Query 016339
Match_columns 391
No_of_seqs 490 out of 3440
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12289 GTPase RsgA; Reviewed 100.0 2.1E-62 4.5E-67 486.4 29.1 318 21-366 34-351 (352)
2 COG1162 Predicted GTPases [Gen 100.0 4.2E-52 9E-57 398.5 23.5 262 19-310 25-295 (301)
3 PRK12288 GTPase RsgA; Reviewed 100.0 6E-47 1.3E-51 375.6 24.3 260 19-310 57-336 (347)
4 cd01854 YjeQ_engC YjeQ/EngC. 100.0 4.2E-45 9.1E-50 354.8 23.2 255 21-304 17-286 (287)
5 PRK00098 GTPase RsgA; Reviewed 100.0 1.1E-43 2.4E-48 346.6 25.1 261 20-309 19-294 (298)
6 TIGR00157 ribosome small subun 100.0 4.8E-44 1E-48 339.9 21.0 236 39-304 1-244 (245)
7 PRK01889 GTPase RsgA; Reviewed 100.0 5.2E-40 1.1E-44 327.8 23.2 257 22-312 48-327 (356)
8 COG1116 TauB ABC-type nitrate/ 100.0 2E-32 4.3E-37 255.7 7.8 200 136-352 5-223 (248)
9 COG3839 MalK ABC-type sugar tr 100.0 7.6E-32 1.7E-36 264.4 5.3 161 135-364 4-184 (338)
10 COG1126 GlnQ ABC-type polar am 100.0 1.4E-31 3.1E-36 244.3 5.6 162 136-313 4-188 (240)
11 COG3842 PotA ABC-type spermidi 100.0 1.4E-30 3E-35 256.8 5.3 160 135-363 6-186 (352)
12 COG1125 OpuBA ABC-type proline 100.0 1.2E-29 2.5E-34 236.4 3.7 181 136-332 3-208 (309)
13 PF03193 DUF258: Protein of un 100.0 1.1E-28 2.3E-33 219.1 9.1 153 126-305 2-161 (161)
14 COG2884 FtsE Predicted ATPase 100.0 7.7E-29 1.7E-33 222.1 7.0 160 136-313 3-189 (223)
15 COG1136 SalX ABC-type antimicr 99.9 2.1E-28 4.5E-33 227.9 6.7 179 137-332 4-218 (226)
16 COG1135 AbcC ABC-type metal io 99.9 7.5E-28 1.6E-32 230.0 7.4 159 137-313 4-193 (339)
17 COG1120 FepC ABC-type cobalami 99.9 2.5E-27 5.3E-32 224.7 7.9 185 136-341 4-224 (258)
18 COG1124 DppF ABC-type dipeptid 99.9 4.6E-27 1E-31 218.3 9.2 158 136-313 5-193 (252)
19 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.2E-27 4.8E-32 224.1 6.6 162 135-313 5-191 (254)
20 COG3638 ABC-type phosphate/pho 99.9 2.7E-27 5.9E-32 218.7 5.4 175 135-327 4-219 (258)
21 COG1118 CysA ABC-type sulfate/ 99.9 1.8E-26 3.8E-31 220.2 4.9 151 136-309 4-185 (345)
22 COG1127 Ttg2A ABC-type transpo 99.9 5.9E-26 1.3E-30 210.4 6.1 160 136-313 10-197 (263)
23 COG1117 PstB ABC-type phosphat 99.9 2.4E-26 5.3E-31 209.4 2.0 173 135-318 8-206 (253)
24 COG3840 ThiQ ABC-type thiamine 99.9 3.9E-25 8.4E-30 197.1 8.6 152 137-313 4-181 (231)
25 COG0410 LivF ABC-type branched 99.9 1.5E-24 3.3E-29 200.2 7.9 160 136-312 5-187 (237)
26 PRK11650 ugpC glycerol-3-phosp 99.9 5.8E-25 1.3E-29 219.7 5.0 153 135-310 4-183 (356)
27 COG4525 TauB ABC-type taurine 99.9 4.5E-25 9.7E-30 198.7 3.8 173 136-324 5-197 (259)
28 PRK11432 fbpC ferric transport 99.9 7.3E-25 1.6E-29 218.6 4.4 153 135-310 7-185 (351)
29 TIGR02314 ABC_MetN D-methionin 99.9 3.7E-24 8E-29 212.7 7.8 157 136-310 3-189 (343)
30 TIGR03265 PhnT2 putative 2-ami 99.9 1E-24 2.3E-29 217.7 3.6 153 135-310 5-183 (353)
31 PRK09452 potA putrescine/sperm 99.9 1.9E-24 4.1E-29 217.2 4.7 153 135-310 15-193 (375)
32 TIGR03258 PhnT 2-aminoethylpho 99.9 1.4E-24 3.1E-29 217.3 3.2 153 135-310 6-186 (362)
33 COG1122 CbiO ABC-type cobalt t 99.9 5E-24 1.1E-28 201.0 6.4 154 137-311 6-188 (235)
34 cd03259 ABC_Carb_Solutes_like 99.9 4.1E-24 8.9E-29 198.3 5.2 151 137-310 3-179 (213)
35 PRK10851 sulfate/thiosulfate t 99.9 5E-24 1.1E-28 212.8 5.2 152 136-310 4-185 (353)
36 PRK11000 maltose/maltodextrin 99.9 4E-24 8.7E-29 214.7 4.4 153 135-310 4-182 (369)
37 cd03261 ABC_Org_Solvent_Resist 99.9 2E-23 4.3E-28 196.6 8.7 156 137-310 3-185 (235)
38 PRK13537 nodulation ABC transp 99.9 4.4E-24 9.4E-29 209.4 4.1 154 135-310 8-187 (306)
39 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 5.9E-24 1.3E-28 197.8 4.8 157 137-310 3-189 (218)
40 COG1131 CcmA ABC-type multidru 99.9 4.6E-24 1E-28 207.9 4.2 155 135-311 5-186 (293)
41 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.4E-24 1.2E-28 198.5 4.5 148 137-310 3-180 (220)
42 cd03265 ABC_DrrA DrrA is the A 99.9 6.4E-24 1.4E-28 198.1 4.8 152 137-310 3-180 (220)
43 PRK11607 potG putrescine trans 99.9 5.2E-24 1.1E-28 214.3 4.2 153 135-310 20-198 (377)
44 TIGR00960 3a0501s02 Type II (G 99.9 5.9E-24 1.3E-28 197.6 4.1 156 137-310 4-187 (216)
45 cd03301 ABC_MalK_N The N-termi 99.9 1.1E-23 2.3E-28 195.4 5.1 151 137-310 3-179 (213)
46 PRK13536 nodulation factor exp 99.9 6.5E-24 1.4E-28 210.9 3.8 154 135-310 42-221 (340)
47 cd03296 ABC_CysA_sulfate_impor 99.9 1.4E-23 3.1E-28 198.2 5.7 152 136-310 4-185 (239)
48 cd03225 ABC_cobalt_CbiO_domain 99.9 3E-23 6.6E-28 192.0 7.7 153 137-310 2-183 (211)
49 cd03226 ABC_cobalt_CbiO_domain 99.9 3.5E-23 7.5E-28 191.1 7.9 150 137-310 2-175 (205)
50 COG4161 ArtP ABC-type arginine 99.9 6E-24 1.3E-28 186.3 2.6 160 135-311 3-191 (242)
51 cd03266 ABC_NatA_sodium_export 99.9 1.2E-23 2.5E-28 195.8 4.5 152 137-310 4-185 (218)
52 COG4181 Predicted ABC-type tra 99.9 2.5E-23 5.5E-28 183.9 6.2 152 145-313 21-198 (228)
53 cd03263 ABC_subfamily_A The AB 99.9 1.1E-23 2.5E-28 196.1 4.2 151 137-309 3-181 (220)
54 cd03218 ABC_YhbG The ABC trans 99.9 7E-23 1.5E-27 192.3 9.3 154 137-310 3-182 (232)
55 TIGR01186 proV glycine betaine 99.9 3.8E-23 8.2E-28 206.8 7.5 151 143-310 2-178 (363)
56 COG4598 HisP ABC-type histidin 99.9 8.7E-24 1.9E-28 188.2 2.3 163 135-313 7-204 (256)
57 TIGR03608 L_ocin_972_ABC putat 99.9 1.5E-23 3.2E-28 193.3 3.8 156 138-310 2-183 (206)
58 cd03268 ABC_BcrA_bacitracin_re 99.9 8.4E-23 1.8E-27 188.8 8.9 150 137-309 3-174 (208)
59 cd03256 ABC_PhnC_transporter A 99.9 7E-23 1.5E-27 193.2 8.5 156 137-310 3-193 (241)
60 TIGR02673 FtsE cell division A 99.9 1.5E-23 3.3E-28 194.4 3.9 156 137-310 4-186 (214)
61 PRK11248 tauB taurine transpor 99.9 2.3E-23 5E-28 199.1 5.2 148 137-310 4-177 (255)
62 cd03269 ABC_putative_ATPase Th 99.9 1.8E-23 3.9E-28 193.5 4.3 149 137-310 3-177 (210)
63 PRK09536 btuD corrinoid ABC tr 99.9 3.9E-23 8.4E-28 209.2 6.8 154 136-310 5-188 (402)
64 cd03258 ABC_MetN_methionine_tr 99.9 2.1E-23 4.5E-28 196.1 4.4 156 137-310 4-189 (233)
65 TIGR01288 nodI ATP-binding ABC 99.9 8.9E-23 1.9E-27 199.7 9.0 153 136-310 6-184 (303)
66 cd03292 ABC_FtsE_transporter F 99.9 1.8E-23 4E-28 193.8 3.8 156 137-310 3-185 (214)
67 cd03235 ABC_Metallic_Cations A 99.9 4.5E-23 9.8E-28 191.3 6.3 147 137-309 2-180 (213)
68 cd03214 ABC_Iron-Siderophores_ 99.9 4.1E-23 8.8E-28 187.2 5.8 138 137-310 2-146 (180)
69 TIGR02315 ABC_phnC phosphonate 99.9 5.7E-23 1.2E-27 194.2 6.9 156 137-310 4-194 (243)
70 COG4175 ProV ABC-type proline/ 99.9 3.7E-23 7.9E-28 198.1 5.5 153 144-313 38-216 (386)
71 cd03219 ABC_Mj1267_LivG_branch 99.9 2.6E-23 5.5E-28 195.8 4.3 153 137-309 3-191 (236)
72 cd03231 ABC_CcmA_heme_exporter 99.9 1.6E-22 3.4E-27 186.4 9.5 152 137-310 3-174 (201)
73 TIGR01188 drrA daunorubicin re 99.9 2E-23 4.3E-28 204.3 3.4 146 143-310 2-173 (302)
74 TIGR02211 LolD_lipo_ex lipopro 99.9 2.9E-23 6.3E-28 193.5 4.4 157 137-310 4-190 (221)
75 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.2E-22 2.7E-27 191.4 8.7 152 137-310 4-181 (236)
76 PRK13538 cytochrome c biogenes 99.9 1.3E-22 2.8E-27 187.3 8.4 151 137-309 4-177 (204)
77 COG1123 ATPase components of v 99.9 8.5E-23 1.8E-27 209.9 7.8 158 137-313 283-481 (539)
78 PRK11153 metN DL-methionine tr 99.9 2.3E-23 5E-28 207.3 3.6 156 137-310 4-189 (343)
79 cd03262 ABC_HisP_GlnQ_permease 99.9 4.9E-23 1.1E-27 190.7 5.5 156 136-310 2-184 (213)
80 cd03224 ABC_TM1139_LivF_branch 99.9 1.2E-22 2.6E-27 189.4 7.9 153 137-309 3-180 (222)
81 COG4608 AppF ABC-type oligopep 99.9 6.5E-23 1.4E-27 194.1 6.1 128 147-313 26-161 (268)
82 TIGR03522 GldA_ABC_ATP gliding 99.9 2.2E-23 4.9E-28 203.8 3.1 152 136-309 4-181 (301)
83 cd03264 ABC_drug_resistance_li 99.9 3.6E-23 7.8E-28 191.7 4.2 150 137-309 3-178 (211)
84 PRK11629 lolD lipoprotein tran 99.9 3E-23 6.6E-28 195.2 3.7 158 136-310 7-194 (233)
85 TIGR01189 ccmA heme ABC export 99.9 1.8E-22 4E-27 185.4 8.6 151 137-309 3-175 (198)
86 PRK13647 cbiO cobalt transport 99.9 8.3E-23 1.8E-27 197.2 6.3 154 136-310 6-187 (274)
87 TIGR02868 CydC thiol reductant 99.9 6.2E-23 1.4E-27 214.9 5.8 155 134-307 334-516 (529)
88 PRK11247 ssuB aliphatic sulfon 99.9 9E-23 2E-27 195.4 6.4 150 135-310 13-182 (257)
89 PRK13540 cytochrome c biogenes 99.9 1.8E-22 3.9E-27 185.8 8.1 152 136-309 3-175 (200)
90 TIGR03410 urea_trans_UrtE urea 99.9 1.9E-22 4.1E-27 189.2 8.4 154 137-310 3-180 (230)
91 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.3E-22 5E-27 190.3 8.9 153 137-310 3-184 (242)
92 KOG0058 Peptide exporter, ABC 99.9 7.2E-23 1.6E-27 213.8 5.9 159 134-310 465-653 (716)
93 PRK10575 iron-hydroxamate tran 99.9 2.1E-22 4.6E-27 193.3 8.2 155 135-310 12-196 (265)
94 PRK10908 cell division protein 99.9 6.6E-23 1.4E-27 191.5 4.5 156 137-310 4-186 (222)
95 PRK11300 livG leucine/isoleuci 99.9 2.1E-22 4.6E-27 191.7 8.0 155 136-310 7-202 (255)
96 PRK13650 cbiO cobalt transport 99.9 1.4E-22 2.9E-27 196.2 6.7 155 135-310 5-189 (279)
97 PRK11022 dppD dipeptide transp 99.9 1.1E-22 2.3E-27 201.3 6.0 163 136-311 5-203 (326)
98 COG0411 LivG ABC-type branched 99.9 4.4E-23 9.5E-28 191.9 3.1 159 137-311 7-199 (250)
99 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.3E-22 4.9E-27 186.3 7.5 149 137-310 3-177 (211)
100 PRK11124 artP arginine transpo 99.9 8.1E-23 1.8E-27 193.3 4.6 159 136-310 4-190 (242)
101 TIGR03411 urea_trans_UrtD urea 99.9 2.5E-22 5.4E-27 189.8 7.9 154 136-309 4-191 (242)
102 PRK10584 putative ABC transpor 99.9 8.9E-23 1.9E-27 191.2 4.8 158 136-310 8-195 (228)
103 cd03216 ABC_Carb_Monos_I This 99.9 2.4E-22 5.2E-27 179.5 7.2 122 137-310 3-131 (163)
104 COG1137 YhbG ABC-type (unclass 99.9 1.2E-23 2.5E-28 190.2 -1.3 154 137-310 7-188 (243)
105 PRK14250 phosphate ABC transpo 99.9 2.7E-22 5.8E-27 189.9 7.6 155 135-310 4-180 (241)
106 PRK13644 cbiO cobalt transport 99.9 2.6E-22 5.6E-27 193.8 7.5 155 136-310 3-185 (274)
107 PRK10253 iron-enterobactin tra 99.9 2.4E-22 5.2E-27 192.9 7.2 155 135-310 8-192 (265)
108 PRK13635 cbiO cobalt transport 99.9 2.2E-22 4.7E-27 194.9 7.0 155 135-310 6-189 (279)
109 PRK13637 cbiO cobalt transport 99.9 2.9E-22 6.3E-27 194.7 7.9 156 136-310 4-193 (287)
110 PRK15079 oligopeptide ABC tran 99.9 1.6E-22 3.4E-27 200.4 6.1 157 136-310 10-210 (331)
111 COG4148 ModC ABC-type molybdat 99.9 2.4E-22 5.2E-27 189.7 6.8 144 152-313 16-180 (352)
112 PRK11831 putative ABC transpor 99.9 3.6E-22 7.7E-27 192.2 8.1 158 135-310 8-192 (269)
113 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.6E-23 1.2E-27 197.9 2.5 157 137-310 27-209 (269)
114 COG0444 DppD ABC-type dipeptid 99.9 2E-22 4.4E-27 194.5 6.2 166 136-313 3-205 (316)
115 PRK11308 dppF dipeptide transp 99.9 1.8E-22 3.9E-27 199.6 6.1 158 136-311 7-204 (327)
116 TIGR01166 cbiO cobalt transpor 99.9 3E-22 6.4E-27 182.7 7.0 147 144-309 2-175 (190)
117 PRK09493 glnQ glutamine ABC tr 99.9 1.2E-22 2.7E-27 191.8 4.6 155 137-310 4-185 (240)
118 PRK13652 cbiO cobalt transport 99.9 2.6E-22 5.7E-27 194.0 6.8 154 136-310 5-186 (277)
119 PRK11231 fecE iron-dicitrate t 99.9 2.6E-22 5.6E-27 191.5 6.5 154 136-310 4-187 (255)
120 PRK13548 hmuV hemin importer A 99.9 4.9E-22 1.1E-26 190.1 8.5 152 136-308 4-187 (258)
121 COG4555 NatA ABC-type Na+ tran 99.9 5E-23 1.1E-27 186.3 1.3 155 137-313 4-185 (245)
122 PRK10247 putative ABC transpor 99.9 3.1E-22 6.7E-27 187.6 6.7 154 136-310 9-186 (225)
123 PRK13638 cbiO cobalt transport 99.9 1.2E-22 2.6E-27 195.6 4.0 156 136-310 3-185 (271)
124 PRK15093 antimicrobial peptide 99.9 3.6E-22 7.9E-27 197.8 7.5 162 136-310 5-207 (330)
125 COG2274 SunT ABC-type bacterio 99.9 3.2E-22 7E-27 214.3 7.6 159 134-310 471-658 (709)
126 PRK10895 lipopolysaccharide AB 99.9 3.2E-22 6.9E-27 189.1 6.7 155 136-310 5-186 (241)
127 TIGR03005 ectoine_ehuA ectoine 99.9 1.8E-22 3.8E-27 192.2 4.9 158 137-310 3-195 (252)
128 PRK13632 cbiO cobalt transport 99.9 3.9E-22 8.4E-27 192.2 7.3 155 135-310 8-191 (271)
129 PRK13539 cytochrome c biogenes 99.9 2.5E-22 5.4E-27 186.0 5.5 151 136-310 4-176 (207)
130 PRK11264 putative amino-acid A 99.9 6.6E-22 1.4E-26 187.8 8.5 159 136-310 5-193 (250)
131 cd03257 ABC_NikE_OppD_transpor 99.9 1.1E-21 2.3E-26 183.5 9.5 156 137-310 4-194 (228)
132 TIGR00972 3a0107s01c2 phosphat 99.9 7E-22 1.5E-26 187.5 8.3 156 136-310 3-193 (247)
133 PRK13633 cobalt transporter AT 99.9 5.9E-22 1.3E-26 191.8 7.7 155 136-310 6-193 (280)
134 PRK10070 glycine betaine trans 99.9 8E-23 1.7E-27 206.8 1.5 156 138-310 32-213 (400)
135 PRK13646 cbiO cobalt transport 99.9 1.6E-22 3.4E-27 196.5 3.5 158 136-310 4-194 (286)
136 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.1E-22 2.4E-27 190.7 2.3 160 135-310 23-191 (224)
137 cd03229 ABC_Class3 This class 99.9 7.5E-22 1.6E-26 178.6 7.4 140 137-310 3-149 (178)
138 TIGR01978 sufC FeS assembly AT 99.9 1.2E-21 2.5E-26 185.1 9.0 156 137-309 3-192 (243)
139 PRK13634 cbiO cobalt transport 99.9 1.4E-22 3.1E-27 197.1 2.8 158 136-310 4-194 (290)
140 PRK11614 livF leucine/isoleuci 99.9 6.9E-22 1.5E-26 186.4 7.3 156 135-310 6-186 (237)
141 PRK10771 thiQ thiamine transpo 99.9 6.4E-22 1.4E-26 186.1 7.0 149 137-310 4-178 (232)
142 cd03233 ABC_PDR_domain1 The pl 99.9 9.1E-22 2E-26 181.7 7.8 149 136-310 5-167 (202)
143 cd03245 ABCC_bacteriocin_expor 99.9 8.3E-22 1.8E-26 183.6 7.5 156 136-309 4-188 (220)
144 TIGR03415 ABC_choXWV_ATP choli 99.9 1.1E-22 2.4E-27 204.6 1.7 155 138-310 28-213 (382)
145 TIGR02982 heterocyst_DevA ABC 99.9 1.1E-21 2.3E-26 183.2 8.2 156 137-310 4-190 (220)
146 TIGR03873 F420-0_ABC_ATP propo 99.9 1.2E-21 2.5E-26 187.1 8.4 154 136-310 3-186 (256)
147 TIGR03740 galliderm_ABC gallid 99.8 4.6E-22 1E-26 185.9 5.4 149 137-310 3-173 (223)
148 PRK13643 cbiO cobalt transport 99.8 2.5E-22 5.4E-27 195.3 3.7 158 136-310 3-193 (288)
149 PRK13651 cobalt transporter AT 99.8 3E-22 6.6E-27 196.3 4.3 159 136-310 4-214 (305)
150 TIGR01277 thiQ thiamine ABC tr 99.8 5.7E-22 1.2E-26 184.1 5.9 149 137-310 3-177 (213)
151 PRK09984 phosphonate/organopho 99.8 1.2E-21 2.5E-26 187.7 8.3 159 136-310 6-201 (262)
152 PRK09544 znuC high-affinity zi 99.8 4.4E-22 9.6E-27 189.9 5.3 156 136-310 6-169 (251)
153 cd03230 ABC_DR_subfamily_A Thi 99.8 1.2E-21 2.6E-26 176.4 7.8 135 137-310 3-144 (173)
154 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.5E-21 3.2E-26 179.9 8.4 144 137-310 3-153 (200)
155 cd03260 ABC_PstB_phosphate_tra 99.8 7.8E-22 1.7E-26 184.7 6.6 160 137-310 3-190 (227)
156 PRK13631 cbiO cobalt transport 99.8 8.8E-22 1.9E-26 194.2 7.2 160 135-310 22-225 (320)
157 COG4604 CeuD ABC-type enteroch 99.8 6.7E-22 1.5E-26 178.5 5.7 161 137-313 4-187 (252)
158 PRK13543 cytochrome c biogenes 99.8 4.4E-22 9.6E-27 185.2 4.6 152 135-310 12-186 (214)
159 PRK15112 antimicrobial peptide 99.8 1.3E-21 2.8E-26 188.1 7.9 154 136-310 6-198 (267)
160 PRK13641 cbiO cobalt transport 99.8 2.5E-22 5.5E-27 195.1 2.8 158 136-310 4-194 (287)
161 TIGR02769 nickel_nikE nickel i 99.8 1.2E-21 2.6E-26 188.1 7.4 157 136-310 4-199 (265)
162 PRK13648 cbiO cobalt transport 99.8 1.2E-21 2.5E-26 188.6 7.2 155 135-310 8-191 (269)
163 PRK11144 modC molybdate transp 99.8 2.2E-21 4.8E-26 193.8 9.2 153 139-310 5-177 (352)
164 PRK13636 cbiO cobalt transport 99.8 4.7E-22 1E-26 192.8 4.2 156 136-310 7-190 (283)
165 PRK11701 phnK phosphonate C-P 99.8 1.6E-21 3.5E-26 186.3 7.7 158 136-310 8-200 (258)
166 cd03300 ABC_PotA_N PotA is an 99.8 3.3E-21 7.2E-26 181.4 9.7 151 137-310 3-179 (232)
167 TIGR02323 CP_lyasePhnK phospho 99.8 1.9E-21 4E-26 185.2 8.0 158 136-310 5-197 (253)
168 PRK10619 histidine/lysine/argi 99.8 1.1E-21 2.4E-26 187.4 6.4 160 135-310 6-201 (257)
169 cd03254 ABCC_Glucan_exporter_l 99.8 1.8E-21 3.8E-26 182.4 7.6 156 135-308 3-186 (229)
170 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1E-21 2.2E-26 211.9 6.8 156 134-307 451-634 (686)
171 TIGR02142 modC_ABC molybdenum 99.8 2.3E-21 5E-26 193.8 8.9 153 139-310 4-180 (354)
172 TIGR00968 3a0106s01 sulfate AB 99.8 7.6E-22 1.6E-26 186.4 5.0 151 137-310 3-179 (237)
173 PRK09473 oppD oligopeptide tra 99.8 1.2E-21 2.5E-26 194.2 6.4 158 136-310 14-210 (330)
174 COG1132 MdlB ABC-type multidru 99.8 7.4E-22 1.6E-26 208.6 5.3 156 135-308 329-512 (567)
175 PRK13645 cbiO cobalt transport 99.8 2.4E-21 5.2E-26 188.3 8.4 160 135-310 7-199 (289)
176 PRK13639 cbiO cobalt transport 99.8 1.4E-21 3E-26 188.7 6.7 156 136-310 3-186 (275)
177 PRK15056 manganese/iron transp 99.8 2.1E-21 4.5E-26 187.2 7.8 152 135-310 7-191 (272)
178 PRK14247 phosphate ABC transpo 99.8 2.7E-21 5.9E-26 183.7 8.4 159 135-309 4-194 (250)
179 cd03246 ABCC_Protease_Secretio 99.8 1.8E-21 3.9E-26 175.2 6.7 133 137-309 3-144 (173)
180 cd03222 ABC_RNaseL_inhibitor T 99.8 2.7E-21 5.8E-26 175.3 7.8 111 137-310 3-120 (177)
181 PRK13642 cbiO cobalt transport 99.8 2.5E-21 5.3E-26 187.2 8.0 154 136-310 6-189 (277)
182 cd03297 ABC_ModC_molybdenum_tr 99.8 5.3E-21 1.2E-25 177.6 9.7 152 139-310 5-180 (214)
183 PRK13547 hmuV hemin importer A 99.8 2.2E-21 4.8E-26 187.3 7.1 154 136-310 3-203 (272)
184 PRK10938 putative molybdenum t 99.8 1.5E-21 3.3E-26 202.7 6.5 154 136-310 5-184 (490)
185 PRK15439 autoinducer 2 ABC tra 99.8 2E-21 4.4E-26 202.9 7.4 156 135-310 12-189 (510)
186 PRK09700 D-allose transporter 99.8 1.8E-21 3.8E-26 203.3 6.8 155 136-310 7-194 (510)
187 TIGR02324 CP_lyasePhnL phospho 99.8 9.4E-22 2E-26 183.8 4.2 158 136-310 3-198 (224)
188 KOG0057 Mitochondrial Fe/S clu 99.8 2.5E-21 5.4E-26 196.6 7.5 153 135-306 352-532 (591)
189 PRK10418 nikD nickel transport 99.8 4.2E-21 9.1E-26 183.1 8.7 152 135-310 5-189 (254)
190 PRK10762 D-ribose transporter 99.8 2.1E-21 4.6E-26 202.3 7.0 155 136-310 6-190 (501)
191 cd03247 ABCC_cytochrome_bd The 99.8 1.6E-21 3.4E-26 176.4 5.3 134 137-308 3-145 (178)
192 TIGR02857 CydD thiol reductant 99.8 2E-21 4.4E-26 203.5 6.8 157 134-308 320-505 (529)
193 PRK14259 phosphate ABC transpo 99.8 1.2E-21 2.6E-26 188.7 4.5 161 135-309 14-202 (269)
194 cd03228 ABCC_MRP_Like The MRP 99.8 2.5E-21 5.4E-26 174.0 6.3 132 137-308 3-143 (171)
195 PRK13640 cbiO cobalt transport 99.8 2.5E-21 5.5E-26 187.7 6.7 154 136-310 7-192 (282)
196 PRK13649 cbiO cobalt transport 99.8 8.2E-22 1.8E-26 190.6 3.2 158 136-310 4-194 (280)
197 cd03244 ABCC_MRP_domain2 Domai 99.8 4.4E-21 9.5E-26 178.8 7.9 153 135-308 3-186 (221)
198 PRK14267 phosphate ABC transpo 99.8 3.8E-21 8.2E-26 183.0 7.4 155 136-309 6-197 (253)
199 PRK14269 phosphate ABC transpo 99.8 4E-21 8.6E-26 182.4 7.5 156 136-309 4-190 (246)
200 cd03252 ABCC_Hemolysin The ABC 99.8 4.2E-21 9.1E-26 180.9 7.4 151 137-308 3-185 (237)
201 cd03251 ABCC_MsbA MsbA is an e 99.8 2.9E-21 6.4E-26 181.5 6.2 152 137-309 3-186 (234)
202 PRK11174 cysteine/glutathione 99.8 2.3E-21 5E-26 205.5 6.0 155 135-308 350-532 (588)
203 CHL00131 ycf16 sulfate ABC tra 99.8 8.1E-21 1.8E-25 180.6 9.1 157 135-310 8-200 (252)
204 PRK10744 pstB phosphate transp 99.8 1.9E-21 4.1E-26 186.1 4.7 161 135-309 14-204 (260)
205 COG4988 CydD ABC-type transpor 99.8 3.6E-21 7.8E-26 197.6 7.0 159 137-313 323-508 (559)
206 cd03299 ABC_ModC_like Archeal 99.8 1.9E-21 4.1E-26 183.4 4.4 150 137-310 3-178 (235)
207 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.1E-21 4.5E-26 210.3 5.3 154 135-306 478-660 (710)
208 PRK11160 cysteine/glutathione 99.8 2.6E-21 5.5E-26 204.9 5.8 156 134-308 338-522 (574)
209 PRK13549 xylose transporter AT 99.8 3.9E-21 8.5E-26 200.5 7.1 156 135-310 6-192 (506)
210 cd03248 ABCC_TAP TAP, the Tran 99.8 3.5E-21 7.6E-26 180.2 6.0 154 135-309 12-198 (226)
211 cd03215 ABC_Carb_Monos_II This 99.8 6.2E-21 1.4E-25 173.1 7.4 139 137-310 7-153 (182)
212 PRK13541 cytochrome c biogenes 99.8 3E-21 6.5E-26 177.0 5.4 147 136-308 3-170 (195)
213 PRK14242 phosphate transporter 99.8 7E-21 1.5E-25 181.2 8.0 160 136-309 8-197 (253)
214 cd03289 ABCC_CFTR2 The CFTR su 99.8 5.2E-21 1.1E-25 184.9 7.2 155 135-308 3-185 (275)
215 PRK10790 putative multidrug tr 99.8 1.5E-21 3.3E-26 207.1 3.8 157 135-309 341-524 (592)
216 PRK10982 galactose/methyl gala 99.8 4.3E-21 9.4E-26 199.5 6.9 153 138-310 2-183 (491)
217 PRK14241 phosphate transporter 99.8 1.7E-21 3.6E-26 186.3 3.4 161 135-309 5-196 (258)
218 COG1123 ATPase components of v 99.8 4.4E-21 9.5E-26 197.3 6.6 165 136-313 7-206 (539)
219 PRK09580 sufC cysteine desulfu 99.8 9E-21 2E-25 179.7 7.9 158 136-310 3-194 (248)
220 PRK14273 phosphate ABC transpo 99.8 2.3E-21 5.1E-26 184.7 3.9 161 135-309 8-198 (254)
221 PRK14268 phosphate ABC transpo 99.8 2E-21 4.3E-26 185.8 3.3 161 135-309 13-202 (258)
222 cd03267 ABC_NatA_like Similar 99.8 1.3E-20 2.7E-25 178.0 8.7 147 142-310 29-202 (236)
223 PRK11176 lipid transporter ATP 99.8 3.7E-21 8E-26 203.7 5.6 157 135-309 342-528 (582)
224 COG4152 ABC-type uncharacteriz 99.8 8.6E-22 1.9E-26 182.9 0.6 162 136-313 4-182 (300)
225 TIGR01193 bacteriocin_ABC ABC- 99.8 4.1E-21 8.8E-26 207.9 5.9 155 135-307 474-657 (708)
226 TIGR03375 type_I_sec_LssB type 99.8 3.9E-21 8.5E-26 207.7 5.6 158 134-309 463-649 (694)
227 cd03250 ABCC_MRP_domain1 Domai 99.8 7E-21 1.5E-25 175.5 6.4 151 137-308 3-175 (204)
228 PRK13657 cyclic beta-1,2-gluca 99.8 5.7E-21 1.2E-25 202.7 6.5 156 135-308 335-518 (588)
229 PRK14248 phosphate ABC transpo 99.8 8.7E-21 1.9E-25 182.4 7.1 161 135-309 22-212 (268)
230 PRK10419 nikE nickel transport 99.8 7.9E-21 1.7E-25 182.8 6.8 157 136-310 5-200 (268)
231 cd03253 ABCC_ATM1_transporter 99.8 1.1E-20 2.3E-25 177.9 7.6 155 137-309 3-185 (236)
232 cd03369 ABCC_NFT1 Domain 2 of 99.8 8.4E-21 1.8E-25 175.4 6.7 149 135-308 7-172 (207)
233 cd03223 ABCD_peroxisomal_ALDP 99.8 8.4E-21 1.8E-25 170.0 6.5 127 137-307 3-137 (166)
234 PRK14235 phosphate transporter 99.8 7E-21 1.5E-25 183.0 6.2 161 135-309 20-211 (267)
235 KOG0055 Multidrug/pheromone ex 99.8 4.6E-21 9.9E-26 210.3 5.5 160 134-311 350-539 (1228)
236 TIGR01184 ntrCD nitrate transp 99.8 3.7E-21 8E-26 181.0 4.1 135 150-310 1-163 (230)
237 PRK11288 araG L-arabinose tran 99.8 7.9E-21 1.7E-25 198.0 6.9 155 136-310 6-189 (501)
238 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.5E-20 3.2E-25 177.3 8.0 154 137-308 3-186 (238)
239 PRK14254 phosphate ABC transpo 99.8 2.9E-21 6.2E-26 187.6 3.1 160 136-309 41-228 (285)
240 TIGR02203 MsbA_lipidA lipid A 99.8 6.8E-21 1.5E-25 201.0 5.9 156 135-308 331-516 (571)
241 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.7E-20 3.6E-25 164.4 7.4 107 137-307 3-116 (144)
242 PRK14256 phosphate ABC transpo 99.8 5.6E-21 1.2E-25 181.9 4.4 160 136-309 6-196 (252)
243 cd03288 ABCC_SUR2 The SUR doma 99.8 1.4E-20 3E-25 180.0 7.0 156 135-308 20-203 (257)
244 PRK14243 phosphate transporter 99.8 5.1E-21 1.1E-25 183.7 3.9 160 136-309 12-199 (264)
245 PRK14275 phosphate ABC transpo 99.8 1.3E-20 2.7E-25 183.2 6.7 159 135-309 40-230 (286)
246 PRK10261 glutathione transport 99.8 1.6E-20 3.6E-25 200.5 8.1 156 137-310 316-512 (623)
247 PRK14251 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 181.3 4.2 155 136-309 6-195 (251)
248 PRK14270 phosphate ABC transpo 99.8 7.9E-21 1.7E-25 180.8 4.8 155 136-309 6-195 (251)
249 cd03234 ABCG_White The White s 99.8 7.4E-21 1.6E-25 178.2 4.6 150 137-310 6-192 (226)
250 cd03232 ABC_PDR_domain2 The pl 99.8 2.1E-20 4.5E-25 171.2 7.3 142 136-310 5-157 (192)
251 PRK14271 phosphate ABC transpo 99.8 2E-20 4.4E-25 180.8 7.6 160 135-309 22-211 (276)
252 TIGR03269 met_CoM_red_A2 methy 99.8 5.4E-21 1.2E-25 200.1 3.8 160 137-310 3-217 (520)
253 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.3E-20 2.8E-25 179.4 5.9 142 149-310 9-164 (246)
254 TIGR00958 3a01208 Conjugate Tr 99.8 7.9E-21 1.7E-25 205.8 5.0 150 135-302 479-658 (711)
255 PRK14261 phosphate ABC transpo 99.8 2.4E-20 5.3E-25 177.6 7.6 158 135-309 7-197 (253)
256 PRK14240 phosphate transporter 99.8 3.7E-20 7.9E-25 176.0 8.3 161 135-309 4-194 (250)
257 PRK14237 phosphate transporter 99.8 8.9E-21 1.9E-25 182.3 4.0 161 135-309 21-211 (267)
258 PRK14239 phosphate transporter 99.8 5.4E-20 1.2E-24 174.9 9.0 157 136-309 7-196 (252)
259 TIGR02204 MsbA_rel ABC transpo 99.8 1.5E-20 3.1E-25 198.9 5.5 156 135-308 338-523 (576)
260 PRK10522 multidrug transporter 99.8 1.9E-20 4.2E-25 197.1 6.4 156 134-308 322-496 (547)
261 COG4619 ABC-type uncharacteriz 99.8 9.9E-21 2.2E-25 167.0 3.5 145 145-310 14-182 (223)
262 KOG0055 Multidrug/pheromone ex 99.8 1.3E-20 2.8E-25 206.8 4.9 159 134-310 987-1175(1228)
263 PTZ00265 multidrug resistance 99.8 1.2E-20 2.6E-25 217.0 4.9 168 135-308 1166-1405(1466)
264 PRK14244 phosphate ABC transpo 99.8 3.2E-20 7E-25 176.6 7.0 159 137-309 8-197 (251)
265 PRK14245 phosphate ABC transpo 99.8 2.6E-20 5.5E-25 177.2 6.2 158 136-309 5-194 (250)
266 PRK14260 phosphate ABC transpo 99.8 3.1E-20 6.7E-25 177.7 6.8 156 135-309 8-198 (259)
267 KOG0056 Heavy metal exporter H 99.8 1.4E-20 3.1E-25 188.4 4.5 158 135-310 538-723 (790)
268 PRK14274 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 180.4 3.7 156 135-309 13-203 (259)
269 TIGR02633 xylG D-xylose ABC tr 99.8 2.4E-20 5.1E-25 194.3 6.1 154 137-310 4-190 (500)
270 PRK14272 phosphate ABC transpo 99.8 7E-20 1.5E-24 174.2 8.8 155 136-309 6-196 (252)
271 PRK14249 phosphate ABC transpo 99.8 2.1E-20 4.5E-25 177.9 5.1 154 136-308 6-194 (251)
272 cd03290 ABCC_SUR1_N The SUR do 99.8 9.9E-20 2.1E-24 169.6 9.5 156 137-309 3-190 (218)
273 PRK10261 glutathione transport 99.8 1E-20 2.2E-25 202.1 3.2 160 135-310 13-217 (623)
274 PRK14262 phosphate ABC transpo 99.8 4.6E-20 9.9E-25 175.3 7.2 155 136-309 5-194 (250)
275 PRK14238 phosphate transporter 99.8 1.2E-20 2.7E-25 181.8 3.4 156 135-309 25-215 (271)
276 PRK14253 phosphate ABC transpo 99.8 4.8E-20 1E-24 175.1 7.3 158 136-309 5-193 (249)
277 COG4987 CydC ABC-type transpor 99.8 2E-20 4.4E-25 189.8 5.0 157 135-309 337-522 (573)
278 TIGR01842 type_I_sec_PrtD type 99.8 3.2E-20 7E-25 195.3 6.7 156 135-308 317-501 (544)
279 PRK15134 microcin C ABC transp 99.8 2.8E-20 6E-25 195.2 6.1 158 136-310 7-205 (529)
280 PRK14266 phosphate ABC transpo 99.8 1.8E-20 3.9E-25 178.1 4.2 161 135-309 4-194 (250)
281 cd03213 ABCG_EPDR ABCG transpo 99.8 7.2E-20 1.6E-24 167.9 7.8 143 136-310 5-160 (194)
282 PRK14265 phosphate ABC transpo 99.8 4.6E-20 1E-24 178.1 6.6 160 136-309 22-209 (274)
283 PRK14236 phosphate transporter 99.8 1E-19 2.2E-24 175.4 9.0 161 135-309 26-216 (272)
284 TIGR02770 nickel_nikD nickel i 99.8 1.2E-19 2.5E-24 170.7 9.0 139 149-310 1-174 (230)
285 PRK14246 phosphate ABC transpo 99.8 1.4E-19 3E-24 173.2 9.5 155 134-309 10-201 (257)
286 TIGR01846 type_I_sec_HlyB type 99.8 2.7E-20 5.9E-25 201.2 5.1 156 135-308 456-640 (694)
287 PF00005 ABC_tran: ABC transpo 99.8 6.9E-21 1.5E-25 163.9 0.3 127 150-294 1-135 (137)
288 PRK14264 phosphate ABC transpo 99.8 5.9E-20 1.3E-24 180.1 6.9 161 136-310 47-249 (305)
289 PRK14263 phosphate ABC transpo 99.8 6.6E-20 1.4E-24 175.8 6.8 160 136-309 10-197 (261)
290 PRK14257 phosphate ABC transpo 99.8 6.3E-20 1.4E-24 181.7 6.9 161 135-309 81-273 (329)
291 PRK15134 microcin C ABC transp 99.8 1E-19 2.2E-24 190.9 8.7 156 136-310 277-474 (529)
292 PRK14255 phosphate ABC transpo 99.8 1.6E-19 3.5E-24 171.8 9.2 157 136-309 7-196 (252)
293 TIGR01192 chvA glucan exporter 99.8 6.7E-20 1.5E-24 194.5 7.2 156 135-308 335-518 (585)
294 PRK09700 D-allose transporter 99.8 4E-20 8.7E-25 193.1 5.4 143 148-310 277-458 (510)
295 PRK10789 putative multidrug tr 99.8 4.9E-20 1.1E-24 194.9 6.1 156 135-308 314-498 (569)
296 COG4559 ABC-type hemin transpo 99.8 5.1E-20 1.1E-24 168.0 5.3 155 137-312 4-192 (259)
297 PRK10938 putative molybdenum t 99.8 5.6E-20 1.2E-24 191.1 6.3 154 137-310 263-450 (490)
298 PRK14258 phosphate ABC transpo 99.8 3.3E-20 7E-25 177.8 4.2 157 135-310 8-199 (261)
299 PLN03130 ABC transporter C fam 99.8 5.2E-20 1.1E-24 213.5 6.4 156 135-308 1238-1421(1622)
300 PRK13549 xylose transporter AT 99.8 4.1E-20 8.9E-25 192.9 5.1 154 137-310 262-454 (506)
301 cd03236 ABC_RNaseL_inhibitor_d 99.8 1E-19 2.2E-24 174.2 7.3 153 138-310 4-188 (255)
302 PLN03232 ABC transporter C fam 99.8 4.5E-20 9.8E-25 213.3 5.9 156 135-308 1235-1418(1495)
303 TIGR03269 met_CoM_red_A2 methy 99.8 2.6E-20 5.6E-25 195.0 3.1 158 137-310 282-476 (520)
304 TIGR01194 cyc_pep_trnsptr cycl 99.8 5.9E-20 1.3E-24 193.8 5.7 156 134-307 337-517 (555)
305 COG1119 ModF ABC-type molybden 99.8 9.1E-20 2E-24 169.9 6.2 160 135-310 32-220 (257)
306 PRK15177 Vi polysaccharide exp 99.8 1.5E-20 3.3E-25 175.0 0.7 138 149-306 2-149 (213)
307 PRK03695 vitamin B12-transport 99.8 1.2E-19 2.7E-24 172.6 6.8 140 149-310 11-182 (248)
308 PRK13409 putative ATPase RIL; 99.8 7.3E-20 1.6E-24 194.0 5.6 150 138-310 344-502 (590)
309 TIGR02633 xylG D-xylose ABC tr 99.8 5.6E-20 1.2E-24 191.5 4.5 153 138-310 261-452 (500)
310 cd00267 ABC_ATPase ABC (ATP-bi 99.8 2.3E-19 4.9E-24 158.8 7.6 121 137-310 2-129 (157)
311 PRK13545 tagH teichoic acids e 99.8 6.5E-20 1.4E-24 189.4 4.3 156 135-310 22-192 (549)
312 COG4172 ABC-type uncharacteriz 99.8 1.6E-19 3.4E-24 177.9 6.8 186 136-334 8-234 (534)
313 PRK14252 phosphate ABC transpo 99.8 3E-19 6.5E-24 171.4 8.4 163 135-309 17-209 (265)
314 PRK15064 ABC transporter ATP-b 99.8 1.1E-19 2.4E-24 190.7 5.5 150 137-307 322-484 (530)
315 COG1129 MglA ABC-type sugar tr 99.8 1.3E-19 2.7E-24 185.4 5.3 182 137-338 11-225 (500)
316 PRK13546 teichoic acids export 99.8 7.3E-20 1.6E-24 176.0 3.2 145 147-309 37-191 (264)
317 PRK15064 ABC transporter ATP-b 99.8 3.5E-19 7.5E-24 186.9 8.6 154 137-306 4-200 (530)
318 PRK11819 putative ABC transpor 99.8 1.5E-19 3.3E-24 190.7 5.7 154 137-308 327-492 (556)
319 COG4167 SapF ABC-type antimicr 99.8 1.4E-19 3E-24 161.8 4.5 147 145-312 24-200 (267)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.6E-19 3.5E-24 190.4 5.7 154 137-308 325-490 (552)
321 PTZ00243 ABC transporter; Prov 99.8 1.7E-19 3.6E-24 208.9 6.1 155 135-307 1309-1492(1560)
322 PRK11819 putative ABC transpor 99.8 1E-19 2.2E-24 192.0 3.2 157 135-308 7-210 (556)
323 TIGR01257 rim_protein retinal- 99.8 1.8E-19 3.8E-24 209.4 5.4 152 137-310 1940-2119(2272)
324 TIGR00957 MRP_assoc_pro multi 99.8 2.1E-19 4.6E-24 208.1 5.9 157 134-308 1284-1468(1522)
325 PRK10636 putative ABC transpor 99.8 1.3E-19 2.8E-24 194.1 3.0 153 137-307 4-195 (638)
326 COG3845 ABC-type uncharacteriz 99.8 2.3E-19 5.1E-24 180.7 4.2 161 136-313 6-192 (501)
327 COG4172 ABC-type uncharacteriz 99.8 3.9E-19 8.4E-24 175.1 5.5 148 147-313 300-478 (534)
328 PRK10636 putative ABC transpor 99.8 2.9E-19 6.2E-24 191.4 5.0 153 137-307 315-476 (638)
329 COG4136 ABC-type uncharacteriz 99.8 2.4E-19 5.1E-24 155.8 3.4 138 137-294 5-161 (213)
330 COG4618 ArpD ABC-type protease 99.8 3.6E-19 7.9E-24 179.5 5.2 150 146-313 348-524 (580)
331 PRK10762 D-ribose transporter 99.8 5.6E-19 1.2E-23 184.1 6.5 143 148-310 266-444 (501)
332 cd01858 NGP_1 NGP-1. Autoanti 99.8 1.2E-17 2.6E-22 147.9 13.9 141 73-243 5-157 (157)
333 PTZ00265 multidrug resistance 99.8 3.3E-19 7.1E-24 205.1 5.0 158 134-309 382-627 (1466)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.5E-19 7.5E-24 187.9 4.4 155 136-307 6-207 (552)
335 TIGR01257 rim_protein retinal- 99.8 2.5E-19 5.3E-24 208.2 3.1 152 135-308 929-1108(2272)
336 TIGR03771 anch_rpt_ABC anchore 99.8 8.7E-19 1.9E-23 164.1 6.2 129 156-310 2-162 (223)
337 PRK10982 galactose/methyl gala 99.8 5.2E-19 1.1E-23 183.9 5.0 144 147-310 261-440 (491)
338 PRK11288 araG L-arabinose tran 99.7 5.2E-19 1.1E-23 184.4 4.9 143 148-310 267-445 (501)
339 PRK10535 macrolide transporter 99.7 4.5E-19 9.7E-24 190.2 4.0 158 136-310 6-193 (648)
340 cd03291 ABCC_CFTR1 The CFTR su 99.7 9.6E-19 2.1E-23 169.8 5.8 149 137-308 42-207 (282)
341 PRK11147 ABC transporter ATPas 99.7 6.4E-19 1.4E-23 188.7 5.0 152 138-307 323-486 (635)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 1.6E-17 3.4E-22 144.7 12.8 133 72-245 7-140 (141)
343 PRK15439 autoinducer 2 ABC tra 99.7 8.6E-19 1.9E-23 183.2 4.6 143 148-310 277-452 (510)
344 COG1101 PhnK ABC-type uncharac 99.7 3E-18 6.4E-23 156.9 7.2 147 146-313 18-200 (263)
345 PRK11147 ABC transporter ATPas 99.7 1E-18 2.2E-23 187.2 4.1 150 136-308 5-203 (635)
346 cd03238 ABC_UvrA The excision 99.7 4E-18 8.6E-23 154.4 6.9 121 146-309 7-137 (176)
347 TIGR01271 CFTR_protein cystic 99.7 2.7E-18 5.9E-23 198.4 7.4 155 135-308 1218-1400(1490)
348 PRK13409 putative ATPase RIL; 99.7 1.7E-18 3.6E-23 183.6 5.2 154 139-309 78-260 (590)
349 PLN03211 ABC transporter G-25; 99.7 1.2E-18 2.6E-23 187.0 3.9 151 138-310 72-255 (659)
350 COG0396 sufC Cysteine desulfur 99.7 7.6E-18 1.6E-22 155.6 8.6 155 136-311 5-194 (251)
351 TIGR01187 potA spermidine/putr 99.7 8.1E-19 1.8E-23 173.5 2.3 124 164-310 1-149 (325)
352 TIGR00954 3a01203 Peroxysomal 99.7 2.3E-18 4.9E-23 185.1 5.9 156 135-306 452-627 (659)
353 PLN03073 ABC transporter F fam 99.7 1.7E-18 3.6E-23 187.1 4.5 153 137-307 511-673 (718)
354 COG4586 ABC-type uncharacteriz 99.7 2.6E-18 5.6E-23 162.1 4.1 146 146-313 36-208 (325)
355 COG5265 ATM1 ABC-type transpor 99.7 4.8E-18 1E-22 168.2 5.3 156 135-308 263-446 (497)
356 COG1134 TagH ABC-type polysacc 99.7 2.5E-18 5.4E-23 160.4 3.1 174 143-332 36-223 (249)
357 COG4107 PhnK ABC-type phosphon 99.7 4.4E-18 9.5E-23 151.2 4.3 158 137-311 9-201 (258)
358 COG4674 Uncharacterized ABC-ty 99.7 5.8E-18 1.3E-22 152.9 4.1 158 136-309 7-195 (249)
359 cd01849 YlqF_related_GTPase Yl 99.7 5.4E-16 1.2E-20 137.0 14.4 135 78-243 1-155 (155)
360 COG4133 CcmA ABC-type transpor 99.7 1.2E-17 2.7E-22 150.0 3.5 152 138-308 6-177 (209)
361 TIGR00955 3a01204 The Eye Pigm 99.7 4.4E-17 9.4E-22 174.1 4.0 145 145-310 36-215 (617)
362 PLN03073 ABC transporter F fam 99.6 7.7E-17 1.7E-21 174.2 5.5 160 135-307 178-390 (718)
363 TIGR00956 3a01205 Pleiotropic 99.6 4.9E-17 1.1E-21 186.9 3.8 156 136-310 761-951 (1394)
364 COG0488 Uup ATPase components 99.6 6.1E-17 1.3E-21 168.8 3.8 153 136-305 5-197 (530)
365 TIGR00957 MRP_assoc_pro multi 99.6 1.5E-16 3.3E-21 184.4 5.3 151 135-306 637-805 (1522)
366 COG4778 PhnL ABC-type phosphon 99.6 8.6E-17 1.9E-21 142.5 2.2 150 148-313 25-204 (235)
367 PLN03232 ABC transporter C fam 99.6 1.7E-16 3.7E-21 183.8 5.0 152 135-306 615-786 (1495)
368 PLN03130 ABC transporter C fam 99.6 1.6E-16 3.6E-21 184.5 4.7 153 134-307 614-787 (1622)
369 cd01859 MJ1464 MJ1464. This f 99.6 6.8E-15 1.5E-19 129.8 13.9 144 68-243 4-156 (156)
370 TIGR03596 GTPase_YlqF ribosome 99.6 6.7E-15 1.4E-19 142.4 13.6 144 70-247 15-177 (276)
371 cd01856 YlqF YlqF. Proteins o 99.6 4.7E-15 1E-19 133.2 11.5 141 69-243 12-170 (171)
372 TIGR01271 CFTR_protein cystic 99.6 4E-16 8.7E-21 180.5 4.8 140 147-307 439-595 (1490)
373 PLN03140 ABC transporter G fam 99.6 4.7E-16 1E-20 178.8 4.6 145 147-310 893-1068(1470)
374 TIGR00956 3a01205 Pleiotropic 99.6 7E-16 1.5E-20 177.4 5.9 150 146-310 73-258 (1394)
375 PLN03140 ABC transporter G fam 99.6 1.4E-15 3E-20 174.9 7.9 141 146-310 177-385 (1470)
376 cd03278 ABC_SMC_barmotin Barmo 99.6 2.2E-15 4.9E-20 138.8 7.3 140 151-309 14-165 (197)
377 KOG0054 Multidrug resistance-a 99.6 1.5E-15 3.3E-20 170.5 6.7 154 135-306 1139-1320(1381)
378 COG4178 ABC-type uncharacteriz 99.6 2.1E-15 4.5E-20 157.5 6.4 156 135-306 393-560 (604)
379 COG0488 Uup ATPase components 99.6 1.4E-15 3.1E-20 158.5 4.4 137 138-307 325-485 (530)
380 PRK09563 rbgA GTPase YlqF; Rev 99.6 3.3E-14 7.2E-19 138.3 13.5 144 70-247 18-180 (287)
381 cd03270 ABC_UvrA_I The excisio 99.6 9.6E-16 2.1E-20 144.1 2.4 59 248-310 121-188 (226)
382 cd01855 YqeH YqeH. YqeH is an 99.5 5.1E-14 1.1E-18 128.4 12.3 146 73-243 31-190 (190)
383 KOG0059 Lipid exporter ABCA1 a 99.5 3E-15 6.6E-20 165.6 4.9 154 138-311 568-748 (885)
384 COG1160 Predicted GTPases [Gen 99.5 4.3E-14 9.4E-19 142.2 12.2 169 43-247 40-240 (444)
385 PTZ00243 ABC transporter; Prov 99.5 2.2E-15 4.8E-20 174.8 2.8 139 143-302 669-823 (1560)
386 COG4615 PvdE ABC-type sideroph 99.5 3.9E-15 8.5E-20 146.6 3.2 164 133-314 321-502 (546)
387 KOG0061 Transporter, ABC super 99.5 6E-15 1.3E-19 157.1 3.8 159 137-313 28-222 (613)
388 cd03272 ABC_SMC3_euk Eukaryoti 99.5 2.4E-14 5.3E-19 135.3 5.0 43 266-309 158-210 (243)
389 cd04178 Nucleostemin_like Nucl 99.5 7.1E-13 1.5E-17 119.7 14.3 136 78-243 1-172 (172)
390 KOG0054 Multidrug resistance-a 99.5 1.9E-14 4E-19 161.8 3.7 137 137-294 521-670 (1381)
391 cd03274 ABC_SMC4_euk Eukaryoti 99.5 5.9E-14 1.3E-18 130.8 5.5 144 143-308 13-178 (212)
392 KOG0060 Long-chain acyl-CoA tr 99.4 6E-14 1.3E-18 143.8 5.4 155 137-306 436-615 (659)
393 COG1161 Predicted GTPases [Gen 99.4 8.1E-13 1.7E-17 130.6 12.6 142 72-247 30-191 (322)
394 TIGR03597 GTPase_YqeH ribosome 99.4 2.3E-12 5E-17 129.3 15.0 157 75-260 62-233 (360)
395 COG1245 Predicted ATPase, RNas 99.4 1.5E-13 3.2E-18 137.7 6.2 182 158-363 366-556 (591)
396 PRK13796 GTPase YqeH; Provisio 99.4 3.5E-12 7.7E-17 128.2 15.7 155 79-262 72-241 (365)
397 cd03279 ABC_sbcCD SbcCD and ot 99.4 4.8E-13 1E-17 124.5 8.4 139 151-310 18-182 (213)
398 cd03273 ABC_SMC2_euk Eukaryoti 99.3 1.5E-12 3.2E-17 124.2 7.6 49 256-308 159-217 (251)
399 KOG0066 eIF2-interacting prote 99.3 1.5E-12 3.3E-17 129.8 7.3 143 135-308 587-751 (807)
400 KOG1424 Predicted GTP-binding 99.3 1.2E-11 2.6E-16 125.4 12.6 145 73-247 171-373 (562)
401 KOG0927 Predicted transporter 99.3 5.5E-13 1.2E-17 136.0 2.7 145 140-306 395-554 (614)
402 cd03240 ABC_Rad50 The catalyti 99.3 8.4E-12 1.8E-16 115.6 7.7 123 160-310 23-171 (204)
403 KOG0064 Peroxisomal long-chain 99.2 3E-12 6.6E-17 130.1 3.2 199 147-365 495-713 (728)
404 COG4138 BtuD ABC-type cobalami 99.2 5.8E-12 1.3E-16 112.5 3.5 143 150-310 15-181 (248)
405 cd03276 ABC_SMC6_euk Eukaryoti 99.2 2.7E-11 5.8E-16 111.8 7.8 138 150-309 12-161 (198)
406 COG4170 SapD ABC-type antimicr 99.2 1.7E-11 3.6E-16 112.4 6.0 163 138-313 7-210 (330)
407 cd03271 ABC_UvrA_II The excisi 99.2 8.3E-12 1.8E-16 119.9 4.2 57 250-310 155-221 (261)
408 COG2401 ABC-type ATPase fused 99.2 4.2E-11 9E-16 119.1 7.7 150 147-311 396-557 (593)
409 cd03275 ABC_SMC1_euk Eukaryoti 99.2 6.2E-11 1.3E-15 112.8 7.5 43 266-309 155-207 (247)
410 KOG2484 GTPase [General functi 99.1 1.8E-10 3.8E-15 114.0 9.9 148 71-248 141-312 (435)
411 KOG0065 Pleiotropic drug resis 99.1 1.7E-11 3.7E-16 135.9 2.6 149 145-313 802-982 (1391)
412 COG1245 Predicted ATPase, RNas 99.1 3.5E-11 7.7E-16 120.8 3.5 136 158-309 99-261 (591)
413 PRK00093 GTP-binding protein D 99.1 1.2E-09 2.5E-14 112.1 13.6 107 71-183 75-197 (435)
414 KOG2355 Predicted ABC-type tra 99.1 2.4E-10 5.2E-15 104.6 6.3 152 136-310 15-196 (291)
415 TIGR03594 GTPase_EngA ribosome 99.0 1.4E-09 3E-14 111.3 12.4 107 71-183 73-196 (429)
416 KOG0927 Predicted transporter 99.0 7.5E-11 1.6E-15 120.6 2.6 49 135-183 76-125 (614)
417 KOG0062 ATPase component of AB 99.0 1E-10 2.3E-15 118.9 3.3 46 136-181 82-128 (582)
418 PRK03003 GTP-binding protein D 99.0 2.3E-09 4.9E-14 111.4 12.7 107 71-183 112-235 (472)
419 COG1129 MglA ABC-type sugar tr 99.0 5E-10 1.1E-14 115.3 6.5 148 149-313 274-453 (500)
420 KOG2423 Nucleolar GTPase [Gene 99.0 6.2E-10 1.3E-14 109.9 6.6 109 73-183 210-331 (572)
421 PRK00635 excinuclease ABC subu 99.0 1.1E-09 2.3E-14 126.9 8.5 57 250-310 795-861 (1809)
422 PRK09518 bifunctional cytidyla 98.9 5.6E-09 1.2E-13 113.7 12.7 106 72-183 350-474 (712)
423 cd03277 ABC_SMC5_euk Eukaryoti 98.8 1.6E-08 3.6E-13 94.3 8.5 45 266-310 126-179 (213)
424 cd03239 ABC_SMC_head The struc 98.7 1.4E-08 3E-13 92.2 6.2 44 267-310 95-147 (178)
425 KOG0062 ATPase component of AB 98.7 2.9E-09 6.3E-14 108.5 1.8 137 149-306 379-527 (582)
426 cd00820 PEPCK_HprK Phosphoenol 98.7 7E-09 1.5E-13 86.3 3.1 50 147-214 2-52 (107)
427 COG3845 ABC-type uncharacteriz 98.7 1.2E-08 2.6E-13 103.8 5.4 148 148-313 272-455 (501)
428 TIGR00630 uvra excinuclease AB 98.7 6.4E-09 1.4E-13 115.2 3.0 44 266-310 828-880 (924)
429 TIGR03238 dnd_assoc_3 dnd syst 98.7 8.9E-09 1.9E-13 105.5 3.8 51 148-212 20-72 (504)
430 cd03280 ABC_MutS2 MutS2 homolo 98.7 1.8E-08 3.8E-13 92.9 5.4 42 266-309 91-139 (200)
431 PRK00349 uvrA excinuclease ABC 98.7 3.6E-08 7.9E-13 109.5 8.5 44 266-310 830-882 (943)
432 cd03227 ABC_Class2 ABC-type Cl 98.7 3E-08 6.5E-13 88.4 5.6 44 266-310 77-130 (162)
433 KOG0063 RNAse L inhibitor, ABC 98.6 2.8E-08 6E-13 99.6 2.7 114 159-295 367-484 (592)
434 TIGR02858 spore_III_AA stage I 98.5 8.4E-08 1.8E-12 92.7 5.3 41 160-212 112-152 (270)
435 cd03241 ABC_RecN RecN ATPase i 98.4 9.5E-08 2.1E-12 92.5 2.7 44 266-309 170-222 (276)
436 KOG2485 Conserved ATP/GTP bind 98.4 4.6E-07 1E-11 87.7 6.9 147 73-248 43-211 (335)
437 KOG0065 Pleiotropic drug resis 98.4 7.1E-07 1.5E-11 100.0 9.1 156 148-313 129-312 (1391)
438 cd04466 S1_YloQ_GTPase S1_YloQ 98.4 4.4E-07 9.6E-12 68.9 5.3 49 21-71 20-68 (68)
439 COG0218 Predicted GTPase [Gene 98.4 2.3E-07 5E-12 84.9 4.2 61 159-247 24-84 (200)
440 cd03242 ABC_RecF RecF is a rec 98.3 8.8E-07 1.9E-11 85.5 5.7 43 265-307 182-238 (270)
441 cd03282 ABC_MSH4_euk MutS4 hom 98.2 4E-07 8.7E-12 84.5 1.8 40 144-183 13-53 (204)
442 cd01130 VirB11-like_ATPase Typ 98.2 1.1E-06 2.5E-11 80.0 4.5 45 150-206 15-60 (186)
443 COG1159 Era GTPase [General fu 98.2 9.8E-07 2.1E-11 85.2 4.1 58 160-246 7-67 (298)
444 cd03243 ABC_MutS_homologs The 98.2 6.8E-07 1.5E-11 82.4 2.1 25 158-182 28-52 (202)
445 PF01926 MMR_HSR1: 50S ribosom 98.2 2.3E-06 5.1E-11 71.3 4.8 23 161-183 1-23 (116)
446 KOG0066 eIF2-interacting prote 98.2 2.4E-06 5.2E-11 86.1 5.4 49 135-183 265-314 (807)
447 PTZ00132 GTP-binding nuclear p 98.1 1.6E-06 3.4E-11 80.4 3.0 37 271-308 157-204 (215)
448 PF02463 SMC_N: RecF/RecN/SMC 98.1 5.8E-06 1.3E-10 76.9 6.5 48 266-313 136-192 (220)
449 COG0486 ThdF Predicted GTPase 98.1 4.1E-06 8.9E-11 85.3 5.0 60 158-246 216-278 (454)
450 PF13555 AAA_29: P-loop contai 98.1 3.9E-06 8.4E-11 62.9 3.5 28 156-183 20-47 (62)
451 PRK00300 gmk guanylate kinase; 98.0 6.1E-06 1.3E-10 75.8 4.2 26 158-183 4-29 (205)
452 cd03285 ABC_MSH2_euk MutS2 hom 98.0 3.2E-06 6.9E-11 79.4 2.3 37 145-181 15-52 (222)
453 PRK15494 era GTPase Era; Provi 98.0 7.4E-06 1.6E-10 81.8 4.8 47 137-183 21-76 (339)
454 cd03284 ABC_MutS1 MutS1 homolo 98.0 1.3E-05 2.7E-10 75.1 6.1 38 146-183 17-54 (216)
455 PRK08472 fliI flagellum-specif 97.9 7.7E-06 1.7E-10 83.9 4.6 37 146-183 144-181 (434)
456 TIGR00436 era GTP-binding prot 97.9 9.7E-06 2.1E-10 78.2 5.0 23 161-183 2-24 (270)
457 PRK10078 ribose 1,5-bisphospho 97.9 8.9E-06 1.9E-10 74.0 4.2 25 159-183 2-26 (186)
458 cd03283 ABC_MutS-like MutS-lik 97.9 5.1E-06 1.1E-10 76.8 2.4 37 146-183 13-49 (199)
459 cd03281 ABC_MSH5_euk MutS5 hom 97.9 2.2E-05 4.8E-10 73.3 6.6 36 273-309 97-139 (213)
460 PRK06002 fliI flagellum-specif 97.9 7.1E-06 1.5E-10 84.3 3.5 81 138-232 143-228 (450)
461 PRK00635 excinuclease ABC subu 97.9 6.3E-05 1.4E-09 88.2 11.2 48 266-313 1699-1754(1809)
462 cd01853 Toc34_like Toc34-like 97.9 1.7E-05 3.6E-10 75.9 5.5 25 159-183 31-55 (249)
463 PRK06793 fliI flagellum-specif 97.9 1.4E-05 3E-10 81.9 5.2 48 148-208 145-193 (432)
464 PRK12298 obgE GTPase CgtA; Rev 97.9 1.7E-05 3.7E-10 80.6 5.8 23 161-183 161-183 (390)
465 PF02421 FeoB_N: Ferrous iron 97.9 1.4E-05 3E-10 71.1 4.5 23 161-183 2-24 (156)
466 cd01852 AIG1 AIG1 (avrRpt2-ind 97.9 1.4E-05 2.9E-10 73.2 4.3 23 161-183 2-24 (196)
467 PRK09825 idnK D-gluconate kina 97.9 1.2E-05 2.6E-10 72.8 3.8 26 158-183 2-27 (176)
468 PRK09862 putative ATP-dependen 97.8 1.8E-05 4E-10 82.7 5.3 60 138-209 188-248 (506)
469 PRK07721 fliI flagellum-specif 97.8 1.6E-05 3.4E-10 81.9 4.4 50 147-209 146-196 (438)
470 PRK08149 ATP synthase SpaL; Va 97.8 1E-05 2.2E-10 82.8 3.0 56 146-214 138-197 (428)
471 PRK00089 era GTPase Era; Revie 97.8 2.2E-05 4.9E-10 76.3 5.1 24 160-183 6-29 (292)
472 cd01876 YihA_EngB The YihA (En 97.8 2.4E-05 5.3E-10 67.7 4.7 20 162-181 2-21 (170)
473 PRK00454 engB GTP-binding prot 97.8 3E-05 6.6E-10 70.0 5.4 23 160-182 25-47 (196)
474 KOG1191 Mitochondrial GTPase [ 97.8 1.9E-05 4E-10 80.8 4.2 59 158-245 267-328 (531)
475 COG0178 UvrA Excinuclease ATPa 97.8 0.00019 4.1E-09 77.5 11.2 39 140-178 607-646 (935)
476 cd04164 trmE TrmE (MnmE, ThdF, 97.7 4E-05 8.6E-10 65.9 5.1 25 159-183 1-25 (157)
477 cd00879 Sar1 Sar1 subfamily. 97.7 3.1E-05 6.8E-10 69.8 4.4 35 149-183 9-43 (190)
478 TIGR03598 GTPase_YsxC ribosome 97.7 4.7E-05 1E-09 68.4 5.5 25 159-183 18-42 (179)
479 TIGR01069 mutS2 MutS2 family p 97.7 1.8E-05 3.9E-10 86.9 3.0 42 266-309 385-433 (771)
480 COG1084 Predicted GTPase [Gene 97.7 9.8E-05 2.1E-09 72.3 7.7 63 159-251 168-233 (346)
481 TIGR03263 guanyl_kin guanylate 97.7 2.7E-05 5.9E-10 69.9 3.5 25 159-183 1-25 (180)
482 cd04155 Arl3 Arl3 subfamily. 97.7 3.6E-05 7.8E-10 68.0 4.1 25 159-183 14-38 (173)
483 TIGR00235 udk uridine kinase. 97.7 1.9E-05 4.1E-10 73.0 2.3 26 158-183 5-30 (207)
484 KOG0063 RNAse L inhibitor, ABC 97.7 8.9E-06 1.9E-10 82.0 0.0 131 158-304 99-250 (592)
485 cd04104 p47_IIGP_like p47 (47- 97.7 3.5E-05 7.6E-10 70.7 3.9 23 161-183 3-25 (197)
486 PRK09270 nucleoside triphospha 97.7 2.7E-05 5.8E-10 73.3 3.0 33 158-202 32-64 (229)
487 PRK07196 fliI flagellum-specif 97.7 2.3E-05 4.9E-10 80.4 2.6 36 147-183 143-179 (434)
488 TIGR02788 VirB11 P-type DNA tr 97.6 4.6E-05 1E-09 75.1 4.5 43 151-205 135-178 (308)
489 cd01898 Obg Obg subfamily. Th 97.6 4.8E-05 1.1E-09 66.8 4.1 52 162-243 3-58 (170)
490 TIGR02322 phosphon_PhnN phosph 97.6 3.4E-05 7.3E-10 69.4 2.9 25 159-183 1-25 (179)
491 smart00534 MUTSac ATPase domai 97.6 2.1E-05 4.6E-10 71.5 1.4 19 162-180 2-20 (185)
492 cd01128 rho_factor Transcripti 97.6 6.2E-05 1.4E-09 72.0 4.6 26 158-183 15-40 (249)
493 TIGR00554 panK_bact pantothena 97.6 3.6E-05 7.7E-10 75.2 2.8 24 160-183 63-86 (290)
494 cd04163 Era Era subfamily. Er 97.6 0.0001 2.2E-09 63.5 5.3 54 161-243 5-61 (168)
495 cd01136 ATPase_flagellum-secre 97.6 4.3E-05 9.2E-10 75.8 3.3 47 147-206 57-104 (326)
496 PF04548 AIG1: AIG1 family; I 97.6 6.6E-05 1.4E-09 69.9 4.4 23 161-183 2-24 (212)
497 PF10662 PduV-EutP: Ethanolami 97.6 7.4E-05 1.6E-09 65.4 4.2 44 160-242 2-45 (143)
498 PRK09099 type III secretion sy 97.6 5E-05 1.1E-09 78.1 3.7 50 146-208 150-200 (441)
499 PLN02796 D-glycerate 3-kinase 97.6 4.7E-05 1E-09 75.8 3.3 36 148-183 80-124 (347)
500 cd04159 Arl10_like Arl10-like 97.6 4.4E-05 9.4E-10 65.4 2.5 22 162-183 2-23 (159)
No 1
>PRK12289 GTPase RsgA; Reviewed
Probab=100.00 E-value=2.1e-62 Score=486.39 Aligned_cols=318 Identities=49% Similarity=0.877 Sum_probs=292.0
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..++|..|+++++.+..++|||||.++..+|.+.+|+|++|+||+|.+.||++||+|++++|+++..|.+++..|+|||
T Consensus 34 ~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L 113 (352)
T PRK12289 34 PSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFL 113 (352)
T ss_pred ceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHH
Confidence 45799999999998888899999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+.++..++++++|+||+||+++++.+.|...|..+||+++.+|..++.+++.|.-.+.+++++|+|+||||||||||.|.
