLDLFNEDGLAVLDEYKSIYEHIGYPCYTVSAL 160
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + L+D+ T+ G SGVGKSSLINAL
Sbjct: 161 EGTNIPQIENLLKDKITLFSGHSGVGKSSLINALLPG----------------------R 198
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ GE+S S +G+HTT + L GGYL DTPG + + + + L F E+K
Sbjct: 199 SIKTGEISESSDKGQHTTTFAEMHTLPFGGYLIDTPGIRELGIFDIRPEELGHYFREMKA 258
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVV-----KGDWE--RYQYYFQL 303
ML +C FNNC H+ EPGC V GD E RY+ Y +
Sbjct: 259 MLN-----QCRFNNCRHVNEPGCAVIKAVENGDIELSRYESYLSI 298
>gi|418973406|ref|ZP_13521400.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383349295|gb|EID27240.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae ATCC BAA-960]
Length = 292
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ +K GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYKQTYGDIGYD----FVTSK---EELLPLLTDKITV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIASFRFDNYLQFLSEIENRRE 281
>gi|422866405|ref|ZP_16913030.1| GTP-binding protein [Streptococcus sanguinis SK1058]
gi|327488828|gb|EGF20627.1| GTP-binding protein [Streptococcus sanguinis SK1058]
Length = 312
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|375148867|ref|YP_005011308.1| ribosome biogenesis GTPase RsgA [Niastella koreensis GR20-10]
gi|361062913|gb|AEW01905.1| ribosome biogenesis GTPase RsgA [Niastella koreensis GR20-10]
Length = 310
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 148/333 (44%), Gaps = 54/333 (16%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRR 56
M+ IV +S S + +TG + ++ + K + VGD+VV+
Sbjct: 1 MKAIVYRSTGSWY-NVKTETGKAMSARIKGVFKIDDITSTNPIAVGDEVVIDIESESANT 59
Query: 57 GMIENVFQRSTEI--LDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
MI + R I P AN+D +L ++ PK + RFLV +E+
Sbjct: 60 AMITEICPRRNYINRQSPSHKKQHHIVAANIDQSVLFATLRDPKTSQGFIDRFLVTSEAY 119
Query: 107 GIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
+P + NK +L ++E K GY + SV++ G+D L L ++TT+
Sbjct: 120 HVPAIVVFNKADLYKNKEQEKYAMLKEMYAVIGYRTILMSVKTNEGVDELKSVLENKTTL 179
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+ G SGVGKSS IN++ DV W SG+G HTT
Sbjct: 180 MSGHSGVGKSSFINSIFPELKLK-TQDVSGW---------------------SGKGMHTT 217
Query: 224 RHVSL--LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281
+ LP+ GG + DTPG + L+ +++Q L+ +PE+ +L C FNNCL
Sbjct: 218 TFAEMFDLPVPTGGRVIDTPGMREFGLVDISRQELSHYYPEMARVLN-----DCQFNNCL 272
Query: 282 HLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
H+ EPGC VK ERY Y+ +L+ I
Sbjct: 273 HINEPGCAVKDGVVNGTIHEERYISYYNILESI 305
>gi|293572649|ref|ZP_06683617.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E980]
gi|430842690|ref|ZP_19460602.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1007]
gi|431083422|ref|ZP_19495993.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1604]
gi|431115943|ref|ZP_19497848.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1613]
gi|431600932|ref|ZP_19522417.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1861]
gi|431739267|ref|ZP_19528205.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1972]
gi|431742269|ref|ZP_19531163.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2039]
gi|291607235|gb|EFF36589.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E980]
gi|430492914|gb|ELA69255.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1007]
gi|430565243|gb|ELB04412.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1604]
gi|430568549|gb|ELB07592.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1613]
gi|430590089|gb|ELB28174.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1861]
gi|430596244|gb|ELB34087.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1972]
gi|430600271|gb|ELB37924.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2039]
Length = 299
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 139/294 (47%), Gaps = 47/294 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ + + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPLIFLTKTDLSDDPKKIEEIKQIYTKIGYPVI---VPNHAGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV LLP+ GG +ADTPGF+ L + L + FPE E A C F
Sbjct: 194 RGRHTTRHVELLPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SAHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C+H EPGC VK E RY Y Q L EI R+ TK+EG
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMY-----TKKEG 296
>gi|407682308|ref|YP_006797482.1| GTPase RsgA [Alteromonas macleodii str. 'English Channel 673']
gi|407243919|gb|AFT73105.1| GTPase RsgA [Alteromonas macleodii str. 'English Channel 673']
Length = 347
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 147/313 (46%), Gaps = 52/313 (16%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERTTVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------K 291
D+PG + L + + + F E ++ L C F +C HL +PGC++ K
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCLLREAVEEGK 318
Query: 292 GDWERYQYYFQLL 304
ER+ Y ++L
Sbjct: 319 ISAERFDSYHRIL 331
>gi|270292089|ref|ZP_06198304.1| probable GTPase EngC [Streptococcus sp. M143]
gi|270279617|gb|EFA25459.1| probable GTPase EngC [Streptococcus sp. M143]
Length = 292
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIATFRFDNYLQFLSEIENRRE 281
>gi|392988390|ref|YP_006486983.1| hypothetical protein EHR_05705 [Enterococcus hirae ATCC 9790]
gi|392335810|gb|AFM70092.1| hypothetical protein EHR_05705 [Enterococcus hirae ATCC 9790]
Length = 299
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 136/291 (46%), Gaps = 40/291 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + V R +++ PPVANVD +++ S+ +P L RF
Sbjct: 41 LVGDQVLFESENKTD--GYLLEVMPRKNQLVRPPVANVDLGVVVTSLVEPNFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E I + L K +L +E+ ++ K T GY + L++
Sbjct: 99 LVTLEYESIEPVIFLTKTDLASNEQQIDEIKQTYETIGYPVIVPKYPGDTA--ELIRYFP 156
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
++ TV +G SG GKS+L+N + SP + GE+S GR
Sbjct: 157 ERLTVFMGQSGAGKSTLLNQI--SPDL--------------------NLETGEISDSLGR 194
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278
G+HTTRHV LLPL G +ADTPGF+ L + L + FPE + C F
Sbjct: 195 GRHTTRHVELLPLY-DGLVADTPGFSSIDFLTIETTELPKQFPEF-----VSASNHCRFR 248
Query: 279 NCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY+ Y Q L E+ R+ + G ++
Sbjct: 249 ECMHAKEPGCEVKRQVETGEIAQTRYENYLQFLQEVENRKPIYSKKEGKRK 299
>gi|311745685|ref|ZP_07719470.1| ribosome small subunit-dependent GTPase A [Algoriphagus sp. PR1]
gi|126575124|gb|EAZ79474.1| ribosome small subunit-dependent GTPase A [Algoriphagus sp. PR1]
Length = 307
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 41/246 (16%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
+N+D +L+ +M P+ + RFLV ES IP L +NK +L+D W +H
Sbjct: 85 ASNLDQAILVITMKNPRTSMGFIDRFLVSTESFRIPAILVVNKTDLLDGPKAEEWLQDIH 144
Query: 134 TWGYEPLFCSV--ESKLGLDSLLQR----LRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
YEPL V S L D L ++ L+D++T+I G SGVGKS+L+N L D
Sbjct: 145 EI-YEPLGYQVLEVSALQEDDLHEKFQTLLQDKSTLIAGHSGVGKSTLLNKL-----VPD 198
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
A +Q E+S+ S +G HTT L LS GG L DTPG +
Sbjct: 199 A-----------------EQSTKEISSFSDKGVHTTTFAELFSLSYGGDLIDTPGIKEFG 241
Query: 248 LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYY 300
+L V L+ FPE++ L +C +NNC HL EPGCVV+ E RY Y
Sbjct: 242 ILDVEDVELSHYFPEMRNYL-----GQCKYNNCQHLHEPGCVVREKVEAGYIHPYRYHSY 296
Query: 301 FQLLDE 306
+L+E
Sbjct: 297 LNILNE 302
>gi|421145724|ref|ZP_15605569.1| GTPase [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|395487879|gb|EJG08789.1| GTPase [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 297
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIINKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+TTVI GPSGVGKSS IN L+S E IL
Sbjct: 143 LISCHQNIGLEEVENFLKDKTTVIGGPSGVGKSSFINFLQS--------------ERIL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSSI------ESCKFLNCSHTHEPGCNVKREVEEKKISKDRYDFYKKTLE 287
>gi|325954938|ref|YP_004238598.1| ribosome biogenesis GTPase RsgA [Weeksella virosa DSM 16922]
gi|323437556|gb|ADX68020.1| ribosome biogenesis GTPase RsgA [Weeksella virosa DSM 16922]
Length = 305
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 47/273 (17%)
Query: 54 DRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
D +I ++ +R I+ V +N+D L+ ++ PK + RFLV A
Sbjct: 55 DEIAVITHIHERKNYIIRKSVNLSKKTHIIASNIDLAFLMITLSNPKTSLGFIDRFLVTA 114
Query: 104 ESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
E+ IP+ L NK++ EE L +KS GYE S E+++GL+ + R++D
Sbjct: 115 EAYHIPVILLFNKIDAYTEEDLQELERYKSIYQPIGYESFSISAETEVGLEEVKNRMKDS 174
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
+++ G SGVGKS+L+N L +P L D + +VS + +G+
Sbjct: 175 VSMVSGHSGVGKSTLLNTL----------------DPTL------DLKTHQVSDFNSKGQ 212
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTT + P GG++ DTPG + L+ KQ L FPE + C F+NC
Sbjct: 213 HTTTFAQMYPWPFGGFIIDTPGIKEFGLVHFEKQELQNYFPEFYKFRD-----DCKFDNC 267
Query: 281 LHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+H+ EP C V+ E RY+ Y L +
Sbjct: 268 IHVNEPKCGVREAVEKGEIAKSRYENYLTFLQD 300
>gi|390566044|ref|ZP_10246572.1| putative ribosome biogenesis GTPase rsgA [Nitrolancetus hollandicus
Lb]
gi|390170707|emb|CCF85915.1| putative ribosome biogenesis GTPase rsgA [Nitrolancetus hollandicus
Lb]
Length = 307
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 142/307 (46%), Gaps = 46/307 (14%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRR---VLVGDKVVV-------GSIDWVDRRGMIENVFQ 64
D G+ LLC VR +K+ +R+ V VGD+V V G I+ V R + +
Sbjct: 21 DVRTPAGI-LLCTVRGSIKRERRKTTPVAVGDRVAVTVTGPGEGVIESVAPRRRVLSRLA 79
Query: 65 RSTEILDPPV-ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R TE ++ + AN D ++ +F++ +P+ L RFL+ AE+ + + +NK++L
Sbjct: 80 RGTEDVEQVILANPDQMVAVFAVAEPEPHLRMLDRFLIIAEARNLAAAICVNKIDLDRSG 139
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
L + GY + S + G+D+L + L + + GPSGVGKSSL+N L
Sbjct: 140 ELRRIFAPYRAAGYPVIETSAVTGEGIDTLRELLAGKISAFAGPSGVGKSSLLNVLHPGF 199
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
A R+GE+S +G+G+HTT +L+ L Y+ADTPG
Sbjct: 200 KA----------------------RIGEISAATGKGRHTTTGSTLISLGDETYVADTPGI 237
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ER 296
Q + L FPE + L C + +C HLGE GC V ER
Sbjct: 238 RQLGFWGIDFDRLDTYFPEFRPYL-----GSCRYLDCTHLGEAGCAVLAAVEAGAIARER 292
Query: 297 YQYYFQL 303
Y+ Y L
Sbjct: 293 YESYRAL 299
>gi|340399676|ref|YP_004728701.1| putative GTPase engC [Streptococcus salivarius CCHSS3]
gi|338743669|emb|CCB94179.1| putative GTPase engC [Streptococcus salivarius CCHSS3]
Length = 290
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 141/309 (45%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S+ +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSVKEPDFNCNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IF-------SLEELLPLLADKITVFMGQTGVGKSTLLNRIAPQLHLE------------- 176
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 177 ---------TGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + E RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKEEVENGQIWQVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 TYKKTVKRK 290
>gi|406586584|ref|ZP_11061512.1| GTPase RsgA [Streptococcus sp. GMD1S]
gi|404473935|gb|EKA18258.1| GTPase RsgA [Streptococcus sp. GMD1S]
Length = 292
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ T GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYRTIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLQFLSEIENRRE 281
>gi|422847619|ref|ZP_16894302.1| GTP-binding protein [Streptococcus sanguinis SK72]
gi|325686617|gb|EGD28643.1| GTP-binding protein [Streptococcus sanguinis SK72]
Length = 292
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLERKRIHPIIYISKLDLLGDEQSLDVYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|387760520|ref|YP_006067497.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
57.I]
gi|339291287|gb|AEJ52634.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
57.I]
Length = 290
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 141/309 (45%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S+ +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSVKEPDFNCNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IF-------SLEELLPLLTDKITVFMGQTGVGKSTLLNRIAPQLHLE------------- 176
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 177 ---------TGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + E RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKEEVENGQIWQVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 TYKKTVKRK 290
>gi|417301634|ref|ZP_12088781.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
WH47]
gi|327542052|gb|EGF28549.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
WH47]
Length = 386
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 147/313 (46%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 101 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 160
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 161 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 217
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 218 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV- 276
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +G HTT L+PL+ GG + DT
Sbjct: 277 ---------------QPGLGLA------IGAVSSDNDKGTHTTTASQLIPLADGGAVFDT 315
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + C + +CLHL E C VK D
Sbjct: 316 PGIRQFQLWGISASEVAGLMPDLRPYVSG-----CRYPDCLHLAEDDCAVKNAVADARID 370
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 371 ARRYDAYCHLLEE 383
>gi|335029679|ref|ZP_08523186.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1076]
gi|334268976|gb|EGL87408.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1076]
Length = 292
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVHISKMDLLEDRRELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ + Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIATFRFDNFLQFLSEIENRRE 281
>gi|401682633|ref|ZP_10814524.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. AS14]
gi|400184284|gb|EJO18529.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. AS14]
Length = 292
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEKSLDVYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVEAGQIASFRFDNYLQFLSEIENRRE 281
>gi|416050980|ref|ZP_11577186.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993504|gb|EGY34859.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 346
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 147/314 (46%), Gaps = 52/314 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGGIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIVSSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQAVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + RVGE+S+ SG G+HTT L LS GG L
Sbjct: 225 AVL--PHV--------------------EARVGEISSTSGLGQHTTTSSRLYHLSQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F +C HL +PGC ++ E
Sbjct: 263 IDSPGIREFGLWHLEDEQITKGYREFQTVL-----GTCKFRDCKHLNDPGCALRQAVEEG 317
Query: 296 -----RYQYYFQLL 304
RY+ Y +LL
Sbjct: 318 KISAVRYENYHRLL 331
>gi|227872154|ref|ZP_03990524.1| ribosome-associated GTP-binding protein [Oribacterium sinus F0268]
gi|227842012|gb|EEJ52272.1| ribosome-associated GTP-binding protein [Oribacterium sinus F0268]
Length = 299
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 144/307 (46%), Gaps = 46/307 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPV 74
+ K+GV C + L + K + LVGD V V + ++ G I + R E++ P V
Sbjct: 16 DTKSGV-FECHAKGLFRNKKEKPLVGDMVEVEEVPDTEKEMVGQILRILPRKNELIRPLV 74
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSR 131
+N+D L+F++ +P+ + RFL+ E+ IP L NK +L+ E + +S
Sbjct: 75 SNIDQAALVFAVKEPEPSFPLIDRFLLHLEAREIPCMLFFNKRDLLSECEADYREKMQSI 134
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
G F +K + +L+ L+ +TTV GPSGVGKSS+IN L
Sbjct: 135 YEKAGIPVYFFQSNTKEDREEILKLLKGKTTVFSGPSGVGKSSMINLL------------ 182
Query: 192 DNWFEPILGSKWFEDQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
ED+R+ G +S K RGK+TTRH L Y+ DTPGF
Sbjct: 183 ------------LEDRRMETGSLSEKIKRGKNTTRHAEFFSLGEDSYVLDTPGFTSLFPP 230
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG-------CVVKGDW--ERYQYY 300
++ ++L +PE +E ++ C +N C HLGE V KG+ ERY+ Y
Sbjct: 231 DISPENLRYFYPEFEEYRQS-----CRYNTCYHLGEKKQDCGVKQAVEKGEIAPERYESY 285
Query: 301 FQLLDEI 307
L EI
Sbjct: 286 KSLYQEI 292
>gi|227824647|ref|ZP_03989479.1| ribosome small subunit-dependent GTPase A [Acidaminococcus sp. D21]
gi|352683755|ref|YP_004895739.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
intestini RyC-MR95]
gi|226905146|gb|EEH91064.1| ribosome small subunit-dependent GTPase A [Acidaminococcus sp. D21]
gi|350278409|gb|AEQ21599.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
intestini RyC-MR95]
Length = 295
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 129/294 (43%), Gaps = 32/294 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV VR LKK + + GD V +++ GMIE + R + P VAN+D L
Sbjct: 23 GVTYTAKVRGRLKKARFLLAAGDWV---TLETRGEEGMIETILPRRNLLQRPLVANLDWL 79
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+F+ P + + L AE+ IP L +NK +L E L ++ GY
Sbjct: 80 FAVFAAKDPAPSFLLIDKLLALAEAYDIPAALVINKCDLAAEGFLEQIRAIYEPLGYPVY 139
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F GLD + ++ T+ GPSG GKS+L+N L +P L
Sbjct: 140 FVEARKGKGLDPIRAKMTGLTSAFGGPSGAGKSTLLNHL----------------DPSL- 182
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR LLP + GG++ DTPGF L ++ S+ F
Sbjct: 183 -----TLETGAVSEKIGRGRHTTRFAQLLPFA-GGFIVDTPGFGNIDLRELELPSVEAGF 236
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD-EIRIREEF 313
E+ A +C F C H EP C VK + + D I IR+E
Sbjct: 237 REL-----APYAGQCRFTGCTHTHEPDCAVKAALQEGKIAQSRYDSSIMIRQEL 285
>gi|227552683|ref|ZP_03982732.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|257897393|ref|ZP_05677046.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293378847|ref|ZP_06625002.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
PC4.1]
gi|431758713|ref|ZP_19547338.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3083]
gi|227178188|gb|EEI59160.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|257833958|gb|EEV60379.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|292642388|gb|EFF60543.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
PC4.1]
gi|430617081|gb|ELB53967.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3083]
Length = 299
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 141/298 (47%), Gaps = 55/298 (18%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLFCSVESKLG-LDSL 153
LV E I + L K +L+D EE+ T+ GY + V + G L
Sbjct: 99 LVTLEYESIEPLIFLTKTDLLDDPKKIEEIKQTYTK----IGYPVI---VPNHAGDTTEL 151
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
++ ++ +V +G SG GKS+L+N + SP + A GE+S
Sbjct: 152 IRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEIS 189
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV LLP+ G +ADTPGF+ L + L + FPE E A
Sbjct: 190 DALGRGRHTTRHVELLPIY-DGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SA 243
Query: 274 KCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C F C+H EPGC VK GD RY Y Q L EI R + TK+EG
Sbjct: 244 HCKFRECMHAKEPGCEVKQRVETGDIAQTRYDNYLQFLQEIEKR-----KPMYTKKEG 296
>gi|436837566|ref|YP_007322782.1| ribosome small subunit-dependent GTPase A [Fibrella aestuarina BUZ
2]
gi|384068979|emb|CCH02189.1| ribosome small subunit-dependent GTPase A [Fibrella aestuarina BUZ
2]
Length = 308
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 47/292 (16%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLL 83
K+ + VGD+V D ++ +I ++ R I+ V AN+D +LL
Sbjct: 38 KVTNPIAVGDRVQFEVEDELENTAVIFDIAPRDNYIIRQSVHKTAHGHILAANLDQAVLL 97
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL 140
++ P+ + RFLV AE+ IP T+ NK +++++E L + + GY L
Sbjct: 98 ATLTLPRTSLGFIDRFLVTAEAFRIPTTVVFNKTDILNDEGLEYQREIQDMYEQIGYPTL 157
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S G+++ L + T++ G SGVGKSSL+NA+ A D+D
Sbjct: 158 ATSATEGDGVEAFRDLLDGKITLLSGHSGVGKSSLVNAI--------APDLD-------- 201
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
R EVST + +G HTT + L+ G ++ DTPG + L+ K +A F
Sbjct: 202 ------LRTNEVSTFANKGVHTTTFAEMFELAPGTFIIDTPGIKELGLIDTGKAEIAHYF 255
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GDW--ERYQYYFQLLD 305
PE+++ L +C F+NCLH+ EPGC +K GD RY Y +++
Sbjct: 256 PEMRDRLN-----QCRFHNCLHINEPGCAIKDAVAEGDIAESRYVSYLSMME 302
>gi|418069026|ref|ZP_12706306.1| GTPase [Pediococcus acidilactici MA18/5M]
gi|357537759|gb|EHJ21782.1| GTPase [Pediococcus acidilactici MA18/5M]
Length = 309
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 41/280 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + D+ G I ++ R E++ PP+AN+D +++ + QP L R
Sbjct: 40 LVGD--VVDFKENSDQTGYITSIHPRKNELVRPPLANIDQAVVVTAATQPDFSANLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLF-CSVESKLGLDSLLQ 155
LV I + +K +L+D E K + GY+ +F + G+ +L +
Sbjct: 98 LVALAEKKISAVIYFSKTDLLDNEAYQDLKQIADYYQKIGYQVVFPVRQKDDAGVKALRK 157
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ T+ +G +G GKS+L+N + +P L + + GEVS
Sbjct: 158 LFAERLTIFMGQTGAGKSTLLNRI----------------DPDL------NIQTGEVSQA 195
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTR VSL+ + GG +ADTPGF+ ++ ++ L + F EIK++ + C
Sbjct: 196 LNRGKHTTRKVSLMNID-GGLVADTPGFSSYAVFEMADTELKECFLEIKQIGQ-----NC 249
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
F CLHL EPGC VK E RY Y Q + IR
Sbjct: 250 RFRECLHLNEPGCAVKAAVENGEILASRYANYEQFMGLIR 289
>gi|257417244|ref|ZP_05594238.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257420435|ref|ZP_05597425.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|422708014|ref|ZP_16765548.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0043]
gi|257159072|gb|EEU89032.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257162259|gb|EEU92219.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315154704|gb|EFT98720.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0043]
Length = 297
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 132/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK + RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVKAGTIATSRYENYLQFLMEIENR 289
>gi|397906027|ref|ZP_10506854.1| Ribosome small subunit-stimulated GTPase EngC [Caloramator
australicus RC3]
gi|397160941|emb|CCJ34189.1| Ribosome small subunit-stimulated GTPase EngC [Caloramator
australicus RC3]
Length = 293
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 137/289 (47%), Gaps = 36/289 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD+V + I+ + +G+I+ + +R ++++ PPVANVD ++++F+
Sbjct: 26 CKARGKFRKDNITPLVGDRVYIEKIN--NSQGLIKEIKERKSQLIRPPVANVDQVVVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L R LV E + + LNK +L ++ S GY+ + +
Sbjct: 84 LKDPDISFTLLDRLLVHVEEKDLDCLICLNKSDLDEDGKFEKVYSIYTEAGYKVIKTNAL 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD L L+ + T GPSGVGKSSL N+L+
Sbjct: 144 KKEGLDELKAFLKGKITAFAGPSGVGKSSLFNSLQDKVKME------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
G +S K GRGKHTTRH L+ + YL DTPGF+ L + L F E +
Sbjct: 185 ---TGVISEKIGRGKHTTRHAQLIRIDDETYLVDTPGFSTLDLSFIEPNDLQYYFKEFRN 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ +C F++CLH+ E C + + E RY Y L+EI
Sbjct: 242 FI-----GQCKFSSCLHVKEKDCAIIENVEEGNICRIRYNNYLDFLNEI 285
>gi|419841135|ref|ZP_14364512.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|386905887|gb|EIJ70638.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 265
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 131/278 (47%), Gaps = 47/278 (16%)
Query: 46 VVGSIDWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
VVG DWV+ I V+ R + P VAN+D+L + F+ P L+ + L ++ +
Sbjct: 12 VVG--DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLILHS 69
Query: 104 ESTGIPLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
I + +NK++L+ E L ++ + L F S + + G+++L Q +D+
Sbjct: 70 MYEKIRPCVIINKIDLLTETELEEFRKQFDFLQALSIPLFFISQKEQKGIEALKQFFQDK 129
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T I GPSGVGKSSLIN L+ + GE+S K RGK
Sbjct: 130 VTAIGGPSGVGKSSLINLLQEV----------------------KALETGEISKKLQRGK 167
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNN 279
HTTR LLPL GGY+ DTPGF+ L + + L FPE + C F +
Sbjct: 168 HTTRDSRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQ------RKESCKFGD 221
Query: 280 CLHLGEPGCVVKG-------DWERYQY----YFQLLDE 306
C H+ EP C V+ ERYQ+ Y+QL E
Sbjct: 222 CHHIHEPFCAVRKAVEEGEISKERYQFFTDIYYQLKTE 259
>gi|69245431|ref|ZP_00603426.1| Protein of unknown function DUF258 [Enterococcus faecium DO]
gi|257879842|ref|ZP_05659495.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257882568|ref|ZP_05662221.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886034|ref|ZP_05665687.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257891683|ref|ZP_05671336.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894158|ref|ZP_05673811.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260559515|ref|ZP_05831696.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206666|ref|ZP_05921364.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565027|ref|ZP_06445481.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
D344SRF]
gi|293563689|ref|ZP_06678130.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1162]
gi|293570101|ref|ZP_06681181.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1071]
gi|294614913|ref|ZP_06694804.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1636]
gi|294618615|ref|ZP_06698154.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1679]
gi|294623691|ref|ZP_06702524.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
U0317]
gi|314938227|ref|ZP_07845527.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a04]
gi|314943124|ref|ZP_07849922.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133C]
gi|314949321|ref|ZP_07852663.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0082]
gi|314952255|ref|ZP_07855269.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133A]
gi|314992111|ref|ZP_07857561.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133B]
gi|314996293|ref|ZP_07861349.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a01]
gi|383329931|ref|YP_005355815.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus faecium
Aus0004]
gi|389869747|ref|YP_006377170.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium DO]
gi|406579476|ref|ZP_11054707.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD4E]
gi|406581815|ref|ZP_11056950.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD3E]
gi|406584223|ref|ZP_11059258.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD2E]
gi|406589677|ref|ZP_11064105.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD1E]
gi|410937643|ref|ZP_11369502.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. GMD5E]
gi|415892940|ref|ZP_11550039.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4453]
gi|416138834|ref|ZP_11599111.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4452]
gi|424790094|ref|ZP_18216687.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
V689]
gi|424797360|ref|ZP_18222958.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
S447]
gi|424849930|ref|ZP_18274357.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R501]
gi|424859985|ref|ZP_18283960.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R499]
gi|424898955|ref|ZP_18322502.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R497]
gi|424952103|ref|ZP_18367141.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R496]
gi|424953486|ref|ZP_18368444.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R494]
gi|424957017|ref|ZP_18371769.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R446]
gi|424960827|ref|ZP_18375308.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1986]
gi|424965092|ref|ZP_18379119.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1190]
gi|424967578|ref|ZP_18381271.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1140]
gi|424970943|ref|ZP_18384417.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1139]
gi|424974726|ref|ZP_18387943.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1137]
gi|424977462|ref|ZP_18390473.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1123]
gi|424979755|ref|ZP_18392589.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV99]
gi|424985888|ref|ZP_18398345.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV69]
gi|424986856|ref|ZP_18399258.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV38]
gi|424992533|ref|ZP_18404590.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV26]
gi|424995166|ref|ZP_18407063.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV168]
gi|424999157|ref|ZP_18410797.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV165]
gi|425001030|ref|ZP_18412566.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV161]
gi|425004973|ref|ZP_18416256.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV102]
gi|425008272|ref|ZP_18419365.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV1]
gi|425011292|ref|ZP_18422201.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E422]
gi|425013386|ref|ZP_18424118.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E417]
gi|425017688|ref|ZP_18428184.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C621]
gi|425020444|ref|ZP_18430749.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C497]
gi|425030248|ref|ZP_18435442.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C1904]
gi|425033030|ref|ZP_18438033.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
515]
gi|425036358|ref|ZP_18441121.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
514]
gi|425039083|ref|ZP_18443648.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
513]
gi|425041971|ref|ZP_18446343.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
511]
gi|425048044|ref|ZP_18451969.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
509]
gi|425053660|ref|ZP_18457190.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
506]
gi|425061729|ref|ZP_18464937.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
503]
gi|427397662|ref|ZP_18890144.1| ribosome small subunit-dependent GTPase A [Enterococcus durans
FB129-CNAB-4]
gi|430821477|ref|ZP_19440085.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0045]
gi|430827182|ref|ZP_19445346.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0164]
gi|430829996|ref|ZP_19448065.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0269]
gi|430832557|ref|ZP_19450600.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0333]
gi|430837172|ref|ZP_19455147.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0680]
gi|430839958|ref|ZP_19457894.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0688]
gi|430845352|ref|ZP_19463246.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1050]
gi|430847145|ref|ZP_19464992.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1133]
gi|430851322|ref|ZP_19469072.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1185]
gi|430854015|ref|ZP_19471737.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1258]
gi|430856278|ref|ZP_19473977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1392]
gi|430859196|ref|ZP_19476811.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1552]
gi|430861038|ref|ZP_19478630.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1573]
gi|430906581|ref|ZP_19485016.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1575]
gi|430964171|ref|ZP_19487619.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1576]
gi|431014800|ref|ZP_19490342.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1578]
gi|431216456|ref|ZP_19501207.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1620]
gi|431239336|ref|ZP_19503639.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1622]
gi|431265358|ref|ZP_19506060.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1623]
gi|431312205|ref|ZP_19508855.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1626]
gi|431387251|ref|ZP_19511614.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1627]
gi|431449114|ref|ZP_19513955.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1630]
gi|431512491|ref|ZP_19515918.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1634]
gi|431560987|ref|ZP_19519619.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1731]
gi|431668784|ref|ZP_19524146.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1904]
gi|431747442|ref|ZP_19536236.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2134]
gi|431749941|ref|ZP_19538671.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2297]
gi|431756193|ref|ZP_19544831.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2883]
gi|431761105|ref|ZP_19549692.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3346]
gi|431766089|ref|ZP_19554585.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4215]
gi|431768621|ref|ZP_19557056.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1321]
gi|431771741|ref|ZP_19560118.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1644]
gi|431774672|ref|ZP_19562977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2369]
gi|431777742|ref|ZP_19565993.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2560]
gi|431780438|ref|ZP_19568617.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4389]
gi|431783160|ref|ZP_19571282.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6012]
gi|431784116|ref|ZP_19572161.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6045]
gi|68195813|gb|EAN10249.1| Protein of unknown function DUF258 [Enterococcus faecium DO]
gi|257814070|gb|EEV42828.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818226|gb|EEV45554.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257821890|gb|EEV49020.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257828043|gb|EEV54669.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830537|gb|EEV57144.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260074614|gb|EEW62935.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079159|gb|EEW66852.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289163234|gb|EFD11080.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
D344SRF]
gi|291587473|gb|EFF19357.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1071]
gi|291592199|gb|EFF23817.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1636]
gi|291595134|gb|EFF26472.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1679]
gi|291596906|gb|EFF28124.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
U0317]
gi|291604373|gb|EFF33866.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1162]
gi|313589537|gb|EFR68382.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a01]
gi|313593325|gb|EFR72170.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133B]
gi|313595597|gb|EFR74442.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133A]
gi|313598132|gb|EFR76977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133C]
gi|313642423|gb|EFS07003.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a04]
gi|313644270|gb|EFS08850.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0082]
gi|364090931|gb|EHM33458.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4452]
gi|364092978|gb|EHM35293.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4453]
gi|378939625|gb|AFC64697.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus faecium
Aus0004]
gi|388534996|gb|AFK60188.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium DO]
gi|402916515|gb|EJX37381.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R501]
gi|402921207|gb|EJX41666.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
S447]
gi|402921238|gb|EJX41696.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
V689]
gi|402926063|gb|EJX46131.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R499]
gi|402927710|gb|EJX47645.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R496]
gi|402931979|gb|EJX51525.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R497]
gi|402938878|gb|EJX57844.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R494]
gi|402944649|gb|EJX63047.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R446]
gi|402944972|gb|EJX63351.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1190]
gi|402945764|gb|EJX64095.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1986]
gi|402954068|gb|EJX71723.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1140]
gi|402955683|gb|EJX73194.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1137]
gi|402960436|gb|EJX77580.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1139]
gi|402964971|gb|EJX81719.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV69]
gi|402965793|gb|EJX82481.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1123]
gi|402968197|gb|EJX84691.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV99]
gi|402973078|gb|EJX89227.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV26]
gi|402975685|gb|EJX91625.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV38]
gi|402978065|gb|EJX93830.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV168]
gi|402980115|gb|EJX95744.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV165]
gi|402987642|gb|EJY02689.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV161]
gi|402988014|gb|EJY03043.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV102]
gi|402993011|gb|EJY07662.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV1]
gi|402997457|gb|EJY11778.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E422]
gi|403001087|gb|EJY15162.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E417]
gi|403003827|gb|EJY17682.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C1904]
gi|403003896|gb|EJY17745.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C621]
gi|403009250|gb|EJY22709.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C497]
gi|403011437|gb|EJY24747.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
515]
gi|403014993|gb|EJY27941.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
514]
gi|403017440|gb|EJY30187.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
513]
gi|403024993|gb|EJY37105.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
511]
gi|403029320|gb|EJY41081.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
506]
gi|403031770|gb|EJY43360.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
509]
gi|403040655|gb|EJY51717.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
503]
gi|404455512|gb|EKA02359.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD4E]
gi|404459003|gb|EKA05376.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD3E]
gi|404464413|gb|EKA09954.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD2E]
gi|404470471|gb|EKA15103.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD1E]
gi|410733776|gb|EKQ75698.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. GMD5E]
gi|425721973|gb|EKU84873.1| ribosome small subunit-dependent GTPase A [Enterococcus durans
FB129-CNAB-4]
gi|430438430|gb|ELA48861.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0045]
gi|430444362|gb|ELA54217.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0164]
gi|430479314|gb|ELA56570.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0269]
gi|430479843|gb|ELA57053.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0333]
gi|430487602|gb|ELA64322.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0680]
gi|430490198|gb|ELA66740.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0688]
gi|430495757|gb|ELA71893.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1050]
gi|430534284|gb|ELA74745.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1185]
gi|430537818|gb|ELA78133.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1133]
gi|430539692|gb|ELA79932.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1258]
gi|430544038|gb|ELA84083.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1552]
gi|430545111|gb|ELA85105.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1392]
gi|430550627|gb|ELA90410.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1573]
gi|430554539|gb|ELA94141.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1575]
gi|430555232|gb|ELA94776.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1576]
gi|430559624|gb|ELA98972.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1578]
gi|430569821|gb|ELB08801.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1620]
gi|430571943|gb|ELB10815.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1622]
gi|430576193|gb|ELB14862.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1623]
gi|430579154|gb|ELB17690.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1626]
gi|430580808|gb|ELB19274.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1627]
gi|430585506|gb|ELB23791.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1630]
gi|430586410|gb|ELB24667.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1634]
gi|430589828|gb|ELB27928.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1731]
gi|430599950|gb|ELB37632.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1904]
gi|430606269|gb|ELB43627.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2134]
gi|430610892|gb|ELB48022.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2297]
gi|430615648|gb|ELB52592.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2883]
gi|430622479|gb|ELB59200.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3346]
gi|430627159|gb|ELB63676.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4215]
gi|430629040|gb|ELB65462.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1321]
gi|430632731|gb|ELB68932.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1644]
gi|430633557|gb|ELB69712.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2369]
gi|430639035|gb|ELB74926.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2560]
gi|430639850|gb|ELB75705.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4389]
gi|430645833|gb|ELB81335.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6012]
gi|430650157|gb|ELB85511.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6045]
Length = 299
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|407686228|ref|YP_006801401.1| GTPase RsgA [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407289608|gb|AFT93920.1| GTPase RsgA [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 347
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 147/313 (46%), Gaps = 52/313 (16%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERATVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------K 291
D+PG + L + + + F E ++ L C F +C HL +PGC++ K
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCLLREAVEEGK 318
Query: 292 GDWERYQYYFQLL 304
ER+ Y ++L
Sbjct: 319 ISAERFDSYHRIL 331
>gi|422740061|ref|ZP_16795218.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2141]
gi|315144150|gb|EFT88166.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2141]
Length = 297
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 132/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EP C VK E RY+ Y Q L EI+ R
Sbjct: 248 KFRECMHHKEPDCEVKRQVEAGTIATSRYENYLQFLMEIKNR 289
>gi|307707667|ref|ZP_07644147.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis NCTC
12261]
gi|307616279|gb|EFN95472.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis NCTC
12261]
Length = 292
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK ++LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELDFYEQTYGNIGYD----FVTSK---EALLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIAPFRFDNYLQFLSEIENRRE 281
>gi|325957111|ref|YP_004292523.1| Ribosome biogenesis GTPase rsgA [Lactobacillus acidophilus 30SC]
gi|325333676|gb|ADZ07584.1| Ribosome biogenesis GTPase rsgA [Lactobacillus acidophilus 30SC]
Length = 296
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 141/293 (48%), Gaps = 48/293 (16%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD+V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVKIMPRLNRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL + T+ L+K +L+D++ L+ K L + GY P+F
Sbjct: 85 AVEPDFSLELLDRFLTFFSWQKVKATIYLSKADLIDDDKLSEIKKSLAYYQEIGY-PVFT 143
Query: 143 SV-ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+ ++ + L+ +DQ + G SG GKS+L+N L+ H
Sbjct: 144 DYHDVQIKIPELIG--KDQIWTLAGQSGAGKSTLLNHLKEDAH----------------- 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q GE+ST RGKHTTR V L L G G+LADTPGF+ L + L F
Sbjct: 185 -----QATGEISTSLNRGKHTTRKVELFKL-GEGFLADTPGFSSIDLTPIKLNELCNYFV 238
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
E K +A++ KC F C HL EPGC VK E RY+ Y + EI
Sbjct: 239 EFK---RASQ--KCKFRGCQHLKEPGCEVKKLLEEGKILASRYEDYLAMRTEI 286
>gi|38257395|sp|Q7UUZ6.2|RSGA_RHOBA RecName: Full=Putative ribosome biogenesis GTPase RsgA
Length = 313
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 57/313 (18%)
Query: 21 GVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMIE 60
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 28 GVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMIS 87
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L+
Sbjct: 88 RTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDLI 144
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 145 DLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV- 203
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+P LG +G VS+ + +GKHTT L+PL+ GG + DT
Sbjct: 204 ---------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFDT 242
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG Q L ++ +A P+++ + C + +CLHL E C VK D
Sbjct: 243 PGIRQFQLWDISAGEVAGLMPDLRPYVSG-----CRYPDCLHLAEDDCAVKTAVADARID 297
Query: 294 WERYQYYFQLLDE 306
RY Y LL+E
Sbjct: 298 ARRYDAYCHLLEE 310
>gi|444376995|ref|ZP_21176232.1| Ribosome small subunit-stimulated GTPase EngC [Enterovibrio sp.
AK16]
gi|443678880|gb|ELT85543.1| Ribosome small subunit-stimulated GTPase EngC [Enterovibrio sp.