T Consensus 114 ~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 114 VKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred HHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHc
Confidence 99999999999999999999887778888888999999999999999999999888889999999999999999999999
Q ss_pred cCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhc
Q 016339 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260 (391)
Q Consensus 181 gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~ 260 (391)
+.. ...++.++...++|+|||+++.++.++.+++++||||++.+.+ .+..+++...|
T Consensus 194 ~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l-~~~~~~l~~~F 250 (352)
T PRK12289 194 PDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL-DCSPRELAHYF 250 (352)
T ss_pred Ccc----------------------ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc-ccCHHHHHhhH
Confidence 877 3567788888999999999999999987889999999999988 57778899999
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCC
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEP 340 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 340 (391)
|++...++. ..|.|.+|.|.+||+|+|..+|+||++|+++++++....+..++ +.++|..+++|++.+|++++||
T Consensus 251 ~e~~~~~~~---~~CrF~dC~H~~EPgCaV~~~~~Ry~~Y~~l~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 325 (352)
T PRK12289 251 PEARQRLAQ---GNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQLQQ--SADEESTLKLKIKASGQERYEP 325 (352)
T ss_pred HHHHHhHhh---CceEccCCccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHhhc--CccccccceeeecCCCcccccc
Confidence 999887631 48999999999999999999999999999999998776665554 6799999999999999999999
Q ss_pred ccccccccccchhhhhHHHHHHHhhc
Q 016339 341 RLEPKKHRRQSRKRINQSILDELDEL 366 (391)
Q Consensus 341 ~~~~~~~~r~~rr~~~~~~~~~~~~~ 366 (391)
++++|+|||.|||+.+|++++.+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
T PRK12289 326 KLESKKYRRPSRRQQHQDLQDLYENQ 351 (352)
T ss_pred ccccccccchhHHHHHHHHHHHhhcc
Confidence 99999999999999999998877653
No 2
>COG1162 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.2e-52 Score=398.49 Aligned_cols=262 Identities=41% Similarity=0.712 Sum_probs=243.1
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHH
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r 98 (391)
..+..+.|..|+.|++....++|||||.++...+. |+|+.|++|+|.+.||++||+|++++|+++..|.|++.+|+|
T Consensus 25 ~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~~~---g~I~~i~~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR 101 (301)
T COG1162 25 VDGEVYRCRARGNLRKKDLKPVVGDRVVFEDENNN---GVIEKILPRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDR 101 (301)
T ss_pred cccceeeeeeecceeccCccccccCeEEEecCCCc---ceEEEEecccCceeCCcccccceEEEEEeccCCCCCHHHHHH
Confidence 34557999999999988899999999999976533 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCHHHHH--HHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 99 FLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 99 ~L~~a~~~~~~~~lvlnK~Dl~~~~~~~--~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
||+.|++.|+.+++|+||+||+++++.. .+...|..+||+.+.+|..+..+++.+...++|++++|+|+||+||||||
T Consensus 102 ~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLi 181 (301)
T COG1162 102 YLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLI 181 (301)
T ss_pred HHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHH
Confidence 9999999999999999999999887665 46778888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l 256 (391)
|.|.+.. .+.++.+++..++|+|||++..++.++.+|+++|||||+...++.+..+++
T Consensus 182 N~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l 239 (301)
T COG1162 182 NALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDL 239 (301)
T ss_pred HhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHH
Confidence 9999976 578999999999999999999999998899999999999999988899999
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~ 310 (391)
...||++...++ .|.|..|.|.+||+|.|.. ++.||+.|++++.++...
T Consensus 240 ~~~F~ef~~~~~-----~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kll~el~~~ 295 (301)
T COG1162 240 VQAFPEFAELAR-----QCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELSGN 295 (301)
T ss_pred HHHhHHHHHHhc-----CCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999998875 8999999999999999986 679999999999998743
No 3
>PRK12288 GTPase RsgA; Reviewed
Probab=100.00 E-value=6e-47 Score=375.65 Aligned_cols=260 Identities=32% Similarity=0.574 Sum_probs=230.1
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceeccc--CceeEEEEeecccccccccc--------ccccceeEEEEEecC
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV--DRRGMIENVFQRSTEILDPP--------VANVDHLLLLFSMDQ 88 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~--~~~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~~ 88 (391)
..|..+.|..|+.++ .++|||||.++..+-. ...|+|++|+||++.+.||. |||+|++++|+++ .
T Consensus 57 ~~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~~q~iaANvD~vlIV~s~-~ 131 (347)
T PRK12288 57 ADGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGVKPIAANIDQIVIVSAV-L 131 (347)
T ss_pred CCCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCcccccceEEEEccEEEEEEeC-C
Confidence 456678999999885 3999999999753211 12489999999999999876 7999999999997 5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH---HHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEE
Q 016339 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165 (391)
Q Consensus 89 p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~---~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLv 165 (391)
|.+++..++|||+.++..++++++|+||+||.++. ....|...|..+||+.+.+|..++.+++.+...+.+++++|+
T Consensus 132 p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ki~~~v 211 (347)
T PRK12288 132 PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGRISIFV 211 (347)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhCCEEEE
Confidence 99999999999999999999999999999998754 245677778889999999999999999999888888999999
Q ss_pred ecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccch
Q 016339 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245 (391)
Q Consensus 166 GpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~ 245 (391)
|+||||||||||+|+|.. ...++.++...++|+|||++..++.+..++.++||||++.
T Consensus 212 G~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~ 269 (347)
T PRK12288 212 GQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE 269 (347)
T ss_pred CCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence 999999999999999987 4567888988999999999999999987888999999999
Q ss_pred HHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHH
Q 016339 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 246 ~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~ 310 (391)
..+..+..+++...||+|.... +.|.|.+|.|.+||+|+|.. ++.||++|+++++++...
T Consensus 270 ~~l~~~~~~~l~~~F~ei~~~~-----~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y~~l~~e~~~~ 336 (347)
T PRK12288 270 FGLWHLEPEQVTQGFVEFRDYL-----GTCKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRILESMAEV 336 (347)
T ss_pred ccCCCCCHHHHHHhhHHHHHHh-----cCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9998888889999999998876 47999999999999999986 789999999999998753
No 4
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=100.00 E-value=4.2e-45 Score=354.80 Aligned_cols=255 Identities=44% Similarity=0.710 Sum_probs=225.2
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccccccccc--------ccccceeEEEEEecCCCCC
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------VANVDHLLLLFSMDQPKLE 92 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~~p~~~ 92 (391)
+..+.|.+|+.+++.+..++|||||.++..+ ++.++|++|+||+|.+.||. +||+|++++|+++..|.++
T Consensus 17 ~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s 94 (287)
T cd01854 17 GGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFN 94 (287)
T ss_pred CeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCC
Confidence 6689999999998766789999999998654 56799999999999999998 9999999999999988889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcH
Q 016339 93 PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGK 172 (391)
Q Consensus 93 ~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGK 172 (391)
+..+++||..++..++++++|+||+||.++.+...|...+..+||+.+.+|..++.+++.+...+.+++++|+|+|||||
T Consensus 95 ~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GK 174 (287)
T cd01854 95 PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGK 174 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccceEEEECCCCCCH
Confidence 99999999999999999999999999987755555666667789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCC
Q 016339 173 SSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252 (391)
Q Consensus 173 STLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~ 252 (391)
|||||+|.|.. .+.. +.++...++|+|+|++..++.+..+++++||||+....+..+.
T Consensus 175 STlin~l~~~~------------~~~~----------g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 232 (287)
T cd01854 175 STLINALLPDL------------DLAT----------GEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHID 232 (287)
T ss_pred HHHHHHHhchh------------hccc----------cceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCC
Confidence 99999999987 3333 3445556788999999999988877899999999987766778
Q ss_pred hhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHH
Q 016339 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLL 304 (391)
Q Consensus 253 ~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll 304 (391)
..++.+.||++.... ..|.|.+|.|.+||+|.|.+ +..||++|++++
T Consensus 233 ~~~~~~~f~~~~~~~-----~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~l~ 286 (287)
T cd01854 233 PEELAHYFPEFRELA-----GQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLKLL 286 (287)
T ss_pred HHHHHHHhHHHHHHh-----CCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 889999999988765 47999999999999999987 678999999886
No 5
>PRK00098 GTPase RsgA; Reviewed
Probab=100.00 E-value=1.1e-43 Score=346.59 Aligned_cols=261 Identities=40% Similarity=0.663 Sum_probs=231.2
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccc-------cccceeEEEEEecCCCCC
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV-------ANVDHLLLLFSMDQPKLE 92 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~-------anvD~~liv~s~~~p~~~ 92 (391)
.+..+.|.+||.+++.+..++|||||.++.. .++.|.|++|+||++.+.||.+ ||+|++++|+++..|.++
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~ 96 (298)
T PRK00098 19 DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFS 96 (298)
T ss_pred CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccceeecCCEEEEEEECCCCCCC
Confidence 3568999999999876677999999999753 3567999999999999999987 999999999999889999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCC-CHHHHHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCc
Q 016339 93 PFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171 (391)
Q Consensus 93 ~~~l~r~L~~a~~~~~~~~lvlnK~Dl~-~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsG 171 (391)
...+++||..++..++++++|+||+||. +......|...+..+|++.+.+|..++.+++.+.-.+.|++++|+|+||||
T Consensus 97 ~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvG 176 (298)
T PRK00098 97 TDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVG 176 (298)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCC
Confidence 9999999999999999999999999997 444455677777889999999999999999999888899999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhC
Q 016339 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251 (391)
Q Consensus 172 KSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~ 251 (391)
||||||+|+|.. . ..++.++...++|+|||++..++....+++++||||+....+..+
T Consensus 177 KStlin~l~~~~------------~----------~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 234 (298)
T PRK00098 177 KSTLLNALAPDL------------E----------LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDL 234 (298)
T ss_pred HHHHHHHHhCCc------------C----------CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCC
Confidence 999999999987 2 334566667789999999999988887889999999998888777
Q ss_pred ChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 252 TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 252 ~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
..+++...||++...++ .|.|.+|.|.++|+|.|.. ++.||++|+++++|+..
T Consensus 235 ~~~~~~~~f~~~~~~~~-----~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~y~~l~~e~~~ 294 (298)
T PRK00098 235 EAEELEHYFPEFRPLSG-----DCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQILEEIEN 294 (298)
T ss_pred CHHHHHHHHHHHHHHhC-----CCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 88899999999888774 7999999999999999986 78999999999999865
No 6
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=100.00 E-value=4.8e-44 Score=339.95 Aligned_cols=236 Identities=40% Similarity=0.653 Sum_probs=213.0
Q ss_pred ceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Q 016339 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (391)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~D 118 (391)
++|||||.++..++ +.|+|++|++|.+.+.||.++|+|++++|+++..|.++...+++|+..++..++++++|+||+|
T Consensus 1 ~~vGD~V~~~~~~~--~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGNV--VKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecCC--CceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 58999999986543 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHH-HHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC
Q 016339 119 LVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (391)
Q Consensus 119 l~~~~~~-~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p 197 (391)
|.++.+. ..|...+.++||+.+.+|..++.+++.+-..+.+++++|+|+||+|||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 9865443 3566778889999999999999999998888889999999999999999999999987
Q ss_pred CCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 198 ~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
...++.++...++|+|||++..++.+ .+++++||||++...+..+..+++...||++....+ .|.|
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~-----~C~f 210 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLG-----ECKF 210 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhC-----CCCC
Confidence 45677888888999999999999888 577999999999999988888899999999887764 7999
Q ss_pred ccccccCCCcEEEec-------CHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG-------DWERYQYYFQLL 304 (391)
Q Consensus 278 aralh~~eP~~lllD-------D~~~~~~~~~ll 304 (391)
.+|.|.+||+|.|.. ++.||+.|++++
T Consensus 211 ~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~~~ 244 (245)
T TIGR00157 211 RDCLHQSEPGCAVRQAVEQGEISEWRYENYLKLI 244 (245)
T ss_pred CCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHh
Confidence 999999999999987 678999999886
No 7
>PRK01889 GTPase RsgA; Reviewed
Probab=100.00 E-value=5.2e-40 Score=327.83 Aligned_cols=257 Identities=31% Similarity=0.476 Sum_probs=213.3
Q ss_pred cEEEEEecccccc----cCCCceeCcEEEEceecccCceeEEEEeecccccccccc----------ccccceeEEEEEec
Q 016339 22 VELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSMD 87 (391)
Q Consensus 22 ~~~~c~~r~~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~----------~anvD~~liv~s~~ 87 (391)
..+.|.++++++. ....++|||||.++. ++.|+|++|+||+|.+.||+ |||||++++|++++
T Consensus 48 ~~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~ 123 (356)
T PRK01889 48 GEVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAGTRSEEQLIAANVDTVFIVCSLN 123 (356)
T ss_pred cEEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCCCCccceeEEEeCCEEEEEEecC
Confidence 4578999998864 234589999999974 45799999999999999986 69999999999995
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcc-cCCEEEEE
Q 016339 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIV 165 (391)
Q Consensus 88 ~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLv 165 (391)
|.+++..++|||+.|+..|+++++|+||+||+++.+ ...|...+ ..||+++.+|..++.+++.|...+ +|++++|+
T Consensus 124 -p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lv 201 (356)
T PRK01889 124 -HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVLAAWLSGGKTVALL 201 (356)
T ss_pred -CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHHHHHhhcCCEEEEE
Confidence 899999999999999999999999999999987632 22333333 568999999999999999999999 68999999
Q ss_pred ecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccch
Q 016339 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245 (391)
Q Consensus 166 GpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~ 245 (391)
|+||+|||||+|+|+|.. .+..|+|.+++. .++|+|++..+.....+++++||||+..
T Consensus 202 G~sgvGKStLin~L~g~~------------~~~~G~i~~~~~----------~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 202 GSSGVGKSTLVNALLGEE------------VQKTGAVREDDS----------KGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CCCCccHHHHHHHHHHhc------------ccceeeEEECCC----------CCcchhhhccEEEecCCCeecCCCchhh
Confidence 999999999999999998 788888876542 3456665555555555678999999988
Q ss_pred HHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHHHHh
Q 016339 246 PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 246 ~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~~~~ 312 (391)
..+... ...+...||++.... ..|.|..|.|..+|+|.|.. +..+|..|+++++|+.....
T Consensus 260 ~~l~~~-~~~l~~~f~~~~~~~-----~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e~~~~~~ 327 (356)
T PRK01889 260 LQLWDA-EDGVEETFSDIEELA-----AQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQREQAYNAA 327 (356)
T ss_pred hcccCc-hhhHHHhHHHHHHHH-----ccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 776543 255778899877654 47999999999999999986 67899999999999876443
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-32 Score=255.70 Aligned_cols=200 Identities=18% Similarity=0.153 Sum_probs=162.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc------
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR------ 208 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~------ 208 (391)
.++.+.++|++..+|+++|+++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|..
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~------------~p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE------------KPTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCcccCCCCC
Confidence 3578899999999999999999 99999999999999999999999999 9999999999874
Q ss_pred -ccccccccCCCccee--eeEEEEeccCCCc-ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 209 -VGEVSTKSGRGKHTT--RHVSLLPLSGGGY-LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 209 -v~~v~~~~~~~~~tt--r~i~~v~~~~~~~-l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++.++|...+.++.| .|+.+ .+...+. -.+........+..+++.+..++||. +||||||||++||||+ +.
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l-~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~---qLSGGMrQRVaiARAL-~~ 147 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVAL-GLELRGKSKAEARERAKELLELVGLAGFEDKYPH---QLSGGMRQRVAIARAL-AT 147 (248)
T ss_pred CEEEEeccCcccchhhHHhhhee-hhhccccchHhHHHHHHHHHHHcCCcchhhcCcc---ccChHHHHHHHHHHHH-hc
Confidence 466777777777766 55544 2222221 11112245566788999999999999 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhcccccccccccccCcccccCCccccccccccch
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSR 352 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~r 352 (391)
+|+++++| |.-....+.+.+.++.++... .+.|++.+++..+..++..++..|+......+.....+|
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR 223 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR 223 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc
Confidence 99999999 788899999999999887666 567888888888888888888887666555555555554
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.6e-32 Score=264.37 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=141.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++|+.+ +|++++|+||||||||||||+|+|++ +|++|+|.|+|.+++.++
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe------------~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE------------EPTSGEILIDGRDVTDLP 71 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCC
Confidence 45688999999877999999999 89999999999999999999999999 999999999999998877
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCccc---------------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGF---------------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~---------------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
+. .|+++++||++..| +.++-+| .......++++++++++|. +|||||+||
T Consensus 72 P~-------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~---~LSGGQrQR 141 (338)
T COG3839 72 PE-------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL---QLSGGQRQR 141 (338)
T ss_pred hh-------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc---cCChhhHHH
Confidence 63 47899999986554 3444322 1233457789999999999 999999999
Q ss_pred cccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCCccccccccccchhh
Q 016339 275 CSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKR 354 (391)
Q Consensus 275 ~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~ 354 (391)
|++|||+ +.+|+++++| ||++++|+++|.++|.
T Consensus 142 VAlaRAl-Vr~P~v~L~D----------------------------------------------EPlSnLDa~lR~~mr~ 174 (338)
T COG3839 142 VALARAL-VRKPKVFLLD----------------------------------------------EPLSNLDAKLRVLMRS 174 (338)
T ss_pred HHHHHHH-hcCCCEEEec----------------------------------------------CchhHhhHHHHHHHHH
Confidence 9999999 9999999999 9999999999999999
Q ss_pred hhHHHHHHHh
Q 016339 355 INQSILDELD 364 (391)
Q Consensus 355 ~~~~~~~~~~ 364 (391)
++.++|+++.
T Consensus 175 ei~~lh~~l~ 184 (338)
T COG3839 175 EIKKLHERLG 184 (338)
T ss_pred HHHHHHHhcC
Confidence 9999998873
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=244.26 Aligned_cols=162 Identities=23% Similarity=0.266 Sum_probs=127.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG---- 210 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~---- 210 (391)
.++++.++|++..+|++|++++ +|++++|+|||||||||||++|.++. .|++|+|+++|..+.
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE------------~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE------------EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc------------CCCCceEEECCEeccchhh
Confidence 3578999999999999999999 99999999999999999999999999 999999999996553
Q ss_pred ---------ccccccCCCccee--eeEEEEeccCCCc-ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 211 ---------EVSTKSGRGKHTT--RHVSLLPLSGGGY-LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 211 ---------~v~~~~~~~~~tt--r~i~~v~~~~~~~-l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
.|+|...+++|.| .|+.+-+..-.+. ..+........|..+++.+-++.||. +|||||||||+||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~---qLSGGQqQRVAIA 148 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA---QLSGGQQQRVAIA 148 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc---ccCcHHHHHHHHH
Confidence 3444444444443 3332222111110 00011122345678899999999999 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||| +.+|+++++| ||+...++++.+.+|.++.-+
T Consensus 149 RAL-aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 149 RAL-AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred HHH-cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCe
Confidence 999 9999999999 999999999999999877543
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-30 Score=256.77 Aligned_cols=160 Identities=17% Similarity=0.286 Sum_probs=138.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++|+.| +|++++|+|||||||||||++|+|+. .|++|+|+++|+++..++
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe------------~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE------------QPSSGEILLDGEDITDVP 73 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCC
Confidence 34688999999999999999999 89999999999999999999999999 999999999999887666
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC----------------cccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT----------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
. ..|++.++||++..+ +.++ .......+..+++.++++++|. +|||||+|
T Consensus 74 p-------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~---qLSGGQqQ 143 (352)
T COG3842 74 P-------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH---QLSGGQQQ 143 (352)
T ss_pred h-------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh---hhChHHHH
Confidence 5 245666666665433 2232 1133455677889999999999 99999999
Q ss_pred ccccccccccCCCcEEEecCHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccCcccccCCccccccccccchh
Q 016339 274 KCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRK 353 (391)
Q Consensus 274 r~~iaralh~~eP~~lllDD~~~~~~~~~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr 353 (391)
|+++|||| +.+|+++++| ||.++++.++|..+|
T Consensus 144 RVALARAL-~~~P~vLLLD----------------------------------------------EPlSaLD~kLR~~mr 176 (352)
T COG3842 144 RVALARAL-VPEPKVLLLD----------------------------------------------EPLSALDAKLREQMR 176 (352)
T ss_pred HHHHHHHh-hcCcchhhhc----------------------------------------------CcccchhHHHHHHHH
Confidence 99999999 9999999999 999999999999999
Q ss_pred hhhHHHHHHH
Q 016339 354 RINQSILDEL 363 (391)
Q Consensus 354 ~~~~~~~~~~ 363 (391)
.+..++|.++
T Consensus 177 ~Elk~lq~~~ 186 (352)
T COG3842 177 KELKELQREL 186 (352)
T ss_pred HHHHHHHHhc
Confidence 9999999887
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-29 Score=236.37 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=146.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV----- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v----- 209 (391)
.|+++++.|++..+++++||+| +|++++|+|||||||||+|++|.++. +|++|+|+|+|.++
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi------------ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI------------EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc------------CCCCceEEECCeecccCCH
Confidence 4789999999999999999999 89999999999999999999999999 99999999999764
Q ss_pred -------cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh--hHHhhhchhHHhhcCcccccccccc
Q 016339 210 -------GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK--QSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 210 -------~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~--~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
+++-|..+++||.| +|+++++.-.+..-........+.+..+++ .+++++||. +||||||||+.+|
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---eLSGGQQQRVGv~ 147 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---ELSGGQQQRVGVA 147 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---hcCcchhhHHHHH
Confidence 66677778888887 778777754332111112223444555555 468999999 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhccccccccccccc
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGD 332 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~ 332 (391)
||+ +.+|+++++| ||..+..+.+.+.++.+.... .+.+++.+++-.+..++..
T Consensus 148 RAL-AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 148 RAL-AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred HHH-hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 999 9999999999 899999999999999877666 4566666665555555433
No 13
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.95 E-value=1.1e-28 Score=219.10 Aligned_cols=153 Identities=46% Similarity=0.833 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 126 ~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
+.|.+.|+++||+++.+|..+..+++.+.-.+++++++|+|+||||||||||.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 4677889999999999999999999999999999999999999999999999999986
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
.+.++.++...++|+|||++..++.++.+++++||||++...+..+..+++...||++....+ .|.|.+|.|.+|
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~-----~CkF~~C~H~~E 134 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAG-----QCKFRDCTHIHE 134 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTT-----HSSSTTTTSSSS
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccC-----CCCccCCCCCCC
Confidence 467788999989999999999999998899999999999999988889999999999988764 899999999999
Q ss_pred CcEEEec-------CHHHHHHHHHHHH
Q 016339 286 PGCVVKG-------DWERYQYYFQLLD 305 (391)
Q Consensus 286 P~~lllD-------D~~~~~~~~~ll~ 305 (391)
|+|+|.. ++.||+.|+++++
T Consensus 135 p~CaV~~av~~g~i~~~Ry~~Y~~l~~ 161 (161)
T PF03193_consen 135 PGCAVKAAVENGEISPERYESYLKLLD 161 (161)
T ss_dssp TT-HHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CCChHHHHHHCCCCcHHHHHHHHHHhC
Confidence 9999986 6789999999874
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=7.7e-29 Score=222.06 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=136.9
Q ss_pred CCeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.|++|++.|..+. +|++|||.+ +|+++-|+|||||||||||++|.+.. +|++|+|+++|.+++.+.
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e------------~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE------------RPTRGKILVNGHDLSRLK 70 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh------------cCCCceEEECCeeccccc
Confidence 4678888997666 999999999 99999999999999999999999999 999999999999998887
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.+ .-++.+++++++||++... ++|+- |. ....|..+++.+-++.+|. +||||||||
T Consensus 71 ~~--~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---~LSGGEQQR 145 (223)
T COG2884 71 GR--EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---QLSGGEQQR 145 (223)
T ss_pred cc--ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---ccCchHHHH
Confidence 63 4466789999999997542 34441 11 2234667788888889999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++||||+ ++.|.+++.| ||.....+++++++++....+
T Consensus 146 vaIARAi-V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 146 VAIARAI-VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred HHHHHHH-ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 9999999 9999999999 999999999999999876544
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.1e-28 Score=227.86 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=136.7
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+++.+.|+.+ .+|++++|.+ +|++++|+||||||||||||+|.|+. .|++|.++|+|.++..
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld------------~pt~G~v~i~g~d~~~ 71 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD------------KPTSGEVLINGKDLTK 71 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEcCc
Confidence 46777877654 6899999999 99999999999999999999999999 9999999999999887
Q ss_pred cccccCCCcceeeeEEEEeccCCCcc----cCC-------cccc--------hHHHHhCChhHHhh-hchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGFN--------QPSLLKVTKQSLAQ-TFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~~--------~~~l~~~~~~~l~~-~~p~~~~~LSgGq 271 (391)
.+... +.....++++++||.++..- .++ ++.. ...+..+++.+... ++|. +|||||
T Consensus 72 l~~~~-~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~---eLSGGq 147 (226)
T COG1136 72 LSEKE-LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS---ELSGGQ 147 (226)
T ss_pred CCHHH-HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch---hcCHHH
Confidence 76532 22234578999999976531 111 1111 12233457775555 8899 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh-----hhhhhhccccccccccccc
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF-----QLRTFGTKREGDVRYKVGD 332 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~-----~~~~~~~~~~~~~~~~~~~ 332 (391)
|||++||||+ +++|++++.| |.++...+++++.++.++... +|...-+.++.++.+..++
T Consensus 148 qQRVAIARAL-~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 148 QQRVAIARAL-INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHHHHHHH-hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 9999999999 9999999999 889999999999999877543 3333334455555444443
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.5e-28 Score=230.02 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=134.3
Q ss_pred CeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
++.+++.|.. ..++++||++| +|++++|+|.|||||||||++|.++. .|++|+|.++|.++.
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le------------~PtsG~v~v~G~di~ 71 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE------------RPTSGSVFVDGQDLT 71 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC------------CCCCceEEEcCEecc
Confidence 4677777765 46999999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc----cCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.++... -+..+++++|+||.|+..- .++ .+. ..+.++.+++.+.++.||. +|||||
T Consensus 72 ~l~~~~--Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~---qLSGGQ 146 (339)
T COG1135 72 ALSEAE--LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA---QLSGGQ 146 (339)
T ss_pred cCChHH--HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch---hcCcch
Confidence 776642 2334688999999977542 222 122 2234667888899999999 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||||+||||| +.+|++++.| ||+...+++++|.+++++...
T Consensus 147 KQRVaIARAL-a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl 193 (339)
T COG1135 147 KQRVAIARAL-ANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193 (339)
T ss_pred hhHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC
Confidence 9999999999 9999999999 999999999999999887554
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=2.5e-27 Score=224.69 Aligned_cols=185 Identities=21% Similarity=0.271 Sum_probs=144.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..++++++|++..+++++||.+ +|++++|+|||||||||||++|+|+. +|.+|+|+++|.++...+.
T Consensus 4 ~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l------------~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 4 EVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL------------KPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred EEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCCchhhcCH
Confidence 4578999999999999999999 89999999999999999999999999 9999999999998877665
Q ss_pred ccCCCcceeeeEEEEeccC----CCcccC------Cc--------c-----cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSG----GGYLAD------TP--------G-----FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~----~~~l~D------tp--------g-----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+. ..+.+++++|.. +..+.| .| . .....+..+++.+++++.-. +|||||
T Consensus 72 ke-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~---~LSGGe 143 (258)
T COG1120 72 KE-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD---ELSGGE 143 (258)
T ss_pred HH-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc---ccChhH
Confidence 43 456777777762 111111 11 1 12334667888888888777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh----hhh--hhhcccccccccccccCcccccC
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF----QLR--TFGTKREGDVRYKVGDMGVQQAE 339 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~e 339 (391)
+||+.||||+ +.+|+++++| |....-.+++++.++.++... .++ .++...|.++.....+.-...+.
T Consensus 144 rQrv~iArAL-aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARAL-AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHH-hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 9999999999 9999999999 788999999999999866444 222 23556666666655554455555
Q ss_pred Cc
Q 016339 340 PR 341 (391)
Q Consensus 340 ~~ 341 (391)
|.
T Consensus 223 p~ 224 (258)
T COG1120 223 PE 224 (258)
T ss_pred cc
Confidence 54
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.6e-27 Score=218.32 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCeeEEEEcCCcc----chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~~~----~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
..+++.+.|+.+. ++++|||++ +|++++|+|+||||||||.++|+|+. +|++|+|.++|..+.
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~------------~p~~G~I~~~G~~~~ 72 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE------------KPSSGSILLDGKPLA 72 (252)
T ss_pred EEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc------------CCCCceEEECCcccC
Confidence 3578899998888 999999999 99999999999999999999999999 999999999997664
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc---------cCCccc----------chHHHHhCCh-hHHhhhchhHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL---------ADTPGF----------NQPSLLKVTK-QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l---------~Dtpg~----------~~~~l~~~~~-~~l~~~~p~~~~~LSgG 270 (391)
.... .+...+.++++||+..+.+ +..|-. ....+..+++ .+.++++|. +||||
T Consensus 73 ~~~~----~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~---eLSGG 145 (252)
T COG1124 73 PKKR----AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH---ELSGG 145 (252)
T ss_pred cccc----chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch---hcChh
Confidence 3221 1125678999999843321 112222 2345666766 467899999 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|+||++||||+ ..+|+++|+| |......++++|.+++++...
T Consensus 146 Q~QRiaIARAL-~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l 193 (252)
T COG1124 146 QRQRIAIARAL-IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL 193 (252)
T ss_pred HHHHHHHHHHh-ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999 9999999999 889999999999999987655
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-27 Score=224.09 Aligned_cols=162 Identities=22% Similarity=0.254 Sum_probs=124.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR----- 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~----- 208 (391)
+.+++++++|++..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+.|..
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll------------~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL------------KPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCcceEEEccccccccc
Confidence 45689999999768999999999 89999999999999999999999999 9999999988753
Q ss_pred ----ccccccccC---CCcceeeeEEEEec-cCCCcccCCc-----ccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 209 ----VGEVSTKSG---RGKHTTRHVSLLPL-SGGGYLADTP-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 209 ----v~~v~~~~~---~~~~ttr~i~~v~~-~~~~~l~Dtp-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
+++++|+.. .+|-+-..+..+.. ...+ +...+ ......|..+++.++.++.-. +|||||+||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g-~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~---~LSGGQ~QRV 148 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDLRDRQIG---ELSGGQKQRV 148 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCccccc-ccccccHHHHHHHHHHHHHcCchhhhCCccc---ccCcHHHHHH
Confidence 555555321 11111111111110 0011 11111 234566888999999998777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.||||| +.+|+++|+| |+.....++++|.+++++..+
T Consensus 149 ~lARAL-~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 149 LLARAL-AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred HHHHHh-ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 999999 9999999999 899999999999999987433
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.7e-27 Score=218.71 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=136.4
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++++.| ++..+|++||+.| +||+++|+|||||||||||++|.|+. +|++|+|.++|.++...
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKL 71 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhcc
Confidence 3468899999 8889999999999 99999999999999999999999998 99999999999877665
Q ss_pred ccccCCCcceeeeEEEEeccCCCccc-------------CCccc--------------chHHHHhCChhHHhhhchhHHh
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGYLA-------------DTPGF--------------NQPSLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~l~-------------Dtpg~--------------~~~~l~~~~~~~l~~~~p~~~~ 265 (391)
..+. .+...++++|+||.++.... .++-+ ....|+.+++.+.+....+
T Consensus 72 ~~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~--- 146 (258)
T COG3638 72 KGKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS--- 146 (258)
T ss_pred chHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc---
Confidence 5431 12245789999998654211 11110 1123456677666666666
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh------hhhhhhcccccccc
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF------QLRTFGTKREGDVR 327 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~------~~~~~~~~~~~~~~ 327 (391)
.|||||+|||+||||| +.+|++++.| ||.....++++|++++++... +...++..+|.++.
T Consensus 147 ~LSGGQQQRVaIARaL-~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 147 TLSGGQQQRVAIARAL-VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred cCCcchhHHHHHHHHH-hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 9999999999999999 9999999999 899999999999999887654 23344455555444
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.8e-26 Score=220.24 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=115.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---cccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~~ 211 (391)
..+++.+.|+...++++|++.| .|+.++|+|||||||||||++|+|++ .|++|.|.++|. ++..
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe------------~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE------------TPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred eehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC------------CCCCceEEECCEeccchhc
Confidence 3456677788889999999999 89999999999999999999999999 999999999998 4433
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCccc-----------------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGF-----------------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~-----------------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
++. ..+++++++|++..+ +.|+-.| ....|..+.++.+.+.||. +||||
T Consensus 72 ~~~-------~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---QLSGG 141 (345)
T COG1118 72 LAV-------RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---QLSGG 141 (345)
T ss_pred cch-------hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---hcChH
Confidence 222 236677777764322 3333111 1233567788899999999 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||+++|||+ +-+|+++++| |..-...+...|.++.+
T Consensus 142 QrQRVALARAL-A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~ 185 (345)
T COG1118 142 QRQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185 (345)
T ss_pred HHHHHHHHHHh-hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999 33444444444444433
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=5.9e-26 Score=210.37 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=133.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++.++++|++..++++|+|.+ +|++++|+||||+||||||++|.|++ +|++|+|+++|.++...++
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCH
Confidence 4578999999999999999999 99999999999999999999999999 9999999999999888776
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCccc--------c--------hHHHHhCChhHH-hhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTPGF--------N--------QPSLLKVTKQSL-AQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~--------~--------~~~l~~~~~~~l-~~~~p~~~~~LSgGq~q 273 (391)
... . ...++++++||....+ +.||-++ . ...++.+++... ++.||. +|||||++
T Consensus 78 ~~~-~-~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps---ELSGGM~K 152 (263)
T COG1127 78 EEL-Y-EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS---ELSGGMRK 152 (263)
T ss_pred HHH-H-HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch---hhcchHHH
Confidence 421 1 1346788899874432 4455332 1 122445666555 889999 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|+++|||+ +.+|+++++| ||.....+.+++.+++.....
T Consensus 153 RvaLARAi-aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~ 197 (263)
T COG1127 153 RVALARAI-ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 (263)
T ss_pred HHHHHHHH-hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 99999999 9999999999 999999999999999987555
No 23
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.4e-26 Score=209.45 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=120.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+++.+.|++..+|++|++.| +++++||+|||||||||||++|..+...-. .-..+|+|.++|+++-.-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~-------~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP-------GARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc-------CceEEEEEEECCeeccCCC
Confidence 34578999999999999999999 899999999999999999999999871100 0223599999998874321
Q ss_pred cccCCCcceeeeEEEEeccCC---CcccCCc-------ccc--------hHHHHhCChh-HHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGG---GYLADTP-------GFN--------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~---~~l~Dtp-------g~~--------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr 274 (391)
... -..++.++++||..+ ..++|+- |.. +..|....+. +..++...-...||||||||
T Consensus 81 ~d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 81 VDV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 111 013466777777532 3344441 111 2222222221 12222222223799999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEFQLRTF 318 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~~~~~~ 318 (391)
++||||+ +.+|+++++| ||.....+-+++.+|+++......++
T Consensus 158 LcIARal-Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTH 206 (253)
T COG1117 158 LCIARAL-AVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206 (253)
T ss_pred HHHHHHH-hcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeC
Confidence 9999999 9999999999 89999999999999996544333333
No 24
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=3.9e-25 Score=197.12 Aligned_cols=152 Identities=18% Similarity=0.281 Sum_probs=117.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++.+.++|++..- .+++.+ .|++++|+||||||||||+|+|+|++ .|.+|.|+++|++++..++
T Consensus 4 L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~------------~P~~G~i~i~g~d~t~~~P- 68 (231)
T COG3840 4 LDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE------------TPASGEILINGVDHTASPP- 68 (231)
T ss_pred ccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhcc------------CCCCceEEEcCeecCcCCc-
Confidence 4567777776431 112233 79999999999999999999999999 9999999999988755443
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccC------Ccccc---------hHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LAD------TPGFN---------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~D------tpg~~---------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..|-++++||+++.+ +.. .|+.. +..+..+++..+.++.|. +||||||||++
T Consensus 69 ------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~---~LSGGqRQRvA 139 (231)
T COG3840 69 ------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---ELSGGQRQRVA 139 (231)
T ss_pred ------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc---ccCchHHHHHH
Confidence 233455556554433 111 24432 233457889999999999 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||+ +.+..++++| ||.-+..++.++.++..+.+.
T Consensus 140 LARcl-vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~ 181 (231)
T COG3840 140 LARCL-VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM 181 (231)
T ss_pred HHHHH-hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCC
Confidence 99999 8888899999 889999999999999887766
No 25
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.5e-24 Score=200.23 Aligned_cols=160 Identities=15% Similarity=0.277 Sum_probs=126.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++...|+..++|++|||++ +|++++|+|+|||||||||++|+|+. ++.+|+|.|+|.++...+.
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~------------~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV------------RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeeEEECCeecCCCCH
Confidence 4578999999999999999999 99999999999999999999999999 8999999999999988776
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---ccchH--HHHhCChhHHhhhchhHHh-------hcCcccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---GFNQP--SLLKVTKQSLAQTFPEIKE-------MLKANEPAKCSFN 278 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---g~~~~--~l~~~~~~~l~~~~p~~~~-------~LSgGq~qr~~ia 278 (391)
... ....++++|+....+ +.++- .+... .-..-.++.....||.+.+ .|||||||.++||
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 432 346788888763322 22221 01110 0111114556777887664 7999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
||| +.+|+++++| .|.-.+.+.+.+.+++++..
T Consensus 149 RAL-m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g 187 (237)
T COG0410 149 RAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187 (237)
T ss_pred HHH-hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC
Confidence 999 9999999999 67889999999999987643
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.8e-25 Score=219.73 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=125.1
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++| ++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~ 71 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE------------RITSGEIWIGGRVVNEL 71 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCC
Confidence 3467899999 7788999999999 89999999999999999999999999 99999999999877544
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
+. ..+.+++++|++..+ +.++- + .....+..+++.++.+++|. +|||||+|
T Consensus 72 ~~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~Q 141 (356)
T PRK11650 72 EP-------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---ELSGGQRQ 141 (356)
T ss_pred CH-------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHH
Confidence 32 125678888774332 11111 0 11233556788888899998 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 142 RvalARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 183 (356)
T PRK11650 142 RVAMGRAI-VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR 183 (356)
T ss_pred HHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999988765
No 27
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.5e-25 Score=198.71 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=127.7
Q ss_pred CCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc---
Q 016339 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v--- 209 (391)
..++++.+|.... +++++|+.| +|++++++||||||||||+|+++|+. +|..|+|.++|.++
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~------------~P~~G~i~l~~r~i~gP 72 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV------------TPSRGSIQLNGRRIEGP 72 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc------------CcccceEEECCEeccCC
Confidence 4567889998877 999999999 89999999999999999999999999 99999999999866
Q ss_pred ----cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 210 ----GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 210 ----~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+-++|..++.++.+ .|+++--+-.+.....-.......+..+++++..++++- +|||||+||+.||||+ .
T Consensus 73 gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~---qLSGGmrQRvGiARAL-a 148 (259)
T COG4525 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW---QLSGGMRQRVGIARAL-A 148 (259)
T ss_pred CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceE---eecchHHHHHHHHHHh-h
Confidence 33444444444433 233221111110000001122234556788888889998 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh--hhhhhhccccc
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF--QLRTFGTKREG 324 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~ 324 (391)
.+|+.+++| |.-..+.+.++|-++.+...+ .+.+++..+..
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl 197 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 999999999 667889999999999877665 23444444433
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.3e-25 Score=218.56 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=125.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE------------KPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCC
Confidence 34688999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++.++.+++|. .|||||+||
T Consensus 75 ~-------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~---~LSgGq~QR 144 (351)
T PRK11432 75 I-------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD---QISGGQQQR 144 (351)
T ss_pred H-------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 236688888775432 122211 11223456677788888998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 145 VaLARaL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 145 VALARAL-ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred HHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999988764
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=3.7e-24 Score=212.74 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=125.6
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|.. ..+|+++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~------------~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECC
Confidence 35788999952 36999999999 89999999999999999999999999 999999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+... .+...+.++++++.+..+ +.++ .+. ....+..+++.+..+.+|. +|||||
T Consensus 71 ~~~~~~--l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~---~LSgGq 145 (343)
T TIGR02314 71 TLSNSE--LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS---NLSGGQ 145 (343)
T ss_pred cCCHHH--HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 544321 011245788888875432 1111 111 1233556777778888898 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +.+|+++|+| |+.....++++|.+++++
T Consensus 146 kQRV~IARAL-~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 146 KQRVAIARAL-ASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred HHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 899999999999999865
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=1e-24 Score=217.65 Aligned_cols=153 Identities=14% Similarity=0.222 Sum_probs=125.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE------------RQTAGTIYQGGRDITRLP 72 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCC
Confidence 34578999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++..+++++|. +|||||+||
T Consensus 73 ~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~---~LSgGq~QR 142 (353)
T TIGR03265 73 P-------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG---QLSGGQQQR 142 (353)
T ss_pred H-------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh---hCCHHHHHH
Confidence 2 235678888775432 222111 11234556777888889998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++++| |+.....+.+.|.++..+
T Consensus 143 vaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 143 VALARAL-ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999998765
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.89 E-value=1.9e-24 Score=217.20 Aligned_cols=153 Identities=17% Similarity=0.254 Sum_probs=125.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++...+
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE------------TPDSGRIMLDGQDITHVP 82 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 45688999999888999999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++++++++++..+ +.++-. .....+..+++.++.+++|. +|||||+||
T Consensus 83 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---~LSgGq~QR 152 (375)
T PRK09452 83 A-------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---QLSGGQQQR 152 (375)
T ss_pred H-------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 2 235678888775432 222211 11223556678888899998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 153 VaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 153 VAIARAV-VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 888999999999998765
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=1.4e-24 Score=217.29 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC--CcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~--G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|++ +|++++|+|||||||||||++|+|+. +|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV------------KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCEEEEECCEECCC
Confidence 45688999999888999999999 89999999999999999999999999 9999 999999987753
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+. ..+.++++++++..+ +.++- + .....+..+++.++.+++|. +|||||+
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---~LSgGq~ 143 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---QLSGGMQ 143 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---hCCHHHH
Confidence 322 235677888775432 11111 0 11233556677788888898 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||||+ +.+|+++++| |+.....+.+.|.++.++
T Consensus 144 QRvaLARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 144 QRIAIARAI-AIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186 (362)
T ss_pred HHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998765
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5e-24 Score=200.98 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=126.9
Q ss_pred CeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cc
Q 016339 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (391)
Q Consensus 137 ~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~ 213 (391)
+++++++|.+. .+++++|+.+ +|+.++|+|+||||||||+++|+|+. .|++|.|.++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl------------~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL------------KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC------------cCCCCEEEECCeeccchhh
Confidence 47788999776 8999999999 79999999999999999999999999 9999999999987653 11
Q ss_pred cccCCCcceeeeEEEEeccCCCcccC-C-----------cc--------cchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLAD-T-----------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~D-t-----------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
. ....+.+++++|+....+.. | -+ .....+..+++.++.++.|. .|||||+|
T Consensus 74 ~-----~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---~LSGGqkq 145 (235)
T COG1122 74 L-----LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---NLSGGQKQ 145 (235)
T ss_pred H-----HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---ccCCccee
Confidence 1 11456788888874332211 1 11 12344567788888999999 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|++||.++ +.+|+++|+| |+..+..+++++.+++.+.
T Consensus 146 RvaIA~vL-a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 146 RVAIAGVL-AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred eHHhhHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999 9999999999 9999999999999998874
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.1e-24 Score=198.27 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=117.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE------------RPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcCcCch-
Confidence 578899998888999999999 89999999999999999999999999 9999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+||++
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrl~ 140 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH---ELSGGQQQRVA 140 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHHHHHHH
Confidence 124567777653211 11110 00 1122344555555666676 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 la~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 141 LARAL-AREPSLLLLDEPLSALDAKLREELREELKELQRE 179 (213)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998754
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.89 E-value=5e-24 Score=212.80 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=123.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 4 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE------------HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 3578899998888999999999 89999999999999999999999999 9999999999987754322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------c--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.++++++++..+ +.++- + .....+..+++.++.+++|. .|||||
T Consensus 72 -------~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGq 141 (353)
T PRK10851 72 -------RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA---QLSGGQ 141 (353)
T ss_pred -------HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 124677777764322 11110 0 11223556677778888888 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +.+|+++++| |+.....+.++|.++.++
T Consensus 142 ~QRvalArAL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 185 (353)
T PRK10851 142 KQRVALARAL-AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185 (353)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998765
No 36
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4e-24 Score=214.73 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=123.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~------------~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------DITSGDLFIGEKRMNDVP 71 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 34678999999888999999999 89999999999999999999999999 999999999998775432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++++...+ +.++- +. ....+..+++.++.++.|. .|||||+||
T Consensus 72 ~-------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~---~LSgGq~QR 141 (369)
T PRK11000 72 P-------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK---ALSGGQRQR 141 (369)
T ss_pred H-------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHH
Confidence 2 124678888764322 11111 11 1223455677777788888 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||||+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 vaLAraL-~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999 888999999999998764
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2e-23 Score=196.60 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=119.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL------------RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccChh
Confidence 578899998888999999999 99999999999999999999999999 99999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. .....+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||+
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv 145 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA---ELSGGMKKRV 145 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHH
Confidence 0 001234577777653221 1111 001 1112344555555666777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 146 ~ia~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 146 ALARAL-ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999 889999999999998764
No 38
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=4.4e-24 Score=209.38 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=120.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~------------~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT------------HPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEecccch
Confidence 34688999999889999999999 89999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. ..+.++++++....+ +.++ .+.. ...+..+++....+..+. .||+||+||
T Consensus 76 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 146 (306)
T PRK13537 76 RH------ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG---ELSGGMKRR 146 (306)
T ss_pred HH------HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchh---hCCHHHHHH
Confidence 11 345678887764322 1111 1111 122334555555566666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +++|+++++| |+.....+++++.+++++
T Consensus 147 l~la~aL-~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 147 LTLARAL-VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHHHH-hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998654
No 39
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=5.9e-24 Score=197.77 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=118.4
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD------------RPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc------------CCCceeEEECCEehhh
Confidence 5788899976 67999999999 89999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+.... .....+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 146 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS---ELSGGQQ 146 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh---hcCHHHH
Confidence 332100 000124567776653211 1111 010 1123445566666667777 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 189 (218)
T cd03255 147 QRVAIARAL-ANDPKIILADEPTGNLDSETGKEVMELLRELNKE 189 (218)
T ss_pred HHHHHHHHH-ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998653
No 40
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4.6e-24 Score=207.95 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=121.4
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+...+++++|+ ...+|++|||.+ +|+++||+||||||||||||+|+|+. .|++|+|.++|.++..-
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~------------~p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL------------KPTSGEILVLGYDVVKE 72 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEEcCEeCccC
Confidence 34578999999 699999999999 89999999999999999999999999 99999999999765332
Q ss_pred ccccCCCcceeeeEEEEeccCCCc--------------ccCCc-----ccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY--------------LADTP-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~--------------l~Dtp-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
+.. ..++++++++....+ +...+ ......+..+++....+.+.. .||+||||
T Consensus 73 ~~~------~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~lS~G~kq 143 (293)
T COG1131 73 PAK------VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR---TLSGGMKQ 143 (293)
T ss_pred HHH------HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchh---hcCHHHHH
Confidence 111 234566666653221 11111 122344556666654455555 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|+.||.++ +++|+++|+| ||.....++++|.++..+.
T Consensus 144 rl~ia~aL-~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 144 RLSIALAL-LHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred HHHHHHHH-hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999 9999999999999999876
No 41
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.4e-24 Score=198.53 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=114.9
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE------------RPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcc
Confidence 5788999987 67999999999 99999999999999999999999999 8999999999976532
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
. .+.++++++....+ +.++- + .....+..+++.+..+..+. .|||||+
T Consensus 71 ~----------~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~ 137 (220)
T cd03293 71 P----------GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH---QLSGGMR 137 (220)
T ss_pred c----------cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcc---cCCHHHH
Confidence 1 23455665542211 11110 0 11123345556556666676 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 138 qrl~la~al-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 138 QRVALARAL-AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred HHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 889999999999998654
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.4e-24 Score=198.06 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL------------KPTSGRATVAGHDVVREPR- 69 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecCcChH-
Confidence 578899998888999999999 89999999999999999999999999 9999999999876643111
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
...+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+||++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr~~ 141 (220)
T cd03265 70 -----EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK---TYSGGMRRRLE 141 (220)
T ss_pred -----HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh---hCCHHHHHHHH
Confidence 1224566766653211 11110 11 1123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 142 IARSL-VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998765
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.2e-24 Score=214.30 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=123.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE------------QPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 44688999998888999999999 89999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++-. .....+..+++.++.+++|. .|||||+||
T Consensus 88 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---~LSgGq~QR 157 (377)
T PRK11607 88 P-------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---QLSGGQRQR 157 (377)
T ss_pred H-------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 235678888775432 222211 11233456677788888998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||||+ +.+|+++++| |......+.+.+.++..+
T Consensus 158 VaLARAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 198 (377)
T PRK11607 158 VALARSL-AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198 (377)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999 788888888888887654
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=5.9e-24 Score=197.62 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE------------KPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEehhhcC
Confidence 5788999964 36999999999 99999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
... .....+.++++++....+ +.++- +. ....+..+++.+..+..|. .|||||+||
T Consensus 72 ~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qr 146 (216)
T TIGR00960 72 GRE--IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM---QLSGGEQQR 146 (216)
T ss_pred hhH--HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHH
Confidence 210 000224567777663211 11110 11 1123445666666677777 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.++++.
T Consensus 147 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 147 VAIARAI-VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 889999999999988643
No 45
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=1.1e-23 Score=195.35 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~v~~~g~~~~~~~~- 69 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE------------EPTSGRIYIGGRDVTDLPP- 69 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCc-
Confidence 578899998888999999999 99999999999999999999999999 8999999999987643322
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ .++. ...+..+++....+..+. .|||||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr~~ 140 (213)
T cd03301 70 ------KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK---QLSGGQRQRVA 140 (213)
T ss_pred ------ccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh---hCCHHHHHHHH
Confidence 124577777653211 1111 0111 122344556666667776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++++| |+.....+.+++.++..+
T Consensus 141 laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 141 LGRAI-VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998764
No 46
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.88 E-value=6.5e-24 Score=210.92 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=120.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||++ +|++++|+|||||||||||++|+|+. +|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~------------~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT------------SPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCceEEEECCEECCcch
Confidence 44688999999989999999999 89999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ +.++ .+. ....+..+++.+..+..+. .|||||+||
T Consensus 110 ~------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---~LS~G~kqr 180 (340)
T PRK13536 110 R------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS---DLSGGMKRR 180 (340)
T ss_pred H------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChh---hCCHHHHHH
Confidence 1 1345677777763321 1111 011 0122334455555666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +++|+++|+| |+.....++++|.++...
T Consensus 181 v~lA~aL-~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 181 LTLARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998754
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.4e-23 Score=198.17 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=118.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE------------RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCc
Confidence 4578999998888999999999 99999999999999999999999999 8999999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c------------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G------------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.++++++.... .+.++- + .....+..+++..+.+..+. .|||||
T Consensus 72 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 141 (239)
T cd03296 72 -------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA---QLSGGQ 141 (239)
T ss_pred -------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHH
Confidence 12346666665221 111110 0 01122445566666667777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 ~qrl~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (239)
T cd03296 142 RQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE 185 (239)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999 889999999999998764
No 48
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=3e-23 Score=192.01 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=116.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 69 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDGKDLTKLS 69 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEcccCC
Confidence 4678889987 77999999999 89999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.++++++.... .+.++ .++. ...+..+++....+..+. .|||||+|
T Consensus 70 ~~-----~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~q 141 (211)
T cd03225 70 LK-----ELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF---TLSGGQKQ 141 (211)
T ss_pred HH-----HHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc---cCCHHHHH
Confidence 11 123456677665311 11111 0111 112344566556666676 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 142 rv~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 142 RVAIAGVL-AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183 (211)
T ss_pred HHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999 889999999999988654
No 49
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=3.5e-23 Score=191.06 Aligned_cols=150 Identities=15% Similarity=0.209 Sum_probs=117.2
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++++++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. .
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~--~ 67 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI------------KESSGSILLNGKPIKA--K 67 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEhhh--H
Confidence 4678889987 78999999999 99999999999999999999999999 9999999999976532 0
Q ss_pred ccCCCcceeeeEEEEeccCC-----CcccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG-----GYLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
...+.++++++... ..+.++- + .....+..+++.+..+..|. .|||||+||++||
T Consensus 68 ------~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la 138 (205)
T cd03226 68 ------ERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---SLSGGQKQRLAIA 138 (205)
T ss_pred ------HhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---hCCHHHHHHHHHH
Confidence 02234666666521 1111110 0 11233556666667777787 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 139 ral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (205)
T cd03226 139 AAL-LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175 (205)
T ss_pred HHH-HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 999 9999999999 889999999999988643
No 50
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=6e-24 Score=186.34 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=127.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc--cc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--GE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v--~~ 211 (391)
+.++.+.++||..++|-||+++. +|++++++||||+||||||+.|.-+. .|.+|+..+.+... +.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle------------~p~sg~l~ia~~~fd~s~ 70 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSK 70 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh------------CCCCCeEEeccccccccc
Confidence 34578899999999999999999 89999999999999999999999988 89999988876543 22
Q ss_pred cccccCCCcceeeeEEEEeccCCCc--------ccCCc----ccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY--------LADTP----GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~--------l~Dtp----g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ......+++++++++.++.+ +++.| |.. .+.+..+.+..++++||- .|||||
T Consensus 71 ~~~~-k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---hlsggq 146 (242)
T COG4161 71 TPSD-KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---HLSGGQ 146 (242)
T ss_pred CccH-HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce---ecccch
Confidence 2111 12233557788888877654 22223 221 233456677888999999 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||++||||+ +.+|.++++| ||+...++.++++|+....
T Consensus 147 qqrvaiaral-mmkpqvllfdeptaaldpeitaqvv~iikel~~tg 191 (242)
T COG4161 147 QQRVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191 (242)
T ss_pred hhhHHHHHHH-hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999 8999999999999987543
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.88 E-value=1.2e-23 Score=195.78 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=117.7
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEEccc
Confidence 57889999876 7999999999 89999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+. ...+.++++++....+ +.++. +. ....+..+++.+..+..+. .|||||+
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 142 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG---GFSTGMR 142 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh---hcCHHHH
Confidence 111 1234567777653211 11110 00 1123445566666666666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 143 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 143 QKVAIARAL-VHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 999999999 9999999999 889999999999998643
No 52
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=2.5e-23 Score=183.93 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
+.-.+|++|++.+ +|+.++|||||||||||||-.|+|+. .|++|+|.+.|++...+.++ ++.....
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd------------~~ssGeV~l~G~~L~~ldEd-~rA~~R~ 87 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD------------DPSSGEVRLLGQPLHKLDED-ARAALRA 87 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC------------CCCCceEEEcCcchhhcCHH-HHHHhhc
Confidence 3446899999999 89999999999999999999999999 99999999999998877764 3333445
Q ss_pred eeEEEEeccCCCccc----CC---c----c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 224 RHVSLLPLSGGGYLA----DT---P----G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 224 r~i~~v~~~~~~~l~----Dt---p----g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++++++||.|..... ++ | | .....+..+++.+-+..||. +|||||||||+||||+ ..
T Consensus 88 ~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~---qLSGGEQQRVAiARAf-a~ 163 (228)
T COG4181 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA---QLSGGEQQRVALARAF-AG 163 (228)
T ss_pred cceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc---ccCchHHHHHHHHHHh-cC
Confidence 889999998653210 00 1 1 12234667788888888999 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|++++.| |...-+.+.+++-.++.+...
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~ 198 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCc
Confidence 99999999 678889999999998876555
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.88 E-value=1.1e-23 Score=196.10 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=116.3
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL------------RPTSGTAYINGYSIRTDR 70 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccch
Confidence 4678889976 67999999999 89999999999999999999999999 999999999997764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
....+.++++++....+ +.++- +. ....+..+++.+..+..+. .||+||+||
T Consensus 71 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 141 (220)
T cd03263 71 ------KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR---TLSGGMKRK 141 (220)
T ss_pred ------HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhh---hCCHHHHHH
Confidence 11234567777653211 11110 11 1122334555556666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 142 v~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 142 LSLAIAL-IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred HHHHHHH-hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 88999999999998865
No 54
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=7e-23 Score=192.29 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=117.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccCCHh
Confidence 578899998888999999999 99999999999999999999999999 99999999999876443221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. ....++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 143 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS---SLSGGERRRVE 143 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHHH
Confidence 10 113466666653211 1111 010 1122334555555666666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++...
T Consensus 144 la~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 144 IARAL-ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred HHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99999 9999999999 889999999999998653
No 55
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=3.8e-23 Score=206.82 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=120.0
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... ....
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~------------~p~~G~I~i~G~~i~~~~~~~-~~~~ 68 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI------------EPTAGQIFIDGENIMKQSPVE-LREV 68 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------CCCceEEEECCEECCcCCHHH-HHHH
Confidence 467778999999999 99999999999999999999999999 999999999998876543321 0000
Q ss_pred eeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 222 TTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 222 ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
..++++++++....+ +.++- ++ ....+..+++..+.+.+|. .|||||+||++||||+
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---~LSGGq~QRV~lARAL- 144 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---ELSGGMQQRVGLARAL- 144 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 145788888875432 11211 11 1233556677778888898 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++|+| |+.....+++++.++...
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999998764
No 56
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=8.7e-24 Score=188.21 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=134.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+.+.+.|+...+|++||+.- +|.++.|+|.|||||||+|++|.-+. .|+.|.|+++|..+....
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE------------~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc------------CCCCceEEECCeEEEeee
Confidence 34566778999999999999999 89999999999999999999999999 999999999999886655
Q ss_pred cccCCCcc--------eeeeEEEEeccCCCc--------ccCCcc------------cchHHHHhCChhHHhhhchhHHh
Q 016339 214 TKSGRGKH--------TTRHVSLLPLSGGGY--------LADTPG------------FNQPSLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 214 ~~~~~~~~--------ttr~i~~v~~~~~~~--------l~Dtpg------------~~~~~l~~~~~~~l~~~~p~~~~ 265 (391)
...|.... .+..++++||.++.+ +++.|- ..+..+..+++.+-.+.||.
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--- 151 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--- 151 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc---
Confidence 54442211 234578888887765 222231 12334667888888889999
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||+||++||||| +.+|.++++| ||+-..++++.+.+|.++.++
T Consensus 152 ~LSGGQQQR~aIARaL-ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 152 HLSGGQQQRVAIARAL-AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred ccCchHHHHHHHHHHH-hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 9999999999999999 9999999999 899999999999999887665
No 57
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=1.5e-23 Score=193.30 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=117.2
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
+++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.......
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE------------KFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccchhh
Confidence 57888998888999999999 99999999999999999999999999 999999999998764332210
Q ss_pred CCCcceeeeEEEEeccCCC----cccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGG----YLADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....+.++++++.... .+.++- + .....+..+++.+..+..+. .||+||+||++|
T Consensus 70 ~-~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qr~~l 145 (206)
T TIGR03608 70 A-SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIY---ELSGGEQQRVAL 145 (206)
T ss_pred H-HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChh---hCCHHHHHHHHH
Confidence 0 00123456776665321 111110 0 01122444566666666666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 183 (206)
T TIGR03608 146 ARAI-LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183 (206)
T ss_pred HHHH-HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc
Confidence 9999 9999999999 889999999999987643
No 58
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.88 E-value=8.4e-23 Score=188.77 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=117.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++... .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~-~- 68 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI------------KPDSGEITFDGKSYQKN-I- 68 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCCcccch-H-
Confidence 478889998888999999999 99999999999999999999999999 89999999999866432 1
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------cc----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PG----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.+++++++...+ +.++ .+ .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 140 (208)
T cd03268 69 -----EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK---GFSLGMKQRLGIALA 140 (208)
T ss_pred -----HHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh---hCCHHHHHHHHHHHH
Confidence 1234566776653211 1111 01 11223445566666667676 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 141 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 141 L-LGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred H-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 9999999999 88899999999998875
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=7e-23 Score=193.20 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=117.5
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDGTDINKLKG 70 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEeccccCH
Confidence 5788999987 78999999999 99999999999999999999999999 8999999999987654331
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---------------c--------cchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---------------G--------FNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------------g--------~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ....+.++++++....+ +.++- + .....+..+++....+..+. .|
T Consensus 71 ~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 145 (241)
T cd03256 71 KAL--RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD---QL 145 (241)
T ss_pred hHH--HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc---cC
Confidence 000 00123466666553211 11110 0 01122344556556666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 146 S~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (241)
T cd03256 146 SGGQQQRVAIARAL-MQQPKLILADEPVASLDPASSRQVMDLLKRINRE 193 (241)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 889999999999998754
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=1.5e-23 Score=194.41 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=117.6
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++| ++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL------------TPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcccCCH
Confidence 57888999 4668999999999 89999999999999999999999999 8999999999987754322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. .....+.++++++....+ +.++- ++ ....+..+++.+..+..|. .|||||+||+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl 146 (214)
T TIGR02673 72 RQ--LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE---QLSGGEQQRV 146 (214)
T ss_pred HH--HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHH
Confidence 10 001234577777653211 11110 11 1122334555555566666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T TIGR02673 147 AIARAI-VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186 (214)
T ss_pred HHHHHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999998653
No 61
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.3e-23 Score=199.08 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=115.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~-- 69 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV------------PYQHGSITLDGKPVEGPG-- 69 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCC--
Confidence 578899998888999999999 89999999999999999999999999 999999999997763211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..++++++....+ +.++ .+. ....+..+++....+..|. .|||||+||++
T Consensus 70 --------~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qrl~ 138 (255)
T PRK11248 70 --------AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIW---QLSGGQRQRVG 138 (255)
T ss_pred --------CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHHHHH
Confidence 1245555542211 1111 011 1223445566666667777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 139 laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 139 IARAL-AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998543
No 62
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.8e-23 Score=193.53 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=114.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~---~ 67 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII------------LPDSGEVLFDGKPLDI---A 67 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCCchhH---H
Confidence 467888998888999999999 99999999999999999999999999 8999999999976532 0
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++- + .....+..+++....+..+. .|||||+||++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 138 (210)
T cd03269 68 ------ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE---ELSKGNQQKVQ 138 (210)
T ss_pred ------HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHh---hCCHHHHHHHH
Confidence 123456666553211 11110 0 01122334555555666666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 139 la~al-~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 139 FIAAV-IHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999 9999999999 888999999999987643
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=3.9e-23 Score=209.23 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=122.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|+++|.++...+.
T Consensus 5 ~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll------------~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL------------TPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred EEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEEcCcCCH
Confidence 4578999999999999999999 99999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------c-------------ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------P-------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------p-------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++....+ +.++ | ......+..+++.++.++.+. .|||||
T Consensus 73 ~~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~---~LSgGe 144 (402)
T PRK09536 73 RA-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT---SLSGGE 144 (402)
T ss_pred HH-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh---hCCHHH
Confidence 11 234567776653221 1110 0 011234556677777777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||||+ +++|+++|+| |+.....++++|.++.++
T Consensus 145 rQRv~IArAL-~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~ 188 (402)
T PRK09536 145 RQRVLLARAL-AQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188 (402)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999999753
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-23 Score=196.11 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=118.6
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE------------RPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 57888999766 7999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+... .....+.++++++....+ +.++- ++ ....+..+++.+..+..+. .|||||+
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 146 (233)
T cd03258 72 LSGKE--LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA---QLSGGQK 146 (233)
T ss_pred CCHHH--HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChh---hCCHHHH
Confidence 32110 000134567777663221 11110 11 1122344566666666666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 189 (233)
T cd03258 147 QRVGIARAL-ANNPKVLLCDEATSALDPETTQSILALLRDINRE 189 (233)
T ss_pred HHHHHHHHH-hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 889999999999998765
No 65
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=8.9e-23 Score=199.75 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=119.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++.....
T Consensus 6 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 6 DLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI------------SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcccHH
Confidence 4578999999888999999999 89999999999999999999999999 9999999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
...+.++++++....+ +.++ .+.. ...+..+++....+..+. .|||||+||+
T Consensus 74 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~---~LSgG~~qrv 144 (303)
T TIGR01288 74 ------LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA---LLSGGMKRRL 144 (303)
T ss_pred ------HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchh---hCCHHHHHHH
Confidence 1235577777763221 1111 0111 112334555555666666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 145 ~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 184 (303)
T TIGR01288 145 TLARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184 (303)
T ss_pred HHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 899999999999998653
No 66
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.88 E-value=1.8e-23 Score=193.76 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=117.6
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE------------LPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcccCCH
Confidence 4788899964 57999999999 99999999999999999999999999 9999999999987654321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
... ....+.++++++....+ +.++- +. ....+..+++....+..|. .|||||+||+
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv 145 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA---ELSGGEQQRV 145 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh---hcCHHHHHHH
Confidence 100 01234577777663221 11110 00 1122344566666666777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 ~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 146 AIARAI-VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999988643
No 67
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=4.5e-23 Score=191.28 Aligned_cols=147 Identities=21% Similarity=0.275 Sum_probs=112.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~---- 65 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL------------KPTSGSIRVFGKPLEK---- 65 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCccHHH----
Confidence 467888998878999999999 99999999999999999999999999 9999999999875421
Q ss_pred cCCCcceeeeEEEEeccCCC------cccCC-------------------cccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG------YLADT-------------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~------~l~Dt-------------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
..+.+++++++... .+.++ .......+..+++....+..+. .||||
T Consensus 66 ------~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG 136 (213)
T cd03235 66 ------ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG---ELSGG 136 (213)
T ss_pred ------HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc---cCCHH
Confidence 11223444433110 00000 0111223445566666677777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 137 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 137 QQQRVLLARAL-VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88999999999999865
No 68
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=4.1e-23 Score=187.16 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=114.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++......
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL------------KPSSGEILLDGKDLASLSPK 69 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCcCCHH
Confidence 467888998878999999999 99999999999999999999999999 99999999999876533221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....++++++ .+..+++.+..+..+. .||+||+||++||+|+ +.+|+++|+|
T Consensus 70 ~-----~~~~i~~~~q---------------~l~~~gl~~~~~~~~~---~LS~G~~qrl~laral-~~~p~llllDEP~ 125 (180)
T cd03214 70 E-----LARKIAYVPQ---------------ALELLGLAHLADRPFN---ELSGGERQRVLLARAL-AQEPPILLLDEPT 125 (180)
T ss_pred H-----HHHHHhHHHH---------------HHHHcCCHhHhcCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 0 1223444443 4556677766677777 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.+++.+
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARE 146 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999998664
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=5.7e-23 Score=194.18 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=116.7
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV------------EPSSGSILLEGTDITKLRG 71 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCccEEEECCEEhhhCCH
Confidence 578889997 678999999999 99999999999999999999999999 9999999999977654321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------------------c----cchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------------------G----FNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------------------g----~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ....+.++++++....+ +.++- . .....+..+++....+..+. .|
T Consensus 72 ~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 146 (243)
T TIGR02315 72 KKL--RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD---QL 146 (243)
T ss_pred HHH--HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc---cC
Confidence 100 00123456666542211 11110 0 01122344556556666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 SgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (243)
T TIGR02315 147 SGGQQQRVAIARAL-AQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194 (243)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999 889999999999998654
No 70
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=3.7e-23 Score=198.06 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=121.2
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
.+...+++++||++ +|++++|+|-||||||||+++|.++. +|++|+|+++|.++..++... +....
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi------------ept~G~ilv~g~di~~~~~~~-Lr~~R 104 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI------------EPTRGEILVDGKDIAKLSAAE-LRELR 104 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC------------CCCCceEEECCcchhcCCHHH-HHHHH
Confidence 34456889999999 89999999999999999999999999 999999999999887666532 11222
Q ss_pred eeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 223 TRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 223 tr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
++.++++||.|+.+ +.++.+ .....+..+++....++||. +|||||||||.+|||+ +
T Consensus 105 r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~---eLSGGMqQRVGLARAl-a 180 (386)
T COG4175 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---ELSGGMQQRVGLARAL-A 180 (386)
T ss_pred hhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc---cccchHHHHHHHHHHH-c
Confidence 35677777776554 223221 12345778899999999999 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.+|+++++| ||--...+++-|.++....++
T Consensus 181 ~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K 216 (386)
T COG4175 181 NDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216 (386)
T ss_pred cCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC
Confidence 999999999 776667777767676655555
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=2.6e-23 Score=195.75 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=116.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEECCCCCHH
Confidence 578889998878999999999 89999999999999999999999999 89999999999876433221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------cc-----------------cchHHHHhCChhHHhhhchhHHhh
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PG-----------------FNQPSLLKVTKQSLAQTFPEIKEM 266 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg-----------------~~~~~l~~~~~~~l~~~~p~~~~~ 266 (391)
. .....++++++....+ +.++ .. .....+..+++....+..+. .
T Consensus 71 ~----~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 143 (236)
T cd03219 71 E----IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---E 143 (236)
T ss_pred H----HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh---h
Confidence 0 0113466666653211 1111 00 01122334555555566666 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 144 LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (236)
T cd03219 144 LSYGQQRRLEIARAL-ATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 (236)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999 88999999999999865
No 72
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=1.6e-22 Score=186.45 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=117.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS------------PPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccccH-
Confidence 478899998888999999999 99999999999999999999999999 9999999999877642211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-----c----ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-----P----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-----p----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
...+.++++++....+ +.++ + ......+..+++..+.+..+. .|||||+||++||+++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~laral- 140 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVA---QLSAGQQRRVALARLL- 140 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchh---hCCHHHHHHHHHHHHH-
Confidence 1234566666543211 1111 0 011223445666666666676 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++|+| |+.....+.++|.++..+
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 889999999999887643
No 73
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=2e-23 Score=204.26 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=113.1
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
+|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+. .
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~------~ 63 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL------------RPTSGTARVAGYDVVREPR------K 63 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCHH------H
Confidence 567778999999999 99999999999999999999999999 9999999999977643111 1
Q ss_pred eeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 222 TTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 222 ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
..+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++||+|+
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la~al- 139 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG---TYSGGMRRRLDIAASL- 139 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchh---hCCHHHHHHHHHHHHH-
Confidence 234466766653221 1111 011 1223455666666677777 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++|+++|+| |+.....+.+++.+++++
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 899999999999998754
No 74
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.87 E-value=2.9e-23 Score=193.50 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=117.5
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD------------NPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhh
Confidence 4678889964 46999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCcc-------c--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTPG-------F--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg-------~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+.... .....+.++++++....+ +.++-. . ....+..+++....+..+. .|||||+
T Consensus 72 ~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~ 147 (221)
T TIGR02211 72 LSSNER-AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS---ELSGGER 147 (221)
T ss_pred cCHhHH-HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHH
Confidence 432110 000114577777763211 111110 0 1122344555556666676 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (221)
T TIGR02211 148 QRVAIARAL-VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190 (221)
T ss_pred HHHHHHHHH-hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999988654
No 75
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=1.2e-22 Score=191.43 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=117.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY------------VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcccCChh
Confidence 478889998888999999999 99999999999999999999999999 99999999999776433221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ .+. ....+..+++....+..+. .|||||+||++
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~ 142 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVR---ELNGGHRRRVE 142 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHH
Confidence 123567777653221 1111 011 0112334555555566666 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 143 laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 181 (236)
T TIGR03864 143 IARAL-LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD 181 (236)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998653
No 76
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.3e-22 Score=187.31 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=116.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++......
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA------------RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEcccchHH
Confidence 578889998888999999999 99999999999999999999999999 99999999999876432211
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCC------------cccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADT------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dt------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
..++++++++.... .+.++ .......+..+++.+..+..+. .|||||+||++||+
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~la~ 142 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVR---QLSAGQQRRVALAR 142 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChh---hcCHHHHHHHHHHH
Confidence 22345555544211 11111 0011223455666666677777 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 143 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 143 LW-LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred HH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 9999999999 88999999999998764
No 77
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.87 E-value=8.5e-23 Score=209.93 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=122.9
Q ss_pred CeeEEEEcCC-----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 137 ~~~v~~s~~~-----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
++++.+.|.. ..++++|||.+ +|++++|||+||||||||.++|+|+. +|++|.|.|
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~------------~P~~G~i~~ 350 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL------------PPSSGSIIF 350 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEE
Confidence 4557777763 36899999999 99999999999999999999999999 999999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCc------ccCC--------cc--------cchHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY------LADT--------PG--------FNQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~------l~Dt--------pg--------~~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++ .+. .+..+...+.++++||+.-.. +.+. .. .....+..+++. .++++||
T Consensus 351 ~g~~~-~~~--~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 351 DGQDL-DLT--GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred eCccc-ccc--cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99882 222 122223456788999872211 1100 11 111224455554 4789999
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
. +|||||+||++||||| +.+|+++|+| |+.....++++|.+++++...
T Consensus 428 ~---elSGGQrQRvaIARAL-a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 428 H---ELSGGQRQRVAIARAL-ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred h---hcCcchhHHHHHHHHH-hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 9 9999999999999999 9999999999 899999999999999988665
No 78
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.3e-23 Score=207.32 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=121.5
Q ss_pred CeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE------------RPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCc
Confidence 578899997 357999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.+... .+...+.++++++....+ +.++ .+. ....+..+++....+.+|. .|||||+
T Consensus 72 ~~~~~--~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~ 146 (343)
T PRK11153 72 LSEKE--LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA---QLSGGQK 146 (343)
T ss_pred CCHHH--HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHH
Confidence 43211 011235678888764321 1111 011 1123445566666777777 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 147 qRv~lAraL-~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 147 QRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 889999999999998764
No 79
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.87 E-value=4.9e-23 Score=190.75 Aligned_cols=156 Identities=18% Similarity=0.244 Sum_probs=118.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 69 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE------------EPDSGTIIIDGLKLTDDKK 69 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccch
Confidence 3578899998888999999999 99999999999999999999999999 9999999999986632100
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. .....+.++++++....+ +.++. ++ ....+..+++....+..+. .|||||+||
T Consensus 70 ~---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 143 (213)
T cd03262 70 N---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA---QLSGGQQQR 143 (213)
T ss_pred h---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc---ccCHHHHHH
Confidence 0 011235577777653211 11110 11 1122344566666677777 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++++.
T Consensus 144 v~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 184 (213)
T cd03262 144 VAIARAL-AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184 (213)
T ss_pred HHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999 889999999999998753
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.87 E-value=1.2e-22 Score=189.36 Aligned_cols=153 Identities=13% Similarity=0.186 Sum_probs=113.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCCCCHH
Confidence 578889998888999999999 99999999999999999999999999 99999999999776443221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc----c--c-------hHHHHhC-ChhHHhhhchhHHhhcCccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG----F--N-------QPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg----~--~-------~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ...+.++++++....+ +.++-. . . ...+..+ .+....+..+. .|||||+||++|
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrv~l 143 (222)
T cd03224 71 E----RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAG---TLSGGEQQMLAI 143 (222)
T ss_pred H----HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchh---hCCHHHHHHHHH
Confidence 1 0124567777653221 111100 0 0 0111222 12333444454 899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 144 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 144 ARAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180 (222)
T ss_pred HHHH-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999 88999999999998865
No 81
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=6.5e-23 Score=194.08 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=108.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++|||.+ +|++++|||+||||||||-++|+|++ +|++|+|+|+|+++..++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~------------~pt~G~i~f~g~~i~~~~~----------- 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE------------EPTSGEILFEGKDITKLSK----------- 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc------------CCCCceEEEcCcchhhcch-----------
Confidence 37899999999 99999999999999999999999999 9999999999988654430
Q ss_pred EEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
..........+..+++. +.+.+||+ +|||||+||+.||||+ +.+|+++|.| |.....
T Consensus 83 ------------~~~~~~v~elL~~Vgl~~~~~~ryPh---elSGGQrQRi~IARAL-al~P~liV~DEpvSaLDvSiqa 146 (268)
T COG4608 83 ------------EERRERVLELLEKVGLPEEFLYRYPH---ELSGGQRQRIGIARAL-ALNPKLIVADEPVSALDVSVQA 146 (268)
T ss_pred ------------hHHHHHHHHHHHHhCCCHHHhhcCCc---ccCchhhhhHHHHHHH-hhCCcEEEecCchhhcchhHHH
Confidence 00011233455666653 57899999 9999999999999999 9999999999 778999
Q ss_pred HHHHHHHHHHHHHhh
Q 016339 299 YYFQLLDEIRIREEF 313 (391)
Q Consensus 299 ~~~~ll~el~~~~~~ 313 (391)
+++++|.+++++...
T Consensus 147 qIlnLL~dlq~~~~l 161 (268)
T COG4608 147 QILNLLKDLQEELGL 161 (268)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999987665
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=2.2e-23 Score=203.83 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=119.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~------------~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 4 RVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL------------PPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccChH
Confidence 4678999999889999999999 89999999999999999999999999 9999999999977643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
...+.++++++....+ +.++ .+. ....+..+++....++.+. .|||||+||+
T Consensus 72 ------~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrv 142 (301)
T TIGR03522 72 ------EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG---QLSKGYRQRV 142 (301)
T ss_pred ------HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchh---hCCHHHHHHH
Confidence 1234567777653221 1111 111 1223445566666677666 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+|+ +++|+++|+| |+.....+++++.+++.
T Consensus 143 ~la~al-~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~ 181 (301)
T TIGR03522 143 GLAQAL-IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999 9999999999 89999999999999864
No 83
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.6e-23 Score=191.65 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=116.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +| +++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~- 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT------------PPSSGTIRIDGQDVLKQPQ- 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCCccccchH-
Confidence 578889998888999999999 88 99999999999999999999999 9999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
...+.+++++++...+ +.++- + .....+..+++....+..+. .|||||+||++
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 140 (211)
T cd03264 69 -----KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG---SLSGGMRRRVG 140 (211)
T ss_pred -----HHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh---hCCHHHHHHHH
Confidence 1234566766653211 11110 0 01123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 141 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (211)
T cd03264 141 IAQAL-VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999 9999999999 88999999999998864
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3e-23 Score=195.23 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=118.4
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 7 ~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 7 QCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcC
Confidence 45788889964 46899999999 89999999999999999999999999 999999999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCC----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.... .....+.+++++++... .+.++. +. ....+..+++.++.+..+. .|||||
T Consensus 75 ~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgG~ 150 (233)
T PRK11629 75 KLSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS---ELSGGE 150 (233)
T ss_pred cCCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 4432100 00011457777776321 111110 10 1122344566556666676 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.+++..
T Consensus 151 ~qrl~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (233)
T PRK11629 151 RQRVAIARAL-VNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194 (233)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
No 85
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=1.8e-22 Score=185.37 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=116.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL------------RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccchHH
Confidence 467889998888999999999 99999999999999999999999999 89999999999876443211
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 141 (198)
T TIGR01189 71 ------PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA---QLSAGQQRRLALARL 141 (198)
T ss_pred ------hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChh---hcCHHHHHHHHHHHH
Confidence 22456666654221 111110 0 11223445566666667777 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 142 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 142 W-LSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9 9999999999 88899999999988754
No 86
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.3e-23 Score=197.25 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=120.3
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|. ...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 6 ~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 6 EVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY------------LPQRGRVKVMGREVNAEN 73 (274)
T ss_pred EEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEECCCCC
Confidence 4678999995 567999999999 99999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.+++++++... .+.++- +. ....+..+++.+..+.+|. .|||||+|
T Consensus 74 ~~-----~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgG~~q 145 (274)
T PRK13647 74 EK-----WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---HLSYGQKK 145 (274)
T ss_pred HH-----HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---hCCHHHHH
Confidence 11 123457777775311 111110 11 1223445677777788888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 146 rv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 146 RVAIAGVL-AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999 889999999999998754
No 87
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=6.2e-23 Score=214.92 Aligned_cols=155 Identities=20% Similarity=0.269 Sum_probs=122.5
Q ss_pred hcCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++.+++++++|.+ ..+|+++|+++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~------------~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL------------DPLQGEVTLDGVSVSS 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 3567999999965 46899999999 99999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchhH--------HhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~~--------~~~LSgGq 271 (391)
+ ... .++++++++|+. .+.+.++ |...+ ..+...++.+....+|+- ...|||||
T Consensus 402 ~-~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 402 L-QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred H-HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 6 432 567789999883 3334333 22222 234455665555555431 23699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++
T Consensus 476 rQRiaiARal-l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 476 RQRLALARAL-LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 788888888877764
No 88
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.87 E-value=9e-23 Score=195.37 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=117.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+..
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~-- 78 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE------------TPSAGELLAGTAPLAE-- 78 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEHHH--
Confidence 45689999998888999999999 89999999999999999999999999 9999999998865421
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc---------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP---------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++....+ +.++. ......+..+++....+..+. .|||||+||++||+|
T Consensus 79 --------~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGqkqrl~lara 147 (257)
T PRK11247 79 --------AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPA---ALSGGQKQRVALARA 147 (257)
T ss_pred --------hhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 123355555542211 11110 111223455666666777777 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 L-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 148 L-IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred H-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999 889999999999998654
No 89
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.8e-22 Score=185.83 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=115.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 3 DVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL------------NPEKGEILFERQSIKKDLC 70 (200)
T ss_pred EEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeeEEECCCccccCHH
Confidence 3578899998888999999999 99999999999999999999999999 9999999999987643111
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCcc----------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPG----------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg----------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.++++++.... .+.++-. .....+..+++....+..+. .||+||+||++||+|
T Consensus 71 ------~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rv~lara 141 (200)
T PRK13540 71 ------TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCG---LLSSGQKRQVALLRL 141 (200)
T ss_pred ------HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChh---hcCHHHHHHHHHHHH
Confidence 123456676654221 1111110 01222334444444555555 899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+ +.+|+++|+| |+.....+.++|.++++
T Consensus 142 l-~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 142 W-MSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred H-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 9 9999999999 88999999999998754
No 90
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1.9e-22 Score=189.22 Aligned_cols=154 Identities=11% Similarity=0.133 Sum_probs=115.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL------------PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 578899998888999999999 99999999999999999999999999 99999999999876543321
Q ss_pred cCCCcceeeeEEEEeccCCCcc----cCCc-------cc-----chHHHHhCC-hhHHhhhchhHHhhcCcccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYL----ADTP-------GF-----NQPSLLKVT-KQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l----~Dtp-------g~-----~~~~l~~~~-~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
. ...+.++++++....+. .++- +. ....+..++ +....+..+. .|||||+||++||
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrv~la 143 (230)
T TIGR03410 71 E----RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGG---DLSGGQQQQLAIA 143 (230)
T ss_pred H----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChh---hCCHHHHHHHHHH
Confidence 1 01245777776633211 1110 00 011122222 2334455555 8999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++++| |+.....+.++|.++.++
T Consensus 144 ~al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (230)
T TIGR03410 144 RAL-VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180 (230)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999 889999999999998764
No 91
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.3e-22 Score=190.32 Aligned_cols=153 Identities=16% Similarity=0.285 Sum_probs=117.1
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI------------EPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCeEcCcCCh
Confidence 4788899987 78999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhH--HhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQS--LAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~--l~~~~p~~~~~LSgGq~q 273 (391)
.. ....++++++....+ +.++. +. ....+..+++.. +.+..+. .|||||+|
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~LS~G~~q 142 (242)
T cd03295 71 VE-----LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPH---ELSGGQQQ 142 (242)
T ss_pred HH-----hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChh---hCCHHHHH
Confidence 11 224566776653211 11111 00 112234455543 5566666 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 143 rv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 184 (242)
T cd03295 143 RVGVARAL-AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE 184 (242)
T ss_pred HHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999 888999999999998764
No 92
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.2e-23 Score=213.84 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=125.0
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+.|++|+|+|.+. .+++|+||+| +|+++|||||||+||||++++|..++ +|++|+|.+||.++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY------------~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY------------DPTSGRILLDGVPI 532 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCCeEEECCeeh
Confidence 35689999999654 5899999999 89999999999999999999999999 99999999999999
Q ss_pred cccccccCCCcceeeeEEEEecc---CCCcccCCc-----ccchHHHH----hCChhHHhhhchhHH--------hhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLS---GGGYLADTP-----GFNQPSLL----KVTKQSLAQTFPEIK--------EMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dtp-----g~~~~~l~----~~~~~~l~~~~p~~~--------~~LSg 269 (391)
..+.... ..++++++.|+ +++.+.++- ...++.+. .....++...||+-. .+|||
T Consensus 533 ~~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 533 SDINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred hhcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 8776643 56888998887 445555442 22222222 223334444455422 38999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+|||||| +.+|.++|+| |.+....+.+.|.++.+.
T Consensus 608 GQKQRIAIARAL-lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~ 653 (716)
T KOG0058|consen 608 GQKQRIAIARAL-LRNPRVLILDEATSALDAESEYLVQEALDRLMQG 653 (716)
T ss_pred hHHHHHHHHHHH-hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999 788888888888877654
No 93
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.1e-22 Score=193.31 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=119.0
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ------------PPSEGEILLDAQPLESWS 79 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEehhhCC
Confidence 45678899998888999999999 99999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC----cccCCc-------------------ccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTP-------------------GFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
... ..+.++++++.... .+.++- ......+..+++.+..+..+. .||||
T Consensus 80 ~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG 151 (265)
T PRK10575 80 SKA-----FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD---SLSGG 151 (265)
T ss_pred HHH-----HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---cCCHH
Confidence 211 12346666654221 111100 001123445566666677777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 152 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 196 (265)
T PRK10575 152 ERQRAWIAMLV-AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196 (265)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998754
No 94
>PRK10908 cell division protein FtsE; Provisional
Probab=99.87 E-value=6.6e-23 Score=191.48 Aligned_cols=156 Identities=18% Similarity=0.316 Sum_probs=117.7
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++| +...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE------------RPSAGKIWFSGHDITRLKN 71 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCCh
Confidence 57888899 6678999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. .+...+.++++++....+ +.++ .++. ...+..+++....+..+. .|||||+||+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv 146 (222)
T PRK10908 72 RE--VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI---QLSGGEQQRV 146 (222)
T ss_pred hH--HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch---hCCHHHHHHH
Confidence 10 001234567777653211 1111 0111 123344555556666676 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.+++.+++++
T Consensus 147 ~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (222)
T PRK10908 147 GIARAV-VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186 (222)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 888999999999988643
No 95
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.1e-22 Score=191.74 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY------------KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred EEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCcceEEECCEECCCCCH
Confidence 4578899998888999999999 99999999999999999999999999 9999999999987643321
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccC--------------------Ccc----------cchHHHHhCChhHHhhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LAD--------------------TPG----------FNQPSLLKVTKQSLAQTF 260 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~D--------------------tpg----------~~~~~l~~~~~~~l~~~~ 260 (391)
... ....+.++++....+ +.+ .+. .....+..+++....+..
T Consensus 75 ~~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 75 HQI----ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred HHH----HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 100 112244444432111 111 000 011223455666667777
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 151 ~~---~LS~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 202 (255)
T PRK11300 151 AG---NLAYGQQRRLEIARCM-VTQPEILMLDEPAAGLNPKETKELDELIAELRNE 202 (255)
T ss_pred hh---hCCHHHHHHHHHHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh
Confidence 77 9999999999999999 9999999999 889999999999998764
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-22 Score=196.24 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL------------EAESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECC
Confidence 346789999964 35999999999 99999999999999999999999999 999999999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCC-C----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGG-G----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~-~----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
..+... ..+.++++++... . .+.++- +. ....+..+++....+..|. .||||
T Consensus 73 ~~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgG 144 (279)
T PRK13650 73 EENVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA---RLSGG 144 (279)
T ss_pred cCcHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCCHH
Confidence 322211 2345677776531 1 111110 11 1233456677777788887 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 145 q~qrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13650 145 QKQRVAIAGAV-AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189 (279)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998764
No 97
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-22 Score=201.25 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=120.8
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|+. ..+|++|||++ +|++++|+|+||||||||+++|+|++.+.+ .|++|+|.++|.++.
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~--------~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG--------RVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC--------CCcceEEEECCEECC
Confidence 45788899976 36999999999 999999999999999999999999982110 258999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccCCCccc----------CC----ccc--------chHHHHhCChh---HHhhhchhHHh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLA----------DT----PGF--------NQPSLLKVTKQ---SLAQTFPEIKE 265 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~----------Dt----pg~--------~~~~l~~~~~~---~l~~~~p~~~~ 265 (391)
..+.... .+...+.+++++|+....+. +. .+. ....+..+++. ...+.+|.
T Consensus 77 ~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~--- 152 (326)
T PRK11022 77 RISEKER-RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH--- 152 (326)
T ss_pred cCCHHHH-HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch---
Confidence 5443210 01122468888887421111 00 011 11224455553 34567888
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++.
T Consensus 153 ~LSgGq~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 153 QLSGGMSQRVMIAMAI-ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999 8999999999999997653
No 98
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=4.4e-23 Score=191.91 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=119.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.+.++++|+.-.++++|||++ +|++++||||||||||||+|+|+|.+ +|++|+|.|+|.++..+++.
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~------------~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY------------KPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc------------cCCCceEEECCcccCCCCHH
Confidence 467899999999999999999 89999999999999999999999999 99999999999998776653
Q ss_pred cCCCcceeeeEEEEeccCCCcccCC-----------------ccc----------chHHHHhCChhHHhhhchhHHhhcC
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADT-----------------PGF----------NQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dt-----------------pg~----------~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
........|.++......++.+.++ |.. ....++.+++.+.++.... .||
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~---~Ls 151 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG---NLS 151 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh---cCC
Confidence 2100001111111111111211111 111 1123456677777777666 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|||+++.||||+ +.+|+++++| .+.....+.+++.++++..
T Consensus 152 yG~qR~LEIArAL-a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~ 199 (250)
T COG0411 152 YGQQRRLEIARAL-ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG 199 (250)
T ss_pred hhHhHHHHHHHHH-hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999 9999999999 5678889999999988753
No 99
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.3e-22 Score=186.31 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=113.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++.. .++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~------------~~~~G~i~~~g~~~~~~~~- 67 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE------------TPQSGRVLINGVDVTAAPP- 67 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCcCCH-
Confidence 577888887644 3899999 89999999999999999999999999 9999999999976643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC------c---------ccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT------P---------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt------p---------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.+++++++...+ +.++ + ......+..+++....+..|. .|||||+||++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 138 (211)
T cd03298 68 ------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---ELSGGERQRVA 138 (211)
T ss_pred ------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---cCCHHHHHHHH
Confidence 113456666552211 1111 0 011123445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 139 ia~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 177 (211)
T cd03298 139 LARVL-VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE 177 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
No 100
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-23 Score=193.27 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=118.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecccccc
Confidence 4578899998888999999999 99999999999999999999999999 9999999999986531110
Q ss_pred cc-CCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 215 KS-GRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~-~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. .........++++++....+ +.++- +. ....+..+++....+..+. .|||||+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL---HLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHH
Confidence 00 00001234567777653211 11110 11 1122344566666677777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++++.
T Consensus 149 rv~laral-~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (242)
T PRK11124 149 RVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIRELAET 190 (242)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999 889999999999998653
No 101
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=2.5e-22 Score=189.83 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=116.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT------------RPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred EEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCeecCCCCH
Confidence 3578889998778999999999 99999999999999999999999999 9999999999976644322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------------------ccchHHHHhCChhHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------------------GFNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------------------g~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
... ..+.++++++....+ +.++. ......+..+++....+..+. .|
T Consensus 72 ~~~----~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~L 144 (242)
T TIGR03411 72 HQI----ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG---LL 144 (242)
T ss_pred HHH----HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh---hC
Confidence 100 123466666552211 11110 011222344555555666666 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||+||++||+|+ +.+|+++++| |+.....+.+++.++..
T Consensus 145 S~Ge~qrv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (242)
T TIGR03411 145 SHGQKQWLEIGMLL-MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG 191 (242)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999 88999999999999865
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=8.9e-23 Score=191.22 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=118.2
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVGQPLH 75 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeeEEECCEEcc
Confidence 45788899975 25899999999 99999999999999999999999999 999999999998765
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+... ......+.++++++....+ +.++. + .....+..+++.+..+..|. .|||||
T Consensus 76 ~~~~~~-~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Ge 151 (228)
T PRK10584 76 QMDEEA-RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA---QLSGGE 151 (228)
T ss_pred cCCHHH-HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh---hCCHHH
Confidence 432210 0000123567777653211 11110 0 01122445566666667777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 152 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 195 (228)
T PRK10584 152 QQRVALARAF-NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE 195 (228)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
No 103
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=2.4e-22 Score=179.51 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=104.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY------------KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCcCCHH
Confidence 578999998888999999999 99999999999999999999999999 99999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ...+.++++++ ||+||+||++||+|+ +.+|+++++|
T Consensus 71 ~----~~~~~i~~~~q-----------------------------------LS~G~~qrl~laral-~~~p~illlDEP~ 110 (163)
T cd03216 71 D----ARRAGIAMVYQ-----------------------------------LSVGERQMVEIARAL-ARNARLLILDEPT 110 (163)
T ss_pred H----HHhcCeEEEEe-----------------------------------cCHHHHHHHHHHHHH-hcCCCEEEEECCC
Confidence 0 02234555553 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~ 131 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQ 131 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999988643
No 104
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.2e-23 Score=190.19 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=124.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.+++.++|++..+++++|+.+ +||+++|+|||||||||.++++.|+. .|++|.|++++.+++..+-.
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv------------~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV------------RPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE------------ecCCceEEECCcccccCChH
Confidence 367788999999999999999 99999999999999999999999999 99999999999999876653
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCC-----------cc--c----chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADT-----------PG--F----NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dt-----------pg--~----~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+..++|++|+... .+.|+ .. . .+..+..+.+..+.+.... .|||||++|
T Consensus 75 ~R----ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~---sLSGGERRR 147 (243)
T COG1137 75 KR----ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY---SLSGGERRR 147 (243)
T ss_pred HH----hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc---ccccchHHH
Confidence 22 34567888887322 12222 00 0 1123445666677776666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|.||||| +.+|..+++| ||.....+.+++..|+..
T Consensus 148 ~EIARaL-a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r 188 (243)
T COG1137 148 VEIARAL-AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188 (243)
T ss_pred HHHHHHH-hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999999865
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.7e-22 Score=189.92 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=118.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI------------DPTEGSILIDGVDIKTID 71 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhcC
Confidence 34678899998888999999999 99999999999999999999999999 999999999998765332
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc----chHHHHhCChh-HHhhhchhHHhhcCcccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----NQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
... ..+.++++++....+ +.++. +. ....+..+++. .+.+..+. .|||||+||++||
T Consensus 72 ~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS~G~~qrl~la 143 (241)
T PRK14250 72 VID-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK---NLSGGEAQRVSIA 143 (241)
T ss_pred hHH-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc---cCCHHHHHHHHHH
Confidence 211 234567777663211 11110 00 11223445553 45666676 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 144 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (241)
T PRK14250 144 RTL-ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 (241)
T ss_pred HHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999 9999999999 888999999999998764
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=193.79 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=119.1
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ ...+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL------------RPQKGKVLVSGIDTGDFS 70 (274)
T ss_pred EEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEECCccc
Confidence 3578899995 466999999999 99999999999999999999999999 999999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++.... .+.++- +. ....+..+++....+..+. .|||||+|
T Consensus 71 ~~----~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~q 143 (274)
T PRK13644 71 KL----QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK---TLSGGQGQ 143 (274)
T ss_pred cH----HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc---cCCHHHHH
Confidence 11 0123456777765321 111110 11 1122445666667777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+++++.+++..
T Consensus 144 rv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 185 (274)
T PRK13644 144 CVALAGIL-TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185 (274)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 889999999999998753
No 107
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-22 Score=192.94 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=119.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM------------TPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEEhhhCC
Confidence 45688999999888999999999 99999999999999999999999999 899999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC------cc-------------cchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT------PG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
... ....+++++++...+ +.++ +. .....+..+++.+..+..+. .||||
T Consensus 76 ~~~-----~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G 147 (265)
T PRK10253 76 SKE-----VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD---TLSGG 147 (265)
T ss_pred HHH-----HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---cCChH
Confidence 110 123456666652211 1111 00 01123444566666777777 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 q~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~ 192 (265)
T PRK10253 148 QRQRAWIAMVL-AQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192 (265)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 889999999999998654
No 108
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.2e-22 Score=194.86 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=120.9
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~------------~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL------------LPEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCc
Confidence 346889999964 46999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+... ..+.++++++... ..+.++- ++ ....+..+++....+..|. .|||||
T Consensus 74 ~~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS~G~ 145 (279)
T PRK13635 74 ETVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---RLSGGQ 145 (279)
T ss_pred CcHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---cCCHHH
Confidence 32211 2345777776531 1111110 11 1223445566777777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 146 ~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 146 KQRVAIAGVL-ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 889999999999998765
No 109
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.9e-22 Score=194.73 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++++.++|+. ..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~ 71 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL------------KPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCccEEEECCEEC
Confidence 35788899964 36999999999 99999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChh--HHhhhchhHHhhc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQ--SLAQTFPEIKEML 267 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~--~l~~~~p~~~~~L 267 (391)
...+... ....+.+++++++... .+.++- ++ ....+..+++. .+.+..|. .|
T Consensus 72 ~~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~---~L 145 (287)
T PRK13637 72 TDKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF---EL 145 (287)
T ss_pred CCcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc---cC
Confidence 5432110 0123567788876321 111110 11 12234455664 55677777 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+++++.++..+
T Consensus 146 SgGq~qrv~iAraL-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 146 SGGQKRRVAIAGVV-AMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193 (287)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 899999999999998765
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=1.6e-22 Score=200.41 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=120.5
Q ss_pred CCeeEEEEcCC-------------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc
Q 016339 136 GYEPLFCSVES-------------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (391)
Q Consensus 136 g~~~v~~s~~~-------------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~ 201 (391)
.+++++++|.. ..+++++||+| +|++++|+|+||||||||+++|+|+. .|++|+
T Consensus 10 ~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~------------~p~~G~ 77 (331)
T PRK15079 10 EVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV------------KATDGE 77 (331)
T ss_pred EEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCcE
Confidence 34677777752 35899999999 99999999999999999999999999 899999
Q ss_pred ceecCccccccccccCCCcceeeeEEEEeccCC--C----cccCC---------cccc--------hHHHHhCCh-hHHh
Q 016339 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADT---------PGFN--------QPSLLKVTK-QSLA 257 (391)
Q Consensus 202 I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dt---------pg~~--------~~~l~~~~~-~~l~ 257 (391)
|+|+|.++....... .+...+.+++++|+.. . .+.++ ++.. ...+..+++ ....
T Consensus 78 I~~~G~~i~~~~~~~--~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 78 VAWLGKDLLGMKDDE--WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EEECCEECCcCCHHH--HHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 999998876543311 0112356888888731 1 11111 0111 122445565 3567
Q ss_pred hhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 156 ~~~p~---~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 156 NRYPH---EFSGGQCQRIGIARAL-ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred cCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 88888 9999999999999999 9999999999 889999999999999765
No 111
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.4e-22 Score=189.67 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=108.3
Q ss_pred HHhhcccC-CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEe
Q 016339 152 SLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (391)
Q Consensus 152 ~ls~~i~G-e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~ 230 (391)
+++|.++| .++||.|+||||||||||+|+|+. +|+.|.|.++|.-+..........+ -.|.++|+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~------------rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVF 82 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLT------------RPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVF 82 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccC------------CccccEEEECCEEeecccCCcccCh-hhheeeeEe
Confidence 35566666 899999999999999999999999 9999999998864432222111111 124455555
Q ss_pred ccCCC--------------cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec----
Q 016339 231 LSGGG--------------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 231 ~~~~~--------------~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
|+... +..+.+.| ......++++.+++++|. .|||||||||+|+||| +..|+++++|
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~~~~~f-d~iv~lLGI~hLL~R~P~---~LSGGEkQRVAIGRAL-Lt~P~LLLmDEPLa 157 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKSMRAQF-DQLVALLGIEHLLDRYPG---TLSGGEKQRVAIGRAL-LTAPELLLMDEPLA 157 (352)
T ss_pred eccccccceEEecchhhhhcccchHhH-HHHHHHhCcHHHHhhCCC---ccCcchhhHHHHHHHH-hcCCCeeeecCchh
Confidence 55222 22222222 234567899999999999 9999999999999999 9999999999
Q ss_pred --CHHHHHHHHHHHHHHHHHHhh
Q 016339 293 --DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 293 --D~~~~~~~~~ll~el~~~~~~ 313 (391)
|..|..+++-.++.+.++...
T Consensus 158 SLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCC
Confidence 778999999999999876554
No 112
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=3.6e-22 Score=192.23 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=120.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+
T Consensus 8 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI------------APDHGEILFDGENIPAMS 75 (269)
T ss_pred EEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccccC
Confidence 34578889998888999999999 89999999999999999999999999 999999999998765433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc--------ccc--------hHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP--------GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .....+.++++++....+ +.++. +.. ...+..+++....+..+. .|||||+|
T Consensus 76 ~~~--~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~q 150 (269)
T PRK11831 76 RSR--LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS---ELSGGMAR 150 (269)
T ss_pred hhh--HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHH
Confidence 211 001224567777663221 11111 000 112345566666677777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 151 rv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 192 (269)
T PRK11831 151 RAALARAI-ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA 192 (269)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999998764
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.6e-23 Score=197.89 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=119.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI------------EPTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccChh
Confidence 457788899999999999999 99999999999999999999999999 99999999999876543321
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. .....+.++++++....+ +.++- ++ ....+..+++.+..+..|. .|||||+||++
T Consensus 95 ~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~qrv~ 170 (269)
T cd03294 95 EL-RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---ELSGGMQQRVG 170 (269)
T ss_pred hh-hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---cCCHHHHHHHH
Confidence 10 000123577777663221 11110 11 1122445566666677777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++...
T Consensus 171 lAral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 209 (269)
T cd03294 171 LARAL-AVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209 (269)
T ss_pred HHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
No 114
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=2e-22 Score=194.55 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=125.9
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|.. ..++++|||++ +||+++|||.||||||||.++|+|+..+... ...+|+|.|+|.++.
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~ 75 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLL 75 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccc
Confidence 34678888854 36999999999 9999999999999999999999999831100 346899999999987
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcc----------cCC----cc---------cchHHHHhCChh---HHhhhchhHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL----------ADT----PG---------FNQPSLLKVTKQ---SLAQTFPEIK 264 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l----------~Dt----pg---------~~~~~l~~~~~~---~l~~~~p~~~ 264 (391)
.++++ ...+..-+.++++||+....+ .++ -+ .....+..+++. ...+.||.
T Consensus 76 ~l~~~-~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh-- 152 (316)
T COG0444 76 SLSEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-- 152 (316)
T ss_pred cCCHH-HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc--
Confidence 77764 111223467999999832111 110 00 112234455543 46789999
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||||+||+.||.|+ +.+|+++|.| |.....+++++|++++++...
T Consensus 153 -elSGGMrQRV~IAmal-a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~ 205 (316)
T COG0444 153 -ELSGGMRQRVMIAMAL-ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205 (316)
T ss_pred -ccCCcHHHHHHHHHHH-hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999 888999999999999985444
No 115
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-22 Score=199.65 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=121.1
Q ss_pred CCeeEEEEcCC----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 136 GYEPLFCSVES----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 136 g~~~v~~s~~~----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
.+++++++|.. ..++++|||+| +|++++|+|+||||||||+++|+|+. .|++|+|.+
T Consensus 7 ~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~------------~p~~G~i~~ 74 (327)
T PRK11308 7 QAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE------------TPTGGELYY 74 (327)
T ss_pred EEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC------------CCCCcEEEE
Confidence 35678888852 46899999999 99999999999999999999999999 899999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCccc------CC--------ccc--------chHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DT--------PGF--------NQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~------Dt--------pg~--------~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++...+... .+...+.+++++++....+. +. .+. ....+..+++. ...+.+|
T Consensus 75 ~g~~l~~~~~~~--~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p 152 (327)
T PRK11308 75 QGQDLLKADPEA--QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP 152 (327)
T ss_pred CCEEcCcCCHHH--HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC
Confidence 998876544321 01123568899887321110 00 011 12234455653 4667788
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
. +|||||+||++||+|+ +.+|+++|+| |......++++|.+++++.
T Consensus 153 ~---~LSgGq~QRv~iArAL-~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 153 H---MFSGGQRQRIAIARAL-MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred c---cCCHHHHHHHHHHHHH-HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 8 9999999999999999 9999999999 8899999999999997753
No 116
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.86 E-value=3e-22 Score=182.70 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=110.1
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. .... ....
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~-~~~~--~~~~ 66 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL------------RPQSGAVLIDGEPLDY-SRKG--LLER 66 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEECCEEccc-cccc--hHHH
Confidence 35567899999999 99999999999999999999999999 9999999999987631 1110 0112
Q ss_pred eeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 223 TRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 223 tr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
.+.++++++... . .+.++- +. ....+..+++.+..+..+. .|||||+||++||+|+
T Consensus 67 ~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~laral- 142 (190)
T TIGR01166 67 RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH---CLSGGEKKRVAIAGAV- 142 (190)
T ss_pred HhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 345777776531 1 111110 11 1122334566666677777 9999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+.+|+++|+| |+.....+.++|.++++
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 175 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 88999999999988754
No 117
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=1.2e-22 Score=191.78 Aligned_cols=155 Identities=16% Similarity=0.237 Sum_probs=118.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE------------EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCChh
Confidence 578889998888999999999 99999999999999999999999999 99999999999876532111
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. ....+.++++++....+ +.++- +. ....+..+++....+..+. .||+||+||+
T Consensus 72 ~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrv 145 (240)
T PRK09493 72 E---RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS---ELSGGQQQRV 145 (240)
T ss_pred H---HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChh---hcCHHHHHHH
Confidence 0 01234567776653211 11110 00 1123345566666667776 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++++| |+.....+.++|.++.++
T Consensus 146 ~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 146 AIARAL-AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999999 9999999999 889999999999998654
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=193.99 Aligned_cols=154 Identities=19% Similarity=0.292 Sum_probs=118.8
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 5 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 72 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL------------KPTSGSVLIRGEPITKEN 72 (277)
T ss_pred EEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCC
Confidence 3578899995 456999999999 99999999999999999999999999 999999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ...+.++++++.... .+.++ .++ ....+..+++....+..|. .|||||+|
T Consensus 73 ~~-----~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~q 144 (277)
T PRK13652 73 IR-----EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH---HLSGGEKK 144 (277)
T ss_pred HH-----HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc---cCCHHHHH
Confidence 11 123456677665321 11111 011 1223445566666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 145 rl~laraL-~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 145 RVAIAGVI-AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 889999999999998765
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=191.51 Aligned_cols=154 Identities=19% Similarity=0.270 Sum_probs=117.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 4 RTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL------------TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCcEEEECCEEhHHCCH
Confidence 3578899998888999999999 89999999999999999999999999 8999999999976543221
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------------------ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++.... .+.++- ......+..+++....+..+. .|||||
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 143 (255)
T PRK11231 72 RQ-----LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT---DLSGGQ 143 (255)
T ss_pred HH-----HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc---cCCHHH
Confidence 10 12345555554211 111100 011122344566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 144 ~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~ 187 (255)
T PRK11231 144 RQRAFLAMVL-AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187 (255)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 9999999999 889999999999988653
No 120
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=4.9e-22 Score=190.13 Aligned_cols=152 Identities=21% Similarity=0.299 Sum_probs=117.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 4 EARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL------------SPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred EEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcccCCH
Confidence 3578899998888999999999 89999999999999999999999999 9999999999976644322
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||+
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGe~qrv 143 (258)
T PRK13548 72 AE-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP---QLSGGEQQRV 143 (258)
T ss_pred HH-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc---cCCHHHHHHH
Confidence 11 12346666665322 111110 0 11223445566666677777 9999999999
Q ss_pred cccccccc------CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHL------GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 276 ~iaralh~------~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||+|+ + .+|+++|+| |+.....+.++|.++.
T Consensus 144 ~la~al-~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 144 QLARVL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187 (258)
T ss_pred HHHHHH-hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999 7 599999999 8899999999999986
No 121
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5e-23 Score=186.30 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=117.9
Q ss_pred CeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
...++++|++.. ++++|||++ +|++++|+|||||||||+|++|++++ .|++|.|.++|.++..-+.
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL------------~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL------------IPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc------------cCCCceEEEeecccccChH
Confidence 355677888876 999999999 89999999999999999999999999 9999999999987755443
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCC-------------------cccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADT-------------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dt-------------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
. ..++++.++-..+.|-.-| ..........+++.+.+++... .+|.||+||+
T Consensus 72 ~------vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~---~~S~G~kqkV 142 (245)
T COG4555 72 F------VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG---EFSTGMKQKV 142 (245)
T ss_pred H------HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh---hhchhhHHHH
Confidence 2 3466666663322221111 1111122234555666666555 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+||||+ +++|+++|+| |......+.+++..++.+...
T Consensus 143 ~iARAl-vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~ 185 (245)
T COG4555 143 AIARAL-VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA 185 (245)
T ss_pred HHHHHH-hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcE
Confidence 999999 9999999999 778888999999988875444
No 122
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=3.1e-22 Score=187.61 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=116.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred EEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEcCcCCH
Confidence 3578888998888999999999 99999999999999999999999998 9999999999976643322
Q ss_pred ccCCCcceeeeEEEEeccCCC---cccCCc-------------ccchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG---YLADTP-------------GFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~---~l~Dtp-------------g~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....++++++.... .+.++- ......+..+++. .+.+..+. .||+||+||++|
T Consensus 77 ~-----~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS~G~~qrv~l 148 (225)
T PRK10247 77 E-----IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIA---ELSGGEKQRISL 148 (225)
T ss_pred H-----HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcc---cCCHHHHHHHHH
Confidence 1 022455666655221 111110 0112234445553 35566666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (225)
T PRK10247 149 IRNL-QFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186 (225)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999 888999999999988654
No 123
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-22 Score=195.60 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.. ..
T Consensus 3 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~-~~ 69 (271)
T PRK13638 3 ATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL------------RPQKGAVLWQGKPLDY-SK 69 (271)
T ss_pred EEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCccEEEECCEEccc-cc
Confidence 3578999998888999999999 89999999999999999999999999 9999999999987631 11
Q ss_pred ccCCCcceeeeEEEEeccCCCc-----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .....+.+++++++.... +.++ .+.. ...+..+++.++.+..+. .|||||+||
T Consensus 70 ~~--~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qr 144 (271)
T PRK13638 70 RG--LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ---CLSHGQKKR 144 (271)
T ss_pred CC--HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCch---hCCHHHHHH
Confidence 10 001224567777653211 1110 1111 112334455556666666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 145 l~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (271)
T PRK13638 145 VAIAGAL-VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 889999999999998753
No 124
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-22 Score=197.75 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=119.2
Q ss_pred CCeeEEEEc----CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSV----ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~----~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++| +...++++|||+| +|++++|+|+||||||||+++|+|+..+. ..|++|+|+|+|.++.
T Consensus 5 ~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~--------~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 5 DIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN--------WRVTADRMRFDDIDLL 76 (330)
T ss_pred EEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC--------CCCcceEEEECCEECC
Confidence 357888999 3456999999999 99999999999999999999999998210 0368999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccCCCccc------CC----------cc-----------cchHHHHhCChh---HHhhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLA------DT----------PG-----------FNQPSLLKVTKQ---SLAQTF 260 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~------Dt----------pg-----------~~~~~l~~~~~~---~l~~~~ 260 (391)
..+.... .....+.+++++|+....+. ++ .+ .....+..+++. ...+.+
T Consensus 77 ~~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 77 RLSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred cCCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 5443210 00112468888887432110 00 00 011224445553 345677
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 156 p~---~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 207 (330)
T PRK15093 156 PY---ELTEGECQKVMIAIAL-ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN 207 (330)
T ss_pred ch---hCCHHHHHHHHHHHHH-HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 88 9999999999999999 9999999999 889999999999999764
No 125
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.86 E-value=3.2e-22 Score=214.31 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=127.9
Q ss_pred hcCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.++++++.|+.. .+|+++|+++ +|+++||+|+||||||||+++|.|++ .|++|+|.+||.+++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly------------~p~~G~I~~dg~dl~ 538 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY------------KPQQGRILLDGVDLN 538 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEeHH
Confidence 35579999999776 6999999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHH----HhCChhHHhhhch--------hHHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSL----LKVTKQSLAQTFP--------EIKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l----~~~~~~~l~~~~p--------~~~~~LSgG 270 (391)
.++... .++++++++|+ +.+.+.|+ |....+.+ ...+..+.....| |....||||
T Consensus 539 ~i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 539 DIDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred hcCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 887754 67899999998 34555444 44442222 2223333333333 233469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||++||||+ +++|+++|+| |++..+.+.+.|.++...
T Consensus 614 QrQrlalARaL-l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~ 658 (709)
T COG2274 614 QRQRLALARAL-LSKPKILLLDEATSALDPETEAIILQNLLQILQG 658 (709)
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 899999999988887644
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.2e-22 Score=189.10 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=115.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 5 TAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV------------PRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred EEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578889998888999999999 99999999999999999999999999 9999999999977643322
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc--------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP--------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp--------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .....++++++.... .+.++. . .....+..+++....+..+. .|||||+||
T Consensus 73 ~~----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qr 145 (241)
T PRK10895 73 HA----RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQ---SLSGGERRR 145 (241)
T ss_pred HH----HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchh---hCCHHHHHH
Confidence 10 012345666655221 111110 0 01122334455555555566 899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 146 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 146 VEIARAL-AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 888999999999988653
No 127
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=1.8e-22 Score=192.23 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=119.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE------------PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccc
Confidence 578899998888999999999 99999999999999999999999999 99999999999877543200
Q ss_pred cC--------CCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhc
Q 016339 216 SG--------RGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 216 ~~--------~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
.+ ......+.++++++....+ +.++- ++ ....+..+++....+..|. .|
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~L 147 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA---QL 147 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh---hc
Confidence 00 0001234577777763221 11110 11 1122334556566666676 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 148 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 148 SGGQQQRVAIARAL-AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 888999999999998764
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.9e-22 Score=192.17 Aligned_cols=155 Identities=14% Similarity=0.179 Sum_probs=119.2
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL------------KPQSGEIKIDGITISK 75 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEecCc
Confidence 34688999995 457999999999 89999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCCc-------ccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ...+.+++++++.. ..+.++- ++. ...+..+++....+..+. .|||||
T Consensus 76 ~~~~-----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 147 (271)
T PRK13632 76 ENLK-----EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ---NLSGGQ 147 (271)
T ss_pred CCHH-----HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcc---cCCHHH
Confidence 2211 12345777776531 1111110 111 122344566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....++++|.++..+
T Consensus 148 ~qrl~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 148 KQRVAIASVL-ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998764
No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=2.5e-22 Score=185.96 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=114.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~-~- 69 (207)
T PRK13539 4 EGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL------------PPAAGTIKLDGGDIDD-P- 69 (207)
T ss_pred EEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEeCcc-h-
Confidence 3578899998888999999999 99999999999999999999999999 8999999999876421 1
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
. ..+.++++++.... .+.++. + .....+..+++..+.+..+. .|||||+||++||+
T Consensus 70 --~----~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~la~ 140 (207)
T PRK13539 70 --D----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFG---YLSAGQKRRVALAR 140 (207)
T ss_pred --h----hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChh---hcCHHHHHHHHHHH
Confidence 0 12234444432111 111110 0 11223445566666666666 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 141 LL-VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99 9999999999 888999999999987543
No 130
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=6.6e-22 Score=187.83 Aligned_cols=159 Identities=17% Similarity=0.247 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE------------QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred EEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcccccc
Confidence 4578899998888999999999 99999999999999999999999999 8999999999987643211
Q ss_pred cc---CCCcceeeeEEEEeccCCCc----ccCCc--------cc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KS---GRGKHTTRHVSLLPLSGGGY----LADTP--------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~---~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. .......+.++++++....+ +.++. +. ....+..+++....+..+. .|||||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~Gq 149 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPR---RLSGGQ 149 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChh---hCChHH
Confidence 00 00011234577777653211 11111 00 1112333455445566666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 150 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (250)
T PRK11264 150 QQRVAIARAL-AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE 193 (250)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999988653
No 131
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.86 E-value=1.1e-21 Score=183.52 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=116.1
Q ss_pred CeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 57888899765 7999999999 99999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCC------CcccCCc---------ccc--------hHHHHhCChh-HHhhhchhHHhhc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG------GYLADTP---------GFN--------QPSLLKVTKQ-SLAQTFPEIKEML 267 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~------~~l~Dtp---------g~~--------~~~l~~~~~~-~l~~~~p~~~~~L 267 (391)
.+... .....+.++++++... ..+.++- ... ...+..+++. ...+..+. .|
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~L 146 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH---EL 146 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCch---hc
Confidence 33210 0012346777776631 1111110 000 0122334442 34555666 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 147 S~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (228)
T cd03257 147 SGGQRQRVAIARAL-ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194 (228)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999 888999999999998754
No 132
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=7e-22 Score=187.53 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=117.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~v 209 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. .|+ +|+|+++|.++
T Consensus 3 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 3 EIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN------------DLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred EEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceEEEECCEEc
Confidence 3578999998888999999999 99999999999999999999999999 777 99999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCC-------ccc---------chHHHHhCChh----HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF---------NQPSLLKVTKQ----SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~---------~~~~l~~~~~~----~l~~~~p~~~~~ 266 (391)
...+... ....+.++++++....+ +.++ .+. ....+..+++. ...+..+. .