AK16]
Length = 350
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 154/317 (48%), Gaps = 57/317 (17%)
Query: 14 SDCND-KTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTE 68
+D D +TG+ C +R ++ + + GDKVV V ++ + G++E +R +
Sbjct: 53 ADIEDTQTGIIHRCNLRRSIESL----VTGDKVVWRPGVETLQGI--AGVVEAAHERHSV 106
Query: 69 I--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ + P AN+D ++++ ++ P+L + R+L+ E G + +NK++L+
Sbjct: 107 LTRPDYYDGVKPVAANIDQVVIVSAI-LPELSTNIIDRYLIATEQVGFKPLIVINKIDLL 165
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
D E L K+ L + GYE L S +S G+D L RL D T++ VG SGVGKSSL+N
Sbjct: 166 DAEGLEMVKNILSLYAEIGYEVLMVSQKSGEGVDELKARLADGTSIFVGQSGVGKSSLVN 225
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
AL +A +GEVS SG G+HTT L GG L
Sbjct: 226 ALLPEVNAD----------------------IGEVSENSGLGQHTTTTARLYHFPDGGDL 263
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV------- 290
D+PG + L + + + Q F E +E L C F +C H +PGC++
Sbjct: 264 IDSPGVREFGLWHLEPEQVTQGFKEFREFL-----GGCKFRDCKHKDDPGCLLREAVEDG 318
Query: 291 KGDWERYQYYFQLLDEI 307
K ER++ Y +++D +
Sbjct: 319 KISVERFESYHKIIDSM 335
>gi|375089342|ref|ZP_09735669.1| ribosome small subunit-dependent GTPase A [Facklamia languida CCUG
37842]
gi|374567118|gb|EHR38349.1| ribosome small subunit-dependent GTPase A [Facklamia languida CCUG
37842]
Length = 307
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 45/299 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSI-DWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + +K + LVGD V+ I D + G + + R +L PPVANVD +++ S+
Sbjct: 35 RGNFRHLKMKPLVGDYVIFEPIADQEEAVGRLVEILPRENALLRPPVANVDFAIIVTSLR 94
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV--------LNTWKSRLHTWGYEP 139
+P+ L FLV ES GI + L K +L+ + ++ ++ GY+
Sbjct: 95 EPEFSYNLLDYFLVFVESHGIQPIILLTKYDLLVAALGQDQAQAQVDQIRATYQAAGYD- 153
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L + +++ L+++ +++ T V++G SGVGKS+L+N L AA ++
Sbjct: 154 LLVNDQTQQSLEAVKHLIQEGTYVVMGQSGVGKSTLLNQL------IPAAAIET------ 201
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G +S+ RGKHTTR V+L G +ADTPGF+ L ++ K+ L Q
Sbjct: 202 ----------GAISSSLNRGKHTTREVTLYRYH-QGLIADTPGFSAVDLSQIAKEDLGQY 250
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
FPEI +C F +CLH+ EPGC VK RYQ Y Q+ +++ ++
Sbjct: 251 FPEIHR-----ASLECRFRSCLHINEPGCQVKALVDQGQIAASRYQNYQQIFAKLQAQK 304
>gi|447913817|ref|YP_007395229.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus faecium
NRRL B-2354]
gi|445189526|gb|AGE31168.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus faecium
NRRL B-2354]
Length = 299
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDTLG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|422879741|ref|ZP_16926206.1| GTP-binding protein [Streptococcus sanguinis SK1059]
gi|422929586|ref|ZP_16962527.1| GTP-binding protein [Streptococcus sanguinis ATCC 29667]
gi|422932555|ref|ZP_16965486.1| GTP-binding protein [Streptococcus sanguinis SK340]
gi|332365152|gb|EGJ42915.1| GTP-binding protein [Streptococcus sanguinis SK1059]
gi|339614826|gb|EGQ19516.1| GTP-binding protein [Streptococcus sanguinis ATCC 29667]
gi|339618306|gb|EGQ22904.1| GTP-binding protein [Streptococcus sanguinis SK340]
Length = 292
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLIGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKLAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|387784912|ref|YP_006070995.1| putative GTPase engC [Streptococcus salivarius JIM8777]
gi|338745794|emb|CCB96160.1| putative GTPase engC [Streptococcus salivarius JIM8777]
Length = 290
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 141/309 (45%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQKIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 IFS-------LEELLPLLTDKITVFMGQTGVGKSTLLN--RIAPELK------------- 174
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 175 -------LETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + E RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGQIWQVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 TYKKTVKRK 290
>gi|410638332|ref|ZP_11348896.1| ribosome-associated GTPase [Glaciecola lipolytica E3]
gi|410142252|dbj|GAC16101.1| ribosome-associated GTPase [Glaciecola lipolytica E3]
Length = 343
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 156/316 (49%), Gaps = 52/316 (16%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI 69
+ +D D +G C +R + V+ GDKV G G+IE V R + +
Sbjct: 49 KHADVQDASGEVTKCHIRRTIGS----VVCGDKVEFRPGKDANEGVNGVIELVHDRISVL 104
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L + R+LV +E I L LNK+E+++
Sbjct: 105 TRPDFYDGVKPIAANIDQIIIVSSV-LPALSLNIIDRYLVASEDVQIKPVLLLNKIEMLN 163
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+E ++ +++L + GY+ L S ++ G+ L Q L D+ +V VG SGVGKSS++N
Sbjct: 164 DEERSSVEAQLQIYKDIGYQVLLTSCKTGEGIAQLKQNLSDKVSVFVGQSGVGKSSIVNQ 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT +L GGG L
Sbjct: 224 LL--PDA--------------------DEAIGDISDNSGLGQHTTTAAKMLHFPGGGDLI 261
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD 293
D+PG + +L ++ + + F E ++ + C F +C HL +PGC+++ GD
Sbjct: 262 DSPGVREFALWHLSVEKVTSGFIEFRDYI-----GGCKFRDCKHLDDPGCIIRQAAQNGD 316
Query: 294 --WERYQYYFQLLDEI 307
+RY+ Y ++L +
Sbjct: 317 ISMQRYESYHKILSSM 332
>gi|419720358|ref|ZP_14247594.1| ribosome small subunit-dependent GTPase A [Lachnoanaerobaculum
saburreum F0468]
gi|383303458|gb|EIC94907.1| ribosome small subunit-dependent GTPase A [Lachnoanaerobaculum
saburreum F0468]
Length = 305
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 37/304 (12%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G I + R ++ P VAN+
Sbjct: 31 ERKGQIFACKAKGIFRNIGVKPLVGDNVDFEITDTKDFEGNIVKIHTRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WG 136
D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T G
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYTDAG 148
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
++ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 149 FKNIIASTVEDGGLKTLKETLKGEVNVLAGASGVGKSSITNIL--APKA----------- 195
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 ---------NMDTNTVSRKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDKEEL 246
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRI 309
F E + KC F C+H+ EP C VK E RYQ Y ++ +E+
Sbjct: 247 RFHFNEFTKY-----EGKCRFAGCMHINEPDCAVKEALEKEYISESRYQSYKKMYEEMSE 301
Query: 310 REEF 313
R +
Sbjct: 302 RRRY 305
>gi|315611879|ref|ZP_07886798.1| ribosome small subunit-dependent GTPase A [Streptococcus sanguinis
ATCC 49296]
gi|315316057|gb|EFU64090.1| ribosome small subunit-dependent GTPase A [Streptococcus sanguinis
ATCC 49296]
Length = 301
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ T GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLSDRGELDFYEQTYRTIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 255 HEPSCAVKPAVEEGAIATFRFDNYLQFLSEIENRRE 290
>gi|425046815|ref|ZP_18450803.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
510]
gi|403023152|gb|EJY35438.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
510]
Length = 299
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHREETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|315651139|ref|ZP_07904171.1| GTP-binding protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486604|gb|EFU76954.1| GTP-binding protein [Lachnoanaerobaculum saburreum DSM 3986]
Length = 305
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 35/303 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G I + R ++ P VAN+
Sbjct: 31 ERKGQIFACKAKGIFRNIGVKPLVGDNVDFEITDTKDFEGNIVKIHTRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L + G+
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALE-YAKIYSDAGF 149
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 150 KNIIASTVEDGGLKTLKEALKGEVNVLAGASGVGKSSITNIL--APEA------------ 195
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 --------NMDTNTVSKKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDKEELR 247
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F E + KC F C+H+ EP C VK E RYQ Y ++ +E+ R
Sbjct: 248 FHFNEFTKY-----EGKCRFAGCMHINEPDCAVKEALEKEYISESRYQSYKKMYEEMSER 302
Query: 311 EEF 313
++
Sbjct: 303 RKY 305
>gi|162447122|ref|YP_001620254.1| RNA-binding GTPase [Acholeplasma laidlawii PG-8A]
gi|161985229|gb|ABX80878.1| RNA-binding GTPase [Acholeplasma laidlawii PG-8A]
Length = 294
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 135/265 (50%), Gaps = 38/265 (14%)
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MI V +R E++ P VAN+D +LL+FS +P L +FLV + + + ++KV
Sbjct: 56 MITEVLERKNELIRPDVANIDQVLLVFSAMRPDFSFNLLDKFLVILKHHELTPVIVVSKV 115
Query: 118 ELVDEEVLNTWKSRLHTW--GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
+L+ +E L + K L + Y+ + + ++++G+D+L D+ T++ G +G GKS+L
Sbjct: 116 DLMTDENLKSLKEDLKFYEPFYDIHYVNSKARIGIDTLDGIFEDKITILAGQTGAGKSTL 175
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+NALR P L + + E+S GRGKHTTRH L GGG
Sbjct: 176 LNALR----------------PEL------ELKTQEISDALGRGKHTTRHSELYEF-GGG 212
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF-NNCLHLGEPGCVVKGDW 294
Y+ DTPGF++ +L F + A +C F ++CLH+ EP C+VK
Sbjct: 213 YICDTPGFSKVDFEFHDYTTLKDYFVDF-----AKYSDQCKFGHSCLHINEPNCMVKEKI 267
Query: 295 E-------RYQYYFQLLDEIRIREE 312
+ RY Y ++ ++ R+E
Sbjct: 268 KSKEILQSRYDSYLNFVEILKNRKE 292
>gi|418576399|ref|ZP_13140545.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
gi|379325461|gb|EHY92593.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
Length = 291
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 136/296 (45%), Gaps = 46/296 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD VV ++ V G I +V +R EI PPV+NVDHL+L+ S +
Sbjct: 28 RGLFRKNKFSPIVGD-VVDFEVENVTE-GYIHHVHERKNEIKRPPVSNVDHLILVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P L RFLV A S + + + K +L E + + L + Y+ F S+
Sbjct: 86 PDFSTQLLDRFLVIAHSYHMRPRILVTKKDLTSLEKQHDIEKLLEVYENMSYKTQFISIN 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + D V+ G SGVGKS+L+N K+F
Sbjct: 146 E--DIEQVFSSWGDGLAVLSGQSGVGKSTLLN------------------------KYFP 179
Query: 206 DQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ + +S RG+HTTRHV L G++ADTPGF+ + K + F EI
Sbjct: 180 NIEIETQHISKALNRGRHTTRHVELFE-RAKGFIADTPGFSALDYDHIQKDEIKNYFMEI 238
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
E A C F +C H+ EP C VK + E RY +Y QL EI R+E
Sbjct: 239 HEY-----SATCKFRDCNHINEPKCNVKAELENGNIAQFRYDHYLQLFKEISNRKE 289
>gi|229828528|ref|ZP_04454597.1| hypothetical protein GCWU000342_00592 [Shuttleworthia satelles DSM
14600]
gi|229793122|gb|EEP29236.1| hypothetical protein GCWU000342_00592 [Shuttleworthia satelles DSM
14600]
Length = 355
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 107/208 (51%), Gaps = 22/208 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K + + GD V + D VD G I ++ +R + ++ P VANVD L++F+
Sbjct: 25 CKARGAFRKKKIKPVAGDAVEIEITDPVDAEGNIVSIAERRSLLIRPAVANVDQALVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV E IP T+ NKV+LVD E + + Y F S +
Sbjct: 85 ARKPMPNFNLLDRFLVMMEQAEIPTTILFNKVDLVDREEIERIRRIYAASAYPIHFMSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LGLD + ++L ++TT + GPSGVGKSSLIN L+S+ A
Sbjct: 145 ENLGLDEIRRQLSNRTTTVAGPSGVGKSSLINRLQSATRMQTAG---------------- 188
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSG 233
+S K GRG+HTTRH L+PL G
Sbjct: 189 ------ISVKLGRGRHTTRHSELIPLEG 210
>gi|340756153|ref|ZP_08692784.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. D12]
gi|340573048|gb|EFS23742.2| ribosome small subunit-dependent GTPase A [Fusobacterium sp. D12]
Length = 254
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 128/273 (46%), Gaps = 45/273 (16%)
Query: 51 DWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ + I
Sbjct: 4 DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHSMYEKI 63
Query: 109 PLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165
+ +NK++L+ E L ++ + L F S + + G+++L Q +D+ T I
Sbjct: 64 RPCVIINKIDLLTETELEEFRKQFNFLQALSIPLFFISQKEQKGIEALKQFFQDKVTAIG 123
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
GPSGVGKSSLIN L+ + GE+S K RGKHTTR
Sbjct: 124 GPSGVGKSSLINLLQEV----------------------KALETGEISKKLQRGKHTTRD 161
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284
LLPL GGY+ DTPGF+ L + + L FPE + C F +C H+
Sbjct: 162 SRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQ------RKESCKFGDCHHIH 215
Query: 285 EPGCVVKG-------DWERYQY----YFQLLDE 306
EP C V+ ERYQ+ Y+QL E
Sbjct: 216 EPFCAVRKAVEEGEISKERYQFFTDIYYQLKTE 248
>gi|414160522|ref|ZP_11416788.1| ribosome small subunit-dependent GTPase A [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878042|gb|EKS25931.1| ribosome small subunit-dependent GTPase A [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 291
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 138/294 (46%), Gaps = 42/294 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD +V I+ V G I +V +R E+ PPV+N+DHL+++ S +
Sbjct: 28 RGLFRKKKFSPIVGD-IVDFEIENVTE-GYIHHVHERQNELKRPPVSNIDHLIIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P + RFLV A S + + + K ++ E + + L + GY+ F +
Sbjct: 86 PNFSTQLVDRFLVIAHSYELRPRIVVTKKDMASETQIAQIEKDLAVYQAIGYQTQFVGKD 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++++ D V+ G SGVGKS+L+NA R P L
Sbjct: 146 DD--VEAIFDAWGDGLAVLSGQSGVGKSTLLNAYR----------------PDL------ 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
++S RGKHTTRHV L G++ADTPGF+ + K + F EI+E
Sbjct: 182 QLETNQISKSLNRGKHTTRHVELFERK-RGFVADTPGFSALDFDHIQKDEVKDYFLEIQE 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+ C F NC H+ EP C VK E RY +Y QL +EI R+E
Sbjct: 241 YGQ-----DCKFRNCNHMKEPKCNVKAQVEAGNIAEFRYAHYVQLFEEIAARKE 289
>gi|87121901|ref|ZP_01077786.1| ribosome-associated GTPase [Marinomonas sp. MED121]
gi|86162699|gb|EAQ63979.1| ribosome-associated GTPase [Marinomonas sp. MED121]
Length = 342
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 38/248 (15%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P AN+DH++++ + +P + R+LV AE+ GIP + LNK++L+DE +
Sbjct: 119 LKPIAANIDHIIVVVAA-EPLAHANLIDRYLVAAETAGIPPVILLNKIDLIDESNKESLD 177
Query: 130 SRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
L T+ GY+ L S + K +D L + L D+T+V VG SGVGKSSL+N L
Sbjct: 178 QLLQTYDDLGYQVLRTSTKQKDSMDDLYRFLGDKTSVFVGQSGVGKSSLVNTLLPGV--- 234
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
D VGE+S K +G HTT L + GG L D+PG +
Sbjct: 235 -------------------DLSVGELSQKRKKGTHTTTTARLFHMPKGGDLIDSPGIREF 275
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQY 299
L ++ + L + F E +E L C F +C H EPGC ++ E RYQ
Sbjct: 276 GLWHISIEELLEGFIEFREHL-----GYCRFRDCAHEEEPGCALQQAREENKISDIRYQS 330
Query: 300 YFQLLDEI 307
+ ++ + I
Sbjct: 331 FLRIKNSI 338
>gi|315222375|ref|ZP_07864280.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
F0211]
gi|315188536|gb|EFU22246.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
F0211]
Length = 292
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D++ L+ + GY ++
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIHPIIYISKLDLLEDDKELDVFLEVYQAIGY-------DT 136
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LLQ L + TV +G +GVGKS+L+N + A D+
Sbjct: 137 AKTVEELLQFLIRKKTVFMGQTGVGKSTLLNKI--------APDL--------------K 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R++ Y Q L EI R E
Sbjct: 234 SRS-----CKFRTCTHTHEPNCAVKPAVENGTIAAFRFEDYLQFLSEIEHRRE 281
>gi|425736799|ref|ZP_18855075.1| hypothetical protein C273_00330 [Staphylococcus massiliensis S46]
gi|425483271|gb|EKU50423.1| hypothetical protein C273_00330 [Staphylococcus massiliensis S46]
Length = 291
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEILDPPVANVDHLLLLFS 85
R + +K K +VGD D+ + G+I ++ R + PPV+N+DHL+++ S
Sbjct: 28 RGIFRKKKSSPIVGDMA-----DFEEENAGEGIIHHIHPRKNALKRPPVSNIDHLVIVMS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P+ L RFLV A S G+ + + K ++ E + L+ + GY+ +F
Sbjct: 83 AVEPEFSTQLLDRFLVIAHSYGLDPVILVTKKDIASEAAITQITDYLNIYEAIGYQTMFV 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + V+ G SGVGK++L+ N + P L
Sbjct: 143 GAHDD--IQHVFASFGKGLAVLSGQSGVGKTTLM----------------NHYAPTL--- 181
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S RG+HTTRHV L + GY+ADTPGF+ + ++L F +
Sbjct: 182 ---NLETNEISKSLNRGRHTTRHVELYE-TESGYVADTPGFSALDFDHIEAKALKDYFID 237
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+K A C F +CLH+ EP C VK + E RY +Y LL E++ R+E
Sbjct: 238 LKA-----SSASCKFRDCLHINEPKCNVKAELEAGHIAQFRYDHYVTLLKELQNRKE 289
>gi|427392430|ref|ZP_18886435.1| ribosome small subunit-dependent GTPase A [Alloiococcus otitis ATCC
51267]
gi|425731391|gb|EKU94209.1| ribosome small subunit-dependent GTPase A [Alloiococcus otitis ATCC
51267]
Length = 293
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 136/294 (46%), Gaps = 41/294 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L +K + LVGD V + D G I V R ++ PP+AN+D ++ S
Sbjct: 28 ARGLFRKKELTPLVGDYVTFDLEEGQD--GTILEVKDRKNLLVRPPIANIDLAFVISSAV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPLFCSV 144
PK L R LV ES I + ++K++L ++++ K GY+ C
Sbjct: 86 DPKFSQQLLDRMLVVLESIHIQPAIYISKLDLAPHDLVHEIKVLQDYYQNLGYD-FLCPE 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ ++ + + + V +G SGVGKS L+N L D N
Sbjct: 145 DGQVNQGQMQAIIGHKRVVFMGQSGVGKSRLLNQLN---------DQLNLL--------- 186
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
G+ S GRG+HTTRHV LLP+ GY+ADTPGF+ L + K+ L+Q FPE
Sbjct: 187 ----TGQTSKALGRGRHTTRHVELLPIF-EGYIADTPGFSSLDLEGIEKEELSQYFPEF- 240
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIRE 311
A+C F+ CLH EP C VK D RY++Y L+EI R+
Sbjct: 241 ----WARRAQCKFSGCLHYKEPKCAVKAGVETGDLDSNRYRHYVYFLEEIMTRK 290
>gi|291458609|ref|ZP_06597999.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291419142|gb|EFE92861.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 303
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 142/302 (47%), Gaps = 42/302 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVANVDHLLLL 83
C + + + + + LVGD+V + + DR G + + +R ++L P V+NVD ++L
Sbjct: 26 CRAKGIFRNRREKPLVGDEVELSPVQNSDRERSGNLIRILRRKNQLLRPEVSNVDQAVVL 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWG-YEP 139
FS+ P L RFL+ E IP+ + NK +L+ +E R++ Y
Sbjct: 86 FSLRDPSPSLPLLDRFLIHMEMQEIPVRILFNKADLLVTEEERERALELQRIYEGASYSV 145
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
SV + LL R +++V+ GPSGVGKSSLIN + P A
Sbjct: 146 RLLSVRRADCREELLSLFRGKSSVLSGPSGVGKSSLINLI--HPEAR------------- 190
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S K RGK+TTRH L Y+ DTPGF+ + + + L
Sbjct: 191 -------METGELSRKIRRGKNTTRHTEFFYLDEESYVMDTPGFSSLYVSGIEAERLRYF 243
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEP--GCVVKGDW-------ERYQYYFQLLDEIRIR 310
+PE ++ +C + +C+H+GEP C VK ERY+ Y QL EIR +
Sbjct: 244 YPEFEKF-----RGECRYKSCVHIGEPLRDCRVKRALSEGEIPRERYESYRQLYREIRDQ 298
Query: 311 EE 312
EE
Sbjct: 299 EE 300
>gi|335357198|ref|ZP_08549068.1| GTPase [Lactobacillus animalis KCTC 3501]
Length = 295
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 150/312 (48%), Gaps = 53/312 (16%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDPPV 74
GVE R +K K+ LVGD WV+ + G I ++ R +++ PP+
Sbjct: 21 GVEYRTRARGNFRKKKQTPLVGD--------WVEFKAQKADEGYILEIYPRKNQLVRPPM 72
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D L++ + QP L R L E+ + L +K +L+ EE L+
Sbjct: 73 ANLDTALVVTACVQPDFSSNLLDRQLAMLEANDVSPVLYFSKYDLLTEEQKAKLDPILNY 132
Query: 135 WG-YEPLF-CSVESKL-GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ + P++ S+ ++ L+++L L Q V++G +G GKS+L+N L
Sbjct: 133 YAKFYPVYRGSLPARPETLETMLANLHHQVIVVMGQTGAGKSTLLNQL------------ 180
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
EP L + GE+S RG+HTTR VSLLP+ G LADTPGF+ LL++
Sbjct: 181 ----EPSL------ELATGEISKALSRGRHTTRKVSLLPI-GDNLLADTPGFSSFELLEI 229
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
TK+ L FP++ A C F C+H+ EP C VK E RY Y QL
Sbjct: 230 TKEQLPTLFPDL-----VAHQADCKFRGCMHINEPKCAVKAAVEAGEIMPSRYANY-QLF 283
Query: 305 DEIRIREEFQLR 316
++ I ++ + R
Sbjct: 284 HDMIINQKPKYR 295
>gi|431744822|ref|ZP_19533688.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2071]
gi|430604982|gb|ELB42404.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2071]
Length = 299
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQIYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|430824317|ref|ZP_19442881.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0120]
gi|430867723|ref|ZP_19482621.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1574]
gi|430441332|gb|ELA51447.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0120]
gi|430550110|gb|ELA89919.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1574]
Length = 299
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 42/292 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY + V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQIYTKIGYPVI---VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE E C F
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SVHCKF 247
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRTFGTKR 322
C+H EPGC VK E RY Y Q L EI R+ + G ++
Sbjct: 248 RECMHAKEPGCEVKHRVETGGIAQTRYDNYLQFLQEIEKRKPMYAKKEGKRK 299
>gi|293364729|ref|ZP_06611446.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316179|gb|EFE56615.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 301
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I N+ +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILNIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 255 HEPSCAVKPAVEEGTIATFRFDNYLQFLSEIENRRE 290
>gi|431753361|ref|ZP_19542035.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2620]
gi|430612268|gb|ELB49319.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2620]
Length = 299
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 140/298 (46%), Gaps = 55/298 (18%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLFCSVESKLG-LDSL 153
LV E I + L K +L D EE+ T+ GY + V + G L
Sbjct: 99 LVTLEYESIEPLIFLTKTDLSDDPKKIEEIKQTYTK----IGYPVI---VPNHAGDTTEL 151
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
++ ++ +V +G SG GKS+L+N + SP + A GE+S
Sbjct: 152 IRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEIS 189
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV LLP+ G +ADTPGF+ L + L + FPE E A
Sbjct: 190 DALGRGRHTTRHVELLPIY-DGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SA 243
Query: 274 KCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C F C+H EPGC VK GD RY Y Q L EI R + TK+EG
Sbjct: 244 HCKFRECMHAKEPGCEVKQRVETGDIAQTRYDNYLQFLQEIEKR-----KPMYTKKEG 296
>gi|78188307|ref|YP_378645.1| GTPase EngC [Chlorobium chlorochromatii CaD3]
gi|78170506|gb|ABB27602.1| GTPase EngC [Chlorobium chlorochromatii CaD3]
Length = 319
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
RS E + AN+D L+ + S +P L + R+LV AES +P+ L +NK +L DEE
Sbjct: 91 RSKERVQVIAANIDQLVAVVSAFEPPLNRRLIDRYLVFAESEQLPILLVVNKCDLDDEED 150
Query: 125 LNTWKSRL----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+++ + H GY L+ S E+ G++ L Q L + + G SGVGKS+LIN L
Sbjct: 151 GSSYVREMMHPYHALGYSVLYTSAENGEGVEELRQALAHKLSAFSGHSGVGKSTLINMLS 210
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
E R E + K+G+G HTT + +L L GG + DT
Sbjct: 211 GQ----------------------ERLRTAETNVKTGKGLHTTTNAVMLVLPDGGAIIDT 248
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------D 293
PG + +L +T+ +L F E ++ A+C++++C H EP C V+ D
Sbjct: 249 PGLREFTLADITRDNLRFYFREFLPVM-----AQCAYSSCTHTVEPECAVRNAAESGTID 303
Query: 294 WERYQYYFQLLDEI 307
ERY+ Y L D I
Sbjct: 304 PERYESYLALYDSI 317
>gi|449903801|ref|ZP_21792344.1| ribosome-associated GTPase [Streptococcus mutans M230]
gi|449947154|ref|ZP_21807230.1| ribosome-associated GTPase [Streptococcus mutans 11SSST2]
gi|449966210|ref|ZP_21812238.1| ribosome-associated GTPase [Streptococcus mutans 15VF2]
gi|450007783|ref|ZP_21827919.1| ribosome-associated GTPase [Streptococcus mutans NMT4863]
gi|450030399|ref|ZP_21833189.1| ribosome-associated GTPase [Streptococcus mutans G123]
gi|450070611|ref|ZP_21847668.1| ribosome-associated GTPase [Streptococcus mutans M2A]
gi|450179819|ref|ZP_21886826.1| ribosome-associated GTPase [Streptococcus mutans 24]
gi|449168956|gb|EMB71749.1| ribosome-associated GTPase [Streptococcus mutans 11SSST2]
gi|449170283|gb|EMB73006.1| ribosome-associated GTPase [Streptococcus mutans 15VF2]
gi|449185993|gb|EMB87848.1| ribosome-associated GTPase [Streptococcus mutans NMT4863]
gi|449192842|gb|EMB94245.1| ribosome-associated GTPase [Streptococcus mutans G123]
gi|449213712|gb|EMC14041.1| ribosome-associated GTPase [Streptococcus mutans M2A]
gi|449248758|gb|EMC46983.1| ribosome-associated GTPase [Streptococcus mutans 24]
gi|449260420|gb|EMC57921.1| ribosome-associated GTPase [Streptococcus mutans M230]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 139/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L+ L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLIPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|422711155|ref|ZP_16768088.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0027]
gi|315034820|gb|EFT46752.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0027]
Length = 297
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 131/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKH TRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHPTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|188585967|ref|YP_001917512.1| ribosome small subunit-dependent GTPase A [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350654|gb|ACB84924.1| ribosome small subunit-dependent GTPase A [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 288
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 140/288 (48%), Gaps = 38/288 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C ++ L K LVGD V+V + +GMI ++ R ++ P VANVD ++++ S
Sbjct: 26 CKLKGNLIKDNNFPLVGDVVLVELTG--EGQGMISDLSSRENRLVKPAVANVDQVIVVTS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK + R LV A G+ + +NK EL D + T SV+
Sbjct: 84 VKNPKPNLQLVDRLLVWAYFEGLQGMVCINKREL-DYQKAQELAEIYKTSEINTTLISVK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LD L + ++T+V+ G SGVGKSS++N L P L
Sbjct: 143 EN-DLDHLPKFFENKTSVLAGQSGVGKSSILNTLN----------------PDL------ 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ V VS K+G GKHTTRH LL +GGG+L DTPGFN+ L ++ + L FPEIK+
Sbjct: 180 NLEVNPVSRKAGTGKHTTRHCQLLK-AGGGFLVDTPGFNKKKLPEIVPEQLELAFPEIKK 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307
+ C FN+C H EP C VK RY+++ + +E+
Sbjct: 239 -----HSSDCKFNDCSHRKEPDCQVKKLVGTDIPTTRYEHFVKFFEEL 281
>gi|422868034|ref|ZP_16914588.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1467]
gi|329576769|gb|EGG58262.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1467]
Length = 297
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 131/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
L GD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LEGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|300861544|ref|ZP_07107628.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TUSoD Ef11]
gi|428768229|ref|YP_007154340.1| ribosome biogenesis GTPase, putative [Enterococcus faecalis str.
Symbioflor 1]
gi|300849005|gb|EFK76758.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TUSoD Ef11]
gi|427186402|emb|CCO73626.1| ribosome biogenesis GTPase, putative [Enterococcus faecalis str.
Symbioflor 1]
Length = 297
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 131/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EP C VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPDCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|227517274|ref|ZP_03947323.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|424677372|ref|ZP_18114224.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV103]
gi|424681014|ref|ZP_18117810.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV116]
gi|424685263|ref|ZP_18121963.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV129]
gi|424688617|ref|ZP_18125222.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV25]
gi|424690591|ref|ZP_18127123.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV31]
gi|424694327|ref|ZP_18130730.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV37]
gi|424697945|ref|ZP_18134257.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV41]
gi|424701499|ref|ZP_18137671.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV62]
gi|424704549|ref|ZP_18140644.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV63]
gi|424711677|ref|ZP_18143889.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV65]
gi|424716456|ref|ZP_18145767.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV68]
gi|424721972|ref|ZP_18151039.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV72]
gi|424724710|ref|ZP_18153648.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV73]
gi|424727582|ref|ZP_18156211.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV81]
gi|424744477|ref|ZP_18172771.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV85]
gi|424753888|ref|ZP_18181817.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV93]
gi|227075281|gb|EEI13244.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|402352401|gb|EJU87252.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV116]
gi|402354665|gb|EJU89468.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV103]
gi|402359244|gb|EJU93886.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV129]
gi|402360076|gb|EJU94685.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV25]
gi|402363789|gb|EJU98247.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV31]
gi|402370983|gb|EJV05162.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV37]
gi|402371530|gb|EJV05687.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV62]
gi|402374181|gb|EJV08217.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV41]
gi|402381571|gb|EJV15274.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV63]
gi|402383109|gb|EJV16726.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV65]
gi|402387973|gb|EJV21425.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV68]
gi|402390009|gb|EJV23381.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV72]
gi|402393997|gb|EJV27196.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV73]
gi|402396257|gb|EJV29326.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV81]
gi|402398808|gb|EJV31725.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV85]
gi|402403414|gb|EJV36088.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV93]
Length = 297
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 131/282 (46%), Gaps = 44/282 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K Y + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALDYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE + C
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEF-----VAAASHC 247
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F C+H EPGC VK E RY+ Y Q L EI R
Sbjct: 248 KFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENR 289
>gi|223984320|ref|ZP_03634462.1| hypothetical protein HOLDEFILI_01756 [Holdemania filiformis DSM
12042]
gi|223963677|gb|EEF68047.1| hypothetical protein HOLDEFILI_01756 [Holdemania filiformis DSM
12042]
Length = 287
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 147/310 (47%), Gaps = 56/310 (18%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV------DRRGMIENVFQRSTEILD 71
D+ G + CV + K++R+ DK VG DWV D+ G IE + R ++
Sbjct: 17 DEEGRRVACVA---MGKVRRQ----DKPRVG--DWVEYTDFGDQTG-IERIRPRMNSLIR 66
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKS 130
PPVANVD L++ S P + R L + I L + K++LV ++ ++ W
Sbjct: 67 PPVANVDQALIVMSAKAPDFSCTLVDRILFLIVNASIKPVLCITKMDLVHPDDPVHGWIE 126
Query: 131 RLHTWGYEPLFCSVESKLGLD-SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
GYE + E LD +L LR + TV+ G SGVGKSSL+N L
Sbjct: 127 DYRQSGYEVVLSGREE---LDENLAGVLRGKVTVLTGQSGVGKSSLLNKLNPE------- 176
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
F+ Q E+S GRGKHTTRHV L ++ GG++ADTPGF+
Sbjct: 177 --------------FQLQ-TQEISKALGRGKHTTRHVELHEVA-GGWVADTPGFSSLDFS 220
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQ 302
++T LAQ+ P+ L +C F +C+H EPGC +K E RY Y
Sbjct: 221 RMTPTELAQSVPDFAPYL-----GRCRFRDCIHQNEPGCAIKQAVEDRQVSRIRYADYLD 275
Query: 303 LLDEIRIREE 312
L ++ R+E
Sbjct: 276 CLTLVQGRKE 285
>gi|424842699|ref|ZP_18267324.1| ribosome small subunit-dependent GTPase A [Saprospira grandis DSM
2844]
gi|395320897|gb|EJF53818.1| ribosome small subunit-dependent GTPase A [Saprospira grandis DSM
2844]
Length = 312
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 138/295 (46%), Gaps = 48/295 (16%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLL 83
K+ V VGD+V+ ++ GMI + R +L N+D LL+
Sbjct: 37 KLTNPVAVGDEVLFEQEKGLET-GMIHKILPRQNYVLRRSTRQKHHQHLIACNLDQALLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG---YEPL 140
++ +P ++ + RFL+ E+ IP + LNK +L DE+ L ++ +G Y+
Sbjct: 96 VTLREPNVKLGFIDRFLLTTEAYSIPTYIILNKADLYDEDDLEMYEGLKILYGRASYQTR 155
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ++ GL+ L L+D+ ++ G SGVGKSSLINAL P G
Sbjct: 156 LVSAQTGEGLEELKLLLKDKRSLFSGHSGVGKSSLINALV----------------PGFG 199
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
R EVS S +G HTT L L GG + DTPG + L + Q +A F
Sbjct: 200 ------LRTNEVSDYSQKGMHTTTFAELFTLPQGGEIIDTPGIKELGFLNLEPQDVAHNF 253
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
PEI E K C +NNCLH+ EP C VK E RYQ Y +++EI+
Sbjct: 254 PEIFEASK-----NCKYNNCLHINEPHCAVKAGLETGEIHELRYQSYLSIMEEIQ 303
>gi|417924566|ref|ZP_12568005.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK569]
gi|342835785|gb|EGU70015.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK569]
Length = 292
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIIYISKMDLLEDRSELDFYQQTYGDIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L QTF EI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQTFTEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIASFRFDNYLQFLSEIENRRE 281
>gi|325106097|ref|YP_004275751.1| ribosome small subunit-dependent GTPase A [Pedobacter saltans DSM
12145]
gi|324974945|gb|ADY53929.1| ribosome small subunit-dependent GTPase A [Pedobacter saltans DSM
12145]
Length = 306
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 115/242 (47%), Gaps = 37/242 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKS 130
AN+D L+ ++ P+ + RFLV AE+ IP TL NK++L EE +L + S
Sbjct: 86 AANMDQAFLIVTLASPRTSLGFIDRFLVTAEAYHIPATLIFNKLDLFSEEGLDILEDFMS 145
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY S +D + L+D+TT+ G SGVGKSSLIN L
Sbjct: 146 IYEDIGYPCYTVSANDGTNIDLIEDLLKDKTTLFSGHSGVGKSSLINKL----------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ N + + GE+S S GKHTT + L GG L DTPG + +
Sbjct: 195 IPNL-----------EIKTGEISDWSDSGKHTTTFAEMYDLPFGGKLIDTPGIRELGVFD 243
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDWE--RYQYYFQL 303
+ K+ LA FPE +E + C FNNC+H+ EPGC V G+ E RY Y +
Sbjct: 244 IDKKQLAHYFPEFRERMH-----DCKFNNCVHINEPGCAVLKALEDGEIEPSRYDSYLSI 298
Query: 304 LD 305
+
Sbjct: 299 YN 300
>gi|119357863|ref|YP_912507.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides DSM 266]
gi|119355212|gb|ABL66083.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides DSM 266]
Length = 322
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 126/248 (50%), Gaps = 34/248 (13%)
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
RS E +N++ L+++ + +P L + R+LV AES +P+ + +NK++L D++
Sbjct: 96 RSKEKKQVIASNIELLVIVVAAFEPPLSTRLIDRYLVFAESENLPVVIVVNKMDLDDDDE 155
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
+ + GY + SV K GL+ L Q L + + + G SGVGKSS+IN L
Sbjct: 156 IPALMAPYTLLGYTVILVSVRQKRGLEELDQLLSGKVSAMSGHSGVGKSSIINVL----- 210
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
G K + R S K+G+G HTT + +LPL GGYL DTPG
Sbjct: 211 --------------TGQKRMKTAR---TSYKNGKGVHTTSNAVMLPLISGGYLIDTPGIR 253
Query: 245 QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERY 297
+ SL ++++ L F E + + +CS+++C H EPGC V+G D +RY
Sbjct: 254 EFSLSGISREQLRFYFREFLQFM-----PECSYSSCSHTVEPGCRVRGAVEEGLVDPDRY 308
Query: 298 QYYFQLLD 305
+ Y L D
Sbjct: 309 ESYLVLYD 316
>gi|417935751|ref|ZP_12579068.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
X]
gi|343402660|gb|EGV15165.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
X]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ +K GY+ V SK + LL L ++ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYKQTYGAIGYD----FVTSK---EELLPLLTEKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI + + C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIARVSR-----DCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIANFRFDNYLQFLSEIENRRE 281
>gi|417848999|ref|ZP_12494928.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1080]
gi|339457292|gb|EGP69867.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1080]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I +++R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIYERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIIYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIAPFRFDNYLQFLSEIENRRE 281
>gi|307705633|ref|ZP_07642484.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK597]
gi|307620809|gb|EFN99894.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK597]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 YKGIHPIVYISKMDLLEDREELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEESTIAPFRFDNYLQFLSEIENRRE 281
>gi|365841973|ref|ZP_09383017.1| ribosome small subunit-dependent GTPase A [Flavonifractor plautii
ATCC 29863]