T Consensus 71 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 144 (247)
T TIGR00972 71 YDKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL---G 144 (247)
T ss_pred cccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc---c
Confidence 5321100 01235677777763221 1111 010 01123334443 44555666 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 145 LSgG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (247)
T TIGR00972 145 LSGGQQQRLCIARAL-AVEPEVLLLDEPTSALDPIATGKIEELIQELKKK 193 (247)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999 889999999999998653
No 133
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.9e-22 Score=191.83 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=119.4
Q ss_pred CCeeEEEEcCC------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 136 g~~~v~~s~~~------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++|.+ ..++++++|++ +|++++|+||||||||||+++|+|+. .|++|+|.++|.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~ 73 (280)
T PRK13633 6 KCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL------------IPSEGKVYVDGLD 73 (280)
T ss_pred EEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEe
Confidence 45788999963 46999999999 89999999999999999999999999 9999999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcC
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
+...... ....+.+++++++.... +.++ .+. ....+..+++..+.+..|. .||
T Consensus 74 i~~~~~~----~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS 146 (280)
T PRK13633 74 TSDEENL----WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH---LLS 146 (280)
T ss_pred ccccccH----HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCC
Confidence 7532210 01234567777653211 1110 011 1223445677777777787 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 ~G~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (280)
T PRK13633 147 GGQKQRVAIAGIL-AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193 (280)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 889999999999998754
No 134
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8e-23 Score=206.82 Aligned_cols=156 Identities=18% Similarity=0.248 Sum_probs=118.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
+.+...|+...+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+...
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~------------~p~sG~I~i~G~~i~~~~~~~ 99 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI------------EPTRGQVLIDGVDIAKISDAE 99 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCEEEECCEECCcCCHHH
Confidence 34455566667899999999 89999999999999999999999999 999999999998875443211
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. .....+.++++++....+ +.++- ++ ....+..+++.+..+.+|. .|||||+||++|
T Consensus 100 l-~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~---~LSgGq~QRv~L 175 (400)
T PRK10070 100 L-REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD---ELSGGMRQRVGL 175 (400)
T ss_pred H-HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc---cCCHHHHHHHHH
Confidence 0 000124577888764322 11110 11 1123455677777788888 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 176 ArAL-~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 176 ARAL-AINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999 899999999999998754
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-22 Score=196.45 Aligned_cols=158 Identities=13% Similarity=0.198 Sum_probs=119.5
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|.+ ..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~i 71 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL------------KPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 45788999964 35999999999 89999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
...+... ......+.+++++++.. . .+.++- +. ....+..+++. ...+..|. .||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (286)
T PRK13646 72 THKTKDK-YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF---QMS 147 (286)
T ss_pred ccccccc-hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc---cCC
Confidence 5422110 00113456788887531 1 111110 11 11234455664 45666777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 148 gGq~qrv~laraL-~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (286)
T PRK13646 148 GGQMRKIAIVSIL-AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194 (286)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 899999999999998764
No 136
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.85 E-value=1.1e-22 Score=190.68 Aligned_cols=160 Identities=15% Similarity=0.061 Sum_probs=112.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+..+++++.|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|..+....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY------------PPDSGTVTVRGRVSSLLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEchhhc
Confidence 44567788899999999999999 99999999999999999999999999 999999999997654222
Q ss_pred cccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
......+..| .++.+.....+....+........+..+++.+..+..+. .|||||+||++||+|+ +.+|+++|+
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~laral-~~~p~llll 166 (224)
T cd03220 91 LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVK---TYSSGMKARLAFAIAT-ALEPDILLI 166 (224)
T ss_pred ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 1111111111 111100000000000000011122334556666666666 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~ 310 (391)
| |+.....+.+++.++..+
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhC
Confidence 9 888899999999987654
No 137
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=7.5e-22 Score=178.56 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=108.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...++.
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE------------EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccchh
Confidence 478889998888999999999 89999999999999999999999999 99999999999876544310
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....+.++++++....+ . ... ....+.. .||+||+||++||+|+ +.+|+++++|
T Consensus 71 ~---~~~~~~i~~~~q~~~~~--~--~~t--~~~~l~~------------~lS~G~~qr~~la~al-~~~p~llilDEP~ 128 (178)
T cd03229 71 L---PPLRRRIGMVFQDFALF--P--HLT--VLENIAL------------GLSGGQQQRVALARAL-AMDPDVLLLDEPT 128 (178)
T ss_pred H---HHHhhcEEEEecCCccC--C--CCC--HHHheee------------cCCHHHHHHHHHHHHH-HCCCCEEEEeCCc
Confidence 0 11235677777653211 0 000 0011100 1999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998764
No 138
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=1.2e-21 Score=185.10 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=111.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. .+|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS----------YEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCcceEEECCEecCCCCHH
Confidence 578899998888999999999 899999999999999999999999940 068999999999876543221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC--------cc------c--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT--------PG------F--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg------~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
.. ....++++++....+ +.++ .. . ....+..+++. .+.+..+. ..||
T Consensus 73 ~~----~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~LS 146 (243)
T TIGR01978 73 ER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN--EGFS 146 (243)
T ss_pred Hh----hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc--cCcC
Confidence 10 122355666553211 0000 00 0 01112223332 23333332 1499
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+++ +.+|+++|+| |+.....+.++|.++.+
T Consensus 147 ~G~~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (243)
T TIGR01978 147 GGEKKRNEILQMA-LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192 (243)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999 88999999999999865
No 139
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-22 Score=197.14 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=119.2
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++++.++|+. ..+|++|||+| +|++++|+||||||||||+++|+|+. .|++|+|.++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 71 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL------------QPTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 46789999964 46999999999 99999999999999999999999999 99999999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .....+.+++++++... .+.++ .+. ....+..+++. .+.+..|. .||
T Consensus 72 ~~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (290)
T PRK13634 72 TAGKKNKK-LKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPF---ELS 147 (290)
T ss_pred ccccccch-HHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcc---cCC
Confidence 43211000 00123457777775311 11111 011 12234456664 55677777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....++++|.++..+
T Consensus 148 gGq~qrv~lAraL-~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~ 194 (290)
T PRK13634 148 GGQMRRVAIAGVL-AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194 (290)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 889999999999998765
No 140
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.9e-22 Score=186.38 Aligned_cols=156 Identities=12% Similarity=0.218 Sum_probs=114.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP------------RATSGRIVFDGKDITDWQ 73 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEecCCCC
Confidence 34578899998888999999999 99999999999999999999999999 999999999998764432
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------ccc------hHHHHhC-ChhHHhhhchhHHhhcCccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GFN------QPSLLKV-TKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~~------~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
... ...+.++++++....+ +.++- ... ...+..+ ++.+..+..+. .|||||+||+
T Consensus 74 ~~~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LS~G~~qrl 146 (237)
T PRK11614 74 TAK----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG---TMSGGEQQML 146 (237)
T ss_pred HHH----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchh---hCCHHHHHHH
Confidence 210 0224466766653211 11110 000 0111122 12333344455 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 ~la~al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (237)
T PRK11614 147 AIGRAL-MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186 (237)
T ss_pred HHHHHH-HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 889999999999988654
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.4e-22 Score=186.10 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=113.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|+... .++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++.....
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~- 68 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL------------TPASGSLTLNGQDHTTTPP- 68 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCeecCcCCh-
Confidence 578899997543 3899999 89999999999999999999999999 9999999999986643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCC------cc---------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADT------PG---------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++ +. .....+..+++....+..|. .|||||+||++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~ 139 (232)
T PRK10771 69 ------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---QLSGGQRQRVA 139 (232)
T ss_pred ------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---cCCHHHHHHHH
Confidence 113455555542111 1110 00 11223445677777778887 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 140 laral-~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~ 178 (232)
T PRK10771 140 LARCL-VREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 (232)
T ss_pred HHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
No 142
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.1e-22 Score=181.67 Aligned_cols=149 Identities=12% Similarity=0.150 Sum_probs=112.6
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC---CCCCcceecCc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQ 207 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~---p~~G~I~~~g~ 207 (391)
.++++.++|. +..++++++|.+ +|++++|+||||||||||+++|+|+. + |++|+|+++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~G~i~i~g~ 72 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT------------EGNVSVEGDIHYNGI 72 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC------------CCCCCcceEEEECCE
Confidence 4578899995 346899999999 89999999999999999999999998 6 89999999998
Q ss_pred cccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
++..... ...+.++++++....+..-+ .. ..+. +......+..+. .||+||+||++||+|+ +.+|+
T Consensus 73 ~~~~~~~------~~~~~i~~~~q~~~~~~~~t--v~-~~l~-~~~~~~~~~~~~---~LS~Ge~qrl~laral-~~~p~ 138 (202)
T cd03233 73 PYKEFAE------KYPGEIIYVSEEDVHFPTLT--VR-ETLD-FALRCKGNEFVR---GISGGERKRVSIAEAL-VSRAS 138 (202)
T ss_pred ECccchh------hhcceEEEEecccccCCCCc--HH-HHHh-hhhhhccccchh---hCCHHHHHHHHHHHHH-hhCCC
Confidence 7654321 13456788877532211111 11 1111 100000345555 8999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.+++.++.++
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 889999999999998664
No 143
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.85 E-value=8.3e-22 Score=183.56 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=114.4
Q ss_pred CCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 71 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY------------KPTSGSVLLDGTDIRQL 71 (220)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCeEEECCEEhHHC
Confidence 45788889975 46999999999 99999999999999999999999999 89999999999765432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCCc-----c----cchHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADTP-----G----FNQPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-----g----~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.++++++....+ +.++- . .....+..+++.++.+.+|. ....|||||+
T Consensus 72 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 72 DPAD-----LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred CHHH-----HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 2110 123456666552211 11110 0 01122334455566665541 1138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 147 qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 188 (220)
T cd03245 147 QAVALARAL-LNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188 (220)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 999999999 9999999999 88899999999998754
No 144
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.85 E-value=1.1e-22 Score=204.57 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=118.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc----ccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEV 212 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~----~v~~v 212 (391)
..+..+|+...+++++||++ +|++++|+||||||||||+++|+|++ +|++|+|+++|. ++...
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~------------~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN------------PVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEecccccccC
Confidence 34556788888999999999 99999999999999999999999999 999999999985 33222
Q ss_pred ccccCCCcce-eeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 213 STKSGRGKHT-TRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~t-tr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
+... .+.. .+.++++++.+..+ +.++. +. ....+..+++....+.+|. +|||||+
T Consensus 96 ~~~~--l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~---~LSgGq~ 170 (382)
T TIGR03415 96 DAAT--LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG---ELSGGMQ 170 (382)
T ss_pred CHHH--HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHH
Confidence 2110 0111 24678888775432 12211 11 1223456677777788888 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||||+ +.+|+++|+| |+.....++++|.++..+
T Consensus 171 QRV~LARAL-a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~ 213 (382)
T TIGR03415 171 QRVGLARAF-AMDADILLMDEPFSALDPLIRTQLQDELLELQAK 213 (382)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 899999999999998764
No 145
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.85 E-value=1.1e-21 Score=183.22 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=118.2
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|+++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR------------SVQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEhHh
Confidence 4678888865 56999999999 89999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC--------cc--------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT--------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt--------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+... .....+.++++++....+ +.++ +. .....+..+++.+..+..|. .||+||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~ 146 (220)
T TIGR02982 72 ASEKE--LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH---NLSGGQ 146 (220)
T ss_pred cCHhH--HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh---hCCHHH
Confidence 33211 001234566666652211 1110 01 11223445666666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++++| |+.....+.++|.++..+
T Consensus 147 ~qrv~laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 147 KQRVAIARAL-VHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999 889999999999998653
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=1.2e-21 Score=187.08 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL------------RPDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEEcccCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999987654332
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCCcc-------------------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPG-------------------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg-------------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.. ..+.++++++.... .+.++.. .....+..+++.++.+..+. .|||||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 142 (256)
T TIGR03873 71 RA-----RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS---TLSGGE 142 (256)
T ss_pred HH-----HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc---cCCHHH
Confidence 11 12345666655321 1111100 01122344556666666676 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 143 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (256)
T TIGR03873 143 RQRVHVARAL-AQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186 (256)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999998753
No 147
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=4.6e-22 Score=185.89 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=116.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. .
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~~~---~ 67 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL------------RPTSGEIIFDGHPWTR---K 67 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccc---c
Confidence 578889998888999999999 99999999999999999999999999 9999999999876531 1
Q ss_pred cCCCcceeeeEEEEeccCCC----cccCCc-------c----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----YLADTP-------G----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----~l~Dtp-------g----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++++.... .+.++. + .....+..+++.+..+..+. .|||||+||++||+|
T Consensus 68 ------~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rv~lara 138 (223)
T TIGR03740 68 ------DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK---QFSLGMKQRLGIAIA 138 (223)
T ss_pred ------ccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHh---hCCHHHHHHHHHHHH
Confidence 11346666654221 111110 1 11223445566666666676 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 139 l-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 139 L-LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred H-hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 9 9999999999 889999999999998643
No 148
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-22 Score=195.31 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=118.2
Q ss_pred CCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|+.. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 70 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL------------QPTEGKVTVGDIVV 70 (288)
T ss_pred EEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 357889999642 4899999999 99999999999999999999999999 99999999999887
Q ss_pred cccccccCCCcceeeeEEEEeccCC-----CcccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .....+.+++++++.. ..+.++- +. ....+..+++. .+.+..|. .||
T Consensus 71 ~~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---~LS 146 (288)
T PRK13643 71 SSTSKQKE-IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF---ELS 146 (288)
T ss_pred cccccccc-HHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc---cCC
Confidence 43211100 0112356778887531 1111110 11 11223445653 45667777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+++ +.+|+++|+| |+.....+.+++.++++.
T Consensus 147 gGqkqrvaiA~aL-~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~ 193 (288)
T PRK13643 147 GGQMRRVAIAGIL-AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193 (288)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 9999999999 889999999999998753
No 149
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3e-22 Score=196.29 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=118.7
Q ss_pred CCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~~ 71 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL------------LPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEEeceec
Confidence 457889999653 5899999999 99999999999999999999999999 99999999987654
Q ss_pred ccccc-------------cc------CCCcceeeeEEEEeccCCC-c----ccCC-------ccc--------chHHHHh
Q 016339 210 GEVST-------------KS------GRGKHTTRHVSLLPLSGGG-Y----LADT-------PGF--------NQPSLLK 250 (391)
Q Consensus 210 ~~v~~-------------~~------~~~~~ttr~i~~v~~~~~~-~----l~Dt-------pg~--------~~~~l~~ 250 (391)
..... .. .......+.+++++++... + +.++ .+. ....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 21100 00 0001123568888885311 1 1111 011 1223445
Q ss_pred CChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 251 VTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 251 ~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++. ++.++.|. .|||||+||++||+|+ +.+|+++|+| |+.....+++++.+++..
T Consensus 152 ~gL~~~~~~~~~~---~LSgGqkqrvalA~aL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 214 (305)
T PRK13651 152 VGLDESYLQRSPF---ELSGGQKRRVALAGIL-AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ 214 (305)
T ss_pred cCCChhhhhCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 6664 56777888 9999999999999999 9999999999 889999999999998743
No 150
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=5.7e-22 Score=184.12 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=115.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|.. .+.++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 67 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI------------EPASGSIKVNDQSHTGLAP- 67 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccCCh-
Confidence 4778888863 467899999 89999999999999999999999999 9999999999987643211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc---------------cchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG---------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg---------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++.. .....+..+++.++.+..|. .||+||+||++
T Consensus 68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 138 (213)
T TIGR01277 68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---QLSGGQRQRVA 138 (213)
T ss_pred ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---cCCHHHHHHHH
Confidence 234566766653211 111110 11223445666666777777 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.++|.++.++
T Consensus 139 laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 177 (213)
T TIGR01277 139 LARCL-VRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177 (213)
T ss_pred HHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998754
No 151
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=1.2e-21 Score=187.68 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=117.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~ 211 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|+ +|+|+++|.++..
T Consensus 6 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 6 RVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI------------TGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred EEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCCceEEEECCEeccc
Confidence 3578899998888999999999 99999999999999999999999998 654 5999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc-----------------------ccchHHHHhCChhHHhhhchhHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-----------------------GFNQPSLLKVTKQSLAQTFPEIK 264 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------------------g~~~~~l~~~~~~~l~~~~p~~~ 264 (391)
............+.++++++....+ +.++. ......+..+++....+..+.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 151 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS-- 151 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc--
Confidence 2110000011234466666653211 11110 001223344566666677777
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 152 -~LS~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 201 (262)
T PRK09984 152 -TLSGGQQQRVAIARAL-MQQAKVILADEPIASLDPESARIVMDTLRDINQN 201 (262)
T ss_pred -ccCHHHHHHHHHHHHH-hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999 889999999999998764
No 152
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.85 E-value=4.4e-22 Score=189.91 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=116.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-cccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~ 213 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++. .++.++
T Consensus 6 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~~~~~i~~v~ 73 (251)
T PRK09544 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV------------APDEGVIKRNGKLRIGYVP 73 (251)
T ss_pred EEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCccCEEEec
Confidence 3578899998888999999999 99999999999999999999999999 999999998763 456666
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
+.+....+.+..+.. ..... ...........+..+++.+..+..+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 74 q~~~~~~~l~~~~~~-~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qrv~laral-~~~p~lllLDE 146 (251)
T PRK09544 74 QKLYLDTTLPLTVNR-FLRLR--PGTKKEDILPALKRVQAGHLIDAPMQ---KLSGGETQRVLLARAL-LNRPQLLVLDE 146 (251)
T ss_pred cccccccccChhHHH-HHhcc--ccccHHHHHHHHHHcCChHHHhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 654322211100000 00000 00001112334556777777777777 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++.++
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999988654
No 153
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.2e-21 Score=176.42 Aligned_cols=135 Identities=20% Similarity=0.309 Sum_probs=107.8
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL------------KPDSGEIKVLGKDIKKEPE- 69 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccchH-
Confidence 467888888778999999999 99999999999999999999999999 8999999999987643221
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.....+++++++...+ ++.. .... + .|||||+||++||+++ +.+|+++|+|
T Consensus 70 -----~~~~~i~~~~q~~~~~----~~~t--v~~~-----~---------~LS~G~~qrv~laral-~~~p~illlDEPt 123 (173)
T cd03230 70 -----EVKRRIGYLPEEPSLY----ENLT--VREN-----L---------KLSGGMKQRLALAQAL-LHDPELLILDEPT 123 (173)
T ss_pred -----hhhccEEEEecCCccc----cCCc--HHHH-----h---------hcCHHHHHHHHHHHHH-HcCCCEEEEeCCc
Confidence 1235678888763211 1110 0001 1 1999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~ 144 (173)
T cd03230 124 SGLDPESRREFWELLRELKKE 144 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999998654
No 154
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.85 E-value=1.5e-21 Score=179.94 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=111.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~----------~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK----------YEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc----------CCCCccEEEECCEECCcCCHH
Confidence 578899998888999999999 899999999999999999999999930 078999999999877654322
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.. ....++++++....+ ++.. ..++...++. .|||||+||++||+++ +.+|+++++|
T Consensus 73 ~~----~~~~i~~v~q~~~~~----~~~~--------~~~~l~~~~~---~LS~G~~qrv~laral-~~~p~illlDEPt 132 (200)
T cd03217 73 ER----ARLGIFLAFQYPPEI----PGVK--------NADFLRYVNE---GFSGGEKKRNEILQLL-LLEPDLAILDEPD 132 (200)
T ss_pred HH----hhCcEEEeecChhhc----cCcc--------HHHHHhhccc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 10 123477777653211 1111 1122234444 8999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++.+.
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~ 153 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREE 153 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHC
Confidence 888999999999998653
No 155
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=7.8e-22 Score=184.73 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=115.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+..+ ....|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-------~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDL-------IPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc-------ccCCCCCeEEEECCEEhhhcchH
Confidence 578899998888999999999 9999999999999999999999998610 01157899999999876443210
Q ss_pred cCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCChhHHhhhc--hhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTKQSLAQTF--PEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~~~l~~~~--p~~~~~LSgGq~qr 274 (391)
. ....+.++++++....+ +.++- +. ....+..+++....+.. +. .|||||+||
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~LSgG~~qr 149 (227)
T cd03260 76 V---LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHAL---GLSGGQQQR 149 (227)
T ss_pred H---HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcc---cCCHHHHHH
Confidence 0 01234567777663221 11110 00 01123344444444443 35 899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 150 v~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 190 (227)
T cd03260 150 LCLARAL-ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE 190 (227)
T ss_pred HHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC
Confidence 9999999 9999999999 889999999999998654
No 156
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.8e-22 Score=194.22 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+.+++++++|+.. .+|+++||.+ +|++++|+|+||||||||+++|+|+. +|++|+|+++|.+
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~------------~p~~G~I~i~g~~ 89 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI------------KSKYGTIQVGDIY 89 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCEE
Confidence 4468899999642 5999999999 89999999999999999999999999 9999999999987
Q ss_pred ccccc-----------cccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChh-HH
Q 016339 209 VGEVS-----------TKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQ-SL 256 (391)
Q Consensus 209 v~~v~-----------~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~-~l 256 (391)
++... ..........+.+++++++.... +.++ .+. ....+..+++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 75320 00000011346688888863211 1111 011 11223345554 45
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+..|. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++.+
T Consensus 170 ~~~~~~---~LSgGqkqRvaiAraL-~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~ 225 (320)
T PRK13631 170 LERSPF---GLSGGQKRRVAIAGIL-AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN 225 (320)
T ss_pred hcCCcc---cCCHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC
Confidence 666676 9999999999999999 9999999999 889999999999998654
No 157
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.7e-22 Score=178.48 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=122.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++|++..+++++|+.+ +|++++|+||||||||||+.+++++. ++++|+|+++|.++...+.+
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~------------~~d~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL------------KKDSGEITIDGLELTSTPSK 71 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc------------cccCceEEEeeeecccCChH
Confidence 467889999999999999999 89999999999999999999999999 99999999999988654432
Q ss_pred cC--------CCcce----e-ee-EEE--EeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SG--------RGKHT----T-RH-VSL--LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~--------~~~~t----t-r~-i~~--v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
.- ...|. | +. ++| +|...|-.-.+........++.+.++.+.++|-. +|||||+||..+|+
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd---~LSGGQrQRAfIAM 148 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD---ELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH---hcccchhhhhhhhe
Confidence 10 00011 1 11 111 1111111111112334556778888999999888 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.+ ..+.+.+++| |....-+++++|+.+..+...
T Consensus 149 Vl-aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~K 187 (252)
T COG4604 149 VL-AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187 (252)
T ss_pred ee-eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCC
Confidence 99 9999999999 778888899999988776554
No 158
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=4.4e-22 Score=185.17 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=116.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|..+...
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~i~~~- 78 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL------------HVESGQIQIDGKTATRG- 78 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCeeEEECCEEccch-
Confidence 34578899998888999999999 89999999999999999999999999 99999999999766421
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-----chHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-----NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-----~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ..+.++++++....+ +.++. +. ....+..+++.+..+..+. .||+||+||++|
T Consensus 79 --~-----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~l 148 (214)
T PRK13543 79 --D-----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR---QLSAGQKKRLAL 148 (214)
T ss_pred --h-----hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChh---hCCHHHHHHHHH
Confidence 0 123466666542211 11110 11 1123344565555666666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 149 ARLW-LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 9999 9999999999 889999999999887643
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=1.3e-21 Score=188.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=114.8
Q ss_pred CCeeEEEEcCC---------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~~---------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.+++++++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 73 (267)
T PRK15112 6 EVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGELLID 73 (267)
T ss_pred EEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCCEEEEC
Confidence 35788888962 36899999999 89999999999999999999999999 9999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcccC--------------Cccc--------chHHHHhCCh-hHHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD--------------TPGF--------NQPSLLKVTK-QSLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D--------------tpg~--------~~~~l~~~~~-~~l~~~~p~ 262 (391)
|.++...... ...+.++++++....++.. ..+. ....+..+++ ....+..+.
T Consensus 74 g~~~~~~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 74 DHPLHFGDYS-----YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred CEECCCCchh-----hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 9876421110 1223567777653210000 0011 1122334555 344555566
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 149 ---~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (267)
T PRK15112 149 ---MLAPGQKQRLGLARAL-ILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred ---hcCHHHHHHHHHHHHH-HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 9999999999 889999999999998764
No 160
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-22 Score=195.11 Aligned_cols=158 Identities=21% Similarity=0.220 Sum_probs=117.3
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~ 71 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL------------KPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEC
Confidence 35788999974 35999999999 99999999999999999999999999 99999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------cc--------chHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GF--------NQPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~--------~~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
........ .......++++++... . .+.++- +. ....+..+++. .+.+..+. .||
T Consensus 72 ~~~~~~~~-~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---~LS 147 (287)
T PRK13641 72 TPETGNKN-LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPF---ELS 147 (287)
T ss_pred ccccccch-HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcc---cCC
Confidence 43210000 0012245677776531 1 111110 10 12224445664 46666677 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 148 gGq~qrl~laral-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~ 194 (287)
T PRK13641 148 GGQMRRVAIAGVM-AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA 194 (287)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999 9999999999 889999999999998643
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=1.2e-21 Score=188.06 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=116.6
Q ss_pred CCeeEEEEcC---------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~---------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 71 (265)
T TIGR02769 4 EVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE------------KPAQGTVSFR 71 (265)
T ss_pred EEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEC
Confidence 3578888885 356999999999 99999999999999999999999999 9999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCC--C----cccCC--------ccc--------chHHHHhCChh-HHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADT--------PGF--------NQPSLLKVTKQ-SLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dt--------pg~--------~~~~l~~~~~~-~l~~~~p~ 262 (391)
|.++........ ....+.++++++... . .+.++ .++ ....+..+++. .+.+..+.
T Consensus 72 g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 149 (265)
T TIGR02769 72 GQDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPR 149 (265)
T ss_pred CEEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 987654322110 002245777777531 1 11110 011 11223345553 45566666
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 150 ---~LSgGe~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 150 ---QLSGGQLQRINIARAL-AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred ---hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999 888999999999998764
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.2e-21 Score=188.59 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=117.2
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE------------KVKSGEIFYNNQAITD 75 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCc
Confidence 346788999975 35899999999 99999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-Cc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-GY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.... ...+.+++++++.. .+ +.++ .+. ....+..+++.+..+..+. .||+||
T Consensus 76 ~~~~-----~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 147 (269)
T PRK13648 76 DNFE-----KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPN---ALSGGQ 147 (269)
T ss_pred CCHH-----HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcc---cCCHHH
Confidence 2211 12345677776532 11 1110 011 1122334555555666666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 148 ~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 148 KQRVAIAGVL-ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998654
No 163
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-21 Score=193.77 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=116.8
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++... ++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++........
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT------------RPQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccccc
Confidence 67788887543 899999 89999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc---------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG---------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
.+...+.+++++++...+ +.++-. .....+..+++.++.+..|. .|||||+||++||||+ +.
T Consensus 71 -~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LSgGq~qRvalaraL-~~ 145 (352)
T PRK11144 71 -LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG---SLSGGEKQRVAIGRAL-LT 145 (352)
T ss_pred -cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcc---cCCHHHHHHHHHHHHH-Hc
Confidence 011235678888774322 111111 11233556677777788888 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+++|+| |+.....+.++|.++.++
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999 888999999999998765
No 164
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.7e-22 Score=192.82 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=119.7
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..-.
T Consensus 7 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~------------~p~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 7 KVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL------------KPSSGRILFDGKPIDYSR 74 (283)
T ss_pred EEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCccEEEECCEECCCCc
Confidence 4578999996 567999999999 89999999999999999999999999 999999999998763211
Q ss_pred cccCCCcceeeeEEEEeccCCCc-----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY-----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~-----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... ......+++++++.... +.++ .++ ....+..+++..+.+..+. .|||||+|
T Consensus 75 ~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LS~G~~q 148 (283)
T PRK13636 75 KGL---MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTH---CLSFGQKK 148 (283)
T ss_pred chH---HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcc---cCCHHHHH
Confidence 100 01234577777763211 1111 011 1222445666666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 149 rl~laraL-~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 149 RVAIAGVL-VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred HHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999 899999999999998764
No 165
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.84 E-value=1.6e-21 Score=186.31 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=115.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----c
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-----v 209 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+ +
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL------------APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred EEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCcccccccc
Confidence 4578899998888999999999 99999999999999999999999999 9999999999986 4
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc------cCC------------cc----cchHHHHhCChh-HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADT------------PG----FNQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dt------------pg----~~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
...+... ........++++++.....+ .++ .+ .....+..+++. ...+..+. .
T Consensus 76 ~~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~ 151 (258)
T PRK11701 76 YALSEAE-RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPT---T 151 (258)
T ss_pred ccCCHHH-HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCc---c
Confidence 3222110 00001245777777632100 000 00 001123344443 24455566 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 152 LS~Gq~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (258)
T PRK11701 152 FSGGMQQRLQIARNL-VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200 (258)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 888999999999988654
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.3e-21 Score=181.36 Aligned_cols=151 Identities=16% Similarity=0.232 Sum_probs=118.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|+...++++++|.+ +|++++|+||||||||||+++|+|+. +|+.|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~------------~~~~G~i~~~g~~~~~~~~- 69 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE------------TPTSGEILLDGKDITNLPP- 69 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 578899998888999999999 89999999999999999999999999 9999999999987654322
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
....+++++++...+ +.++- +. ....+..+++.+..+..|. .||+||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qrl~ 140 (232)
T cd03300 70 ------HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS---QLSGGQQQRVA 140 (232)
T ss_pred ------hhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHHH
Confidence 124566666653211 11110 00 1122334566666677776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 141 laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 141 IARAL-VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 889999999999998764
No 167
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=1.9e-21 Score=185.18 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-----c
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-----v 209 (391)
.+++++++|++..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+ +
T Consensus 5 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 5 QVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------------APDHGTATYIMRSGAELEL 72 (253)
T ss_pred EEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEeccccccccc
Confidence 4578899998878999999999 99999999999999999999999999 8999999999865 3
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc------cCCc-------c---------cchHHHHhCChh-HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTP-------G---------FNQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dtp-------g---------~~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
...+... ..+...+.++++++.....+ .++- . .....+..+++. ...+..+. .
T Consensus 73 ~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~ 148 (253)
T TIGR02323 73 YQLSEAE-RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPR---A 148 (253)
T ss_pred ccCCHHH-HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCch---h
Confidence 3222110 00001234667666532100 0000 0 001123344443 34555666 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.+++.++..+
T Consensus 149 LSgG~~qrv~laral-~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~ 197 (253)
T TIGR02323 149 FSGGMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197 (253)
T ss_pred cCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 889999999999987654
No 168
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.84 E-value=1.1e-21 Score=187.36 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.+.|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++..++
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGSIVVNGQTINLVR 73 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEccccc
Confidence 34578999998888999999999 99999999999999999999999999 899999999998764322
Q ss_pred cccC--------CCcceeeeEEEEeccCCCc----ccCCccc----------------chHHHHhCChhHHh-hhchhHH
Q 016339 214 TKSG--------RGKHTTRHVSLLPLSGGGY----LADTPGF----------------NQPSLLKVTKQSLA-QTFPEIK 264 (391)
Q Consensus 214 ~~~~--------~~~~ttr~i~~v~~~~~~~----l~Dtpg~----------------~~~~l~~~~~~~l~-~~~p~~~ 264 (391)
...+ ......+.++++++....+ +.++..+ ....+..+++.... +..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 151 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPV-- 151 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcc--
Confidence 1100 0011235678888764321 1222110 11123344444432 45555
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 152 -~LS~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 201 (257)
T PRK10619 152 -HLSGGQQQRVSIARAL-AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201 (257)
T ss_pred -cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 889999999999998754
No 169
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.8e-21 Score=182.44 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=112.5
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 70 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY------------DPQKGQILIDGIDIRDI 70 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEeHHHc
Confidence 346788999975 46999999999 89999999999999999999999999 89999999999776543
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccc----hHHHHhCChhHHhhhch--------hHHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFN----QPSLLKVTKQSLAQTFP--------EIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~----~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~ 272 (391)
+... ..+.++++++.... .+.++ +... ...+..+++..+.+.+| .....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 71 SRKS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred CHHH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 2211 23446676665321 11111 0001 11122233444443332 01138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+++ +.+|+++|+| |+.....+.+++.++.
T Consensus 146 ~rv~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 146 QLLAIARAM-LRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8889999999998874
No 170
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.84 E-value=1e-21 Score=211.93 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=123.3
Q ss_pred hcCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|. +..+|+++||++ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE------------TPESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcC
Confidence 356789999995 356999999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCCcc----cch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPG----FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg----~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++... .++++++++|+. .+.+.|+-. ..+ ..+...++.+.....|. ....|||||
T Consensus 519 ~~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQ 593 (686)
T TIGR03797 519 GLDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593 (686)
T ss_pred cCCHHH-----HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 776542 457789999883 333433311 222 22444555555555553 123699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||+++|||+ +.+|+++|+| |+...+.+.+.+.++
T Consensus 594 rQRialARAl-l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 594 RQRLLIARAL-VRKPRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 888888888888775
No 171
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.84 E-value=2.3e-21 Score=193.77 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++.. + +++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++........
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~i~~~~~~~~ 69 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT------------RPDEGEIVLNGRTLFDSRKGIF 69 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECccCccccc
Confidence 5778887755 4 899999 89999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc-------------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
.....+.++++++....+ +.++-. .....+..+++..+.+..|. .|||||+||++||+|
T Consensus 70 -~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGqkqRvalAra 145 (354)
T TIGR02142 70 -LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG---RLSGGEKQRVAIGRA 145 (354)
T ss_pred -cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 011235677887764322 111110 01223445667777788887 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 146 L-~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~ 180 (354)
T TIGR02142 146 L-LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180 (354)
T ss_pred H-HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999 889999999999998765
No 172
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=7.6e-22 Score=186.39 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=116.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE------------QPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 578889998888999999999 99999999999999999999999999 8999999999977643221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++. +. ....+..+++....+..+. .||+||+||++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~lS~G~~qrl~ 140 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN---QLSGGQRQRVA 140 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh---hCCHHHHHHHH
Confidence 234566666652211 11110 00 1122334455555566666 89999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +..|+++++| |+...+.+.++|.++.+.
T Consensus 141 laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 141 LARAL-AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998764
No 173
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=1.2e-21 Score=194.16 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=118.1
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQ 207 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~ 207 (391)
.++++.++|. ...++++|||++ +|++++|+|+||||||||+++|+|+. .|. +|+|+|+|.
T Consensus 14 ~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~------------~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL------------AANGRIGGSATFNGR 81 (330)
T ss_pred EEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCCCeEEEECCE
Confidence 4578888884 246899999999 99999999999999999999999999 664 999999999
Q ss_pred cccccccccCCCcceeeeEEEEeccCCCc------ccC----C----cccc--------hHHHHhCChh---HHhhhchh
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGY------LAD----T----PGFN--------QPSLLKVTKQ---SLAQTFPE 262 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~~~~------l~D----t----pg~~--------~~~l~~~~~~---~l~~~~p~ 262 (391)
++...+.... .+...+.+++++|+.... +.+ . .+.. ...+..+++. ...+.+|.
T Consensus 82 ~i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 82 EILNLPEKEL-NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred ECCcCCHHHH-HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 8765543210 001124688998874211 100 0 0111 1123334443 23456787
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|||||+||++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 161 ---~LSgG~~QRv~IArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 161 ---EFSGGMRQRVMIAMAL-LCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred ---cCCHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 889999999999999775
No 174
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.84 E-value=7.4e-22 Score=208.60 Aligned_cols=156 Identities=20% Similarity=0.305 Sum_probs=124.4
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|+ +..+++++||.+ +|+++|||||||||||||+|+|++++ +|++|+|.+||.++..+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~------------~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY------------DPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCEehhhc
Confidence 56899999999 678999999999 99999999999999999999999999 99999999999999888
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... .++.+++++|+. .+.+.++ |...++. +......+....+|+ ....||||||
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 7654 567788888873 3334433 2222222 223334444334443 2247999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |++....+++.+.++.
T Consensus 472 QrlaiARal-l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 472 QRLAIARAL-LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred HHHHHHHHH-hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 999999999 9999999999 8889899998888665
No 175
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.4e-21 Score=188.33 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=116.0
Q ss_pred cCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+.+++++++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~ 74 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI------------ISETGQTIVGDYA 74 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEE
Confidence 4467899999764 4899999999 89999999999999999999999999 9999999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCC-----cccCC-------cccc--------hHHHHhCCh-hHHhhhchhHHhhc
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGFN--------QPSLLKVTK-QSLAQTFPEIKEML 267 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~~--------~~~l~~~~~-~~l~~~~p~~~~~L 267 (391)
+..............+.++++++.... .+.++ .+.. ...+..+++ .++.+..+. .|
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~---~L 151 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF---EL 151 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChh---hC
Confidence 642100000000123457777775311 11111 0111 112333444 245555566 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 152 S~Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 152 SGGQKRRVALAGII-AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred CHHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 889999999999998754
No 176
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-21 Score=188.74 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=119.1
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++++.++|+ ...+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL------------KPTSGEVLIKGEPIKYDK 70 (275)
T ss_pred EEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEECcccc
Confidence 3578899996 456999999999 99999999999999999999999999 899999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCC-----cccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~-----~l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
.. .......+++++++... .+.++- +. ....+..+++.++.+..+. .|||||+|
T Consensus 71 ~~---~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LS~Gq~q 144 (275)
T PRK13639 71 KS---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH---HLSGGQKK 144 (275)
T ss_pred ch---HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChh---hCCHHHHH
Confidence 10 01123567777776321 111110 11 1123445566666777777 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 145 rv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (275)
T PRK13639 145 RVAIAGIL-AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186 (275)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999 889999999999998754
No 177
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-21 Score=187.22 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=114.3
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++++.++|+ +..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV------------RLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEhHHh
Confidence 45688999995 567999999999 99999999999999999999999999 99999999998764210
Q ss_pred ccccCCCcceeeeEEEEeccCCC------cccCC--------------c-----ccchHHHHhCChhHHhhhchhHHhhc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG------YLADT--------------P-----GFNQPSLLKVTKQSLAQTFPEIKEML 267 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~------~l~Dt--------------p-----g~~~~~l~~~~~~~l~~~~p~~~~~L 267 (391)
. ....++++++.... .+.++ + ......+..+++.+..+..+. .|
T Consensus 75 ~--------~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~L 143 (272)
T PRK15056 75 L--------QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG---EL 143 (272)
T ss_pred h--------ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc---cC
Confidence 0 01123444333110 00000 0 011223455666666677777 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.+++.+
T Consensus 144 SgG~~qrv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (272)
T PRK15056 144 SGGQKKRVFLARAI-AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191 (272)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999 889999999999998653
No 178
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.7e-21 Score=183.73 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=114.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP-------EARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-------CCCCceEEEECCEECCcCC
Confidence 34678899998888999999999 999999999999999999999999982100 0147999999998765432
Q ss_pred cccCCCcceeeeEEEEeccCCC----cccCCcc-------c----------chHHHHhCChh----HHhhhchhHHhhcC
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPG-------F----------NQPSLLKVTKQ----SLAQTFPEIKEMLK 268 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~----~l~Dtpg-------~----------~~~~l~~~~~~----~l~~~~p~~~~~LS 268 (391)
... ....++++++.... .+.++-. . ....+..+++. ...+..+. .||
T Consensus 77 ~~~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS 148 (250)
T PRK14247 77 VIE-----LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAG---KLS 148 (250)
T ss_pred HHH-----HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc---cCC
Confidence 211 23467777776321 1111110 0 01112223331 23344555 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 149 gG~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 149 GGQQQRLCIARAL-AFQPEVLLADEPTANLDPENTAKIESLFLELKK 194 (250)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 88999999999998853
No 179
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.84 E-value=1.8e-21 Score=175.24 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=105.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL------------RPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEEcccCC
Confidence 5788889975 45899999999 89999999999999999999999999 999999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
... ..+.+++++++.. +. +. ...+.+ |||||+||++||+|+ +.+|+++|+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~--~~--~~---tv~~~l---------------LS~G~~qrv~la~al-~~~p~~lllDE 122 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDE--LF--SG---SIAENI---------------LSGGQRQRLGLARAL-YGNPRILVLDE 122 (173)
T ss_pred HHH-----HHhheEEECCCCc--cc--cC---cHHHHC---------------cCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 211 2345777776532 11 11 011111 999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~~ 309 (391)
|+.....+.+++.++++
T Consensus 123 Pt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 123 PNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred CccccCHHHHHHHHHHHHHHHh
Confidence 88899999999988864
No 180
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=2.7e-21 Score=175.27 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=96.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
|+++.++|++..+++++ +.+ +|++++|+||||||||||+|+|+|+. +|++|+|.++|..++
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~----- 64 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL------------IPNGDNDEWDGITPV----- 64 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCcEEEECCEEEE-----
Confidence 68999999998899884 788 89999999999999999999999999 999999999875432
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
++++... |||||+||+++|+|+ +.+|+++++|
T Consensus 65 ------------~~~q~~~--------------------------------LSgGq~qrv~laral-~~~p~lllLDEPt 99 (177)
T cd03222 65 ------------YKPQYID--------------------------------LSGGELQRVAIAAAL-LRNATFYLFDEPS 99 (177)
T ss_pred ------------EEcccCC--------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEECCc
Confidence 2222110 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++.++
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHc
Confidence 888999999999988654
No 181
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-21 Score=187.22 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=118.8
Q ss_pred CCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 136 GYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.++++.++|++. .++++++|++ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 6 EVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF------------EEFEGKVKIDGELLTA 73 (277)
T ss_pred EEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEECCc
Confidence 457889999742 4899999999 99999999999999999999999999 9999999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCC-----CcccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
.+.. ...+.+++++++.. ..+.++ .+.. ...+..+++.++.+..|. .|||||
T Consensus 74 ~~~~-----~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~ 145 (277)
T PRK13642 74 ENVW-----NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA---RLSGGQ 145 (277)
T ss_pred CCHH-----HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc---cCCHHH
Confidence 2211 12356777777631 111111 0111 122344566666777777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 ~qrv~lAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 146 KQRVAVAGII-ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 889999999999998764
No 182
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=5.3e-21 Score=177.62 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=113.4
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
+++++|++..+ +++|++ + ++++|+||||||||||+++|+|+. +|++|+|.++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE------------KPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEecccccchhh
Confidence 68899988765 999999 8 999999999999999999999999 9999999999987643211000
Q ss_pred CCcceeeeEEEEeccCCCc----ccCCcc-------------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 218 RGKHTTRHVSLLPLSGGGY----LADTPG-------------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~----l~Dtpg-------------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
.....+.++++++....+ +.++-. .....+..+++....+..+. .|||||+||++||+|
T Consensus 70 -~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~a 145 (214)
T cd03297 70 -LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA---QLSGGEKQRVALARA 145 (214)
T ss_pred -hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcc---cCCHHHHHHHHHHHH
Confidence 011234677777763321 111100 01122344555555666666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 146 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (214)
T cd03297 146 L-AAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180 (214)
T ss_pred H-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999 889999999999998764
No 183
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=2.2e-21 Score=187.25 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=114.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC--------CCcceecC
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFED 206 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~--------~G~I~~~g 206 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|+ +|+|.++|
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~------------~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL------------TGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCcccccccCCceEEEECC
Confidence 3578999998888999999999 89999999999999999999999998 777 89999999
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCC----cccCC------c-------------ccchHHHHhCChhHHhhhchhH
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADT------P-------------GFNQPSLLKVTKQSLAQTFPEI 263 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~----~l~Dt------p-------------g~~~~~l~~~~~~~l~~~~p~~ 263 (391)
.++....... ..+.++++++.... .+.++ + ......+..+++..+.+..+.
T Consensus 71 ~~~~~~~~~~-----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 144 (272)
T PRK13547 71 EPLAAIDAPR-----LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT- 144 (272)
T ss_pred EEcccCCHHH-----HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-
Confidence 7664322110 11223444443110 11010 0 011223445566666666676
Q ss_pred HhhcCccccccccccccccc---------CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHL---------GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~---------~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ + .+|+++|+| |+.....+.+++.++.++
T Consensus 145 --~LSgG~~qrv~laral-~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 203 (272)
T PRK13547 145 --TLSGGELARVQFARVL-AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD 203 (272)
T ss_pred --cCCHHHHHHHHHHHHH-hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 7 599999999 889999999999998764
No 184
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=1.5e-21 Score=202.73 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=117.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 5 QISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL------------PLLSGERQSQFSHITRLSF 72 (490)
T ss_pred EEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCceEEECCcccccCCH
Confidence 4578999998878999999999 99999999999999999999999999 8999999998765532211
Q ss_pred ccCCCcceeeeEEEEeccCC------------CcccCC-------cccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG------------GYLADT-------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~------------~~l~Dt-------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ..+.++++++... ..+.+. .......+..+++.++.+..+. .|||||+||+
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv 144 (490)
T PRK10938 73 EQ-----LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFK---YLSTGETRKT 144 (490)
T ss_pred HH-----HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcc---cCCHHHHHHH
Confidence 10 1122344443311 111111 0112234556677777778888 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 145 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 184 (490)
T PRK10938 145 LLCQAL-MSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184 (490)
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 899999999999998654
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=2e-21 Score=202.91 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=119.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV------------PPDSGTLEIGGNPCARLT 79 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCC
Confidence 34678999999888999999999 89999999999999999999999999 999999999997764332
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-----------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-----------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
... .....++++++....+ +.++- ......+..+++....+..+. .|||||+||++||
T Consensus 80 ~~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la 152 (510)
T PRK15439 80 PAK----AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAG---SLEVADRQIVEIL 152 (510)
T ss_pred HHH----HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChh---hCCHHHHHHHHHH
Confidence 110 0113467777763221 11110 011123445566555666677 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 153 ~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (510)
T PRK15439 153 RGL-MRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189 (510)
T ss_pred HHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Confidence 999 9999999999 899999999999998653
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-21 Score=203.27 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=117.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH------------EPTKGTITINNINYNKLDH 74 (510)
T ss_pred EEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc------------CCCccEEEECCEECCCCCH
Confidence 4578999998888999999999 89999999999999999999999999 8999999999987644322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-----------c-----------cchHHHHhCChhHHhhhchhHHhhcC
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-----------G-----------FNQPSLLKVTKQSLAQTFPEIKEMLK 268 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-----------g-----------~~~~~l~~~~~~~l~~~~p~~~~~LS 268 (391)
... ..+.++++++....+ +.++- + .....+..+++....+..+. .||
T Consensus 75 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS 147 (510)
T PRK09700 75 KLA----AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA---NLS 147 (510)
T ss_pred HHH----HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh---hCC
Confidence 100 113466666652211 11110 0 01112334555555566677 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.+++++
T Consensus 148 gG~~qrv~ia~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (510)
T PRK09700 148 ISHKQMLEIAKTL-MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194 (510)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999 9999999999 899999999999998654
No 187
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.84 E-value=9.4e-22 Score=183.81 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCeeEEEEcCC-------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-
Q 016339 136 GYEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED- 206 (391)
Q Consensus 136 g~~~v~~s~~~-------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g- 206 (391)
.++++.++|+. ..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.+++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~~~ 70 (224)
T TIGR02324 3 EVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY------------LPDSGRILVRHE 70 (224)
T ss_pred EEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEEecC
Confidence 35788888852 36899999999 99999999999999999999999999 89999999973
Q ss_pred -c--cccccccccCCCcceeeeEEEEeccCCCcc----cCC-------cccc--------hHHHHhCChhH-HhhhchhH
Q 016339 207 -Q--RVGEVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGFN--------QPSLLKVTKQS-LAQTFPEI 263 (391)
Q Consensus 207 -~--~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~~--------~~~l~~~~~~~-l~~~~p~~ 263 (391)
. ++...+... ......+.++++++....+. .++ .+.. ...+..+++.. +.+..+.
T Consensus 71 g~~~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 148 (224)
T TIGR02324 71 GAWVDLAQASPRE-VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPA- 148 (224)
T ss_pred CCccchhhcCHHH-HHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcc-
Confidence 2 332211110 00001234667776532110 000 0111 11233344433 2344555
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.+++.+++.+
T Consensus 149 --~LS~G~~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 149 --TFSGGEQQRVNIARGF-IADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred --cCCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 889999999999988643
No 188
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.5e-21 Score=196.60 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.|+++.++|+.+. +|+++||+| +|+.+||+|+|||||||+||+|.++. + .+|+|+++|+++..+
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~------------d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF------------D-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh------------c-cCCcEEECCeeHhhh
Confidence 55789999999887 999999999 99999999999999999999999998 7 999999999999888
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---c-----cCCcccchHH----HHhCChhHHhhhchhH--------HhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---L-----ADTPGFNQPS----LLKVTKQSLAQTFPEI--------KEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l-----~Dtpg~~~~~----l~~~~~~~l~~~~p~~--------~~~LSgGq~ 272 (391)
.... +++.++++||+...+ + ..+|...... ....++.+....+|+- ...|||||+
T Consensus 419 ~~~S-----lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred ChHH-----hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 7654 667899999984322 1 2234433322 2344555555555442 237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
||+++|||+ +.+|+++++| |.+....+++++..
T Consensus 494 QrvslaRa~-lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 494 QRVSLARAF-LKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHH-hcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 999999999 9999999999 78888888888877
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=4.2e-21 Score=183.13 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=113.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC----CCCcceecCccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p----~~G~I~~~g~~v 209 (391)
+.+++++++| +..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL------------PAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCcCCEEEECCeec
Confidence 3457888899 567999999999 99999999999999999999999998 77 999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCccc--CC-----------ccc------chHHHHhCChhH---HhhhchhHHhhc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DT-----------PGF------NQPSLLKVTKQS---LAQTFPEIKEML 267 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l~--Dt-----------pg~------~~~~l~~~~~~~---l~~~~p~~~~~L 267 (391)
... . ...+.+++++++....+. .+ .+. ....+..+++.. +.+..+. .|
T Consensus 72 ~~~---~----~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~L 141 (254)
T PRK10418 72 APC---A----LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPF---EM 141 (254)
T ss_pred ccc---c----cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCc---cc
Confidence 411 0 022457777776321110 00 010 011223334332 3345555 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 142 S~Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~ 189 (254)
T PRK10418 142 SGGMLQRMMIALAL-LCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189 (254)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999 888999999999998654
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=2.1e-21 Score=202.33 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY------------TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred EEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999977643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc----------c---------cchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP----------G---------FNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp----------g---------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
... ..+.++++++....+ +.++- + .....+..+++.+..+..+. .|||||
T Consensus 74 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~ 146 (501)
T PRK10762 74 KSS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG---ELSIGE 146 (501)
T ss_pred HHH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh---hCCHHH
Confidence 100 123466666652211 11110 0 01122444555555666677 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 147 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (501)
T PRK10762 147 QQMVEIAKVL-SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190 (501)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 9999999999 889999999999998654
No 191
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.84 E-value=1.6e-21 Score=176.35 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=106.4
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|.+. .++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~- 69 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL------------KPQQGEITLDGVPVSDL- 69 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCEEHHHH-
Confidence 57788888765 6999999999 89999999999999999999999999 89999999999876543
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
.. ...+.++++++... +.. . ...+. .+. .||+||+||++||+|+ +.+|+++|+|
T Consensus 70 ~~-----~~~~~i~~~~q~~~--~~~--~---tv~~~---------i~~---~LS~G~~qrv~laral-~~~p~~lllDE 124 (178)
T cd03247 70 EK-----ALSSLISVLNQRPY--LFD--T---TLRNN---------LGR---RFSGGERQRLALARIL-LQDAPIVLLDE 124 (178)
T ss_pred HH-----HHHhhEEEEccCCe--eec--c---cHHHh---------hcc---cCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 11 12345777776432 111 1 00111 145 8999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIR 308 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~ 308 (391)
|+.....+++++.++.
T Consensus 125 P~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 125 PTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 7889999999998874
No 192
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=2e-21 Score=203.55 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=122.1
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|.+ ..+++++|+++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV------------DPTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEehh
Confidence 3567899999975 35999999999 99999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+ ..+...+..+....+|. ....||||
T Consensus 388 ~~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 388 DADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hCCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 665432 456788888873 3333332 22222 22334555555555542 22479999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||+++|||+ +.+|+++++| |+...+.+.+.+.++.
T Consensus 463 q~qri~laRal-~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 505 (529)
T TIGR02857 463 QAQRLALARAF-LRDAPLLLLDEPTAHLDAETEALVTEALRALA 505 (529)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 7888888888887764
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-21 Score=188.68 Aligned_cols=161 Identities=14% Similarity=0.215 Sum_probs=113.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE-------GCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccccc
Confidence 45688999998888999999999 999999999999999999999999971000 0168999999997664211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-------hHHHHhCCh----hHHhhhchhHHhhcCcccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-------QPSLLKVTK----QSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-------~~~l~~~~~----~~l~~~~p~~~~~LSgGq~ 272 (391)
... ....+.++++++....+ +.++- ++. ...+..+++ ....+..+. .|||||+
T Consensus 87 ~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G~~ 160 (269)
T PRK14259 87 VDP---VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGY---SLSGGQQ 160 (269)
T ss_pred CCH---HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcc---cCCHHHH
Confidence 100 01234577777653221 11110 110 011222222 223344455 8999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 161 qrl~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 202 (269)
T PRK14259 161 QRLCIARTI-AIEPEVILMDEPCSALDPISTLKIEETMHELKK 202 (269)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 88999999999998854
No 194
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.5e-21 Score=174.03 Aligned_cols=132 Identities=20% Similarity=0.316 Sum_probs=104.7
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++. .++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..+...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 70 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY------------DPTSGEILIDGVDLRDLD 70 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhhhcC
Confidence 57788899775 7999999999 99999999999999999999999999 899999999998765433
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
... ..+.++++++... +.+ . ...+. .||+||+||++||+++ +.+|+++|+|
T Consensus 71 ~~~-----~~~~i~~~~~~~~--~~~--~---t~~e~---------------lLS~G~~~rl~la~al-~~~p~llllDE 122 (171)
T cd03228 71 LES-----LRKNIAYVPQDPF--LFS--G---TIREN---------------ILSGGQRQRIAIARAL-LRDPPILILDE 122 (171)
T ss_pred HHH-----HHhhEEEEcCCch--hcc--c---hHHHH---------------hhCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 211 2245666665421 111 0 00000 1999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEIR 308 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el~ 308 (391)
|+.....+.+++.++.
T Consensus 123 P~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 123 ATSALDPETEALILEALRALA 143 (171)
T ss_pred CCcCCCHHHHHHHHHHHHHhc
Confidence 8889999999998875
No 195
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-21 Score=187.65 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=118.5
Q ss_pred CCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC---CcceecCccc
Q 016339 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~---G~I~~~g~~v 209 (391)
.+++++++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. .|++ |+|.++|.++
T Consensus 7 ~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~------------~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 7 EFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL------------LPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCCCCCcEEEECCEEC
Confidence 45788899964 46999999999 99999999999999999999999999 8887 8999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC-----CcccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~-----~~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSg 269 (391)
...... .....+++++++.. ..+.++ .+. ....+..+++....+..|. .|||
T Consensus 75 ~~~~~~-----~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LS~ 146 (282)
T PRK13640 75 TAKTVW-----DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA---NLSG 146 (282)
T ss_pred CcCCHH-----HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc---cCCH
Confidence 432211 12245677776531 111111 111 1123445677777788887 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 147 G~~qrv~laral-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 192 (282)
T PRK13640 147 GQKQRVAIAGIL-AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK 192 (282)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999 889999999999988654
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.2e-22 Score=190.60 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=115.3
Q ss_pred CCeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i 71 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH------------VPTQGSVRVDDTLI 71 (280)
T ss_pred EEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEc
Confidence 35788999964 35899999999 89999999999999999999999999 99999999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCC--C---cccCCc-------ccc--------hHHHHhCChh-HHhhhchhHHhhcC
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGG--G---YLADTP-------GFN--------QPSLLKVTKQ-SLAQTFPEIKEMLK 268 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~--~---~l~Dtp-------g~~--------~~~l~~~~~~-~l~~~~p~~~~~LS 268 (391)
...+.... .....+.++++++... . .+.++- ++. ...+..+++. .+.+..+. .||
T Consensus 72 ~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 147 (280)
T PRK13649 72 TSTSKNKD-IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPF---ELS 147 (280)
T ss_pred cccccccC-HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc---cCC
Confidence 54321000 0012345777777531 1 111110 111 1112334443 34455566 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++++.
T Consensus 148 gG~~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (280)
T PRK13649 148 GGQMRRVAIAGIL-AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS 194 (280)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 9999999999 889999999999988653
No 197
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=4.4e-21 Score=178.79 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV------------ELSSGSILIDGVDISK 70 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhHh
Confidence 346889999964 36999999999 89999999999999999999999999 9999999999977643
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCCcc----cc----hHHHHhCChhHHhh-----------hchhHHhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG----FN----QPSLLKVTKQSLAQ-----------TFPEIKEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg----~~----~~~l~~~~~~~l~~-----------~~p~~~~~LSg 269 (391)
.+... ..+.++++++.... .+.++-. .. ...+..+++.+... ..+. .||+
T Consensus 71 ~~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~---~LS~ 142 (221)
T cd03244 71 IGLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGE---NLSV 142 (221)
T ss_pred CCHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC---cCCH
Confidence 32211 23456666665321 1111100 01 11122334433332 2344 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 143 G~~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 143 GQRQLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 8889999999998875
No 198
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.8e-21 Score=183.04 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=112.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL------------ELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred EEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CcccCCCCceEEEECCEEc
Confidence 4578899998888999999999 99999999999999999999999998 54 599999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc----ccCCccc-----------------chHHHHhCCh----hHHhhhchhHH
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGF-----------------NQPSLLKVTK----QSLAQTFPEIK 264 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtpg~-----------------~~~~l~~~~~----~~l~~~~p~~~ 264 (391)
....... ......++++++....+ +.++..+ ....+..+++ ....+..+.
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-- 148 (253)
T PRK14267 74 YSPDVDP---IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS-- 148 (253)
T ss_pred cccccCh---HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh--
Confidence 4211000 01234577777763221 1111100 0111222232 122344455
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 149 -~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14267 149 -NLSGGQRQRLVIARAL-AMKPKILLMDEPTANIDPVGTAKIEELLFELKK 197 (253)
T ss_pred -hCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999 9999999999 88899999999999854
No 199
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-21 Score=182.38 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.+.|++..++++++|.+ +|++++|+||||||||||+++|+|+..+. .|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI---------AKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred eeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---------CCCceEEEECCEecccCCH
Confidence 3578899998878999999999 89999999999999999999999987210 3689999999987754321
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCccc-----------------chHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPGF-----------------NQPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~-----------------~~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
. ...+.++++++....+ +.++..+ ....+..+++. .+.+..+. .||||
T Consensus 75 ~-----~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 146 (246)
T PRK14269 75 V-----ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNAL---ALSGG 146 (246)
T ss_pred H-----HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcc---cCCHH
Confidence 1 1234577777764322 1111100 01112233331 22333444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++++| |+.....+.++|.++..
T Consensus 147 ~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 190 (246)
T PRK14269 147 QQQRLCIARAL-AIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190 (246)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88899999999998754
No 200
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=4.2e-21 Score=180.90 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=109.9
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY------------VPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCeehHhcC
Confidence 5788889964 46899999999 99999999999999999999999999 999999999998764332
Q ss_pred cccCCCcceeeeEEEEeccCCC---cccCC-----cccchH----HHHhCChhHHh-----------hhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQP----SLLKVTKQSLA-----------QTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~~----~l~~~~~~~l~-----------~~~p~~~~~LSgG 270 (391)
... ..+.++++++.... .+.++ ++.... .+...+..++. +..+. .||||
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~LSgG 142 (237)
T cd03252 71 PAW-----LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA---GLSGG 142 (237)
T ss_pred HHH-----HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC---cCCHH
Confidence 211 22346666665221 11111 111111 11112223322 23344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 143 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 143 QRQRIAIARAL-IHNPRILIFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 8899999999999875
No 201
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.9e-21 Score=181.51 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=109.7
Q ss_pred CeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
++++.++|++. .++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|..+...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCEEEECCEEhhhCC
Confidence 57888899765 7999999999 99999999999999999999999999 999999999997664332
Q ss_pred cccCCCcceeeeEEEEeccCCC---cccCC-----cccchH----HHHhCChhHHh-----------hhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQP----SLLKVTKQSLA-----------QTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~~----~l~~~~~~~l~-----------~~~p~~~~~LSgG 270 (391)
... ..+.+++++++... .+.++ +..... .+...+..++. +..+. .||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~LS~G 142 (234)
T cd03251 71 LAS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGV---KLSGG 142 (234)
T ss_pred HHH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC---cCCHH
Confidence 110 12345666654211 11111 000101 11112222222 22334 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 143 ~~qrv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 186 (234)
T cd03251 143 QRQRIAIARAL-LKDPPILILDEATSALDTESERLVQAALERLMK 186 (234)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 88999999999998853
No 202
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=2.3e-21 Score=205.53 Aligned_cols=155 Identities=25% Similarity=0.258 Sum_probs=120.3
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|++ |++|+|.++|.++..+
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECCEecccC
Confidence 5578887644 5567999999999 99999999999999999999999986 5689999999988777
Q ss_pred ccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... .++++++++|+ +.+.+.|+ |.+.+.. +...++.+....+|. -...||||||
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 6543 46789999997 33444433 3333332 334455555444443 2236999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.+.++.
T Consensus 492 QRialARAl-l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~ 532 (588)
T PRK11174 492 QRLALARAL-LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889999988888764
No 203
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.83 E-value=8.1e-21 Score=180.55 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=112.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC--CCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS--PHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl--~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+ . +|++|+|+++|.++..
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~------------~~~~G~i~~~g~~~~~ 75 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY------------KILEGDILFKGESILD 75 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC------------cCCCceEEECCEEccc
Confidence 34678889998778999999999 9999999999999999999999998 4 7899999999987755
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC--------------ccc--------chHHHHhCChh-HHhhhchhHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT--------------PGF--------NQPSLLKVTKQ-SLAQTFPEIK 264 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt--------------pg~--------~~~~l~~~~~~-~l~~~~p~~~ 264 (391)
.+.... ....+.++++....+ ..+. +.. ....+..+++. .+.+..+.
T Consensus 76 ~~~~~~----~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 149 (252)
T CHL00131 76 LEPEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-- 149 (252)
T ss_pred CChhhh----heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc--
Confidence 432110 112355555542111 0000 000 01122333433 23334332
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 150 ~~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (252)
T CHL00131 150 EGFSGGEKKRNEILQMA-LLDSELAILDETDSGLDIDALKIIAEGINKLMTS 200 (252)
T ss_pred cCCCHHHHHHHHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 14999999999999999 9999999999 889999999999998643
No 204
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.9e-21 Score=186.10 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=113.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p-------~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYP-------EQRAEGEILLDGENILTPK 86 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC-------CCCcceEEEECCEEccccc
Confidence 34688999998878999999999 999999999999999999999999972000 0158999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc--------ccc--------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP--------GFN--------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp--------g~~--------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++. +.. ...+..+++ ....+..+. .||||
T Consensus 87 ~~---~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 160 (260)
T PRK10744 87 QD---IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGY---SLSGG 160 (260)
T ss_pred cc---hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC---CCCHH
Confidence 00 001235677777763211 11110 110 111222232 122344444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 161 q~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 204 (260)
T PRK10744 161 QQQRLCIARGI-AIRPEVLLLDEPCSALDPISTGRIEELITELKQ 204 (260)
T ss_pred HHHHHHHHHHH-HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999853
No 205
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-21 Score=197.56 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=125.2
Q ss_pred CeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++.|.++ .++.+++|++ +|+.++|||+||||||||+++|+|+. +|++|+|.++|.+...++.
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~------------~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL------------APTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCccccccCH
Confidence 35889999877 8999999999 89999999999999999999999999 9999999999999887776
Q ss_pred ccCCCcceeeeEEEEecc---CCCcccCC-----cccchH----HHHhCChhHHhhh-------chhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQP----SLLKVTKQSLAQT-------FPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~-------~p~~~~~LSgGq~qr~ 275 (391)
.. ..++++++++. +.+.+.+| |...+. .+...++.++... ..+-...|||||+||+
T Consensus 391 ~~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 391 EA-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HH-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 43 35778888887 23334444 222222 2334455444444 1122236999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
++|||+ +++++|+++| |.++...+++.|.++.++.-.
T Consensus 466 aLARAl-l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktv 508 (559)
T COG4988 466 ALARAL-LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 (559)
T ss_pred HHHHHh-cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeE
Confidence 999999 9999999999 889999999999998876433
No 206
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.9e-21 Score=183.42 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=116.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.+.|++. ++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~------------~p~~G~v~i~g~~~~~~~~- 68 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI------------KPDSGKILLNGKDITNLPP- 68 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcCcCCh-
Confidence 56788888764 899999999 89999999999999999999999999 9999999999987643321
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCcc------------c---chHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTPG------------F---NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtpg------------~---~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
..+.++++++....+ +.++.. . ....+..+++....+..+. .|||||+||++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrl~ 139 (235)
T cd03299 69 ------EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE---TLSGGEQQRVA 139 (235)
T ss_pred ------hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcc---cCCHHHHHHHH
Confidence 123566666653211 111100 0 1122445566666677776 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +..|+++++| |+.....+.+++.++..+
T Consensus 140 laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 140 IARAL-VVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred HHHHH-HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999 889999999999998654
No 207
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.83 E-value=2.1e-21 Score=210.25 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=120.6
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+. ..+|+++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY------------QPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEeHHH
Confidence 557899999974 57999999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
++... .++.+++++|+. .+.+.|+ |..... .+...++.+....+|. -...|||||
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 66532 467788998873 3333333 222222 2334455555444443 224699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
+||++||||+ +.+|+++|+| |+.....+.+.+.+
T Consensus 621 rQRiaLARal-l~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 621 RQRLEIARAL-VRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHH-hhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 9999999999 9999999999 78888888887765
No 208
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=2.6e-21 Score=204.90 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=122.6
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|.+ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~------------~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW------------DPQQGEILLNGQPIA 405 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEhh
Confidence 3567899999964 46899999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+ ..+..+++.+.... |. ....||||
T Consensus 406 ~~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 406 DYSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred hCCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 665432 346688888873 3333333 22222 22345566555555 43 22369999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||||+ +.+|+++|+| |++..+.+.+.+.++.
T Consensus 480 qrqRialARal-l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 480 EQRRLGIARAL-LHDAPLLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999 9999999999 8889999998888774
No 209
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.9e-21 Score=200.54 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=116.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+|+|+|+. +| ++|+|+++|.++..
T Consensus 6 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~G~i~~~g~~~~~ 73 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY------------PHGTYEGEIIFEGEELQA 73 (506)
T ss_pred EEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCC
Confidence 34578999998888999999999 89999999999999999999999998 64 89999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc---------c---------cchHHHHhCChhHHhhhchhHHhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP---------G---------FNQPSLLKVTKQSLAQTFPEIKEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g---------~~~~~l~~~~~~~l~~~~p~~~~~LSg 269 (391)
.+... ...+.++++++....+ +.++- + .....+..+++....+..+. .|||
T Consensus 74 ~~~~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSg 146 (506)
T PRK13549 74 SNIRD----TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG---NLGL 146 (506)
T ss_pred CCHHH----HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh---hCCH
Confidence 22110 0123466666652211 11100 0 01123444555555566666 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 Gqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 192 (506)
T PRK13549 147 GQQQLVEIAKAL-NKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192 (506)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 999999999999 9999999999 899999999999998643
No 210
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=3.5e-21 Score=180.16 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.++++.++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 79 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECCCchH
Confidence 346888999964 36999999999 99999999999999999999999999 999999999997764
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCCcc-----cc-------------hHHHHhC--ChhHHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG-----FN-------------QPSLLKV--TKQSLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg-----~~-------------~~~l~~~--~~~~l~~~~p~~~~~L 267 (391)
..... ...+.++++++.... .+.++-. .. ...+..+ ++....+..+. .|
T Consensus 80 ~~~~~-----~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---~L 151 (226)
T cd03248 80 QYEHK-----YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGS---QL 151 (226)
T ss_pred HcCHH-----HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCC---cC
Confidence 33211 122446666655211 1111100 00 0111122 23333344444 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||+|||+||+|+ +.+|+++|+| |+.....+.+++.++..
T Consensus 152 SgG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 198 (226)
T cd03248 152 SGGQKQRVAIARAL-IRNPQVLILDEATSALDAESEQQVQQALYDWPE 198 (226)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999 9999999999 88899999999988753
No 211
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=6.2e-21 Score=173.12 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=104.0
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++| ++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++......
T Consensus 7 ~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 7 VRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR------------PPASGEITLDGKPVTRRSPR 70 (182)
T ss_pred EeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccCHH
Confidence 45667777 899999999 89999999999999999999999999 99999999999877543211
Q ss_pred cCCCcceeeeEEEEeccCC-CcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 216 SGRGKHTTRHVSLLPLSGG-GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~-~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
. ...+.+++++++.. ..+.... ...+... ++. .||+||+||++||+++ +.+|+++++|
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~~~~----------t~~e~l~-~~~---~LS~G~~qrl~la~al-~~~p~llllDEP 131 (182)
T cd03215 71 D----AIRAGIAYVPEDRKREGLVLDL----------SVAENIA-LSS---LLSGGNQQKVVLARWL-ARDPRVLILDEP 131 (182)
T ss_pred H----HHhCCeEEecCCcccCcccCCC----------cHHHHHH-HHh---hcCHHHHHHHHHHHHH-ccCCCEEEECCC
Confidence 1 02345777776521 0111110 1111000 111 2999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.+++.++..+
T Consensus 132 ~~~LD~~~~~~l~~~l~~~~~~ 153 (182)
T cd03215 132 TRGVDVGAKAEIYRLIRELADA 153 (182)
T ss_pred CcCCCHHHHHHHHHHHHHHHHC
Confidence 889999999999988643
No 212
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=3e-21 Score=176.99 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=107.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++...++ ++|++ +|++++|+|+||||||||+++|+|+. +|++|+|+++|.++.....
T Consensus 3 ~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 69 (195)
T PRK13541 3 SLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM------------QPSSGNIYYKNCNINNIAK 69 (195)
T ss_pred EEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCcccChhhh
Confidence 3578889997766665 99999 89999999999999999999999999 9999999999976643210
Q ss_pred ccCCCcceeeeEEEEeccCC----CcccCCc----------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGG----GYLADTP----------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~----~~l~Dtp----------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
..+.++++... ..+.++. ......+..+++.+..+..+. .||+||+||++||+|
T Consensus 70 ---------~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~~rl~la~a 137 (195)
T PRK13541 70 ---------PYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCY---SLSSGMQKIVAIARL 137 (195)
T ss_pred ---------hhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChh---hCCHHHHHHHHHHHH
Confidence 12344443211 1111111 011222344455555566666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+ +.+|+++++| |+.....+.+++.+..
T Consensus 138 l-~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 138 I-ACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred H-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9 9999999999 8888888888887643
No 213
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7e-21 Score=181.20 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+.... -..|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 8 EARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI-------PGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccC-------CCCCCceEEEECCEEcccccc
Confidence 4578899998878999999999 89999999999999999999999986100 002689999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCChh----HHhhhchhHHhhcCccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTKQ----SLAQTFPEIKEMLKANE 271 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~~----~l~~~~p~~~~~LSgGq 271 (391)
.. ....+.++++++....+ +.++- +.. ...+..+++. ...+..+. .|||||
T Consensus 81 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgGq 154 (253)
T PRK14242 81 DV---VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL---GLSGGQ 154 (253)
T ss_pred CH---HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcc---cCCHHH
Confidence 00 01235678887764322 11110 000 0011222221 12233444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 155 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14242 155 QQRLCIARAL-AVEPEVLLMDEPASALDPIATQKIEELIHELKA 197 (253)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 88999999999999854
No 214
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=5.2e-21 Score=184.92 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=117.5
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++| +...+|+++||.| +|++++|+||||+|||||+++|+|+. + ++|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~------------~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEhhh
Confidence 3468899999 4457999999999 89999999999999999999999998 6 78999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC--------cccchHHHHhCChhHHhhhchhH--------HhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT--------PGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt--------pg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~ 272 (391)
++... ..+.+++++++...+ +.++ .......+..+++....+.+|.- ...||+||+
T Consensus 70 ~~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 70 VPLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred CCHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 43221 234577777663221 1111 11112334566777777777761 012999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |+.....+.++|.++.
T Consensus 145 qrl~LaRal-l~~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 145 QLMCLARSV-LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHH-hcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8888888888888764
No 215
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=1.5e-21 Score=207.15 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=122.8
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|.+ ..+++++|+++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY------------PLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEhhhC
Confidence 557889999964 56899999999 99999999999999999999999999 99999999999988766
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCCcc----cc----hHHHHhCChhHHhhhchh--------HHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPG----FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg----~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~q 273 (391)
+... ..+++++++|+. .+.+.++-. .. ...+..+++.+....+|. ....|||||+|
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 5432 457788888873 233333211 11 223444555555555543 22369999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||||+ +.+|+++|+| |++..+.+.+.+.++..
T Consensus 484 RialARaL-l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~ 524 (592)
T PRK10790 484 LLALARVL-VQTPQILILDEATANIDSGTEQAIQQALAAVRE 524 (592)
T ss_pred HHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 88899999888887653
No 216
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.3e-21 Score=199.49 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=114.9
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+...
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY------------QKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCEECCCCCHHH
Confidence 57888998888999999999 99999999999999999999999999 999999999998764322110
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCCc--------c----------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADTP--------G----------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g----------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+.++++++....+ +.++- + .....+..+++....+..+. .|||||+||
T Consensus 70 ~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qr 142 (491)
T PRK10982 70 A----LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA---TLSVSQMQM 142 (491)
T ss_pred H----HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh---hCCHHHHHH
Confidence 0 123466666653211 11110 0 01112334444444556666 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 143 v~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 183 (491)
T PRK10982 143 IEIAKAF-SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 183 (491)
T ss_pred HHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 889999999999998643
No 217
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-21 Score=186.25 Aligned_cols=161 Identities=15% Similarity=0.177 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++....
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP-------GARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc-------CCCcceEEEECCEeccccc
Confidence 34688999998888999999999 999999999999999999999999982100 0137999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~LSg 269 (391)
... ....+.++++++....+ +.++- +. . ...+..+++ ....+..+. .|||
T Consensus 78 ~~~---~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~ 151 (258)
T PRK14241 78 VDP---VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG---GLSG 151 (258)
T ss_pred cCh---HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc---cCCH
Confidence 100 01235577777753221 11110 00 0 011222232 123344444 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 152 G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (258)
T PRK14241 152 GQQQRLCIARAI-AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ 196 (258)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999853
No 218
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=4.4e-21 Score=197.34 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=123.5
Q ss_pred CCeeEEEEcCCc----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~~----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|... .++++|||++ +||++||||.|||||||+.++|+|+..... ..++|+|.|+|.++.
T Consensus 7 ~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~--------~~~~G~I~~~g~dl~ 78 (539)
T COG1123 7 EVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG--------RITSGEVILDGRDLL 78 (539)
T ss_pred EEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--------cccceEEEECCcchh
Confidence 357788887543 5899999999 999999999999999999999999983210 235899999999887
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccC---------------Ccc----c---chHHHHhCChhHHh--hhchhHHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLAD---------------TPG----F---NQPSLLKVTKQSLA--QTFPEIKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~D---------------tpg----~---~~~~l~~~~~~~l~--~~~p~~~~~ 266 (391)
..+.... ....-+.++++||+.-..+.. ... . ....+..+++.+-. +.||+ +
T Consensus 79 ~l~~~~~-r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh---e 154 (539)
T COG1123 79 GLSEREM-RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH---Q 154 (539)
T ss_pred cCCHHHH-HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc---c
Confidence 7665422 111236799999983211110 000 0 11223455554333 45999 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
|||||+||+.||+|+ +.+|+++|+| |+....+++++|+++..+...
T Consensus 155 LSGG~rQRv~iAmAL-a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~ 206 (539)
T COG1123 155 LSGGMRQRVMIAMAL-ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206 (539)
T ss_pred cCchHHHHHHHHHHH-hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999 9999999999 889999999999999977655
No 219
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=9e-21 Score=179.70 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=108.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. .+|++|+|.++|.++.....
T Consensus 3 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 3 SIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED----------YEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred EEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc----------CCCCceEEEECCCccccCCH
Confidence 3578899998878999999999 899999999999999999999999940 05899999999977644322
Q ss_pred ccCCCcceeeeEEEEeccCCCcc-----------cCCc----c---cc--------hHHHHhCCh-hHHhhhchhHHhhc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYL-----------ADTP----G---FN--------QPSLLKVTK-QSLAQTFPEIKEML 267 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l-----------~Dtp----g---~~--------~~~l~~~~~-~~l~~~~p~~~~~L 267 (391)
... ....++++++....+. .... . .. ...+..+++ .++.+..+ ...|
T Consensus 73 ~~~----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~L 146 (248)
T PRK09580 73 EDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGF 146 (248)
T ss_pred HHH----hhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCC
Confidence 110 1134556555421110 0000 0 00 001111111 11111111 1269
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||||+||++||+|+ +.+|+++|+| |+.....+.+++.+++..
T Consensus 147 S~G~~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (248)
T PRK09580 147 SGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKIVADGVNSLRDG 194 (248)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999 889999999999988654
No 220
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-21 Score=184.71 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|+++|.++....
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcC-------CCCceEEEECCEeccccc
Confidence 34678899998888999999999 9999999999999999999999999821000 136999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++- +. . ...+..+++ ....+..+. .||||
T Consensus 81 ~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgG 154 (254)
T PRK14273 81 FD---ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL---SLSGG 154 (254)
T ss_pred cc---HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc---cCCHH
Confidence 00 001235677877763321 11110 00 0 011112222 122344455 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 155 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (254)
T PRK14273 155 QQQRLCIARTL-AIEPNVILMDEPTSALDPISTGKIEELIINLKE 198 (254)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999999853
No 221
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-21 Score=185.78 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++++.|++..+++++||++ +|++++|+||||||||||+++|+|+..+. ...|++|+|.++|.++....
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI-------KNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------cCCCcceEEEECCEEccccc
Confidence 34578888998878999999999 99999999999999999999999998210 00148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc--------hHHHHhCCh----hHHhhhchhHHhhcCccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN--------QPSLLKVTK----QSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~--------~~~l~~~~~----~~l~~~~p~~~~~LSgGq 271 (391)
... ....+.++++++....+ +.++- +.. ...+..+++ ....+..+. .|||||
T Consensus 86 ~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgG~ 159 (258)
T PRK14268 86 VDV---VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPAL---SLSGGQ 159 (258)
T ss_pred chH---HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh---hCCHHH
Confidence 100 01234577777763321 11111 010 011222222 122334444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 160 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 202 (258)
T PRK14268 160 QQRLCIARTL-AVKPKIILFDEPTSALDPISTARIEDLIMNLKK 202 (258)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh
Confidence 9999999999 9999999999 88999999999999854
No 222
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=1.3e-20 Score=178.02 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=108.3
Q ss_pred EEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCc
Q 016339 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
.+|+...++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~~~~------ 90 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL------------QPTSGEVRVAGLVPWKRRK------ 90 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEccccch------
Confidence 4567778999999999 99999999999999999999999999 9999999999875432111
Q ss_pred ceeeeEEEEe-ccCCCc----ccCC-------cccc--------hHHHHhCChhHHhhhchhHHhhcCcccccccccccc
Q 016339 221 HTTRHVSLLP-LSGGGY----LADT-------PGFN--------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 221 ~ttr~i~~v~-~~~~~~----l~Dt-------pg~~--------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
...+.+++++ +....+ +.++ .++. ...+..+++.+..+..+. .|||||+||++||+|
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~~qrl~la~a 167 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR---QLSLGQRMRAEIAAA 167 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHH
Confidence 1234456654 221111 1111 0110 112334455555566666 899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 168 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 168 L-LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred H-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9 9999999999 889999999999998653
No 223
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.82 E-value=3.7e-21 Score=203.69 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.+ ..+++++++++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY------------DIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCceEEECCEEhhh
Confidence 557889999964 56999999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cc-cchH----HHHhCChhHHhhhchhH--------HhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PG-FNQP----SLLKVTKQSLAQTFPEI--------KEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg-~~~~----~l~~~~~~~l~~~~p~~--------~~~LSgG 270 (391)
++... ..+.+++++|+. .+.+.++ |. ..+. .+..+++.+....+|.- ...||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 65432 456788888873 3333222 11 2222 23344555554444431 2369999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |++....+.+.+.++.+
T Consensus 485 qrQRi~LARal-l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~ 528 (582)
T PRK11176 485 QRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred HHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88888888888887643
No 224
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=8.6e-22 Score=182.91 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=119.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-----
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV----- 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v----- 209 (391)
.++.++++|++..++++|||.+ +|++++++|||||||||++++|+|++ .|++|+|.++|.++
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll------------e~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL------------EPTEGEITWNGGPLSQEIK 71 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC------------CccCceEEEcCcchhhhhh
Confidence 4578999999999999999999 89999999999999999999999999 99999999999654
Q ss_pred ---cccccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 210 ---GEVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 210 ---~~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
+++++..++++.+| ..+.|+.--.|....+.......++..+++........+ .||.|++|++.|-.++ +|
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk---~LSKGnqQKIQfisav-iH 147 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK---ELSKGNQQKIQFISAV-IH 147 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHH---HhhhhhhHHHHHHHHH-hc
Confidence 44555444444443 111111100011111111111223444554444444444 9999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|+++|+| ||-+.+.+.+.+.+++++..+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE
Confidence 99999999 999999999999999877655
No 225
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.82 E-value=4.1e-21 Score=207.95 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=121.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|+ +..+|+++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~------------~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF------------QARSGEILLNGFSLKDI 541 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCcEEEECCEEHHHc
Confidence 55789999996 457999999999 89999999999999999999999999 99999999999998777
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC------cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT------PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt------pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
+... .++++++++|+. .+.+.|+ |...+. .+...++.+....+|. -...|||||
T Consensus 542 ~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 542 DRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred CHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 6543 457788998873 2333332 222222 2333455554444442 224699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++
T Consensus 617 rQRialARal-l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 617 KQRIALARAL-LTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHH-hhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 788888888888764
No 226
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.82 E-value=3.9e-21 Score=207.65 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=124.3
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.+++++++|++ ..+|+++|+++ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~------------~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY------------QPTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEhh
Confidence 3567899999964 46899999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.++... ..+++++++|+. .+.+.++ |...+. .+...++.+....+|. ....||||
T Consensus 531 ~~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 531 QIDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hCCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 766532 457788998873 3333333 222222 2344555555555553 12379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |++....+.+.+.++..
T Consensus 606 QrQRlalARal-l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~ 649 (694)
T TIGR03375 606 QRQAVALARAL-LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649 (694)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88999999998887753
No 227
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=7e-21 Score=175.53 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred CeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
++++.++|++. .+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~------------~~~~G~i~~~g-~i~ 69 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL------------EKLSGSVSVPG-SIA 69 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCCeEEEcC-EEE
Confidence 57889999764 6999999999 89999999999999999999999999 99999999998 677
Q ss_pred ccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaral 281 (391)
.+++.+.....+. .++.+ .. .. . .......+..+++......+| .....||+||+||++||+|+
T Consensus 70 ~~~q~~~l~~~t~~enl~~-~~----~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 70 YVSQEPWIQNGTIRENILF-GK----PF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEecCchhccCcHHHHhcc-CC----Cc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 7777654332221 22222 10 00 0 101111122223332222222 11138999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHH-HHHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQ-LLDEIR 308 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~-ll~el~ 308 (391)
+.+|+++++| |+...+.+.+ ++.++.
T Consensus 143 -~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~ 175 (204)
T cd03250 143 -YSDADIYLLDDPLSAVDAHVGRHIFENCILGLL 175 (204)
T ss_pred -hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 7777777766 455543
No 228
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.82 E-value=5.7e-21 Score=202.68 Aligned_cols=156 Identities=22% Similarity=0.342 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+++++++.+ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++..+
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~------------~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF------------DPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEEhhhC
Confidence 557889999964 56899999999 99999999999999999999999999 99999999999988766
Q ss_pred ccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+++++++|+. .+.+.|+ |...+. .+..+++.+....+|. -...|||||+
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 5432 456788998873 3333333 333332 2334455554444442 1126999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++|||++ +.+|+++|+| |+.....+++.+.++.
T Consensus 478 QRialARal-l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~ 518 (588)
T PRK13657 478 QRLAIARAL-LKDPPILILDEATSALDVETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889998888887764
No 229
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.7e-21 Score=182.35 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=113.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+.... ...|++|+|.++|.++...+
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLI-------PSARSEGEILYEGLNILDSN 94 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccccc-------CCCCCceEEEECCEEccccc
Confidence 45688999998888999999999 99999999999999999999999985100 00168999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++- +. ....+..+++ ....+..+. .||||
T Consensus 95 ~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSgG 168 (268)
T PRK14248 95 INV---VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL---SLSGG 168 (268)
T ss_pred ccH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc---cCCHH
Confidence 110 01234677877763321 11110 00 0001112222 123344455 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 169 q~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 169 QQQRLCIARTL-AMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999999854
No 230
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.82 E-value=7.9e-21 Score=182.84 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=115.8
Q ss_pred CCeeEEEEcC---------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 136 GYEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~---------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
.++++.++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++
T Consensus 5 ~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~sG~i~~~ 72 (268)
T PRK10419 5 NVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE------------SPSQGNVSWR 72 (268)
T ss_pred EEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEC
Confidence 3578888887 367999999999 99999999999999999999999999 8999999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCcc------cCCc--------c--------cchHHHHhCChh-HHhhhchh
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTP--------G--------FNQPSLLKVTKQ-SLAQTFPE 262 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l------~Dtp--------g--------~~~~~l~~~~~~-~l~~~~p~ 262 (391)
|.++....... .....+.+++++++....+ .++- + .....+..+++. .+.+..+.
T Consensus 73 g~~~~~~~~~~--~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 150 (268)
T PRK10419 73 GEPLAKLNRAQ--RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP 150 (268)
T ss_pred CEeccccChhH--HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCc
Confidence 98765432210 0012345777777632111 1100 0 011123334443 34555565
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 151 ---~LS~Ge~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 151 ---QLSGGQLQRVCLARAL-AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred ---cCChHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 9999999999 888999999999998764
No 231
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.1e-20 Score=177.90 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=110.0
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|+ +..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY------------DVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEhhhCCH
Confidence 578888995 466999999999 99999999999999999999999999 9999999999987654322
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCcccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr 274 (391)
.. ..+.++++++....+ +.++ +... ...+...+..+....+|. -...||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 71 DS-----LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HH-----HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 11 123456665542211 1110 0001 111122233333222221 012899999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 146 l~la~aL-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 185 (236)
T cd03253 146 VAIARAI-LKNPPILLLDEATSALDTHTEREIQAALRDVSK 185 (236)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999 88899999999988764
No 232
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=8.4e-21 Score=175.40 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|+. ..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL------------EAEEGKIEIDGIDIST 74 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEhHH
Confidence 456889999975 36999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCCc----ccchHH-HHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTP----GFNQPS-LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp----g~~~~~-l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
.+... ..+.+++++++... .+.++- .+.... ...++ .+..+. .|||||+||++||+|+ +
T Consensus 75 ~~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~---~LS~G~~qrv~laral-~ 141 (207)
T cd03369 75 IPLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGL---NLSQGQRQLLCLARAL-L 141 (207)
T ss_pred CCHHH-----HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCC---cCCHHHHHHHHHHHHH-h
Confidence 32211 23457777776321 111110 011110 11111 233444 8999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.+|+++|+| |+.....+.++|.++.
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEF 172 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999 7888889999998874
No 233
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=8.4e-21 Score=170.02 Aligned_cols=127 Identities=28% Similarity=0.333 Sum_probs=99.0
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|. +..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~------- 63 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW------------PWGSGRIGMPEG------- 63 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCC-------
Confidence 477888885 457999999999 99999999999999999999999999 899999998652
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
+.+++++++.. +. +.-....+. +. .+. .|||||+||++||+|+ +.+|+++++|
T Consensus 64 ---------~~i~~~~q~~~--~~--~~tv~~nl~-~~-------~~~---~LS~G~~~rv~laral-~~~p~~lllDEP 118 (166)
T cd03223 64 ---------EDLLFLPQRPY--LP--LGTLREQLI-YP-------WDD---VLSGGEQQRLAFARLL-LHKPKFVFLDEA 118 (166)
T ss_pred ---------ceEEEECCCCc--cc--cccHHHHhh-cc-------CCC---CCCHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 34556655422 10 111111111 00 344 8999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el 307 (391)
|+.....+.+++.++
T Consensus 119 t~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 119 TSALDEESEDRLYQLLKEL 137 (166)
T ss_pred ccccCHHHHHHHHHHHHHh
Confidence 888888888888775
No 234
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7e-21 Score=183.05 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=114.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|+++|.++....
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG-------CRVTGKITLDGEDIYDPR 92 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEECcccc
Confidence 45688999998888999999999 9999999999999999999999999821000 148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------cc----------chHHHHhCChhH----HhhhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----------NQPSLLKVTKQS----LAQTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----------~~~~l~~~~~~~----l~~~~p~~~~~LSg 269 (391)
.... ...+.++++++....+ +.++- +. ....+..+++.. ..+..+. .|||
T Consensus 93 ~~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LSg 166 (267)
T PRK14235 93 LDVV---ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGT---GLSG 166 (267)
T ss_pred cchH---HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcc---cCCH
Confidence 1100 1234577777763321 11110 00 011122233321 2233344 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 167 Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~ 211 (267)
T PRK14235 167 GQQQRLCIARAI-AVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211 (267)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999864
No 235
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=4.6e-21 Score=210.34 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=124.4
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+.|++|.++|... .+|+++||.+ .|++++|||||||||||++++|.+++ +|++|+|.++|.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy------------dP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY------------DPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCceEEEcCccc
Confidence 45689999999765 5899999999 89999999999999999999999999 99999999999998
Q ss_pred cccccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHH----HhCChhHHhhhchhHH--------hhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSL----LKVTKQSLAQTFPEIK--------EMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l----~~~~~~~l~~~~p~~~--------~~LSg 269 (391)
..+..+. .+..++++.|+ +...+.++ |......+ ......++...+|... .+|||
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 7665432 45677888887 33333333 33332222 2223344444444422 37999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|||||++|||++ +.+|+++++| |++....+.+.|+......
T Consensus 493 GQKQRIAIARal-v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 493 GQKQRIAIARAL-VRNPKILLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred HHHHHHHHHHHH-HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 999999999999 9999999999 9999999999998876543
No 236
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.82 E-value=3.7e-21 Score=181.00 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=101.9
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...... ..+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~----------~~~ 58 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA------------QPTSGGVILEGKQITEPGPD----------RMV 58 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCChh----------heE
Confidence 46788999 89999999999999999999999999 99999999999876432111 123
Q ss_pred EeccCCC----cccCC---------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 229 LPLSGGG----YLADT---------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 229 v~~~~~~----~l~Dt---------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
+++.... .+.++ ++. ....+..+++....+..+. .|||||+||++||+|+ +.+|+
T Consensus 59 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgG~~qrv~la~al-~~~p~ 134 (230)
T TIGR01184 59 VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG---QLSGGMKQRVAIARAL-SIRPK 134 (230)
T ss_pred EecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChh---hCCHHHHHHHHHHHHH-HcCCC
Confidence 3333211 11111 011 1223445566666677777 9999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.++|.++.++
T Consensus 135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 135 VLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 99999 889999999999998654
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.9e-21 Score=198.05 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY------------QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred EEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCH
Confidence 4578899998888999999999 89999999999999999999999999 9999999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc---------cc---------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP---------GF---------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g~---------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.. ...+.++++++....+ +.++- +. ....+..+++....+..+. .|||||+
T Consensus 74 ~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~ 146 (501)
T PRK11288 74 TA----ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK---YLSIGQR 146 (501)
T ss_pred HH----HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh---hCCHHHH
Confidence 10 1224567777653211 11110 10 1112334444444455666 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+++ +.+|+++|+| |+.....+.++|.++.++
T Consensus 147 qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (501)
T PRK11288 147 QMVEIAKAL-ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE 189 (501)
T ss_pred HHHHHHHHH-HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999 9999999999 889999999999998643
No 238
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=1.5e-20 Score=177.33 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=109.1
Q ss_pred CeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
++++.++|++ ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY------------DPTSGEILLDGVDIRDL 70 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC------------CCCCCEEEECCEehhhc
Confidence 4778888864 35899999999 89999999999999999999999999 99999999999776433
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.++++++.... .+.++ +.... ..+...++.++.+.+|. ....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 71 NLRW-----LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred CHHH-----HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 2211 12346666655211 11111 00000 11112233333222211 1138999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+.....+.++|.++.
T Consensus 146 qrv~la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 186 (238)
T cd03249 146 QRIAIARAL-LRNPKILLLDEATSALDAESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 8899999999999875
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.9e-21 Score=187.63 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=114.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++...+.
T Consensus 41 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 41 EARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLID-------AARVEGELTFRGKNVYDADV 113 (285)
T ss_pred EEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc-------CCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 999999999999999999999999981000 01689999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------c-------chHHHHhCCh----hHHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------F-------NQPSLLKVTK----QSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~-------~~~~l~~~~~----~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++.. . ....+..+++ ....+..+. .|||||+|
T Consensus 114 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LSgGe~q 187 (285)
T PRK14254 114 DP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGL---DLSGGQQQ 187 (285)
T ss_pred ch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcc---cCCHHHHH
Confidence 11 01235677887763321 111100 0 0111222332 123445555 89999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 188 rv~LAraL-~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~ 228 (285)
T PRK14254 188 RLCIARAI-APDPEVILMDEPASALDPVATSKIEDLIEELAE 228 (285)
T ss_pred HHHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999865
No 240
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.82 E-value=6.8e-21 Score=201.05 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=122.4
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.+ ..+++++|+.+ +|++++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~------------~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY------------EPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEeHHh
Confidence 557899999964 46899999999 89999999999999999999999999 9999999999998876
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----c-ccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----P-GFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----p-g~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
++... ....+++++|+. .+.+.++ + ...+. .+..+++.+....+|. ....||||
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 65432 456788888873 3333332 1 23222 3445566665555542 22469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||++||||+ +.+|+++|+| |....+.+.+.|.++.
T Consensus 474 qrQRiaLARal-l~~~~illLDEpts~LD~~~~~~i~~~L~~~~ 516 (571)
T TIGR02203 474 QRQRLAIARAL-LKDAPILILDEATSALDNESERLVQAALERLM 516 (571)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 7888888888887764
No 241
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.82 E-value=1.7e-20 Score=164.38 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=95.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~~~-------- 62 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL------------EPDEGIVTWGST-------- 62 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCe--------
Confidence 467888998778999999999 89999999999999999999999999 999999999873
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
..++++++ ||+||+||++||+|+ +.+|+++++|
T Consensus 63 --------~~i~~~~~-----------------------------------lS~G~~~rv~laral-~~~p~illlDEP~ 98 (144)
T cd03221 63 --------VKIGYFEQ-----------------------------------LSGGEKMRLALAKLL-LENPNLLLLDEPT 98 (144)
T ss_pred --------EEEEEEcc-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 23445443 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el 307 (391)
|+.....+.+++.++
T Consensus 99 ~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 99 NHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 788888888888775
No 242
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.6e-21 Score=181.88 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=112.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++...+.
T Consensus 6 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVP-------SARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCC-------CCCCceEEEECCEEcccccC
Confidence 4578999998888999999999 999999999999999999999999971000 01368999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-c--------hHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-N--------QPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~--------~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
.. ....+.++++++....+ +.++- +. . ...+..+++. ...+..+. .||||
T Consensus 79 ~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 152 (252)
T PRK14256 79 DP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM---ELSGG 152 (252)
T ss_pred Ch---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC---cCCHH
Confidence 11 01245677887763321 11110 10 0 1111222321 12233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 153 ~~qrl~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14256 153 QQQRLCIARTI-AVKPEVILMDEPASALDPISTLKIEELIEELKE 196 (252)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88899999999999864
No 243
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=1.4e-20 Score=179.95 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=113.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++ ..++++++|.+ +|++++|+|+||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV------------DIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------CCCCCeEEECCEEhhh
Confidence 456889999976 56999999999 99999999999999999999999999 9999999999987654
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC--cc--cc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT--PG--FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt--pg--~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
.+... ..+.++++++....+ +.++ +. .. ...+...+.....+.+|. ....||+||+
T Consensus 88 ~~~~~-----~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 88 LPLHT-----LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred CCHHH-----HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 33211 234566666653211 1111 10 01 111222334444444431 1137999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+.....+.+++.++.
T Consensus 163 qrl~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 203 (257)
T cd03288 163 QLFCLARAF-VRKSSILIMDEATASIDMATENILQKVVMTAF 203 (257)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 7888888889888764
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.1e-21 Score=183.70 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=111.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++.....
T Consensus 12 ~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 12 RTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIP-------GFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccC-------CCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 999999999999999999999999872100 01479999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-------hHHHHhCChh----HHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-------QPSLLKVTKQ----SLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-------~~~l~~~~~~----~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++- ++. ...+..+++. ...+..+. .|||||+|
T Consensus 85 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgGq~q 158 (264)
T PRK14243 85 DP---VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGL---SLSGGQQQ 158 (264)
T ss_pred Ch---HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcc---cCCHHHHH
Confidence 10 01234577777753211 11110 000 0011122221 12333444 79999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 159 rv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 199 (264)
T PRK14243 159 RLCIARAI-AVQPEVILMDEPCSALDPISTLRIEELMHELKE 199 (264)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999865
No 245
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-20 Score=183.18 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=113.3
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC--CCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~--p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+... .+ |++|+|.++|.++..
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~---------~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL---------IPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---------CCCCCCceEEEECCEEhhh
Confidence 34678899998778999999999 9999999999999999999999998510 01 589999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++- +.. ...+..+++ .+..+..+. .||
T Consensus 111 ~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS 184 (286)
T PRK14275 111 KFTDE---VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---GLS 184 (286)
T ss_pred cccch---HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChh---hCC
Confidence 21110 01234577777763321 11110 000 011122222 233444555 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 185 gGq~qrv~LAraL-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 230 (286)
T PRK14275 185 GGQQQRLCVARTL-AVEPEILLLDEPTSALDPKATAKIEDLIQELRG 230 (286)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 88999999999998864
No 246
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=200.48 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=119.2
Q ss_pred CeeEEEEcCC-----------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 137 ~~~v~~s~~~-----------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
+++++++|+. ..++++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|++
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~------------~p~~G~I~~ 383 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV------------ESQGGEIIF 383 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCcEEEE
Confidence 4567888852 36899999999 99999999999999999999999999 999999999
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCC--Cc----ccCC-------ccc---------chHHHHhCChh-HHhhhch
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--GY----LADT-------PGF---------NQPSLLKVTKQ-SLAQTFP 261 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~~----l~Dt-------pg~---------~~~~l~~~~~~-~l~~~~p 261 (391)
+|.++...+... .+...+.+++++|+.. .+ +.++ .+. ....+..+++. ...+.+|
T Consensus 384 ~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 384 NGQRIDTLSPGK--LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred CCEECCcCCHHH--HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 998775433210 0012346888888631 11 1111 011 11234456663 5677788
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
. +|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 462 ~---~LSgGqrQRv~iAraL-~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 462 H---EFSGGQRQRICIARAL-ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred c---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 8 9999999999999999 9999999999 899999999999999765
No 247
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.3e-21 Score=181.33 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~v 209 (391)
.++++.++|+...+++++||.+ +|++++|+||||||||||+++|+|+. + |++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 6 SAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN------------DDIENIKITGEIKFEGQNI 73 (251)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------ccccCCCcceEEEECCEEc
Confidence 4578999998888999999999 89999999999999999999999998 4 4799999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
....... ....+.++++++....+ +.++- +.. ...+..+++ ....+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 147 (251)
T PRK14251 74 YGSKMDL---VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQ---A 147 (251)
T ss_pred ccccchH---HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChh---h
Confidence 4311100 01234577777663321 11110 000 011222232 122344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 148 LS~Gq~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 195 (251)
T PRK14251 148 FSGGQQQRICIARAL-AVRPKVVLLDEPTSALDPISSSEIEETLMELKH 195 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc
Confidence 999999999999999 9999999999 88999999999998854
No 248
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.9e-21 Score=180.76 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=113.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+. +| ++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 6 ESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN------------DLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred EEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CcccCCCCccEEEECCEec
Confidence 3578889998888999999999 99999999999999999999999997 43 799999999877
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
...+... ....+.+++++++...+ +.++. +. . ...+..+++ ....+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 147 (251)
T PRK14270 74 YDKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL---K 147 (251)
T ss_pred ccccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc---c
Confidence 4321110 01234577777763321 11110 00 0 011222222 122344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 148 LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 148 LSGGQQQRLCIARTI-AVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 88999999999999865
No 249
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.81 E-value=7.4e-21 Score=178.19 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=110.6
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC---CCCCcceecCcc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~---p~~G~I~~~g~~ 208 (391)
++++.+.|.+ ..++++++|++ +|++++|+||||||||||+++|+|+. + |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~------------~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV------------EGGGTTSGQILFNGQP 73 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc------------CCCCCCceEEEECCEE
Confidence 5677777754 57999999999 89999999999999999999999998 6 899999999976
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc----ccCC---------cc-cc--------hH-HHHhCChhHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADT---------PG-FN--------QP-SLLKVTKQSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt---------pg-~~--------~~-~l~~~~~~~l~~~~p~~~~ 265 (391)
+... ...+.++++++....+ +.++ +. .. .. .+..+++..+.+..+.
T Consensus 74 ~~~~--------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (226)
T cd03234 74 RKPD--------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK--- 142 (226)
T ss_pred CChH--------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc---
Confidence 5310 1234566666553211 1110 00 00 01 2223333344444455
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+||++||+|+ +.+|+++|+| |+.....+.+++.++.+.
T Consensus 143 ~LS~G~~qrl~laral-~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~ 192 (226)
T cd03234 143 GISGGERRRVSIAVQL-LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192 (226)
T ss_pred CcCHHHHHHHHHHHHH-HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 8999999999999999 9999999999 889999999999998653
No 250
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.1e-20 Score=171.20 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|++ ..+++++||++ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.++.
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----------~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT----------AGVITGEILINGRPLD 74 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc----------CCCcceEEEECCEehH
Confidence 35788889964 56999999999 899999999999999999999999751 0489999999998764
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
. ...+.++++++....+ ...... ..+. .... ...|||||+||++||+|+ +.+|++++
T Consensus 75 ---~------~~~~~i~~~~q~~~~~--~~~tv~-~~l~---~~~~-------~~~LSgGe~qrv~la~al-~~~p~vll 131 (192)
T cd03232 75 ---K------NFQRSTGYVEQQDVHS--PNLTVR-EALR---FSAL-------LRGLSVEQRKRLTIGVEL-AAKPSILF 131 (192)
T ss_pred ---H------HhhhceEEecccCccc--cCCcHH-HHHH---HHHH-------HhcCCHHHhHHHHHHHHH-hcCCcEEE
Confidence 1 1234577777653211 110000 1111 0000 018999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~~~ 310 (391)
+| |+.....+.+++.++.+.
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~~ 157 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADS 157 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHc
Confidence 99 889999999999987653
No 251
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-20 Score=180.81 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=113.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++....
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-------YRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCC-------CCCceEEEECCEEccccc
Confidence 45688999999889999999999 9999999999999999999999999821100 157999999997764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCcc--------cch--------HHHHhCChhH----HhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTPG--------FNQ--------PSLLKVTKQS----LAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg--------~~~--------~~l~~~~~~~----l~~~~p~~~~~LSgG 270 (391)
.. ......++++++....+ +.++.. ... ..+..+++.. ..+..+. .||||
T Consensus 95 ~~----~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~---~LSgG 167 (276)
T PRK14271 95 DV----LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF---RLSGG 167 (276)
T ss_pred hh----HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc---cCCHH
Confidence 11 01234577777653321 111100 000 1112223221 1233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 168 q~qrl~LAral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 211 (276)
T PRK14271 168 QQQLLCLARTL-AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211 (276)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999865
No 252
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=5.4e-21 Score=200.09 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=115.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---ccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~~v 212 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+.. +.|++|+|.+++. .++.+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~----------~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ----------YEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc----------CCCCceEEEEecccccccccc
Confidence 478899998888999999999 899999999999999999999999850 0488999998631 11111
Q ss_pred cccc---------------------CCC----cceeeeEEEEecc-CCCc----ccCC-------ccc--------chHH
Q 016339 213 STKS---------------------GRG----KHTTRHVSLLPLS-GGGY----LADT-------PGF--------NQPS 247 (391)
Q Consensus 213 ~~~~---------------------~~~----~~ttr~i~~v~~~-~~~~----l~Dt-------pg~--------~~~~ 247 (391)
++.. ... ....+.++++++. ...+ +.++ .+. ....
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1000 000 0112457788774 2211 1111 011 1123
Q ss_pred HHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 248 LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 248 l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+++.++.+..+. .|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 153 l~~~gl~~~~~~~~~---~LSgGq~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 153 IEMVQLSHRITHIAR---DLSGGEKQRVVLARQL-AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHcCChhhhhcCcc---cCCHHHHHHHHHHHHH-hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 445666666677777 9999999999999999 9999999999 899999999999998654
No 253
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=1.3e-20 Score=179.40 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=105.2
Q ss_pred chHHHhhcc------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 149 GLDSLLQRL------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 149 ~L~~ls~~i------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
.++++++.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|..++.+++........
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~------------~p~~G~i~~~g~~i~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL------------KPDEGDIEIELDTVSYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCceEEEecccccCCCCC
Confidence 445555555 69999999999999999999999999 999999999998787777654322111
Q ss_pred e--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CH
Q 016339 223 T--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 223 t--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~ 294 (391)
| .++.+.. .. ....+......+..+++....+..+. .|||||+||++||+|+ +.+|+++|+| |+
T Consensus 77 tv~e~l~~~~---~~-~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~qrv~iaraL-~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 77 TVRDLLSSIT---KD-FYTHPYFKTEIAKPLQIEQILDREVP---ELSGGELQRVAIAACL-SKDADIYLLDEPSAYLDV 148 (246)
T ss_pred CHHHHHHHHh---hh-ccccHHHHHHHHHHcCCHHHhhCChh---hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCH
Confidence 1 1110000 00 00111222344556777777777777 9999999999999999 9999999999 88
Q ss_pred HHHHHHHHHHHHHHHH
Q 016339 295 ERYQYYFQLLDEIRIR 310 (391)
Q Consensus 295 ~~~~~~~~ll~el~~~ 310 (391)
.....+.++|.++..+
T Consensus 149 ~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 149 EQRLMASKVIRRFAEN 164 (246)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 254
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.81 E-value=7.9e-21 Score=205.81 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=115.7
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.+ ..+|+++||++ +|++++|+||||||||||+|+|+|++ +|++|+|.++|.++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY------------QPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCEEEECCEEHH
Confidence 567899999964 46999999999 99999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
...... ..+++++++|+. .+.+.|+ +...+. .+...++.+....+|+ -...||||
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 665432 456788888873 3334333 222222 2334455555555443 12379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ 302 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ 302 (391)
|+||++||||+ +.+|+++|+| |++....+.+
T Consensus 622 QkQRlalARAL-l~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 622 QKQRIAIARAL-VRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEccccccCHHHHHHHHH
Confidence 99999999999 9999999999 6776666655
No 255
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.4e-20 Score=177.60 Aligned_cols=158 Identities=15% Similarity=0.243 Sum_probs=112.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCcccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~ 210 (391)
+.+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+ .| ++|+|.++|.++.
T Consensus 7 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL----------IPGCRITGDILYNGENIM 76 (253)
T ss_pred EEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC----------CCCCCcceEEEECCEEcc
Confidence 34678899998888999999999 8999999999999999999999998621 12 5899999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCCccc--------c--------hHHHHhCCh----hHHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGF--------N--------QPSLLKVTK----QSLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~--------~--------~~~l~~~~~----~~l~~~~p~~~~~L 267 (391)
..+... ....+.++++++....+ +.++-.+ . ...+..+++ ....+..+. .|
T Consensus 77 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~L 150 (253)
T PRK14261 77 DSGADV---VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL---SL 150 (253)
T ss_pred ccccch---hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh---hC
Confidence 432110 01235577777764322 1111000 0 001111111 112233344 89
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||+||++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 151 S~G~~qrv~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14261 151 SGGQQQRLCIARTL-AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197 (253)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999 88999999999998865
No 256
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.7e-20 Score=175.97 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..+++++||++ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++....
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP-------SVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccccc
Confidence 34688999998888999999999 999999999999999999999999861000 0126999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-----h----HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-----Q----PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-----~----~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ......++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 150 (250)
T PRK14240 77 IDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL---GLSGG 150 (250)
T ss_pred cch---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC---CCCHH
Confidence 000 01234577777763321 11110 000 0 00111221 122334444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 151 QQQRLCIARAL-AVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88999999999998853
No 257
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.9e-21 Score=182.34 Aligned_cols=161 Identities=13% Similarity=0.214 Sum_probs=114.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|+...+++++||++ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++....
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI-------ARVTGQILYRGIDINRKE 93 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC-------CCcceEEEECCEEccccc
Confidence 45688999998888999999999 9999999999999999999999999821000 158999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-h--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-Q--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 94 ~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS~G 167 (267)
T PRK14237 94 INV---YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSAL---TLSGG 167 (267)
T ss_pred CCh---HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcc---cCCHH
Confidence 100 01234677777763221 11110 110 0 01222222 123445555 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 168 ~~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 211 (267)
T PRK14237 168 QQQRLCIARAI-AVKPDILLMDEPASALDPISTMQLEETMFELKK 211 (267)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999998853
No 258
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.4e-20 Score=174.92 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=112.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~ 211 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+... .| ++|+|+++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL----------NPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc----------CCCCCccceEEECCEECcC
Confidence 4688999998888999999999 9999999999999999999999998510 35 58999999987642
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-hH--------HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-QP--------SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~~--------~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++- +.. .. .+..+++ ....+..+. .||
T Consensus 77 ~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS 150 (252)
T PRK14239 77 PRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL---GLS 150 (252)
T ss_pred cccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc---cCC
Confidence 21100 11234577877764321 11110 000 00 1112221 122344444 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14239 151 GGQQQRVCIARVL-ATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999 9999999999 88999999999999854
No 259
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.81 E-value=1.5e-20 Score=198.86 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=119.4
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.. ..+|+++|+++ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~------------~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY------------DPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCEEEECCEEHH
Confidence 557889999964 45899999999 99999999999999999999999999 999999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
...... ..+.+++++|+. .+.+.|+ |.... ..+..+++.+..+.+|. ....||||
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 654432 345678888873 3333322 22222 22334455555555542 22469999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|+||+++|||+ +.+|+++|+| |+...+.+.+.+.++.
T Consensus 481 q~Qrl~laRal-~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 481 QRQRIAIARAI-LKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred HHHHHHHHHHH-HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 7788888888887764
No 260
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=1.9e-20 Score=197.11 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=115.8
Q ss_pred hcCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+.+++++++|.+ ..+++++|+.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY------------QPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCC
Confidence 4567899999964 45999999999 89999999999999999999999999 9999999999998765
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-cccchH----HHHhCChhHHhhhchhH---HhhcCcccccccccccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-PGFNQP----SLLKVTKQSLAQTFPEI---KEMLKANEPAKCSFNNC 280 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-pg~~~~----~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~~iara 280 (391)
.+... ..+++++++|+. .+.+.++ +..... .+..++....... ++- ...|||||+||++||||
T Consensus 390 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 390 EQPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL-EDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred CCHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhc-cccCCCCCCCCHHHHHHHHHHHH
Confidence 54321 346788888873 2334343 111111 1223333222111 111 24799999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+ +.+|+++|+| |++....+.+.+.+..
T Consensus 464 l-~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 464 L-AEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred H-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 9 9999999999 7888888877776543
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=9.9e-21 Score=167.04 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=107.7
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
++...|+++||.+ +|++++|.||||||||||+++++.+. .|++|+++|.|.+++...... .+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li------------sp~~G~l~f~Ge~vs~~~pea-----~R 76 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDVSTLKPEA-----YR 76 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc------------CCCCceEEEcCccccccChHH-----HH
Confidence 5567899999999 99999999999999999999999999 999999999999887654421 22
Q ss_pred eeEEEEecc---CCCcccCCcccc-------------hHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCC
Q 016339 224 RHVSLLPLS---GGGYLADTPGFN-------------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (391)
Q Consensus 224 r~i~~v~~~---~~~~l~Dtpg~~-------------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP 286 (391)
..++|+.|. +++.+.|+--|- ...+..+++. .++.+... .|||||+||.+++|-| ..-|
T Consensus 77 q~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it---~lSGGE~QriAliR~L-q~~P 152 (223)
T COG4619 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNIT---ELSGGEKQRIALIRNL-QFMP 152 (223)
T ss_pred HHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhh---hccchHHHHHHHHHHh-hcCC
Confidence 333333332 334444442221 1123333332 23444444 8999999999999999 9999
Q ss_pred cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 287 GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++++| |+.+.+.+-+++...-..
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~ 182 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVRE 182 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhh
Confidence 999999 888889998888887643
No 262
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1.3e-20 Score=206.82 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=123.3
Q ss_pred hcCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 134 ~~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
++.|++|.|+|.+. .+++++|+.+ .|+++||||||||||||+|.+|-+++ +|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY------------dp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY------------DPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCCCeEEECCccc
Confidence 46689999999654 5899999999 89999999999999999999999999 99999999999998
Q ss_pred cccccccCCCcceeeeEEEEeccC---CCcccCCc--c---cchH----HHHhCChhHHhhhchh--------HHhhcCc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTP--G---FNQP----SLLKVTKQSLAQTFPE--------IKEMLKA 269 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtp--g---~~~~----~l~~~~~~~l~~~~p~--------~~~~LSg 269 (391)
..+.-+ |++++++++.|+. ++.+.++- | ..+. ++......++...+|+ ...+|||
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 776553 4778899998873 33344431 1 1111 1112222233333333 2348999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+|||||+ +.+|+++++| |.++.+.+.+.|+.+...
T Consensus 1130 GQKQRIAIARAi-lRnPkILLLDEATSALDseSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1130 GQKQRIAIARAI-LRNPKILLLDEATSALDSESERVVQEALDRAMEG 1175 (1228)
T ss_pred hHHHHHHHHHHH-HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999 888888899999887654
No 263
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=1.2e-20 Score=216.95 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=125.7
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCC-----------------------
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASD----------------------- 187 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~----------------------- 187 (391)
+.+++|+++|.+ ..+|+++||.+ +|+++|||||||||||||+++|+|++.|..
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 567999999953 46999999999 899999999999999999999999995410
Q ss_pred -------------------cccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEecc---CCCcccCC-----
Q 016339 188 -------------------AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGGYLADT----- 240 (391)
Q Consensus 188 -------------------~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt----- 240 (391)
.........|++|+|.++|.++..+.... .++++++++|+ +.+.+.++
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccccccHHHHHhcCC
Confidence 00011122357999999999998776542 56778999988 33444443
Q ss_pred cccchHH----HHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHH
Q 016339 241 PGFNQPS----LLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ 302 (391)
Q Consensus 241 pg~~~~~----l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ 302 (391)
|...+.. +...++.++...+|+- ...|||||+||++||||+ +.+|+++|+| |.+....+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-lr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-LREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2233222 3334555555555542 237999999999999999 9999999999 8889999999
Q ss_pred HHHHHH
Q 016339 303 LLDEIR 308 (391)
Q Consensus 303 ll~el~ 308 (391)
.|.++.
T Consensus 1400 ~L~~~~ 1405 (1466)
T PTZ00265 1400 TIVDIK 1405 (1466)
T ss_pred HHHHHh
Confidence 888874
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.2e-20 Score=176.56 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=111.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|.++|.++...+..
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~-------~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP-------NCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC-------CCCcceEEEECCEehHhcccc
Confidence 578889998888999999999 999999999999999999999999971000 015799999999876432211
Q ss_pred cCCCcceeeeEEEEeccCCCc---ccCCc-------cc----------chHHHHhCChhH----HhhhchhHHhhcCccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY---LADTP-------GF----------NQPSLLKVTKQS----LAQTFPEIKEMLKANE 271 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~----------~~~~l~~~~~~~----l~~~~p~~~~~LSgGq 271 (391)
. ....+.++++++....+ +.++- +. ....+..+++.. ..+..+. .|||||
T Consensus 81 ~---~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~Gq 154 (251)
T PRK14244 81 V---VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF---ELSGGQ 154 (251)
T ss_pred h---HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChh---hCCHHH
Confidence 0 01234577777763221 11110 00 001122333321 2233444 899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 155 ~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (251)
T PRK14244 155 QQRLCIARAI-AVKPTMLLMDEPCSALDPVATNVIENLIQELKK 197 (251)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 78889999999998853
No 265
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.6e-20 Score=177.15 Aligned_cols=158 Identities=11% Similarity=0.164 Sum_probs=111.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v 212 (391)
.++++.+.|++..+++++||.+ +|++++|+||||||||||+++|+|+.. ..+| ++|+|.++|.++...
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEecccc
Confidence 4578889998888999999999 999999999999999999999999730 0033 689999999876432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc---------chHHHHhCChh----HHhhhchhHHhhcCc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF---------NQPSLLKVTKQ----SLAQTFPEIKEMLKA 269 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~---------~~~~l~~~~~~----~l~~~~p~~~~~LSg 269 (391)
+... ....+.++++++....+ +.++. +. ....+..+++. ...+..+. .|||
T Consensus 76 ~~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~ 149 (250)
T PRK14245 76 GVQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAF---ALSG 149 (250)
T ss_pred cccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc---cCCH
Confidence 1100 11234577777763211 11110 00 01112223321 22334444 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14245 150 GQQQRLCIARAM-AVSPSVLLMDEPASALDPISTAKVEELIHELKK 194 (250)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999 88999999999999853
No 266
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.1e-20 Score=177.67 Aligned_cols=156 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~ 208 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+. +| ++|+|.++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~------------~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS------------ELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcccCCccceEEEECCEe
Confidence 45688999998888999999999 99999999999999999999999998 43 58999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-----------cc-----chHHHHhCCh----hHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-----------GF-----NQPSLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-----------g~-----~~~~l~~~~~----~~l~~~~p~~~~ 265 (391)
+...+... ......++++++....+ +.++- .. ....+..+++ ....+..+.
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~--- 149 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL--- 149 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc---
Confidence 64311100 01234577777763321 11110 00 0011222222 223445555
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 ~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (259)
T PRK14260 150 GLSGGQQQRLCIARAL-AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS 198 (259)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999999864
No 267
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.4e-20 Score=188.37 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=121.1
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.|++++++|.. +.+|+||||.+ +|+++|||||||+||||++++|.++. +..+|.|.|+|+++..+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff------------dv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF------------DVNSGSITIDGQDIRNV 605 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh------------hccCceEEEcCchHHHH
Confidence 457899999965 57999999999 99999999999999999999999999 99999999999999877
Q ss_pred ccccCCCcceeeeEEEEecc---CCCcccCC-----cccchHHHH----hCChhHHhhhchhHH--------hhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLS---GGGYLADT-----PGFNQPSLL----KVTKQSLAQTFPEIK--------EMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt-----pg~~~~~l~----~~~~~~l~~~~p~~~--------~~LSgGq~ 272 (391)
.+.. .+.+++.+||+ ++..+..+ |+...+.+. ..++.+-.-.||+-. -.||||||
T Consensus 606 t~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 606 TQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 6653 45667778877 22222222 444333221 123333334466533 27999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++|||++ +..|.++++| |-...+.+...|.++...
T Consensus 681 QRVAiARti-LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~ 723 (790)
T KOG0056|consen 681 QRVAIARTI-LKAPSIILLDEATSALDTNTERAIQAALARLCAN 723 (790)
T ss_pred hhHHHHHHH-hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC
Confidence 999999999 9999999999 556777888888887654
No 268
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-20 Score=180.44 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=112.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC--C---CCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~--p---~~G~I~~~g~~ 208 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. . | ++|+|+++|.+
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI------------QMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceEEEECCEE
Confidence 45688999998888999999999 99999999999999999999999997 4 3 68999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCC-------ccc-c--------hHHHHhCChh----HHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF-N--------QPSLLKVTKQ----SLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~-~--------~~~l~~~~~~----~l~~~~p~~~~ 265 (391)
+...+.. .....+.++++++....+ +.++ .+. . ...+..+++. ...+..+.
T Consensus 81 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~--- 154 (259)
T PRK14274 81 ILKGKVD---LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL--- 154 (259)
T ss_pred ccccccC---HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcc---
Confidence 6421100 001234677777763221 1111 000 0 0011122221 12333444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+++ +.+|+++++| |+.....+.++|.++..
T Consensus 155 ~LS~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 203 (259)
T PRK14274 155 SLSGGQQQRLCIARAL-ATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203 (259)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999999864
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=2.4e-20 Score=194.34 Aligned_cols=154 Identities=9% Similarity=0.126 Sum_probs=113.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|.++|.++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~------------~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY------------PHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 478899998888999999999 89999999999999999999999998 65 7999999998764322
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc---------c--c--------chHHHHhCChhHHh-hhchhHHhhcCc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP---------G--F--------NQPSLLKVTKQSLA-QTFPEIKEMLKA 269 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp---------g--~--------~~~~l~~~~~~~l~-~~~p~~~~~LSg 269 (391)
... .....++++++....+ +.++- + . ....+..+++.... +..+. .|||
T Consensus 72 ~~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSg 144 (500)
T TIGR02633 72 IRD----TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG---DYGG 144 (500)
T ss_pred HHH----HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh---hCCH
Confidence 110 0123466776653211 11100 0 0 01123334443322 33455 8999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 145 G~~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (500)
T TIGR02633 145 GQQQLVEIAKAL-NKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190 (500)
T ss_pred HHHHHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999 9999999999 899999999999998653
No 270
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7e-20 Score=174.15 Aligned_cols=155 Identities=15% Similarity=0.229 Sum_probs=111.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~g~~v 209 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .| ++|+|.++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 6 SAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH------------DLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceeEEECCEEc
Confidence 3578899998888999999999 99999999999999999999999998 54 389999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc----ccCCc-------cc-chH--------HHHhCCh----hHHhhhchhHHh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF-NQP--------SLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~-~~~--------~l~~~~~----~~l~~~~p~~~~ 265 (391)
....... ......++++++....+ +.++- +. ... .+..++. ....+..+.
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~--- 147 (252)
T PRK14272 74 YGPRVDP---VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT--- 147 (252)
T ss_pred ccCccCH---HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc---
Confidence 4311100 01234577777763211 11110 10 000 0111111 122334444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.+++.
T Consensus 148 ~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14272 148 GLSGGQQQRLCIARAL-AVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196 (252)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 88899999999998863
No 271
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.1e-20 Score=177.88 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=111.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~v 209 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+. +|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 6 KIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN------------DIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CccccCCcccEEEECCEEc
Confidence 4578899998878999999999 99999999999999999999999998 555 69999999876
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~ 266 (391)
....... ....+.++++++....+ +.++- +.. ...+..+++ ..+.+..+. .
T Consensus 74 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~ 147 (251)
T PRK14249 74 YSPNLDV---VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL---A 147 (251)
T ss_pred cccccCh---HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc---c
Confidence 4221110 01235677887764321 11110 000 001111221 123344455 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.
T Consensus 148 LS~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14249 148 LSGGQQQRLCIARVL-AIEPEVILMDEPCSALDPVSTMRIEELMQELK 194 (251)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 8889999999999884
No 272
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=9.9e-20 Score=169.56 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=107.2
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+.++.++|+ ...+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++...+.
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM------------QTLEGKVHWSNKNESEPSF 70 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCcccccccc
Confidence 356778886 456899999999 99999999999999999999999999 8999999999877643321
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC---c-ccc----hHHHHhCChhHHhh-----------hchhHHhhcCcccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT---P-GFN----QPSLLKVTKQSLAQ-----------TFPEIKEMLKANEP 272 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt---p-g~~----~~~l~~~~~~~l~~-----------~~p~~~~~LSgGq~ 272 (391)
.. ......+.++++++....+ +.++ + ... ...+..+++.+..+ ..+. .|||||+
T Consensus 71 ~~-~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~LS~G~~ 146 (218)
T cd03290 71 EA-TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI---NLSGGQR 146 (218)
T ss_pred cc-cchhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCC---cCCHHHH
Confidence 10 0001224567777663211 1111 0 011 11112223222222 2234 8999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHH--HHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQ--LLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~--ll~el~~ 309 (391)
||++||+|+ +.+|+++|+| |+.....+++ ++..+++
T Consensus 147 qrv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~ 190 (218)
T cd03290 147 QRICVARAL-YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190 (218)
T ss_pred HHHHHHHHH-hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999 7778888777 5665543
No 273
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-20 Score=202.07 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=116.8
Q ss_pred cCCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+.+++++++|+. ..++++|||.+ +|++++|+||||||||||+++|+|++ .|++|.|.++|..+
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll------------~p~~G~i~~~g~~~ 80 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL------------EQAGGLVQCDKMLL 80 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCeEEEECCEEe
Confidence 346788999963 36999999999 89999999999999999999999999 89999999988644
Q ss_pred cc-------cccccCC-Ccce-eeeEEEEeccCC--C----cccCCc--------cc--------chHHHHhCChh---H
Q 016339 210 GE-------VSTKSGR-GKHT-TRHVSLLPLSGG--G----YLADTP--------GF--------NQPSLLKVTKQ---S 255 (391)
Q Consensus 210 ~~-------v~~~~~~-~~~t-tr~i~~v~~~~~--~----~l~Dtp--------g~--------~~~~l~~~~~~---~ 255 (391)
.. +...... .... ...+++++|... . .+.++- +. ....+..+++. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh
Confidence 11 1000000 0001 135888888631 1 111110 11 11224455553 3
Q ss_pred HhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..+.+|. +|||||+||++||+++ +.+|+++|+| |+.....+++++.++..+
T Consensus 161 ~~~~~~~---~LSgGq~QRv~iA~AL-~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 161 ILSRYPH---QLSGGMRQRVMIAMAL-SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HHhCCCc---cCCHHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 4677777 9999999999999999 9999999999 899999999999999764
No 274
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.6e-20 Score=175.32 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=112.0
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~v 209 (391)
.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+. . |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN------------DHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred EEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCCCcceEEEECCEEc
Confidence 3578899998888999999999 89999999999999999999999997 4 3899999999776
Q ss_pred cccccccCCCcceeeeEEEEeccCCCc---ccCCcc-------cc---------hHHHHhCChh----HHhhhchhHHhh
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPG-------FN---------QPSLLKVTKQ----SLAQTFPEIKEM 266 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~~---------~~~l~~~~~~----~l~~~~p~~~~~ 266 (391)
...+... ......++++++....+ +.++.. .. ...+..+++. ...+..+. .