gi|364576615|gb|EHM53931.1| ribosome small subunit-dependent GTPase A [Flavonifractor plautii
ATCC 29863]
Length = 293
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 37/274 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV + C R + + LVGDKV+ +D + G+++ + R E P VAN+D L
Sbjct: 20 GVLVACRGRGKFRHQRITPLVGDKVIFTPLD--NGAGILDEILPRRNEFQRPAVANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEP 139
+++ S P +PF + R + AE + +NK +L EE+ T+++ G+
Sbjct: 78 VVIASGAIPVTDPFLIDRVVSIAEGRNCQPVICINKCDLDAAEELYQTYRA----AGFPT 133
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S E+ GL+ L + + + G SGVGKSS++NAL EP
Sbjct: 134 LRVSAETGEGLEELSGAIAGKVSAFTGNSGVGKSSILNAL----------------EP-- 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT---KQSL 256
F Q VGEVS K GRG+HTTRHV L L G +ADTPGF+ ++ + L
Sbjct: 176 ---GFRLQ-VGEVSDKLGRGRHTTRHVELFRLRSGAIVADTPGFSSFDTEEIELRRPEEL 231
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
TF E L+ +C F C H+ E GC V
Sbjct: 232 QYTFREFAPYLE-----QCRFTGCSHVKEKGCAV 260
>gi|307702975|ref|ZP_07639922.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
ATCC 35037]
gi|307623368|gb|EFO02358.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
ATCC 35037]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I N+ +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILNIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIATFRFDNYLQFLSEIENRRE 281
>gi|237744725|ref|ZP_04575206.1| GTPase [Fusobacterium sp. 7_1]
gi|229431954|gb|EEO42166.1| GTPase [Fusobacterium sp. 7_1]
Length = 288
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 20 CKLRGILKKTNNKYNCVVGDRV------KISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 73
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 74 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 133
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 134 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 175
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + +Q L
Sbjct: 176 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENRQELISL 231
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 232 FPEFSSI------ESCKFLNCSHTHEPGCNVKKEVEENKISKDRYDFYKKTLE 278
>gi|227484658|ref|ZP_03914974.1| possible GTP-binding protein EngC [Anaerococcus lactolyticus ATCC
51172]
gi|227237378|gb|EEI87393.1| possible GTP-binding protein EngC [Anaerococcus lactolyticus ATCC
51172]
Length = 289
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 40/282 (14%)
Query: 37 RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFAL 96
++ LVGD V + ++ D + I + R EI P +AN+D LL+ +++ P L + L
Sbjct: 35 KKPLVGDNVEIEILE--DDKAYITKLLARKNEIKRPNIANIDQLLVFITINDPPLNLYNL 92
Query: 97 TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
++L E I +T+ L K++L E + GYE + + + +
Sbjct: 93 DKYLAMCEYLNISVTIMLTKIDLAPCEKVEEISGIYKNIGYEVILIDNYKDFPQEKIREI 152
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+ +T+ + G SGVGKS+ ++ L +D E +G++S KS
Sbjct: 153 LKGKTSAVSGASGVGKSTFLSNL-----------IDAEIE------------IGDISQKS 189
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPEIKEMLKANEPAKC 275
RGK+TTRH + L+ ++ DTPGF+ L + ++ L F E+++ C
Sbjct: 190 KRGKNTTRHTEIFKLAKDTFIFDTPGFDSFDLDFLEDENDLKNNFVELRD-------RDC 242
Query: 276 SFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIR 310
F +C H+ EP C VK D E RY+ Y QL +E++ R
Sbjct: 243 KFKDCNHINEPSCRVKEDLEKGKISASRYKNYIQLFEELKQR 284
>gi|256544912|ref|ZP_05472283.1| GTP-binding protein [Anaerococcus vaginalis ATCC 51170]
gi|256399411|gb|EEU13017.1| GTP-binding protein [Anaerococcus vaginalis ATCC 51170]
Length = 287
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 41/297 (13%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+C R + +K + LVGD V + + +G I + R EI P +AN+D +L
Sbjct: 22 FMCKARGVFRKKNIKPLVGDNVEFDITE--NSKGYITKILDRKNEIKRPNIANIDQILYF 79
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ P L F + ++L E I + + ++K +L DE+ L K GY+ +F
Sbjct: 80 ITIKNPSLNLFNIDKYLAMCEHINIDVVIIVSKKDLADEKDLEFIK-MYEKIGYKLVFID 138
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + +L+ L +T+ + G SGVGKS+ +N L
Sbjct: 139 NYNDFPKNEILKILDGKTSAVSGSSGVGKSTFLNNL------------------------ 174
Query: 204 FEDQ-RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED+ +G +S KS RGK+TTRH+ + L + DTPGF+ + + + +
Sbjct: 175 VEDEIEIGTISEKSKRGKNTTRHIEIFNLGKNTNIFDTPGFDSFDIDFIDDEK------D 228
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREE 312
+K K + C FNNC H+ EP C VK D RY+ Y L +EI+ R +
Sbjct: 229 LKYCFKEFDNNSCKFNNCNHINEPKCKVKDDLLKGFVEKTRYENYLLLFEEIKKRRQ 285
>gi|450051680|ref|ZP_21840967.1| ribosome-associated GTPase [Streptococcus mutans NFSM1]
gi|449201692|gb|EMC02675.1| ribosome-associated GTPase [Streptococcus mutans NFSM1]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 139/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGYKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L+ L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLIPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|399909445|ref|ZP_10777997.1| GTPase RsgA [Halomonas sp. KM-1]
Length = 344
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 155/320 (48%), Gaps = 55/320 (17%)
Query: 11 SRTSDCN-DKTGVELLCVVRALLKKIKRRVLVGDKVV-------VGSI--DWVDRRGMIE 60
RT D D G + C +RA L+ + + GD+V+ G+I V R +
Sbjct: 54 GRTLDVQEDGDGPTVRCHLRANLEGL----VTGDRVIWRAAEDAEGNITEGVVVARSERQ 109
Query: 61 NVFQR--STEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
NV +R + L P AN+D +L++F+ +P P + R+LV AE+TGI L LNK++
Sbjct: 110 NVLERPDARGQLKPVAANIDQILIVFAA-EPAPHPNLIDRYLVAAEATGISPVLVLNKID 168
Query: 119 LVDEE--VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176
L+ E+ L +R GY + + GLD+L RL ++T+V VG SGVGKSSLI
Sbjct: 169 LLPEDGGELRALLTRYEALGYPVVSTTTARAEGLDALHARLAERTSVFVGQSGVGKSSLI 228
Query: 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSGG 234
+ L E R+G +S S +G HTT L LP +
Sbjct: 229 DRLLPD----------------------ESLRIGALSKDSRKGTHTTTTARLYRLPTADD 266
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC-----V 289
L D+PG + L+ + +Q +A+ F E +++L C F +C H EPGC V
Sbjct: 267 AELIDSPGIREFGLVHLDEQQVAEGFIEFRDLL-----GHCRFRDCRHRHEPGCALLEAV 321
Query: 290 VKGDW--ERYQYYFQLLDEI 307
+GD ER+ Y ++D +
Sbjct: 322 ERGDIHPERFASYRHIVDSL 341
>gi|365839615|ref|ZP_09380850.1| ribosome small subunit-dependent GTPase A [Anaeroglobus geminatus
F0357]
gi|364564456|gb|EHM42223.1| ribosome small subunit-dependent GTPase A [Anaeroglobus geminatus
F0357]
Length = 284
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 38/285 (13%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD V + ++G+IE R + P VAN+D + ++ + P
Sbjct: 31 KMKEKILVGDMVEFTATGA--QKGVIEKTEPRKNSLRRPAVANIDAMFIVMAAAAPDPSR 88
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
F + + L+ E GI +L NK +L D+ + + + GY S + G+DSL
Sbjct: 89 FLIDQMLMTCEYDGIHPSLCFNKCDL-DKPLAEEYAAFYRRCGYAAYPVSACTGEGIDSL 147
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
L + T GPSGVGKSSL+ +R I+G + VG+VS
Sbjct: 148 KALLDGKVTAFAGPSGVGKSSLL--MR-----------------IIG----RELAVGKVS 184
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
K GRG+HTTRH ++ L Y+ DTPGF+ + ++ + P++ A
Sbjct: 185 DKIGRGRHTTRHSEIMKLREHTYVIDTPGFSALDFTHLKEKEITSLMPDL-----AKYSG 239
Query: 274 KCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIRE 311
C F++CLH EP C VK ERY Y ++ D I R+
Sbjct: 240 HCRFSSCLHRSEPDCSVKQALAAGKILRERYDTYCKIEDSIAERK 284
>gi|422880873|ref|ZP_16927329.1| GTP-binding protein [Streptococcus sanguinis SK355]
gi|332365861|gb|EGJ43618.1| GTP-binding protein [Streptococcus sanguinis SK355]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE L+++ GYE L
Sbjct: 84 EPDFNTNLLDRFLVLLEHKRIHPIIYISKLDLLEDERSLDSYVDVYQAIGYEVLRSP--- 140
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 141 ----EQLLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIVEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|312793233|ref|YP_004026156.1| ribosome small subunit-dependent gtpase a [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180373|gb|ADQ40543.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 39/295 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV+ I+ +I+ + R +++ PP+ANVD +++ +
Sbjct: 27 CRARGVFRKDDIVPLVGDNVVI--IEKSKGAYVIDKILPRKNQLIRPPIANVDIAIVVVA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P++ AL + LV + + +NK++L D + K + + + + S +
Sbjct: 85 SVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF--DVIGVSAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L + ++ + +V G SGVGKSS++N L P A
Sbjct: 143 TGEGIDKLKEYIQGRISVFAGQSGVGKSSILNCL--IPGA-------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L +PE +
Sbjct: 181 NLKVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELKYYYPEFYD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C F C H+ EP C+VK ++ERY+ Y Q+ ++ ++E+
Sbjct: 241 F------EGCKFPGCNHIFEPECLVKAAVTEKKINFERYERYKQIFMQLPAQKEY 289
>gi|257888651|ref|ZP_05668304.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|424762078|ref|ZP_18189604.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX1337RF]
gi|431043195|ref|ZP_19492994.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1590]
gi|431763477|ref|ZP_19552027.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3548]
gi|257824705|gb|EEV51637.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|402425840|gb|EJV57984.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX1337RF]
gi|430561639|gb|ELB00902.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1590]
gi|430622250|gb|ELB58987.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3548]
Length = 299
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 140/298 (46%), Gaps = 55/298 (18%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPLFCSVESKLG-LDSL 153
LV E I + L K +L D EE+ T+ GY + V + G L
Sbjct: 99 LVTLEYESIEPLIFLTKTDLSDDPKKIEEIKQTYTK----IGYPVI---VPNHAGDTTEL 151
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
++ ++ +V +G SG GKS+L+N + SP + A GE+S
Sbjct: 152 IRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEIS 189
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273
GRG+HTTRHV LLP+ G +ADTPGF+ L + L + FPE E A
Sbjct: 190 DALGRGRHTTRHVELLPIY-DGLVADTPGFSSIDFLTIEAGELPRQFPEFVEA-----SA 243
Query: 274 KCSFNNCLHLGEPGCVVK-----GDWE--RYQYYFQLLDEIRIREEFQLRTFGTKREG 324
C F C+H EPGC VK GD RY Y Q L EI R + TK+EG
Sbjct: 244 HCKFRECMHAKEPGCEVKQRVETGDIAQTRYVNYLQFLQEIEKR-----KPMYTKKEG 296
>gi|422822517|ref|ZP_16870710.1| GTP-binding protein [Streptococcus sanguinis SK353]
gi|324989787|gb|EGC21730.1| GTP-binding protein [Streptococcus sanguinis SK353]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 135/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ D++ L+ + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDKQSLDVYVQPYQAIGYEVLKATEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRICTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|419778035|ref|ZP_14303937.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK10]
gi|383187788|gb|EIC80232.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK10]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 131/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSIKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+D+ L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPVVYISKMDLLDDRGELDFFQQTYRAIGYD----FVTSK---EELLPLLTAKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPE+ A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEV-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLQFLSEIENRRE 281
>gi|307710851|ref|ZP_07647278.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK321]
gi|307617296|gb|EFN96469.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK321]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKGPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK G LL L + TV
Sbjct: 101 HKGIHPIIYISKMDLLEDREELDFYEQTYGDIGYD----FVTSKEG---LLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFYNYLQFLSEIENRRE 281
>gi|225418647|ref|ZP_03761836.1| hypothetical protein CLOSTASPAR_05871, partial [Clostridium
asparagiforme DSM 15981]
gi|225041827|gb|EEG52073.1| hypothetical protein CLOSTASPAR_05871 [Clostridium asparagiforme
DSM 15981]
Length = 237
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 22/219 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D + G I+ + R ++ P ANVD +++FS
Sbjct: 25 CKAKGVFRNKKIKPLVGDDVEFSVLDEEELTGNIDRILPRKNALVRPAAANVDQAMVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV E +P+ + NKV+L +++ + GYE F S
Sbjct: 85 ITHPAPNLNLLDRFLVMMERQQVPVVICFNKVDLCGGDLMEQYGRIYRQAGYEVEFISTI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD + +RL+ +TTV+ GPSGVGKSSL N L DAA
Sbjct: 145 DKRGLDRIRERLQGKTTVLAGPSGVGKSSLTNELH-----PDAA---------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
G++S K RGKHTTRH L + ++ DTPGF+
Sbjct: 184 -METGDISRKIERGKHTTRHSQLFHIGEDTFMMDTPGFS 221
>gi|373115329|ref|ZP_09529504.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670483|gb|EHO35563.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 293
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 37/274 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV + C R + + LVGDKV+ +D + G+++ + R E P VAN+D L
Sbjct: 20 GVLVACRGRGKFRHQRIIPLVGDKVIFTPLD--NGAGILDEILPRRNEFQRPAVANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEP 139
+++ S P +PF + R + AE + +NK +L EE+ T+++ G+
Sbjct: 78 VVIASGAIPVTDPFLIDRVVSIAEGRNCQPVICINKCDLDAAEELYQTYRA----AGFPT 133
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S E+ GL+ L + + + G SGVGKSS++NAL EP
Sbjct: 134 LRVSAETGEGLEELSGAIAGKASAFTGNSGVGKSSILNAL----------------EP-- 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT---KQSL 256
F Q VGEVS K GRG+HTTRHV L L G +ADTPGF+ ++ + L
Sbjct: 176 ---GFRLQ-VGEVSDKLGRGRHTTRHVELFRLRSGAIVADTPGFSSFDTEEIELRRPEEL 231
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
TF E L+ +C F C H+ E GC V
Sbjct: 232 QYTFREFAPYLE-----QCRFTGCSHVKEKGCAV 260
>gi|47093056|ref|ZP_00230834.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
str. 4b H7858]
gi|47018557|gb|EAL09312.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 4b str. H7858]
Length = 225
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 124/252 (49%), Gaps = 40/252 (15%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLN 126
+ PPVAN+D +L+FS +P RFLV E I + ++K++L E E +
Sbjct: 1 MRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIA 60
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+K GY+ + E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 61 VYKDIYEAIGYDVFVTNDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL- 117
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+
Sbjct: 118 ---------------------KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSI 155
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQY 299
+ ++L FPE++ + + C F C+H EP C VK E RY++
Sbjct: 156 EWDDLQPETLQFCFPEME-----DRRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKH 210
Query: 300 YFQLLDEIRIRE 311
Y Q+L E++ R+
Sbjct: 211 YIQILQELKNRK 222
>gi|312622706|ref|YP_004024319.1| ribosome small subunit-dependent GTPase a [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203173|gb|ADQ46500.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
kronotskyensis 2002]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 39/295 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANVD +++ +
Sbjct: 27 CRARGVFRKDDITPLVGDNVVI--VEKSKGSYIIDKILPRKNQLIRPPIANVDIAIVVVA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P++ AL + LV + + +NK++L D + K + + + + S +
Sbjct: 85 SVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF--DVIGVSAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L ++ + +V G SGVGKSS++N L P A
Sbjct: 143 TGEGIDKLKNYIQGRISVFAGQSGVGKSSILNCL--IPGA-------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L +PE +
Sbjct: 181 NLKVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIMGLLRNDLKYYYPEFYD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C F C H+ EP C+VK ++ERY+ Y Q+ ++ ++E+
Sbjct: 241 F------EGCRFPGCNHIFEPDCMVKAAVTEKKINFERYERYKQIFMQLPAQKEY 289
>gi|410617083|ref|ZP_11328059.1| ribosome-associated GTPase [Glaciecola polaris LMG 21857]
gi|410163352|dbj|GAC32197.1| ribosome-associated GTPase [Glaciecola polaris LMG 21857]
Length = 342
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 148/303 (48%), Gaps = 51/303 (16%)
Query: 29 RALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI--------LDPPVANVD 78
R +++ V+ GD+V+ G + G+IE V R T + + P AN+D
Sbjct: 62 RCHIRRTVISVVCGDEVLFRPGKDGTENISGVIEIVHDRKTVLTRPDFYDGVKPVAANID 121
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--- 135
++++ S+ P L + R+LV +E GI + LNKVEL+++ + +LH +
Sbjct: 122 QIIIVSSV-IPALSLNIIDRYLVASEDVGIEPVILLNKVELLNDSEREDVEKQLHIYHDI 180
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY ++ S +++ G+ L L+D+ +V VG SGVGKSS+IN L DA ++ N
Sbjct: 181 GYRVVYTSCKTQTGISDLALCLKDKISVFVGQSGVGKSSIINEL-----LPDAKEITN-- 233
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
EVS SG G+HTT LL GG L D+PG + +L + +
Sbjct: 234 ---------------EVSDNSGLGQHTTTTAKLLHFPQGGDLIDSPGVREFALWHMQMER 278
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL---LD 305
L F E ++ + C F +C H +PGC+++ E RYQ Y ++ LD
Sbjct: 279 LTWGFKEFRDYI-----GGCKFRDCTHADDPGCIIRAAAEKGDISMLRYQSYHKILSNLD 333
Query: 306 EIR 308
E+R
Sbjct: 334 ELR 336
>gi|406595379|ref|YP_006746509.1| GTPase RsgA [Alteromonas macleodii ATCC 27126]
gi|406372700|gb|AFS35955.1| GTPase RsgA [Alteromonas macleodii ATCC 27126]
Length = 330
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 140/293 (47%), Gaps = 45/293 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERATVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
D+PG + L + + + F E ++ L C F +C HL +PGC+++
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIEFRDYL-----GGCKFRDCKHLNDPGCLLR 311
>gi|227536004|ref|ZP_03966053.1| GTP-binding protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227244117|gb|EEI94132.1| GTP-binding protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 306
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 110/219 (50%), Gaps = 30/219 (13%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D LL+ ++ P + RFLV AE+ +P L NK++L EE L+ K H
Sbjct: 87 ANLDQALLVVTLASPPTSLGFIDRFLVTAEAYSVPAMLVFNKLDLFSEEGLDILKEYEHI 146
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY S + ++ L L+D+ T++ G SGVGKS+LINAL P A
Sbjct: 147 YESIGYPCYEVSALEGINVEELKDLLKDRVTLVSGHSGVGKSTLINAL--IPEAG----- 199
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+ G +S S +GKHTT ++ L GG L DTPG + ++ +
Sbjct: 200 ---------------LKTGSISDWSDKGKHTTTFAEMMDLPFGGKLIDTPGIRELGIVDI 244
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
Q L+ FPE++ +L KC FNNC H+ EPGC V
Sbjct: 245 EPQELSHFFPEMRALLN-----KCRFNNCRHVNEPGCAV 278
>gi|288800847|ref|ZP_06406304.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 299 str. F0039]
gi|288332308|gb|EFC70789.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 299 str. F0039]
Length = 310
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 37/263 (14%)
Query: 54 DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLA 113
DR+ I Q ++ ANVD L+ +++ P+ + RFL AE+ IP+TL
Sbjct: 65 DRKNYIVRKSQNLSKQSHILAANVDQAFLIVTVNYPQTSTGFIDRFLASAEAYNIPVTLV 124
Query: 114 LNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGV 170
NK +L+ E+ L+ +H T GYE + S E+ G++ L ++L ++ TV+ G SGV
Sbjct: 125 FNKKDLLQEDELHYQDMLIHLYETIGYECMAISAETGEGVEKLKKQLVNKITVLSGNSGV 184
Query: 171 GKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230
GKS+LIN + + + R E+S G HTT +LP
Sbjct: 185 GKSTLINKVLLANY----------------------MRTSEISDVHNTGMHTTTFSEMLP 222
Query: 231 LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
+ GGY+ DTPG + + + F EI E K C FNNC H EPGC V
Sbjct: 223 IEEGGYIIDTPGIKGFGSFNMEPEEICSYFKEIFEFSK-----DCRFNNCSHTHEPGCAV 277
Query: 291 KGDWE-------RYQYYFQLLDE 306
E RY Y +L++
Sbjct: 278 LKGLENHYIAESRYNSYLSMLED 300
>gi|126662389|ref|ZP_01733388.1| ribosome-associated GTPase [Flavobacteria bacterium BAL38]
gi|126625768|gb|EAZ96457.1| ribosome-associated GTPase [Flavobacteria bacterium BAL38]
Length = 325
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 139/310 (44%), Gaps = 52/310 (16%)
Query: 21 GVELLCVVRAL--LKKIKRR--VLVGDKVVVGSIDWVDRR-GMIENVFQRSTEILDPPV- 74
G L C ++ +K IK + VGD V + D G+I + +R I+ V
Sbjct: 20 GAFLECRIKGKFRMKGIKSTNPIAVGDVVDYDIENTTDETTGVITTIHERKNYIVRKSVN 79
Query: 75 ---------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
+N+D + LL +++ P + RFLV AE+ GI + NK++ D+ L
Sbjct: 80 LSHQMHIIASNIDVVFLLVTINNPPTTTSFIDRFLVTAEAYGIEAVIVFNKIDTFDDPTL 139
Query: 126 NTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
+ H + GY+ L S + G+D L ++D+ ++ G SGVGKS+L+N L
Sbjct: 140 DEQLYLQHVYSSIGYKCLRVSAKDGKGIDELKALMKDKVSMFSGHSGVGKSTLVNTL--- 196
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
EP L K ++S +GKHTT + LS G + DTPG
Sbjct: 197 -------------EPSLNLK------TKQISESHAQGKHTTTFAEMFDLSFGAQIIDTPG 237
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWE 295
++ + KQ + FPE + +C FNNCLH EP C VK W
Sbjct: 238 IRGFGIVDMEKQEIGDYFPEFFAL-----KDQCKFNNCLHKDEPHCAVKNALEKDEITWS 292
Query: 296 RYQYYFQLLD 305
RY+ Y Q+L+
Sbjct: 293 RYKSYTQILE 302
>gi|392426896|ref|YP_006467890.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
acidiphilus SJ4]
gi|391356859|gb|AFM42558.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
acidiphilus SJ4]
Length = 297
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 138/296 (46%), Gaps = 44/296 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + + IE R + P +ANVD LL+F+
Sbjct: 25 CSLRGRFRIKDQDFLPGDRVRI--LPEGNNKARIEGAEPRLNSLTRPSIANVDQALLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-------DEEVLNTWKSRLHTWGYE 138
+ PK + L R L++ + I + K++ D ++ GY
Sbjct: 83 LTSPKPDLNLLDRLLIQVTCSEIEPLIIFTKLDKYLTEAPPDDSLAKSSIPDIYRRIGYT 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
S ++ +G+ L + L ++ +V+ GPSG GKSSL NAL SD +
Sbjct: 143 VFEVSNKTGIGITELRKCLEEKISVLAGPSGAGKSSLFNAL------SDGKQL------- 189
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ GE+S KS RG+HTTRHV L+ + GG +ADTPGF+ L K+ ++ LA
Sbjct: 190 ---------KTGEISQKSQRGRHTTRHVELM-VCAGGLVADTPGFSSLFLPKMKREDLAT 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E C F++CLH EP C +K E RY +Y L E+
Sbjct: 240 YFPEFDEHRN-----HCRFSSCLHDKEPDCAIKAAQENGEISGTRYDHYRIFLQEV 290
>gi|73662860|ref|YP_301641.1| GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|83288045|sp|Q49X02.1|RSGA_STAS1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|72495375|dbj|BAE18696.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 291
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 136/296 (45%), Gaps = 46/296 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD VV ++ V G I +V +R EI PPV+NVDHL+++ S +
Sbjct: 28 RGLFRKNKFSPIVGD-VVDFEVENVTE-GYIHHVHERKNEIKRPPVSNVDHLIIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P L RFLV A S + + + K +L E + + L + Y+ F S+
Sbjct: 86 PDFSTQLLDRFLVIAHSYHMRPRILVTKKDLTSLEKQHDIEKLLEVYENMSYKTQFISIN 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + D V+ G SGVGKS+L+N K+F
Sbjct: 146 E--DIEQVFSSWGDGLAVLSGQSGVGKSTLLN------------------------KYFP 179
Query: 206 DQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ + +S RG+HTTRHV L G++ADTPGF+ + K + F EI
Sbjct: 180 NIEIETQHISKALNRGRHTTRHVELFE-RAKGFIADTPGFSALDYDHIQKDEIKNYFMEI 238
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
E A C F +C H+ EP C VK + E RY +Y QL EI R+E
Sbjct: 239 HEY-----GATCKFRDCNHINEPKCNVKAELENGNIAQFRYDHYLQLFKEISNRKE 289
>gi|344995751|ref|YP_004798094.1| ribosome biogenesis GTPase RsgA [Caldicellulosiruptor lactoaceticus
6A]
gi|343963970|gb|AEM73117.1| ribosome biogenesis GTPase RsgA [Caldicellulosiruptor lactoaceticus
6A]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 144/295 (48%), Gaps = 39/295 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV+ I+ +I+ + R +++ PP+ANVD +++ +
Sbjct: 27 CRARGVFRKDDIVPLVGDNVVI--IEKSKGAYVIDKILPRKNQLIRPPIANVDIAIVVVA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P++ AL + LV + + +NK++L D + K + + + + S +
Sbjct: 85 SVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF--DVIGVSAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L + ++ +V G SGVGKSS++N L P A
Sbjct: 143 NGEGIDKLKEYIQGIISVFAGQSGVGKSSILNCL--IPGA-------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +VGE+S K RGKHTTR V LL Y+ADTPGF+ ++ + + L +PE +
Sbjct: 181 NLKVGEISKKIERGKHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELKYYYPEFYD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C F C H+ EP C+VK ++ERY+ Y Q+ ++ ++E+
Sbjct: 241 F------EGCKFPGCNHIFEPECLVKAAVTEKKINFERYERYKQIFMQLPAQKEY 289
>gi|423074024|ref|ZP_17062758.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DP7]
gi|361855118|gb|EHL07120.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DP7]
Length = 296
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILILNKIDLGSRGESTAENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
F E +++ +C F NC H EP C VK RY++Y Q L+E+
Sbjct: 240 YFWEFQDV------GECRFANCQHHKEPDCAVKAAVASGRIQPSRYEHYCQFLEEV 289
>gi|342215157|ref|ZP_08707817.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589440|gb|EGS32717.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 780 str. F0422]
Length = 242
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
I+ + R + P +AN+D ++++ + +P + P L R LV + IP L +NK +
Sbjct: 9 IDTIEPRRNSLRRPAIANIDQVIVVVAAREPDIHPLLLDRLLVMIHHSHIPPVLVINKYD 68
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
L E+ + KS GY L S + G++ L L + + GPSGVGKSSL+NA
Sbjct: 69 LHTEDTMK-LKSIYENIGYTVLCTSTYTGEGIEELRHVLHGKISAFAGPSGVGKSSLLNA 127
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ D + F+ G VS K RG+HTTRH SL L ++
Sbjct: 128 V----------DPNFAFQ------------TGAVSDKIKRGRHTTRHASLYSLDESSFIM 165
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------ 292
DTPGF+ +T + L TFPE + + C+F+ C H EP C VK
Sbjct: 166 DTPGFSALEHTGMTVEELVHTFPEFDDHDRG-----CNFSPCSHSHEPICSVKDALANGQ 220
Query: 293 -DWERYQYYFQLLDEI 307
+ +RYQ Y + E+
Sbjct: 221 INEQRYQSYLTIKSEL 236
>gi|222529038|ref|YP_002572920.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
bescii DSM 6725]
gi|222455885|gb|ACM60147.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
bescii DSM 6725]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 39/295 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANVD +++ +
Sbjct: 27 CRARGVFRKDDITPLVGDNVVI--VEKSKGSYIIDKILPRKNQLIRPPIANVDIAIVVVA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P++ AL + LV + + +NK++L D + K + + + + S +
Sbjct: 85 SVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF--DVIGVSAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L ++ + +V G SGVGKSS++N L P A
Sbjct: 143 TGEGIDKLKNYIQGRISVFAGQSGVGKSSILNCL--IPGA-------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L +PE +
Sbjct: 181 NLKVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELKYYYPEFYD 240
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREEF 313
C F C H+ EP C+VK ++ERY+ Y Q+ ++ ++E+
Sbjct: 241 F------EGCKFPGCNHIFEPECLVKAAVTEKKINFERYERYKQIFMQLPAQKEY 289
>gi|450125199|ref|ZP_21867538.1| ribosome-associated GTPase [Streptococcus mutans U2A]
gi|449232772|gb|EMC31869.1| ribosome-associated GTPase [Streptococcus mutans U2A]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGYKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLNRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNTAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|387786806|ref|YP_006251902.1| ribosome-associated GTPase [Streptococcus mutans LJ23]
gi|449864827|ref|ZP_21778642.1| ribosome-associated GTPase [Streptococcus mutans U2B]
gi|449870097|ref|ZP_21780456.1| ribosome-associated GTPase [Streptococcus mutans 8ID3]
gi|449881325|ref|ZP_21784393.1| ribosome-associated GTPase [Streptococcus mutans SA38]
gi|449909416|ref|ZP_21794238.1| ribosome-associated GTPase [Streptococcus mutans OMZ175]
gi|449918896|ref|ZP_21797607.1| ribosome-associated GTPase [Streptococcus mutans 1SM1]
gi|449926133|ref|ZP_21800605.1| ribosome-associated GTPase [Streptococcus mutans 4SM1]
gi|449935658|ref|ZP_21803513.1| ribosome-associated GTPase [Streptococcus mutans 2ST1]
gi|449959552|ref|ZP_21810251.1| ribosome-associated GTPase [Streptococcus mutans 4VF1]
gi|450001566|ref|ZP_21825727.1| ribosome-associated GTPase [Streptococcus mutans N29]
gi|450034190|ref|ZP_21834210.1| ribosome-associated GTPase [Streptococcus mutans M21]
gi|450062284|ref|ZP_21844226.1| ribosome-associated GTPase [Streptococcus mutans NLML5]
gi|450097799|ref|ZP_21857659.1| ribosome-associated GTPase [Streptococcus mutans SF1]
gi|450105722|ref|ZP_21860059.1| ribosome-associated GTPase [Streptococcus mutans SF14]
gi|450109760|ref|ZP_21861667.1| ribosome-associated GTPase [Streptococcus mutans SM6]
gi|450119800|ref|ZP_21865286.1| ribosome-associated GTPase [Streptococcus mutans ST6]
gi|450137848|ref|ZP_21871871.1| ribosome-associated GTPase [Streptococcus mutans NLML1]
gi|450144221|ref|ZP_21873909.1| ribosome-associated GTPase [Streptococcus mutans 1ID3]
gi|450155728|ref|ZP_21878435.1| ribosome-associated GTPase [Streptococcus mutans 21]
gi|450161097|ref|ZP_21880363.1| ribosome-associated GTPase [Streptococcus mutans 66-2A]
gi|450171123|ref|ZP_21883845.1| ribosome-associated GTPase [Streptococcus mutans SM4]
gi|450176913|ref|ZP_21886089.1| ribosome-associated GTPase [Streptococcus mutans SM1]
gi|379133207|dbj|BAL69959.1| ribosome-associated GTPase [Streptococcus mutans LJ23]
gi|449150933|gb|EMB54681.1| ribosome-associated GTPase [Streptococcus mutans 1ID3]
gi|449157089|gb|EMB60539.1| ribosome-associated GTPase [Streptococcus mutans 8ID3]
gi|449159882|gb|EMB63181.1| ribosome-associated GTPase [Streptococcus mutans 1SM1]
gi|449160910|gb|EMB64140.1| ribosome-associated GTPase [Streptococcus mutans 4SM1]
gi|449166327|gb|EMB69271.1| ribosome-associated GTPase [Streptococcus mutans 2ST1]
gi|449168843|gb|EMB71642.1| ribosome-associated GTPase [Streptococcus mutans 4VF1]
gi|449184427|gb|EMB86376.1| ribosome-associated GTPase [Streptococcus mutans N29]
gi|449196613|gb|EMB97868.1| ribosome-associated GTPase [Streptococcus mutans M21]
gi|449206027|gb|EMC06746.1| ribosome-associated GTPase [Streptococcus mutans NLML5]
gi|449222181|gb|EMC21915.1| ribosome-associated GTPase [Streptococcus mutans SF1]
gi|449224121|gb|EMC23773.1| ribosome-associated GTPase [Streptococcus mutans SF14]
gi|449225854|gb|EMC25427.1| ribosome-associated GTPase [Streptococcus mutans SM6]
gi|449230917|gb|EMC30155.1| ribosome-associated GTPase [Streptococcus mutans ST6]
gi|449234750|gb|EMC33741.1| ribosome-associated GTPase [Streptococcus mutans NLML1]
gi|449236790|gb|EMC35690.1| ribosome-associated GTPase [Streptococcus mutans 21]
gi|449239182|gb|EMC37911.1| ribosome-associated GTPase [Streptococcus mutans 66-2A]
gi|449244382|gb|EMC42759.1| ribosome-associated GTPase [Streptococcus mutans SM1]
gi|449244501|gb|EMC42874.1| ribosome-associated GTPase [Streptococcus mutans SM4]
gi|449251559|gb|EMC49569.1| ribosome-associated GTPase [Streptococcus mutans SA38]
gi|449261357|gb|EMC58834.1| ribosome-associated GTPase [Streptococcus mutans OMZ175]
gi|449264631|gb|EMC61968.1| ribosome-associated GTPase [Streptococcus mutans U2B]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|417939530|ref|ZP_12582822.1| ribulose-phosphate 3-epimerase [Streptococcus infantis SK970]
gi|343390248|gb|EGV02831.1| ribulose-phosphate 3-epimerase [Streptococcus infantis SK970]
Length = 514
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ + + E LL L D+ TV
Sbjct: 101 HRGIHPIVYISKMDLLEDGGELDFYEKTYRAIGYDFVTSNEE-------LLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RVVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIATFRFDNYLQFLSEIENRRE 281
>gi|193212055|ref|YP_001998008.1| ribosome small subunit-dependent GTPase A [Chlorobaculum parvum
NCIB 8327]
gi|254766356|sp|B3QL20.1|RSGA_CHLP8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|193085532|gb|ACF10808.1| ribosome small subunit-dependent GTPase A [Chlorobaculum parvum
NCIB 8327]
Length = 311
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ S D P + R+LV AES +PL + +NK++L +E ++
Sbjct: 97 ANIDQIVLITSFDDPPFNSRLVDRYLVFAESEHLPLLIVVNKIDLDEEGMVEEDLEVYRN 156
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
S E G++ L + LRD+ + G SGVGKS+LIN L
Sbjct: 157 LDCNICLVSAEDGRGIEELRELLRDRLSAFSGHSGVGKSTLINLLVGR------------ 204
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
E+ R E S K+G+G HTT ++ L GGGY+ DTPG + +L +T++
Sbjct: 205 ----------EELRTAETSGKTGKGVHTTTSSAMFQLPGGGYVIDTPGIREFNLAGITRE 254
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEI 307
+L + E + +C+F++C H EPGC V + D ERY+ Y LLD +
Sbjct: 255 NLRFYYTEFLRFMP-----ECAFSSCSHTVEPGCAVIAAVESGRIDAERYESYLALLDSL 309
>gi|449893207|ref|ZP_21788606.1| ribosome-associated GTPase [Streptococcus mutans SF12]
gi|449255993|gb|EMC53829.1| ribosome-associated GTPase [Streptococcus mutans SF12]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRNIWEKRYQTYLQILSEIENRRE 281
>gi|289764533|ref|ZP_06523911.1| GTPase [Fusobacterium sp. D11]
gi|289716088|gb|EFD80100.1| GTPase [Fusobacterium sp. D11]
Length = 297
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 139/293 (47%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIIKIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H+ EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSSI------ESCKFLNCSHVHEPGCNVKKEVEENKISKDRYDFYKKTLE 287
>gi|374338767|ref|YP_005095484.1| ribosome small subunit-stimulated GTPase EngC [Streptococcus
macedonicus ACA-DC 198]
gi|372284884|emb|CCF03192.1| Ribosome small subunit-stimulated GTPase EngC [Streptococcus
macedonicus ACA-DC 198]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV + + T + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLVTTPDEIRTIQRQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ L+ LL L D+ TV +G +GVGKS+L+N + +P
Sbjct: 136 -FCT-----SLEELLPLLTDKVTVFIGQTGVGKSTLLNKI--APELK------------- 174
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L +
Sbjct: 175 -------LETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD-WE-RYQYYFQLLDEIRIREE 312
FPE++ + C F +C H EP C VK GD W+ RY Y Q L EI R E
Sbjct: 227 FPELRHL-----SHYCKFRSCTHTHEPSCAVKEALESGDLWQSRYDNYLQFLSEIENRRE 281
>gi|383934270|ref|ZP_09987712.1| GTPase RsgA [Rheinheimera nanhaiensis E407-8]
gi|383704726|dbj|GAB57803.1| GTPase RsgA [Rheinheimera nanhaiensis E407-8]
Length = 344
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 151/319 (47%), Gaps = 62/319 (19%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV-------VGSIDWVDRRGMIENVFQRS 66
+D D GV + R +++ ++ GDKVV G ID G+I+ V QR
Sbjct: 55 ADVEDSQGV----ITRCNMRRSVASLVTGDKVVWRRALQATGGID-----GVIDAVEQRH 105
Query: 67 TEILDP-------PVA-NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
+ +L P PVA N+D L+++ S P L + R+LV AE TGI L +NKV+
Sbjct: 106 SVLLRPDFYDGLKPVAANID-LMIIVSAILPALSLNIIDRYLVAAEITGIKPLLVINKVD 164
Query: 119 LVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
L+++ L+ + +L + GY+ L S ++ +G+ LL L T++ VG SGVGKSSL
Sbjct: 165 LLNDNELSAVEQQLDLYSKLGYDFLLVSAKTGMGMAQLLDYLHSGTSIFVGQSGVGKSSL 224
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+N+L A EVS SG G+HTT L L GG
Sbjct: 225 MNSLMPGLEA----------------------LTQEVSATSGLGQHTTTVSRLYHLPEGG 262
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295
L D+PG + +L +T + + + F E L +C F +C H+ +PGC + E
Sbjct: 263 DLIDSPGIREFALWHLTAEEVTRGFSEFTPWL-----GRCKFRDCKHVSDPGCAIMHAVE 317
Query: 296 -------RYQYYFQLLDEI 307
RY Y ++L +
Sbjct: 318 TGKVSQLRYDSYLKILASM 336
>gi|450087246|ref|ZP_21854144.1| ribosome-associated GTPase [Streptococcus mutans NV1996]
gi|449218288|gb|EMC18303.1| ribosome-associated GTPase [Streptococcus mutans NV1996]
Length = 290
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSKELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|221635557|ref|YP_002523433.1| ribosome small subunit-dependent GTPase A [Thermomicrobium roseum
DSM 5159]
gi|221158010|gb|ACM07128.1| ribosome small subunit-dependent GTPase A [Thermomicrobium roseum
DSM 5159]
Length = 329
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 135/299 (45%), Gaps = 47/299 (15%)
Query: 24 LLCVVRALLKKIKRRV-LVGDKVVVGSIDWVDRRGMIENVFQRST---------EILDPP 73
L CVVR LKK +RR LV V G+IE V R E
Sbjct: 34 LRCVVRGALKKERRREDLVVVGDRVVVRVVAPGEGVIEAVAPRRRALVRRARDREAAQVI 93
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VAN+D L+++ + QP+L L RFLV AES +P + LNK++L +
Sbjct: 94 VANLDQLVVVMAAAQPELSLGMLDRFLVVAESQDLPTVICLNKIDLDPAGRARAMLAPYR 153
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY + SV S GL L Q + + + + GPSGVGK+SL+ A
Sbjct: 154 AIGYPVVETSVASGAGLHELWQTIEGKLSALAGPSGVGKTSLVKA--------------- 198
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
F P L + R+G VS +GRG+HTT L+ L +L DTPG L +
Sbjct: 199 -FRPDL------ELRIGAVSEATGRGRHTTTASELIQLDERTFLVDTPGIGVLHLWAILP 251
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQ 302
+ L + F E + L A C + +C HL EPGC V+ G +ERY+ +Q
Sbjct: 252 EELDRCFREFRPYLGA-----CPYRDCRHLDEPGCAVRAAVEAGVIDAGRYERYRALYQ 305
>gi|340355043|ref|ZP_08677736.1| ribosome-associated GTP-binding protein [Sporosarcina newyorkensis
2681]
gi|339622724|gb|EGQ27238.1| ribosome-associated GTP-binding protein [Sporosarcina newyorkensis
2681]
Length = 293
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 146/296 (49%), Gaps = 40/296 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V + D + I +V R +E++ PP+ANVD +LL+FS
Sbjct: 25 CKSRGVFRLKGINPLVGD-IVTYTPDG-ENDATITDVHTRKSELVRPPIANVDQVLLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +P + L RFL ES + + ++K +L +++ + ++ L + GY L