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 146 (250)
T PRK14262 73 YDPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGT---R 146 (250)
T ss_pred ccchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChh---h
Confidence 4321100 01234577777763221 111100 00 0011122221 12344444 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++++| |+.....+.++|.++.+
T Consensus 147 LS~Gq~qr~~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14262 147 LSGGQQQRLCIARAL-AVEPEVILLDEPTSALDPIATQRIEKLLEELSE 194 (250)
T ss_pred cCHHHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999 88899999999999864
No 275
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-20 Score=181.75 Aligned_cols=156 Identities=20% Similarity=0.256 Sum_probs=113.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-----CCCCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-----p~~G~I~~~g~~ 208 (391)
+.+++++++|++..++++++|++ +|++++|+|+||||||||+++|+|+. + |++|+|.++|.+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV------------ELVPSVKTTGKILYRDQN 92 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceeEEECCEE
Confidence 45688999998888999999999 89999999999999999999999998 5 699999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccch---------HHHHhC----ChhHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFNQ---------PSLLKV----TKQSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~~---------~~l~~~----~~~~l~~~~p~~~~ 265 (391)
+...+.. .....+.+++++++...+ +.++- +... ..+..+ ++....+..+.
T Consensus 93 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--- 166 (271)
T PRK14238 93 IFDKSYS---VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY--- 166 (271)
T ss_pred ccccccc---HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc---
Confidence 6422110 011235677888764322 11110 0000 001111 11222344455
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 167 ~LSgGe~qrv~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 167 GLSGGQQQRLCIARCL-AIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred cCCHHHHHHHHHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999 9999999999 88999999999998864
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.8e-20 Score=175.05 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=111.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~ 213 (391)
.++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+..+..+ .|++|+|.++|.++.. ..
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-------VKITGKLTMDGEDIYGNID 77 (249)
T ss_pred EEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEEcccccc
Confidence 4578899998888999999999 8999999999999999999999999821100 1469999999976632 11
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc-h--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN-Q--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~-~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.. ...+.++++++....+ +.++- +.. . ..+..+++ ....+..+. .||||
T Consensus 78 ~~-----~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~LS~G 149 (249)
T PRK14253 78 VA-----DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF---GLSGG 149 (249)
T ss_pred hH-----HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc---cCCHH
Confidence 10 1234577777663321 11110 000 0 01111222 122334444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 150 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 193 (249)
T PRK14253 150 QQQRLCIARTI-AMEPDVILMDEPTSALDPIATHKIEELMEELKK 193 (249)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999999865
No 277
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-20 Score=189.83 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=124.4
Q ss_pred cCCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++|+|.+.. +|+++||++ +||.+||+|+||||||||+++|.|.+ +|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc------------CCCCCeeeECCcChhh
Confidence 45689999997665 999999999 89999999999999999999999999 9999999999999887
Q ss_pred cccccCCCcceeeeEEEEeccCC---Cccc-----CCcccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLA-----DTPGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~-----Dtpg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++.. ..+.++++.|..+ +.+. .+|....+. +..++++++....|+ -...|||||
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 77642 2334455555422 2233 335555443 456777777666552 334899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||++|||++ +++.+++++| |+...+.+++++.+-.+
T Consensus 480 ~rRLAlAR~L-L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 480 RRRLALARAL-LHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred HHHHHHHHHH-HcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 9999999999 9999999999 89999999999887554
No 278
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=3.2e-20 Score=195.25 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=118.5
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+++++|+++ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW------------PPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEehhh
Confidence 557899999954 47999999999 89999999999999999999999999 9999999999988766
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+.+++++++.. +.+.++ +...... +...+..++...+|+ -...|||||
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 54322 3456788887632 222222 1122222 223344444444442 123799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 460 ~qrl~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 501 (544)
T TIGR01842 460 RQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKALK 501 (544)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8889999989888875
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=2.8e-20 Score=195.19 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=115.8
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-----CCCcceec
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFE 205 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-----~~G~I~~~ 205 (391)
.+++++++|++ ..+++++||.+ +|++++|+||||||||||+++|+|++ +| ++|+|.++
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL------------PSPPVVYPSGDIRFH 74 (529)
T ss_pred EEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCcCCccceEEEEC
Confidence 35778889963 46999999999 99999999999999999999999998 54 79999999
Q ss_pred CccccccccccCCCcceeeeEEEEeccCCCccc--CC------------cccc--------hHHHHhCChhH---Hhhhc
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DT------------PGFN--------QPSLLKVTKQS---LAQTF 260 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~--Dt------------pg~~--------~~~l~~~~~~~---l~~~~ 260 (391)
|.++........ .....+.+++++|.....+. .+ .+.. ...+..+++.+ ..+..
T Consensus 75 g~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 75 GESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred CEecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 987754322100 00012357888876321000 00 0111 12233445533 34566
Q ss_pred hhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 261 p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++..+
T Consensus 154 ~~---~LSgGe~qrv~iAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 154 PH---QLSGGERQRVMIAMAL-LTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred Cc---ccCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 77 9999999999999999 9999999999 899999999999998765
No 280
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-20 Score=178.10 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=112.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|++ +|++++|+||||||||||+++|+|+.... -..|++|+|+++|.++...+
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLI-------PGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccC-------CCCCCccEEEECCEEccccc
Confidence 34678999998878999999999 99999999999999999999999986100 00148999999998764321
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCC-------ccc-ch--------HHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGF-NQ--------PSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~-~~--------~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
... ....+.++++++....+ +.++ .+. .. ..+..+++ ..+.+..+. .||+|
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 150 (250)
T PRK14266 77 VDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSAL---GLSGG 150 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc---cCCHH
Confidence 100 01234577777663322 1111 000 00 01122222 122344444 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++++| |+.....+.++|.++..
T Consensus 151 q~qrv~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14266 151 QQQRLCIARTI-AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE 194 (250)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999 88899999999998854
No 281
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.80 E-value=7.2e-20 Score=167.95 Aligned_cols=143 Identities=22% Similarity=0.260 Sum_probs=107.3
Q ss_pred CCeeEEEEcCC------ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 136 g~~~v~~s~~~------~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++|++ ..++++++|.+ +|++++|+||||||||||+++|+|+.. ..|++|+|.++|.+
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~----------~~~~~G~i~~~g~~ 74 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT----------GLGVSGEVLINGRP 74 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC----------CCCCceEEEECCEe
Confidence 45788999975 57999999999 899999999999999999999999861 15789999999987
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcE
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
+... ...+.++++++....+ ...... ..+. +.. .+ ..||+||+||++||+|+ +.+|++
T Consensus 75 ~~~~--------~~~~~i~~~~q~~~~~--~~~t~~-~~i~------~~~---~~-~~LS~G~~qrv~laral-~~~p~i 132 (194)
T cd03213 75 LDKR--------SFRKIIGYVPQDDILH--PTLTVR-ETLM------FAA---KL-RGLSGGERKRVSIALEL-VSNPSL 132 (194)
T ss_pred CchH--------hhhheEEEccCcccCC--CCCcHH-HHHH------HHH---Hh-ccCCHHHHHHHHHHHHH-HcCCCE
Confidence 6431 1335677777653211 110011 1110 000 00 17999999999999999 999999
Q ss_pred EEec------CHHHHHHHHHHHHHHHHH
Q 016339 289 VVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 289 lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+| |+.....+.++|.++.++
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9999 888999999999987653
No 282
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.6e-20 Score=178.10 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=112.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+... .|++|+|.++|.++.....
T Consensus 22 ~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 22 EVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-------AKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred EEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC-------CCcCceEEECCEecccccc
Confidence 4578899998878999999999 9999999999999999999999999721000 1368999999987642111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------cc-------hHHHHhCCh----hHHhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------FN-------QPSLLKVTK----QSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------~~-------~~~l~~~~~----~~l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.++++++....+ +.++-. +. ...+..+++ .+..+..+. .|||||+|
T Consensus 95 ~~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LSgGq~q 168 (274)
T PRK14265 95 NS---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGT---ALSGGQQQ 168 (274)
T ss_pred hh---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcc---cCCHHHHH
Confidence 00 01234677777763221 111100 00 001112221 122344455 89999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 169 rv~LAraL-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 209 (274)
T PRK14265 169 RLCIARAI-AMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209 (274)
T ss_pred HHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999864
No 283
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-19 Score=175.39 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=113.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+||||||||||+++|+|+..+.. ..|++|+|+++|.++....
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD-------NCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCcc-------CCCCceEEEECCEECcccc
Confidence 45689999998888999999999 999999999999999999999999972000 0158999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCC-------cccc---------hHHHHhCChh----HHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADT-------PGFN---------QPSLLKVTKQ----SLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-------pg~~---------~~~l~~~~~~----~l~~~~p~~~~~LSgG 270 (391)
.. .....+.++++++....+ +.++ .+.. ...+..+++. ...+..+. .||||
T Consensus 99 ~~---~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~LS~G 172 (272)
T PRK14236 99 VD---VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAF---GLSGG 172 (272)
T ss_pred cC---HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcc---cCCHH
Confidence 10 001235677777763221 1111 1110 0111122221 12233344 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 173 q~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 173 QQQRLVIARAI-AIEPEVLLLDEPTSALDPISTLKIEELITELKS 216 (272)
T ss_pred HHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88999999999999864
No 284
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.80 E-value=1.2e-19 Score=170.67 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=102.4
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC----CCCcceecCccccccccccCCCccee
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p----~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
++++++|.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++.... ...
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~G~i~~~g~~~~~~~-------~~~ 61 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL------------PPGLTQTSGEILLDGRPLLPLS-------IRG 61 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCccCccccEEEECCEechhhh-------hhh
Confidence 467899999 89999999999999999999999998 77 8999999998764321 122
Q ss_pred eeEEEEeccCCCcccC--C-----------ccc--------chHHHHhCChh---HHhhhchhHHhhcCccccccccccc
Q 016339 224 RHVSLLPLSGGGYLAD--T-----------PGF--------NQPSLLKVTKQ---SLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 224 r~i~~v~~~~~~~l~D--t-----------pg~--------~~~~l~~~~~~---~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
+.+++++++....+.. + .+. ....+..+++. .+.+..+. .|||||+||++||+
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~LS~G~~qrv~lar 138 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPF---QLSGGMLQRVMIAL 138 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChh---hcCHHHHHHHHHHH
Confidence 4577777663210100 0 000 01122333443 33455555 89999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 139 al-~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 139 AL-LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 99 9999999999 888999999999998764
No 285
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=173.23 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=112.1
Q ss_pred hcCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-----
Q 016339 134 TWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----- 207 (391)
Q Consensus 134 ~~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~----- 207 (391)
.+.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.++|.
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~------------~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI------------EIYDSKIKVDGKVLYFG 77 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCcCceeEcCEEEECC
Confidence 367799999999999999999999 99999999999999999999999999 888877766653
Q ss_pred -cccccccccCCCcceeeeEEEEeccCCCc----ccCC-------cccc---------hHHHHhCChh----HHhhhchh
Q 016339 208 -RVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGFN---------QPSLLKVTKQ----SLAQTFPE 262 (391)
Q Consensus 208 -~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~~---------~~~l~~~~~~----~l~~~~p~ 262 (391)
++...... .....++++++....+ +.++ .++. ...+..+++. ...+..+.
T Consensus 78 ~~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (257)
T PRK14246 78 KDIFQIDAI-----KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152 (257)
T ss_pred cccccCCHH-----HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc
Confidence 22211110 1234567777653211 1111 0111 1112223332 22344455
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.||+||+||+++|+|+ +.+|+++++| |+.....+.++|.++++
T Consensus 153 ---~LS~G~~qrl~laral-~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (257)
T PRK14246 153 ---QLSGGQQQRLTIARAL-ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201 (257)
T ss_pred ---cCCHHHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999 9999999999 78889999999998864
No 286
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=2.7e-20 Score=201.15 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=121.0
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.. ..+++++|+.+ +|+.++|+|+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~------------~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY------------TPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEehhh
Confidence 557899999953 45899999999 89999999999999999999999999 9999999999998877
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
++... .++.+++++|+. .+.+.|+ |..... .+...++.++...+|. ....|||||
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 65532 356677888763 2333222 223222 2334455555444442 223799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||+++|||+ +.+|+++|+| |+.....+.+.+.++.
T Consensus 599 ~qri~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 599 RQRIAIARAL-VGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8899999999998874
No 287
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.80 E-value=6.9e-21 Score=163.93 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=92.8
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
|+++++.+ +|++++|+|+||||||||+++|+|.. .|++|.|.+++.++...... .....+++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~------------~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~ 63 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL------------PPDSGSILINGKDISDIDIE-----ELRRRIGY 63 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS------------HESEEEEEETTEEGTTSHHH-----HHHHTEEE
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc------------cccccccccccccccccccc-----cccccccc
Confidence 56788899 89999999999999999999999999 89999999999888662221 13466888
Q ss_pred EeccCCCc----ccCC--cccchHHHHhCChhHHhhhchh-HHhhcCcccccccccccccccCCCcEEEecCH
Q 016339 229 LPLSGGGY----LADT--PGFNQPSLLKVTKQSLAQTFPE-IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 229 v~~~~~~~----l~Dt--pg~~~~~l~~~~~~~l~~~~p~-~~~~LSgGq~qr~~iaralh~~eP~~lllDD~ 294 (391)
+++....+ +.++ .......+..++...+.+...+ -...||+||+||++||+++ +.+|+++|+|+|
T Consensus 64 ~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al-~~~~~llllDEP 135 (137)
T PF00005_consen 64 VPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL-LKNPKLLLLDEP 135 (137)
T ss_dssp EESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH-HTTSSEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 88762211 1111 0112223445555554444330 0139999999999999999 999999999976
No 288
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.9e-20 Score=180.07 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.++++.++|++..+|+++||.+ +|++++|+||||||||||+++|+|+..+. ...|++|+|.++|.++.....
T Consensus 47 ~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~-------~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 47 SVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI-------KAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred EEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------CCCCCceEEEECCEEcccccc
Confidence 4578899998888999999999 99999999999999999999999997100 001689999999976643111
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCcc-------------------c---------chHHHHhCCh----hHHhhh
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPG-------------------F---------NQPSLLKVTK----QSLAQT 259 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg-------------------~---------~~~~l~~~~~----~~l~~~ 259 (391)
.. ....+.++++++....+ +.++-. . ....+..+++ ....+.
T Consensus 120 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 NL---VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred cH---HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 00 01234567777653211 111000 0 0011112222 123344
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+. .|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++...
T Consensus 197 ~~~---~LSgGq~qrv~LAraL-~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~ 249 (305)
T PRK14264 197 NAL---GLSGGQQQRLCIARCL-AVDPEVILMDEPASALDPIATSKIEDLIEELAEE 249 (305)
T ss_pred ccc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 455 8999999999999999 9999999999 889999999999998653
No 289
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.6e-20 Score=175.82 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=111.6
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..+.+.+.|++..++++++|.+ +|++++|+|+||||||||+++|+|+..+... .|++|+|+++|.++.....
T Consensus 10 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG-------FRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred EEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC-------CCCceEEEECCEecccccc
Confidence 3467788898888999999999 9999999999999999999999999821000 1379999999987643211
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCCccc--------------chHHHHhCChhH----HhhhchhHHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADTPGF--------------NQPSLLKVTKQS----LAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dtpg~--------------~~~~l~~~~~~~----l~~~~p~~~~~LSgGq~q 273 (391)
.. ....+.+++++++...+ +.++-.+ ....+..+++.. ..+..+. .||+||+|
T Consensus 83 ~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS~G~~q 156 (261)
T PRK14263 83 DP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGL---SLSGGQQQ 156 (261)
T ss_pred ch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcc---cCCHHHHH
Confidence 10 01235577777763321 1111100 011122222211 1122233 79999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|++||+|+ +.+|+++|+| |+.....+.+++.++.+
T Consensus 157 rv~laral-~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~ 197 (261)
T PRK14263 157 RLCIARAI-ATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197 (261)
T ss_pred HHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 88999999999999853
No 290
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.3e-20 Score=181.69 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=112.5
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|. ...+|+++||.| +|++++|+||||||||||+++|+|+..... ..|++|+|.|+|.++..
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~-------~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE-------GTSHEGEIYFLGTNTRS 153 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-------CCCCceEEEECCEEccc
Confidence 45688999995 346999999999 899999999999999999999999972100 02679999999988742
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCCcc-------cchH---------HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPG-------FNQP---------SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dtpg-------~~~~---------~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++... +.+.++-. .... .+..+++ ....+..+. .||
T Consensus 154 ~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~---~LS 227 (329)
T PRK14257 154 KKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN---ALS 227 (329)
T ss_pred cccch---HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc---cCC
Confidence 11000 012356788887632 22222211 1000 1122221 112233344 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||||+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 228 gGqkqRl~LARAl-~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~ 273 (329)
T PRK14257 228 GGQQQRLCIARAI-ALEPEVLLMDEPTSALDPIATAKIEELILELKK 273 (329)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 78888889999988865
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=1e-19 Score=190.95 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=116.0
Q ss_pred CCeeEEEEcC-----------CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce
Q 016339 136 GYEPLFCSVE-----------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (391)
Q Consensus 136 g~~~v~~s~~-----------~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~ 203 (391)
.+++++++|+ ...+++++||.+ +|++++|+||||||||||+++|+|+. + ++|+|+
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~-~~G~i~ 343 (529)
T PRK15134 277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------------N-SQGEIW 343 (529)
T ss_pred cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------------C-CCcEEE
Confidence 4577888885 246899999999 99999999999999999999999997 5 799999
Q ss_pred ecCccccccccccCCCcceeeeEEEEeccCC--C----cccCCc---------cc--------chHHHHhCChh-HHhhh
Q 016339 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADTP---------GF--------NQPSLLKVTKQ-SLAQT 259 (391)
Q Consensus 204 ~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~--~----~l~Dtp---------g~--------~~~~l~~~~~~-~l~~~ 259 (391)
++|.++...+.... ....+.++++++... . .+.++- .. ....+..+++. ...+.
T Consensus 344 ~~g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 421 (529)
T PRK15134 344 FDGQPLHNLNRRQL--LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR 421 (529)
T ss_pred ECCEEccccchhhH--HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc
Confidence 99987654322100 001245777777631 1 111110 00 11223445654 45667
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|. .|||||+||++||+++ +.+|+++|+| |+.....++++|.++.++
T Consensus 422 ~~~---~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 422 YPA---EFSGGQRQRIAIARAL-ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred CCc---cCCHHHHHHHHHHHHH-hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 777 9999999999999999 9999999999 899999999999998764
No 292
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=171.77 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=111.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~ 211 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+... .| ++|+|.++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~----------~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 7 TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL----------IPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred EEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc----------CCCCCcccEEEEcCEEccc
Confidence 4578899998888999999999 9999999999999999999999998610 13 58999999987643
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc-------ccch-----H----HHHhCCh----hHHhhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFNQ-----P----SLLKVTK----QSLAQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~~-----~----~l~~~~~----~~l~~~~p~~~~~LS 268 (391)
..... ....+.++++++....+ +.++. +... . .+..+++ ....+..+. .||
T Consensus 77 ~~~~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~---~LS 150 (252)
T PRK14255 77 PNEDV---VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL---SLS 150 (252)
T ss_pred ccccH---HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcc---cCC
Confidence 11100 01234677888764321 11110 1000 0 0111111 122334444 899
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+||++||+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 151 ~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 151 GGQQQRVCIARVL-AVKPDVILLDEPTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 88899999999999865
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.79 E-value=6.7e-20 Score=194.50 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+++++|+.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~------------~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY------------DPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC------------CCCCCEEEECCEEhhhC
Confidence 557899999975 46899999999 99999999999999999999999999 99999999999887655
Q ss_pred ccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.+++++|+.. +.+.++ |...+.. +...+..+.....|. ....|||||+
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 4322 3456788887632 222222 2222221 222233333222221 1237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 478 qrl~lARal-l~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 478 QRLAIARAI-LKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8889999999888764
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4e-20 Score=193.09 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=104.7
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+.. ....+.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~~~~~~~~----~~~~~~i 340 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD------------KRAGGEIRLNGKDISPRSPL----DAVKKGM 340 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCEECCCCCHH----HHHHCCc
Confidence 4899999999 89999999999999999999999999 99999999998765321110 0011234
Q ss_pred EEEeccC---CC----cccCC---c------------c---------cchHHHHhCChh-HHhhhchhHHhhcCcccccc
Q 016339 227 SLLPLSG---GG----YLADT---P------------G---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 227 ~~v~~~~---~~----~l~Dt---p------------g---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr 274 (391)
+++++.. +. .+.++ + + .....+..+++. +..+..|. .|||||+||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qr 417 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT---ELSGGNQQK 417 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc---cCChHHHHH
Confidence 5555431 10 01000 0 0 011234445554 45566677 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 418 v~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 458 (510)
T PRK09700 418 VLISKWL-CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458 (510)
T ss_pred HHHHHHH-hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 899999999999998753
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=4.9e-20 Score=194.92 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=116.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.++|.. ..+++++|+.+ +|+.++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~------------~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF------------DVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEHhh
Confidence 456888999964 46899999999 99999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----cccchHH----HHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----PGFNQPS----LLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----pg~~~~~----l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ....+++++++.. +.+.++ |...+.. +...+..+....+|. ....|||||
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 54321 3456777777632 223222 2222222 223333333333332 123699999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++|||++ +.+|+++|+| |++..+.+.+.+.++.
T Consensus 457 ~qRi~lARal-l~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 457 KQRISIARAL-LLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHH-hcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999 8889999999888764
No 296
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.1e-20 Score=168.04 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=114.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++..++..++++++++ .||+++|+||||+||||||+.|+|.. .|++|++.++|......+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel------------~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL------------SPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc------------CCCCCeEeeCCcChhhCCHH
Confidence 478889999999999999999 89999999999999999999999999 99999999999877655432
Q ss_pred cCCCcceeeeEEEEeccC--------------CCccc---CCc----ccchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 216 SGRGKHTTRHVSLLPLSG--------------GGYLA---DTP----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~--------------~~~l~---Dtp----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..++.+.++|.. |..-. ..| .+....+...+...++.++-. .||||||||
T Consensus 72 ~-----lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~---~LSGGEqQR 143 (259)
T COG4559 72 E-----LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR---TLSGGEQQR 143 (259)
T ss_pred H-----HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchh---hcCchHHHH
Confidence 1 111222222220 10000 111 123344566777777777655 999999999
Q ss_pred cccccccccC------CCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 275 CSFNNCLHLG------EPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 275 ~~iaralh~~------eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
+.|||.| .. ++..+++| |.......+++.+++..+..
T Consensus 144 VqlARvL-aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~ 192 (259)
T COG4559 144 VQLARVL-AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGG 192 (259)
T ss_pred HHHHHHH-HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCC
Confidence 9999987 42 23378888 78888999999998876653
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=5.6e-20 Score=191.06 Aligned_cols=154 Identities=18% Similarity=0.122 Sum_probs=113.5
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCcccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v~~ 214 (391)
++++.++|++..+++++||.+ +|++++|+||||||||||+++|+|+. ++ ++|+|+++|.++..-..
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~------------~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH------------PQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred EeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CcccCCeEEEecccCCCCCC
Confidence 355778888778999999999 99999999999999999999999976 55 79999999875421000
Q ss_pred ccCCCcceeeeEEEEeccCCCc------c--------cCC-------cc----cchHHHHhCChhH-HhhhchhHHhhcC
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY------L--------ADT-------PG----FNQPSLLKVTKQS-LAQTFPEIKEMLK 268 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~------l--------~Dt-------pg----~~~~~l~~~~~~~-l~~~~p~~~~~LS 268 (391)
. ....+.++++++..... . .+. +. .....+..+++.. ..+..|. .||
T Consensus 331 ~----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 403 (490)
T PRK10938 331 I----WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFH---SLS 403 (490)
T ss_pred H----HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchh---hCC
Confidence 0 00123455555532110 0 000 00 1122344566665 6677777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 404 gGq~qrv~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 404 WGQQRLALIVRAL-VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999 889999999999998765
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.3e-20 Score=177.78 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=112.4
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-----CCcceecCcc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-----~G~I~~~g~~ 208 (391)
+.+++++++|++..+++++||.+ +|++++|+|+||||||||+++|+|+. +|+ +|+|.++|.+
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN------------ELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc------------CCCCCccccceEEECCEE
Confidence 45688999998878999999999 99999999999999999999999998 553 7999998876
Q ss_pred ccccccccCCCcceeeeEEEEeccCCCc---ccCCc-------cc-c--------hHHHHhCCh----hHHhhhchhHHh
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GF-N--------QPSLLKVTK----QSLAQTFPEIKE 265 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~-~--------~~~l~~~~~----~~l~~~~p~~~~ 265 (391)
+....... ....+.++++++....+ +.++- ++ . ...+..+++ ..+.+..+.
T Consensus 76 i~~~~~~~---~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 149 (261)
T PRK14258 76 IYERRVNL---NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL--- 149 (261)
T ss_pred hhccccch---HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc---
Confidence 63211100 01234577777653221 11110 11 0 011112222 122344444
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.++...
T Consensus 150 ~LSgGq~qrv~laral-~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~ 199 (261)
T PRK14258 150 DLSGGQQQRLCIARAL-AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR 199 (261)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999 9999999999 889999999999998653
No 299
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=5.2e-20 Score=213.46 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=123.3
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++++++|... .+|+++||++ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++..
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~------------~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV------------ELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCEeccc
Confidence 5579999999643 6999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC--cc--cch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PG--FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg--~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++++++++|+. .+.+.++ |+ ..+ ..+...++.+.....|. -...||||||
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 76543 567799999983 3444443 21 122 22334455544444442 2237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.|++..
T Consensus 1381 QrlaLARAL-Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1381 QLLSLARAL-LRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 999999999 9999999999 8888888888888763
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.1e-20 Score=192.87 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=110.5
Q ss_pred CeeEEEEcC---CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC-CCCCcceecCccccc
Q 016339 137 YEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~---~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-p~~G~I~~~g~~v~~ 211 (391)
+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. + |++|+|+++|.++..
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY------------PGRWEGEIFIDGKPVKI 329 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCcEEEECCEECCC
Confidence 355677773 346899999999 89999999999999999999999998 7 599999999876532
Q ss_pred cccccCCCcceeeeEEEEeccCC---C----cccCCc--------------------ccchHHHHhCChh-HHhhhchhH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---G----YLADTP--------------------GFNQPSLLKVTKQ-SLAQTFPEI 263 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~----~l~Dtp--------------------g~~~~~l~~~~~~-~l~~~~p~~ 263 (391)
.+.. ......++++++... . .+.++- ......+..+++. ...+.++.
T Consensus 330 ~~~~----~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 404 (506)
T PRK13549 330 RNPQ----QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA- 404 (506)
T ss_pred CCHH----HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-
Confidence 1110 001223555555421 0 000100 0011223445553 34566666
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||||||||++||+|+ +.+|+++|+| |+.....+.+++.++.++
T Consensus 405 --~LSgG~kqrv~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 405 --RLSGGNQQKAVLAKCL-LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred --cCCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 9999999999999999 9999999999 889999999999998754
No 301
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=1e-19 Score=174.19 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=107.6
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------e
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------F 204 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~ 204 (391)
.+++++|+.+ .+++++++ + +|++++|+||||||||||+++|+|++ +|++|+|+ +
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~~~~~~~~~~~ 70 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL------------KPNLGKFDDPPDWDEILDEF 70 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEeeccccchhhhhc
Confidence 3577889765 59999995 7 89999999999999999999999999 99999996 6
Q ss_pred cCccccccccccCCCcceeeeEEEEeccCCCc-------ccCC------cccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY-------LADT------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~-------l~Dt------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+|.++........ + ....++++++..... +.+. .......+..+++....+..+. .||+||
T Consensus 71 ~g~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~---~LS~G~ 144 (255)
T cd03236 71 RGSELQNYFTKLL--E-GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNID---QLSGGE 144 (255)
T ss_pred cCchhhhhhHHhh--h-cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChh---hCCHHH
Confidence 6665533211100 0 011233333321111 0000 0111223444555555566666 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||++||+|+ +.+|+++++| |+.....+.+++.++.++
T Consensus 145 ~qrv~laral-~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~ 188 (255)
T cd03236 145 LQRVAIAAAL-ARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188 (255)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 888999999999998754
No 302
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=4.5e-20 Score=213.27 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=122.9
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|.. ..+|+++||.+ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++..
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~------------~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV------------ELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCceEEECCEEhhh
Confidence 567999999954 46999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--cc--cch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--PG--FNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--pg--~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++++++++|+ +.+.+.++ |+ ..+ ..+...++.+.....|. ....||||||
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 76543 46778999988 33444443 21 222 22344455554444442 2237999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+.+.+++..
T Consensus 1378 QrlaLARAL-Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1378 QLLSLARAL-LRRSKILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 999999999 9999999999 8888888888887753
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=2.6e-20 Score=194.99 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=112.5
Q ss_pred CeeEEEEcCC-----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Cccc
Q 016339 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRV 209 (391)
Q Consensus 137 ~~~v~~s~~~-----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v 209 (391)
++++.++|+. ..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++ |...
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL------------EPTSGEVNVRVGDEW 349 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEecCCcc
Confidence 4667888842 46899999999 89999999999999999999999999 8999999995 5322
Q ss_pred cccccccC-CCcceeeeEEEEeccCCCc----ccCCc------cc--------chHHHHhCChhH-----HhhhchhHHh
Q 016339 210 GEVSTKSG-RGKHTTRHVSLLPLSGGGY----LADTP------GF--------NQPSLLKVTKQS-----LAQTFPEIKE 265 (391)
Q Consensus 210 ~~v~~~~~-~~~~ttr~i~~v~~~~~~~----l~Dtp------g~--------~~~~l~~~~~~~-----l~~~~p~~~~ 265 (391)
..+..... ......+.++++++....+ +.++- .. ....+..+++.. +.+.+|.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 426 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD--- 426 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh---
Confidence 11111000 0000123577777763321 11110 00 011233445532 4567777
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 427 ~LSgGq~qrv~laral-~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 427 ELSEGERHRVALAQVL-IKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 899999999999998765
No 304
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.79 E-value=5.9e-20 Score=193.78 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=115.3
Q ss_pred hcCCeeEEEEcCCc-----cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc
Q 016339 134 TWGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (391)
Q Consensus 134 ~~g~~~v~~s~~~~-----~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~ 207 (391)
.+.+++++++|++. .+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~------------~p~~G~i~~~g~ 404 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY------------IPQEGEILLDGA 404 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCE
Confidence 35678999999752 4899999999 99999999999999999999999999 999999999998
Q ss_pred cccccccccCCCcceeeeEEEEeccC---CCcccCC--cccch----HHHHhCChhHHhhhchhH---HhhcCccccccc
Q 016339 208 RVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PGFNQ----PSLLKVTKQSLAQTFPEI---KEMLKANEPAKC 275 (391)
Q Consensus 208 ~v~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg~~~----~~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~ 275 (391)
++...+... ....+++++++. .+.+.++ |...+ ..+..+++.+.....|+. ...|||||+||+
T Consensus 405 ~i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 405 AVSADSRDD-----YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred ECCCCCHHH-----HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 886654321 345677777763 2223222 11111 223344444444444432 137999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHH-HHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLL-DEI 307 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll-~el 307 (391)
+||||+ +.+|+++|+| |++..+.+.+.+ +.+
T Consensus 480 alaRal-l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 480 ALICAW-LEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred HHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 999999 9999999999 788888876644 344
No 305
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.1e-20 Score=169.93 Aligned_cols=160 Identities=23% Similarity=0.236 Sum_probs=116.8
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++++.|+++.+|++|++.+ +|+.++|+|||||||||||++++|.+ .|++|.+.+.|.+.+...
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~------------~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH------------PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc------------CCCCCceeeeeeeccCCc
Confidence 45689999999999999999999 89999999999999999999999999 888999888776554322
Q ss_pred c-------------ccC-C--CcceeeeEEEE--eccCCCcccCC-c---ccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 214 T-------------KSG-R--GKHTTRHVSLL--PLSGGGYLADT-P---GFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~-------------~~~-~--~~~ttr~i~~v--~~~~~~~l~Dt-p---g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
- ... . ..++-+++.+- +-..+.+-.+. + ......+..++..+++++.-. .||-||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~---~LS~Ge 176 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---SLSQGE 176 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---hcCHhH
Confidence 1 100 0 00111222110 10111111011 0 112234556788888888777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+.||||+ +..|.++|+| |....+.+++.+.++...
T Consensus 177 ~rrvLiaRAL-v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 177 QRRVLIARAL-VKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999 788888999999988755
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.79 E-value=1.5e-20 Score=175.02 Aligned_cols=138 Identities=14% Similarity=0.029 Sum_probs=91.9
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-ecCccccccccccCCCccee--e
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTT--R 224 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-~~g~~v~~v~~~~~~~~~tt--r 224 (391)
+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|. +++..+. +...+...+..+ .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~sG~i~~~~~~~~~-~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD------------APDEGDFIGLRGDALP-LGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCCCEEEecCceec-cccccccCCcCcHHH
Confidence 688999999 89999999999999999999999999 99999996 7765431 111112222221 2
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
++.+....++ .+...+........++....+..+. .||+||+||++||+|+ +.+|+++|+| |+....
T Consensus 69 nl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~---~lS~G~~qrv~la~al-~~~p~llllDEP~~~lD~~~~~ 141 (213)
T PRK15177 69 NARMMASLYG---LDGDEFSHFCYQLTQLEQCYTDRVS---EYSVTMKTHLAFAINL-LLPCRLYIADGKLYTGDNATQL 141 (213)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHhChhHHhhchHh---hcCHHHHHHHHHHHHH-hcCCCEEEECCCCccCCHHHHH
Confidence 2211100000 0101111111122344455566666 9999999999999999 9999999999 567777
Q ss_pred HHHHHHHH
Q 016339 299 YYFQLLDE 306 (391)
Q Consensus 299 ~~~~ll~e 306 (391)
.+.+++.+
T Consensus 142 ~~~~~l~~ 149 (213)
T PRK15177 142 RMQAALAC 149 (213)
T ss_pred HHHHHHHH
Confidence 77776644
No 307
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.79 E-value=1.2e-19 Score=172.59 Aligned_cols=140 Identities=18% Similarity=0.147 Sum_probs=102.8
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~ 227 (391)
+|+++||.+ +|++++|+||||||||||+++|+|+. ++ +|+|.++|.++...+... ..+.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~------------~~-~G~i~~~g~~i~~~~~~~-----~~~~i~ 72 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL------------PG-SGSIQFAGQPLEAWSAAE-----LARHRA 72 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CC-CeEEEECCEecCcCCHHH-----HhhheE
Confidence 799999999 89999999999999999999999987 54 899999998764322110 123355
Q ss_pred EEeccCCCc----ccCC------cc--------cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC-----
Q 016339 228 LLPLSGGGY----LADT------PG--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG----- 284 (391)
Q Consensus 228 ~v~~~~~~~----l~Dt------pg--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~----- 284 (391)
++++..... +.++ .+ .....+..+++....+..+. .|||||+||++||+|+ +.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~la~al-~~~~~~~ 148 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN---QLSGGEWQRVRLAAVV-LQVWPDI 148 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc---cCCHHHHHHHHHHHHH-hcccccc
Confidence 555542111 1110 00 01223445566666667777 9999999999999999 76
Q ss_pred --CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 285 --EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 --eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+++|+| |+.....+.++|.++..+
T Consensus 149 ~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (248)
T PRK03695 149 NPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182 (248)
T ss_pred CCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 67999999 889999999999998653
No 308
>PRK13409 putative ATPase RIL; Provisional
Probab=99.78 E-value=7.3e-20 Score=194.01 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=113.8
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++. .|+++++.+ +|++++|+||||||||||+++|+|+. +|++|+|.++ ..++.+++..
T Consensus 344 ~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~-~~i~y~~Q~~ 409 (590)
T PRK13409 344 PDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL------------KPDEGEVDPE-LKISYKPQYI 409 (590)
T ss_pred cceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEe-eeEEEecccc
Confidence 4566677654 488999999 89999999999999999999999999 9999999886 5566666654
Q ss_pred CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 217 GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 217 ~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
......| .++.+. . .....+......+..+++..+.+..+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 410 ~~~~~~tv~e~l~~~-~----~~~~~~~~~~~~L~~l~l~~~~~~~~~---~LSGGe~QRvaiAraL-~~~p~llLLDEP 480 (590)
T PRK13409 410 KPDYDGTVEDLLRSI-T----DDLGSSYYKSEIIKPLQLERLLDKNVK---DLSGGELQRVAIAACL-SRDADLYLLDEP 480 (590)
T ss_pred cCCCCCcHHHHHHHH-h----hhcChHHHHHHHHHHCCCHHHHhCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEeCC
Confidence 3222222 111110 0 000111123445667788788888888 9999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 016339 293 ----DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++..+
T Consensus 481 t~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 481 SAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred ccCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998765
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.78 E-value=5.6e-20 Score=191.52 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=108.7
Q ss_pred eeEEEEc---CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCcccccc
Q 016339 138 EPLFCSV---ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEV 212 (391)
Q Consensus 138 ~~v~~s~---~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v 212 (391)
++++++| ++..+++++||.+ +|++++|+||||||||||+++|+|+. +| ++|+|+++|.++...
T Consensus 261 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY------------PGKFEGNVFINGKPVDIR 328 (500)
T ss_pred eCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCeEEEECCEECCCC
Confidence 4556667 2346899999999 99999999999999999999999998 75 899999998765321
Q ss_pred ccccCCCcceeeeEEEEeccCC---Cc----ccCCc------------c--------cchHHHHhCChhH-HhhhchhHH
Q 016339 213 STKSGRGKHTTRHVSLLPLSGG---GY----LADTP------------G--------FNQPSLLKVTKQS-LAQTFPEIK 264 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~---~~----l~Dtp------------g--------~~~~~l~~~~~~~-l~~~~p~~~ 264 (391)
... ....++++++++... .+ +.++. . .....+..+++.. ..+..+.
T Consensus 329 ~~~----~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 402 (500)
T TIGR02633 329 NPA----QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-- 402 (500)
T ss_pred CHH----HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc--
Confidence 110 001234555555421 10 00000 0 0112234445432 3456666
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.+++.++.+.
T Consensus 403 -~LSgGqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 403 -RLSGGNQQKAVLAKML-LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred -cCCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 889999999999998754
No 310
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.3e-19 Score=158.80 Aligned_cols=121 Identities=21% Similarity=0.378 Sum_probs=101.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+|++ +|.+|+++++|..+......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~------------~~~~G~i~~~~~~~~~~~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL------------KPTSGEILIDGKDIAKLPLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccCCHH
Confidence 467888898778999999999 89999999999999999999999999 89999999998766433211
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
. ....++++++ ||+||+||++||+++ +.+|+++++|
T Consensus 70 ~-----~~~~i~~~~q-----------------------------------lS~G~~~r~~l~~~l-~~~~~i~ilDEp~ 108 (157)
T cd00267 70 E-----LRRRIGYVPQ-----------------------------------LSGGQRQRVALARAL-LLNPDLLLLDEPT 108 (157)
T ss_pred H-----HHhceEEEee-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 1 2344555554 999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|......+.+++.++...
T Consensus 109 ~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 109 SGLDPASRERLLELLRELAEE 129 (157)
T ss_pred cCCCHHHHHHHHHHHHHHHHC
Confidence 788888898999887653
No 311
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.78 E-value=6.5e-20 Score=189.38 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=110.7
Q ss_pred cCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++. .+|++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|....
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl------------~P~sGeI~I~G~~~~ 89 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT------------MPNKGTVDIKGSAAL 89 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeee
Confidence 3457788888773 5899999999 89999999999999999999999999 999999999886421
Q ss_pred ccccccCCCccee--eeEEEEeccCCCcccCCcc---cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 211 EVSTKSGRGKHTT--RHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 211 ~v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg---~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
+..........| .++.+.....+ .+... .....+..+++....+..+. .|||||+||++||+|+ +.+
T Consensus 90 -i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~~---~LSGGQrQRVaLArAL-~~~ 161 (549)
T PRK13545 90 -IAISSGLNGQLTGIENIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPVK---TYSSGMKSRLGFAISV-HIN 161 (549)
T ss_pred -EEeccccCCCCcHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCcc---cCCHHHHHHHHHHHHH-HhC
Confidence 111111111111 11111000000 00000 11123445666666777777 9999999999999999 999
Q ss_pred CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 286 PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 286 P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++|+| |+.....++++|.++.+.
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 9999999 888999999999988643
No 312
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=1.6e-19 Score=177.89 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=132.5
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
..+++++.|. ...++++|||.+ .||++||||.||||||-..+.+++++..... ..-+|+|.|+|.++-
T Consensus 8 ~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~-------~~~sg~i~f~G~dll 80 (534)
T COG4172 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA-------AHPSGSILFDGEDLL 80 (534)
T ss_pred eeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcc-------cCccceeEEcChhhh
Confidence 3467777775 567999999999 9999999999999999999999999842111 234799999999987
Q ss_pred ccccccCCCcce-eeeEEEEeccCCCcc----------cC----Ccccc--------hHHHHhCCh---hHHhhhchhHH
Q 016339 211 EVSTKSGRGKHT-TRHVSLLPLSGGGYL----------AD----TPGFN--------QPSLLKVTK---QSLAQTFPEIK 264 (391)
Q Consensus 211 ~v~~~~~~~~~t-tr~i~~v~~~~~~~l----------~D----tpg~~--------~~~l~~~~~---~~l~~~~p~~~ 264 (391)
..++..- +.. -..++++||+.-..+ .+ ..+.. ...+..+++ +..++.||+
T Consensus 81 ~~se~~l--r~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH-- 156 (534)
T COG4172 81 AASERQL--RGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH-- 156 (534)
T ss_pred cCCHHHH--hhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc--
Confidence 7766421 112 246889998732211 00 01111 122334444 345778999
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh----hhhhhhcccccccccccccCc
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF----QLRTFGTKREGDVRYKVGDMG 334 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 334 (391)
+|||||+||+.||.|+ +++|+++|.| |..-..+++++|++|..+... +.+..+.-+.-..+.-++..|
T Consensus 157 -eLSGGqRQRVMIAMAL-an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 -ELSGGQRQRVMIAMAL-ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred -ccCcchhhHHHHHHHH-cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 9999999999999999 9999999999 778999999999999987665 334444444333344444444
No 313
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3e-19 Score=171.41 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=111.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.++++.++|++..++++++|.+ +|++++|+|+||||||||+++|+|+..+... .|++|+|.++|..+....
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPG-------NHYEGEIILHPDNVNILS 89 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCC-------CCcccEEEEcCccccccc
Confidence 34688999998888999999999 9999999999999999999999999821000 127999999987653211
Q ss_pred cccCCCcceeeeEEEEeccCCCc---ccCCc-------ccc---------hHHHHhCCh----hHHhhhchhHHhhcCcc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY---LADTP-------GFN---------QPSLLKVTK----QSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp-------g~~---------~~~l~~~~~----~~l~~~~p~~~~~LSgG 270 (391)
.... .......++++++....+ +.++. ++. ...+..+++ ....+..+. .||+|
T Consensus 90 ~~~~-~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~---~LS~G 165 (265)
T PRK14252 90 PEVD-PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF---NLSGG 165 (265)
T ss_pred cccC-HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc---cCCHH
Confidence 1000 001234577777653221 11110 100 011111221 122233334 89999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||+|+ +.+|+++|+| |+.....+.++|.+++.
T Consensus 166 ~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 209 (265)
T PRK14252 166 QQQRLCIARAL-ATDPEILLFDEPTSALDPIATASIEELISDLKN 209 (265)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999 88899999999998864
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-19 Score=190.72 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=111.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.+++. .++.+++
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~~~q 389 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL------------EPDSGTVKWSENANIGYYAQ 389 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEcc
Confidence 456788898888999999999 89999999999999999999999999 999999998873 4666666
Q ss_pred ccC--CCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh-hHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 215 KSG--RGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 215 ~~~--~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
.+. .....+ .++.+. .. ...........+..+++ ....+..+. .|||||+||++||+++ +.+|+++
T Consensus 390 ~~~~~~~~~~t~~~~~~~~----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrv~la~al-~~~p~ll 460 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQW----RQ-EGDDEQAVRGTLGRLLFSQDDIKKSVK---VLSGGEKGRMLFGKLM-MQKPNVL 460 (530)
T ss_pred cccccCCCCCcHHHHHHHh----cc-CCccHHHHHHHHHHcCCChhHhcCccc---ccCHHHHHHHHHHHHH-hcCCCEE
Confidence 432 111111 111100 00 00001112234555666 356677777 9999999999999999 9999999
Q ss_pred Eec------CHHHHHHHHHHHHHH
Q 016339 290 VKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 290 llD------D~~~~~~~~~ll~el 307 (391)
|+| |+.....+.+++.++
T Consensus 461 lLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 461 VMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHC
Confidence 999 888999998888875
No 315
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.3e-19 Score=185.44 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=125.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
.++++++|+...+|++++|.+ +|++++|+|.||||||||+|+|+|.+ .|++|+|+++|+.+...++.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~------------~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY------------PPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc------------cCCCceEEECCEEccCCCHH
Confidence 578999999999999999999 99999999999999999999999999 99999999999887654443
Q ss_pred cCCCcceeeeEEEEeccCCC----------cccCCcc----------cch---HHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGG----------YLADTPG----------FNQ---PSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~----------~l~Dtpg----------~~~---~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.. ....+..++|+... ++-..|. +.. ..+..++...-.+. ....||.|||
T Consensus 79 ~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~---~v~~Lsiaqr 151 (500)
T COG1129 79 DA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT---LVGDLSIAQR 151 (500)
T ss_pred HH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhh---hhhhCCHHHH
Confidence 21 12345556655221 1111121 111 11222222111222 3348999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh---hhhhhhcccccccccccccCccccc
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF---QLRTFGTKREGDVRYKVGDMGVQQA 338 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (391)
|.++||+|+ ..+++++|+| +....+.+++++++++.+.-. ..+...+-.+...++-+..+|..-+
T Consensus 152 Q~VeIArAl-~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 152 QMVEIARAL-SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 999999999 7799999999 456788899999999866433 2223333333444444555555443
No 316
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=7.3e-20 Score=175.98 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee--
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-- 223 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-- 223 (391)
..++++++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|. +..+.+..+.....|
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~-~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL------------SPTVGKVDRNGE-VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCE-EeEEecccCCCCCCcHH
Confidence 45799999999 99999999999999999999999999 999999999885 222222222111111
Q ss_pred eeEEEEeccCCCcc-cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHH
Q 016339 224 RHVSLLPLSGGGYL-ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWER 296 (391)
Q Consensus 224 r~i~~v~~~~~~~l-~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~ 296 (391)
.++.+. ....+.. .+........+..+++....+..+. .||+||+||++||+|+ +.+|+++|+| |+..
T Consensus 104 enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~Gq~qrv~Laral-~~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 104 ENIEFK-MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK---KYSSGMRAKLGFSINI-TVNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc---cCCHHHHHHHHHHHHH-hhCCCEEEEeCccccCCHHH
Confidence 111100 0000000 0000001112334455555666666 9999999999999999 9999999999 8888
Q ss_pred HHHHHHHHHHHHH
Q 016339 297 YQYYFQLLDEIRI 309 (391)
Q Consensus 297 ~~~~~~ll~el~~ 309 (391)
...+.+++.++..
T Consensus 179 ~~~l~~~L~~~~~ 191 (264)
T PRK13546 179 AQKCLDKIYEFKE 191 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988854
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.5e-19 Score=186.94 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=108.1
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~~i~~~~q 71 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL------------EPSAGNVSLDPNERLGKLRQ 71 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEEec
Confidence 578899998888999999999 89999999999999999999999999 89999999976 34666666
Q ss_pred ccCCCccee--eeEEEEecc-----------CCC-ccc--------------------CCcccchHHHHhCChhHHh-hh
Q 016339 215 KSGRGKHTT--RHVSLLPLS-----------GGG-YLA--------------------DTPGFNQPSLLKVTKQSLA-QT 259 (391)
Q Consensus 215 ~~~~~~~tt--r~i~~v~~~-----------~~~-~l~--------------------Dtpg~~~~~l~~~~~~~l~-~~ 259 (391)
.+......| .++.+.... ... ... +........+..+++.... +.
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 443322221 111100000 000 000 0000111234445554322 34
Q ss_pred chhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 260 FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 260 ~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
.+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.+
T Consensus 152 ~~~---~LSgGq~qrv~lA~aL-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 152 LMS---EVAPGWKLRVLLAQAL-FSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred chh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 456 9999999999999999 9999999999 88888888888754
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=1.5e-19 Score=190.73 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=112.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|++++. .++.+++
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v~q 394 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE------------QPDSGTIKIGETVKLAYVDQ 394 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEeC
Confidence 456778888888999999999 89999999999999999999999999 999999998542 4666666
Q ss_pred cc-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 215 KS-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 215 ~~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.. ...+..| .++.+.. .... ...........+..+++. ...+..+. .|||||+||++||+++ +.+|+++|
T Consensus 395 ~~~~~~~~~tv~e~l~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgG~~qrv~la~al-~~~p~lll 468 (556)
T PRK11819 395 SRDALDPNKTVWEEISGGL-DIIK-VGNREIPSRAYVGRFNFKGGDQQKKVG---VLSGGERNRLHLAKTL-KQGGNVLL 468 (556)
T ss_pred chhhcCCCCCHHHHHHhhc-cccc-ccccHHHHHHHHHhCCCChhHhcCchh---hCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 53 2222222 2222110 0000 000000112345556664 34567777 9999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~ 308 (391)
+| |+.....+.++|.++.
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCC
Confidence 99 8899999999998863
No 319
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.4e-19 Score=161.82 Aligned_cols=147 Identities=19% Similarity=0.272 Sum_probs=111.5
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt 223 (391)
....+++.|||++ +|++++|+|.||||||||.++|+|.. .|++|+|.|+|+....-. +....
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi------------~PTsG~il~n~~~L~~~D-----y~~R~ 86 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGEILINDHPLHFGD-----YSFRS 86 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc------------CCCCceEEECCccccccc-----hHhhh
Confidence 3456899999999 89999999999999999999999999 999999999998764321 11134
Q ss_pred eeEEEEeccCCC---------cccCCccc----------ch---HHHHhCCh-hHHhhhchhHHhhcCcccccccccccc
Q 016339 224 RHVSLLPLSGGG---------YLADTPGF----------NQ---PSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 224 r~i~~v~~~~~~---------~l~Dtpg~----------~~---~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
+++.++|++.+. .+.|.|-. .+ ..+..+++ .+.++.+|. .||.||+|||++|||
T Consensus 87 k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~---~la~~QKQRVaLARA 163 (267)
T COG4167 87 KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH---MLAPGQKQRVALARA 163 (267)
T ss_pred hheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh---hcCchhHHHHHHHHH
Confidence 667788887432 12333221 11 12333443 345677788 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
+ +.+|.++|.| |.....++.+++-++.++..
T Consensus 164 L-IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G 200 (267)
T COG4167 164 L-ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred H-hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC
Confidence 9 9999999999 67788888999988876543
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=1.6e-19 Score=190.36 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=112.3
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|++++. .++.+++
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~i~~v~q 392 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE------------QPDSGTIKIGETVKLAYVDQ 392 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEECCceEEEEEeC
Confidence 356788888888999999999 89999999999999999999999999 999999998543 4666666
Q ss_pred cc-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhH-HhhhchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 215 KS-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 215 ~~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.+ ...+..| .++.+.. ...+ ...........+..+++.. ..+..+. .|||||+||++||+++ +.+|+++|
T Consensus 393 ~~~~~~~~~tv~e~l~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGe~qrv~la~al-~~~p~lll 466 (552)
T TIGR03719 393 SRDALDPNKTVWEEISGGL-DIIQ-LGKREVPSRAYVGRFNFKGSDQQKKVG---QLSGGERNRVHLAKTL-KSGGNVLL 466 (552)
T ss_pred CccccCCCCcHHHHHHhhc-cccc-cCcchHHHHHHHHhCCCChhHhcCchh---hCCHHHHHHHHHHHHH-hhCCCEEE
Confidence 53 1222222 2221110 0000 0000001123455566643 4566777 9999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~ 308 (391)
+| |+.....+.++|.++.
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC
Confidence 99 8899999999999873
No 321
>PTZ00243 ABC transporter; Provisional
Probab=99.77 E-value=1.7e-19 Score=208.85 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++|+++|... .+|++|||.| +|+.+||||+||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~------------~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV------------EVCGGEIRVNGREIGA 1376 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEccc
Confidence 5589999999653 4999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--c--ccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--P--GFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--p--g~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++.+++++|+ +.+.+.++ | ...+ ..+..+++.+.....|. -...||||||
T Consensus 1377 i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1377 YGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred CCHHH-----HHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 76543 46789999998 33444333 2 1222 23444555554444332 2247999999
Q ss_pred cccccccccccCC-CcEEEec------CHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGE-PGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 273 qr~~iaralh~~e-P~~lllD------D~~~~~~~~~ll~el 307 (391)
||++||||+ +.+ |+++|+| |.+.-..+.+.|.+.
T Consensus 1452 QrLaLARAL-L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1452 QLMCMARAL-LKKGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHH-hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 885 8999999 888888888888775
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=1e-19 Score=192.04 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=110.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~ 211 (391)
+.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~------------~p~~G~i~~~~~~~i~~ 74 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFEGEARPAPGIKVGY 74 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEE
Confidence 34678999998 778999999999 89999999999999999999999999 89999998863 45666
Q ss_pred cccccCCCccee--eeEEEEeccCCC----c------ccCC--------------------------cccchHHHHhCCh
Q 016339 212 VSTKSGRGKHTT--RHVSLLPLSGGG----Y------LADT--------------------------PGFNQPSLLKVTK 253 (391)
Q Consensus 212 v~~~~~~~~~tt--r~i~~v~~~~~~----~------l~Dt--------------------------pg~~~~~l~~~~~ 253 (391)
+++.+...++.| .++.+....... + .... .......+..+++
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 666544333322 222110000000 0 0000 0000112223333
Q ss_pred hHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 254 QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 254 ~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 155 ~~-~~~~~~---~LSgGqkqrv~la~al-~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~ 210 (556)
T PRK11819 155 PP-WDAKVT---KLSGGERRRVALCRLL-LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP 210 (556)
T ss_pred Cc-ccCchh---hcCHHHHHHHHHHHHH-hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC
Confidence 21 345555 8999999999999999 9999999999 8889999989888763
No 323
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.77 E-value=1.8e-19 Score=209.43 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=120.4
Q ss_pred CeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+++++++|++ ..++++|||.+ +|++++|+||||||||||+++|+|+. .|++|+|+++|.++..-.
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll------------~ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT------------TVTSGDATVAGKSILTNI 2007 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECcchH
Confidence 5788999985 57999999999 89999999999999999999999999 999999999998764211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ ..++ .+. ....+..+++.+..++.+. .||||||||
T Consensus 2008 ~------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~---~LSGGqKqR 2078 (2272)
T TIGR01257 2008 S------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG---TYSGGNKRK 2078 (2272)
T ss_pred H------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHH
Confidence 0 1234577777763221 1111 111 1123455677777788787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++++| |+...+.+++++.+++++
T Consensus 2079 LslA~AL-i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~ 2119 (2272)
T TIGR01257 2079 LSTAIAL-IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119 (2272)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 999999999999998654
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=2.1e-19 Score=208.05 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=123.1
Q ss_pred hcCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 134 ~~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+.|++++++|.. ..+|++|||.+ +|+.+||||+||||||||+++|.|++ +|++|+|.++|.++.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~------------~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN------------ESAEGEIIIDGLNIA 1351 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------cCCCCeEEECCEEcc
Confidence 3567999999965 36999999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEecc---CCCcccCCc----ccchH----HHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLS---GGGYLADTP----GFNQP----SLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dtp----g~~~~----~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.++... .++++++++|+ +.+.+.++- ...+. .+..+++.+....+|. ....|||||
T Consensus 1352 ~i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1352 KIGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred ccCHHH-----HHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 877543 56778999988 334444442 12222 2334454444433332 224799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||++||||+ +.+|+++|+| |.+....+.+.|++..
T Consensus 1427 rQrl~LARAL-Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1427 RQLVCLARAL-LRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 8888888888887653
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-19 Score=194.08 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-ccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~~ 214 (391)
+++++++|++..+++++||.| +|++++|+||||||||||+++|+|+. .|++|+|.+++. .++.+++
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~------------~pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI------------SADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEEec
Confidence 578999999999999999999 89999999999999999999999998 899999998875 3444444
Q ss_pred ccCCCcceeeeEEEEeccCCC------------------c---c---cCC-c-----ccchHHHHhCChh-HHhhhchhH
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG------------------Y---L---ADT-P-----GFNQPSLLKVTKQ-SLAQTFPEI 263 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~------------------~---l---~Dt-p-----g~~~~~l~~~~~~-~l~~~~p~~ 263 (391)
...... ...+.++++.... . + .+. . ......+..+++. ...+..+.
T Consensus 72 ~~~~~~--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~- 148 (638)
T PRK10636 72 ETPALP--QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS- 148 (638)
T ss_pred CCCCCC--CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh-
Confidence 211100 0111111111000 0 0 000 0 0112234455553 34555666
Q ss_pred HhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 264 ~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
.|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 149 --~LSgGerqRv~LA~aL-~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~ 195 (638)
T PRK10636 149 --DFSGGWRMRLNLAQAL-ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY 195 (638)
T ss_pred --hcCHHHHHHHHHHHHH-ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 888888888888765
No 326
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.76 E-value=2.3e-19 Score=180.74 Aligned_cols=161 Identities=13% Similarity=0.174 Sum_probs=117.7
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+..+++.|+...+.++|||.+ +|++.||+|.||||||||+|+|.|++ .|++|+|+++|+.+..-++
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~------------~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY------------QPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc------------cCCcceEEECCEEeccCCH
Confidence 3467899999999999999999 99999999999999999999999999 9999999999998866555
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------ccc---chHHHHhCChhHHhhhc-----hh-HHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------PGF---NQPSLLKVTKQSLAQTF-----PE-IKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg~---~~~~l~~~~~~~l~~~~-----p~-~~~~LSgGq~qr~ 275 (391)
... ..-.+++++|.|... +.++ +.. ....-..-.+..+.+.| |+ ....||-|||||+
T Consensus 74 ~dA----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 74 RDA----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred HHH----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHH
Confidence 432 234577777764321 1111 000 00000000111121111 11 2238999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|-+|| ..+|+++|+| .|...+.++++++.++++...
T Consensus 150 EIlKaL-yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~t 192 (501)
T COG3845 150 EILKAL-YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKT 192 (501)
T ss_pred HHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 999999 9999999999 567889999999998877665
No 327
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=3.9e-19 Score=175.12 Aligned_cols=148 Identities=22% Similarity=0.290 Sum_probs=116.8
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++||+++ +|++++|||.||||||||=.+|.+++ .+. |.|+|+|+++...+.+. .+..++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~------------~s~-G~I~F~G~~i~~~~~~~--mrplR~~ 364 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI------------PSQ-GEIRFDGQDIDGLSRKE--MRPLRRR 364 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc------------CcC-ceEEECCccccccChhh--hhhhhhh
Confidence 46899999999 89999999999999999999999997 444 99999999997766532 2335678
Q ss_pred EEEEeccCCCcc---------------cCCcccc--------hHHHHhCChh-HHhhhchhHHhhcCccccccccccccc
Q 016339 226 VSLLPLSGGGYL---------------ADTPGFN--------QPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 226 i~~v~~~~~~~l---------------~Dtpg~~--------~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaral 281 (391)
++.+||+.-+.+ ...|... ...+..+++. ...++||+ ++||||+||++||||+
T Consensus 365 mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh---EFSGGQRQRIAIARAl 441 (534)
T COG4172 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH---EFSGGQRQRIAIARAL 441 (534)
T ss_pred ceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc---ccCcchhhHHHHHHHH
Confidence 899999833221 1112221 2234455553 45789999 9999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+.+|.++++| |..-..+++++|++|.++...
T Consensus 442 -iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L 478 (534)
T COG4172 442 -ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478 (534)
T ss_pred -hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999 667889999999999877655
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.9e-19 Score=191.37 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Ccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~v~~ 214 (391)
+++++++|++..++++++|.+ +|++++|+||||||||||+++|+|+. .|++|+|.++ +..++++++
T Consensus 315 ~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~igy~~Q 382 (638)
T PRK10636 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL------------APVSGEIGLAKGIKLGYFAQ 382 (638)
T ss_pred EEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCCEEEEEecC
Confidence 356778888888999999999 99999999999999999999999999 9999999986 345666655
Q ss_pred ccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
.... ..+.....+..................+..+++. ...+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 383 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~---~LSgGekqRl~La~~l-~~~p~lLlLDE 456 (638)
T PRK10636 383 HQLE--FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR---RFSGGEKARLVLALIV-WQRPNLLLLDE 456 (638)
T ss_pred cchh--hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchh---hCCHHHHHHHHHHHHH-hcCCCEEEEcC
Confidence 3210 0000000000000000000011112334455553 34566677 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 -----D~~~~~~~~~ll~el 307 (391)
|+.....+.++|.++
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc
Confidence 889999999999886
No 329
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=2.4e-19 Score=155.79 Aligned_cols=138 Identities=17% Similarity=0.288 Sum_probs=106.2
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++..+...-|.++|++| +|+++.|+||||||||||+..+.|.+.+. -.-+|+++++++++..++.
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~---------F~~~G~~~l~~~~l~~lPa- 74 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ---------FSCTGELWLNEQRLDMLPA- 74 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC---------cceeeEEEECCeeccccch-
Confidence 466777777777889999999 99999999999999999999999998321 2347999999998877664
Q ss_pred cCCCcceeeeEEEEeccCCCc----cc---------CCcc-----cchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LA---------DTPG-----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~---------Dtpg-----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
..|++++++|+.-.+ +. +..| .....+...++.++.+.+|+ +|||||+-|+++
T Consensus 75 ------~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---tlSGGQrARvaL 145 (213)
T COG4136 75 ------AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---TLSGGQRARVAL 145 (213)
T ss_pred ------hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---hcCcchHHHHHH
Confidence 245666666652110 11 1112 12345667788888999999 999999999999
Q ss_pred ccccccCCCcEEEecCH
Q 016339 278 NNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 278 aralh~~eP~~lllDD~ 294 (391)
-|++ +.+|+.+++|.|
T Consensus 146 ~R~L-la~Pk~lLLDEP 161 (213)
T COG4136 146 LRAL-LAQPKALLLDEP 161 (213)
T ss_pred HHHH-HhCcceeeeCCc
Confidence 9999 999999999954
No 330
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.76 E-value=3.6e-19 Score=179.54 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=115.0
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
++..++++||.+ +|+.++||||||||||||.++|.|.+ .|++|.|++||.++..-.... .-+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w------------~p~~G~VRLDga~l~qWd~e~-----lG~ 410 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW------------PPTSGSVRLDGADLRQWDREQ-----LGR 410 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc------------ccCCCcEEecchhhhcCCHHH-----hcc
Confidence 347899999999 89999999999999999999999999 999999999998886555432 446
Q ss_pred eEEEEecc---CCCcccCCcc-cc--------hHHHHhCChhHHhhhchhHH--------hhcCcccccccccccccccC
Q 016339 225 HVSLLPLS---GGGYLADTPG-FN--------QPSLLKVTKQSLAQTFPEIK--------EMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 225 ~i~~v~~~---~~~~l~Dtpg-~~--------~~~l~~~~~~~l~~~~p~~~--------~~LSgGq~qr~~iaralh~~ 284 (391)
+++|++|+ +.|.+.++-. |. -+.....+..++.-.+|.-. ..||||||||+++|||+ ..
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl-YG 489 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL-YG 489 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH-cC
Confidence 77888887 3344433311 11 11112234455555665533 37999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|.++|+| |.+....+.+.|.+++.+.-.
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~ 524 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCE
Confidence 99999999 778888888888888876544
No 331
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.76 E-value=5.6e-19 Score=184.14 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=104.9
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+... ...+.+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~------------~p~~G~I~~~g~~i~~~~~~~----~~~~~i 329 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL------------PRTSGYVTLDGHEVVTRSPQD----GLANGI 329 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCHHH----HHHCCC
Confidence 4689999999 89999999999999999999999999 999999999997664321100 012345
Q ss_pred EEEeccCC---C----cccCCc------------c---------cchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 227 SLLPLSGG---G----YLADTP------------G---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 227 ~~v~~~~~---~----~l~Dtp------------g---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
+++++... . .+.++- + .....+..+++. ...+.++. .|||||+||++|
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGekqrv~l 406 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG---LLSGGNQQKVAI 406 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh---hCCHHHHHHHHH
Confidence 66655421 0 010000 0 011223444552 34566666 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 407 A~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 407 ARGL-MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHH-hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 9999 9999999999 889999999999998653
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.76 E-value=1.2e-17 Score=147.88 Aligned_cols=141 Identities=28% Similarity=0.365 Sum_probs=103.3
Q ss_pred cccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcC-CeeEEEEcCCccch
Q 016339 73 PVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLGL 150 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g-~~~v~~s~~~~~~L 150 (391)
.+.++|.++.|..+..|.. ....+.++|.. ...++|+++|+||+|+.++++...|...+.+.. +..+.+|..++.++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 5689999999999988743 36678888864 245699999999999998887777877776532 23455676666666
Q ss_pred HHHhhcc----------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCc
Q 016339 151 DSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 151 ~~ls~~i----------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
+.+.-.+ .+..++++|+||+|||||||+|.|... ..+ +..++
T Consensus 84 ~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~----------------------~~~---~~~~g--- 135 (157)
T cd01858 84 GSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV----------------------CKV---APIPG--- 135 (157)
T ss_pred HHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc----------------------eee---CCCCC---
Confidence 5544333 134568999999999999999998751 112 22233
Q ss_pred ceeeeEEEEeccCCCcccCCccc
Q 016339 221 HTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 221 ~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
+|++..++.+..+.+++||||+
T Consensus 136 -~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 -ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred -eeEeEEEEEcCCCEEEEECcCC
Confidence 6777888887766789999985
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.76 E-value=3.3e-19 Score=205.15 Aligned_cols=158 Identities=13% Similarity=0.179 Sum_probs=112.5
Q ss_pred hcCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Ccc
Q 016339 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (391)
Q Consensus 134 ~~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~ 208 (391)
.+.++++.++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|++ +|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~------------~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY------------DPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc------------cCCCCeEEEeCCcc
Confidence 4667899999975 35999999999 89999999999999999999999999 9999999994 565
Q ss_pred ccccccccCCCcceeeeEEEEeccCCC---cccCCc--------------------------------------------
Q 016339 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTP-------------------------------------------- 241 (391)
Q Consensus 209 v~~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtp-------------------------------------------- 241 (391)
+...... +..+++++++|+... .+.++-
T Consensus 450 i~~~~~~-----~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 450 LKDINLK-----WWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred hhhCCHH-----HHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 5433221 123445555554211 111110
Q ss_pred ------------------cc----chHHHHhCChhHHhhhchh--------HHhhcCcccccccccccccccCCCcEEEe
Q 016339 242 ------------------GF----NQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 242 ------------------g~----~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
.. ....+..+++.+....+|. ....|||||+||++||||+ +.+|+++|+
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl-l~~P~ILlL 603 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI-IRNPKILIL 603 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 00 0111222333343333332 1237999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~ 309 (391)
| |+.....+.+.|.++..
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhh
Confidence 9 88999999999998864
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.75 E-value=3.5e-19 Score=187.85 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=107.3
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v 212 (391)
.+++++++|+ +..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++ ..++.+
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v 73 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFNGEARPAPGIKVGYL 73 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCCCEEEEE
Confidence 3578999997 677999999999 89999999999999999999999999 89999998864 346666
Q ss_pred ccccCCCccee--eeEEEEeccCCCc------c---cCCc-c--------------------------cchHHHHhCChh
Q 016339 213 STKSGRGKHTT--RHVSLLPLSGGGY------L---ADTP-G--------------------------FNQPSLLKVTKQ 254 (391)
Q Consensus 213 ~~~~~~~~~tt--r~i~~v~~~~~~~------l---~Dtp-g--------------------------~~~~~l~~~~~~ 254 (391)
++.+....+.| .++.+......+. . ...+ . .....+..+++.
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 66554333322 2221100000000 0 0000 0 000111122221
Q ss_pred HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 255 ~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 154 ~-~~~~~~---~LSgGqkqrv~la~al-~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 154 P-WDADVT---KLSGGERRRVALCRLL-LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred c-ccCchh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC
Confidence 1 234455 8999999999999999 9999999999 888888888888775
No 335
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.75 E-value=2.5e-19 Score=208.23 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=119.8
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.++++.+.|+ +..+++++++.+ +|++++|+|||||||||||++|+|+. .|++|+|+++|.++..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl------------~PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL------------PPTSGTVLVGGKDIET 996 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC------------CCCceEEEECCEECcc
Confidence 34578889995 467999999999 99999999999999999999999999 9999999999987742
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
-.. ...++++++++....+ +.++ .+. ....+..+++.+..+..+. .||||||
T Consensus 997 ~~~------~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~---~LSGGqK 1067 (2272)
T TIGR01257 997 NLD------AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ---DLSGGMQ 1067 (2272)
T ss_pred hHH------HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHH
Confidence 110 1235577777763221 1111 111 1223556677777777787 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||+|+ +.+|+++|+| |+...+.++++|.+++
T Consensus 1068 QRLsLArAL-i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1068 RKLSVAIAF-VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 8999999999999985
No 336
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.75 E-value=8.7e-19 Score=164.12 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=94.8
Q ss_pred cc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCC
Q 016339 156 RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (391)
Q Consensus 156 ~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~ 234 (391)
.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.. ..+.++++++...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~----------~~~~i~~v~q~~~ 59 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI------------PPAKGTVKVAGASPGK----------GWRHIGYVPQRHE 59 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCccchH----------hhCcEEEeccccc
Confidence 34 79999999999999999999999999 9999999999975421 0123444443311
Q ss_pred C------cccCC--------------c-----ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 235 G------YLADT--------------P-----GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 235 ~------~l~Dt--------------p-----g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
. .+.++ + ......+..+++....+..+. .||+||+||++||+|+ +.+|+++
T Consensus 60 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LS~G~~qrv~laral-~~~p~ll 135 (223)
T TIGR03771 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG---ELSGGQRQRVLVARAL-ATRPSVL 135 (223)
T ss_pred ccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh---hCCHHHHHHHHHHHHH-hcCCCEE
Confidence 1 00000 0 011222444555555666676 8999999999999999 9999999
Q ss_pred Eec------CHHHHHHHHHHHHHHHHH
Q 016339 290 VKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 290 llD------D~~~~~~~~~ll~el~~~ 310 (391)
|+| |+.....+.+++.++..+
T Consensus 136 ilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 136 LLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 999 889999999999998653
No 337
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.2e-19 Score=183.95 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=102.6
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... ...+.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~~----~~~~~ 324 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR------------EKSAGTITLHGKKINNHNANE----AINHG 324 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC------------cCCccEEEECCEECCCCCHHH----HHHCC
Confidence 35899999999 89999999999999999999999999 999999999987664322110 00112
Q ss_pred EEEEeccCC-------Ccc-----cC-------Ccc---------cchHHHHhCChh-HHhhhchhHHhhcCcccccccc
Q 016339 226 VSLLPLSGG-------GYL-----AD-------TPG---------FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 226 i~~v~~~~~-------~~l-----~D-------tpg---------~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
++++++... ..+ .+ ..+ .....+..+++. ...+..|. .||||||||++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrv~ 401 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG---SLSGGNQQKVI 401 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc---cCCcHHHHHHH
Confidence 333332210 000 00 000 011223344442 34566677 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+++ +.+|+++|+| |+.....+.+++.++...
T Consensus 402 la~al-~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~ 440 (491)
T PRK10982 402 IGRWL-LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440 (491)
T ss_pred HHHHH-hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC
Confidence 99999 9999999999 889999999999998754
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.2e-19 Score=184.39 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=103.0
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++....... .....+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~------------~p~~G~i~~~g~~~~~~~~~~----~~~~~i 330 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT------------RRTAGQVYLDGKPIDIRSPRD----AIRAGI 330 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC------------cCCCceEEECCEECCCCCHHH----HHhCCC
Confidence 4789999999 99999999999999999999999999 999999999987653211000 011223
Q ss_pred EEEeccCC---C----cccCC------c-----c----------cchHHHHhCCh-hHHhhhchhHHhhcCccccccccc
Q 016339 227 SLLPLSGG---G----YLADT------P-----G----------FNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 227 ~~v~~~~~---~----~l~Dt------p-----g----------~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
+++++... . .+.++ + + .....+..+++ .+..++.+. .||||||||++|
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGq~qrl~l 407 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM---NLSGGNQQKAIL 407 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc---cCCHHHHHHHHH
Confidence 34333210 0 00000 0 0 01123344555 244566677 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+++ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 408 a~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 408 GRWL-SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred HHHH-ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 9999 9999999999 889999999999998754
No 339
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.75 E-value=4.5e-19 Score=190.24 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=119.4
Q ss_pred CCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++++++|.. ..++++++|++ +|++++|+||||||||||+++|+|+. +|++|++.++|.++.
T Consensus 6 ~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD------------KPTSGTYRVAGQDVA 73 (648)
T ss_pred EEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcC
Confidence 45788899953 36899999999 99999999999999999999999999 999999999998776
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
..+.... .....+.+++++++...+ +.++ .+. ....+..+++.+..+..|. .||+||
T Consensus 74 ~~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~---~LS~Gq 149 (648)
T PRK10535 74 TLDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS---QLSGGQ 149 (648)
T ss_pred cCCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcc---cCCHHH
Confidence 5432110 000124577777764321 1111 011 1122334566666677777 999999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++|+|+ +.+|+++|+| |+...+.+.+++.+++++
T Consensus 150 ~qrv~LAraL-~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~ 193 (648)
T PRK10535 150 QQRVSIARAL-MNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999 889999999999998653
No 340
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=9.6e-19 Score=169.76 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=101.9
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++. ...+++++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++| .++.+++.
T Consensus 42 i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~------------~p~~G~I~i~g-~i~yv~q~ 106 (282)
T cd03291 42 FSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL------------EPSEGKIKHSG-RISFSSQF 106 (282)
T ss_pred EEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC-EEEEEeCc
Confidence 4556554 456999999999 89999999999999999999999999 99999999987 46677765
Q ss_pred cCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCC
Q 016339 216 SGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEP 286 (391)
Q Consensus 216 ~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP 286 (391)
+..++.+. .++.+.. .. . .......+..+++.+....+|.. ...||+||+||++||+|+ +.+|
T Consensus 107 ~~l~~~tv~enl~~~~-----~~-~-~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL-~~~p 178 (282)
T cd03291 107 SWIMPGTIKENIIFGV-----SY-D-EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV-YKDA 178 (282)
T ss_pred ccccccCHHHHhhccc-----cc-C-HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH-hcCC
Confidence 43332211 2221100 00 0 00001112223334433333321 138999999999999999 9999
Q ss_pred cEEEec------CHHHHHHHHHH-HHHHH
Q 016339 287 GCVVKG------DWERYQYYFQL-LDEIR 308 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~l-l~el~ 308 (391)
+++|+| |+.....+.+. +.++.
T Consensus 179 ~iLiLDEPt~gLD~~~~~~l~~~ll~~~~ 207 (282)
T cd03291 179 DLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHhh
Confidence 999999 78888877764 44543
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=6.4e-19 Score=188.71 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=107.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~ 215 (391)
++++++|++..+++++||.+ +|++++|+|||||||||||++|+|+. +|++|+|+++. ..++.+++.
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~i~y~~q~ 390 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL------------QADSGRIHCGTKLEVAYFDQH 390 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCCcEEEEEeCc
Confidence 56788898888999999999 89999999999999999999999999 99999999842 235666654
Q ss_pred c-CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 216 S-GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 216 ~-~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
. ...++.| .++.+... .....+........+..++.. ...+..+. .|||||+||++||+++ +.+|+++|+
T Consensus 391 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgGekqRl~la~al-~~~p~lLlL 464 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVK---ALSGGERNRLLLARLF-LKPSNLLIL 464 (635)
T ss_pred ccccCCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhh---hCCHHHHHHHHHHHHH-hcCCCEEEE
Confidence 2 1222222 11111000 000000001112223344442 34566666 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEI 307 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el 307 (391)
| |+.....+.+++.++
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~ 486 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY 486 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC
Confidence 9 888888888888775
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.75 E-value=1.6e-17 Score=144.69 Aligned_cols=133 Identities=32% Similarity=0.391 Sum_probs=102.5
Q ss_pred ccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccch
Q 016339 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L 150 (391)
..++++|.+++|+++..|... ...+.+++.... .++++++|+||+|+.++++...|...+.+.+++.+.+|..++..
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~- 84 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA- 84 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-
Confidence 467899999999999888543 347788886432 58999999999999988777788888888888888888765432
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEe
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~ 230 (391)
.++++|+||+|||||+|.|.+... ..++..++ +|++...+.
T Consensus 85 ----------~~~~~G~~~vGKstlin~l~~~~~-------------------------~~~~~~~~----~~~~~~~~~ 125 (141)
T cd01857 85 ----------TIGLVGYPNVGKSSLINALVGKKK-------------------------VSVSATPG----KTKHFQTIF 125 (141)
T ss_pred ----------EEEEECCCCCCHHHHHHHHhCCCc-------------------------eeeCCCCC----cccceEEEE
Confidence 799999999999999999998651 12333344 345555666
Q ss_pred ccCCCcccCCcccch
Q 016339 231 LSGGGYLADTPGFNQ 245 (391)
Q Consensus 231 ~~~~~~l~Dtpg~~~ 245 (391)
.+.+.++.||||+..
T Consensus 126 ~~~~~~i~DtpG~~~ 140 (141)
T cd01857 126 LTPTITLCDCPGLVF 140 (141)
T ss_pred eCCCEEEEECCCcCC
Confidence 665678999999864
No 343
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.74 E-value=8.6e-19 Score=183.21 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=103.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeE
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i 226 (391)
.+++++||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++...+... .....+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~~----~~~~~i 340 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR------------PARGGRIMLNGKEINALSTAQ----RLARGL 340 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEECCCCCHHH----HHhCCc
Confidence 3689999999 89999999999999999999999999 899999999987654322110 011234
Q ss_pred EEEeccC---CCc----ccCC--------------cc----cchHHHHhCChh-HHhhhchhHHhhcCcccccccccccc
Q 016339 227 SLLPLSG---GGY----LADT--------------PG----FNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 227 ~~v~~~~---~~~----l~Dt--------------pg----~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iara 280 (391)
+++++.. +.+ +.++ +. .....+..+++. ...+..+. .|||||+||++||+|
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LSgG~kqrl~la~a 417 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR---TLSGGNQQKVLIAKC 417 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc---cCCcHHHHHHHHHHH
Confidence 5555431 000 0000 00 011223445554 44566666 999999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+ +.+|+++|+| |+.....+.++|.++..+
T Consensus 418 l-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~ 452 (510)
T PRK15439 418 L-EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452 (510)
T ss_pred H-hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC
Confidence 9 9999999999 889999999999998764
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=3e-18 Score=156.87 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=106.8
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
.+.+|++++++| +|+++.++|.||||||||+|+|+|.. .|++|.|.++|.+|...+.... ..
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l------------~~t~G~I~Idg~dVtk~~~~~R-----A~ 80 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL------------KPTSGQILIDGVDVTKKSVAKR-----AN 80 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc------------ccCCceEEECceecccCCHHHH-----hh
Confidence 356899999999 99999999999999999999999999 9999999999999876665321 11
Q ss_pred eEEEEeccCC------Cc------ccCCc----ccch-----------HHHH--hCChhHHhhhchhHHhhcCccccccc
Q 016339 225 HVSLLPLSGG------GY------LADTP----GFNQ-----------PSLL--KVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 225 ~i~~v~~~~~------~~------l~Dtp----g~~~-----------~~l~--~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.++-++|+.. .. +.+.. |+.. ..+. ..+++..++.... .|||||||-+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig---lLSGGQRQal 157 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG---LLSGGQRQAL 157 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh---hccchHHHHH
Confidence 2222333310 00 11111 1110 0111 2233444444444 8999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+++.|. ++.|+++++| ||.....++++-.++.++.+.
T Consensus 158 sL~MAt-l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 158 SLLMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred HHHHHh-cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 999999 9999999999 999999999999988766544
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=1e-18 Score=187.22 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc-ccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-VGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~-v~~v~ 213 (391)
.+++++++|++..+++++||.+ +|++++|+||||||||||+++|+|+. .|++|+|.+++.. ++.++
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~------------~p~~G~I~~~~~~~~~~l~ 72 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV------------LLDDGRIIYEQDLIVARLQ 72 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEeCCCCEEEEec
Confidence 4578999999888999999999 89999999999999999999999999 9999999987632 33433
Q ss_pred cccCCCcceeeeEEEEeccC--CC----------------cccC-----------------------CcccchHHHHhCC
Q 016339 214 TKSGRGKHTTRHVSLLPLSG--GG----------------YLAD-----------------------TPGFNQPSLLKVT 252 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~--~~----------------~l~D-----------------------tpg~~~~~l~~~~ 252 (391)
+.+.. .....+++.. +. ...+ ........+..++
T Consensus 73 q~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 73 QDPPR-----NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred cCCCC-----CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 32110 0000000000 00 0000 0000111222333
Q ss_pred hhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 253 KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 253 ~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+. .+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++.
T Consensus 148 l~--~~~~~~---~LSgGekqRv~LAraL-~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 148 LD--PDAALS---SLSGGWLRKAALGRAL-VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred CC--CCCchh---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence 32 234455 8999999999999999 9999999999 8889998888888763
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=4e-18 Score=154.42 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=92.2
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
...+++++||++ +|++++|+||||||||||||+|.+ ++|++.+++... .. ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~----~~------~~~ 60 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLP----KF------SRN 60 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCccc----cc------ccc
Confidence 456899999999 899999999999999999999853 256676654311 00 112
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHH-hhhchhHHhhcCcccccccccccccccCC--CcEEEec------CHH
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKG------DWE 295 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~e--P~~lllD------D~~ 295 (391)
.+.++++ ...+..+++... .+..+. .||+||+||++||+|+ +.+ |+++|+| |+.
T Consensus 61 ~~~~~~q-------------~~~l~~~~L~~~~~~~~~~---~LSgGq~qrl~laral-~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 61 KLIFIDQ-------------LQFLIDVGLGYLTLGQKLS---TLSGGELQRVKLASEL-FSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred cEEEEhH-------------HHHHHHcCCCccccCCCcC---cCCHHHHHHHHHHHHH-hhCCCCCEEEEeCCcccCCHH
Confidence 3444443 244566666543 566677 9999999999999999 999 9999999 888
Q ss_pred HHHHHHHHHHHHHH
Q 016339 296 RYQYYFQLLDEIRI 309 (391)
Q Consensus 296 ~~~~~~~ll~el~~ 309 (391)
..+.+.+++.++.+
T Consensus 124 ~~~~l~~~l~~~~~ 137 (176)
T cd03238 124 DINQLLEVIKGLID 137 (176)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 347
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.73 E-value=2.7e-18 Score=198.41 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|++|+++|.. ..+|+++||.| +|+.+||+|+||||||||+++|+|++ + .+|+|.++|.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~------------~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL------------S-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEccc
Confidence 457999999964 57999999999 89999999999999999999999998 6 78999999999987
Q ss_pred cccccCCCcceeeeEEEEeccC---CCcccCC--cc--cc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADT--PG--FN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt--pg--~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
++... .++.+++++|+. .+.+.++ |. .. ...+..+++.+.....|. ....|||||+
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 76543 567899999983 3444433 21 12 223445555554444442 1236999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++||||+ +.+|+++|+| |.+....+++.|.+..
T Consensus 1360 QrL~LARAL-Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~ 1400 (1490)
T TIGR01271 1360 QLMCLARSI-LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400 (1490)
T ss_pred HHHHHHHHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 999999999 9999999999 8888888888887753
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=1.7e-18 Score=183.65 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=110.2
Q ss_pred eEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------ec
Q 016339 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FE 205 (391)
Q Consensus 139 ~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~~ 205 (391)
.++++|+.. .+|++|+ .+ +|++++|+||||||||||+++|+|++ .|++|+|. |+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l------------~p~~G~i~~~~~~~~~~~~~~ 144 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL------------IPNLGDYEEEPSWDEVLKRFR 144 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCccccCCCcHHHHHHHhC
Confidence 467889864 6899999 67 89999999999999999999999999 99999997 88
Q ss_pred CccccccccccCCCc-ceeeeEEEEeccC---CCcccC------CcccchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 206 DQRVGEVSTKSGRGK-HTTRHVSLLPLSG---GGYLAD------TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 206 g~~v~~v~~~~~~~~-~ttr~i~~v~~~~---~~~l~D------tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
|.++...+....... ......+++++.. .+.+.+ ..+.....+..+++....++.+. .|||||+||+
T Consensus 145 G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~qrv 221 (590)
T PRK13409 145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDIS---ELSGGELQRV 221 (590)
T ss_pred ChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHH
Confidence 877644322110000 0111122222211 111111 11122334555667666777777 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+++ +.+|+++|+| |+.....+.+++.++.+
T Consensus 222 ~ia~al-~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~ 260 (590)
T PRK13409 222 AIAAAL-LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260 (590)
T ss_pred HHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Confidence 999999 9999999999 88999999999999865
No 349
>PLN03211 ABC transporter G-25; Provisional
Probab=99.73 E-value=1.2e-18 Score=186.97 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=108.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCcccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVST 214 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~~v~~v~~ 214 (391)
+++.++|+++.+|+++|+.+ +|++++|+||||||||||+|+|+|.. +| .+|+|.++|.++..
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~------------~~~~~sG~I~inG~~~~~--- 136 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI------------QGNNFTGTILANNRKPTK--- 136 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEEEECCEECch---
Confidence 34566788888999999999 89999999999999999999999998 66 48999999976521
Q ss_pred ccCCCcceeeeEEEEeccCCC----cccCC---------cc-c--------chHHHHhCChhHHhhhchh--HHhhcCcc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGG----YLADT---------PG-F--------NQPSLLKVTKQSLAQTFPE--IKEMLKAN 270 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~----~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~--~~~~LSgG 270 (391)
. ..+.+++++++... .+.++ |. . .+..+..+++.+..+.... ....||||
T Consensus 137 ~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgG 210 (659)
T PLN03211 137 Q------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210 (659)
T ss_pred h------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChh
Confidence 0 12345666655211 11111 10 0 1112333444443322110 12279999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+||++||+++ +.+|+++++| |......+.++|.++.++
T Consensus 211 erqRv~ia~aL-~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 211 ERKRVSIAHEM-LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred hhhHHHHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 889999999999998753
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.6e-18 Score=155.65 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=115.1
Q ss_pred CCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++++.++..++ .+|++||+++ +|++.+|+||||||||||.++|+|... +++++|+|.|+|+++..++
T Consensus 5 ~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~----------Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK----------YEVTEGEILFDGEDILELS 74 (251)
T ss_pred EEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC----------ceEecceEEECCcccccCC
Confidence 357888999885 9999999999 899999999999999999999999862 3889999999999998887
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchH--------------------------HHHhCChhH-HhhhchhHHhh
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP--------------------------SLLKVTKQS-LAQTFPEIKEM 266 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~--------------------------~l~~~~~~~-l~~~~p~~~~~ 266 (391)
.... ....+.+.+|. ..+.||.... .+..+++.. +++++ +..-
T Consensus 75 ~~ER----Ar~GifLafQ~----P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~--vN~G 144 (251)
T COG0396 75 PDER----ARAGIFLAFQY----PVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERY--VNEG 144 (251)
T ss_pred HhHH----HhcCCEEeecC----CccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcc--cCCC
Confidence 6532 23444444443 1122222111 111222221 22221 2236
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||++|..|+..+ +.+|+++|+| |....+.+-+.+.+++...
T Consensus 145 FSGGEkKR~EilQ~~-~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~ 194 (251)
T COG0396 145 FSGGEKKRNEILQLL-LLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194 (251)
T ss_pred cCcchHHHHHHHHHH-hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC
Confidence 899999999999999 9999999999 7888888888888887653
No 351
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.73 E-value=8.1e-19 Score=173.52 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=95.4
Q ss_pred EEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc----ccC
Q 016339 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LAD 239 (391)
Q Consensus 164 LvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l~D 239 (391)
|+||||||||||+++|+|+. +|++|+|.++|.++...+. ..++++++++....+ +.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE------------QPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 68999999999999999999 9999999999987643322 134577777764322 111
Q ss_pred Cc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHH
Q 016339 240 TP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQ 298 (391)
Q Consensus 240 tp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~ 298 (391)
+- +. ....+..+++..+.+++|. .|||||+||++||||+ +.+|+++|+| |+....
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qRvalaraL-~~~p~lllLDEP~s~LD~~~~~ 137 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH---QLSGGQQQRVALARAL-VFKPKILLLDEPLSALDKKLRD 137 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCCccCCHHHHH
Confidence 11 11 1123445566666777787 9999999999999999 9999999999 889999
Q ss_pred HHHHHHHHHHHH
Q 016339 299 YYFQLLDEIRIR 310 (391)
Q Consensus 299 ~~~~ll~el~~~ 310 (391)
.+.++|.++.++
T Consensus 138 ~l~~~l~~l~~~ 149 (325)
T TIGR01187 138 QMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.73 E-value=2.3e-18 Score=185.10 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=109.6
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~ 211 (391)
+.+++++++|. +..+++++||++ +|++++|+||||||||||+++|+|++ +|++|+|.+++ ..++.
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~------------~~~~G~i~~~~~~~i~~ 519 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW------------PVYGGRLTKPAKGKLFY 519 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEeecCCCcEEE
Confidence 45788999885 447999999999 89999999999999999999999999 89999998864 34666
Q ss_pred cccccCCCccee-eeEEEEeccCCCcccCCccc----chHHHHhCChhHHhhhch------hHHhhcCcccccccccccc
Q 016339 212 VSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGF----NQPSLLKVTKQSLAQTFP------EIKEMLKANEPAKCSFNNC 280 (391)
Q Consensus 212 v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~----~~~~l~~~~~~~l~~~~p------~~~~~LSgGq~qr~~iara 280 (391)
+++.+.....+- .++.+.. .... . ..++. ....+..+++.++.+..+ +-...|||||+||++|||+
T Consensus 520 v~Q~~~l~~~tv~eni~~~~-~~~~-~-~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTLGTLRDQIIYPD-SSED-M-KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCCcCHHHHHhcCC-Chhh-h-hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 777654433321 2332210 0000 0 00111 123344556655544421 0113899999999999999
Q ss_pred cccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 281 LHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 281 lh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
+ +++|+++|+| |+.....+.+++.+
T Consensus 597 l-~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 597 F-YHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred H-HcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9 9999999999 78888777777655
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=1.7e-18 Score=187.07 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred CeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-cccccc
Q 016339 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVS 213 (391)
Q Consensus 137 ~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-~v~~v~ 213 (391)
+++++++|++ ..+++++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.+++. .++.++
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll------------~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL------------QPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCceEEECCceeEEEEe
Confidence 3567788854 46899999999 89999999999999999999999999 999999988653 355555
Q ss_pred cccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+........+.+..+... ..+...........+..+++. ...+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 579 Q~~~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~---~LSgGqkqRvaLAraL-~~~p~lLLLD 652 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMM--RCFPGVPEQKLRAHLGSFGVTGNLALQPMY---TLSGGQKSRVAFAKIT-FKKPHILLLD 652 (718)
T ss_pred ccccccCCcchhHHHHHH--HhcCCCCHHHHHHHHHHCCCChHHhcCCcc---ccCHHHHHHHHHHHHH-hcCCCEEEEc
Confidence 432100000000000000 000000011122345556664 35566677 9999999999999999 9999999999
Q ss_pred ------CHHHHHHHHHHHHHH
Q 016339 293 ------DWERYQYYFQLLDEI 307 (391)
Q Consensus 293 ------D~~~~~~~~~ll~el 307 (391)
|+.....+.+.+.+.
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc
Confidence 777777776666543
No 354
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=2.6e-18 Score=162.08 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
...++.+|||+| +|++++++|||||||||+|++|.|++ .|++|.|.++|...-.-.+. .-+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll------------~p~~G~v~V~G~~Pf~~~~~------~~~ 97 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL------------LPTSGKVRVNGKDPFRRREE------YLR 97 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc------------ccCCCeEEecCcCcchhHHH------HHH
Confidence 345899999999 89999999999999999999999999 99999999998653220000 011
Q ss_pred eEEEEeccCCCc---------------ccCCccc--c---hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 225 HVSLLPLSGGGY---------------LADTPGF--N---QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 225 ~i~~v~~~~~~~---------------l~Dtpg~--~---~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
++++++-...+. +++.|.. . ....+.++++........ .||-|||.||.+|.+| ++
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr---~LSlGqRmraeLaaaL-Lh 173 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVR---KLSLGQRMRAELAAAL-LH 173 (325)
T ss_pred HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhh---hccchHHHHHHHHHHh-cC
Confidence 122211111111 2222221 1 111223455555555455 8999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 285 EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|+++++| |......+.+++++.++..+.
T Consensus 174 ~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a 208 (325)
T COG4586 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208 (325)
T ss_pred CCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCc
Confidence 99999999 788999999999999877654
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.8e-18 Score=168.20 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=119.3
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.-|.++.+.|. ...+|.++||.+ .|++++++||||+||||++++|.+++ ++.+|.|.++|+++..+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy------------D~~sG~I~id~qdir~v 330 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY------------DVNSGSITIDGQDIRDV 330 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh------------CCcCceEEEcchhHHHh
Confidence 44678888885 557999999999 89999999999999999999999999 99999999999999877
Q ss_pred ccccCCCcceeeeEEEEeccCCC---ccc-----CCcccchH----HHHhCChhHHhhhchhHHh--------hcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLA-----DTPGFNQP----SLLKVTKQSLAQTFPEIKE--------MLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~-----Dtpg~~~~----~l~~~~~~~l~~~~p~~~~--------~LSgGq~ 272 (391)
.+.. .++.++++||+.-. ++. -.|..... ..+...+.++...+|+..+ .||||||
T Consensus 331 tq~s-----lR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 331 TQQS-----LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHH-----HHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 6653 56778888887221 111 11222222 2233344555566666443 6899999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||++|||++ +.+|.++++| |....+.++..|+++.
T Consensus 406 qrvaiar~i-lk~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 406 QRVAIARTI-LKNPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred HHHHHHHHH-hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 999999999 9999999999 5666677777777765
No 356
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=2.5e-18 Score=160.39 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.+....+|+||||++ +|+.++|||+||||||||+++|+|.+ +|++|+|.+.|.-..-+.-..+.-+.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~------------~Pt~G~v~v~G~v~~li~lg~Gf~pe 103 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY------------KPTSGKVKVTGKVAPLIELGAGFDPE 103 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc------------CCCCceEEEcceEehhhhcccCCCcc
Confidence 445567999999999 99999999999999999999999999 99999999987533222222222222
Q ss_pred ee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------C
Q 016339 222 TT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------D 293 (391)
Q Consensus 222 tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D 293 (391)
+| +|+.+..+-.|..-.+.....+..++-.++.++.+..-. .+|-||+-|++|+-++ ..+|+|+|+| |
T Consensus 104 lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pvk---tYSSGM~aRLaFsia~-~~~pdILllDEvlavGD 179 (249)
T COG1134 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK---TYSSGMYARLAFSVAT-HVEPDILLLDEVLAVGD 179 (249)
T ss_pred cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchh---hccHHHHHHHHHhhhh-hcCCCEEEEehhhhcCC
Confidence 33 333222211121111111112222222234445555444 8999999999999999 7899999999 6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhhh----ccccccccccccc
Q 016339 294 WERYQYYFQLLDEIRIREEF-QLRTFG----TKREGDVRYKVGD 332 (391)
Q Consensus 294 ~~~~~~~~~ll~el~~~~~~-~~~~~~----~~~~~~~~~~~~~ 332 (391)
+.-++.-.+.+.++.++... .+.+++ ...|.+..+...+
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 66666666667776444433 222222 2345555554433
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.4e-18 Score=151.21 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=111.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc-----ccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-----RVG 210 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~-----~v~ 210 (391)
+..++++|+...+.++|||.+ +|++.+|||.||||||||+++|++.. .|++|+|.+.-. ++-
T Consensus 9 V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl------------~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 9 VSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL------------TPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc------------CCCCCeEEEEcCCCCchhHh
Confidence 456778899999999999999 99999999999999999999999999 999999987531 222
Q ss_pred ccccccCCCcceeeeEEEEeccC----------CCcccCC--------cc-c---chHHHHhCChh-HHhhhchhHHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG----------GGYLADT--------PG-F---NQPSLLKVTKQ-SLAQTFPEIKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~----------~~~l~Dt--------pg-~---~~~~l~~~~~~-~l~~~~p~~~~~L 267 (391)
.+++.. +..-.++..+++.|+. ++.+-+. -| + ...++..+++. .-.+..|. .+
T Consensus 77 ~msEae-RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Pr---tF 152 (258)
T COG4107 77 TMSEAE-RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPR---TF 152 (258)
T ss_pred hhchHH-HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccc---cc
Confidence 223221 1111223445555541 1111110 00 1 12234444443 22345676 99
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
||||+||+.|||-+ +..|.++++| |..-...+++++..+..+.
T Consensus 153 SGGMqQRLQiARnL-Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l 201 (258)
T COG4107 153 SGGMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred chHHHHHHHHHHHh-ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999 7788899999999887554
No 358
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=5.8e-18 Score=152.86 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=108.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~ 213 (391)
..+.+++||++..+|+++||.+ .|+.-+||||||+||||++-.|.|.. .|+.|+++|+| .++...+
T Consensus 7 ~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt------------rp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT------------RPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred EEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC------------CCCcceEEEcCchhhccCC
Confidence 3478999999999999999999 99999999999999999999999999 99999999998 6665444
Q ss_pred cc----cCCCcceeeeEEEEe----cc------CCCc---------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 214 TK----SGRGKHTTRHVSLLP----LS------GGGY---------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 214 ~~----~~~~~~ttr~i~~v~----~~------~~~~---------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
.. .|.++....-..+-. .+ .... ..+.....+..+...++.+..+.... .||.|
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~---~LSHG 151 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA---LLSHG 151 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---hhccc
Confidence 32 122221110000000 00 0000 00001122333445555555555444 99999
Q ss_pred cccccccccccccCCCcEEEecCH------HHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllDD~------~~~~~~~~ll~el~~ 309 (391)
|+|++.|++.+ +.+|.++++|.| +.....-+++..++.
T Consensus 152 qKQwLEIGMll-~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~ 195 (249)
T COG4674 152 QKQWLEIGMLL-AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195 (249)
T ss_pred hhhhhhhheee-ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999933 445566677777654
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.69 E-value=5.4e-16 Score=137.04 Aligned_cols=135 Identities=30% Similarity=0.389 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-cCCeeEEEEcCCccchHHHhh
Q 016339 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 78 D~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~-~g~~~v~~s~~~~~~L~~ls~ 155 (391)
|.+++|+.+..|... ...+.+ ..+...++|+++|+||+|++++++...|...++. +++..+.+|..++.+++.+.-
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 788899998877443 233342 3446678999999999999988777778655654 456778999988877776544
Q ss_pred cc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 156 RL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 156 ~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
.+ .+..++++|.+|+|||||+|.|.+... .. .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~----------------------~~-------~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK----------------------LK-------VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc----------------------cc-------cc
Confidence 22 467899999999999999999999761 11 23
Q ss_pred CCcceeeeEEEEeccCCCcccCCccc
Q 016339 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
.++++|+....+....+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 34558877777777666679999985
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-17 Score=149.96 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=110.1
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++-+....+.+++|.+ .|+.+.|.||||+||||||++|+|+. .|++|+|++++..+.......
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl------------~p~~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL------------RPDAGEVYWQGEPIQNVRESY 73 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc------------CCCCCeEEecCCCCccchhhH
Confidence 45566667778899999999 99999999999999999999999999 999999999987776554321
Q ss_pred -----------CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc
Q 016339 217 -----------GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 217 -----------~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+..+..| +|..|... +.+. . +.......+..+++..+.+.... +||-|||+|+++||.. +
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~-~~~~-~-~~~~i~~Al~~vgL~g~~dlp~~---~LSAGQqRRvAlArL~-l 146 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQR-FHGS-G-NAATIWEALAQVGLAGLEDLPVG---QLSAGQQRRVALARLW-L 146 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHH-HhCC-C-chhhHHHHHHHcCcccccccchh---hcchhHHHHHHHHHHH-c
Confidence 1111111 11111110 1111 0 11223355677888888887777 9999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
..+++-|+| |.+....+-.++.+-.
T Consensus 147 s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 147 SPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 999999999 6677777666666533
No 361
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.65 E-value=4.4e-17 Score=174.06 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=104.7
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC---CCCcceecCccccccccccCCCc
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEVSTKSGRGK 220 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p---~~G~I~~~g~~v~~v~~~~~~~~ 220 (391)
+++.+|+++++.+ +|++++|+|||||||||||++|+|.. .| .+|+|.++|.++...
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~------------~~~~~~~G~i~~~g~~~~~~-------- 95 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAK-------- 95 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEECCHH--------
Confidence 4567999999999 89999999999999999999999987 55 479999999765310
Q ss_pred ceeeeEEEEeccCCC----cccC---------Ccc---------cchHHHHhCChhHHhhhchh---HHhhcCccccccc
Q 016339 221 HTTRHVSLLPLSGGG----YLAD---------TPG---------FNQPSLLKVTKQSLAQTFPE---IKEMLKANEPAKC 275 (391)
Q Consensus 221 ~ttr~i~~v~~~~~~----~l~D---------tpg---------~~~~~l~~~~~~~l~~~~p~---~~~~LSgGq~qr~ 275 (391)
...+.+++++++... .+.+ .|. .....+..+++.+..+.... ....||||||||+
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 012345555554211 1111 111 11223445555555555443 1236999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++ +.+|+++++| |......+++.++++...
T Consensus 176 sia~aL-~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~ 215 (617)
T TIGR00955 176 AFASEL-LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215 (617)
T ss_pred HHHHHH-HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 788999999999998754
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=7.7e-17 Score=174.25 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=102.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.| +|++++|||||||||||||++|+|.... ..|+.|+|.+.++.+....
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~---------g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID---------GIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---------CCCCCCEEEEEeccCCCCC
Confidence 45688999999888999999999 8999999999999999999999997411 1578888876554321000
Q ss_pred --------c-ccCCCcceeeeEEEEeccC------------CCcccCCc------------------------ccchHHH
Q 016339 214 --------T-KSGRGKHTTRHVSLLPLSG------------GGYLADTP------------------------GFNQPSL 248 (391)
Q Consensus 214 --------~-~~~~~~~ttr~i~~v~~~~------------~~~l~Dtp------------------------g~~~~~l 248 (391)
. ...........+.++++.. .......+ ......+
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 0000000000011111100 00000000 0011122
Q ss_pred HhCChh-HHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 249 LKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 249 ~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
..+++. ...+..+. .|||||+||++||+++ +.+|+++|+| |+.....+.++|.++
T Consensus 329 ~~lgl~~~~~~~~~~---~LSgG~k~rv~LA~aL-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 329 AGLSFTPEMQVKATK---TFSGGWRMRIALARAL-FIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred HHCCCChHHHhCchh---hCCHHHHHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 233432 33455566 9999999999999999 9999999999 888988988888875
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.65 E-value=4.9e-17 Score=186.88 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=112.7
Q ss_pred CCeeEEEEcC----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 136 g~~~v~~s~~----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++++.++|. +..+|++||+.+ +|++++|+||||||||||+|+|+|+..++ .|++|+|.++|.++.
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g---------~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG---------VITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---------CcceeEEEECCEECC
Confidence 3577788874 457999999999 89999999999999999999999998211 378999999998763
Q ss_pred ccccccCCCcceeeeEEEEeccCC----CcccCC---------cc-c--------chHHHHhCChhHHhhhchh-HHhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGG----GYLADT---------PG-F--------NQPSLLKVTKQSLAQTFPE-IKEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~----~~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~-~~~~L 267 (391)
. . ..+.+++++|+.. ..+.++ |. . .+..+..+++.+.++..+. -...|
T Consensus 832 ~---~------~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~L 902 (1394)
T TIGR00956 832 S---S------FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGL 902 (1394)
T ss_pred h---h------hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCC
Confidence 1 1 2345677776521 111111 10 0 1123344455555554432 01169
Q ss_pred CcccccccccccccccCCCc-EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPG-CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~-~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||||++||+++ +.+|+ ++++| |......++++|+++..+
T Consensus 903 SgGqrqRl~Ia~aL-~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~ 951 (1394)
T TIGR00956 903 NVEQRKRLTIGVEL-VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951 (1394)
T ss_pred CHHHhhHHHHHHHH-HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999 99997 99999 889999999999998654
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.64 E-value=6.1e-17 Score=168.76 Aligned_cols=153 Identities=23% Similarity=0.202 Sum_probs=101.8
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~ 213 (391)
..++++++|+....++++++.+ +|+.+||||+|||||||||++|+|.. .|++|+|...+ ..++.++
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~------------~~~~G~i~~~~~~~v~~l~ 72 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL------------EPDSGEVTRPKGLRVGYLS 72 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC------------cCCCCeEeecCCceEEEeC
Confidence 3578899999999999999999 99999999999999999999999999 99999998764 5788888
Q ss_pred cccCCCccee-ee-EEEEecc-------CCC-c--ccC--------------------CcccchHHHHhCChhHHhhhch
Q 016339 214 TKSGRGKHTT-RH-VSLLPLS-------GGG-Y--LAD--------------------TPGFNQPSLLKVTKQSLAQTFP 261 (391)
Q Consensus 214 ~~~~~~~~tt-r~-i~~v~~~-------~~~-~--l~D--------------------tpg~~~~~l~~~~~~~l~~~~p 261 (391)
|.+......| .. +...... ... + ..+ ........+..++.... +...
T Consensus 73 Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~ 151 (530)
T COG0488 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV 151 (530)
T ss_pred CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence 7655433211 00 0000000 000 0 000 00001111222222222 2333
Q ss_pred hHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLD 305 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~ 305 (391)
. .|||||+.|+++|++| ..+|+++++| |.+...-+-+.|.
T Consensus 152 ~---~LSGG~r~Rv~LA~aL-~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 152 S---SLSGGWRRRVALARAL-LEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred h---hcCHHHHHHHHHHHHH-hcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 3 8999999999999999 9999999999 5554444444443
No 365
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.63 E-value=1.5e-16 Score=184.45 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=107.2
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~------------~~~~G~i~~~g-~i~y 703 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVHMKG-SVAY 703 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------ccCCcEEEECC-EEEE
Confidence 556889999964 46899999999 99999999999999999999999999 99999999987 4777
Q ss_pred cccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCcccccccccccccc
Q 016339 212 VSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 212 v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh 282 (391)
++|.+.....+- .++.+. . ..+ +......+...++.+....+| +....||||||||++||||+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g-----~-~~~-~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl- 775 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFG-----K-ALN-EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV- 775 (1522)
T ss_pred EcCCccccCCcHHHHhhcC-----C-ccC-HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH-
Confidence 877655433221 333221 0 011 111111222222222222222 12238999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
..+|+++++| |+.....+.+.+.+
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 9999999999 77788888777754
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=8.6e-17 Score=142.49 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=99.4
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC--ccccccccccCCCc-cee
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--QRVGEVSTKSGRGK-HTT 223 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g--~~v~~v~~~~~~~~-~tt 223 (391)
.+++++||.+ .||++++-||||+||||||++|.+-+ .|++|+|++.. ..+..+...+..-- -..
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY------------~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr 92 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY------------LPDEGQILVRHEGEWVDLVTAEPREVLEVRR 92 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc------------CCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence 4789999999 89999999999999999999999999 99999998742 22211111110000 001
Q ss_pred eeEEEEeccCC------------------CcccCC-cccchHHHHhCCh-hHHhhhchhHHhhcCccccccccccccccc
Q 016339 224 RHVSLLPLSGG------------------GYLADT-PGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 224 r~i~~v~~~~~------------------~~l~Dt-pg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~ 283 (391)
+.++|+.|... |.-.+. .......+..+.+ +.+...-|. .+|||||||+-|||.+ +
T Consensus 93 ~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa---TFSGGEqQRVNIaRgf-i 168 (235)
T COG4778 93 TTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPA---TFSGGEQQRVNIARGF-I 168 (235)
T ss_pred hhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc---ccCCchheehhhhhhh-h
Confidence 22344433210 000000 0011112333433 455666777 9999999999999999 8
Q ss_pred CCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 284 GEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
-+-.++++| |.....-+.+++.+-+.....
T Consensus 169 vd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaA 204 (235)
T COG4778 169 VDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204 (235)
T ss_pred ccCceEEecCCcccccccchHHHHHHHHHHHhcCce
Confidence 888899999 677888999999987765433
No 367
>PLN03232 ABC transporter C family member; Provisional
Probab=99.62 E-value=1.7e-16 Score=183.77 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=103.8
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.. ..+|+++|+.+ +|+.++|+||||||||||+++|+|+. +|++|.+..-...++
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~G~i~~~~~~Ia 682 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL------------SHAETSSVVIRGSVA 682 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------cccCCCEEEecCcEE
Confidence 557889999964 46899999999 89999999999999999999999999 888887643233456
Q ss_pred ccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchh--------HHhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iaral 281 (391)
.++|.+.....|- .|+.+. . -. ++......+...++.+....+|. ....||||||||++||||+
T Consensus 683 yv~Q~p~Lf~gTIreNI~fg-----~-~~-~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 683 YVPQVSWIFNATVRENILFG-----S-DF-ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred EEcCccccccccHHHHhhcC-----C-cc-CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 6666654443331 333221 0 00 11222233334444443344443 2237999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHH-HHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYF-QLLDE 306 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~-~ll~e 306 (391)
..+|+++|+| |......+. +++..
T Consensus 756 -y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 756 -YSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred -hcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 9999999999 556555554 44443
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.62 E-value=1.6e-16 Score=184.53 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred hcCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC-CcceecCcc
Q 016339 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQR 208 (391)
Q Consensus 134 ~~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~-G~I~~~g~~ 208 (391)
.+.+++++++|.. ..+|+++|+.+ +|+.++|+||||||||||+++|+|.. +|++ |+|.+.+ .
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~GG~I~l~~-~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL------------PPRSDASVVIRG-T 680 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh------------ccCCCceEEEcC-e
Confidence 3567899999964 46899999999 89999999999999999999999999 8999 8998754 4
Q ss_pred ccccccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchh--------HHhhcCccccccccccc
Q 016339 209 VGEVSTKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE--------IKEMLKANEPAKCSFNN 279 (391)
Q Consensus 209 v~~v~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~qr~~iar 279 (391)
++.++|.+.....|- .|+.+. . -.| +......+...++.+....+|. ....||||||||++|||
T Consensus 681 Iayv~Q~p~LfngTIreNI~fg-----~-~~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 681 VAYVPQVSWIFNATVRDNILFG-----S-PFD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EEEEcCccccCCCCHHHHHhCC-----C-ccc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 667777665444332 333321 0 011 2222333444455444444443 22379999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHH-HHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYF-QLLDEI 307 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~-~ll~el 307 (391)
|+ ..+|+++|+| |+.....+. +++..+
T Consensus 754 Al-y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 754 AV-YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HH-hCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 99 9999999999 556555553 455443
No 369
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.62 E-value=6.8e-15 Score=129.77 Aligned_cols=144 Identities=31% Similarity=0.502 Sum_probs=102.7
Q ss_pred ccccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
++.+...+++|.+++|+.+..|... ...+.+++ ...++|+++|+||+|+.+......|.......+++.+.+|..+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3456778899999999998776432 33455444 4568999999999999876555555433445677889999988
Q ss_pred ccchHHHhhcc--------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC
Q 016339 147 KLGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (391)
Q Consensus 147 ~~~L~~ls~~i--------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~ 218 (391)
+.+++.+.-.+ ....++++|.||+|||||+|.|.+... ..++...+
T Consensus 81 ~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-------------------------~~~~~~~~- 134 (156)
T cd01859 81 RLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHS-------------------------ASTSPSPG- 134 (156)
T ss_pred cccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc-------------------------cccCCCCC-
Confidence 88888766555 245789999999999999999987541 11122222
Q ss_pred CcceeeeEEEEeccCCCcccCCccc
Q 016339 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 219 ~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
+|++..++..+.+.++.||||+
T Consensus 135 ---~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 ---YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred ---eeeeeEEEEcCCCEEEEECcCC
Confidence 4555666666556678999985
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.61 E-value=6.7e-15 Score=142.44 Aligned_cols=144 Identities=26% Similarity=0.386 Sum_probs=107.4
Q ss_pred ccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
.+..++++|.++.|+.+..|... ...+.+++ .++++++|+||+|++++.+...|...+.+.++..+.+|..++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 45578999999999998877443 34556655 3789999999999988776778887777677788999998887
Q ss_pred chHHHhhcc----c--------------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i----~--------------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+...+ + .-.++++|.+|+|||||||.|.+... .
T Consensus 90 gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~-------------------------~ 144 (276)
T TIGR03596 90 GVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV-------------------------A 144 (276)
T ss_pred cHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------c
Confidence 777764333 1 13589999999999999999998651 1
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
.++..++ +|+...++....+..+.||||+..+.
T Consensus 145 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 145 KVGNRPG----VTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred ccCCCCC----eecceEEEEeCCCEEEEECCCcccCC
Confidence 2222233 67777777776566799999997553
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.61 E-value=4.7e-15 Score=133.22 Aligned_cols=141 Identities=29% Similarity=0.444 Sum_probs=101.8
Q ss_pred cccccccccceeEEEEEecCCCCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~-~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
..+..++|+|++++|+.+..|.... ..+..+ ..++++++|+||+|+.+++....|...+...+++.+.+|..++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 86 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 3456789999999999988774432 222222 2478999999999998776666677777666778899999888
Q ss_pred cchHHHhhccc-----------------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 148 LGLDSLLQRLR-----------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 148 ~~L~~ls~~i~-----------------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+++.+...+. +-.++++|.+|+|||||+|.|.+... .
T Consensus 87 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~-------------------------~ 141 (171)
T cd01856 87 KGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV-------------------------A 141 (171)
T ss_pred ccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------e
Confidence 88887765542 23799999999999999999998651 0
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
.++..++ +|....++....+..++||||+
T Consensus 142 ~~~~~~~----~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 142 KVGNKPG----VTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred eecCCCC----EEeeeEEEEecCCEEEEECCCC
Confidence 1122222 5666666665556679999996
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=4e-16 Score=180.55 Aligned_cols=140 Identities=20% Similarity=0.178 Sum_probs=99.2
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee-e
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-R 224 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-r 224 (391)
..+|+++|+.+ +|++++|+|||||||||||++|+|+. +|++|+|.++| .++++++.+.....+- .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~------------~~~~G~i~~~g-~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL------------EPSEGKIKHSG-RISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECC-EEEEEeCCCccCCccHHH
Confidence 46899999999 89999999999999999999999999 99999999988 5778887765444321 3
Q ss_pred eEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccCCCcEEEec----
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
++.+. .. .+. ......+...++......+|.. ...||||||||++||||+ ..+|+++|+|
T Consensus 506 NI~~g-~~-----~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-~~~~~illLDep~s 577 (1490)
T TIGR01271 506 NIIFG-LS-----YDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-YKDADLYLLDSPFT 577 (1490)
T ss_pred HHHhc-cc-----cch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-HcCCCEEEEeCCcc
Confidence 33321 10 110 0011122222333333333321 238999999999999999 9999999999
Q ss_pred --CHHHHHHHHH-HHHHH
Q 016339 293 --DWERYQYYFQ-LLDEI 307 (391)
Q Consensus 293 --D~~~~~~~~~-ll~el 307 (391)
|+.....+.+ ++.++
T Consensus 578 aLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 7777777776 45554
No 373
>PLN03140 ABC transporter G family member; Provisional
Probab=99.59 E-value=4.7e-16 Score=178.80 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=104.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..+|+++|+.+ +|++++|+||||||||||||+|+|...+ .+.+|+|.++|.+.... ...+.
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~----------g~~~G~I~inG~~~~~~--------~~~~~ 954 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG----------GYIEGDIRISGFPKKQE--------TFARI 954 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC----------CcccceEEECCccCChH--------Hhhhh
Confidence 46899999999 8999999999999999999999998721 14789999998754210 01234
Q ss_pred EEEEeccCCC----cccCC---------cc-c--------chHHHHhCChhHHhhhchhH--HhhcCccccccccccccc
Q 016339 226 VSLLPLSGGG----YLADT---------PG-F--------NQPSLLKVTKQSLAQTFPEI--KEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 226 i~~v~~~~~~----~l~Dt---------pg-~--------~~~~l~~~~~~~l~~~~p~~--~~~LSgGq~qr~~iaral 281 (391)
+++++|.... .+.++ |. . .+..+..+++.+..+..+.. ...||||||||++||+++
T Consensus 955 igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL 1034 (1470)
T PLN03140 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL 1034 (1470)
T ss_pred eEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH
Confidence 5666665211 11111 10 0 12234455666665554311 137999999999999999
Q ss_pred ccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 282 HLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 282 h~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+++++| |+.....++++|+++.+.
T Consensus 1035 -~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 1035 -VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred -hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999 889999999999998754
No 374
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.59 E-value=7e-16 Score=177.40 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=106.1
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceee
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr 224 (391)
++.+|+++|+.+ +|++++|+||||||||||||+|+|...+. ..|.+|+|.++|.++...... .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~--------~~~~~G~I~~~G~~~~~~~~~------~r~ 138 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF--------HIGVEGVITYDGITPEEIKKH------YRG 138 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--------CCCceeEEEECCEehHHHHhh------cCc
Confidence 356899999999 89999999999999999999999986210 157899999999876433211 234
Q ss_pred eEEEEeccCCC----cccCC---------c-----ccc---------hHHHHhCChhHHhhhchh--HHhhcCccccccc
Q 016339 225 HVSLLPLSGGG----YLADT---------P-----GFN---------QPSLLKVTKQSLAQTFPE--IKEMLKANEPAKC 275 (391)
Q Consensus 225 ~i~~v~~~~~~----~l~Dt---------p-----g~~---------~~~l~~~~~~~l~~~~p~--~~~~LSgGq~qr~ 275 (391)
.++++++.... .+.++ | +.. +..+..+++.+..+.... ....||||||||+
T Consensus 139 ~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred eeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 56777665211 11111 1 010 112333455444433211 1237999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+||+++ +.+|+++++| |+.....+.++|+++.++
T Consensus 219 sIA~aL-~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~ 258 (1394)
T TIGR00956 219 SIAEAS-LGGAKIQCWDNATRGLDSATALEFIRALKTSANI 258 (1394)
T ss_pred HHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999 889999999999998764
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.59 E-value=1.4e-15 Score=174.94 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=101.9
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccccccccCCCcc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
+..+|+++|+.+ +|++++|+||||||||||||+|+|.. +|+ +|+|.++|.++.....
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l------------~~~~~~~G~I~~nG~~~~~~~~------- 237 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL------------DPSLKVSGEITYNGYRLNEFVP------- 237 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEechhhcc-------
Confidence 467899999999 89999999999999999999999998 776 9999999976633211
Q ss_pred eeeeEEEEeccCCC----cccCC---------ccc----------------------------------------chHHH
Q 016339 222 TTRHVSLLPLSGGG----YLADT---------PGF----------------------------------------NQPSL 248 (391)
Q Consensus 222 ttr~i~~v~~~~~~----~l~Dt---------pg~----------------------------------------~~~~l 248 (391)
.+.+++++|.... .+.++ ++. .+..+
T Consensus 238 -~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L 316 (1470)
T PLN03140 238 -RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTL 316 (1470)
T ss_pred -cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHH
Confidence 1335555554110 11111 000 01122
Q ss_pred HhCChhHHh-----hhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 249 LKVTKQSLA-----QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 249 ~~~~~~~l~-----~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
..+++.+.. +.++. .||||||||+.||+++ +.+|+++++| |......+.++|+++.+.
T Consensus 317 ~~lGL~~~~~t~vg~~~~r---glSGGerkRVsia~aL-~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~ 385 (1470)
T PLN03140 317 KILGLDICKDTIVGDEMIR---GISGGQKKRVTTGEMI-VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385 (1470)
T ss_pred HHcCCccccCceeCCcccc---CCCcccceeeeehhhh-cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh
Confidence 233443322 22333 8999999999999999 9999999999 889999999999998654
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.58 E-value=2.2e-15 Score=138.79 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=93.0
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEE
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v 229 (391)
+++++.+ +| +++|+||||||||||+++|.++..+.. ...+..+..|++.+.+.++.. ....+.++++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~v 81 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQS---AKSLRGEKMSDVIFAGSETRK--------PANFAEVTLT 81 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcccc---chhhcccCHHHHhccCCCCCC--------CCceEEEEEE
Confidence 5667777 67 999999999999999999999872110 000112233456665554321 1124678899
Q ss_pred eccCCCcccC-CcccchHHHHhCChhHHhhhchhHHhhcCccccccccccccccc----CCCcEEEec------CHHHHH
Q 016339 230 PLSGGGYLAD-TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQ 298 (391)
Q Consensus 230 ~~~~~~~l~D-tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~ 298 (391)
+++...+... ........+.. .+..+..+. .||+||+||++||+++ + ..|+++++| |+....
T Consensus 82 fq~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~---~LS~G~kqrl~la~~l-~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 82 FDNSDGRYSIISQGDVSEIIEA---PGKKVQRLS---LLSGGEKALTALALLF-AIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred EEcCCCceeEEehhhHHHHHhC---CCccccchh---hcCHHHHHHHHHHHHH-HHhccCCCCEEEEeCCcccCCHHHHH
Confidence 9876544211 01111222222 344556666 9999999999999998 4 467999999 888999
Q ss_pred HHHHHHHHHHH
Q 016339 299 YYFQLLDEIRI 309 (391)
Q Consensus 299 ~~~~ll~el~~ 309 (391)
.+.+++.++.+
T Consensus 155 ~l~~~l~~~~~ 165 (197)
T cd03278 155 RFARLLKEFSK 165 (197)
T ss_pred HHHHHHHHhcc
Confidence 99999998754
No 377
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=1.5e-15 Score=170.45 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=122.5
Q ss_pred cCCeeEEEEcCCc--cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~--~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.|+++.+.|..+ .+|++||+.| +||.+||||..|||||||+++|.++. .|.+|+|.|||.++..
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~------------e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV------------EPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc------------CccCCeEEEcCeeccc
Confidence 4578999999665 7999999999 89999999999999999999999999 9999999999999987
Q ss_pred cccccCCCcceeeeEEEEecc---CCCcccCC--c--ccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLS---GGGYLADT--P--GFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~---~~~~l~Dt--p--g~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+.-+. .+..++.+||+ +.|.+..| | ...+ ..|+...+.+.....|. -...+|-|||
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 76543 56778899998 34444433 1 1222 33445555544444442 2347899999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
|-+++|||+ +.+.+++|+| |++.-..+++.+++
T Consensus 1282 QLlCLARAL-Lr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1282 QLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred HHHHHHHHH-hccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 999999999 9999999999 88888888887776
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.57 E-value=2.1e-15 Score=157.48 Aligned_cols=156 Identities=24% Similarity=0.195 Sum_probs=110.9
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-Cccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~ 211 (391)
+.++++.+.-.. ..-++++++.+ +|+.+.|.||||||||||+++|+|++ +--+|+|.+- +.++-.
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW------------P~g~G~I~~P~~~~~lf 460 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW------------PWGSGRISMPADSALLF 460 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC------------ccCCCceecCCCCceEE
Confidence 456777776644 45789999999 89999999999999999999999999 5566777554 444666
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH---HhhcCcccccccccccccccCCCcE
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI---KEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~---~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
+||+|-....+-+....+|..... .. .......|..+++.++.+++-+. ...||+|||||++|||.+ ++.|+.