Sbjct: 83 VVEPDMSLRLLDRFLTVIESHRLEPIIYVSKEDLANQQTIAENEANLAYYQRIGYTILRN 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ ++ L + +TTV+ G SGVGKS+L+N + P L
Sbjct: 143 VGNDEPLIEVLRPYISGKTTVLAGQSGVGKSTLLNTIL----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + G +S GRGKHTTRHV LL ++ G +ADTPGF+ + K+ L F E
Sbjct: 184 ---ELKTGVISDALGRGKHTTRHVELLEIA-DGLVADTPGFSSLDFEHIEKEELRDCFVE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
I E A E C F C+H+ EPGC VK E RY+ Y L EI R+
Sbjct: 240 ISE---AGE--GCKFRGCVHVKEPGCAVKAQVEEGTISEARYKNYLLFLQEIMDRK 290
>gi|339640359|ref|ZP_08661803.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453628|gb|EGP66243.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 291
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLIRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI L L+K++L++ + L+++ + GY+ V
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPILYLSKLDLLEVRDELDSFLQVYRSIGYD-----VAR 138
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+G LL L +TTV +G +GVGKS+L+N + A D+
Sbjct: 139 SVG--ELLPLLSMKTTVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VSL L+GG +ADTPGF+ L Q FPEI E
Sbjct: 175 LETGEISESLGRGRHTTRAVSLYNLNGGK-IADTPGFSSIDYEVSQADELNQAFPEIAE- 232
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C F C H EPGC VK + R+ Y Q L EI R E
Sbjct: 233 ----RSCSCKFRTCTHTHEPGCAVKPAVKDGQIASFRFDNYLQFLSEIENRRE 281
>gi|306824465|ref|ZP_07457811.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304433252|gb|EFM36222.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 301
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L +TTV
Sbjct: 110 HKGIHPIVYISKMDLLEDRGKLDFYQQTYGAIGYD----FVTSK---EELLPLLTGKTTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 254
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C V E R+ Y Q L EI R E
Sbjct: 255 HEPSCAVNPAVEEGIIASFRFDNYLQFLSEIENRRE 290
>gi|322375824|ref|ZP_08050335.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C300]
gi|321279092|gb|EFX56134.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C300]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIATFRFDNYLQFLSEIENRRE 281
>gi|422850040|ref|ZP_16896716.1| GTP-binding protein [Streptococcus sanguinis SK115]
gi|325688928|gb|EGD30936.1| GTP-binding protein [Streptococcus sanguinis SK115]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q F EI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFLEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
++ C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 234 SQS-----CKFRTCTHTHEPACAVKPAVESGQIASFRFDNYLQFLSEIENRRE 281
>gi|270290368|ref|ZP_06196593.1| ribosome small subunit-dependent GTPase A [Pediococcus acidilactici
7_4]
gi|270281149|gb|EFA26982.1| ribosome small subunit-dependent GTPase A [Pediococcus acidilactici
7_4]
Length = 309
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + D+ G I ++ R E++ PP+AN+D +++ + QP L R
Sbjct: 40 LVGD--VVDFKENSDQTGYITSIHPRKNELVRPPLANIDQAVVVTAATQPDFSANLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLD--SLL 154
LV I + +K +L+D E K + GY+ +F V K D +L
Sbjct: 98 LVALAEKKISAVIYFSKTDLLDNEAYQDLKQIADYYQKIGYQVVF-PVRQKDDADVKALR 156
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
+ ++ T+ +G +G GKS+L+N + +P L + + GEVS
Sbjct: 157 KLFAERLTIFMGQTGAGKSTLLNRI----------------DPDL------NIQTGEVSQ 194
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274
RGKHTTR VSL+ + GG +ADTPGF+ ++ ++ L + F EIK++ +
Sbjct: 195 ALNRGKHTTRKVSLMNID-GGLVADTPGFSSYAVFEMADMELKECFLEIKQIGQ-----N 248
Query: 275 CSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F CLHL EPGC VK E RY Y Q + IR
Sbjct: 249 CRFRECLHLNEPGCAVKAAVENGEILASRYANYEQFMGLIR 289
>gi|322386717|ref|ZP_08060341.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
gi|417921398|ref|ZP_12564889.1| ribosome small subunit-dependent GTPase A [Streptococcus cristatus
ATCC 51100]
gi|321268999|gb|EFX51935.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
gi|342834081|gb|EGU68356.1| ribosome small subunit-dependent GTPase A [Streptococcus cristatus
ATCC 51100]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 137/298 (45%), Gaps = 45/298 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDHVEFSADK--DSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + L+K++L+ DE L+T+ GY+ + SVE
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPLIYLSKLDLLEDEASLDTYVQAYQRIGYQ-VVRSVE- 141
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 142 -----DLLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDKGEDLNAAFPEIAEI 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEFQLRT 317
+ C F C H EP C VK E R++ Y Q L EI R E +T
Sbjct: 234 SR-----DCKFRTCTHTHEPACAVKPAVEAERIAAFRFENYLQFLSEIENRRETYKKT 286
>gi|385261510|ref|ZP_10039632.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK643]
gi|385193038|gb|EIF40426.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK643]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P+ L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPEFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIIYISKMDLLEDRGELDYYQQTYSAIGYD----FVTSK---EDLLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FP++ + + C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVATAEDLNQAFPDLAFVSR-----DCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPLCAVKPAVEEGSVATFRFDNYLQFLSEIENRRE 281
>gi|290581125|ref|YP_003485517.1| hypothetical protein SmuNN2025_1599 [Streptococcus mutans NN2025]
gi|449969652|ref|ZP_21813344.1| ribosome-associated GTPase [Streptococcus mutans 2VS1]
gi|450057325|ref|ZP_21842518.1| ribosome-associated GTPase [Streptococcus mutans NLML4]
gi|450066528|ref|ZP_21846011.1| ribosome-associated GTPase [Streptococcus mutans NLML9]
gi|450092909|ref|ZP_21856322.1| ribosome-associated GTPase [Streptococcus mutans W6]
gi|450150082|ref|ZP_21876431.1| ribosome-associated GTPase [Streptococcus mutans 14D]
gi|450164983|ref|ZP_21881626.1| ribosome-associated GTPase [Streptococcus mutans B]
gi|254998024|dbj|BAH88625.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449173986|gb|EMB76508.1| ribosome-associated GTPase [Streptococcus mutans 2VS1]
gi|449205397|gb|EMC06145.1| ribosome-associated GTPase [Streptococcus mutans NLML4]
gi|449208819|gb|EMC09382.1| ribosome-associated GTPase [Streptococcus mutans NLML9]
gi|449217700|gb|EMC17735.1| ribosome-associated GTPase [Streptococcus mutans W6]
gi|449233935|gb|EMC32975.1| ribosome-associated GTPase [Streptococcus mutans 14D]
gi|449241098|gb|EMC39743.1| ribosome-associated GTPase [Streptococcus mutans B]
Length = 290
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNIL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|304384754|ref|ZP_07367100.1| ribosome small subunit-dependent GTPase A [Pediococcus acidilactici
DSM 20284]
gi|304328948|gb|EFL96168.1| ribosome small subunit-dependent GTPase A [Pediococcus acidilactici
DSM 20284]
Length = 313
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + D+ G I ++ R E++ PP+AN+D +++ + QP L R
Sbjct: 44 LVGD--VVDFKENSDQTGYITSIHPRKNELVRPPLANIDQAVVVTAATQPDFSANLLDRQ 101
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLD--SLL 154
LV I + +K +L+D E K + GY+ +F V K D +L
Sbjct: 102 LVALAEKKISAVIYFSKTDLLDNEAYQDLKQIADYYQKIGYQVVF-PVRQKDDADVKALR 160
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
+ ++ T+ +G +G GKS+L+N + +P L + + GEVS
Sbjct: 161 KLFAERLTIFMGQTGAGKSTLLNRI----------------DPDL------NIQTGEVSQ 198
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274
RGKHTTR VSL+ + GG +ADTPGF+ ++ ++ L + F EIK++ +
Sbjct: 199 ALNRGKHTTRKVSLMNID-GGLVADTPGFSSYAVFEMADTELKECFLEIKQIGQ-----N 252
Query: 275 CSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F CLHL EPGC VK E RY Y Q + IR
Sbjct: 253 CRFRECLHLNEPGCAVKAAVENGEILASRYANYEQFMGLIR 293
>gi|427439945|ref|ZP_18924474.1| ribosome small subunit-dependent GTPase A [Pediococcus lolii NGRI
0510Q]
gi|425787777|dbj|GAC45262.1| ribosome small subunit-dependent GTPase A [Pediococcus lolii NGRI
0510Q]
Length = 309
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + D+ G I ++ R E++ PP+AN+D +++ + QP L R
Sbjct: 40 LVGD--VVDFKENSDQTGYITSIHPRKNELVRPPLANIDQAVVVTAATQPDFSANLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLD--SLL 154
LV I + +K +L+D E K + GY+ +F V K D +L
Sbjct: 98 LVALAEKKISAVIYFSKTDLLDNEAYQDLKQIADYYQKIGYQVVF-PVRQKDDADVKALR 156
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
+ ++ T+ +G +G GKS+L+N + +P L + + GEVS
Sbjct: 157 KLFAERLTIFMGQTGAGKSTLLNRI----------------DPDL------NIQTGEVSQ 194
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274
RGKHTTR VSL+ + GG +ADTPGF+ ++ ++ L + F EIK++ +
Sbjct: 195 ALNRGKHTTRKVSLMNID-GGLVADTPGFSSYAVFEMADTELKECFLEIKQIGQ-----N 248
Query: 275 CSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
C F CLHL EPGC VK E RY Y Q + IR
Sbjct: 249 CRFRECLHLNEPGCAVKAAVENREILASRYANYEQFMGLIR 289
>gi|322377596|ref|ZP_08052086.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. M334]
gi|321281361|gb|EFX58371.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. M334]
Length = 292
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGQLDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q+FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEASTAEDLNQSFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGAIATFRFDNYLQFLSEIENRRE 281
>gi|421276743|ref|ZP_15727563.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SPAR10]
gi|395876024|gb|EJG87100.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SPAR10]
Length = 292
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
I + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKDIHPIVYISKMDLLEDRRELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEELNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIANFRFDNYLQFLSEIENRRE 281
>gi|417939780|ref|ZP_12583069.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK313]
gi|343389975|gb|EGV02559.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK313]
Length = 292
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPYFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLQFLSEIENRRE 281
>gi|237741655|ref|ZP_04572136.1| GTPase [Fusobacterium sp. 4_1_13]
gi|294785734|ref|ZP_06751022.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_27]
gi|229429303|gb|EEO39515.1| GTPase [Fusobacterium sp. 4_1_13]
gi|294487448|gb|EFG34810.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_27]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 39/255 (15%)
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+F+R ++ P VANVD+L + F+ P ++ + L+ A + + +NK++ +
Sbjct: 16 IFKRDNMLIRPIVANVDYLAIQFAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLT 75
Query: 122 EEVLNTWKSRLHTWG--YEPLF-CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+E L K +L P+F S + L+ + L+D+TTVI GPSGVGKSS IN
Sbjct: 76 KEELCELKEKLSFLEKISVPMFLISCHQNISLEEVENFLKDKTTVIGGPSGVGKSSFINF 135
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L+S E IL + GE+S + RGKHTTR +++ + GGY+
Sbjct: 136 LQS--------------ERIL--------KTGEISERLQRGKHTTRDSNMIKMKAGGYII 173
Query: 239 DTPGFNQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
DTPGF+ + + ++ L FPE + C F NC H EPGC VK + E
Sbjct: 174 DTPGFSSIEVPNIENREELISLFPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEEN 227
Query: 296 -----RYQYYFQLLD 305
RY +Y + L+
Sbjct: 228 KISKDRYDFYKKTLE 242
>gi|423136515|ref|ZP_17124158.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371961669|gb|EHO79293.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 297
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 147/316 (46%), Gaps = 50/316 (15%)
Query: 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIE 60
V+V + + + N+K C +R +LKK K +VGD+V + I
Sbjct: 9 VVVNKIQGFYYVESNNKV---FECKLRGILKKTNNKYNCVVGDRV------EISEDNTIV 59
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+F+R ++ P VANVD+L + F+ P ++ + L+ A + + +NK++ +
Sbjct: 60 EIFKRDNMLIRPIVANVDYLAIQFAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYL 119
Query: 121 DEEVLNTWK---SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EE L K S L S +GL+ + L+D+ TVI GPSGVGKSS IN
Sbjct: 120 TEEELCELKEKLSFLEKISVPMFLISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFIN 179
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
L+S + + GE+S K RGKHTTR +++ + GGY+
Sbjct: 180 FLQSE----------------------KTLKTGEISEKLQRGKHTTRDSNMIKMKVGGYI 217
Query: 238 ADTPGFNQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE- 295
DTPGF+ + + ++ L FPE + C F NC H EPGC VK + E
Sbjct: 218 IDTPGFSSIEVPNIENREELISLFPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEE 271
Query: 296 ------RYQYYFQLLD 305
RY +Y + L+
Sbjct: 272 NKISKDRYDFYKKTLE 287
>gi|334365951|ref|ZP_08514896.1| ribosome small subunit-dependent GTPase A [Alistipes sp. HGB5]
gi|390946517|ref|YP_006410277.1| ribosome small subunit-dependent GTPase A [Alistipes finegoldii DSM
17242]
gi|313157846|gb|EFR57256.1| ribosome small subunit-dependent GTPase A [Alistipes sp. HGB5]
gi|390423086|gb|AFL77592.1| ribosome small subunit-dependent GTPase A [Alistipes finegoldii DSM
17242]
Length = 306
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 34/239 (14%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANVD LL+ ++ P+ + RFLV E+ +P+T+ L+K++L D + + + + +
Sbjct: 89 ANVDQALLMATLRSPETATEFVDRFLVTCEAYKVPVTILLSKIDLQDPQAVADFHAVYES 148
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + G+ ++ + L+ +TT++ G SGVGKS+LI A+
Sbjct: 149 AGYRVMEVSSATGEGVGAVHELLKGRTTLVSGNSGVGKSTLIRAI--------------- 193
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+P L D R GE+S +G+HTT ++ PL+ GG + DTPG L+ +
Sbjct: 194 -DPSL------DIRTGEISESHHKGRHTTTFSTMYPLAEGGAVIDTPGIKGFGLIDIDDA 246
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGD--WERYQYYFQLLDE 306
L FPE+ M A + C F NC H EPGC V +G + RY+ Y ++LDE
Sbjct: 247 ELWHYFPEM--MRTAPD---CRFYNCTHTHEPGCAVVEAVERGQIAYPRYESYLKILDE 300
>gi|260774666|ref|ZP_05883571.1| ribosome small subunit-stimulated GTPase EngC [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609385|gb|EEX35534.1| ribosome small subunit-stimulated GTPase EngC [Vibrio
coralliilyticus ATCC BAA-450]
Length = 351
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 155/325 (47%), Gaps = 66/325 (20%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIE 60
++ +E CN + G+E L + GDKV+ + S++ ++ G++E
Sbjct: 54 IEDAESGEIHRCNLRRGIETL--------------VSGDKVIWRAGLESMEGIN--GVVE 97
Query: 61 NVFQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
V RS+ + L P ANVD ++++ S+ P+L + R+LV +E+ I L
Sbjct: 98 AVEPRSSVLTRPDYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLVASETLNIAPLL 156
Query: 113 ALNKVELVDEEVLN---TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
LNK++L++EE N W S GY+ L S ++ G+ +L L+D+T + VG SG
Sbjct: 157 VLNKIDLLEEEQRNLYQEWLSEYERIGYKVLLVSKQTGEGIAALEAELKDRTNIFVGQSG 216
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSSL+NAL + + GEVS SG G+HTT L
Sbjct: 217 VGKSSLVNALMPEFNVEE----------------------GEVSENSGLGQHTTTASRLY 254
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289
+ GG L D+PG + L + + + + F E + L C F +C H +PGCV
Sbjct: 255 HIPTGGDLIDSPGVREFGLWHLEAEEVTKAFVEFRSYL-----GSCKFRDCKHNDDPGCV 309
Query: 290 VKGDWE-------RYQYYFQLLDEI 307
++ E R++ Y ++L+ +
Sbjct: 310 LREAVENGEISEVRFENYHRILESM 334
>gi|346224407|ref|ZP_08845549.1| GTPase RsgA [Anaerophaga thermohalophila DSM 12881]
Length = 308
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 125/274 (45%), Gaps = 47/274 (17%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQR-------------STEILDPPVANVDHLLLLFS 85
V VGD+V S D G+IE + +R T+IL AN+D +L+ +
Sbjct: 43 VAVGDRVKY-SFDQSSGVGVIEEILERRNFIVRRASNLSRQTQIL---AANIDQAILVAT 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++ P P + RFL E+ IP TL NK + D + LN S GY L
Sbjct: 99 INYPVTTPVFIDRFLATTEAYDIPTTLIFNKTDRYDHFHRDQLNETISIYKNIGYNVLAT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S L S+ + L+D+ +++ G SGVGKS+LIN + EP L K
Sbjct: 159 SARYDEDLQSVKELLKDKVSLLAGHSGVGKSTLINRI----------------EPSLNLK 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S GKHTT + PLS GGY+ DTPG L + K+ L+ F E
Sbjct: 203 ------TAKISDAHKTGKHTTTFAEMHPLSFGGYIIDTPGIRGFGLFNIEKEELSHFFRE 256
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296
I + +C + NC HL EPGC VK E+
Sbjct: 257 IFKY-----TPRCRYYNCTHLHEPGCAVKEAVEK 285
>gi|238852571|ref|ZP_04642981.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
202-4]
gi|238834717|gb|EEQ26944.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
202-4]
Length = 297
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSRVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F +
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELGNYFYD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+K+ KC F C H+ EPGC VK E RY Y ++ EI
Sbjct: 240 LKDA-----SVKCKFRRCQHIKEPGCEVKKLIEEGKIAKSRYDSYLKIRQEI 286
>gi|333907807|ref|YP_004481393.1| ribosome biogenesis GTPase RsgA [Marinomonas posidonica
IVIA-Po-181]
gi|333477813|gb|AEF54474.1| ribosome biogenesis GTPase RsgA [Marinomonas posidonica
IVIA-Po-181]
Length = 344
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 58/314 (18%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI-------- 69
G+ C +RA L ++ + GDKV+ W ++ G++ +R T +
Sbjct: 68 GISTRCNLRANLGQL----VTGDKVI-----WRPKQQAGGIVVATTERQTSLSRPDMHGR 118
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P AN+DH++++ + + P + R+LV AE+ GIP + LNK +L+++ +
Sbjct: 119 LKPVAANIDHIVIVIAAE-PVAHANLIDRYLVAAETVGIPPVILLNKCDLINDSNRDQLN 177
Query: 130 SRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+ L T+ Y + S + + G++SL Q L D+T+V VG SGVGKSSLI L
Sbjct: 178 ALLDTYEQLKYRIIRTSTKDQAGMESLYQFLGDKTSVFVGQSGVGKSSLIGTL------- 230
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
D+D VGE+S K +G HTT L + GG L D+PG +
Sbjct: 231 -LPDIDI--------------SVGELSQKRKKGTHTTTTARLFHMPKGGDLIDSPGIREF 275
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDW--ERYQY 299
L +++ L F E + + C F +C H EPGC + KG+ R+Q
Sbjct: 276 GLWHISEDELLNGFIEFRPHI-----GYCRFRDCAHEKEPGCAILEALDKGEISKHRFQS 330
Query: 300 YFQLLDEIRIREEF 313
Y ++ IR + F
Sbjct: 331 YLRIKQSIRENQAF 344
>gi|450045202|ref|ZP_21838324.1| ribosome-associated GTPase [Streptococcus mutans N34]
gi|449200682|gb|EMC01704.1| ribosome-associated GTPase [Streptococcus mutans N34]
Length = 290
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L++ + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLENLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|419782851|ref|ZP_14308648.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK610]
gi|383182777|gb|EIC75326.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK610]
Length = 292
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EDLLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GEVS GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEVSDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGAIATFRFDNYLQFLSEIENRRE 281
>gi|89895430|ref|YP_518917.1| hypothetical protein DSY2684 [Desulfitobacterium hafniense Y51]
gi|89334878|dbj|BAE84473.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 296
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + V NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILVLNKIDLGSRGESIVENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
F E +++ +C F +C H EP C VK RY++Y Q L+E+
Sbjct: 240 YFWEFQDV------GECRFADCQHHKEPDCAVKAAVASGRIQPSRYEHYCQFLEEV 289
>gi|239636300|ref|ZP_04677302.1| ribosome small subunit-dependent GTPase A [Staphylococcus warneri
L37603]
gi|239597655|gb|EEQ80150.1| ribosome small subunit-dependent GTPase A [Staphylococcus warneri
L37603]
Length = 291
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 139/293 (47%), Gaps = 42/293 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD +V + G I++V +R + PPV+N+D L+++ S +
Sbjct: 28 RGLFRKKKFSPIVGD--IVDFDVQNETEGYIQHVHERENALKRPPVSNIDTLVIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVE 145
P+ L RFLV A S G+ + + K ++ D+ E +N++ + GY F +
Sbjct: 86 PQFSTQLLDRFLVIAHSYGLDTRILVTKKDMADDNQIEKINSYLAIYEEIGYSTQFVGIN 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+L+Q V+ G SGVGKS+ +N F+P L
Sbjct: 146 DDQY--ALVQEWGKGLIVLSGQSGVGKSTFLNR----------------FKPEL------ 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+ ++S RGKHTTRHV L + G++ADTPGF+ + K L F EI
Sbjct: 182 NLDTNDISKSLNRGKHTTRHVELHE-TVNGFIADTPGFSALDFDHIDKDELKDYFIEI-- 238
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A +C F NC HL EP C VK + + RY++Y QL +EI R+
Sbjct: 239 ---AQYGTQCKFRNCNHLKEPKCKVKEELDVGNIAQFRYEHYLQLFNEISERK 288
>gi|418465484|ref|ZP_13036420.1| GTPase RsgA [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755965|gb|EHK90125.1| GTPase RsgA [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 346
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 145/314 (46%), Gaps = 52/314 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D + G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENAQGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVRPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIVSSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQAVDSQLEIYRNIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + RVGE+S+ SG G+HTT L L GG L
Sbjct: 225 AVL--PHV--------------------EARVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F +C HL +PGC ++ E
Sbjct: 263 IDSPGIREFGLWHLEDEQITKGYREFQTVL-----GTCKFRDCKHLNDPGCALRQAVEEG 317
Query: 296 -----RYQYYFQLL 304
RY+ Y +LL
Sbjct: 318 KISAVRYENYHRLL 331
>gi|332685783|ref|YP_004455557.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius ATCC 35311]
gi|332369792|dbj|BAK20748.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius ATCC 35311]
Length = 302
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 145/286 (50%), Gaps = 44/286 (15%)
Query: 36 KRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KR++ VGDKV+ S + D G I ++ R E+ P VANV+ +++ SM +P
Sbjct: 35 KRKIVPFVGDKVIFESKNSTD--GYILDILPRFNELERPTVANVNQGVIVTSMVKPLFSY 92
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC-SVESKL- 148
L RFL+ E+ I + L K++L++++ +++ + + GY + ++E K
Sbjct: 93 NLLDRFLIILENKKIKPIIYLTKIDLLNDDGSSDVHSIQKQYEQIGYPVILGNNLEMKYK 152
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ L Q ++ TV +G SG GKS+L+N + S+ + A
Sbjct: 153 GIEVLKQYFPEKLTVFMGQSGSGKSTLLNNISSNLTLATA-------------------- 192
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
E+S GRGKHTTRH+ L+P+ G +ADTPGF+ + K+ L + FP E +K
Sbjct: 193 --EISEVLGRGKHTTRHIELIPID-QGLVADTPGFSSIDFQTIEKERLPKLFP---EFVK 246
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
A C F C+H EPGC VK + RY Y Q L+EI
Sbjct: 247 A--APFCKFRECMHANEPGCEVKHRAKEGMIAKSRYDNYLQFLEEI 290
>gi|289167169|ref|YP_003445436.1| hypothetical protein smi_0296 [Streptococcus mitis B6]
gi|288906734|emb|CBJ21568.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+++ L+ +K GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRWELDFYKQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGAIATFRFDNYLQFLSEIENRRE 281
>gi|21674392|ref|NP_662457.1| hypothetical protein CT1574 [Chlorobium tepidum TLS]
gi|38257653|sp|Q8KC52.1|RSGA_CHLTE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|21647573|gb|AAM72799.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 311
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 34/241 (14%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VAN+D L+L+ S D P + R+LV AES +PL + +NK++L +E ++
Sbjct: 96 VANIDQLVLITSFDDPPFNSRLVDRYLVFAESEKLPLLIVVNKIDLDEEGMVEEDLEVYR 155
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
S E G++ L + LRD+ + G SGVGKS+LIN L
Sbjct: 156 QLDCNICLVSAEDGRGIEELRELLRDRVSAFSGHSGVGKSTLINLLVGC----------- 204
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
E+ R E S K+G+G HTT ++ L GGGY+ DTPG + +L +T+
Sbjct: 205 -----------EELRTAETSGKTGKGVHTTTSSAMFQLPGGGYVIDTPGIREFNLAGITR 253
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDE 306
++L + E + +C+F++C H EPGC V ERY+ Y LLD
Sbjct: 254 ENLRFYYTEFLRYMP-----ECTFSSCSHTVEPGCAVIAAVESGSIARERYESYLALLDS 308
Query: 307 I 307
+
Sbjct: 309 L 309
>gi|282850872|ref|ZP_06260246.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
224-1]
gi|420147425|ref|ZP_14654701.1| Putative ribosome biogenesis GTPase RsgA [Lactobacillus gasseri
CECT 5714]
gi|282557824|gb|EFB63412.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
224-1]
gi|398401426|gb|EJN54928.1| Putative ribosome biogenesis GTPase RsgA [Lactobacillus gasseri
CECT 5714]
Length = 297
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSKVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F +
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELGNYFYD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+K+ KC F C H+ EPGC VK E RY Y ++ EI
Sbjct: 240 LKDA-----SVKCKFRRCQHIKEPGCEVKKLIEEGKIAKSRYDSYLKIRQEI 286
>gi|261414462|ref|YP_003248145.1| ribosome small subunit-dependent GTPase A [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261370918|gb|ACX73663.1| ribosome small subunit-dependent GTPase A [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 410
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 54/293 (18%)
Query: 41 VGDKVVVGSIDWVDRRG--------MIENVFQRSTEILDPP-----------VANVDHLL 81
VGD+V++G ++ D G + V R +E+ P AN+D ++
Sbjct: 141 VGDRVLLGLVNDADDEGDGVGSQKYCVVRVLPRKSELKRPGPRDSFYKQQTLAANIDQVV 200
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV--DEEVLNTWKSRLHTWGYEP 139
++ S+ QP+ + RFL+ A +P L L K++L+ E L++ +
Sbjct: 201 IVASVTQPEFNYGFMDRFLLAANLNDLPFVLVLTKMDLLPNGEADLSSDIRDFMKIVDKV 260
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+ SV+S GL+ L L +++V G SGVGKS+LIN L PHA
Sbjct: 261 IPVSVKSGDGLEVLRNELVGKSSVFSGMSGVGKSTLINEL--VPHA-------------- 304
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ R G+V + G+G+HTT SL GGGY+ DTPG L+ + ++LA+
Sbjct: 305 ------ELRTGDVRERDGKGRHTTTSSSLFDFPGGGYVIDTPGIRSIGLMDMEPETLAKI 358
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FP E ++ C F+NC HL EPGC V+ E RY Y ++L+
Sbjct: 359 FPGFFE----DDLFTCKFSNCKHLKEPGCAVRAAVESGKISEARYASYVRILN 407
>gi|160933499|ref|ZP_02080887.1| hypothetical protein CLOLEP_02345 [Clostridium leptum DSM 753]
gi|156867376|gb|EDO60748.1| ribosome small subunit-dependent GTPase A [Clostridium leptum DSM
753]
Length = 317
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 139/302 (46%), Gaps = 44/302 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ ++ L GD+VV+ + D I+ + R +++ PPVAN+D L++ S
Sbjct: 49 CKARGIFRRHSQKPLAGDQVVI--VPAEDGTATIDEILPRKNQLVRPPVANIDQLIITAS 106
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSV 144
P P + + A I + + K +L D W ++ + S
Sbjct: 107 TCDPVPNPLIIDKMTALAVHKNIQPVVVITKSDLDD----GAWLKGIYDLAQIRCVLFSA 162
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
S G + + LR++ + G SGVGKSSL+N L G
Sbjct: 163 VSGEGAGEMKELLRNRISAFSGNSGVGKSSLLNRL-------------------YGGLQL 203
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK---VTKQSLAQTFP 261
E G++S K GRG+HTTR V L L GGGY+ADTPGF+ + + + K+ L Q FP
Sbjct: 204 E---TGDISQKLGRGRHTTRQVELFKLEGGGYVADTPGFSTVDVERYELIRKEELPQCFP 260
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIRIREEFQ 314
E + L +C F +C H+ E GC V K R+ Y + E++ +E++
Sbjct: 261 EFEPYLN-----QCKFTSCAHICEKGCAVLKAVEEGKISKSRHGSYCAMYQEVKDVKEWE 315
Query: 315 LR 316
L+
Sbjct: 316 LK 317
>gi|149910188|ref|ZP_01898834.1| ribosome-associated GTPase [Moritella sp. PE36]
gi|149806774|gb|EDM66738.1| ribosome-associated GTPase [Moritella sp. PE36]
Length = 350
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 148/314 (47%), Gaps = 52/314 (16%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI-- 69
+D D+ G+ C +R + + + GD+VV +G+ G+IE V +R T +
Sbjct: 56 ADVEDENGIIHRCNLRRSIVSL----VTGDRVVWRLGNEQLQGISGIIEAVHERRTVLTR 111
Query: 70 ------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
+ P AN+D ++++ S+ P+ + R++V AE I + LNK++L+
Sbjct: 112 PDFYDGIKPIAANIDQIVIVSSV-VPEFSTNIIDRYIVAAEDVKIRPVILLNKIDLLSPN 170
Query: 124 VLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
L T +L T+ GYE S GL L L+D TT+ VG SGVGKSSL+NAL
Sbjct: 171 ELFTINQQLQTYRDIGYEVWQVSSTEGKGLGELQGLLKDNTTIFVGQSGVGKSSLVNALM 230
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
H +VG+VS KSG G HTT L GG L D+
Sbjct: 231 PELHI----------------------QVGDVSVKSGLGTHTTTTARLYHFPSGGDLIDS 268
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC-----VVKGDWE 295
PG + SL + + +A F E ++ L +C F +C H +PGC V KG +
Sbjct: 269 PGVREFSLWHMKPEEIANGFIEFRDFL-----GECRFRDCKHKNDPGCALQDAVAKGKIK 323
Query: 296 --RYQYYFQLLDEI 307
R+ Y ++L+ +
Sbjct: 324 KVRFDNYVRILETM 337
>gi|268592888|ref|ZP_06127109.1| ribosome small subunit-dependent GTPase A [Providencia rettgeri DSM
1131]
gi|291311677|gb|EFE52130.1| ribosome small subunit-dependent GTPase A [Providencia rettgeri DSM
1131]
Length = 350
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 152/313 (48%), Gaps = 53/313 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
+ R L++ ++ GD VV + + + G++E V +R + + L P
Sbjct: 60 IQRCNLRRTISSLVTGDNVVWRPALNTQSDIKVNGIVEAVHERRSVLTRPDYYDGLKPIA 119
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+TGI + LNKV+L+D+E W S L T
Sbjct: 120 ANIDQIVVVSAI-LPELSLNIIDRYLVACETTGIKPVIVLNKVDLLDDEN-REWVSDLMT 177
Query: 135 W----GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ L S + G+++L L + +V VG SGVGKSSL+NAL PH +A
Sbjct: 178 IYRDIGYQVLEVSSHTNEGMEALTNALAGKVSVFVGQSGVGKSSLLNALL--PHNEEA-- 233
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
IL V EVS SG G+HTT L GG + D+PG + L
Sbjct: 234 -------IL---------VNEVSDNSGLGQHTTTTARLYHFPLGGDVIDSPGVREFGLWH 277
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC----------VVKGDWERYQYY 300
+T + + + F E K+ L C F +C HL +PGC + + +E Y
Sbjct: 278 LTTEQVTKGFVEFKDYL-----GGCKFRDCKHLDDPGCLLREAVEANKIAESRFENYHRI 332
Query: 301 FQLLDEIRIREEF 313
+ +++I+ R F
Sbjct: 333 LESMEQIKPRGNF 345
>gi|417915996|ref|ZP_12559589.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. SK95]
gi|342831619|gb|EGU65933.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. SK95]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILTIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPACAVKLAVEEGIIATFRFDNYLQFLSEIENRRE 281
>gi|379726845|ref|YP_005319030.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius DAT561]
gi|376317748|dbj|BAL61535.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius DAT561]
Length = 262
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 42/280 (15%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV+ S + D G I ++ R E+ P VANV+ +++ SM +P L RF
Sbjct: 1 MVGDKVIFESKNLTD--GYILDILPRFNELERPTVANVNQGVIVTSMVKPLFSYNLLDRF 58
Query: 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC-SVESKL-GLDSLL 154
L+ E+ I + L K++L++++ +++ + + GY + ++E K G++ L
Sbjct: 59 LIILENKKIKPIIYLTKIDLLNDDGSSDVHSIQKQYEQIGYPVILGNNLEMKYKGIEVLK 118
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
Q ++ TV +G SG GKS+L+N + S+ + A E+S
Sbjct: 119 QYFPEKLTVFMGQSGSGKSTLLNNISSNLTLATA----------------------EISE 156
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274
GRGKHTTRH+ L+P+ G +ADTPGF+ + K+ L + FP E +KA
Sbjct: 157 VLGRGKHTTRHIELIPID-QGLVADTPGFSSIDFQTIEKERLPKLFP---EFVKA--APF 210
Query: 275 CSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
C F C+H EPGC VK RY Y Q L+EI
Sbjct: 211 CKFRECMHANEPGCEVKHRVKEGMIAQSRYDNYLQFLEEI 250
>gi|282880954|ref|ZP_06289645.1| ribosome small subunit-dependent GTPase A [Prevotella timonensis
CRIS 5C-B1]
gi|281305177|gb|EFA97246.1| ribosome small subunit-dependent GTPase A [Prevotella timonensis
CRIS 5C-B1]
Length = 310
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 117/253 (46%), Gaps = 40/253 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
N+D LL ++ P+ + RFL AE+ IP+ L NK +L++EE + + ++
Sbjct: 85 ATNLDQAFLLVTIKYPETSTIFIDRFLAGAEAYRIPVVLVFNKTDLLNEEERHYQQMMMN 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY + S E G++ + L + T++ G SGVGKS+LIN L PHA
Sbjct: 145 LYETIGYHCVEISAEKGQGMEVIDALLAQKVTLLSGNSGVGKSTLINVL--IPHA----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+QR E+S G G HTT ++ L GGY+ DTPG
Sbjct: 198 ---------------EQRTAEISDAHGTGIHTTTFSEMIALPHGGYVIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ + L F EI K C FNNC H EPGC V+ E RYQ Y +
Sbjct: 243 IEPEELTSYFKEIFAFSK-----DCKFNNCTHTHEPGCAVRTAVENHYISESRYQSYLSM 297
Query: 304 LDEIRIREEFQLR 316
LD+ +EE + R
Sbjct: 298 LDD---KEENKYR 307
>gi|28895108|ref|NP_801458.1| ribosome-associated GTPase [Streptococcus pyogenes SSI-1]
gi|161485754|ref|NP_663995.2| ribosome-associated GTPase [Streptococcus pyogenes MGAS315]
gi|342179304|sp|P0DF42.1|RSGA_STRP3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|342179305|sp|P0DF43.1|RSGA_STRPQ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|28810353|dbj|BAC63291.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 290
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I ++ R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIYPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|423220758|ref|ZP_17207252.1| ribosome small subunit-dependent GTPase A [Bacteroides caccae
CL03T12C61]
gi|392622804|gb|EIY16919.1| ribosome small subunit-dependent GTPase A [Bacteroides caccae
CL03T12C61]
Length = 310
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 40/254 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ L NKV++ +EE L+ + ++
Sbjct: 85 AANLDQCMLVVTVNYPETSTIFIDRFLASAEAYRVPVKLVFNKVDVYNEEELHYLDALIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S ++ G+D + + L + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKVSAKNGDGIDEIKKALEGKITLFSGHSGVGKSTLINAILPGI------- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ + GE+ST +G HTT + P+ G GY+ DTPG
Sbjct: 198 ---------------ETKTGEISTYHNKGMHTTTFSEMFPVDGDGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ + FPEI ++ A+C + NC H EPGC V+ E RY Y +
Sbjct: 243 MEEEEIGHYFPEIFKV-----SAECKYGNCTHRHEPGCAVRKAVEEHLISESRYASYLNM 297
Query: 304 LDEIRIREEFQLRT 317
L++ +EE + R
Sbjct: 298 LED---KEEGKYRA 308
>gi|387121960|ref|YP_006287843.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415759031|ref|ZP_11481681.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416032290|ref|ZP_11572771.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416065044|ref|ZP_11581755.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416070140|ref|ZP_11583565.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429732660|ref|ZP_19267255.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995424|gb|EGY36606.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|347999212|gb|EGY40063.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348000220|gb|EGY41012.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655147|gb|EGY70624.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876452|gb|AFI88011.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429155579|gb|EKX98245.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans Y4]
Length = 346
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 147/314 (46%), Gaps = 52/314 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AVL--PHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F++C HL +PGC ++ E
Sbjct: 263 IDSPGIREFGLWHLKDEQITRGYREFQTVL-----GTCKFHDCKHLNDPGCALRQAVEEG 317
Query: 296 -----RYQYYFQLL 304
RY+ Y +LL
Sbjct: 318 RISAIRYENYHRLL 331
>gi|417847209|ref|ZP_12493178.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1073]
gi|339457238|gb|EGP69816.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1073]
Length = 292
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVVATFRFDNYLQFLSEIENRRE 281
>gi|24378848|ref|NP_720803.1| GTPase RsgA [Streptococcus mutans UA159]
gi|397649084|ref|YP_006489611.1| GTPase RsgA [Streptococcus mutans GS-5]
gi|449877014|ref|ZP_21783093.1| ribosome-associated GTPase [Streptococcus mutans S1B]
gi|449887768|ref|ZP_21787020.1| ribosome-associated GTPase [Streptococcus mutans SA41]
gi|449898552|ref|ZP_21790668.1| ribosome-associated GTPase [Streptococcus mutans R221]
gi|449915749|ref|ZP_21796465.1| ribosome-associated GTPase [Streptococcus mutans 15JP3]
gi|449930374|ref|ZP_21802051.1| ribosome-associated GTPase [Streptococcus mutans 3SN1]
gi|449941034|ref|ZP_21805347.1| ribosome-associated GTPase [Streptococcus mutans 11A1]
gi|449974427|ref|ZP_21815289.1| ribosome-associated GTPase [Streptococcus mutans 11VS1]
gi|449984341|ref|ZP_21818995.1| ribosome-associated GTPase [Streptococcus mutans NFSM2]
gi|449997091|ref|ZP_21823824.1| ribosome-associated GTPase [Streptococcus mutans A9]
gi|450010439|ref|ZP_21828677.1| ribosome-associated GTPase [Streptococcus mutans A19]
gi|450024504|ref|ZP_21831264.1| ribosome-associated GTPase [Streptococcus mutans U138]
gi|450078137|ref|ZP_21850842.1| ribosome-associated GTPase [Streptococcus mutans N3209]
gi|450081221|ref|ZP_21851607.1| ribosome-associated GTPase [Streptococcus mutans N66]
gi|450115398|ref|ZP_21863907.1| ribosome-associated GTPase [Streptococcus mutans ST1]
gi|38257597|sp|Q8DVW1.1|RSGA_STRMU RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|24376725|gb|AAN58109.1|AE014882_12 conserved hypothetical protein [Streptococcus mutans UA159]
gi|392602653|gb|AFM80817.1| GTPase RsgA [Streptococcus mutans GS-5]
gi|449152543|gb|EMB56248.1| ribosome-associated GTPase [Streptococcus mutans 11A1]
gi|449156075|gb|EMB59559.1| ribosome-associated GTPase [Streptococcus mutans 15JP3]
gi|449163625|gb|EMB66724.1| ribosome-associated GTPase [Streptococcus mutans 3SN1]
gi|449178370|gb|EMB80636.1| ribosome-associated GTPase [Streptococcus mutans 11VS1]
gi|449180337|gb|EMB82500.1| ribosome-associated GTPase [Streptococcus mutans NFSM2]
gi|449182419|gb|EMB84444.1| ribosome-associated GTPase [Streptococcus mutans A9]
gi|449190161|gb|EMB91754.1| ribosome-associated GTPase [Streptococcus mutans A19]
gi|449191943|gb|EMB93391.1| ribosome-associated GTPase [Streptococcus mutans U138]
gi|449210359|gb|EMC10823.1| ribosome-associated GTPase [Streptococcus mutans N3209]
gi|449215459|gb|EMC15648.1| ribosome-associated GTPase [Streptococcus mutans N66]
gi|449228070|gb|EMC27457.1| ribosome-associated GTPase [Streptococcus mutans ST1]
gi|449251424|gb|EMC49436.1| ribosome-associated GTPase [Streptococcus mutans S1B]
gi|449252156|gb|EMC50143.1| ribosome-associated GTPase [Streptococcus mutans SA41]
gi|449259588|gb|EMC57112.1| ribosome-associated GTPase [Streptococcus mutans R221]
Length = 290
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVK------GDWE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKLALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|219669860|ref|YP_002460295.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DCB-2]
gi|219540120|gb|ACL21859.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DCB-2]
Length = 296
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILVLNKIDLGSRGESTAENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEI 307
F E +++ +C F +C H EP C VK RY++Y Q L+E+
Sbjct: 240 YFWEFQDV------GECRFADCQHHKEPDCAVKAAVASGRIQPSRYEHYCQFLEEV 289
>gi|418963502|ref|ZP_13515339.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
subsp. whileyi CCUG 39159]
gi|383343098|gb|EID21293.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
subsp. whileyi CCUG 39159]
Length = 292
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 134/293 (45%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIADRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D++ L+ + GY ++
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIHPIIYISKLDLLEDDKELDAFLDVYQAIGY-------DT 136
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 137 AKAVTELLPFLTSKKTVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L Q FPEI E+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEDLNQAFPEIAEV 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+ C F C H EP C VK E R++ Y Q L EI R E
Sbjct: 234 SR-----DCKFRTCTHTHEPNCAVKPAVENGTIADFRFEDYLQFLSEIEHRRE 281
>gi|295693189|ref|YP_003601799.1| ribosome biogenesis GTPase rsga [Lactobacillus crispatus ST1]
gi|295031295|emb|CBL50774.1| Ribosome biogenesis GTPase rsgA [Lactobacillus crispatus ST1]
Length = 296
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 138/292 (47%), Gaps = 48/292 (16%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 30 RGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVISA 85
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCS 143
+P L RFL + +T+ L+K +L+ E LNT K L + GY P+F
Sbjct: 86 VEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGY-PVFTD 144
Query: 144 V-ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 145 YHEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA-------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 ---NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVE 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
K+ C F C HL EPGC VK E RY+ Y + EI
Sbjct: 240 FKK-----ASIHCKFRGCQHLQEPGCEVKKLLEAGEILASRYEDYLAMRTEI 286
>gi|385825623|ref|YP_005861965.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837318|ref|ZP_12483557.1| ribosome small subunit-stimulated GTPase EngC [Lactobacillus
johnsonii pf01]
gi|329667067|gb|AEB93015.1| hypothetical protein LJP_0684 [Lactobacillus johnsonii DPC 6026]
gi|338762513|gb|EGP13781.1| ribosome small subunit-stimulated GTPase EngC [Lactobacillus
johnsonii pf01]
Length = 297
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 138/294 (46%), Gaps = 50/294 (17%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDDQGMNYLIEILPRINEIGRPAVANVSRVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L ++ L + GY P+F
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKSDITSSERLKDIQTELEYYQRIGY-PVFE 143
Query: 143 SVESKLGLDSLLQRL--RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
E L++ L ++ +DQ + G SG GKS+L+N L S
Sbjct: 144 DAEK---LENELPKMIDKDQIWTLAGQSGAGKSTLLNKLESEAK---------------- 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
Q G +ST RGKHTTR V+L G G++ADTPGF+ L K+ L F
Sbjct: 185 ------QATGAISTALNRGKHTTRQVTLFKY-GSGFIADTPGFSAIDLFKIKVDDLRNYF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
++KE A C F C H+ EPGC VK E RY+ Y ++ EI
Sbjct: 238 YDLKEA-----SANCKFRGCQHIKEPGCEVKKLVEEGKIARSRYESYLKIRQEI 286
>gi|157364705|ref|YP_001471472.1| ribosome small subunit-dependent GTPase A [Thermotoga lettingae
TMO]
gi|157315309|gb|ABV34408.1| ribosome small subunit-dependent GTPase A [Thermotoga lettingae
TMO]
Length = 279
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 146/298 (48%), Gaps = 40/298 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
KT ++ C +R K + +VGD V V G++E+V +R E+L P VAN+D
Sbjct: 11 KTKEKIRCHLRGRFKLQGLKPIVGDIV---EYVRVQDAGVVESVLKRKNELLKPRVANID 67
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-Y 137
++ ++++ +P++ L + LV E + + L LNK++L+ EE + T+
Sbjct: 68 QVVCVYTIKKPEVSLLILDKLLVLIEEARLNVLLILNKIDLLTEEDKEKKDHFIKTYSKI 127
Query: 138 EPLFC-SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
PL C S ++ GL+ L + +D+ +V G SGVGKSSL+N++ P
Sbjct: 128 YPLLCTSTKTGEGLEKLKEYFKDRLSVFAGLSGVGKSSLLNSI--CPGI----------- 174
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ R E+S ++ RGKHTT L+ L GG++ DTPGF+ + V +L
Sbjct: 175 ---------NLRTQEISERTKRGKHTTTAAELIHLPFGGHVVDTPGFSLIDISHVDPDNL 225
Query: 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E C F +C H+ EPGC +K E RY+ Y + E+
Sbjct: 226 KFYFPEFV------ENGNCLFKDCTHISEPGCRIKQMVEEGKISTSRYESYVTMYKEV 277
>gi|116629422|ref|YP_814594.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|311110929|ref|ZP_07712326.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
MV-22]
gi|122273640|sp|Q044G6.1|RSGA_LACGA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|116095004|gb|ABJ60156.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323]
gi|311066083|gb|EFQ46423.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
MV-22]
Length = 297
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 46/292 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSKVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F +
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELENYFYD 239
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+K+ KC F C H+ EPGC VK E RY Y ++ EI
Sbjct: 240 LKDA-----SVKCKFRRCQHIKEPGCEVKKLIEEGKIAKSRYDSYLKIRQEI 286
>gi|296327589|ref|ZP_06870135.1| ribosome-associated GTP-binding protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296155415|gb|EFG96186.1| ribosome-associated GTP-binding protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 288
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 140/293 (47%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 20 CKLRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFKRDNLLIRPIVANVDYLAIQ 73
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A I + +NK++ + EE L K S L
Sbjct: 74 FAAKHPNIDFERINLLLLTAFYYKIKPIVIVNKIDYLTEEELVELKEKLSFLERISVPMF 133
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E IL
Sbjct: 134 LISCYQNIGLEEVENFLKDKITVIGGPSGVGKSSFINFLQS--------------ERIL- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 179 -------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 231
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLD 305
FPE + C F NC H+ EPGC VK ERY +Y + L+
Sbjct: 232 FPEFLNI------DSCKFLNCSHIHEPGCNVKKQVEENKISKERYDFYKKTLE 278
>gi|339627432|ref|YP_004719075.1| GTPase [Sulfobacillus acidophilus TPY]
gi|379008192|ref|YP_005257643.1| ribosome biogenesis GTPase RsgA [Sulfobacillus acidophilus DSM
10332]
gi|339285221|gb|AEJ39332.1| GTPase [Sulfobacillus acidophilus TPY]
gi|361054454|gb|AEW05971.1| ribosome biogenesis GTPase RsgA [Sulfobacillus acidophilus DSM
10332]
Length = 284
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 42/294 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV LC +R +K+ RVLVGD V D G I +++ R ++L PP+ANV+ L
Sbjct: 20 GVSYLCYLRGRIKRDIGRVLVGDWVDFEPTD--AGEGWIRHIYPRKNQLLRPPMANVEGL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++FS+ QPK L + LV A+ TG+ + + K++L D +V+ + + GY
Sbjct: 78 FVVFSVSQPKGSLELLDKRLVLADLTGLAAEIIITKIDLADRDVVESLAAVYRRAGYRVW 137
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + GL++ R+ V G SGVGKS+L++ R P
Sbjct: 138 PVSGHTGEGLEAWRTTPREGIWVFTGESGVGKSTLLH--RVLP----------------- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
E++ V + ++ GRG+ TTR V L PL G +LAD+PG+ + + + F
Sbjct: 179 ----EEEVVVQGLSRIGRGQQTTRTVRLYPL-GSFWLADSPGYTALTTTVTDPARIREAF 233
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGC-----VVKGD---WERYQYYFQLLDE 306
E + + C F++C H EP C V +GD W RY +Y LL E
Sbjct: 234 GEFRGI-------TCRFHDCWHRSEPDCGVRDKVAQGDIAAW-RYAHYLALLQE 279
>gi|127511492|ref|YP_001092689.1| ribosome-associated GTPase [Shewanella loihica PV-4]
gi|126636787|gb|ABO22430.1| ribosome small subunit-dependent GTPase A [Shewanella loihica PV-4]
Length = 337
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 145/301 (48%), Gaps = 48/301 (15%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPPV--------AN 76
+VR +++ + ++ GDKV++ S G++E V R + + P + AN
Sbjct: 51 LVRCNIRRNIQSLVTGDKVIMRQASETTATIAGVVEAVHPRHSSLSRPDLYDGIKIIAAN 110
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLH 133
+D +L++ S+ P + R+LV AE TGI + LNK++L+ +E + R
Sbjct: 111 IDQILIVSSV-VPSFTTQIIDRYLVAAEDTGIAPVIILNKIDLLSDEEAPAVEAALERYQ 169
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ S +S G++++ L+D+ +V VG SGVGKSSLINAL P A
Sbjct: 170 AIGYQVYRVSSKSGEGVEAIKTLLKDKVSVFVGQSGVGKSSLINALL--PEA-------- 219
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ G+VS SG G+HTT LL GG L D+PG + +L +
Sbjct: 220 ------------ELITGDVSETSGLGQHTTTTAKLLHFPSGGDLVDSPGVREFALWHLPA 267
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ + F E ++ L C F +C H +PGC + +E RYQ Y +++D
Sbjct: 268 ERVGWCFVEFRDYL-----GTCKFRDCKHKNDPGCAITQAFEEGKIAQDRYQNYHRIIDS 322
Query: 307 I 307
+
Sbjct: 323 L 323
>gi|325107214|ref|YP_004268282.1| ribosome biogenesis GTPase RsgA [Planctomyces brasiliensis DSM
5305]
gi|324967482|gb|ADY58260.1| ribosome biogenesis GTPase RsgA [Planctomyces brasiliensis DSM
5305]
Length = 375
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 142/301 (47%), Gaps = 49/301 (16%)
Query: 25 LCVVRALLKKI----KRRVLVGDKVVV-------GSIDWVD-RRGMIENVFQRSTEILDP 72
+C VR +L+ + + V+ GD+V+ G I V+ R G + RS +++
Sbjct: 102 VCAVRQILRTLSQNNRNAVVAGDRVLFEPAPGLQGMIHRVEPRTGTLGRGSGRSQQLI-- 159
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV+ ++ + P +P + RFL+ E G+ + +NK +LVD + +
Sbjct: 160 -VANVELAAIVIAAVSPHFKPSLVDRFLISCEKGGVKPLICINKADLVDPREMQPVIGQY 218
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ S E+ G+D+L R+ + TV G SGVGK+SL+N++
Sbjct: 219 ANLGYDVFLISAETGAGIDALRARILGRQTVFSGQSGVGKTSLLNSI------------- 265
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+P LG K VS SG+G+HTTR L L GG++ DTPG Q L V
Sbjct: 266 ---QPGLGLK------TSGVSDDSGKGRHTTRTAVLKRLENGGWVVDTPGIRQLRLWDVI 316
Query: 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305
++ + F E + ++ C F +CLH E GC +K RY+ Y ++L
Sbjct: 317 REEVEGFFIEFRPFVRY-----CRFPDCLHDHEIGCGIKAAVAAGMISTARYESYLKILS 371
Query: 306 E 306
+
Sbjct: 372 D 372
>gi|450039714|ref|ZP_21836342.1| ribosome-associated GTPase [Streptococcus mutans T4]
gi|449200056|gb|EMC01103.1| ribosome-associated GTPase [Streptococcus mutans T4]
Length = 290
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPEFLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVK------GDWE-RYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKLALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|325911762|ref|ZP_08174169.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
143-D]
gi|325476528|gb|EGC79687.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
143-D]
Length = 297
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREE 312
F EIK K +C F C H+ EP C VK RY Y I+IREE
Sbjct: 238 FYEIKHFSK-----ECKFRQCQHINEPKCAVKVALNNHDILDSRYNSY------IKIREE 286
Query: 313 FQL 315
L
Sbjct: 287 IAL 289
>gi|113461242|ref|YP_719311.1| ribosome-associated GTPase [Haemophilus somnus 129PT]
gi|122945343|sp|Q0I447.1|RSGA_HAES1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|112823285|gb|ABI25374.1| possible GTPase [Haemophilus somnus 129PT]
Length = 350
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 48/301 (15%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
+VR L++ + V+VGD+VV G RG+IE V R +I+ P AN
Sbjct: 65 IVRCNLRRTLKSVVVGDRVVWRKGKEQLQGVRGVIEAVQPRHNQIVRPDYYDGLKSIAAN 124
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ S P L + R+LV ES+ IP + +NK +L+ E +L +
Sbjct: 125 IDRIIIV-SAVLPNLSLNIIDRYLVVCESSNIPAVIVVNKADLLSSEARTEVSLQLEIYQ 183
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GYE L S +S +D L L + T++ VG SGVGKSSLIN + +A
Sbjct: 184 KIGYETLLISAKSGENMDKLTALLSEGTSIFVGQSGVGKSSLINYILPEVNA-------- 235
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ G++S SG G+HTT L LS GG L D+PG + L + +
Sbjct: 236 --------------QTGKLSQVSGLGQHTTTSSRLYHLSQGGNLIDSPGIREFGLWHLDR 281
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDE 306
+ + + E + L C F +C HL +PGC + K D R++ Y +L+
Sbjct: 282 EQITNGYREFQYFL-----GTCKFRDCKHLHDPGCAIQLAVKEGKIDPLRFENYHRLITS 336
Query: 307 I 307
+
Sbjct: 337 L 337
>gi|372268156|ref|ZP_09504204.1| GTPase RsgA [Alteromonas sp. S89]
Length = 343
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 49/281 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILDPP--------VA 75
C VRA + + + GDKV + + G++ R +E+ P A
Sbjct: 71 CHVRANIDTL----VTGDKVAWNPATGEATGGLGVVGARLPRHSELQRPDRYGDMKTVAA 126
Query: 76 NVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
N+D +L++ + P EPFA + R+LV AE+TGI L LNK++L+D+ + L
Sbjct: 127 NIDRILIVIA---PYPEPFANAIDRYLVAAETTGIQPLLLLNKIDLIDDSNREHLEDLLQ 183
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY L S ++ GLD LL+ L + T+V VG SGVGKSSLIN L S
Sbjct: 184 PYPDLGYPVLKLSTKTGEGLDRLLETLAEGTSVFVGQSGVGKSSLINGLLPSA------- 236
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
D R G +S +G+G HTT L L GG L D+PG + +
Sbjct: 237 ---------------DARTGALSQATGKGTHTTTAAELFHLPTGGDLIDSPGIREFGIWH 281
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
+++Q+L + + E + + C F +C H EPGC ++
Sbjct: 282 MSEQALLEGYVEFRPFI-----GHCRFRDCRHQSEPGCAIQ 317
>gi|421489471|ref|ZP_15936851.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK304]
gi|400365708|gb|EJP18758.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK304]
Length = 292
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGKLDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEELNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|422007132|ref|ZP_16354118.1| GTPase RsgA [Providencia rettgeri Dmel1]
gi|414097022|gb|EKT58677.1| GTPase RsgA [Providencia rettgeri Dmel1]
Length = 350
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 53/316 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
+ R L++ ++ GD VV + + + G++E V +R + + L P
Sbjct: 60 IQRCNLRRTISSLVTGDNVVWRPALNTQSDIKVNGIVEAVHERRSVLTRPDYYDGLKPIA 119
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+TGI + LNKV+L+D+E W S L T
Sbjct: 120 ANIDQIVVVSAI-LPELSLNIIDRYLVACETTGIKPVIVLNKVDLLDDEN-REWVSDLMT 177
Query: 135 W----GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ L S + G+++L L + +V VG SGVGKSSL+NAL PH
Sbjct: 178 IYSDIGYQVLEVSSHTNEGMEALTNALAGKVSVFVGQSGVGKSSLLNALL--PHNE---- 231
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
E IL V EVS SG G+HTT L GG + D+PG + L
Sbjct: 232 -----ETIL---------VNEVSDNSGLGQHTTTTARLYHFPLGGDVIDSPGVREFGLWH 277
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC----------VVKGDWERYQYY 300
+T + + + F E K+ L C F +C HL +PGC + + +E Y
Sbjct: 278 LTTEQVTKGFVEFKDYL-----GGCKFRDCKHLDDPGCLLREAVEANKIAESRFENYHRI 332
Query: 301 FQLLDEIRIREEFQLR 316
+ +++I+ R F +
Sbjct: 333 LESMEQIKPRGNFTAK 348
>gi|291543916|emb|CBL17025.1| ribosome small subunit-dependent GTPase A [Ruminococcus
champanellensis 18P13]
Length = 302
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 143/303 (47%), Gaps = 55/303 (18%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + + + +VGD+V V + G+I+ + R ++ PP+AN+D LL + SM
Sbjct: 39 ARGIFRNRGQSPMVGDRVQV-------KNGVIDQLLPRKNNLIRPPLANLDQLLFVVSMY 91
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
+P L +F+ AE I L + K +L D L ++ P++ VE
Sbjct: 92 KPAPNLLLLDKFIAIAEYKQITPILVVTKADLEDPAPL----VEIYQKAGIPVYV-VEYA 146
Query: 148 L--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D++ LR + + G SG GKS+L+NA+ +S
Sbjct: 147 IPRTVDAVAACLRGKVSAFTGNSGAGKSTLLNAIDASLQLE------------------- 187
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF-----NQPSLLKVTKQSLAQTF 260
G +S K GRG+HTTRH L P+ GGGY+ADTPGF NQ +++ K+ LA F
Sbjct: 188 ---TGSISEKLGRGRHTTRHAQLYPVQGGGYVADTPGFSTFETNQYDIIR--KEELAGCF 242
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
E L +C F +C H E C ++ E RY+ Y ++ +E + +E+
Sbjct: 243 REFAPYL-----GQCRFQDCCHTAERNCALRQAVEDGEIPRSRYESYCRMFEEAKGLKEW 297
Query: 314 QLR 316
+L+
Sbjct: 298 ELK 300
>gi|42519408|ref|NP_965338.1| hypothetical protein LJ1536 [Lactobacillus johnsonii NCC 533]
gi|56749075|sp|Q74IN3.1|RSGA_LACJO RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|41583696|gb|AAS09304.1| hypothetical protein LJ_1536 [Lactobacillus johnsonii NCC 533]
Length = 297
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 138/294 (46%), Gaps = 50/294 (17%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDDQGMNYLIEILPRINEIGRPAVANVSRVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L ++ L + GY P+F
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKSDITSSERLKDIQTELEYYQRIGY-PVFE 143
Query: 143 SVESKLGLDSLLQRL--RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
E L++ L ++ +DQ + G SG GKS+L+N L S
Sbjct: 144 DAEK---LENELPKMIDKDQIWTLAGQSGAGKSTLLNQLESEAK---------------- 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
Q G +ST RGKHTTR V+L G G++ADTPGF+ L K+ L F
Sbjct: 185 ------QVTGAISTALNRGKHTTRQVTLFKY-GSGFIADTPGFSAIDLFKIKVDDLRNYF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
++KE A C F C H+ EPGC VK E RY+ Y ++ EI
Sbjct: 238 YDLKEA-----SANCKFRGCQHIKEPGCEVKKLVEEGKIARSRYESYLKIRQEI 286
>gi|261345224|ref|ZP_05972868.1| ribosome small subunit-dependent GTPase A [Providencia rustigianii
DSM 4541]
gi|282566920|gb|EFB72455.1| ribosome small subunit-dependent GTPase A [Providencia rustigianii
DSM 4541]
Length = 350
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 50/304 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
V R L++ ++ GDKVV + + + G++E V +R + + L P
Sbjct: 60 VQRCNLRRTISSLVTGDKVVWRPAINTQSDIKINGIVEAVHERHSVLTRPDYYDGLKPIA 119
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+TGI + LNKV+L+D+E W S L T
Sbjct: 120 ANIDQIVVVSAI-LPELSLNIIDRYLVACETTGIQPVIVLNKVDLLDDEN-REWVSDLMT 177
Query: 135 W----GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ L S + G+++L L + +V VG SGVGKSSL+N L PH +
Sbjct: 178 IYTDIGYQVLEVSSHTSEGMEALTNALAGKVSVFVGQSGVGKSSLLNTLL--PHNA---- 231
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
E IL V +VS SG G+HTT L GG + D+PG + L
Sbjct: 232 -----ESIL---------VNDVSDGSGLGQHTTTASRLYHFPQGGDVIDSPGVREFGLWH 277
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+T + + + F E K+ L C F +C HL +PGC+++ E R++ Y ++
Sbjct: 278 LTTEQVTKGFVEFKDYL-----GGCKFRDCKHLDDPGCLLREAMEEGRIAESRFENYHRI 332
Query: 304 LDEI 307
L+ +
Sbjct: 333 LESM 336
>gi|81428308|ref|YP_395308.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|123564451|sp|Q38XT2.1|RSGA_LACSS RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|78609950|emb|CAI54997.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 299
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 42/293 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K LVGD V S + G I + R E++ PPVAN+D +++ S
Sbjct: 27 ARGNFRKRKITPLVGDFVEFESESQTES-GYILEILDRKNEMIRPPVANIDQAVVIVSAV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC-- 142
+P L RFL+ ES I + L K +++ +E K L + GY P F
Sbjct: 86 EPDFSLNLLDRFLIYLESLNIQGLVYLTKTDMISDEKYQEIKQYLDYYEKVGY-PTFAPR 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + + ++ D+TTV G +G GKS+L+N + + + A
Sbjct: 145 TAFTPEIIQAIEDTFPDKTTVFTGQTGAGKSTLLNHIDPKLNLATA-------------- 190
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S RGKHTTRH+ L+PL+ G + DTPGF+ +L VT ++L +PE
Sbjct: 191 --------EISQSLNRGKHTTRHIELIPLN-DGLVGDTPGFSSLGILNVTSETLVSRYPE 241
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
+E+ + C F C H+ EP C VK + RY Y Q E++
Sbjct: 242 FREIGQ-----DCKFRTCQHVMEPKCAVKAAVDAGEIMQSRYTNYLQFRAELK 289
>gi|331701494|ref|YP_004398453.1| ribosome biogenesis GTPase RsgA [Lactobacillus buchneri NRRL
B-30929]
gi|329128837|gb|AEB73390.1| ribosome biogenesis GTPase RsgA [Lactobacillus buchneri NRRL
B-30929]
Length = 296
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 136/289 (47%), Gaps = 43/289 (14%)
Query: 36 KRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KR++ LVGD V D +G I + R ++ PP+AN+D ++ + QP+
Sbjct: 33 KRQITPLVGDDVEFQVEDG--DKGYILKMLPRKNSLVRPPIANIDQAIVTTATTQPEFSS 90
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP----LFCSVESKLG 149
L R L+ E I + K +L+ E+ LN +K + P L + +
Sbjct: 91 NLLDRQLIALEIANIKPIIYFTKTDLLSEKQLNYFKDLAVAYANIPYDVILPEAAFDENS 150
Query: 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
L+ L Q + VI+G +G GKS+L+N L +P A
Sbjct: 151 LNHLRQLFSGKENVIMGQTGAGKSTLLNHL--APDLQLA--------------------T 188
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKA 269
GE+ST RGKHTTR V+LL ++ GY+ADTPGF+ L++ + LA FPE K
Sbjct: 189 GEISTALNRGKHTTRKVALLRVN-DGYIADTPGFSSYDTLEIDYRQLANYFPEFKRA--- 244
Query: 270 NEPAKCSFNNCLHLGEPGCVVKGD-------WERYQYYFQLLDEIRIRE 311
KC F C+H+ EP C VK + RY+ Y QL +I+ R+
Sbjct: 245 --SVKCRFRGCVHVNEPDCEVKKEVASGEIMQSRYENYLQLYTDIKNRK 291
>gi|385332248|ref|YP_005886199.1| ribosome-associated GTPase [Marinobacter adhaerens HP15]
gi|311695398|gb|ADP98271.1| ribosome-associated GTPase [Marinobacter adhaerens HP15]
Length = 351
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 143/311 (45%), Gaps = 54/311 (17%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--L 70
D+ G + C VRA + + + GDKVV + R N+ QR L
Sbjct: 64 GDQEGDVVRCFVRANIDSL----VTGDKVVWRPGKNETGVIVARSERRNLLQRPDNFGAL 119
Query: 71 DPPVANVDHLLLLFSMDQPKLEPF--ALTRFLVEAESTGIPLTLALNKVELV---DEEVL 125
P AN+DH++L+ + P+ EP + R+LV +E T IP + LNK +L+ + E +
Sbjct: 120 KPVAANIDHIILVIA---PEPEPHDNLIDRYLVASEITDIPAVILLNKTDLITDSNREYI 176
Query: 126 NTWKSRLHTWGYEPLFCSVESKLGLDS--LLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ R GYE + S S + ++DQT+V VG SGVGKSS+I L
Sbjct: 177 DALLGRYEALGYEVVRTSAAESGDKPSPEVEALVKDQTSVFVGQSGVGKSSIIQTLMPD- 235
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
E RVG VS +G+G HTT L L GG L D+PG
Sbjct: 236 ---------------------EAIRVGAVSESTGKGIHTTTTAKLFHLPLGGDLIDSPGI 274
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWER 296
+ L +T Q + F EI+E++ C F NC H+G+PGC + K ER
Sbjct: 275 REFGLWHMTAQEIEYGFREIREVI-----GTCKFRNCRHMGDPGCAIDRAAEEGKISPER 329
Query: 297 YQYYFQLLDEI 307
+ + ++L ++
Sbjct: 330 LKSFHRILQDM 340
>gi|336065066|ref|YP_004559925.1| ribosome biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
gi|334283266|dbj|BAK30839.1| ribosome biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV + + T + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLVTTPDEIRTIQRQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ L+ L L D+ TV +G +GVGKS+L+N + P L
Sbjct: 136 -FCT-----SLEELFPLLTDKVTVFMGQTGVGKSTLLNKI----------------APEL 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L ++
Sbjct: 174 ------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNES 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD-WE-RYQYYFQLLDEIRIREE 312
FPE++ C F +C H EP C VK GD W+ RY Y Q L EI R E
Sbjct: 227 FPELRHF-----SHYCKFRSCTHTHEPSCAVKEALESGDLWQSRYDNYLQFLSEIENRRE 281
>gi|306834359|ref|ZP_07467476.1| ribosome small subunit-dependent GTPase A [Streptococcus bovis ATCC
700338]
gi|304423532|gb|EFM26681.1| ribosome small subunit-dependent GTPase A [Streptococcus bovis ATCC
700338]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV + + T + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEQKAIEPIVYISKMDLVTTPDEIRTIQRQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ L+ L L D+ TV +G +GVGKS+L+N + P L
Sbjct: 136 -FCT-----SLEELFPLLTDKVTVFMGQTGVGKSTLLNKI----------------APEL 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L ++
Sbjct: 174 ------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNES 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD-WE-RYQYYFQLLDEIRIREE 312
FPE++ C F +C H EP C VK GD W+ RY Y Q L EI R E
Sbjct: 227 FPELRHF-----SHYCKFRSCTHTHEPSCAVKEALESGDLWQSRYDNYLQFLSEIENRRE 281
>gi|19704014|ref|NP_603576.1| GTPase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|38257676|sp|Q8R685.1|RSGA_FUSNN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|19714202|gb|AAL94875.1| GTPase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 285
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 140/293 (47%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 20 CKLRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFKRDNLLIRPIVANVDYLAIQ 73
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A I + +NK++ + EE L K S L
Sbjct: 74 FAAKHPNIDFERINLLLLTAFYYKIKPIVIVNKIDYLTEEELVELKEKLSFLERISVPMF 133
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E IL
Sbjct: 134 LISCYQNIGLEEVENFLKDKITVIGGPSGVGKSSFINFLQS--------------ERIL- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 179 -------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 231
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLD 305
FPE + C F NC H+ EPGC VK ERY +Y + L+
Sbjct: 232 FPEFLNI------DSCKFLNCSHIHEPGCNVKKQVEENKISKERYDFYKKTLE 278
>gi|312873203|ref|ZP_07733259.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2052A-d]
gi|311091214|gb|EFQ49602.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2052A-d]
Length = 297
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVISA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREE 312
F EIK K +C F C H+ EP C VK RY Y I+IREE
Sbjct: 238 FYEIKHFSK-----ECKFRQCQHINEPKCAVKVALNNHDILDSRYNSY------IKIREE 286
Query: 313 FQL 315
L
Sbjct: 287 IAL 289
>gi|259501635|ref|ZP_05744537.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners DSM
13335]
gi|302191158|ref|ZP_07267412.1| GTPase [Lactobacillus iners AB-1]
gi|309804756|ref|ZP_07698820.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 09V1-c]
gi|309807740|ref|ZP_07701674.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 01V1-a]
gi|312871583|ref|ZP_07731675.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
3008A-a]
gi|312874666|ref|ZP_07734690.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2053A-b]
gi|315653698|ref|ZP_07906618.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners ATCC
55195]
gi|325912979|ref|ZP_08175352.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
60-B]
gi|329921049|ref|ZP_08277572.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners SPIN
1401G]
gi|259166920|gb|EEW51415.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners DSM
13335]
gi|308165866|gb|EFO68085.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 09V1-c]
gi|308169000|gb|EFO71084.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 01V1-a]
gi|311089896|gb|EFQ48316.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2053A-b]
gi|311092808|gb|EFQ51160.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
3008A-a]
gi|315489060|gb|EFU78702.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners ATCC
55195]
gi|325477659|gb|EGC80798.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
60-B]
gi|328934956|gb|EGG31445.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners SPIN
1401G]
Length = 297
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREE 312
F EIK K +C F C H+ EP C VK RY Y I+IREE
Sbjct: 238 FYEIKHFSK-----ECKFRQCQHINEPKCAVKVALNNHDILDSRYNSY------IKIREE 286
Query: 313 FQL 315
L
Sbjct: 287 IAL 289
>gi|417644611|ref|ZP_12294589.1| ribosome small subunit-dependent GTPase A [Staphylococcus warneri
VCU121]
gi|445059859|ref|YP_007385263.1| putative ribosome biogenesis GTPase RsgA [Staphylococcus warneri
SG1]
gi|330684632|gb|EGG96337.1| ribosome small subunit-dependent GTPase A [Staphylococcus
epidermidis VCU121]
gi|443425916|gb|AGC90819.1| putative ribosome biogenesis GTPase RsgA [Staphylococcus warneri
SG1]
Length = 291
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 142/304 (46%), Gaps = 42/304 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G R L +K K +VGD +V + G I++V +R + PPV+N+
Sbjct: 17 DVNGTRFNTKPRGLFRKKKFSPIVGD--IVDFDVQNETEGYIQHVHERGNALKRPPVSNI 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHT 134
D L+++ S +P+ L RFLV A S G+ + + K ++ D+ E +N++ +
Sbjct: 75 DTLVIVMSAVEPQFSTQLLDRFLVIAHSYGLEARILVTKKDMADDNQIEKINSYLAIYEE 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY F + +L++ + V+ G SGVGKS+ +N
Sbjct: 135 IGYPTQFVGINDD--QHALVEEWGEGLIVLSGQSGVGKSTFLNR---------------- 176
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F+P L + ++S RGKHTTRHV L + G++ADTPGF+ + K
Sbjct: 177 FKPEL------NLDTNDISKSLNRGKHTTRHVELHE-TVNGFIADTPGFSALDFDHIDKD 229
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
L F EI A +C F NC HL EP C VK + + RY++Y QL +EI
Sbjct: 230 ELKDYFIEI-----AQYGEECKFRNCNHLKEPKCNVKEELDVGNIAQFRYEHYLQLFNEI 284
Query: 308 RIRE 311
R+
Sbjct: 285 SERK 288
>gi|383937809|ref|ZP_09991045.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae SK674]
gi|383715299|gb|EID71269.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae SK674]
Length = 292
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI + + C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIDSVSR-----DCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIATFRFDNYLQFLSEIENRRE 281
>gi|322373747|ref|ZP_08048283.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C150]
gi|321278789|gb|EFX55858.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C150]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 45/309 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++L+ D+ + + + G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLERKHIKPVIYISKMDLIEDDSEMKEIQKKYQKIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L + TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLAHKVTVFMGQTGVGKSTLLN--RIAPELK------------- 174
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L+++
Sbjct: 175 -------LETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSES 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPEI++ C F +C H EP C VK + E RY Y Q L EI R E
Sbjct: 227 FPEIRQASHG-----CKFRSCTHTHEPSCAVKDEVENGRIWQVRYDNYLQFLSEIENRRE 281
Query: 313 FQLRTFGTK 321
+T K
Sbjct: 282 TYKKTIKRK 290
>gi|392330024|ref|ZP_10274640.1| ribosome-associated GTPase [Streptococcus canis FSL Z3-227]
gi|391419896|gb|EIQ82707.1| ribosome-associated GTPase [Streptococcus canis FSL Z3-227]
Length = 282
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 139/294 (47%), Gaps = 47/294 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD V + D + G + + R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKRGQTPYVGDIVDFSAED--NSEGYVLAIHARKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD--EEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFL+ E I + ++K++L+D EE+ T + R GY+ F +
Sbjct: 84 EPEFNSNLLDRFLILLEHKAIHPVIYISKMDLLDSAEEIEATGR-RYQEIGYD--FVT-- 138
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
L+ LL L D TV +G +GVGKS+L+N R +P +
Sbjct: 139 ---SLEELLPLLADNITVFMGQTGVGKSTLLN--RIAPELA------------------- 174
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
GE+S GRG+HTTR VS + GG +ADTPGF+ + L ++FPE++
Sbjct: 175 -LETGEISDSLGRGRHTTRAVSFYN-THGGKIADTPGFSSLDYDIDNAEDLNESFPELRR 232
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
+ +C F +C H EP C VK E RY++Y Q L EI R E
Sbjct: 233 L-----SHECKFRSCTHTHEPKCAVKAALESGDLWPVRYEHYLQFLSEIENRRE 281
>gi|297588343|ref|ZP_06946986.1| ribosome small subunit-dependent GTPase A [Finegoldia magna ATCC
53516]
gi|297573716|gb|EFH92437.1| ribosome small subunit-dependent GTPase A [Finegoldia magna ATCC
53516]
Length = 292
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 38/275 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I+ + G I + RS + P V+N+D +L S+ P + L ++
Sbjct: 41 VVGDKV---DINVENGLGFILKIHPRSVLLHRPEVSNIDKCFVLSSIKSPNINLMLLDKY 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + NK +LV E+ + GY+ +F S ES + + LL ++
Sbjct: 98 LLMIEKNNIDCVIVFNKSDLVSEDEKKFYADIYRNIGYKVIFNSNESSITNEELLNEFKN 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ ++GPSG GKSS + L + ED G++S K+ RG
Sbjct: 158 HISCVIGPSGAGKSSTLKKLFPN----------------------EDFVSGKISDKTQRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPEIKEMLKANEPAKCSFN 278
K TTRH+ + + Y+ DTPGF+ L + +S + F E ++ +KC FN
Sbjct: 196 KQTTRHIEIKMVDDNTYVLDTPGFSSFDLSFLDDKSEIKNNFVEFRK-----NSSKCKFN 250
Query: 279 NCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
NC H+ EP C +K E RY Y +++E
Sbjct: 251 NCDHINEPKCEIKRLVETGEISQSRYDNYLNIVEE 285
>gi|365959748|ref|YP_004941315.1| GTPase RsgA [Flavobacterium columnare ATCC 49512]
gi|365736429|gb|AEW85522.1| GTPase RsgA [Flavobacterium columnare ATCC 49512]
Length = 320
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 124/269 (46%), Gaps = 47/269 (17%)
Query: 57 GMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
G+I N+ R I+ V +N+D + LL +++ P + RFLV AE+
Sbjct: 61 GVITNIHDRKNYIVRKSVNLSKQTHIIASNIDVVFLLVTINNPITTTSFIDRFLVTAEAY 120
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI L NK++ D++ L+ + + GY+ L S + G++ L ++D+ ++
Sbjct: 121 GIEAVLVFNKIDTYDDKTLDDQLYLQYIYANIGYQCLRVSAKQNKGIEDLKVLMKDRVSM 180
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
G SGVGKS+L+NAL EP L K E+S + +G+HTT
Sbjct: 181 FSGHSGVGKSTLVNAL----------------EPTLNLK------TKEISEQHQQGQHTT 218
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
+ L G + DTPG ++ + KQ + FPE + +C FNNCLH
Sbjct: 219 TFAEMFDLEFGAKIIDTPGIRGFGVVDMEKQEIGDYFPEFFAL-----KEQCKFNNCLHK 273
Query: 284 GEPGCVVKG-------DWERYQYYFQLLD 305
EP C VK W RY Y Q+L+
Sbjct: 274 EEPHCAVKEALDADAIAWSRYNSYLQILE 302
>gi|171779175|ref|ZP_02920146.1| hypothetical protein STRINF_01023 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379706023|ref|YP_005204482.1| ATP/GTP binding protein [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282231|gb|EDT47658.1| ribosome small subunit-dependent GTPase A [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
gi|374682722|gb|AEZ63011.1| ATP/GTP binding protein [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 137/300 (45%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVDFSAEDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++L+ + + + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLLTSPDEIAAIQKQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ LD LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 136 -FCT-----SLDELLPLLTDKVTVFMGQTGVGKSTLLNKI--------APDL-------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L +
Sbjct: 174 ------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNKA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPE++ + + C F +C H EP C VK E RY Y Q L EI R E
Sbjct: 227 FPELRRLSRL-----CKFRSCTHTHEPSCAVKDAVESGELWQSRYDNYLQFLSEIENRRE 281
>gi|449991612|ref|ZP_21821942.1| ribosome-associated GTPase [Streptococcus mutans NVAB]
gi|449180889|gb|EMB83022.1| ribosome-associated GTPase [Streptococcus mutans NVAB]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 138/293 (47%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ T+ +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITIFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------W-ERYQYYFQLLDEIRIREE 312
A C F +C H EPGC VK W +RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPGCAVKSALAQRKIWKKRYQTYLQILSEIENRRE 281
>gi|83648051|ref|YP_436486.1| ribosome-associated GTPase [Hahella chejuensis KCTC 2396]
gi|123739855|sp|Q2SBB3.1|RSGA_HAHCH RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|83636094|gb|ABC32061.1| predicted GTPase [Hahella chejuensis KCTC 2396]
Length = 348
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 143/304 (47%), Gaps = 52/304 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMI------ENVFQRSTEI--LDPPV 74
C VRA + + + GD V+ W D G+I E+ +R + L P
Sbjct: 73 CYVRANIDSL----VTGDLVI-----WRAGPDNSGVIVARQPRESALKRPDKFGQLKPIA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSR 131
AN+D +L++ + + P+ + R+LV +E+ GIP + LNK +L+++ + L +K +
Sbjct: 124 ANIDQILIVIAAE-PEPHHNLVDRYLVASEAVGIPPLIILNKQDLINDANRDALQQFKDQ 182
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
GYE + S ++ GLD L Q L +T++ VG SGVGKSSLI L
Sbjct: 183 YQQLGYEWIDASTNTQSGLDDLKQHLAHKTSIFVGQSGVGKSSLIKMLLPE--------- 233
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
ED +VG++S +G HTT L L GG L D+PG + L +
Sbjct: 234 -------------EDVKVGDLSENVRKGTHTTTTAKLFHLPSGGDLIDSPGIREFGLWHI 280
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-IRIR 310
+ +L F E + L C F NC H+ EPGC ++ E + ++ +RIR
Sbjct: 281 DEHTLEDGFVEFRPHL-----GHCRFRNCRHIQEPGCALQSAQESGEILTSRMESFLRIR 335
Query: 311 EEFQ 314
E Q
Sbjct: 336 ESLQ 339
>gi|378581312|ref|ZP_09829960.1| ribosome small subunit-dependent GTPase A [Pantoea stewartii subsp.
stewartii DC283]
gi|377816047|gb|EHT99154.1| ribosome small subunit-dependent GTPase A [Pantoea stewartii subsp.
stewartii DC283]
Length = 349
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 153/325 (47%), Gaps = 57/325 (17%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV----DRRGMIENVFQRSTEI 69
+D D G+ C +R + R ++ GD+VV W +G++E V +R++ +
Sbjct: 52 ADVEDSAGITHRCNIRRTI----RSLVTGDRVV-----WRPALNGGKGIVEAVHERTSVL 102
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P+L + R+LV +E+ I L LNK++L+D
Sbjct: 103 TRPDFYDGVKPIAANIDQIIIVSAI-LPELSLNIIDRYLVASETLDIEPLLVLNKIDLLD 161
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
++ ++ + GY L S K GL L L D+ ++ G SGVGKSSL+NA
Sbjct: 162 DKARTFVDEQMAIYRKIGYRVLMVSSHEKAGLSELQAALIDRISIFAGQSGVGKSSLLNA 221
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L D A + N +VS SG G+HTT L GG +
Sbjct: 222 LLGFDQQEDTAILTN-----------------DVSDVSGLGQHTTTASRLYHFPDGGDVI 264
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------K 291
D+PG + L + + + + F E +E L +C F +C H +PGC + K
Sbjct: 265 DSPGVREFGLWHLEPEQITRGFVEFREFL-----GECKFRDCKHGSDPGCAIREAVEQGK 319
Query: 292 GDWERYQYYFQLLD---EIRIREEF 313
D R+ Y ++LD ++++R+ F
Sbjct: 320 IDASRFDNYHRILDSMAQVKVRKNF 344
>gi|377809770|ref|YP_005004991.1| ribosome small subunit-dependent GTPase A [Pediococcus claussenii
ATCC BAA-344]
gi|361056511|gb|AEV95315.1| ribosome small subunit-dependent GTPase A [Pediococcus claussenii
ATCC BAA-344]
Length = 308
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 46/282 (16%)
Query: 46 VVGSIDWVDRR-----GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VVG D+VD + G I V +R ++ PP+AN+D +++ ++ +P L R L
Sbjct: 40 VVG--DFVDFKKEDELGYITAVHERKNNLVRPPLANIDQAVVVTAVKEPDFSTNLLDRQL 97
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE-SKLGLDSLLQR 156
V E I + +K +L+ E + + + GY+ F + E ++ +D L +
Sbjct: 98 VALEEKNIRALIYFSKTDLLTESEYTKFNKTVQYYESMGYQVFFENKEFTQSEIDDLKKL 157
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+++ T+ +G +G GKS+L+N + DV+ + + GEVS
Sbjct: 158 FKNKLTIFMGQTGAGKSTLLNHI----------DVN------------LNLQTGEVSQAL 195
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276
RGKHTTR VSLLP++ G +ADTPGF+ S+ ++ + L + F + ++ C
Sbjct: 196 NRGKHTTRKVSLLPIN-DGLVADTPGFSTYSIFEMQIEDLKEYFMDFVKV-----APNCR 249
Query: 277 FNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
F CLHL EPGC VK E RYQ Y Q ++ I+ ++
Sbjct: 250 FRECLHLNEPGCAVKLGVEDGTILESRYQNYLQFIELIKAQK 291
>gi|333378576|ref|ZP_08470307.1| ribosome biogenesis GTPase RsgA [Dysgonomonas mossii DSM 22836]
gi|332883552|gb|EGK03835.1| ribosome biogenesis GTPase RsgA [Dysgonomonas mossii DSM 22836]
Length = 308
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 125/266 (46%), Gaps = 43/266 (16%)
Query: 54 DRRGMI---ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPL 110
DRR I + + + IL AN+D L+ +++ P + RFL AE+ +P+
Sbjct: 65 DRRNYIIRRSSNLSKQSHIL---AANIDLCFLIVTINHPVTSTVFIDRFLAAAEAYRVPV 121
Query: 111 TLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGP 167
L NK +L EE + + + + GY + S GL+ L ++++++ T+ G
Sbjct: 122 NLIFNKTDLYAEEEIEYMDALISLYDYIGYPSIKISALHNTGLEILQEKIKNKITLFSGH 181
Query: 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227
SGVGKS+LINAL H + G +S G+G HTT
Sbjct: 182 SGVGKSTLINALVPDVHL----------------------KTGAISGYHGKGMHTTTFSE 219
Query: 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287
++ L GG++ DTPG + + K + FPEI KA++ C +NNC+H+ EPG
Sbjct: 220 MIELPQGGFIIDTPGIKGFGTVDMEKNEIFHFFPEI---FKASK--DCRYNNCIHINEPG 274
Query: 288 CVVKGDWE-------RYQYYFQLLDE 306
C V+ E RY+ Y ++ E
Sbjct: 275 CAVREAVENHYISESRYKSYMSMMQE 300
>gi|293402257|ref|ZP_06646395.1| ribosome small subunit-dependent GTPase A [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291304364|gb|EFE45615.1| ribosome small subunit-dependent GTPase A [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 288
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 46/301 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G L C+ L+K K V VGD V + D + I+ + R E+L P +ANV
Sbjct: 18 NEQGEHLACIAMGKLRKHKAPV-VGDVV---KLQRFDAQIGIQKILPRKNELLRPAIANV 73
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-- 135
D +++ S P + R + + I L K++L++E+ + ++ +
Sbjct: 74 DQAIIVMSCKDPDFSTVLVDRLIFQVCYAQIHPILCFTKMDLIEED--DEIHKKIMAYRD 131
Query: 136 -GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ ++ S + D+L+Q L+ + +V+ G SG GKSSL+N + + H
Sbjct: 132 SGYD-VYVSGKG-YASDALIQILKGKISVLTGQSGAGKSSLLNRIDPTFHL--------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+ E+S GRGKHTTRH L ++ GG++ADTPGF+ + Q
Sbjct: 181 -------------QTQEISKALGRGKHTTRHCELHEIA-GGWVADTPGFSSMDFTTMDIQ 226
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+LA+ P+ L +C FN+C+H+ EP C ++ + ERY +Y +++ I
Sbjct: 227 TLAERIPDFAPYLH-----QCKFNDCIHVQEPNCAIREAVEKQEINGERYAHYLEVVQMI 281
Query: 308 R 308
+
Sbjct: 282 K 282
>gi|320103069|ref|YP_004178660.1| ribosome small subunit-dependent GTPase A [Isosphaera pallida ATCC
43644]
gi|319750351|gb|ADV62111.1| ribosome small subunit-dependent GTPase A [Isosphaera pallida ATCC
43644]
Length = 423
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 130/265 (49%), Gaps = 38/265 (14%)
Query: 48 GSIDWVDRR-GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
G I+ V+RR G++ +++ +L VANVD LL++ + + P L+P + R+L+ AE
Sbjct: 177 GFIEKVERRRGIVTRGYRKREHVL---VANVDQLLIVSAFEDPGLKPGLIDRYLISAERG 233
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVG 166
G+ + NK +LVD GYE L SV+S +GLD L L+ T + G
Sbjct: 234 GVRPVIVFNKADLVDLAHYQWIVGLYAQLGYETLVTSVKSGVGLDRLRTILQRGITALSG 293
Query: 167 PSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226
SGVGKSSLINA+ + H +VGEVS+++ +GKHTT
Sbjct: 294 QSGVGKSSLINAVDPAIHL----------------------KVGEVSSQTHKGKHTTTTA 331
Query: 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286
L+ S GG++ DTPG Q L V + FPE + ++ C F +C H E
Sbjct: 332 ELIRTSSGGFVVDTPGLRQFELWGVVPSEIEGYFPEFRPLI-----PHCRFPDCTHTHES 386
Query: 287 GCVVKGDWE-------RYQYYFQLL 304
GC VK RY+ Y +L
Sbjct: 387 GCAVKEAVAEGLIHDGRYESYLKLF 411
>gi|312871991|ref|ZP_07732073.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2062A-h1]
gi|311092568|gb|EFQ50930.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2062A-h1]
Length = 297
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGVFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREE 312
F EIK K +C F C H+ EP C VK RY Y I+IREE
Sbjct: 238 FYEIKHFSK-----ECKFRQCQHINEPKCAVKVALNNHDILDSRYNSY------IKIREE 286
Query: 313 FQL 315
L
Sbjct: 287 IAL 289
>gi|118421049|dbj|BAF37256.1| putative ribosome associated GTPase [Streptococcus bovis]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 137/300 (45%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVDFSAEDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++L+ + + + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLLTSPDEIAAIQKQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ LD LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 136 -FCTF-----LDELLPLLTDKVTVFMGQTGVGKSTLLNKI--------APDL-------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L +
Sbjct: 174 ------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNKA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
FPE++ + + C F +C H EP C VK E RY Y Q L EI R E
Sbjct: 227 FPELRRLSRL-----CKFRSCTHTHEPSCAVKDAVESGELWQSRYDNYLQFLSEIENRRE 281
>gi|15674443|ref|NP_268617.1| ribosome-associated GTPase [Streptococcus pyogenes SF370]
gi|71910037|ref|YP_281587.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS5005]
gi|410679913|ref|YP_006932315.1| ribosome small subunit-dependent GTPase A [Streptococcus pyogenes
A20]
gi|38257748|sp|Q9A1H9.1|RSGA_STRP1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|13621539|gb|AAK33338.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71852819|gb|AAZ50842.1| GTPase [Streptococcus pyogenes MGAS5005]
gi|395454704|dbj|BAM31043.1| ribosome-associated GTPase [Streptococcus pyogenes M1 476]
gi|409692502|gb|AFV37362.1| ribosome small subunit-dependent GTPase A [Streptococcus pyogenes
A20]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + +GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LEIGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|418966520|ref|ZP_13518251.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK616]
gi|383347098|gb|EID25100.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK616]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD V + + + G I + +R ++ PP+ N+D +++ S+
Sbjct: 26 ARGNFRKKGHTPYVGDLVDFSAEE--NSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D L+ ++ GY+ V S
Sbjct: 84 EPDFNSNLLDRFLVLLEHKGIHPIIYISKMDLLEDRGELDFYEQTYGDIGYD----FVTS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
K + LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 140 K---EELLPLLTGKVTVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L QTFPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTTEDLNQTFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 231 --ATVSRDCKFRTCTHTHEPSCAVKPAVEEGTIASFRFDNYLQFLSEIENRRE 281
>gi|308048229|ref|YP_003911795.1| ribosome small subunit-dependent GTPase A [Ferrimonas balearica DSM
9799]
gi|307630419|gb|ADN74721.1| ribosome small subunit-dependent GTPase A [Ferrimonas balearica DSM
9799]
Length = 350
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 41/292 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
+ R L++ ++VGD V G+ G+IE V R +++ P AN
Sbjct: 62 IFRCNLRRTINSLVVGDAVAWRKGAEQLAGIAGVIEAVHPRRSQLARPDYYDGLKVVAAN 121
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+L + R+LV AE TGIP L LNKV+L+D+E + L +
Sbjct: 122 IDQILVVSAV-VPELSSQIIDRYLVAAEDTGIPPVLVLNKVDLLDDEGFALVEEILEPYR 180
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY S ++ G+ L L+D+ ++ VG SGVGKSS+IN L P A
Sbjct: 181 DIGYPIYLVSSQTGEGMAELADCLKDKISIFVGQSGVGKSSMINQLL--PDA-------- 230
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ G+VS+ SG G+HTT LL + GG L D+PG + +L +
Sbjct: 231 ------------ELLTGDVSSNSGLGQHTTTTARLLHFTDGGDLIDSPGVREFALWHLAP 278
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLD 305
+ + F E +E+L C F +C H +PGC ++ E Q Q D
Sbjct: 279 ERVTWGFKEFREVL-----GTCKFRDCKHGDDPGCALRAAVEAGQISTQRFD 325
>gi|307128182|ref|YP_003880213.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
670-6B]
gi|418133428|ref|ZP_12770297.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11304]
gi|306485244|gb|ADM92113.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
670-6B]
gi|353804369|gb|EHD84652.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11304]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|303233881|ref|ZP_07320530.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
BVS033A4]
gi|302494806|gb|EFL54563.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
BVS033A4]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 40/276 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I + G I + RS + P V+NVD +L S+ P + L ++
Sbjct: 41 VVGDKV---DIHVENGLGFILKIHPRSVLLHRPEVSNVDKCFVLTSIKSPNINLMLLDKY 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + NK +LV E N + GY+ +F S ES + LL+ ++
Sbjct: 98 LLMIEKNNIDCVIVFNKSDLVSENERNLFAEIYRNIGYKVIFNSNESSHVNEELLKEFKN 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ ++GPSG GKSS + L + E+ G++S K+ RG
Sbjct: 158 HISCVIGPSGAGKSSTLKKLFPN----------------------ENFVSGKISEKTKRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQ--PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
K TTRH+ + + Y+ DTPGF+ S LK K + F E ++ +KC F
Sbjct: 196 KQTTRHIEIKMVDENTYVLDTPGFSSFDLSFLK-DKSEIKNNFLEFRK-----NSSKCKF 249
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
NNC H+ EP C +K E RY Y ++++E
Sbjct: 250 NNCEHINEPKCEIKKLLESGEISKSRYDNYLKIVEE 285
>gi|120555688|ref|YP_960039.1| ribosome-associated GTPase [Marinobacter aquaeolei VT8]
gi|254766814|sp|A1U4D3.1|RSGA_MARAV RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|120325537|gb|ABM19852.1| ribosome small subunit-dependent GTPase A [Marinobacter aquaeolei
VT8]
Length = 351
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 149/314 (47%), Gaps = 64/314 (20%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMI------ENVFQRSTEI 69
++G C VRA + + + GD+VV W + G+I EN+ QR
Sbjct: 66 ESGQVFRCFVRANIDSL----VTGDRVV-----WRPGKSKTGVIVARCERENLLQRPDNF 116
Query: 70 --LDPPVANVDHLLLLFSMDQPKLEPF--ALTRFLVEAESTGIPLTLALNKVELVDEE-- 123
L P AN+DH++L+ + P+ EP + R+LV +ES+ IP + LNK +L++++
Sbjct: 117 GALKPVAANIDHIILVIA---PEPEPHDNLIDRYLVASESSDIPAVILLNKTDLINDDNR 173
Query: 124 -VLNTWKSRLHTWGYEPLFCSVESKLGLDS--LLQRLRDQTTVIVGPSGVGKSSLINALR 180
+ +R GYE S G + + +R+QT+V VG SGVGKSS+I L
Sbjct: 174 DQIEALLARYQALGYEVARTSAAETAGTPAPEVEALVRNQTSVFVGQSGVGKSSIIQTLL 233
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
E RVG VS +G+G HTT L L GGG L D+
Sbjct: 234 PD----------------------ELLRVGAVSESTGKGVHTTTTAKLFHLPGGGDLIDS 271
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-----KGDW- 294
PG + L +T Q + F EI+ ++ C F NC H+G+PGC + GD
Sbjct: 272 PGIREFGLWHMTPQEVEYGFREIRPLI-----GLCKFRNCRHMGDPGCALDAAAEAGDIS 326
Query: 295 -ERYQYYFQLLDEI 307
ER + + ++L ++
Sbjct: 327 PERLKSFHRILQDM 340
>gi|19745395|ref|NP_606531.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS8232]
gi|50913601|ref|YP_059573.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS10394]
gi|38257665|sp|Q8P2N7.1|RSGA_STRP8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|73919336|sp|Q5XDX3.1|RSGA_STRP6 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|19747503|gb|AAL97030.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|50902675|gb|AAT86390.1| GTPase [Streptococcus pyogenes MGAS10394]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 131/280 (46%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYN--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + KC F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHKCKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|315634035|ref|ZP_07889324.1| GTP-binding protein [Aggregatibacter segnis ATCC 33393]
gi|315477285|gb|EFU68028.1| GTP-binding protein [Aggregatibacter segnis ATCC 33393]
Length = 372
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 145/314 (46%), Gaps = 52/314 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D + G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 76 ARHADVENVQGEIFRCNLRRTLAS----VVVGDRVIWRQGNEQLQGVSGVIEGVHGRKNE 131
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 132 ISRPDYYDGIKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEANIEPIIVLNKADML 190
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EE S+L + GY+ L S ++K L+ L L D ++ VG SGVGKSSLIN
Sbjct: 191 TEEQWQDVDSQLKIYRDIGYQTLMVSAQNKKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 250
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ + A VGE+S+ SG G+HTT L L GG L
Sbjct: 251 AVLPNVAA----------------------LVGEISSTSGLGQHTTTSSRLYHLPQGGSL 288
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F +C HL +PGC ++ E
Sbjct: 289 IDSPGIREFGLWHLEDEQITKGYREFQTVL-----GTCKFRDCKHLNDPGCALRQAVEEG 343
Query: 296 -----RYQYYFQLL 304
RY+ Y +LL
Sbjct: 344 KISAVRYENYHRLL 357
>gi|421292855|ref|ZP_15743587.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56348]
gi|395891416|gb|EJH02414.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56348]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKIDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|408489834|ref|YP_006866203.1| ribosome small subunit-stimulated GTPase RsgA [Psychroflexus
torquis ATCC 700755]
gi|408467109|gb|AFU67453.1| ribosome small subunit-stimulated GTPase RsgA [Psychroflexus
torquis ATCC 700755]
Length = 318
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 136/297 (45%), Gaps = 50/297 (16%)
Query: 32 LKKIKRR--VLVGDKVVVGSIDWVDRR-GMIENVFQRSTEILDPPV----------ANVD 78
LK IK V VGD V + + D G+I+ ++ R I+ V AN+D
Sbjct: 33 LKDIKSTNPVAVGDHVEIDTETKGDETIGIIKEIYDRKNYIIRKSVNLSKQTHIIAANID 92
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--- 135
LL + + P + RFLV AE+ IP+ L NKV+ E K +
Sbjct: 93 LAFLLVTYNNPPTSTTFIDRFLVTAEAYHIPIVLLFNKVDDYSVEEFAEMKYLAELYRKI 152
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY + S E+ +D + ++D +V G SGVGKS+L+NA+
Sbjct: 153 GYTCIGISAETGENIDQVKALMKDNVSVFAGHSGVGKSTLVNAI---------------- 196
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
EP L K E+S + +G+HTT + L GG + DTPG ++ + K +
Sbjct: 197 EPGLNIK------TSEISLQHKQGQHTTTFAEMHELHFGGQIIDTPGIRGFGVVDIDKYA 250
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD-------WERYQYYFQLLD 305
L FPE + +K N C FNNC+H+ EP C VK D + RY+ Y Q+++
Sbjct: 251 LDNYFPEFFK-VKPN----CKFNNCIHVDEPKCAVKEDLTEDKIAYSRYKSYLQIME 302
>gi|225857557|ref|YP_002739068.1| ribosome-associated GTPase [Streptococcus pneumoniae P1031]
gi|410477322|ref|YP_006744081.1| ribosome-associated GTP-binding protein [Streptococcus pneumoniae
gamPNI0373]
gi|417694842|ref|ZP_12344028.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47901]
gi|444383247|ref|ZP_21181440.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8106]
gi|444385932|ref|ZP_21184000.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8203]
gi|444387499|ref|ZP_21185519.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS125219]
gi|444390956|ref|ZP_21188869.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS70012]
gi|444393245|ref|ZP_21190901.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS81218]
gi|444395781|ref|ZP_21193322.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0002]
gi|444398690|ref|ZP_21196170.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0006]
gi|444399509|ref|ZP_21196971.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0007]
gi|444401779|ref|ZP_21198960.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0008]
gi|444404192|ref|ZP_21201152.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0009]
gi|444406706|ref|ZP_21203376.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0010]
gi|444408996|ref|ZP_21205597.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0076]
gi|444412586|ref|ZP_21208907.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0153]
gi|444414942|ref|ZP_21211190.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0199]
gi|444417723|ref|ZP_21213741.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0360]
gi|444420768|ref|ZP_21216536.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0427]
gi|444422148|ref|ZP_21217811.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0446]
gi|225725811|gb|ACO21663.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
P1031]
gi|332199995|gb|EGJ14069.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47901]
gi|406370267|gb|AFS43957.1| ribosome-associated GTP-binding protein [Streptococcus pneumoniae
gamPNI0373]
gi|444248900|gb|ELU55399.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8203]
gi|444250271|gb|ELU56753.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8106]
gi|444252712|gb|ELU59173.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS125219]
gi|444255114|gb|ELU61470.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS70012]
gi|444257422|gb|ELU63759.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0002]
gi|444258767|gb|ELU65088.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0006]
gi|444261512|gb|ELU67814.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS81218]
gi|444267654|gb|ELU73549.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0008]
gi|444268568|gb|ELU74414.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0007]
gi|444272053|gb|ELU77791.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0010]
gi|444274548|gb|ELU80195.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0153]
gi|444277265|gb|ELU82779.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0009]
gi|444280445|gb|ELU85812.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0076]
gi|444280867|gb|ELU86214.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0199]
gi|444282964|gb|ELU88185.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0360]
gi|444283934|gb|ELU89105.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0427]
gi|444288527|gb|ELU93420.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0446]
Length = 292
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGTIAPFRFDNYLQFLSEIENRRE 281
>gi|119776165|ref|YP_928905.1| ribosome-associated GTPase [Shewanella amazonensis SB2B]
gi|119768665|gb|ABM01236.1| ribosome small subunit-dependent GTPase A [Shewanella amazonensis
SB2B]
Length = 351
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 51/311 (16%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSI--DWVDRRGMIENVFQRSTEILDPPV--------AN 76
++R +++ + ++ GDKV++ D G++E V R++ + P + AN
Sbjct: 65 IIRCNIRRTIQSLVTGDKVIIRQALEDGSAIGGVVEAVHPRTSSLTRPDLYDGVKIIAAN 124
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLH 133
+D +L++ S+ P + R+LV +E TGI + LNK++L+++E + R
Sbjct: 125 IDQILIVSSV-VPAFTTQIIDRYLVASEDTGISPVIILNKIDLMNDEDRADIEAALGRYR 183
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
+ GY S +SK G+D++ L D+ +V VG SGVGKSS+INAL P A
Sbjct: 184 SLGYPVYEVSSKSKAGIDTVKALLNDKISVFVGQSGVGKSSMINALL--PDA-------- 233
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ GEVS SG G+HTT LL L GG L D+PG + +L +
Sbjct: 234 ------------ELLTGEVSEGSGLGQHTTTTARLLHLPSGGDLIDSPGVREFALWHLPP 281
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL--- 303
++ F E ++ L C F +C HL +PGC ++ E R+ Y ++
Sbjct: 282 DRVSWCFTEFRDYL-----GTCKFRDCKHLDDPGCSLREALEAGKIHQDRFNNYHRIIAS 336
Query: 304 LDEIRIREEFQ 314
LDE R F+
Sbjct: 337 LDEQRHARHFR 347
>gi|139473081|ref|YP_001127796.1| ribosome-associated GTPase [Streptococcus pyogenes str. Manfredo]
gi|134271327|emb|CAM29545.1| probable GTPase EngC [Streptococcus pyogenes str. Manfredo]
Length = 290
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 131/280 (46%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYN--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------IETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + KC F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHKCKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|288928496|ref|ZP_06422343.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 317 str. F0108]
gi|288331330|gb|EFC69914.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 317 str. F0108]
Length = 310
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 48/257 (18%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE-------VLN 126
AN+D LL+ ++++P+ + RFL AE+ IP+ L NK +L+D++ V+N
Sbjct: 85 AANIDQALLIVTVNRPQTSTTFIDRFLASAEAYRIPVVLVFNKTDLLDDDEMRYQQMVMN 144
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
++ T GY L S E+ G+D + L+ + +++ G SGVGKS+LIN L P A
Sbjct: 145 LYE----TVGYHCLAISAETGAGVDEVRALLKGRISLLSGNSGVGKSTLINRLL--PTA- 197
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+ R E+S G HTT +L L GG++ DTPG
Sbjct: 198 -------------------NLRTAEISNAHNAGMHTTTFSEMLELPEGGWVIDTPGIKGF 238
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQY 299
+ + L+ F EI E K C FNNC H EPGC V RYQ
Sbjct: 239 GTFDIERNELSSYFKEIFEFSKG-----CRFNNCTHTHEPGCAVLQALNDHYIAQSRYQS 293
Query: 300 YFQLL---DEIRIREEF 313
Y +L DE + RE +
Sbjct: 294 YLSMLDDKDESKYREAY 310
>gi|58337591|ref|YP_194176.1| hypothetical protein LBA1316 [Lactobacillus acidophilus NCFM]
gi|227904231|ref|ZP_04022036.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|75357506|sp|Q5FJH9.1|RSGA_LACAC RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|58254908|gb|AAV43145.1| hypothetical protein LBA1316 [Lactobacillus acidophilus NCFM]
gi|227867879|gb|EEJ75300.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 296
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 143/309 (46%), Gaps = 55/309 (17%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDP 72
D TG+ + R + ++ K++ VGD+V + +D +GM + + R I P
Sbjct: 17 DVETATGI-VRTRARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVEILPRINRIGRP 71
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV H+LL+ S +P L RFL + +T+ L+K +L+ E+ LN K L
Sbjct: 72 AVANVSHVLLVISAVEPDFSLELLDRFLTFFSWQKVNVTIYLSKADLISEQRLNEIKESL 131
Query: 133 HTW---GYEPLFC---SVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHA 185
+ GY P+F +E K+G ++D Q + G SG GKS+L+N L+
Sbjct: 132 DYYQKIGY-PVFIDYHHLEEKIG-----DMIKDNQIWTLAGQSGAGKSTLLNHLK----- 180
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
DA +Q G +ST RGKHTTR V L L G G+LADTPGF+
Sbjct: 181 KDA-----------------NQTTGAISTSLNRGKHTTRKVELFKL-GHGFLADTPGFSS 222
Query: 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQ 298
L + L F E K K KC F C H+ EPGC VK E RY
Sbjct: 223 IDLTPIKLNELCNYFIEFKRASK-----KCKFRGCQHIKEPGCEVKKLLEEGKILHSRYD 277
Query: 299 YYFQLLDEI 307
Y + EI
Sbjct: 278 DYLAMRTEI 286
>gi|409202546|ref|ZP_11230749.1| GTPase RsgA [Pseudoalteromonas flavipulchra JG1]
Length = 350
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 48/301 (15%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
V+R +++ ++ GD+V+ + D G+IE V +R T++ P AN
Sbjct: 66 VLRCNIRRTVTSLVCGDEVIFRRAKVSDGDLAGVIEAVHERRTQLTRPDFYDGVKVVAAN 125
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNK++L+D+E L L +
Sbjct: 126 IDQILMVSAV-VPEFTPQIIDRYLVACEDMGIEPILLLNKIDLLDQESLEYIDEVLDIYR 184
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY L S +S G+D L L D+ + VG SGVGKS+L+N + P+A
Sbjct: 185 ELGYRVLLVSTKSGEGIDELKHMLEDKNNIFVGQSGVGKSTLVNTV--LPNA-------- 234
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D EVS SG G+HTT L L GG L D+PG + L +
Sbjct: 235 ------------DILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDV 282
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ + F E +E + C F +C HL +PGC+++ + R++ Y ++L+
Sbjct: 283 ERVTWCFKEFREFI-----GGCRFRDCKHLNDPGCLLREAVDEGKISELRFESYHRILES 337
Query: 307 I 307
+
Sbjct: 338 M 338
>gi|255036955|ref|YP_003087576.1| ribosome-associated GTPase [Dyadobacter fermentans DSM 18053]
gi|254949711|gb|ACT94411.1| ribosome small subunit-dependent GTPase A [Dyadobacter fermentans
DSM 18053]
Length = 311
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 47/296 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVD 78
+AL K+ + VGD V + + G+I + R ++ V ANVD
Sbjct: 36 KALGLKVTNPIAVGDYVNFEVENEGENFGIIHEIVPRENYVIRRSVHKTAHAHLIAANVD 95
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--- 135
+L+ ++ P+ + RFLV ES IP L NK +L+D+E+ + +
Sbjct: 96 QAILIATLVFPRTSLGFIDRFLVAIESFRIPGVLVFNKQDLLDDEMKGFQAELMELYTSL 155
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY + + ++LGL+ Q L+ + +++ G SGVGKS+L+NA+ A D+D
Sbjct: 156 GYRCIATTALAELGLEDFKQILKGKVSLLSGHSGVGKSTLVNAI--------APDLD--- 204
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
+ EVST + +G HTT + L G ++ D+PG + L + K+
Sbjct: 205 -----------IKTQEVSTFANKGVHTTTFAEMFELEKGTFIIDSPGIKELGLADMEKEE 253
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
++ FPE++E L +C FNNC H+ EPGC VK RY+ Y ++
Sbjct: 254 ISHYFPEMRERLN-----ECRFNNCQHINEPGCAVKDAVSEGKIAITRYESYLSMM 304
>gi|282881997|ref|ZP_06290638.1| ribosome small subunit-dependent GTPase A [Peptoniphilus lacrimalis
315-B]
gi|281298027|gb|EFA90482.1| ribosome small subunit-dependent GTPase A [Peptoniphilus lacrimalis
315-B]
Length = 285
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 44/295 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + +K +VGD V D + G I+ ++ R + P VANVD ++L +
Sbjct: 26 ARGTFRYVKESPIVGDNVEFNYDD--NTLGYIQKIYPRKNILTRPKVANVDLIVLFIPLK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
P + + +V+ E + I + +A+NK + +D + ++ G+ + S ++
Sbjct: 84 NPDYNLTLIDKTIVQIEISNIDILIAINKAD-IDISKAENLQKIYNSCGFNTILISGKTG 142
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
L +D+L ++LR +T G SG GKS++ S D+
Sbjct: 143 LNIDTLKEKLRGKTVAFAGVSGAGKSTI-------------------------SSLILDK 177
Query: 208 RV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
++ GEVS K+GRGKHTTRH L + ++ DTPGF+ +K+ K+ L F E +
Sbjct: 178 KIESGEVSQKTGRGKHTTRHTE-LHYNSDYFIFDTPGFSSLD-IKLDKKDLCHYFREFEN 235
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREEF 313
L +C F NC H+ EP C++K E RY+ Y L E++ +EE+
Sbjct: 236 YL-----GQCKFLNCNHINEPDCMIKRKVENGEIPISRYENYKYLYQELKNKEEY 285
>gi|441502757|ref|ZP_20984766.1| Ribosome small subunit-stimulated GTPase EngC [Photobacterium sp.
AK15]
gi|441429672|gb|ELR67125.1| Ribosome small subunit-stimulated GTPase EngC [Photobacterium sp.
AK15]
Length = 350
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 57/317 (17%)
Query: 14 SDCND-KTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTE 68
+D D +TG+ C +R ++ + + GD+VV V ++ + G++E V +R +
Sbjct: 53 ADVEDPETGIIHRCNLRRSIQSL----VSGDRVVWRPGVEALQGI--AGVVEAVHERESM 106
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ P ANV+ ++++ ++ P+L + R+L+ AE+ GI + LNKV+L+
Sbjct: 107 LTRPDYYDGVKAVAANVNRIIIVSAV-VPELSLNIIDRYLIAAETVGIEPLIVLNKVDLL 165
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
D+E + L + GY+ F S ++ G+D L + L+D T+ G SGVGKSS++N
Sbjct: 166 DDENRQQVEQTLSLYQDIGYQLRFVSTDTGEGMDQLKEDLKDHVTIFAGQSGVGKSSMVN 225
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
AL P D +G+VS SG G+HTT L GG L
Sbjct: 226 AL--MPEV--------------------DAEIGDVSENSGLGQHTTTAARLYHFPEGGDL 263
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV------- 290
D+PG + L + + + + F E +E L C F +C H +PGC++
Sbjct: 264 IDSPGVREFGLWHLEPEQVTEAFVEFREYL-----GGCKFRDCKHGNDPGCLIREAVEEG 318
Query: 291 KGDWERYQYYFQLLDEI 307
K ERY+ Y ++++ +
Sbjct: 319 KISQERYESYHRIIESM 335
>gi|357636844|ref|ZP_09134719.1| ribosome small subunit-dependent GTPase A [Streptococcus macacae
NCTC 11558]
gi|357585298|gb|EHJ52501.1| ribosome small subunit-dependent GTPase A [Streptococcus macacae
NCTC 11558]
Length = 290
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 137/302 (45%), Gaps = 45/302 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD+V + + + G I + +R ++ PP+ NVD ++++ S
Sbjct: 26 ARGNFRKKGHTPYVGDEVEFSAKEHSE--GYILAIHKRKNSLVRPPIVNVDQVVVMISAR 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVES 146
+P P L RFL+ E I + L+K +L+++ L T + + GY ++
Sbjct: 84 EPDFNPNLLDRFLILLEHKKINPIIYLSKTDLLEDLADLKTVQKQYQEIGYHFIY----- 138
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGKS+L+N L A D+
Sbjct: 139 --HLEDLTPLLKDKITVFMGQTGVGKSTLLNTL--------APDL--------------K 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR VSL + GG +ADTPGF+ + + L FPE
Sbjct: 175 LETAEISDSLGRGRHTTRAVSLYKVCGGE-MADTPGFSSLDYEITSSEDLNAAFPEF--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREEFQLRTFG 319
+ C F +C H EP C VK W+ RY Y Q L EI R E +T
Sbjct: 231 --LKRSSACKFRSCTHTHEPDCAVKKALHAGQIWQSRYDNYLQFLSEIENRRETYKKTIK 288
Query: 320 TK 321
K
Sbjct: 289 RK 290
>gi|349611594|ref|ZP_08890827.1| ribosome small subunit-dependent GTPase A [Lactobacillus sp.
7_1_47FAA]
gi|348608441|gb|EGY58423.1| ribosome small subunit-dependent GTPase A [Lactobacillus sp.
7_1_47FAA]
Length = 297
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 146/301 (48%), Gaps = 56/301 (18%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLIPSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDE-----IRIREEFQ 314
F EIK K +C F C H+ EP C VK ++ +LD I+IREE
Sbjct: 238 FYEIKHFSK-----ECKFRQCQHINEPKCAVKVALNKH----DILDSRYNSYIKIREEIA 288
Query: 315 L 315
L
Sbjct: 289 L 289
>gi|392540395|ref|ZP_10287532.1| GTPase RsgA [Pseudoalteromonas piscicida JCM 20779]
Length = 350
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 48/301 (15%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
V+R +++ ++ GD+V+ + D G+IE V +R T++ P AN
Sbjct: 66 VLRCNIRRTVTSLVCGDEVIFRRAKVSDGDLAGVIEAVHERRTQLTRPDFYDGVKVVAAN 125
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNK++L+D+E L L +
Sbjct: 126 IDQILMVSAV-VPEFTPQIIDRYLVACEDMGIEPILLLNKIDLLDQESLEYIDEVLDIYR 184
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY L S +S G+D L L D+ + VG SGVGKS+L+N + P+A
Sbjct: 185 ELGYRVLLVSTKSGEGIDELKHMLEDKNNIFVGQSGVGKSTLVNTVL--PNA-------- 234
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D EVS SG G+HTT L L GG L D+PG + L +
Sbjct: 235 ------------DILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDV 282
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
+ + F E +E + C F +C HL +PGC+++ + R++ Y ++L+
Sbjct: 283 ERVTWCFKEFREFI-----GGCRFRDCKHLNDPGCLLREAVDEGKISELRFESYHRILES 337
Query: 307 I 307
+
Sbjct: 338 M 338
>gi|409198317|ref|ZP_11226980.1| GTPase RsgA [Marinilabilia salmonicolor JCM 21150]
Length = 308
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 47/269 (17%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENV-------------FQRSTEILDPPVANVDHLLLLFS 85
V VGD+V+ S+D G+IE + R T+IL AN+D +++ +
Sbjct: 43 VAVGDRVMY-SVDEATGTGVIEKIGDRRNFIVRRASNLSRQTQIL---AANIDQAIIVAT 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
++ P P + R L E+ IP T+ NKV+ D ++ L +K GY+ L
Sbjct: 99 INYPVTTPVFIDRLLATTEAYDIPATVIFNKVDRYDHFHKDQLADYKEIYEKIGYKVLTT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + L+ + L+ + +++ G SGVGKS+L+N + EP L
Sbjct: 159 SAKHDEDLECVKDLLKGKVSLLAGHSGVGKSTLVNRV----------------EPAL--- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + G +S + G+HTT + PLS GGY+ DTPG L + K+ LA F E
Sbjct: 200 ---NLKTGRISDRHHTGRHTTTFAEMHPLSFGGYIIDTPGIRGFGLFNIEKEELAHYFRE 256
Query: 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
I ++ + C + NC HL EPGC VK
Sbjct: 257 IFKV-----ASGCRYYNCTHLHEPGCAVK 280
>gi|256847369|ref|ZP_05552815.1| ribosome small subunit-dependent GTPase A [Lactobacillus
coleohominis 101-4-CHN]
gi|256716033|gb|EEU31008.1| ribosome small subunit-dependent GTPase A [Lactobacillus
coleohominis 101-4-CHN]
Length = 289
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 140/292 (47%), Gaps = 48/292 (16%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K + LVGD V + D G + + R+ +++ P VANVD +++ +
Sbjct: 28 RGNFRKRGIKPLVGDHV-----QFAD--GYLLAIEPRTNQLVRPMVANVDTAIVVTAASN 80
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVE 145
P+ L R L+ E+ I + +KV+L+ E L T+ GY ++ S E
Sbjct: 81 PQFSSNLLDRQLIALEAQSITPIIFFSKVDLLSAEEAQKLQTFVDGYRQIGYS-VYYSKE 139
Query: 146 --SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ LD L Q+++ Q ++G +G GKS+L+N L +P+
Sbjct: 140 PYCQTNLDQLQQQIKGQIVTMMGQTGAGKSTLLNHL--APNL------------------ 179
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
D GEVS RG+HTTR V+LL + G +ADTPGF+ ++TK+ L Q FPE+
Sbjct: 180 --DLPTGEVSKALKRGRHTTRKVALLKV-GNALVADTPGFSSYEDFQMTKEELPQLFPEM 236
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIR 308
K + KC F CLHL EPGC VK E RY Y Q + IR
Sbjct: 237 KRL-----APKCKFRGCLHLQEPGCAVKNAVEDGKILESRYNNYVQFQELIR 283
>gi|90407112|ref|ZP_01215301.1| ribosome-associated GTPase [Psychromonas sp. CNPT3]
gi|90311834|gb|EAS39930.1| ribosome-associated GTPase [Psychromonas sp. CNPT3]
Length = 346
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 49/299 (16%)
Query: 29 RALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI--------LDPPVANVD 78
R L++ R ++ GD+VV G+ + G++E V R + + + P AN+
Sbjct: 63 RCTLRRAVRSLVTGDRVVWRAGNEAYHGITGVVEAVHPRDSVLTRPDYYDGIKPIAANIG 122
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--- 135
++++ S+ P+ + R+++ E GI +ALNK +L+DE L ++
Sbjct: 123 QIIIVSSV-APEFSRNIIDRYIIACEDIGITPIIALNKSDLLDETNAAIIDKELQSYRDI 181
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY L+CS+ GL+SL ++D+ ++ VG SGVGK+SL+N L A+
Sbjct: 182 GYHVLYCSMHGD-GLESLKTVMKDEISIFVGQSGVGKTSLLNMLLPEVEAT--------- 231
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
GE+S SG GKHTT L + GG + D+PG + SL + +
Sbjct: 232 -------------TGEISEGSGLGKHTTTTARLYHFADGGDIIDSPGIREFSLWHLEPER 278
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEI 307
+A F E +E L +C F +C H +PGC + K D RY + ++L+ +
Sbjct: 279 IASGFVEFREYL-----GECRFRDCKHKIDPGCALVEAVQAGKIDKARYASFLRILETM 332
>gi|302380738|ref|ZP_07269203.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
ACS-171-V-Col3]
gi|417925922|ref|ZP_12569335.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
SY403409CC001050417]
gi|302311681|gb|EFK93697.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
ACS-171-V-Col3]
gi|341590524|gb|EGS33762.1| ribosome small subunit-dependent GTPase A [Finegoldia magna
SY403409CC001050417]
Length = 292
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 40/276 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I + G I + RS + P V+NVD +L S+ P + L ++
Sbjct: 41 VVGDKV---DIHVENGLGFILKIHPRSVLLHRPEVSNVDKCFVLTSIKSPNINLMLLDKY 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + NK +LV E N + GY+ +F S ES + LL+ ++
Sbjct: 98 LLMIEKNNIDCVIVFNKSDLVSENERNLFAEIYRNIGYKVIFNSNESSHVNEELLKEFKN 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ ++GPSG GKSS + L + E+ G++S K+ RG
Sbjct: 158 HISCVIGPSGAGKSSTLKKLFPN----------------------ENFVSGKISEKTQRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQ--PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
K TTRH+ + + Y+ DTPGF+ S LK K + F E ++ +KC F
Sbjct: 196 KQTTRHIEIKMVDENTYVLDTPGFSSFDLSFLK-DKSEIKNNFLEFRK-----NSSKCKF 249
Query: 278 NNCLHLGEPGCVVKGDWE-------RYQYYFQLLDE 306
NNC H+ EP C +K E RY Y ++++E
Sbjct: 250 NNCEHINEPKCEIKKLLESGEISKSRYDNYLKIVEE 285
>gi|259047432|ref|ZP_05737833.1| ribosome small subunit-dependent GTPase A [Granulicatella adiacens
ATCC 49175]
gi|259035623|gb|EEW36878.1| ribosome small subunit-dependent GTPase A [Granulicatella adiacens
ATCC 49175]
Length = 296
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 137/293 (46%), Gaps = 41/293 (13%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + +K + LVGD V S + + G + + R I+ PPVANVD +++ S +
Sbjct: 28 RGVFRKRGQSPLVGDVVEFESSNL--QEGTLTKILPRKNTIVRPPVANVDVGIIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVE 145
P+ + RFLV E + + + K +L+ E L + GY P+F E
Sbjct: 86 PEFSTHLVDRFLVYLEGLHVHPIIMVTKTDLLTAQGLEKLEEIRKNYQKIGY-PVFFGQE 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
L+ L+ Q + +G SGVGKS+L+N + P L
Sbjct: 145 VINDKTPFLEALKGQKVIFLGQSGVGKSTLLNEMI----------------PEL------ 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
+Q GE+S GRG+HTTRHVSL + G ++ADTPGF+ + + K+ L FPE E
Sbjct: 183 NQETGEISNALGRGRHTTRHVSLHEIE-GVWIADTPGFSTVDFMGIEKEDLPHLFPEFVE 241
Query: 266 MLKANEPAKCSFNNCLHLGEPGCVV-----KGD-W-ERYQYYFQLLDEIRIRE 311
+ +C F C H EP C V GD W ERY +Y +E+ R+
Sbjct: 242 V-----EHECKFRECSHQHEPNCSVIAAVESGDIWQERYDHYLNFYEELDQRK 289
>gi|261867656|ref|YP_003255578.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415767762|ref|ZP_11483392.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416107818|ref|ZP_11590737.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345687|ref|ZP_21153694.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412988|gb|ACX82359.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004855|gb|EGY45347.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348658306|gb|EGY75877.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542550|gb|ELT52871.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 346
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 147/318 (46%), Gaps = 52/318 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TELQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AVL--PHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F +C HL +PGC ++ E
Sbjct: 263 IDSPGIREFGLWHLEDEQITRGYREFQTVL-----GTCKFRDCKHLNDPGCALRQAVEEG 317
Query: 296 -----RYQYYFQLLDEIR 308
RY+ Y +LL R
Sbjct: 318 KISAVRYENYHRLLTSRR 335
>gi|336418049|ref|ZP_08598328.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
11_3_2]
gi|336160508|gb|EGN63553.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
11_3_2]
Length = 297
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 47/293 (16%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + G++S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGKISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD 305
FPE + C F NC H EPGC VK + E RY +Y + L+
Sbjct: 241 FPEFSNI------ESCKFLNCSHTHEPGCNVKKEVEENKISKDRYDFYKKTLE 287
>gi|21903911|gb|AAM78798.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 248
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 126/264 (47%), Gaps = 43/264 (16%)
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G I ++ R ++ PP+ N+D +++ S +P+ L RFL+ E I + ++K
Sbjct: 11 GYILAIYPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFLILLEHKAIHPVVYISK 70
Query: 117 VELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
++L+D E + + GY+ F + L+ LL L D+ TV +G +GVGKS+L
Sbjct: 71 MDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLADKITVFMGQTGVGKSTL 123
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+N R +P + GE+S GRG+HTTR VS + GG
Sbjct: 124 LN--RIAPELA--------------------LETGEISDSLGRGRHTTRAVSFYN-THGG 160
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295
+ADTPGF+ + L + FPE++ + +C F +C H EP C VK E
Sbjct: 161 KIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRSCTHTHEPKCAVKAALE 215
Query: 296 -------RYQYYFQLLDEIRIREE 312
RY++Y Q L EI R E
Sbjct: 216 TGELWPVRYEHYLQFLSEIENRRE 239
>gi|373452527|ref|ZP_09544440.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. 3_1_31]
gi|371966396|gb|EHO83886.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. 3_1_31]
Length = 288
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 46/301 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G L C+ L+K K V VGD V + D + I+ + R E+L P +ANV
Sbjct: 18 NEQGEHLACIAMGKLRKHKAPV-VGDVV---KLQRFDAQIGIQKILPRKNELLRPAIANV 73
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-- 135
D +++ S P + R + + I L K++L++E+ + ++ +
Sbjct: 74 DQAIIVMSCKDPDFSTVLVDRLIFQVCYAQIHPILCFTKMDLIEED--DEIHKKIMAYRD 131
Query: 136 -GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ D+L+Q L+ + +V+ G SG GKSSL+N + + H
Sbjct: 132 SGYDVYISG--KGYASDALIQILKGKISVLTGQSGAGKSSLLNRIDPTFHL--------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+ E+S GRGKHTTRH L ++ GG++ADTPGF+ + Q
Sbjct: 181 -------------QTQEISKALGRGKHTTRHCELHEIA-GGWVADTPGFSSMDFTTMDIQ 226
Query: 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307
+LA+ P+ L C FN+C+H+ EP C ++ + ERY +Y +++ I
Sbjct: 227 TLAERIPDFAPYLH-----HCKFNDCIHVQEPNCAIREAVEKQEINGERYAHYLEVVQMI 281
Query: 308 R 308
+
Sbjct: 282 K 282
>gi|329961846|ref|ZP_08299860.1| ribosome small subunit-dependent GTPase A [Bacteroides fluxus YIT
12057]
gi|328531286|gb|EGF58130.1| ribosome small subunit-dependent GTPase A [Bacteroides fluxus YIT
12057]
Length = 310
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 40/253 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ IP+ L NKV+ ++E L+ ++
Sbjct: 85 AANLDQCILVVTVNFPETSTTFIDRFLASAEAYRIPVKLIFNKVDAYNKEELHYLDGLIN 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY L S G++++++ L+ +TT+ G SGVGKS+LINA+
Sbjct: 145 LYTTIGYPCLKVSALQGEGIEAVIEELKGKTTLFSGHSGVGKSTLINAIL---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L D + GE+S +G HTT + P+SG GY+ DTPG
Sbjct: 195 ------PDL------DIKTGEISAYHNKGMHTTTFSEMFPVSGNGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ + FPEI + A C ++NC H EPGC V+ E RY Y +
Sbjct: 243 MEEEEIGHYFPEIFKT-----SADCRYSNCTHRKEPGCAVRKAVEEHYISESRYTSYLGM 297
Query: 304 LDEIRIREEFQLR 316
L++ +EE + R
Sbjct: 298 LED---KEEGKYR 307
>gi|262273023|ref|ZP_06050842.1| ribosome small subunit-stimulated GTPase EngC [Grimontia hollisae
CIP 101886]
gi|262222933|gb|EEY74239.1| ribosome small subunit-stimulated GTPase EngC [Grimontia hollisae
CIP 101886]
Length = 350
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 59/322 (18%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--- 69
+ +TGV C +R ++ + + GD VV V S+ + G++E V +R + +
Sbjct: 57 DSQTGVIHRCNLRRSIESL----VTGDNVVWRPGVESLQGI--AGVVEAVHERHSVLTRP 110
Query: 70 -----LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ P ANVD ++++ ++ P+L + R+L+ E G + +NK++L+D+E
Sbjct: 111 DYYDGVKPVAANVDQVVIVSAI-LPELSTNIIDRYLIATEQVGFKPLIVINKIDLLDKEG 169
Query: 125 LNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
L K+ L + GY+ L S ++ G+D L L T++ VG SGVGKSSL+NAL
Sbjct: 170 LERIKNILTLYTDIGYDVLMVSQKTGEGIDDLKAYLAGSTSIFVGQSGVGKSSLVNALLP 229
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+A GEVS SG G+HTT L GGG L D+P
Sbjct: 230 EVNAD----------------------TGEVSENSGLGQHTTTTARLYHFPGGGDLIDSP 267
Query: 242 GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDW 294
G + L + + + Q F E ++ L C F +C H +PGC++ K
Sbjct: 268 GVREFGLWHLEPEQVTQGFKEFRDYL-----GGCKFRDCKHKDDPGCLLREALEEGKISI 322
Query: 295 ERYQYYFQLLD---EIRIREEF 313
ER++ Y +++D E++ +F
Sbjct: 323 ERFESYHKIIDSMSEVKANRQF 344
>gi|149012427|ref|ZP_01833458.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP19-BS75]
gi|418190217|ref|ZP_12826728.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47373]
gi|147763483|gb|EDK70419.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP19-BS75]
gi|353853047|gb|EHE33031.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47373]
Length = 292
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFFNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|375129183|ref|YP_004991277.1| ribosome small subunit-dependent GTPase A [Vibrio furnissii NCTC
11218]
gi|315178351|gb|ADT85265.1| ribosome small subunit-dependent GTPase A [Vibrio furnissii NCTC
11218]
Length = 353
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 46/305 (15%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI--------LDP 72
E + R L++ ++ GD+V+ G G++E V R++ + L P
Sbjct: 58 ETQAIHRCNLRRGIESLVSGDRVIWRPGIETMAGISGVVEAVEPRTSVLTRPDYYDGLKP 117
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWK 129
ANV+ ++++ S+ P+L + R+L+ AE+ I L LNKV+L+DE+ W
Sbjct: 118 VAANVNQMVIVSSV-LPELSLNIIDRYLIAAETLAIAPLLVLNKVDLLDEDQRAQYEQWL 176
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
S GY+ L+ S S G+++L +LRD+T + VG SGVGKSSL+NAL
Sbjct: 177 SAYEKIGYDVLYVSKNSGEGIEALEAKLRDRTNIFVGQSGVGKSSLVNAL--------MP 228
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
++D E GE+S SG G+HTT L + GG L D+PG + L
Sbjct: 229 ELDEMVEE------------GEISENSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLW 276
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQ 302
+ + + + F E + L C F +C H +PGC+++ E R++ Y +
Sbjct: 277 HLEAEDVTKAFVEFRPYL-----GGCKFRDCKHGDDPGCMLREAVEKGEISATRFENYHR 331
Query: 303 LLDEI 307
+++ +
Sbjct: 332 IIESM 336
>gi|212555138|gb|ACJ27592.1| GTPase [Shewanella piezotolerans WP3]
Length = 355
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 58/327 (17%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV----GSIDWVDR-RGMIENVFQRSTE 68
+D +TG C +R +K + + GDKV+V S R G++E V R +
Sbjct: 56 ADVETETGHLARCNIRRNIKSL----VTGDKVIVRLALTSESGASRIEGIVEAVHPRHSL 111
Query: 69 ILDPPV--------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ P + AN+D +L++ S+ +P + R+LV +E TGI + LNKV+L+
Sbjct: 112 LSRPDLYDGVKIIAANIDQILIVTSV-KPAFTTQIIDRYLVASEDTGIAPVIVLNKVDLI 170
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E L ++ L + GY+ S ++ G++ + Q + + +V VG SGVGKSS+IN
Sbjct: 171 TPEELPEIEAALQRYRDIGYDVYKVSSKTGEGVEQINQLMDGKVSVFVGQSGVGKSSMIN 230
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ P A + G++S SG G+HTT LL +S GG L
Sbjct: 231 AMM--PDA--------------------ELLTGDISENSGLGQHTTTTAKLLHISTGGDL 268
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + +L + + + Q F E ++ L C F +C HL +PGC + E
Sbjct: 269 IDSPGVREFALWHLPAERVGQCFIEFRDYL-----GTCKFRDCKHLNDPGCSIAEALEAG 323
Query: 296 -----RYQYYFQL---LDEIRIREEFQ 314
RYQ Y ++ LDE R F+
Sbjct: 324 EISQDRYQNYHKIIASLDEQRHARHFR 350
>gi|300728353|ref|ZP_07061717.1| ribosome small subunit-dependent GTPase A [Prevotella bryantii B14]
gi|299774389|gb|EFI71017.1| ribosome small subunit-dependent GTPase A [Prevotella bryantii B14]
Length = 310
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 115/257 (44%), Gaps = 48/257 (18%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE-------VLN 126
AN+D L+ ++ P+ + RFL AE+ IP+ L NK +++DE+ ++N
Sbjct: 85 AANLDQAFLIVTISHPQTSTTFIDRFLAGAEAYRIPVVLVFNKHDVLDEDEIRYEGMMIN 144
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
++ T GY+ ++ G+D L Q L+ + T+ G SGVGKS+LIN L H
Sbjct: 145 LYE----TIGYQCKVICAKTGEGVDELRQMLQGKITLFSGNSGVGKSTLINQLLPDAHL- 199
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
R E+S G HTT +L GGGY+ DTPG
Sbjct: 200 ---------------------RTSEISEAHDAGMHTTTFSEMLEFPGGGYVIDTPGIKGF 238
Query: 247 SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQY 299
+ K+ L F EI E K C F+NC H EPGC V E RYQ
Sbjct: 239 GTFDIEKEELTSYFKEIFEFSK-----DCKFSNCTHTHEPGCAVIRAVEDHYISASRYQS 293
Query: 300 YFQLL---DEIRIREEF 313
Y +L DE + RE F
Sbjct: 294 YLSMLEDKDENKYREAF 310
>gi|386362091|ref|YP_006071422.1| ribosome small subunit-dependent GTPase A [Streptococcus pyogenes
Alab49]
gi|350276500|gb|AEQ23868.1| ribosome small subunit-dependent GTPase A [Streptococcus pyogenes
Alab49]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILTIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|417928390|ref|ZP_12571778.1| ribosome small subunit-dependent GTPase A [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340766264|gb|EGR88790.1| ribosome small subunit-dependent GTPase A [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVIYISKMDLLDSPEEIEAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|325979160|ref|YP_004288876.1| ribosome biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325179088|emb|CBZ49132.1| ribosome biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 139/302 (46%), Gaps = 49/302 (16%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+++ S +P L RFLV E I + ++K++LV DE + + + GY
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLVITPDE--IRAIQRQYQEIGY 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ FC+ L+ LL L D+ TV +G +GVGKS+L+N + P
Sbjct: 135 Q--FCT-----SLEELLPLLTDKVTVFMGQTGVGKSTLLNKI----------------AP 171
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L GE+S GRG+HTTR VS ++GG +ADTPGF+ + L
Sbjct: 172 EL------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLN 224
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD-WE-RYQYYFQLLDEIRIR 310
+ FPE++ + C F +C H EP C VK GD W+ RY Y Q L EI R
Sbjct: 225 EAFPELRHL-----SHYCKFRSCTHTHEPSCAVKEALESGDLWQSRYDNYLQFLSEIENR 279
Query: 311 EE 312
E
Sbjct: 280 RE 281
>gi|374595171|ref|ZP_09668175.1| ribosome biogenesis GTPase RsgA [Gillisia limnaea DSM 15749]
gi|373869810|gb|EHQ01808.1| ribosome biogenesis GTPase RsgA [Gillisia limnaea DSM 15749]
Length = 318
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 50/296 (16%)
Query: 32 LKKIKRR--VLVGDKVVVGSIDWV-DRRGMIENVFQRSTEILDPPV----------ANVD 78
LK IK V VGD+V + + D +G+I+ + R I+ V +N+D
Sbjct: 33 LKGIKSTNPVAVGDRVKFDLEEGLEDVKGVIKEIEDRDNYIIRKSVNLSKQTHIIASNID 92
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--- 135
LL +++ P + RFL+ AE+ I L NK+++ +E+ L K +
Sbjct: 93 QAFLLVTLNNPPTFTTFIDRFLITAEAYHIKTVLLFNKIDIFNEDELAEIKFLAALYREI 152
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GYE L S + +D + + + +T++I G SG GKS+LINAL
Sbjct: 153 GYECLGISALTGKNIDKVKEMMTGKTSMISGHSGTGKSTLINAL---------------- 196
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
EP L D + ++ST+S +G+HTT + LS + DTPG ++++ K+
Sbjct: 197 EPTL------DLKTSKISTQSKQGQHTTTFAEMYDLSFDARIIDTPGIKGFGVVEIEKEE 250
Query: 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304
LA FPE + +C + NCLHL EP C VK W RY+ Y Q++
Sbjct: 251 LANYFPEFFAL-----KDQCKYYNCLHLEEPKCAVKDALEDGKVAWSRYKSYLQII 301
>gi|262037443|ref|ZP_06010906.1| ribosome small subunit-dependent GTPase A [Leptotrichia
goodfellowii F0264]
gi|261748533|gb|EEY35909.1| ribosome small subunit-dependent GTPase A [Leptotrichia
goodfellowii F0264]
Length = 308
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 45/295 (15%)
Query: 26 CVVRALLK--KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R LK K ++GD V ++ +I V +R + P ++N+D + +L
Sbjct: 41 CKLRGTLKVKNDKLNCIIGDIV-----EFDKNEKVITKVEKRKNFLYRPLLSNIDFIGIL 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYE-PLF 141
FS+ P + + L+ A IP L L+K++L+ +E L + + + +G P+F
Sbjct: 96 FSVITPNFDFTVFQKMLLNAGQQDIPAILILSKIDLISDEELQIFLNEIKENFGNTIPVF 155
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
SVE +GLD+LL ++ ++ + GPSG GKSSLIN +G
Sbjct: 156 PVSVEKNIGLDNLLSYIKGKSVTVSGPSGAGKSSLINTF-------------------IG 196
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLAQT 259
E E+S K+ RG+HTT + YL DTPGF+ K+ L
Sbjct: 197 ENILE---TNEISEKTSRGRHTTTESRFFKIYADTYLIDTPGFSTLDFPKLKEKKELELL 253
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
FPE E + +C F +CLH+ EPGC +K + E RY +Y + I
Sbjct: 254 FPEFSEYI-----LQCKFRDCLHINEPGCSIKENVENGNIPQMRYNFYLYSFENI 303
>gi|414159211|ref|ZP_11415501.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0441]
gi|410868208|gb|EKS16176.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0441]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPVVYISKMDLLGDRGELDFFQQTYRAIGYD----FVTSK---EELLPLLTAKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPE+ A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEV-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y + L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLRFLSEIENRRE 281
>gi|365967448|ref|YP_004949010.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|416076628|ref|ZP_11585625.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344966|ref|ZP_21153090.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348004768|gb|EGY45265.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|365746361|gb|AEW77266.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|443542440|gb|ELT52769.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 346
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 147/318 (46%), Gaps = 52/318 (16%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TELQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AVL--PHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-- 295
D+PG + L + + + + + E + +L C F +C HL +PGC ++ E
Sbjct: 263 IDSPGIREFGLWHLEDEQITRGYREFQTVL-----GTCKFRDCKHLNDPGCALRQAVEEG 317
Query: 296 -----RYQYYFQLLDEIR 308
RY+ Y +LL R
Sbjct: 318 KISAVRYENYHRLLTSRR 335
>gi|256843393|ref|ZP_05548881.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
125-2-CHN]
gi|312984160|ref|ZP_07791506.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
CTV-05]
gi|423318410|ref|ZP_17296287.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB049-03]
gi|423322015|ref|ZP_17299886.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB077-07]
gi|256614813|gb|EEU20014.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
125-2-CHN]
gi|310894379|gb|EFQ43455.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
CTV-05]
gi|405591469|gb|EKB64971.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB077-07]
gi|405596134|gb|EKB69491.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB049-03]
Length = 296
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 135/291 (46%), Gaps = 46/291 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 30 RGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVISA 85
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCS 143
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 86 VEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTDY 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 146 HEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA--------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 --NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVEF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
K+ C F C HL EPGC VK E RY+ Y + EI
Sbjct: 241 KK-----ASIHCKFRGCQHLQEPGCEVKKLLEAREILESRYEDYLAMRTEI 286
>gi|417687465|ref|ZP_12336735.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41301]
gi|418160722|ref|ZP_12797420.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17227]
gi|418167627|ref|ZP_12804279.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17971]
gi|419521934|ref|ZP_14061528.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05245]
gi|332072169|gb|EGI82655.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41301]
gi|353820905|gb|EHE01087.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17227]
gi|353828129|gb|EHE08273.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17971]
gi|379537414|gb|EHZ02598.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05245]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|380696911|ref|ZP_09861770.1| GTPase RsgA [Bacteroides faecis MAJ27]
Length = 310
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 120/253 (47%), Gaps = 40/253 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ L NKV+ DE+ L+ + ++
Sbjct: 85 AANLDQCMLVVTINYPETSTIFIDRFLASAEAYRVPVKLVFNKVDAYDEDELHYLDALIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S + G+D++ + L + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKVSAKKGTGVDTIKKELEGKITLFSGHSGVGKSTLINAILPGI------- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ + GE+ST +G HTT + + G GY+ DTPG
Sbjct: 198 ---------------ETKTGEISTYHNKGMHTTTFSEMFSVDGDGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ + FPEI ++ A C + NC H EPGC V+ E RY Y +
Sbjct: 243 MEEEEIGHYFPEIFKV-----SADCKYGNCTHRHEPGCAVREAVEKHLISESRYTSYLNM 297
Query: 304 LDEIRIREEFQLR 316
L++ REE + R
Sbjct: 298 LED---REEGKYR 307
>gi|375255070|ref|YP_005014237.1| ribosome small subunit-dependent GTPase A [Tannerella forsythia
ATCC 43037]
gi|363406684|gb|AEW20370.1| ribosome small subunit-dependent GTPase A [Tannerella forsythia
ATCC 43037]
Length = 310
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 150/337 (44%), Gaps = 72/337 (21%)
Query: 7 QSEPSRTSDCNDKTGVELLCVVRALLKKIKRR--VLVGDKVVV-------GSIDWVD--R 55
++ R+ DC K L K I+ V +GD+V + I +D R
Sbjct: 16 HTDDGRSVDCKIKGSFRL--------KGIRSTNPVTIGDRVEIEENREGSACITAIDARR 67
Query: 56 RGMIENV--FQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLA 113
MI + + IL AN+D LL+ ++ P+ + RFL AE+ GIP L
Sbjct: 68 NYMIRRASNLSKESHIL---AANIDLALLVVTIHYPQTTTTFIDRFLATAEAYGIPALLV 124
Query: 114 LNKVELVD-------EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVG 166
NK + D EE++ ++ T GY+ + S G+D+L ++ ++ T++ G
Sbjct: 125 FNKTDRYDADELEYVEELMTLYR----TIGYDCMKLCAASGEGIDALSDKISNRITLLSG 180
Query: 167 PSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226
SGVGKS++IN L PHA R ++S G HTT
Sbjct: 181 HSGVGKSTIINKLL--PHAK--------------------LRTKDISEYHQTGVHTTTFS 218
Query: 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286
++PL GGYL DTPG +++ +A FPEI + A C F+NC H EP
Sbjct: 219 EMIPLPNGGYLIDTPGIKGFGTIEMQGGEVAHYFPEIFK-----HSADCRFSNCTHTHEP 273
Query: 287 GCVVKGDWE-------RYQYYFQLLDEI---RIREEF 313
GC V+ E RY+ Y +L+++ + RE +
Sbjct: 274 GCAVREAVEAHSISRSRYKSYLNILEDMDGAKYREAY 310
>gi|401685065|ref|ZP_10816935.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. BS35b]
gi|418974360|ref|ZP_13522272.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK1074]
gi|383349264|gb|EID27210.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK1074]
gi|400183270|gb|EJO17527.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. BS35b]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
I + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKSIHPIVYISKMDLLEDRGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAIEEGAIATFRFDNYLQFLSEIENRRE 281
>gi|330998183|ref|ZP_08322009.1| ribosome small subunit-dependent GTPase A [Paraprevotella
xylaniphila YIT 11841]
gi|329568875|gb|EGG50673.1| ribosome small subunit-dependent GTPase A [Paraprevotella
xylaniphila YIT 11841]
Length = 310
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 110/243 (45%), Gaps = 37/243 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
ANVD L+ ++ P+ + RFL AE+ +P++L NK + D + L + +H
Sbjct: 85 AANVDQAFLIVTVSHPETSTTFIDRFLASAEAYRVPVSLVFNKTDCYDADDLRYMEGMMH 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY CS G+ +L + L +TT+ G SGVGKS+L+N L
Sbjct: 145 LYTTIGYPCHACSALQSTGIGALRESLEKRTTLFSGHSGVGKSTLLNKLI---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L + R E+S G HTT + L GGGY+ DTPG
Sbjct: 195 ------PDL------NLRTAEISAAHDTGMHTTTFSEMFSLPGGGYVIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
K+ +A F EI ++ A C +NNC H EPGC V+ E RY Y +
Sbjct: 243 FEKEEVAHYFREIFQI-----SADCKYNNCTHTHEPGCAVRRAVEEHLISESRYASYLNM 297
Query: 304 LDE 306
L++
Sbjct: 298 LED 300
>gi|283780737|ref|YP_003371492.1| ribosome small subunit-dependent GTPase A [Pirellula staleyi DSM
6068]
gi|283439190|gb|ADB17632.1| ribosome small subunit-dependent GTPase A [Pirellula staleyi DSM
6068]
Length = 375
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 139/299 (46%), Gaps = 47/299 (15%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDPP------- 73
++R +++ + + + VV + D V R G+IE + R+ +
Sbjct: 100 IIRCATRRVLKNLSTDQRHVVAAGDIVYYRPNGTSEGLIERIEPRANTLSRTSKGRQHVI 159
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VANVD +L++ S +P L+P + R +VEAE TGI + +NKV+LV+ L
Sbjct: 160 VANVDQVLIVASAAEPSLKPNLIDRMIVEAERTGIRPVVCINKVDLVEPSDLQPIAGVYG 219
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ L S + G+ L + + + TV+ G SGVGKSS++NA ++N
Sbjct: 220 QLGYDVLLLSAKENWGISRLRKLVAGKQTVVAGQSGVGKSSILNA------------IEN 267
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
RVG VS ++ +G+HTT L+PL+ GGY+ DTPG L +
Sbjct: 268 GLA----------LRVGRVSEENQKGRHTTTTAKLIPLAAGGYVVDTPGIRSFELWDIIP 317
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305
+ + +++ + C + +C HL E C VK D RY+ Y L +
Sbjct: 318 AEVIGYYRDLRPYV-----CLCRYPDCTHLHETDCAVKDAVADGRLDVRRYESYCYLFE 371
>gi|325298510|ref|YP_004258427.1| ribosome biogenesis GTPase RsgA [Bacteroides salanitronis DSM
18170]
gi|324318063|gb|ADY35954.1| ribosome biogenesis GTPase RsgA [Bacteroides salanitronis DSM
18170]
Length = 311
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 40/254 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ L NK +L E+ L + +H
Sbjct: 86 AANLDLCMLVVTVNYPETSTIFIDRFLASAEAYRVPVALVFNKTDLYSEDELRYLEGLIH 145
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S + G++ + + L+ + T+ G SGVGKS+LINA+ H
Sbjct: 146 LYTHIGYPCFRISALNNEGINEIKEELKGKITLFSGHSGVGKSTLINAILPEAHL----- 200
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ GE+ST +G HTT + P+ G GY+ DTPG
Sbjct: 201 -----------------KTGEISTAHNKGMHTTTFSEMFPVEGEGYIIDTPGIKGFGTFD 243
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ + ++ F EI E A C + NC H EPGC V+ E RY Y +
Sbjct: 244 MKDEEVSHYFKEIFEF-----SAHCKYGNCTHRHEPGCAVREAVENHYISESRYASYLNI 298
Query: 304 LDEIRIREEFQLRT 317
L++ REE + R
Sbjct: 299 LED---REEGKYRA 309
>gi|406027055|ref|YP_006725887.1| ribosome biogenesis GTPase [Lactobacillus buchneri CD034]
gi|405125544|gb|AFS00305.1| ribosome biogenesis GTPase [Lactobacillus buchneri CD034]
Length = 296
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 136/289 (47%), Gaps = 43/289 (14%)
Query: 36 KRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KR++ LVGD V D +G I + R ++ PP+AN+D ++ + QP+
Sbjct: 33 KRQITPLVGDDVEFQVEDG--DKGYILKMLPRKNSLVRPPIANIDQAIVATATTQPEFSS 90
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP----LFCSVESKLG 149
L R L+ E I + K +L+ E+ LN +K + P L + +
Sbjct: 91 NLLDRQLIALEIANIKPIIYFTKTDLLSEKQLNYFKDLAVAYANIPYDVILPEAAFDENS 150
Query: 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
L+ L Q + VI+G +G GKS+L+N L +P A
Sbjct: 151 LNHLRQLFSGKENVIMGQTGAGKSTLLNHL--APDLQLA--------------------T 188
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKA 269
GE+S RGKHTTR V+LL ++ GY+ADTPGF+ L++ + LA FPE K
Sbjct: 189 GEISAALNRGKHTTRKVALLRVN-DGYIADTPGFSSYDTLEIDYRQLASYFPEFKRA--- 244
Query: 270 NEPAKCSFNNCLHLGEPGCVVK-----GD--WERYQYYFQLLDEIRIRE 311
KC F C+H+ EP C VK GD RY+ Y QL +I+ R+
Sbjct: 245 --SVKCRFRGCVHVNEPDCEVKKEVASGDIMQSRYENYLQLYTDIKNRK 291
>gi|419496157|ref|ZP_14035873.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47461]
gi|421303655|ref|ZP_15754318.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17484]
gi|379593177|gb|EHZ57991.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47461]
gi|395899570|gb|EJH10510.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17484]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|395217438|ref|ZP_10401636.1| GTPase RsgA [Pontibacter sp. BAB1700]
gi|394454980|gb|EJF09542.1| GTPase RsgA [Pontibacter sp. BAB1700]
Length = 307
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 39/272 (14%)
Query: 43 DKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE 102
D V+ I+ DR I E AN+D LL+ ++ P+ + RFLV
Sbjct: 58 DTAVIHKIE--DRENYIIRKSTHKAEHAHIIAANLDQALLIATLVSPRTSFGFIDRFLVT 115
Query: 103 AESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRD 159
AE+ GIP + NK +L DE++ + + + GY+ + S + G+D L + L
Sbjct: 116 AEAYGIPTVIVYNKTDLYDEDMQEYQRQIAYLYERIGYKVMAVSAHTNEGIDELKELLHG 175
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T++ G SGVGKS+LIN + P L D + E+S S +G
Sbjct: 176 KTSLFSGHSGVGKSTLINLIV----------------PDL------DLKTSEISGFSDKG 213
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
HTT + ++ ++ DTPG + ++ + KQ L FPE++E L +C FNN
Sbjct: 214 VHTTTFAEMFEINPETFIIDTPGIKELGIVDIPKQELGHFFPEMRERLN-----QCRFNN 268
Query: 280 CLHLGEPGCVV-------KGDWERYQYYFQLL 304
C H EPGC + + RY+ Y +L
Sbjct: 269 CTHFNEPGCAIVEAVRKNEIALTRYESYLSML 300
>gi|392552531|ref|ZP_10299668.1| GTPase RsgA [Pseudoalteromonas spongiae UST010723-006]
Length = 351
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 41/278 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
++R +++ + ++ GD V+ + D G+IE V +R++++ P AN
Sbjct: 67 ILRCNIRRTIKSLVCGDNVIFRPAKVSEGDLAGVIELVEERTSQLTRPDFYDGVKVVAAN 126
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNKV+L+D+E + L +
Sbjct: 127 IDQILMVSAV-LPEFTPNIIDRYLVACEDMGIEPILVLNKVDLLDDEGIEYLDEVLDIYR 185
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ F S ++ G++ L L+D++++ VG SGVGKS+L+N+L P A+
Sbjct: 186 DIGYQVYFISNKTGQGVEELKALLKDKSSIFVGQSGVGKSTLVNSLL--PDAN------- 236
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
IL EVS SG G+HTT +L L+ GG L D+PG + L +
Sbjct: 237 ----ILTQ---------EVSEVSGLGQHTTTVSTLHHLASGGDLIDSPGIREFGLWHLEN 283
Query: 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
+ F E +E + C F +C HL +PGC+++
Sbjct: 284 DRVTWCFKEFREFI-----GGCKFRDCKHLDDPGCIIR 316
>gi|227878879|ref|ZP_03996784.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256849785|ref|ZP_05555216.1| GTPase [Lactobacillus crispatus MV-1A-US]
gi|262046516|ref|ZP_06019477.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
MV-3A-US]
gi|227861513|gb|EEJ69127.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256713274|gb|EEU28264.1| GTPase [Lactobacillus crispatus MV-1A-US]
gi|260572965|gb|EEX29524.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
MV-3A-US]
Length = 296
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 135/291 (46%), Gaps = 46/291 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 30 RGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVISA 85
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCS 143
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 86 VEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTDY 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 146 HEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA--------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 --NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVEF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
K+ C F C HL EPGC VK E RY+ Y + EI
Sbjct: 241 KK-----ASIHCKFRGCQHLQEPGCEVKKLLEAGEILESRYEDYLAMRTEI 286
>gi|418977277|ref|ZP_13525105.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK575]
gi|383350151|gb|EID28046.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK575]
Length = 292
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD V + + + G I + +R ++ PP+ N+D +++ S+
Sbjct: 26 ARGNFRKKGHTPYVGDLVDFSAEE--NSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D L+ ++ GY+ V S
Sbjct: 84 EPDFNSNLLDRFLVLLEHKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
K G LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 140 KEG---LLPLLTGKVTVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPEI
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI--- 230
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
A+ +C F C H EP C VK E R+ Y Q L EI R E
Sbjct: 231 --ASVSRECKFRTCTHTHEPSCAVKPAVEEGTIASFRFDNYLQFLSEIENRRE 281
>gi|392971820|ref|ZP_10337212.1| putative ribosome biogenesis GTPase RsgA [Staphylococcus equorum
subsp. equorum Mu2]
gi|403046856|ref|ZP_10902325.1| GTPase [Staphylococcus sp. OJ82]
gi|392509533|emb|CCI60502.1| putative ribosome biogenesis GTPase RsgA [Staphylococcus equorum
subsp. equorum Mu2]
gi|402763552|gb|EJX17645.1| GTPase [Staphylococcus sp. OJ82]
Length = 291
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 136/296 (45%), Gaps = 46/296 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD VV ++ + G I+ V R E+ P V+NVDHL+L+ S +
Sbjct: 28 RGLFRKNKFSPIVGD-VVDFEVENITE-GYIQYVHDRKNELKRPLVSNVDHLILVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P L RFLV A S + + + K +L E L+ + GY+ F S++
Sbjct: 86 PDFSTQLLDRFLVIAHSYHMRPRILITKRDLASVETQQKVTQLLNIYENMGYKTQFISID 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + + V+ G SGVGKS+L+N K+F
Sbjct: 146 DD--IEPVFAAWGEGLVVLSGQSGVGKSTLLN------------------------KYFP 179
Query: 206 DQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+ + +S RG+HTT H+ L S GY+ADTPGF+ + K L F EI
Sbjct: 180 ELNIETQHISKALNRGRHTTTHIELFERS-HGYIADTPGFSALDFTHIQKDELKNYFMEI 238
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
E KC F +C H+ EP C VK + E RY +Y QL +EI R+E
Sbjct: 239 NEY-----GEKCKFRDCNHINEPKCNVKNELENGNIAQFRYDHYLQLFNEIANRKE 289
>gi|418179110|ref|ZP_12815690.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41565]
gi|353841424|gb|EHE21480.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41565]
Length = 514
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|257126921|ref|YP_003165035.1| ribosome small subunit-dependent GTPase A [Leptotrichia buccalis
C-1013-b]
gi|257050860|gb|ACV40044.1| ribosome small subunit-dependent GTPase A [Leptotrichia buccalis
C-1013-b]
Length = 275
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 138/301 (45%), Gaps = 49/301 (16%)
Query: 26 CVVRALLK--KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R LK K ++GD V ++ ++ +IE + +R + P +AN+D + +L
Sbjct: 9 CKLRGTLKVKNDKMNCIIGDIV-----EFDEKEKVIEKIEKRKNFLYRPLIANIDFIGIL 63
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRL-HTWGYE 138
F++ P + + L+ A S IP L L+K++LV EE N +K T
Sbjct: 64 FAIKSPNFDFTNFQKMLLNANSQNIPAVLILSKIDLVSKEELEEFFNKFKQIFKETISIF 123
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
P+ S E+ G+ L Q + ++ VI GPSG GKS+LIN L E +
Sbjct: 124 PI--STETNTGITELQQYINKKSVVISGPSGAGKSTLINTLIG--------------EEV 167
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLA 257
L + +VS K+ +G+HTT + Y+ DTPGF+ K+ L
Sbjct: 168 LAT--------NDVSQKTKKGRHTTIESRFFMSAPHSYIIDTPGFSTLDFPKLEEKKELE 219
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD-------WERYQYYFQLLDEIRIR 310
+ FPE E + C F NC+H+ EP C +K + ERY +Y L IR
Sbjct: 220 KLFPEFLEFI-----PNCKFRNCIHVNEPNCAIKENVENSNISQERYDFYLYSLQNIRFN 274
Query: 311 E 311
+
Sbjct: 275 K 275
>gi|298208058|ref|YP_003716237.1| ribosome-associated GTPase [Croceibacter atlanticus HTCC2559]
gi|83850699|gb|EAP88567.1| ribosome-associated GTPase [Croceibacter atlanticus HTCC2559]
Length = 315
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 127/272 (46%), Gaps = 47/272 (17%)
Query: 54 DRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
D G+I+++ +R I+ V +NVD LL +++ P + RFLV A
Sbjct: 58 DTIGVIKDIEERENYIVRKSVNLSKQTHIIASNVDIAFLLVTLNNPPTFTTFIDRFLVTA 117
Query: 104 ESTGIPLTLALNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRLRDQ 160
E+ I L NK++ EE K +H T GY + S ++ L +D + + + ++
Sbjct: 118 EAYHINAILLFNKIDTYSEEEYGEVKYLMHLYKTIGYRCIEISAKTGLNIDEVKEVMTEK 177
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T++ G SGVGKS+L+NA+ + + + ++S +G+
Sbjct: 178 TSMFSGHSGVGKSTLVNAIEENL----------------------NLKTTKISESHSQGQ 215
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280
HTT + LS + DTPG ++ + K+ LA FPE E+ + C FNNC
Sbjct: 216 HTTTFAEMFDLSFDARIIDTPGIKGFGVVDIDKEELANYFPEFFEL-----KSGCKFNNC 270
Query: 281 LHLGEPGCVVKG-------DWERYQYYFQLLD 305
LH+ EP C VK W RY+ Y Q+L+
Sbjct: 271 LHINEPKCAVKDALEDGKVAWSRYKSYLQILE 302
>gi|332663997|ref|YP_004446785.1| ribosome biogenesis GTPase RsgA [Haliscomenobacter hydrossis DSM
1100]
gi|332332811|gb|AEE49912.1| ribosome biogenesis GTPase RsgA [Haliscomenobacter hydrossis DSM
1100]
Length = 315
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 133/290 (45%), Gaps = 49/290 (16%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEI----------LDPPVANVDHLLLLFSMDQ 88
+ VGD+V + ++ G+I+ V R + L +N+D LL+ ++
Sbjct: 42 IAVGDEVSL-EMENETGNGLIKGVLPRKNYVVRQSPHRKHELHLLASNIDQALLVTTITN 100
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+L+P + RFL+ E IP + NK +L D EV + GY + S +
Sbjct: 101 PRLKPGFIDRFLLMVEPYEIPTIIVFNKADLYEDADFEVFAYMEDLYQGLGYTVILASAK 160
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ L L+D+ T++ G SGVGKSSL+N +++S
Sbjct: 161 TGDGVEELKALLKDKVTMLSGQSGVGKSSLLNQIQASL---------------------- 198
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
D RVG++S SG+G+HTT + PL GG + DTPG + + +A F E
Sbjct: 199 DLRVGDISEYSGKGQHTTTFAEMHPLDFGGQIIDTPGIKTLGFIHLEPNQIAHNFREFFA 258
Query: 266 MLKANEPAKCSFNN-CLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+ ++C F CLH EP C VK E RY+ Y +L EI
Sbjct: 259 L-----SSQCRFGGACLHRNEPNCAVKAALEKEEISPLRYENYLYILQEI 303
>gi|227890680|ref|ZP_04008485.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|227867618|gb|EEJ75039.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
Length = 304
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 131/256 (51%), Gaps = 40/256 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 48 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 105
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVES---KLGLDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E+ + L++L+
Sbjct: 106 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 165
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P L + G++S
Sbjct: 166 DLTNEIVVVMGQTGAGKSTLLNDLK----------------PDL------NLETGKISKA 203
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK++L +P+ C
Sbjct: 204 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKETLPLMYPDF-----VKYQDNC 257
Query: 276 SFNNCLHLGEPGCVVK 291
F CLHL EP C VK
Sbjct: 258 KFRGCLHLKEPKCAVK 273
>gi|227890273|ref|ZP_04008078.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|227849087|gb|EEJ59173.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
Length = 297
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 138/294 (46%), Gaps = 50/294 (17%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDDQGMNYLIEILPRINEIGRPAVANVSRVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L ++ L + GY P+F
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKSDITSSERLKDIQTELEYYQRIGY-PVF- 142
Query: 143 SVESKLGLDSLLQRL--RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
E L++ L ++ +DQ + G SG GKS+L+N L S
Sbjct: 143 --EDAKKLENELPKMIDKDQIWTLAGQSGAGKSTLLNKLESEAK---------------- 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
Q G +ST RGKHTTR V+L G G++ADTPGF+ L K+ L F
Sbjct: 185 ------QATGAISTALNRGKHTTRQVTLFKY-GSGFIADTPGFSAIDLFKIKVDDLRNYF 237
Query: 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
++KE +C F C H+ EPGC VK E RY+ Y ++ EI
Sbjct: 238 YDLKEA-----SVECKFRGCQHIKEPGCEVKKLVEEGKIARSRYESYLKIRQEI 286
>gi|15901807|ref|NP_346411.1| ribosome-associated GTPase [Streptococcus pneumoniae TIGR4]
gi|15903840|ref|NP_359390.1| ribosome-associated GTPase [Streptococcus pneumoniae R6]
gi|111658870|ref|ZP_01409491.1| hypothetical protein SpneT_02000041 [Streptococcus pneumoniae
TIGR4]
gi|116516502|ref|YP_817203.1| ribosome-associated GTPase [Streptococcus pneumoniae D39]
gi|148985564|ref|ZP_01818753.1| ribosome-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|148998514|ref|ZP_01825955.1| ribosome-associated GTPase [Streptococcus pneumoniae SP11-BS70]
gi|149003644|ref|ZP_01828509.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|149007459|ref|ZP_01831102.1| ribosome-associated GTPase [Streptococcus pneumoniae SP18-BS74]
gi|168492041|ref|ZP_02716184.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC0288-04]
gi|168494775|ref|ZP_02718918.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC3059-06]
gi|168576616|ref|ZP_02722482.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
MLV-016]
gi|221232708|ref|YP_002511862.1| GTPase EngC [Streptococcus pneumoniae ATCC 700669]
gi|225855473|ref|YP_002736985.1| ribosome-associated GTPase [Streptococcus pneumoniae JJA]
gi|225859739|ref|YP_002741249.1| ribosome-associated GTPase [Streptococcus pneumoniae 70585]
gi|237651001|ref|ZP_04525253.1| ribosome-associated GTPase [Streptococcus pneumoniae CCRI 1974]
gi|237822559|ref|ZP_04598404.1| ribosome-associated GTPase [Streptococcus pneumoniae CCRI 1974M2]
gi|307068592|ref|YP_003877558.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|387758156|ref|YP_006065135.1| GTPase EngC [Streptococcus pneumoniae OXC141]
gi|415700639|ref|ZP_11458173.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
459-5]
gi|415750272|ref|ZP_11478186.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV35]
gi|415753185|ref|ZP_11480167.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV36]
gi|417677688|ref|ZP_12327093.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17545]
gi|417699357|ref|ZP_12348527.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41317]
gi|418074827|ref|ZP_12712075.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11184]
gi|418077199|ref|ZP_12714430.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47502]
gi|418079428|ref|ZP_12716649.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4027-06]
gi|418081627|ref|ZP_12718835.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6735-05]
gi|418090349|ref|ZP_12727501.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43265]
gi|418099313|ref|ZP_12736408.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6901-05]
gi|418106116|ref|ZP_12743170.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44500]
gi|418113319|ref|ZP_12750317.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41538]
gi|418115502|ref|ZP_12752487.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5787-06]
gi|418117660|ref|ZP_12754628.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6963-05]
gi|418124342|ref|ZP_12761271.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44378]
gi|418128877|ref|ZP_12765768.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP170]
gi|418131143|ref|ZP_12768025.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07643]
gi|418135760|ref|ZP_12772612.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11426]
gi|418138088|ref|ZP_12774924.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11663]
gi|418147225|ref|ZP_12783999.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13637]
gi|418149321|ref|ZP_12786082.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13856]
gi|418155944|ref|ZP_12792669.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16242]
gi|418163016|ref|ZP_12799696.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17328]
gi|418174402|ref|ZP_12811012.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41277]
gi|418183526|ref|ZP_12820082.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43380]
gi|418187970|ref|ZP_12824491.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47360]
gi|418194529|ref|ZP_12831017.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47439]
gi|418200954|ref|ZP_12837395.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47976]
gi|418217434|ref|ZP_12844112.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418226342|ref|ZP_12852968.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP112]
gi|418230769|ref|ZP_12857367.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP01]
gi|418232965|ref|ZP_12859550.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07228]
gi|418237419|ref|ZP_12863984.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19690]
gi|419432373|ref|ZP_13972501.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP05]
gi|419434603|ref|ZP_13974719.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40183]
gi|419441175|ref|ZP_13981217.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40410]
gi|419441929|ref|ZP_13981964.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13224]
gi|419454034|ref|ZP_13994003.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP03]
gi|419458538|ref|ZP_13998479.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02254]
gi|419465344|ref|ZP_14005234.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04175]
gi|419467642|ref|ZP_14007522.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05248]
gi|419469785|ref|ZP_14009651.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA06083]
gi|419471862|ref|ZP_14011720.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07914]
gi|419474058|ref|ZP_14013905.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13430]
gi|419478629|ref|ZP_14018451.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18068]
gi|419498356|ref|ZP_14038060.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47522]
gi|419504702|ref|ZP_14044368.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47760]
gi|419506849|ref|ZP_14046509.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49194]
gi|419513365|ref|ZP_14052997.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05578]
gi|419517571|ref|ZP_14057185.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02506]
gi|419524413|ref|ZP_14063985.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13723]
gi|419526704|ref|ZP_14066259.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14373]
gi|419535467|ref|ZP_14074964.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17457]
gi|421207466|ref|ZP_15664514.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2090008]
gi|421211823|ref|ZP_15668804.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070035]
gi|421230588|ref|ZP_15687249.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061376]
gi|421232663|ref|ZP_15689303.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080076]
gi|421234892|ref|ZP_15691508.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061617]
gi|421237073|ref|ZP_15693667.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071004]
gi|421239304|ref|ZP_15695867.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071247]
gi|421242349|ref|ZP_15698874.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081074]
gi|421245754|ref|ZP_15702251.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081685]
gi|421246110|ref|ZP_15702601.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082170]
gi|421250240|ref|ZP_15706694.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082239]
gi|421266959|ref|ZP_15717838.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR27]
gi|421271411|ref|ZP_15722263.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR48]
gi|421281975|ref|ZP_15732770.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04672]
gi|421284116|ref|ZP_15734900.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04216]
gi|421290535|ref|ZP_15741284.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54354]
gi|421299450|ref|ZP_15750136.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60080]
gi|421305925|ref|ZP_15756578.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62331]
gi|421310387|ref|ZP_15761011.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62681]
gi|421312737|ref|ZP_15763336.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58981]
gi|421314838|ref|ZP_15765424.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47562]
gi|54037065|sp|P67685.1|RSGA_STRR6 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|54041062|sp|P67684.1|RSGA_STRPN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|14973491|gb|AAK76051.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
TIGR4]
gi|15459483|gb|AAL00601.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077078|gb|ABJ54798.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
D39]
gi|147755707|gb|EDK62753.1| ribosome-associated GTPase [Streptococcus pneumoniae SP11-BS70]
gi|147758376|gb|EDK65376.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|147761031|gb|EDK68000.1| ribosome-associated GTPase [Streptococcus pneumoniae SP18-BS74]
gi|147922284|gb|EDK73405.1| ribosome-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|183573685|gb|EDT94213.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC0288-04]
gi|183575318|gb|EDT95846.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC3059-06]
gi|183577661|gb|EDT98189.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
MLV-016]
gi|220675170|emb|CAR69754.1| probable GTPase EngC [Streptococcus pneumoniae ATCC 700669]
gi|225720118|gb|ACO15972.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
70585]
gi|225722996|gb|ACO18849.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
JJA]
gi|301800745|emb|CBW33393.1| probable GTPase EngC [Streptococcus pneumoniae OXC141]
gi|306410129|gb|ADM85556.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|332071961|gb|EGI82449.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17545]
gi|332199298|gb|EGJ13376.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41317]
gi|353745943|gb|EHD26608.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11184]
gi|353746048|gb|EHD26712.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4027-06]
gi|353746145|gb|EHD26808.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47502]
gi|353750753|gb|EHD31390.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6735-05]
gi|353760270|gb|EHD40848.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43265]
gi|353768083|gb|EHD48609.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6901-05]
gi|353774988|gb|EHD55472.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44500]
gi|353782250|gb|EHD62686.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41538]
gi|353784004|gb|EHD64426.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5787-06]
gi|353787775|gb|EHD68176.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6963-05]
gi|353794676|gb|EHD75029.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44378]
gi|353797751|gb|EHD78083.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP170]
gi|353801369|gb|EHD81673.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07643]
gi|353811104|gb|EHD91350.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13856]
gi|353811153|gb|EHD91398.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13637]
gi|353819650|gb|EHD99842.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16242]
gi|353826294|gb|EHE06453.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17328]
gi|353836899|gb|EHE16986.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41277]
gi|353847530|gb|EHE27552.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43380]
gi|353848851|gb|EHE28862.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47360]
gi|353857040|gb|EHE37005.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47439]
gi|353863521|gb|EHE43444.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47976]
gi|353869922|gb|EHE49801.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353879908|gb|EHE59729.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP112]
gi|353884891|gb|EHE64684.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP01]
gi|353885648|gb|EHE65436.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07228]
gi|353891114|gb|EHE70872.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19690]
gi|353900080|gb|EHE75641.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11663]
gi|353900382|gb|EHE75938.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11426]
gi|379529421|gb|EHY94668.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02254]
gi|379536218|gb|EHZ01408.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04175]
gi|379542555|gb|EHZ07711.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05248]
gi|379543314|gb|EHZ08465.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA06083]
gi|379544107|gb|EHZ09253.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07914]
gi|379549686|gb|EHZ14790.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13430]
gi|379555425|gb|EHZ20494.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13224]
gi|379555780|gb|EHZ20845.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13723]
gi|379556193|gb|EHZ21249.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14373]
gi|379562668|gb|EHZ27678.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17457]
gi|379563907|gb|EHZ28905.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18068]
gi|379575307|gb|EHZ40240.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40183]
gi|379576460|gb|EHZ41385.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40410]
gi|379598249|gb|EHZ63042.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47522]
gi|379604804|gb|EHZ69559.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47760]
gi|379605013|gb|EHZ69766.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49194]
gi|379624711|gb|EHZ89341.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP03]
gi|379627749|gb|EHZ92359.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP05]
gi|379634530|gb|EHZ99095.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05578]
gi|379637863|gb|EIA02413.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02506]
gi|381308832|gb|EIC49675.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV36]
gi|381314023|gb|EIC54800.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
459-5]
gi|381316818|gb|EIC57562.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV35]
gi|395572209|gb|EJG32809.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070035]
gi|395573038|gb|EJG33630.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2090008]
gi|395593092|gb|EJG53345.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061376]
gi|395594010|gb|EJG54251.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080076]
gi|395599509|gb|EJG59675.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061617]
gi|395600072|gb|EJG60231.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071247]
gi|395601034|gb|EJG61187.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071004]
gi|395606789|gb|EJG66890.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081685]
gi|395611480|gb|EJG71552.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081074]
gi|395612804|gb|EJG72840.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082239]
gi|395616229|gb|EJG76240.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082170]
gi|395866055|gb|EJG77188.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR27]
gi|395866161|gb|EJG77293.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR48]
gi|395879481|gb|EJG90540.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04672]
gi|395879907|gb|EJG90963.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04216]
gi|395886264|gb|EJG97281.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54354]
gi|395899465|gb|EJH10406.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60080]
gi|395904354|gb|EJH15271.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62331]
gi|395908062|gb|EJH18946.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58981]
gi|395908572|gb|EJH19450.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62681]
gi|395912466|gb|EJH23325.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47562]
gi|429320125|emb|CCP33456.1| probable GTPase EngC [Streptococcus pneumoniae SPN034183]
gi|429321944|emb|CCP35430.1| probable GTPase EngC [Streptococcus pneumoniae SPN994039]
gi|429323764|emb|CCP31471.1| probable GTPase EngC [Streptococcus pneumoniae SPN994038]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|317056482|ref|YP_004104949.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 7]
gi|315448751|gb|ADU22315.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 7]
Length = 293
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 140/302 (46%), Gaps = 45/302 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG-MIENVFQRSTEILDPPVANVDHLLLLF 84
C R + +K K + GD VV+ D+ G +IE + R +E++ PP+AN+D L+ +
Sbjct: 24 CKARGIFRKKKISPMCGDNVVITE----DKDGCVIEEILPRRSELIRPPLANLDLLVFVS 79
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
S +P+ L +F+ AE I + KV D+ + + + G + C
Sbjct: 80 STIEPRPNTLLLDKFIAIAEFKKIKPVVVFTKV---DKRSGDELAAVYRSVGIDVFECDN 136
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G + L+ + + G +GVGKSSL+N + P LG
Sbjct: 137 VTGEGSAEVRAALQGKLSAFTGNTGVGKSSLLNNMY----------------PELG---- 176
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK---VTKQSLAQTFP 261
GE+S K GRG+HTTRHV L L GGGY+ADTPGF+ + + K LA F
Sbjct: 177 --LATGEISKKLGRGRHTTRHVQLYKLEGGGYIADTPGFSSFDTNRYDIIFKDKLADCFI 234
Query: 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWERYQYYFQLLDEIRIREEFQ 314
E E KC F +C H E GC V K R++ Y Q+ ++ + +E++
Sbjct: 235 EFSEYTD-----KCRFPDCSHTKEKGCAVIEAVEAGKIPRSRFESYVQMYEDAKQLKEWE 289
Query: 315 LR 316
+
Sbjct: 290 YK 291
>gi|152989875|ref|YP_001355597.1| ribosome-associated GTPase [Nitratiruptor sp. SB155-2]
gi|151421736|dbj|BAF69240.1| ribosome-associated GTPase [Nitratiruptor sp. SB155-2]
Length = 289
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 41/283 (14%)
Query: 31 LLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPK 90
L KK+K+ + V G I VD + +IE++ R + PPVANVD++L++ +M P
Sbjct: 30 LRKKVKKEKIYAGDYVKGEI--VDNQFVIESIEPRRNLLTRPPVANVDNVLVVMAMKTPD 87
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESKLG 149
+ + L FL E GI + NK++L++E+ RL+ + GYE + S ++ G
Sbjct: 88 FDSYLLDNFLAVYEFKGIEPVIVFNKIDLLEEKEELEKWMRLYSSVGYETIAISAQNSDG 147
Query: 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
++ + ++ T++ GPSG GKS+L++ L LG + +
Sbjct: 148 IEKIKSYIQGDITIVAGPSGAGKSTLLSRL-------------------LGV----EIKT 184
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSLAQTFPEIKEMLK 268
G+V+ K GRG+HTT V+L +LADTPGF++ + + K+ + + F KE L+
Sbjct: 185 GQVNKKIGRGRHTTTAVTLYRFDNSSFLADTPGFSKVEASYFMDKKEVHRYF---KEFLR 241
Query: 269 ANEPAKCSFNNCLHLGEPGCVVK-----GD--WERYQYYFQLL 304
C + +C H EPGC VK G+ ER++ Y +++
Sbjct: 242 YT----CKYPDCTHTNEPGCAVKEAVLRGEIACERFKNYLKIM 280
>gi|149377733|ref|ZP_01895467.1| ribosome-associated GTPase [Marinobacter algicola DG893]
gi|149357959|gb|EDM46447.1| ribosome-associated GTPase [Marinobacter algicola DG893]
Length = 351
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 141/291 (48%), Gaps = 61/291 (20%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMIENVFQRSTEI------- 69
TG L C VRA + + + GDKV+ W D G+I R T +
Sbjct: 67 TGKVLRCFVRANIDSL----VTGDKVI-----WRPGSDNTGVIVARCDRHTLLQRPDNFG 117
Query: 70 -LDPPVANVDHLLLLFSMDQPKLEPF--ALTRFLVEAESTGIPLTLALNKVELV---DEE 123
L P AN+D+++L+ + P+ EP + R+LV AEST IP+ + LNK +LV + +
Sbjct: 118 ALKPVAANIDYIILVIA---PEPEPHDNLIDRYLVAAESTDIPVIILLNKTDLVTDQNRD 174
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD----QTTVIVGPSGVGKSSLINAL 179
++ +R GY S ++ G ++ R+ D QT+V VG SGVGKSS+I L
Sbjct: 175 AIDRLLARYEKLGYRIERTSAKTLEGEQAV--RVEDLVKGQTSVFVGQSGVGKSSIIQTL 232
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
P AS RVG VS +G+G HTT L L+ GG L D
Sbjct: 233 L--PEAS--------------------IRVGAVSESTGKGVHTTTTAKLFHLNCGGDLID 270
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
+PG + L +T Q + F EI++++ C F NC H+G+PGC +
Sbjct: 271 SPGIREFGLWHMTPQEIEYGFREIRDLI-----GHCKFRNCSHMGDPGCAI 316
>gi|293380315|ref|ZP_06626389.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
214-1]
gi|290923130|gb|EFE00059.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
214-1]
Length = 296
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 135/291 (46%), Gaps = 46/291 (15%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 30 RGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVISA 85
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCS 143
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 86 VEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTDY 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 146 HEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA--------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI 263
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 --NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVEF 240
Query: 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
K+ C F C HL EPGC VK E RY+ Y + EI
Sbjct: 241 KK-----ASIHCKFRGCQHLQEPGCEVKKLLEAGEILASRYEDYLAMRTEI 286
>gi|251783337|ref|YP_002997642.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391969|dbj|BAH82428.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKSIHPVIYISKMDLLDSPEEIEAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|71902883|ref|YP_279686.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS6180]
gi|94991738|ref|YP_599837.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS2096]
gi|94993614|ref|YP_601712.1| ribosome-associated GTPase [Streptococcus pyogenes MGAS10750]
gi|408402422|ref|YP_006860386.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|417857545|ref|ZP_12502604.1| GTPase RsgA [Streptococcus pyogenes HKU QMH11M0907901]
gi|71801978|gb|AAX71331.1| GTPase [Streptococcus pyogenes MGAS6180]
gi|94545246|gb|ABF35293.1| GTPase [Streptococcus pyogenes MGAS2096]
gi|94547122|gb|ABF37168.1| GTPase [Streptococcus pyogenes MGAS10750]
gi|387934500|gb|EIK42613.1| GTPase RsgA [Streptococcus pyogenes HKU QMH11M0907901]
gi|407968651|dbj|BAM61889.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLAD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|386317773|ref|YP_006013937.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417752261|ref|ZP_12400483.1| ribosome small subunit-dependent GTPase A [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323128060|gb|ADX25357.1| ribosome-associated GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771983|gb|EGL48874.1| ribosome small subunit-dependent GTPase A [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD V + D + G I + R ++ PP+ N+D +++ S +P+ L RFL
Sbjct: 39 VGDIVDFSAED--NSEGYILAIHPRKNSLVRPPIVNIDQAVVIMSAKEPEFNSNLLDRFL 96
Query: 101 VEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ E I + ++K++L+D E + + GY+ F + L+ LL L D
Sbjct: 97 ILLEHKAIHPVVYISKMDLLDSPEEIKAIGRQYQAIGYD--FVT-----SLEELLPLLTD 149
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ TV +G +GVGKS+L+N R +P + GE+S GRG
Sbjct: 150 KITVFMGQTGVGKSTLLN--RIAPELA--------------------LETGEISDSLGRG 187
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279
+HTTR VS + GG +ADTPGF+ + L + FPE++ + +C F +
Sbjct: 188 RHTTRAVSFYN-THGGKIADTPGFSSLDYDIANAEDLNEAFPELRRL-----SHECKFRS 241
Query: 280 CLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
C H EP C VK E RY++Y Q L EI R E
Sbjct: 242 CTHTHEPKCAVKAALETGELWPVRYEHYLQFLSEIENRRE 281
>gi|449979344|ref|ZP_21816605.1| ribosome-associated GTPase [Streptococcus mutans 5SM3]
gi|449178087|gb|EMB80365.1| ribosome-associated GTPase [Streptococcus mutans 5SM3]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EP C VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPECAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|450133671|ref|ZP_21870724.1| ribosome-associated GTPase [Streptococcus mutans NLML8]
gi|449150686|gb|EMB54443.1| ribosome-associated GTPase [Streptococcus mutans NLML8]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGHKPYVGDEVDFSAKE--NSEGYILAIHERKNSLVRPPIVNIDQAVVIISAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFL+ E I + L+K +L+ D + + + GY ++
Sbjct: 84 EPDFNHNLLDRFLILLEHRKISPIIYLSKTDLLEDLDEFKKVQKQYQKIGYYFVYY---- 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L+ L L+D+ TV +G +GVGK++L+N L A D A N
Sbjct: 140 ---LEDLTPLLKDKITVFMGQTGVGKTTLLNTL-----APDLALETN------------- 178
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
E+S GRG+HTTR V+L + GG +ADTPGF+ + + L FPE+ ++
Sbjct: 179 ----EISDSLGRGRHTTRAVTLYNIYGGK-IADTPGFSSLDYEITSSEELNAAFPELLKL 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVVKGD------WE-RYQYYFQLLDEIRIREE 312
A C F +C H EP C VK WE RYQ Y Q+L EI R E
Sbjct: 234 -----SAACKFRSCTHTHEPECAVKSALAQRKIWEKRYQTYLQILSEIENRRE 281
>gi|421228270|ref|ZP_15684967.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2072047]
gi|395592991|gb|EJG53245.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2072047]
Length = 514
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 128/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ + L Q FPEI A C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEI-----ATVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGVIATFRFDNYLQFLSEIENRRE 281
>gi|384097541|ref|ZP_09998662.1| GTPase RsgA [Imtechella halotolerans K1]
gi|383837509|gb|EID76909.1| GTPase RsgA [Imtechella halotolerans K1]
Length = 318
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 37/242 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D + LL +++ P + RFLV AE+ + L NK++ ++ L K H
Sbjct: 88 AANLDQVFLLVTLNNPPTFTAFIDRFLVTAEAYHVKAILLFNKIDTYTKDELAEIKYLAH 147
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T+ GYE L S + +D + ++ + ++ G SGVGKS+LINAL
Sbjct: 148 TYRKIGYECLGISAITGHNIDKVKALMKGKVSMFSGHSGVGKSTLINAL----------- 196
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
EP LG K +S + +G+HTT ++ LS G + DTPG ++
Sbjct: 197 -----EPGLGLK------TASISEQHKQGQHTTTFAEMIDLSFGAQIIDTPGIKGFGIVD 245
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL 303
+ K+ + FPE + A C FNNCLH+ EP C VK W RY+ Y Q+
Sbjct: 246 MDKEEIGDYFPEFFALKHA-----CKFNNCLHIDEPKCAVKQALEDNEIAWSRYRSYIQM 300
Query: 304 LD 305
L+
Sbjct: 301 LE 302
>gi|288906191|ref|YP_003431413.1| ATP/GTP binding protein [Streptococcus gallolyticus UCN34]
gi|306832234|ref|ZP_07465388.1| ribosome small subunit-dependent GTPase A [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|386338633|ref|YP_006034802.1| ribosome biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732917|emb|CBI14496.1| conserved ATP/GTP binding protein [Streptococcus gallolyticus
UCN34]
gi|304425673|gb|EFM28791.1| ribosome small subunit-dependent GTPase A [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|334281269|dbj|BAK28843.1| ribosome biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 45/300 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV + + + + GY+
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLVTTPDEIRGIQRQYQEIGYQ- 135
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
FC+ L+ LL L D+ TV +G +GVGKS+L+N + P L
Sbjct: 136 -FCT-----SLEELLPLLTDKVTVFMGQTGVGKSTLLNKI----------------APEL 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VS ++GG +ADTPGF+ + L +
Sbjct: 174 ------KLETGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLNEA 226
Query: 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK-----GD-WE-RYQYYFQLLDEIRIREE 312
FPE++ + C F +C H EP C VK GD W+ RY Y Q L EI R E
Sbjct: 227 FPELRHL-----SHYCKFRSCTHTHEPSCAVKEGLESGDLWQSRYDNYLQFLSEIENRRE 281
>gi|387815065|ref|YP_005430552.1| ribosome small subunit-dependent GTPase A [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340082|emb|CCG96129.1| ribosome small subunit-dependent GTPase A [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 346
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 139/295 (47%), Gaps = 57/295 (19%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMI------ENVFQRSTEI 69
++G C VRA + + + GD+VV W + G+I EN+ QR
Sbjct: 61 ESGQVFRCFVRANIDSL----VTGDRVV-----WRPGKSKTGVIVARCERENLLQRPDNF 111
Query: 70 --LDPPVANVDHLLLLFSMDQPKLEPF--ALTRFLVEAESTGIPLTLALNKVELVDEEV- 124
L P AN+DH++L+ + P+ EP + R+LV +ES+ IP + LNK +L++++
Sbjct: 112 GALKPVAANIDHIILVIA---PEPEPHDNLIDRYLVASESSDIPAVILLNKTDLINDDKR 168
Query: 125 --LNTWKSRLHTWGYEPLFCSVESKLGLDS--LLQRLRDQTTVIVGPSGVGKSSLINALR 180
+ +R GYE S G + + +R+QT+V VG SGVGKSS+I L
Sbjct: 169 DQIEALLARYQALGYEVARTSAAETAGTPAPEVEALVRNQTSVFVGQSGVGKSSIIQTLL 228
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
E RVG VS +G+G HTT L L GGG L D+
Sbjct: 229 PD----------------------ELLRVGAVSESTGKGVHTTTTAKLFHLPGGGDLIDS 266
Query: 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295
PG + L +T Q + F EI+ ++ C F NC H+G+PGC + E
Sbjct: 267 PGIREFGLWHMTPQEVEYGFREIRPLI-----GLCKFRNCRHMGDPGCALDAAAE 316
>gi|418961225|ref|ZP_13513112.1| GTPase [Lactobacillus salivarius SMXD51]
gi|380344892|gb|EIA33238.1| GTPase [Lactobacillus salivarius SMXD51]
Length = 296
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 40/256 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+ANVD +++ + +P P L R
Sbjct: 40 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANVDTAIVVSACVEPDFSPNLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVES---KLGLDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E+ + L++L+
Sbjct: 98 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 157
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P S G++S
Sbjct: 158 DLTNEIVVVMGQTGAGKSTLLNDLK--PDLS--------------------LETGKISKA 195
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+ C
Sbjct: 196 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPDF-----VKYQDNC 249
Query: 276 SFNNCLHLGEPGCVVK 291
F CLHL EP C VK
Sbjct: 250 KFRGCLHLKEPKCAVK 265
>gi|339056132|ref|ZP_08648668.1| Ribosome small subunit-stimulated GTPase EngC [gamma
proteobacterium IMCC2047]
gi|330720660|gb|EGG98908.1| Ribosome small subunit-stimulated GTPase EngC [gamma
proteobacterium IMCC2047]
Length = 335
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 135/282 (47%), Gaps = 55/282 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMIENVFQRSTEI--------LDPPV 74
C +RA L I + GD+V+ W +D+ G+I V +R +E+ L P
Sbjct: 69 CRLRANLGSI----VTGDRVI-----WRPAIDQGGVIVAVTERDSELSRPDARGNLRPVA 119
Query: 75 ANVDHLLLLFSMDQPKLEPFALT-RFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D L+ L +P+ PF L R+LV AE+ GI + +NK +L + + W +
Sbjct: 120 ANID-LIFLVIAAEPRT-PFGLIDRYLVAAENIGIRPAILINKADLKSADAI-AWTQEIQ 176
Query: 134 ----TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
GY + S +S+ GL+ L +R T++ VG SGVGK+SL+N L
Sbjct: 177 NIYSAIGYSIIATSTQSETGLNELKSAMRGHTSIFVGQSGVGKTSLVNRLL--------- 227
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
P +G+ RVG +S +G+G HTT L L GGG + D+PG + L
Sbjct: 228 -------PQVGA------RVGPLSESTGKGMHTTTTAQLFHLPGGGNIFDSPGIREFGLG 274
Query: 250 KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291
V +Q L F E L +C F +C HL EP C ++
Sbjct: 275 HVDQQQLMDGFIEFHPFL-----GRCKFRDCKHLHEPQCAIQ 311
>gi|116618604|ref|YP_818975.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
gi|122271196|sp|Q03W20.1|RSGA_LEUMM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|116097451|gb|ABJ62602.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 295
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 46/290 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K++ LVGD V + + G I + +R ++ PP+AN+D +++ +
Sbjct: 28 ARGEFRKSKQKPLVGDFV---DFESENDEGFIWAIHERENFLVRPPIANIDIAVIVTAAK 84
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
+P P L R LV E+ + + +K++L+++ E +N + + GY+ +F
Sbjct: 85 EPDFAPNLLDRQLVALEAANVRPLIYFSKMDLLEKSEHEKINHVANYYQSIGYDVIFS-- 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+SK ++L L+D +V +G +G GKS+L+N L P LG +
Sbjct: 143 DSKSAFEALKMMLKDHVSVFMGQTGAGKSTLLNHL----------------SPQLGLE-- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
GEVS RGKHTTR V+L+ + +ADTPGF+ + + L FPE
Sbjct: 185 ----TGEVSKALSRGKHTTRQVTLIEVD-EALIADTPGFSSYEVFDFPVEELDDYFPEFV 239
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLL 304
E + C F CLHL EPGC +K + Y+ +++L+
Sbjct: 240 EKRQ-----DCRFRGCLHLNEPGCAIKEAVAVGTITQSRYNSYKAFYELI 284
>gi|423305202|ref|ZP_17283201.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T00C23]
gi|423311022|ref|ZP_17288991.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T12C37]
gi|392680054|gb|EIY73428.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T12C37]
gi|392682056|gb|EIY75406.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T00C23]
Length = 297
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 40/254 (15%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ + NKV+ DEE L+ S ++
Sbjct: 72 AANLDQCMLIVTVNYPETSTTFIDRFLASAEAYRVPVKIIFNKVDAYDEEELHYLDSLIN 131
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY S G+D++ + L+ + T+ G SGVGKS+LI A+ D
Sbjct: 132 LYTTIGYPCFKVSARKGEGIDTIEKELKGRITLFSGHSGVGKSTLIKAI--------LPD 183
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++ + GE+ST +G HTT + P+ G GY+ DTPG
Sbjct: 184 IE--------------IKTGEISTYHNKGMHTTTFSEMFPVPGNGYIIDTPGIKGFGTFD 229
Query: 251 VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQL 303
+ ++ + FPEI ++ A C + NC H EPGC V+ E RY Y +
Sbjct: 230 MEEEEIGHYFPEIFKV-----SADCRYGNCTHRHEPGCAVREAVEKHYISESRYASYLNM 284
Query: 304 LDEIRIREEFQLRT 317
L++ +EE + R
Sbjct: 285 LED---KEEGKYRA 295
>gi|325281141|ref|YP_004253683.1| ribosome biogenesis GTPase RsgA [Odoribacter splanchnicus DSM
20712]
gi|324312950|gb|ADY33503.1| ribosome biogenesis GTPase RsgA [Odoribacter splanchnicus DSM
20712]
Length = 305
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 118/258 (45%), Gaps = 40/258 (15%)
Query: 62 VFQRSTEILDPP---VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
+ +RST + ANVD LL+ +++ P + RFLV AE+ IP L NK +
Sbjct: 70 IIRRSTNLSKESHIIAANVDLALLVVTVNHPVTSTVFIDRFLVTAEAYNIPAVLVFNKTD 129
Query: 119 LVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
L D E +L GY S E+ +D + L+D+ TV+ G SGVGKSSL
Sbjct: 130 LYDAEDQAMLGGLTVIYRKIGYPCYAVSAETGEHVDEIRSLLKDKITVLSGLSGVGKSSL 189
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+N + EP L D + +S GKHTT + PL GG
Sbjct: 190 VNCI----------------EPGL------DLKTAGISDAHDSGKHTTTFAEMFPLKQGG 227
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295
++ DTPG ++ + K+ L+ FPEI K+ E C F NC H EPGC V E
Sbjct: 228 FIIDTPGLRSFGIIDLKKEELSHFFPEI--FAKSGE---CRFYNCTHTHEPGCAVLEAVE 282
Query: 296 -------RYQYYFQLLDE 306
RY Y +++E
Sbjct: 283 QDEISESRYVSYLSMMEE 300
>gi|429749501|ref|ZP_19282620.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 332 str. F0381]
gi|429168038|gb|EKY09899.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 332 str. F0381]
Length = 312
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 146/329 (44%), Gaps = 53/329 (16%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRAL--LKKIKRR--VLVGDKVVVGSIDWVDRR 56
MR +V +S S + + +GV C ++ LK IK V VGD V + + +
Sbjct: 1 MRGLVYKSTGSWYTVKEENSGVFYQCRIKGKMRLKGIKNTNPVAVGDYVAFQQEEGL--Q 58
Query: 57 GMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
G+I V +R I+ V AN+D L+ +++ P + RFLV AE+
Sbjct: 59 GVITAVEERQNYIIRKSVNLSKQTHIIAANIDLAFLVVTLNNPPTSTTFIDRFLVTAEAY 118
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTV 163
I L NKV+ + L K + GYE + S + ++ + + +R +T V
Sbjct: 119 SIKTVLLFNKVDTYTPDELAEVKYLAQLYRKVGYECIGISATTGKNIEKVKETMRGKTCV 178
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+ G SG GKS+LINA+ P L K GE+S + +G+HTT
Sbjct: 179 VSGHSGAGKSTLINAI----------------APQLALK------TGEISLQHQQGQHTT 216
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
+ L G ++ DTPG ++++ K L FPE + C FNNCLH
Sbjct: 217 TFAEMFDLPFGAHIIDTPGIKGFGMVEIDKHELTDYFPEFFAL-----KEDCKFNNCLHT 271
Query: 284 GEPGCVVKG-------DWERYQYYFQLLD 305
EP C VK W RY+ Y Q+L+
Sbjct: 272 DEPHCAVKEALENDEIAWSRYKSYLQILE 300
>gi|406914548|gb|EKD53716.1| hypothetical protein ACD_60C00160G0038 [uncultured bacterium]
Length = 309
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 149/311 (47%), Gaps = 52/311 (16%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV-------VGSI-DWVDRRGMIENVFQR 65
+D D+ G + C VR K ++ GD++ G+I R+ ++ +
Sbjct: 32 ADIEDEEGKRIHCHVR----KNADPIITGDRIYWLPEQDGTGTIIGHAPRKSLLSRLENS 87
Query: 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
+ L AN+D ++++ + P L + R+L+ AE+ IP + LNK +L+D +
Sbjct: 88 QKQKL--VAANIDAIIIV-TAPFPPLSVEKIDRYLIAAENLNIPCIILLNKADLLDPQNK 144
Query: 126 NTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
+ K+ L + GY L+ S + GL +L L D+T V+VG SGVGKSS+I L S
Sbjct: 145 ESIKTALEIYEKIGYPVLYSSTYTPDGLTNLQHYLDDKTCVLVGASGVGKSSIIAKLTSG 204
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
E+ ++G++S + GKHTT L L+ GG+L D+PG
Sbjct: 205 ----------------------ENIKIGDLSHSTQLGKHTTTSTRLYHLTKGGHLIDSPG 242
Query: 243 FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWE 295
+ + ++ K + Q F E K LK +C F +C H EPGC +K E
Sbjct: 243 VREFGIGQLDKSQILQGFKEFKPYLK-----QCKFRDCYHQTEPGCAIKQAASDKKISEE 297
Query: 296 RYQYYFQLLDE 306
R Q Y+++L++
Sbjct: 298 RLQSYYKILND 308
>gi|194334658|ref|YP_002016518.1| ribosome small subunit-dependent GTPase A [Prosthecochloris
aestuarii DSM 271]
gi|194312476|gb|ACF46871.1| ribosome small subunit-dependent GTPase A [Prosthecochloris
aestuarii DSM 271]
Length = 316
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 34/251 (13%)
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
RS E + +N+D L ++ S D P L + R+LV A S +P+ + +NK +L ++
Sbjct: 90 NRSKEKIQVIASNIDQLCVVVSADDPPLNLRLIDRYLVFAGSEQMPVLIIINKTDLARQK 149
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
L GY + S ES G+++LL L + + G SGVGKS+LIN L
Sbjct: 150 ELEEEMRVYADLGYPLCYVSAESGEGIEALLDLLSGKISAFSGHSGVGKSTLINRL---- 205
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+G E + E+S + RG HTT + +L L GGGY+ DTPG
Sbjct: 206 ---------------IGE---ERLKTAEISAGNSRGVHTTTNAVMLSLPGGGYVIDTPGI 247
Query: 244 NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV-------KGDWER 296
+ +L VT ++L FPE E + C++++C H EPGC V + D R
Sbjct: 248 REFNLSGVTSENLRFWFPEFLESM-----GNCAYSSCSHTVEPGCGVAQAVEAGRIDARR 302
Query: 297 YQYYFQLLDEI 307
Y+ Y + D +
Sbjct: 303 YESYLAIFDTL 313
>gi|381336978|ref|YP_005174753.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|356644944|gb|AET30787.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 299
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 46/290 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K++ LVGD V + + G I + +R ++ PP+AN+D +++ +
Sbjct: 32 ARGEFRKSKQKPLVGDFV---DFESENDEGFIWAIHERENFLVRPPIANIDIAVIVTAAK 88
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
+P P L R LV E+ + + +K++L+++ E +N + + GY+ +F
Sbjct: 89 EPDFAPNLLDRQLVALEAANVRPLIYFSKMDLLEKSEHEKINHVANYYQSIGYDVIFS-- 146
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+SK ++L L+D +V +G +G GKS+L+N L P LG +
Sbjct: 147 DSKSAFEALKMMLKDHVSVFMGQTGAGKSTLLNHL----------------SPQLGLE-- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
GEVS RGKHTTR V+L+ + +ADTPGF+ + + L FPE
Sbjct: 189 ----TGEVSKALSRGKHTTRQVTLIEVD-EALIADTPGFSSYEVFDFPVEELDDYFPEFV 243
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK----------GDWERYQYYFQLL 304
E + C F CLHL EPGC +K + Y+ +++L+
Sbjct: 244 EKRQ-----DCRFRGCLHLNEPGCAIKEAVAVGTITQSRYNSYKAFYELI 288
>gi|300771709|ref|ZP_07081584.1| ribosome small subunit-dependent GTPase A [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761698|gb|EFK58519.1| ribosome small subunit-dependent GTPase A [Sphingobacterium
spiritivorum ATCC 33861]
Length = 306
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 30/219 (13%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSR 131
AN+D LL+ ++ P + RFLV AE+ +P L NK++L +E +L ++
Sbjct: 87 ANLDQALLVVTLASPPTSLGFIDRFLVTAEAYSVPAMLVFNKLDLFSDEGLDILKEYEQI 146
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY S + ++ L L+D+ T++ G SGVGKS+LINAL P A
Sbjct: 147 YESIGYPCYKVSALEGINVEELKDLLKDKVTLVSGHSGVGKSTLINAL--IPEAG----- 199
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+ G +S S +GKHTT ++ L GG L DTPG + ++ +
Sbjct: 200 ---------------LKTGSISDWSDKGKHTTTFAEMMDLPFGGKLIDTPGIRELGIVDI 244
Query: 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
Q L+ FPE++ +L KC FNNC H+ EPGC V
Sbjct: 245 EPQELSHFFPEMRALLN-----KCRFNNCRHVNEPGCAV 278
>gi|222153742|ref|YP_002562919.1| ribosome-associated GTPase [Streptococcus uberis 0140J]
gi|222114555|emb|CAR43501.1| probable GTPase EngC [Streptococcus uberis 0140J]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 133/293 (45%), Gaps = 45/293 (15%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD V + D + G I + R E++ PP+ N+D +++ S
Sbjct: 26 ARGHFRKKGQTPYVGDFVDFSAEDHSE--GYILALHPRKNELVRPPIVNIDQAVVVMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+D+ + + + GY
Sbjct: 84 EPDFNSNLLDRFLVLLEHKTIKPLVYISKLDLLDDLSAIESIRQEYQKIGY-------HF 136
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L L+ LL L+DQ TV +G +GVGKS+L+N + AA
Sbjct: 137 ALSLEELLPHLKDQVTVFMGQTGVGKSTLLNKIAPELALETAA----------------- 179
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEM 266
+S GRGKHTTR VS + GG +ADTPGF+ + L++ FPEI+
Sbjct: 180 -----ISDSLGRGKHTTRAVSFYNVYGGK-IADTPGFSNLDYAIDKAEDLSEAFPEIRHF 233
Query: 267 LKANEPAKCSFNNCLHLGEPGCVV-----KGD-WE-RYQYYFQLLDEIRIREE 312
+C F +C H EP C V GD W+ RY Y Q L EI R E
Sbjct: 234 -----SHQCKFRSCSHRHEPQCAVIAAVESGDVWKVRYDNYLQFLSEIENRRE 281
>gi|417793692|ref|ZP_12440964.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK255]
gi|334272347|gb|EGL90713.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK255]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 49/276 (17%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ F + + + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD--FVTRK-----EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283
R VS L+GG +ADTPGF+ T + L Q FPEI A+ C F C H
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI-----ASVSRDCKFRTCTHT 245
Query: 284 GEPGCVVKGDWE-------RYQYYFQLLDEIRIREE 312
EP C VK E R+ Y Q L EI R E
Sbjct: 246 HEPSCAVKPAVEEGIIASFRFDNYLQFLSEIENRRE 281
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,264,135,103
Number of Sequences: 23463169
Number of extensions: 269553072
Number of successful extensions: 1510233
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 1378
Number of HSP's that attempted gapping in prelim test: 1496344
Number of HSP's gapped (non-prelim): 4561
length of query: 391
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 247
effective length of database: 8,980,499,031
effective search space: 2218183260657
effective search space used: 2218183260657
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)