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~~--~~-d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil-L~kP~~ 536 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAPD--FS-DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-LHKPKW 536 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCCC--CC-hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH-HcCCCE
Confidence 777654333322332222322110 00 11122345677888777665432 248999999999999999 999999
Q ss_pred EEec------CHHHHHHHHHHHHH
Q 016339 289 VVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 289 lllD------D~~~~~~~~~ll~e 306 (391)
+++| |++....+++++++
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHh
Confidence 9999 88888888888876
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=1.4e-15 Score=158.53 Aligned_cols=137 Identities=22% Similarity=0.279 Sum_probs=94.6
Q ss_pred eeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccc
Q 016339 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (391)
Q Consensus 138 ~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~ 214 (391)
++++++|++ ...+++++|.+ .|+.+||+||||+||||||++|+|.. .|.+|+|.+.. ..+++
T Consensus 325 ~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~------------~~~~G~v~~g~~v~igy--- 389 (530)
T COG0488 325 ENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL------------GPLSGTVKVGETVKIGY--- 389 (530)
T ss_pred eccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc------------ccCCceEEeCCceEEEE---
Confidence 446677755 47899999999 89999999999999999999999998 78889887642 33344
Q ss_pred ccCCCcceeeeEEEEeccCCCc-----cc----CC-ccc----chHHHHhCChh-HHhhhchhHHhhcCccccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY-----LA----DT-PGF----NQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~-----l~----Dt-pg~----~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
+.|..... +. +. |+. ....+..+... +...+... .||||||-||.||.
T Consensus 390 --------------f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~---~LSGGEk~Rl~La~ 452 (530)
T COG0488 390 --------------FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG---VLSGGEKARLLLAK 452 (530)
T ss_pred --------------EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchh---hcCHhHHHHHHHHH
Confidence 44332111 11 11 111 11122223221 11223333 89999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
++ ..+|.++|+| |.+..+.+.+.|.+.
T Consensus 453 ll-~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f 485 (530)
T COG0488 453 LL-LQPPNLLLLDEPTNHLDIESLEALEEALLDF 485 (530)
T ss_pred Hh-ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC
Confidence 99 9999999999 777777777766653
No 380
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.56 E-value=3.3e-14 Score=138.34 Aligned_cols=144 Identities=26% Similarity=0.418 Sum_probs=107.3
Q ss_pred ccccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
.+..++.+|.++.|..+..|... ...+..++ .++++++|+||+||.+.+..+.|...+.+.++..+.+|..++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 34578899999999998877432 33455544 2789999999999988766778888787777788889988777
Q ss_pred chHHHhhcc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+...+ .+-.++|+|.+|+|||||||.|.|.. ..
T Consensus 93 gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~ 147 (287)
T PRK09563 93 GVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IA 147 (287)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------cc
Confidence 776654332 12369999999999999999999865 11
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
.++..++ +|++..++....+.++.||||+..+.
T Consensus 148 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 148 KTGNRPG----VTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred ccCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 2233333 78888888877667899999996543
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=9.6e-16 Score=144.07 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=47.7
Q ss_pred HHhCChhH-HhhhchhHHhhcCcccccccccccccccCCC--cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 248 LLKVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 248 l~~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+++.. ..+.+|. .|||||+||++||+++ +.+| +++|+| |+.....+.+++.++++.
T Consensus 121 l~~~~l~~~~~~~~~~---~LSgG~~qrv~laral-~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 188 (226)
T cd03270 121 LVDVGLGYLTLSRSAP---TLSGGEAQRIRLATQI-GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL 188 (226)
T ss_pred HHHCCCCcccccCccC---cCCHHHHHHHHHHHHH-HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC
Confidence 34445544 3566777 9999999999999999 8887 599999 888999999999988643
No 382
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.54 E-value=5.1e-14 Score=128.38 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=97.7
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH----HHHHH--HHHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~----~~~~~--~~~~~~g~---~~v~~s 143 (391)
...++|.+++|+.+..|..... ..+ .....++++++|+||+|+.+.+. ...|. ..+...++ ..+.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 4678999999999876543221 111 12345789999999999975432 23343 11133444 567889
Q ss_pred cCCccchHHHhhcc-----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC
Q 016339 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~ 218 (391)
..++.+++.+-..+ .+..++|+|.+|+|||||||.|.+..... .. ...-..++..
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~-----------~~------~~~~~~~~~~--- 166 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGK-----------KK------LKDLLTTSPI--- 166 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccc-----------cc------cccccccCCC---
Confidence 98888888876666 45789999999999999999999865100 00 0000122222
Q ss_pred CcceeeeEEEEeccCCCcccCCccc
Q 016339 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 219 ~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
++||++...+....+.+++||||+
T Consensus 167 -~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 167 -PGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred -CCeeeeeEEEecCCCCEEEeCcCC
Confidence 338888888888767789999996
No 383
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.54 E-value=3e-15 Score=165.58 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=119.0
Q ss_pred eeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++.+-|+... |++++++.+ +|++.+++|+|||||||++|+|.|.. .|++|++++.|.++..-...
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~------------~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET------------KPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc------------cCCcceEEEecCccccccch
Confidence 56777787777 999999999 89999999999999999999999999 99999999998877542222
Q ss_pred cCCCcceeeeEEEEeccCCCc--------------cc-----CCcccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY--------------LA-----DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~--------------l~-----Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
.. ..+++++-||....+ +. |.....+..+..+++.+.+++... .+|||+++|+.
T Consensus 636 ~~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~---~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQ----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVR---TYSGGNKRRLS 708 (885)
T ss_pred hh----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchh---hCCCcchhhHH
Confidence 11 234566666652211 11 111122344455666666666544 89999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+|-++ +.+|.++++| ||..++.+++++.++++..
T Consensus 709 ~aial-ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 709 FAIAL-IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999 9999999999 9999999999999998754
No 384
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.54 E-value=4.3e-14 Score=142.17 Aligned_cols=169 Identities=26% Similarity=0.405 Sum_probs=122.0
Q ss_pred cEEEEceecccCceeEEEE-----------eeccccccccccccccceeEEEEEecC-CCCCHHHHHHHHHHHHhCCCCE
Q 016339 43 DKVVVGSIDWVDRRGMIEN-----------VFQRSTEILDPPVANVDHLLLLFSMDQ-PKLEPFALTRFLVEAESTGIPL 110 (391)
Q Consensus 43 D~V~~~~~~~~~~~~~i~~-----------v~~R~~~~~~~~~anvD~~liv~s~~~-p~~~~~~l~r~L~~a~~~~~~~ 110 (391)
|++. ....|.+..+.+.+ +..+..++...++..+|.++.|+.... +......+.++| +..++|+
T Consensus 40 Dr~y-~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~L---r~~~kpv 115 (444)
T COG1160 40 DRIY-GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKIL---RRSKKPV 115 (444)
T ss_pred CCcc-ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HhcCCCE
Confidence 5543 22356666555543 344455566778899999888888764 456677888888 4778999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCccchHHHhhcc------------cC----CEEEEEecCCCcHH
Q 016339 111 TLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLDSLLQRL------------RD----QTTVIVGPSGVGKS 173 (391)
Q Consensus 111 ~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~i------------~G----e~vaLvGpSGsGKS 173 (391)
++|+||+|....++. ...|+++|+ +++.+|..++.++.++--.+ .+ -.+||+|.+++|||
T Consensus 116 iLvvNK~D~~~~e~~---~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS 192 (444)
T COG1160 116 ILVVNKIDNLKAEEL---AYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS 192 (444)
T ss_pred EEEEEcccCchhhhh---HHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence 999999999854432 357889999 78999999998887765332 12 47999999999999
Q ss_pred HHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---cccCCcccchHH
Q 016339 174 SLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS 247 (391)
Q Consensus 174 TLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dtpg~~~~~ 247 (391)
||+|+|+|..+ .-++..+| ||++.......+++ .++||.|++...
T Consensus 193 sLiN~ilgeeR-------------------------~Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 193 SLINAILGEER-------------------------VIVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred HHHHHhccCce-------------------------EEecCCCC----ccccceeeeEEECCeEEEEEECCCCCccc
Confidence 99999999872 23445555 77776666655443 388999987653
No 385
>PTZ00243 ABC transporter; Provisional
Probab=99.53 E-value=2.2e-15 Score=174.84 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=93.1
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
.+++..+|+++||.+ +|++++|+|||||||||||++|+|+. +|++|+|.+. ..++.+++.+.....
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~------------~~~~G~i~~~-~~i~yv~Q~~~l~~~ 735 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF------------EISEGRVWAE-RSIAYVPQQAWIMNA 735 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEEC-CeEEEEeCCCccCCC
Confidence 345667899999999 99999999999999999999999999 9999999875 357777776544332
Q ss_pred ee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCcccccccccccccccCCCcEEEec
Q 016339 222 TT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 222 tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+- .++.+.. ..+. ......+...++.+..+.+| +....||||||||++||||+ ..+|+++|+|
T Consensus 736 Tv~enI~~~~------~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-~~~p~illLD 807 (1560)
T PTZ00243 736 TVRGNILFFD------EEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-YANRDVYLLD 807 (1560)
T ss_pred cHHHHHHcCC------hhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEc
Confidence 21 2332210 0010 00111121122222222221 11238999999999999999 9999999999
Q ss_pred ------CHHHHHHHHH
Q 016339 293 ------DWERYQYYFQ 302 (391)
Q Consensus 293 ------D~~~~~~~~~ 302 (391)
|+.....+++
T Consensus 808 EP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 808 DPLSALDAHVGERVVE 823 (1560)
T ss_pred CccccCCHHHHHHHHH
Confidence 5655555544
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.9e-15 Score=146.61 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=115.4
Q ss_pred HhcCCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 133 HTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 133 ~~~g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.++.++++.++|... .-+..||++| +|+++-|+|.||||||||+.+|.|+. .|++|.|+++|..|.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~------------~PqsG~I~ldg~pV~ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY------------QPQSGEILLDGKPVS 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc------------CCCCCceeECCccCC
Confidence 456788999999766 5678899999 89999999999999999999999999 999999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccC-------CCcccCCcccchHHHHhCChhHHhhhch-hH-HhhcCccccccccccccc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG-------GGYLADTPGFNQPSLLKVTKQSLAQTFP-EI-KEMLKANEPAKCSFNNCL 281 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~-------~~~l~Dtpg~~~~~l~~~~~~~l~~~~p-~~-~~~LSgGq~qr~~iaral 281 (391)
.-.... .+.-++.++.++ +..-.-.|+.....+..+.+........ ++ .-.||.|||+|+++-.|+
T Consensus 389 ~e~led-----YR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 389 AEQLED-----YRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred CCCHHH-----HHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 322211 111122222222 2111234555555555554433211110 11 127999999999999999
Q ss_pred ccCCCcEEEec------CH-HHHHHHHHHHHHHHHHHhhh
Q 016339 282 HLGEPGCVVKG------DW-ERYQYYFQLLDEIRIREEFQ 314 (391)
Q Consensus 282 h~~eP~~lllD------D~-~~~~~~~~ll~el~~~~~~~ 314 (391)
+.|.+++|+| || -|+..|..++-.++++.++.
T Consensus 464 -lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 464 -LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred -HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 9999999999 44 37777778888888777663
No 387
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=6e-15 Score=157.14 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=110.3
Q ss_pred CeeEEEEcC-----CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVE-----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~-----~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.++.++.. .+..|++|+..+ +|+++||+||||||||||||+|+|....+ ...+|+|.+||+...
T Consensus 28 ~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~---------~~~~G~ilvNG~~~~ 98 (613)
T KOG0061|consen 28 FRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG---------LKLSGEILLNGRPRD 98 (613)
T ss_pred EEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC---------CcceEEEEECCccCc
Confidence 455555542 367899999999 89999999999999999999999998321 257899999994321
Q ss_pred ccccccCCCcceeeeEEEEeccCCC----cccC---------Ccc---------cchHHHHhCChhHHhhhchh--HHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLAD---------TPG---------FNQPSLLKVTKQSLAQTFPE--IKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~----~l~D---------tpg---------~~~~~l~~~~~~~l~~~~p~--~~~~ 266 (391)
.- ...+.++++.|+.-. .+.+ .|. ..+..+..+++....+..-. ..+-
T Consensus 99 ~~--------~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg 170 (613)
T KOG0061|consen 99 SR--------SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRG 170 (613)
T ss_pred hh--------hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence 10 022345555554211 1111 121 22333445666655554432 1136
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|||||+|++||.-+ +++|.++++| |......++++|+++.++...
T Consensus 171 iSGGErkRvsia~El-l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grt 222 (613)
T KOG0061|consen 171 LSGGERKRVSIALEL-LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRT 222 (613)
T ss_pred cccchhhHHHHHHHH-HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCE
Confidence 999999999999999 9999999999 777888899999999877443
No 388
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.48 E-value=2.4e-14 Score=135.25 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=37.8
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ + .+|+++++| |+.....+++.+.++..
T Consensus 158 ~lS~G~~~r~~la~~l-~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~ 210 (243)
T cd03272 158 QLSGGQKSLVALALIF-AIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD 210 (243)
T ss_pred ccCHHHHHHHHHHHHH-HHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999 4 468999999 88888899888888754
No 389
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.48 E-value=7.1e-13 Score=119.68 Aligned_cols=136 Identities=29% Similarity=0.339 Sum_probs=88.8
Q ss_pred ceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc--cc-----
Q 016339 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK--LG----- 149 (391)
Q Consensus 78 D~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~--~~----- 149 (391)
|.++.|..+..|... ...+.+++. ....++|.++|+||+|+++++....|..++.+......+.+.... ..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 778888888877332 334555532 244679999999999999999888999888775322222222110 00
Q ss_pred ------------------hHHHhhcc-----c-----CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc
Q 016339 150 ------------------LDSLLQRL-----R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (391)
Q Consensus 150 ------------------L~~ls~~i-----~-----Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~ 201 (391)
.+.+-..+ + .-.++++|.+|+|||||||.|.|...
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~----------------- 142 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRA----------------- 142 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCccc-----------------
Confidence 11110001 1 24789999999999999999998651
Q ss_pred ceecCccccccccccCCCcceeeeEEEEeccCCCcccCCccc
Q 016339 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (391)
Q Consensus 202 I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~ 243 (391)
..++..++ +|++...+....+..+.||||+
T Consensus 143 --------~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 143 --------CNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred --------ceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 12233333 7777777776656678999985
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=1.9e-14 Score=161.77 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=98.7
Q ss_pred CeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+++.+++... ...|+||||.+ +|+.+||+||-||||||||.+|+|.. ...+|++.++|. ++++
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm------------~~~sG~v~v~gs-iaYv 587 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM------------PKLSGSVAVNGS-VAYV 587 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc------------ccccceEEEcCe-EEEe
Confidence 3555666543 33899999999 89999999999999999999999999 899999999886 7888
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhch--------hHHhhcCccccccccccccccc
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP--------EIKEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p--------~~~~~LSgGq~qr~~iaralh~ 283 (391)
+|.+.....|- .|+ ++..++ | +..-+..+..+.+..-.+.+| |-.-.||||||||+++|||+ -
T Consensus 588 ~Q~pWI~ngTvreNI-LFG~~~-----d-~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV-Y 659 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENI-LFGSPY-----D-EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV-Y 659 (1381)
T ss_pred ccccHhhCCcHHHhh-hcCccc-----c-HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH-h
Confidence 88776554443 333 222111 1 111122333344443334443 22238999999999999999 9
Q ss_pred CCCcEEEecCH
Q 016339 284 GEPGCVVKGDW 294 (391)
Q Consensus 284 ~eP~~lllDD~ 294 (391)
.+.++.++|||
T Consensus 660 ~~adIYLLDDp 670 (1381)
T KOG0054|consen 660 QDADIYLLDDP 670 (1381)
T ss_pred ccCCEEEEcCc
Confidence 99999999965
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=5.9e-14 Score=130.79 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=87.6
Q ss_pred EcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce
Q 016339 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (391)
Q Consensus 143 s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t 222 (391)
+|++..+++++++ ++++|+|||||||||||++|.-.... +.. . .....++.+.+.....+..
T Consensus 13 ~~~~~~~l~~~~~----~i~~ivGpNGaGKSTll~~i~~~~G~----------~~~--~--~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 13 SYAGEQVIGPFHK----SFSAIVGPNGSGKSNVIDSMLFVFGF----------RAS--K--MRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred cCCCCeeeccCCC----CeEEEECCCCCCHHHHHHHHHHHhcc----------CHH--H--hhhhhHHHHhcCCCCCCCC
Confidence 7888888888877 78999999999999999999843200 000 0 0012244444433322222
Q ss_pred -eeeEEEEeccCCC--------cccCCccc---chHHHHhCChhHHhhhchhHHhhcCccccccccccccccc----CCC
Q 016339 223 -TRHVSLLPLSGGG--------YLADTPGF---NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL----GEP 286 (391)
Q Consensus 223 -tr~i~~v~~~~~~--------~l~Dtpg~---~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP 286 (391)
...+..++....+ .....+.+ ....+..+++.+..+..+. .||+||+||++||+|+ + ..|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~---~lS~G~~~r~~la~al-~~~~~~~p 150 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS---NLSGGEKTLSSLALVF-ALHHYKPT 150 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh---hcCHHHHHHHHHHHHH-HhcccCCC
Confidence 2344444432111 00011110 0111223334444455555 8999999999999987 4 357
Q ss_pred cEEEec------CHHHHHHHHHHHHHHH
Q 016339 287 GCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 287 ~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+++++| |+.....+.+++.++.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 999999 8889999999998874
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.45 E-value=6e-14 Score=143.80 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=101.8
Q ss_pred CeeEEEEcCC-c-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee--cC--ccc
Q 016339 137 YEPLFCSVES-K-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF--ED--QRV 209 (391)
Q Consensus 137 ~~~v~~s~~~-~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~--~g--~~v 209 (391)
++.++++..+ + ..++++||.+ +|+.+.|.||||||||||++.|.|++ +-.+|++.. ++ .++
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW------------p~~~G~l~k~~~~~~~~l 503 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW------------PSTGGKLTKPTDGGPKDL 503 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc------------ccCCCeEEecccCCCCce
Confidence 4556666544 3 4677899999 89999999999999999999999999 667777753 23 446
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcccCCcccc----hHHHHhCChhHHhhhchhHH--------hhcCccccccccc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN----QPSLLKVTKQSLAQTFPEIK--------EMLKANEPAKCSF 277 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~----~~~l~~~~~~~l~~~~p~~~--------~~LSgGq~qr~~i 277 (391)
-.++|+|-..-.|-|.-..+|..... .+..+.. ...|+.+.+.++..+...+. +.||+||+||++|
T Consensus 504 fflPQrPYmt~GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 504 FFLPQRPYMTLGTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred EEecCCCCccccchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 66777764222232443344432111 1111221 23345556666655443222 4899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~e 306 (391)
||.+ .++|..+|+| +.+....+.+++++
T Consensus 582 ARLf-y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 582 ARLF-YHKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred HHHH-hcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 9999 9999999999 34444444454544
No 393
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.44 E-value=8.1e-13 Score=130.64 Aligned_cols=142 Identities=32% Similarity=0.504 Sum_probs=111.5
Q ss_pred ccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhc-CCeeEEEEcCCccc
Q 016339 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~-g~~~v~~s~~~~~~ 149 (391)
..+..+|.++.|..+..|..+ ...++++. .+++.++|+||+||++....+.|...+.+- +...+.++......
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~ 104 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQG 104 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccC
Confidence 356789999999999998554 44678876 356679999999999999999999988776 67777777655554
Q ss_pred hHHHh--------hcc-----cC-----CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 150 LDSLL--------QRL-----RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 150 L~~ls--------~~i-----~G-----e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+..+. ..+ .| ..+++||-+++|||||||.|+|.. ...
T Consensus 105 ~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~ 159 (322)
T COG1161 105 GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAK 159 (322)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------cee
Confidence 44444 222 23 679999999999999999999987 134
Q ss_pred cccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
++..+| +|++.+.+....+.++.||||+..+.
T Consensus 160 ~s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 160 TSNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPK 191 (322)
T ss_pred eCCCCc----eecceEEEEcCCCeEEecCCCcCCCC
Confidence 555555 89999999999888999999987654
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.43 E-value=2.3e-12 Score=129.33 Aligned_cols=157 Identities=27% Similarity=0.376 Sum_probs=107.1
Q ss_pred cccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH----HHHHHHH-HHHhcCC---eeEEEEcC
Q 016339 75 ANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCSVE 145 (391)
Q Consensus 75 anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~----~~~~~~~-~~~~~g~---~~v~~s~~ 145 (391)
.++|.++.|+.+..+..+ ...+.+++ .++++++|+||+||.+.. ....|.. .+...|+ +.+.+|..
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk 136 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK 136 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC
Confidence 467888888888654322 23444443 378999999999998643 3455643 4566776 36778998
Q ss_pred CccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 146 SKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 146 ~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
++.+++.+...+ .|..++|+|.+|||||||||.|++.... . .....++..+ +
T Consensus 137 ~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~------------~--------~~~~~~s~~p----g 192 (360)
T TIGR03597 137 KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNG------------D--------KDVITTSPFP----G 192 (360)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccC------------C--------cceeeecCCC----C
Confidence 888888877666 4779999999999999999999986510 0 0112334333 4
Q ss_pred eeeeEEEEeccCCCcccCCcccchHH--HHhCChhHHhhhc
Q 016339 222 TTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (391)
Q Consensus 222 ttr~i~~v~~~~~~~l~Dtpg~~~~~--l~~~~~~~l~~~~ 260 (391)
+|+.+..++...+.+++||||+.... ...+...++....
T Consensus 193 tT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 193 TTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred eEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 88888888876566799999997543 3334444443333
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.42 E-value=1.5e-13 Score=137.68 Aligned_cols=182 Identities=17% Similarity=0.114 Sum_probs=111.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCC-CcceeeeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR-GKHTTRHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~-~~~ttr~i~~v~~~~~~~ 236 (391)
.||+++++||||-||||++++|+|.+ +|++|. ..+..+++-+|.... +.++-+ .+.......
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~i------------kPdeg~--~~~~~vSyKPQyI~~~~~gtV~---~~l~~~~~~ 428 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVI------------KPDEGS--EEDLKVSYKPQYISPDYDGTVE---DLLRSAIRS 428 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccc------------cCCCCC--CccceEeecceeecCCCCCcHH---HHHHHhhhh
Confidence 68999999999999999999999999 999998 334455544443210 011101 000000000
Q ss_pred ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH------HHHHHHHHHHHHHHHH
Q 016339 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (391)
Q Consensus 237 l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~------~~~~~~~~ll~el~~~ 310 (391)
...+.-+....+..+.++.+.+..-. .|||||.||++||.|| ..+.++.++|.| +.+-..-+.++.+...
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v~---~LSGGELQRvaIaa~L-~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~ 504 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPVD---ELSGGELQRVAIAAAL-SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504 (591)
T ss_pred hcccchhHHhhcCccchHHHHhcccc---cCCchhHHHHHHHHHh-ccccCEEEecCchhhccHHHHHHHHHHHHHHHhh
Confidence 12222233344556677888887666 9999999999999999 999999999944 4444445666665544
Q ss_pred Hhhhh--hhhhcccccccccccccCcccccCCccccccccccchhhhhHHHHHHH
Q 016339 311 EEFQL--RTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDEL 363 (391)
Q Consensus 311 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~~~~~~~~~~ 363 (391)
.+... ..++.---..++.+.. +-.+||-..-.+.-..++|+--..|...|
T Consensus 505 ~~kta~vVdHDi~~~dyvsDr~i---vF~GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 505 NEKTALVVDHDIYMIDYVSDRLI---VFEGEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred cCceEEEEecceehhhhhhceEE---EEecCCCccCcCCCCccHHHHHHHHHHHc
Confidence 33311 1111111122222322 23457777777777777887777776655
No 396
>PRK13796 GTPase YqeH; Provisional
Probab=99.42 E-value=3.5e-12 Score=128.18 Aligned_cols=155 Identities=26% Similarity=0.393 Sum_probs=104.1
Q ss_pred eeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCH----HHHHHHHHH-HHhcCC---eeEEEEcCCccc
Q 016339 79 HLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSR-LHTWGY---EPLFCSVESKLG 149 (391)
Q Consensus 79 ~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~----~~~~~~~~~-~~~~g~---~~v~~s~~~~~~ 149 (391)
.++.|..+..+..+ ...+.++. .++++++|+||+||.+. +....|... ++..|+ +.+.+|..++.+
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG 146 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC
Confidence 66667776554322 22344443 37899999999999863 234556543 445676 567889888888
Q ss_pred hHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 150 L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
++.+-..+ +|..+.+||.+|||||||||+|.+... | ..+...++ ..++||++
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~-----~~~~~~~s----~~pGTT~~ 202 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------G-----EKDVITTS----RFPGTTLD 202 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------C-----ccceEEec----CCCCccce
Confidence 88776665 678899999999999999999997541 0 00111233 34459999
Q ss_pred EEEEeccCCCcccCCcccchH-HH-HhCChhHHhhhchh
Q 016339 226 VSLLPLSGGGYLADTPGFNQP-SL-LKVTKQSLAQTFPE 262 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~-~l-~~~~~~~l~~~~p~ 262 (391)
...++++.+..++||||+... .+ ..+..+++...+|.
T Consensus 203 ~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~ 241 (365)
T PRK13796 203 KIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPK 241 (365)
T ss_pred eEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCC
Confidence 888888777789999999532 22 23455555555554
No 397
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.41 E-value=4.8e-13 Score=124.50 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=84.2
Q ss_pred HHHhhcc--cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 151 DSLLQRL--RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 151 ~~ls~~i--~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
.+|+|.. +|++++|+||||||||||+++|++... .+..+....+ .....+... .....+.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-----------g~~~~~~~~~-~~~~~~~~~-----~~~~~v~~ 80 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-----------GKTPRYGRQE-NLRSVFAPG-----EDTAEVSF 80 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-----------cCccccccch-hHHHHhcCC-----CccEEEEE
Confidence 3445544 488999999999999999999996431 1222222211 000011110 12344555
Q ss_pred EeccCCCc--ccCCcccchHHH------HhCChhHHhhhchhHHhhcCcccccccccccccccC----------CCcEEE
Q 016339 229 LPLSGGGY--LADTPGFNQPSL------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG----------EPGCVV 290 (391)
Q Consensus 229 v~~~~~~~--l~Dtpg~~~~~l------~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~----------eP~~ll 290 (391)
.++..+.. ....+++..... .......+.+..+. .||+||+||++||+++ +. +|++++
T Consensus 81 ~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~---~lS~G~~~r~~la~al-~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 81 TFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVS---TLSGGETFLASLSLAL-ALSEVLQNRGGARLEALF 156 (213)
T ss_pred EEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCcc---ccCHHHHHHHHHHHHH-HhHHHhhhccCCCCCEEE
Confidence 55543221 112223322211 12234555666676 8999999999999999 63 578999
Q ss_pred ec------CHHHHHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~el~~~ 310 (391)
+| |+.....+.+++.+++++
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~ 182 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTE 182 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99 788888899999888643
No 398
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=1.5e-12 Score=124.15 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=40.8
Q ss_pred HhhhchhHHhhcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
..+..+. .||+||+||+++|+++ + ..|+++++| |+.....+.+++.++.
T Consensus 159 ~~~~~~~---~lS~G~~qr~~la~al-~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~ 217 (251)
T cd03273 159 VWKESLT---ELSGGQRSLVALSLIL-ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF 217 (251)
T ss_pred hhccccc---ccCHHHHHHHHHHHHH-HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc
Confidence 3345555 8999999999999988 5 578999999 7888888889888874
No 399
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.5e-12 Score=129.77 Aligned_cols=143 Identities=23% Similarity=0.282 Sum_probs=91.8
Q ss_pred cCCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+|+..|+|.| +....+..++|-| -...++||||||+||||||.+|.|.+ .|..|+.+-+
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl------------~P~~GE~RKn------- 647 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL------------DPNDGELRKN------- 647 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC------------CCCcchhhcc-------
Confidence 3445566666 4555667777777 45789999999999999999999999 7887775432
Q ss_pred ccccCCCcceeeeEEEEeccCCCc--ccCCc------ccc------hHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY--LADTP------GFN------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~--l~Dtp------g~~------~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
.+-+++++.+.++-. ...|| +|+ ...|-.+++...++..- ...|||||+-||+||
T Consensus 648 ---------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik--ikdLSGGQKaRVala 716 (807)
T KOG0066|consen 648 ---------HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK--IKDLSGGQKARVALA 716 (807)
T ss_pred ---------ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe--eeecCCcchHHHHHH
Confidence 122333333332111 11222 111 12233344443333221 127999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
... +..|+++|+| |.++...+.+.|.+..
T Consensus 717 eLa-l~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 717 ELA-LGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred HHh-cCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 877 8999999999 6777777777666643
No 400
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=125.44 Aligned_cols=145 Identities=28% Similarity=0.362 Sum_probs=108.8
Q ss_pred cccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC-----
Q 016339 73 PVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES----- 146 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~----- 146 (391)
.+.-.|+|+.+..+.+|.+ -+..|.+|...... .+..+|++||+||++++....|..+|.+-++..+++|.-.
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~-~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~ 249 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP-SKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQL 249 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhcccc-ccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccc
Confidence 4678899999999999954 56789999864333 3667889999999999999999999988777777777522
Q ss_pred -c-------cchHHHhhc------------c---c-----------------------C------CEEEEEecCCCcHHH
Q 016339 147 -K-------LGLDSLLQR------------L---R-----------------------D------QTTVIVGPSGVGKSS 174 (391)
Q Consensus 147 -~-------~~L~~ls~~------------i---~-----------------------G------e~vaLvGpSGsGKST 174 (391)
. ...++++.. + + | -++|+||-+++||||
T Consensus 250 ~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSS 329 (562)
T KOG1424|consen 250 ESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSS 329 (562)
T ss_pred cccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhH
Confidence 1 111111100 0 0 0 478999999999999
Q ss_pred HHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHH
Q 016339 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 175 LLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
+||+|+|.- ...|+..+| -|++++-+++..+..+.|+||...+.
T Consensus 330 TINaLvG~K-------------------------kVsVS~TPG----kTKHFQTi~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 330 TINALVGRK-------------------------KVSVSSTPG----KTKHFQTIFLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred HHHHHhcCc-------------------------eeeeecCCC----CcceeEEEEcCCCceecCCCCccccC
Confidence 999999975 235677777 56777778888888899999976554
No 401
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.32 E-value=5.5e-13 Score=135.95 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=88.2
Q ss_pred EEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-cccccccccc
Q 016339 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS 216 (391)
Q Consensus 140 v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~~ 216 (391)
+.|.|.++ ..+++++|-+ .+..+++||||||||||||++++|.+ .|+.|.+.-+- ..+....++
T Consensus 395 v~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl------------~p~~G~vs~~~H~~~~~y~Qh- 461 (614)
T KOG0927|consen 395 VSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL------------QPTIGMVSRHSHNKLPRYNQH- 461 (614)
T ss_pred cccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc------------ccccccccccccccchhhhhh-
Confidence 44445433 4667777777 78899999999999999999999999 88888875332 222222221
Q ss_pred CCCcceeeeEEE--EeccCCC-cccC-C-cccchHHHHhCChhHHhh-hchhHHhhcCcccccccccccccccCCCcEEE
Q 016339 217 GRGKHTTRHVSL--LPLSGGG-YLAD-T-PGFNQPSLLKVTKQSLAQ-TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290 (391)
Q Consensus 217 ~~~~~ttr~i~~--v~~~~~~-~l~D-t-pg~~~~~l~~~~~~~l~~-~~p~~~~~LSgGq~qr~~iaralh~~eP~~ll 290 (391)
.....-+ -++.+-. ...| + -+.....+..+++..-.. ..-. +||+|||.||.||+.. +..|.++|
T Consensus 462 -----~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~---~LS~Gqr~rVlFa~l~-~kqP~lLl 532 (614)
T KOG0927|consen 462 -----LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMS---QLSDGQRRRVLFARLA-VKQPHLLL 532 (614)
T ss_pred -----hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchh---hcccccchhHHHHHHH-hcCCcEEE
Confidence 1100000 0000000 0001 0 011122334455543332 3333 8999999999999999 99999999
Q ss_pred ec------CHHHHHHHHHHHHH
Q 016339 291 KG------DWERYQYYFQLLDE 306 (391)
Q Consensus 291 lD------D~~~~~~~~~ll~e 306 (391)
+| |.+....+.+.|.+
T Consensus 533 LDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 533 LDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred ecCCCcCCCchhHHHHHHHHhc
Confidence 99 66666666666655
No 402
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.27 E-value=8.4e-12 Score=115.61 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=76.1
Q ss_pred CEEEEEecCCCcHHHHHHHHh----cCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC
Q 016339 160 QTTVIVGPSGVGKSSLINALR----SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~----gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~ 235 (391)
.+++|+||||||||||+++|. |.. .|..|.+..+...+.. .. ....+.+.++...+
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~------------~~~~~~~~~~~~~i~~-~~-------~~~~v~~~f~~~~~ 82 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGEL------------PPNSKGGAHDPKLIRE-GE-------VRAQVKLAFENANG 82 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCC------------CcccccccchHHHHhC-CC-------CcEEEEEEEEeCCC
Confidence 399999999999999999995 766 5555544311111111 00 12234444433210
Q ss_pred ---------cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccc------cccccccccCCCcEEEec------CH
Q 016339 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK------CSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 236 ---------~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr------~~iaralh~~eP~~lllD------D~ 294 (391)
.+.++-.+.. .-......+..+. .||+||+|+ +++|+++ ...|+++++| |+
T Consensus 83 ~~~~v~r~~~~~~~~~~~~----~~~~~~~~~~~~~---~LS~G~~~~~~la~rlala~al-~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 83 KKYTITRSLAILENVIFCH----QGESNWPLLDMRG---RCSGGEKVLASLIIRLALAETF-GSNCGILALDEPTTNLDE 154 (204)
T ss_pred CEEEEEEEhhHhhceeeec----hHHHHHHHhcCcc---ccCccHHHHHHHHHHHHHHHHh-ccCCCEEEEcCCccccCH
Confidence 0111100000 0012234455666 999999996 7889999 9999999999 77
Q ss_pred HHHH-HHHHHHHHHHHH
Q 016339 295 ERYQ-YYFQLLDEIRIR 310 (391)
Q Consensus 295 ~~~~-~~~~ll~el~~~ 310 (391)
.... .+.+++.+++..
T Consensus 155 ~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 155 ENIEESLAEIIEERKSQ 171 (204)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 8888 899999888653
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.24 E-value=3e-12 Score=130.12 Aligned_cols=199 Identities=17% Similarity=0.137 Sum_probs=107.5
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec-CccccccccccCCCcceee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVSTKSGRGKHTTR 224 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~-g~~v~~v~~~~~~~~~ttr 224 (391)
...+..++|.+ +|-.+.|.||||||||||.++|.|++ +...|...+- ...+-+++|+|-.+..+-+
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW------------Pvy~g~L~~P~~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW------------PVYNGLLSIPRPNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC------------cccCCeeecCCCcceEeccCCCccCcCccc
Confidence 34678899999 89999999999999999999999998 3333333221 1123345555433222223
Q ss_pred eEEEEeccCCCcccCCcccchHH----HHhCChhHHhhh------chhHHhhcCcccccccccccccccCCCcEEEec--
Q 016339 225 HVSLLPLSGGGYLADTPGFNQPS----LLKVTKQSLAQT------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-- 292 (391)
Q Consensus 225 ~i~~v~~~~~~~l~Dtpg~~~~~----l~~~~~~~l~~~------~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-- 292 (391)
+-..+|.....+ ...|+.+.. +..+.++.++.+ ..+-.+.|||||+||+.+||.. -|.|..+++|
T Consensus 563 DQIIYPdS~e~~--~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~-yHrPkyalLDEc 639 (728)
T KOG0064|consen 563 DQIIYPDSSEQM--KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF-YHRPKYALLDEC 639 (728)
T ss_pred ceeecCCcHHHH--HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-hcCcchhhhhhh
Confidence 322222210000 012343333 223444444332 1223458999999999999999 9999999999
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhh--hhhhhhcccccccccccccCcccccCCccccccccccchhhhhHHHHHHHhh
Q 016339 293 ----DWERYQYYFQLLDEIRIREEF--QLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDE 365 (391)
Q Consensus 293 ----D~~~~~~~~~ll~el~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~~rr~~~~~~~~~~~~ 365 (391)
.++....+.+..+......-. +..+...-. .--+..++.|.-+-++.-. .-|-|-..+.|+|.+.|+.
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h--~~ll~~dg~g~~q~~~ln~---~~rls~~Eek~eLe~qLa~ 713 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH--THLLEFDGEGGWQFRALNT---EERLSIEEEKQELESQLAR 713 (728)
T ss_pred hcccccchHHHHHHHHHhcCceEEEeecCccHHHHH--HHHHhccCCCCeeeccCCh---hhhcccHHHHHHHHHHHhh
Confidence 233333444444432111000 001100001 1112224444444444322 4456667788888777754
No 404
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.22 E-value=5.8e-12 Score=112.50 Aligned_cols=143 Identities=21% Similarity=0.242 Sum_probs=88.6
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
|-.+|..+ .|+++-+|||||||||||+-.++|+. |-+|+|.|+|.++...+... ..++-+|
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~e-----LArhRAY 76 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATE-----LARHRAY 76 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhH-----HHHHHHH
Confidence 44555666 79999999999999999999999985 78999999999875443221 1233333
Q ss_pred EeccCCC--------cc-cCCccc-chHHHHhC-ChhHHhhhchhHHhhcCcccccccccccccccCCC------cEEEe
Q 016339 229 LPLSGGG--------YL-ADTPGF-NQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP------GCVVK 291 (391)
Q Consensus 229 v~~~~~~--------~l-~Dtpg~-~~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP------~~lll 291 (391)
+.+...- |+ .-.|.. +...+..+ +.-.+-++.+....+|||||=|||.+|-...---| .++++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 3332110 00 011211 11112211 22234456666666999999999999854323333 46788
Q ss_pred c------CHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~ 310 (391)
| |......+-.++.++...
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhC
Confidence 8 555556666777776654
No 405
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=2.7e-11 Score=111.77 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=79.2
Q ss_pred hHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEE
Q 016339 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (391)
Q Consensus 150 L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v 229 (391)
++++.+.+...+.+|+||||+|||||+.+|.....+ ... ...-+.....+-.. + . ....+.+.
T Consensus 12 ~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~------------~~~-~~~r~~~~~~~i~~-~--~-~~~~i~~~ 74 (198)
T cd03276 12 HRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGG------------KAS-DTNRGSSLKDLIKD-G--E-SSAKITVT 74 (198)
T ss_pred eeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcC------------Ccc-cccccccHHHHhhC-C--C-CeEEEEEE
Confidence 344555554458899999999999999998754310 000 00001111111110 1 0 12334555
Q ss_pred eccCCCcccCCccc--chHHH-HhCChhHHhhhchhHHhhcCcccccccccccccc---cCCCcEEEec------CHHHH
Q 016339 230 PLSGGGYLADTPGF--NQPSL-LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH---LGEPGCVVKG------DWERY 297 (391)
Q Consensus 230 ~~~~~~~l~Dtpg~--~~~~l-~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~ 297 (391)
+...+.+ +++.. ....+ ..+......+..+. .||+||+||++||+|+- +.+|+++|+| |+...
T Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~---~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 75 LKNQGLD--ANPLCVLSQDMARSFLTSNKAAVRDVK---TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred EEcCCcc--CCcCCHHHHHHHHHHhccccccCCccc---ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 5443322 22221 11111 11111334455666 99999999999999882 3899999999 77888
Q ss_pred HHHHHHHHHHHH
Q 016339 298 QYYFQLLDEIRI 309 (391)
Q Consensus 298 ~~~~~ll~el~~ 309 (391)
..+.++|.++..
T Consensus 150 ~~~~~~l~~~~~ 161 (198)
T cd03276 150 KISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHHHHHh
Confidence 888888888754
No 406
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.21 E-value=1.7e-11 Score=112.42 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=115.7
Q ss_pred eeEEEEc----CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 138 EPLFCSV----ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 138 ~~v~~s~----~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.++++.+ |-..+++.+|+++ +|++-++||.||||||-+.++|.|... ++| ..+.....|++.++-.+
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k-------dnW-~vTADR~Rf~~idLL~L 78 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-------DNW-RVTADRMRFDDIDLLRL 78 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc-------cce-EEEhhhcccccchhhcC
Confidence 4454444 4456899999999 999999999999999999999999862 111 33455566777666666
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----------ccC-Ccccc----------------hHHHHhCChh---HHhhhchh
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----------LAD-TPGFN----------------QPSLLKVTKQ---SLAQTFPE 262 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----------l~D-tpg~~----------------~~~l~~~~~~---~l~~~~p~ 262 (391)
+++. +.+-..++++++|++.... +++ .|... -..+..+++. ++...||.
T Consensus 79 ~Pr~-RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ 157 (330)
T COG4170 79 SPRE-RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY 157 (330)
T ss_pred ChHH-hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc
Confidence 5542 2222346788888762211 111 13211 1223355553 56778899
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+|..||-|+|.||.|+ ++.|.++|.| ++....+++.+|..+++....
T Consensus 158 ---ElTeGE~QKVMIA~A~-AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~T 210 (330)
T COG4170 158 ---ELTEGECQKVMIAIAL-ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT 210 (330)
T ss_pred ---hhccCcceeeeeehhh-ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCc
Confidence 9999999999999999 9999999999 677889999999999876544
No 407
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.21 E-value=8.3e-12 Score=119.88 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=44.7
Q ss_pred hCChhH-HhhhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++.. .++..+. .|||||+||+++|+++ ..+ |+++|+| |+.....+.+++.++.+.
T Consensus 155 ~vgL~~l~l~~~~~---~LSgGe~QRl~LAraL-~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 155 DVGLGYIKLGQPAT---TLSGGEAQRIKLAKEL-SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HcCCchhhhcCccc---cCCHHHHHHHHHHHHH-hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 344443 2344444 8999999999999999 664 7999999 888999999999988654
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.18 E-value=4.2e-11 Score=119.13 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=98.3
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++||+.+ .|++++|+|+||+||||++++|+|..- ....+.+.|++|.+.+-...++.+-+ +.....-..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~ee~y~p~sg~v~vp~nt~~a~iP--ge~Ep~f~~ 469 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGEEKYRPDSGKVEVPKNTVSALIP--GEYEPEFGE 469 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccccccCCCCCceeccccchhhccC--cccccccCc
Confidence 45789999999 899999999999999999999999752 23456679999998764332322211 100000011
Q ss_pred EEEEeccCCCcccCCccc---chHHHHhCChhH--HhhhchhHHhhcCcccccccccccccccCCCcEEEec------CH
Q 016339 226 VSLLPLSGGGYLADTPGF---NQPSLLKVTKQS--LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DW 294 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~---~~~~l~~~~~~~--l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~ 294 (391)
..++. .+.+++|- ....+...++.+ +-...+. .||.||+.|..||.|+ ...|++++.| |+
T Consensus 470 ~tile-----hl~s~tGD~~~AveILnraGlsDAvlyRr~f~---ELStGQKeR~KLAkll-aerpn~~~iDEF~AhLD~ 540 (593)
T COG2401 470 VTILE-----HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS---ELSTGQKERAKLAKLL-AERPNVLLIDEFAAHLDE 540 (593)
T ss_pred hhHHH-----HHhhccCchhHHHHHHHhhccchhhhhhccHh---hcCcchHHHHHHHHHH-hcCCCcEEhhhhhhhcCH
Confidence 11110 12233333 444555555543 2223344 8999999999999999 9999999998 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016339 295 ERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 295 ~~~~~~~~ll~el~~~~ 311 (391)
.....+..-+.++..+.
T Consensus 541 ~TA~rVArkiselaRe~ 557 (593)
T COG2401 541 LTAVRVARKISELAREA 557 (593)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666665443
No 409
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.16 E-value=6.2e-11 Score=112.83 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=37.7
Q ss_pred hcCcccccccccccccccC----CCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG----EPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~----eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.||+||+||++||+++ +. .|+++|+| |+.....+.+++.++..
T Consensus 155 ~LS~G~k~rl~la~al-~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~ 207 (247)
T cd03275 155 NLSGGEKTMAALALLF-AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG 207 (247)
T ss_pred HcCHHHHHHHHHHHHH-HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc
Confidence 8999999999999998 54 48999999 78888888898888754
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=114.05 Aligned_cols=148 Identities=28% Similarity=0.370 Sum_probs=106.1
Q ss_pred cccccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~ 149 (391)
+..+...|.|+-|..+..|.-. ...+++.+..+ ..+++.++||||+||+|.+.+++|..+|+.-|-.+.+..-.....
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-HGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-cCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 4467899999999999999544 55778776432 234999999999999999999999999988766555544322211
Q ss_pred h-------------HHHhhcc----c------CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 150 L-------------DSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 150 L-------------~~ls~~i----~------Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
- +.+--.+ . --.++|||-+++||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 1 1111111 1 1378999999999999999998765
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHH
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l 248 (391)
+..+...+| .|+.+..+.++.+..+.|.||+.....
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCC
Confidence 122333344 788888888888888999999865443
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=1.7e-11 Score=135.92 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=106.9
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc-cccccCCCcce
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VSTKSGRGKHT 222 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-v~~~~~~~~~t 222 (391)
++.+.|++|+=.+ +|..+||+|+||||||||||.|+|.... --.+|+|.++|..... . .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~----------G~I~Gdi~i~G~p~~q~t---------F 862 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG----------GYIEGDILISGFPKDQET---------F 862 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc----------ceEEeEEEECCeeCchhh---------h
Confidence 5667899999888 8999999999999999999999998632 3468999999876541 1 1
Q ss_pred eeeEEEEeccC-C---C----------ccc--------CCcccchHHHHhCChhHHhhhchh-HHhhcCccccccccccc
Q 016339 223 TRHVSLLPLSG-G---G----------YLA--------DTPGFNQPSLLKVTKQSLAQTFPE-IKEMLKANEPAKCSFNN 279 (391)
Q Consensus 223 tr~i~~v~~~~-~---~----------~l~--------Dtpg~~~~~l~~~~~~~l~~~~p~-~~~~LSgGq~qr~~iar 279 (391)
.|.++++.|.. + . .+. +...+.+..++.++++++++.... -..-||..||+|+.||=
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence 23445554431 0 0 011 001234445556677777665433 01349999999999999
Q ss_pred ccccCCC-cEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 280 CLHLGEP-GCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 280 alh~~eP-~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
=| +.+| .++++| |......++++++++....+.
T Consensus 943 EL-vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 943 EL-VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred EE-ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 99 9999 677788 788889999999999876555
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.11 E-value=3.5e-11 Score=120.83 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=88.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc---------c--eecCccccccccccCCCcc-eeee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS---------K--WFEDQRVGEVSTKSGRGKH-TTRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~---------I--~~~g~~v~~v~~~~~~~~~-ttr~ 225 (391)
+|++++|+||||.||||.+++|+|.. .|.-|+ | .|-|..+...+...-.+.- ....
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel------------~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K 166 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGEL------------KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHK 166 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCcc------------ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecc
Confidence 79999999999999999999999998 444332 1 2333333222221100000 0111
Q ss_pred EEE---EeccCCCc------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH-
Q 016339 226 VSL---LPLSGGGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE- 295 (391)
Q Consensus 226 i~~---v~~~~~~~------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~- 295 (391)
.++ ++--..|. ..|..|..+..++.+++..+.++-.. .|||||.||++||.|+ ..+.++.++|.|.
T Consensus 167 ~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~---~LSGGELQr~aIaa~l-~rdADvY~FDEpsS 242 (591)
T COG1245 167 PQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVS---ELSGGELQRVAIAAAL-LRDADVYFFDEPSS 242 (591)
T ss_pred hHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhh---hcCchHHHHHHHHHHH-hccCCEEEEcCCcc
Confidence 111 22112222 23456777777788888888888777 9999999999999999 9999999999544
Q ss_pred -----HHHHHHHHHHHHHH
Q 016339 296 -----RYQYYFQLLDEIRI 309 (391)
Q Consensus 296 -----~~~~~~~ll~el~~ 309 (391)
.+-....+++++.+
T Consensus 243 yLDi~qRl~~ar~Irel~~ 261 (591)
T COG1245 243 YLDIRQRLNAARVIRELAE 261 (591)
T ss_pred cccHHHHHHHHHHHHHHhc
Confidence 44444455666554
No 413
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.08 E-value=1.2e-09 Score=112.14 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=78.1
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-eEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~-~v~~s~~~~~ 148 (391)
...+.++|.+++|+....+. .....+.++| +..++++++|+||+|+.+.+.. ...+..+|+. .+.+|..++.
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCC
Confidence 34578999999999987642 2233455555 4568999999999998653211 1344567874 7889998888
Q ss_pred chHHHhhcc--------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i--------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++-..+ ..-.++|+|.+|+|||||+|.|.|..
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 777765444 12369999999999999999999865
No 414
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.05 E-value=2.4e-10 Score=104.58 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=92.6
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+..+.++|. ....+-++|+.+ .|....+||.|||||||||++|+|.. -.-.|.|.+.|.+.-.
T Consensus 15 evsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh------------mv~~~~v~VlgrsaFh-- 80 (291)
T KOG2355|consen 15 EVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH------------MVGGGVVQVLGRSAFH-- 80 (291)
T ss_pred EEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc------------cccCCeEEEcCcCccc--
Confidence 3456677774 346778888888 79999999999999999999999987 3333556555543200
Q ss_pred cccCCCcceeeeEEEEecc--------------CC--------CcccCCcccchHHHHhCChhHHhhhchhHHhhcCccc
Q 016339 214 TKSGRGKHTTRHVSLLPLS--------------GG--------GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANE 271 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~--------------~~--------~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq 271 (391)
+.+. ....+..|+.-+ .. +.-.+.|..+++.+..+++. +..+ -+ .+|.||
T Consensus 81 -Dt~l--~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId-l~WR-mH---kvSDGq 152 (291)
T KOG2355|consen 81 -DTSL--ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID-LRWR-MH---KVSDGQ 152 (291)
T ss_pred -cccc--cccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc-ceEE-Ee---eccccc
Confidence 0000 000112222111 00 00112233333333222221 1111 23 689999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|++|++-| ++.-+++++| |.-.+..+++++++-.++
T Consensus 153 rRRVQicMGL-L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~ 196 (291)
T KOG2355|consen 153 RRRVQICMGL-LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ 196 (291)
T ss_pred hhhhHHHHhc-ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh
Confidence 9999999999 8888999998 667888888888875443
No 415
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.05 E-value=1.4e-09 Score=111.26 Aligned_cols=107 Identities=26% Similarity=0.466 Sum_probs=79.7
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~ 148 (391)
...+.++|.+++|+....+. .....+.++| +..++++++|+||+|+...+... ..+..+|+ +.+.+|..++.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGR 146 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCC
Confidence 34678999999999887642 2233456666 45789999999999997654321 34567888 78999998888
Q ss_pred chHHHhhcc------cC---------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL------RD---------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i------~G---------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++...+ .+ -.++++|.+|||||||+|.|.|..
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 877665443 11 258999999999999999999865
No 416
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.04 E-value=7.5e-11 Score=120.57 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=45.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+-+.+++++|.....++++.|++ .|+.++|+|+|||||||+|++|.|..
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 34578899999999999999999 99999999999999999999999988
No 417
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1e-10 Score=118.90 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
-...+.++|+.+..|.+-++.+ .|..++|+|+||+||||||++|+.
T Consensus 82 ~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 82 HIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3467888999999999999999 899999999999999999999997
No 418
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.02 E-value=2.3e-09 Score=111.43 Aligned_cols=107 Identities=29% Similarity=0.394 Sum_probs=76.7
Q ss_pred cccccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~ 148 (391)
...+.++|.+++|+.+..+. .....+.+++ ...++|+++|+||+|+..... + . ..+..+|+ .++.+|..++.
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~-~-~-~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEA-D-A-AALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccch-h-h-HHHHhcCCCCeEEEEcCCCC
Confidence 34577999999999987652 2233344444 567899999999999965321 1 1 23345666 56889998888
Q ss_pred chHHHhhcc-----c----------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i-----~----------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++-..+ + .-.++|+|++|||||||+|.|++..
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 877764333 1 1379999999999999999999875
No 419
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.99 E-value=5e-10 Score=115.28 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=99.8
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~ 227 (391)
.++++||++ +||+++|.|-=|||+|-|+++|.|.. ++.+|+|.++|+.+..-++... ....++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~------------~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR------------PASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC------------cCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 488999999 99999999999999999999999987 8899999999997754443211 123344
Q ss_pred EEeccCC--Cc-----ccCCcc-----------cchHHHHhC----ChhHHhhhchh---HHhhcCcccccccccccccc
Q 016339 228 LLPLSGG--GY-----LADTPG-----------FNQPSLLKV----TKQSLAQTFPE---IKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 228 ~v~~~~~--~~-----l~Dtpg-----------~~~~~l~~~----~~~~l~~~~p~---~~~~LSgGq~qr~~iaralh 282 (391)
|++-+.. |. +.+|-. +....-+.. -...+.-+.|. ....||||-||+|.||+++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL- 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL- 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-
Confidence 4444311 11 111100 000000000 00001111111 1238999999999999999
Q ss_pred cCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 283 LGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 283 ~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
..+|+++|+| |...+..+++++.++..+...
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~a 453 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCE
Confidence 9999999999 778999999999999877444
No 420
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.99 E-value=6.2e-10 Score=109.90 Aligned_cols=109 Identities=26% Similarity=0.337 Sum_probs=81.6
Q ss_pred cccccceeEEEEEecCCC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEE------EEcC
Q 016339 73 PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF------CSVE 145 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~-~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~------~s~~ 145 (391)
.+-..|.++-|+.+..|. .....++.||.. +...+..+.|||||||++......|...+.. .|..+. -+||
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSk-eyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSK-EYPTIAFHASINNSFG 287 (572)
T ss_pred hhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhh-hCcceeeehhhcCccc
Confidence 356889999999998884 446789999963 5678899999999999999999999887754 344443 3556
Q ss_pred CccchHHHhh----cc--cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQ----RL--RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~----~i--~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..+.-+.. .. +--.+++||-+++||||+||+|....
T Consensus 288 KgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred hhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc
Confidence 5543332221 11 34578999999999999999998764
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.97 E-value=1.1e-09 Score=126.95 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=46.5
Q ss_pred hCChhHH-hhhchhHHhhcCccccccccccccccc---CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHL---GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~---~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++..+ ++..+. .|||||+||++||+++ + .+|+++|+| |+.....++++|.++.+.
T Consensus 795 ~vGL~~l~l~q~~~---tLSGGE~QRV~LAraL-~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~ 861 (1809)
T PRK00635 795 SLGLDYLPLGRPLS---SLSGGEIQRLKLAYEL-LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861 (1809)
T ss_pred HcCCcchhhcCccc---cCCHHHHHHHHHHHHH-hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3444443 455555 8999999999999999 5 699999999 889999999999998754
No 422
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.95 E-value=5.6e-09 Score=113.66 Aligned_cols=106 Identities=26% Similarity=0.350 Sum_probs=76.7
Q ss_pred ccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCccc
Q 016339 72 PPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~~~ 149 (391)
..+.++|.+++|+....... ....+.++| +..++|+++|+||+|+...... ...+..+|+ .++.+|..++.+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 35689999999999875422 233455555 5689999999999999654321 123445666 467889988888
Q ss_pred hHHHhhcc-----c----C--------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 150 LDSLLQRL-----R----D--------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 150 L~~ls~~i-----~----G--------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++++-..+ . . -.++|+|.+|||||||+|.|.+..
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 87765433 1 1 369999999999999999999865
No 423
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.79 E-value=1.6e-08 Score=94.31 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred hcCcccccccccccccc---cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLH---LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+|++.++.++. +.+|+++|+| |+.....+++++.++...
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~ 179 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACK 179 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhc
Confidence 89999999987765431 5799999999 788889999999887654
No 424
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.75 E-value=1.4e-08 Score=92.23 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=37.3
Q ss_pred cCcccccccccccccc---cCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLH---LGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh---~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||+|++++|+++- ...|+++++| |+.....+.+++.++...
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999882 2689999999 788888888888887543
No 425
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.9e-09 Score=108.55 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC-ccccccccccCCCcceeeeE
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKSGRGKHTTRHV 226 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g-~~v~~v~~~~~~~~~ttr~i 226 (391)
.+.++++.+ ....++++|+||+||||+++++.+.. .|+.|.+.+.+ +++++..+..- .+...++
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l------------~~~rgi~~~~~r~ri~~f~Qhhv--d~l~~~v 444 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL------------TPTRGIVGRHPRLRIKYFAQHHV--DFLDKNV 444 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccC------------CcccceeeecccceecchhHhhh--hHHHHHh
Confidence 555666666 45679999999999999999999988 77877775543 34444333210 0000111
Q ss_pred EEEeccCCCcccCCcccc----hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHH
Q 016339 227 SLLPLSGGGYLADTPGFN----QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWER 296 (391)
Q Consensus 227 ~~v~~~~~~~l~Dtpg~~----~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~ 296 (391)
..+. ..-.--||.. ...+..+++..-+...+ -..|||||+-|++||.|. ..+|.++|+| |.+.
T Consensus 445 ~~vd----~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i~~LSGGQKsrvafA~~~-~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 445 NAVD----FMEKSFPGKTEEEIRRHLGSFGLSGELALQS--IASLSGGQKSRVAFAACT-WNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred HHHH----HHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--ccccCCcchhHHHHHHHh-cCCCcEEEecCCCccccHHH
Confidence 0000 0011114433 33455666654333333 127999999999999999 9999999999 4455
Q ss_pred HHHHHHHHHH
Q 016339 297 YQYYFQLLDE 306 (391)
Q Consensus 297 ~~~~~~ll~e 306 (391)
...+-+.|..
T Consensus 518 l~AL~~Al~~ 527 (582)
T KOG0062|consen 518 LGALAKALKN 527 (582)
T ss_pred HHHHHHHHHh
Confidence 5555444444
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.72 E-value=7e-09 Score=86.31 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=41.2
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
..+|+++++.+ +|++++|+||||||||||+++|. +|.+.++|.++.....
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------------------~G~i~~~g~di~~~~~ 52 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------------------KRKHRLVGDDNVEIRE 52 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------------------CCeEEEeeEeHHHhhh
Confidence 35788999999 78999999999999999999975 2567787877765554
No 427
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.72 E-value=1.2e-08 Score=103.79 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=100.7
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc-cccccccCCCcceeee
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV-GEVSTKSGRGKHTTRH 225 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v-~~v~~~~~~~~~ttr~ 225 (391)
..+++|||++ .||+++|.|-+|-|-|-|+.+|+|+. +|.+|+|.++|.++ +..+.... ....
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr------------~~~~G~I~l~G~~v~~~~~~~~~----r~~G 335 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR------------KPASGRILLNGKDVLGRLSPRER----RRLG 335 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC------------ccCCceEEECCEeccccCCHHHH----HhcC
Confidence 6799999999 89999999999999999999999998 88889999999987 32222110 1234
Q ss_pred EEEEeccCC--C-----cccCC--------c-----ccc-hHHHHhCChhHHhhhc------hh-HHhhcCccccccccc
Q 016339 226 VSLLPLSGG--G-----YLADT--------P-----GFN-QPSLLKVTKQSLAQTF------PE-IKEMLKANEPAKCSF 277 (391)
Q Consensus 226 i~~v~~~~~--~-----~l~Dt--------p-----g~~-~~~l~~~~~~~l~~~~------p~-~~~~LSgGq~qr~~i 277 (391)
++++|-+.. + .+.++ + ++. ...+... ...+...| |. -...||||.+||+-+
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-ARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-HHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 455554411 1 01111 1 111 1111111 01111111 11 124899999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
||=+ ..+|+++|.. |....+.+.+.|.+++.....
T Consensus 415 aREl-~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~A 455 (501)
T COG3845 415 AREL-ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKA 455 (501)
T ss_pred hhhh-ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCE
Confidence 9999 8999999997 888999999988888776544
No 428
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=6.4e-09 Score=115.15 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=39.5
Q ss_pred hcCcccccccccccccccC---CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG---EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~---eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +. +|.++|+| |+.....++++|.++...
T Consensus 828 tLSgGe~QRl~LA~aL-~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~ 880 (924)
T TIGR00630 828 TLSGGEAQRIKLAKEL-SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ 880 (924)
T ss_pred cCCHHHHHHHHHHHHH-hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999 65 59999999 889999999999998654
No 429
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.70 E-value=8.9e-09 Score=105.45 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=44.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cceecCcccccc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEV 212 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~~~g~~v~~v 212 (391)
.+|++|++.+ +|++++|+|||||||||||+ +|+. .|++| +|.++|.++...
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~------------~~~sGg~I~ldg~~~~~~ 72 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR------------KFSEGYEFFLDATHSFSP 72 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC------------CCCCCCEEEECCEECCCC
Confidence 4789999999 89999999999999999999 6776 77777 799999887553
No 430
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.70 E-value=1.8e-08 Score=92.90 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=33.1
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHHH-HHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYF-QLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~-~ll~el~~ 309 (391)
.+|+||+|+..+++++ .+|+++++| |+.....+. .+++++.+
T Consensus 91 ~fs~g~~~~~~i~~~~--~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~ 139 (200)
T cd03280 91 TFSSHMKNIARILQHA--DPDSLVLLDELGSGTDPVEGAALAIAILEELLE 139 (200)
T ss_pred hHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7899999999998775 689999999 677666664 56777654
No 431
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.69 E-value=3.6e-08 Score=109.46 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=40.3
Q ss_pred hcCcccccccccccccccCCC---cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEP---GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP---~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ +.+| .++|+| |+.....++++|.++.+.
T Consensus 830 tLSgGEkQRl~LAraL-~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~ 882 (943)
T PRK00349 830 TLSGGEAQRVKLAKEL-SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK 882 (943)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999 8888 899999 888999999999998754
No 432
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.66 E-value=3e-08 Score=88.39 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=36.8
Q ss_pred hcCcccccccccccccccC----CCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLG----EPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~----eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.||+||+|++++++++ .. +|+++++| |+.....+.+.+.++..+
T Consensus 77 ~lS~G~~~~~~la~~L-~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 77 QLSGGEKELSALALIL-ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred eccccHHHHHHHHHHH-HhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4999999999999999 54 78999999 788888888888776543
No 433
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.56 E-value=2.8e-08 Score=99.59 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc-ceecCccccccccccCCCcceeeeEEEEeccCCCcc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS-KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~-I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l 237 (391)
.++++.+|.||.||||||++|+|.. +|++|. +-. ..++.-+++.......+ + .+.....+
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~------------~pd~~~e~p~--lnVSykpqkispK~~~t--v---R~ll~~kI 427 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRL------------KPDEGGEIPV--LNVSYKPQKISPKREGT--V---RQLLHTKI 427 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCC------------CCCccCcccc--cceeccccccCccccch--H---HHHHHHHh
Confidence 3689999999999999999999988 676653 211 11222222211000001 0 00000111
Q ss_pred ---cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH
Q 016339 238 ---ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (391)
Q Consensus 238 ---~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~ 295 (391)
.-.|.|....+..+.++.+.+.--. .|||||+||+++|.|+ -...++.+.|.|.
T Consensus 428 r~ay~~pqF~~dvmkpL~ie~i~dqevq---~lSggelQRval~KOG-GKpAdvYliDEps 484 (592)
T KOG0063|consen 428 RDAYMHPQFVNDVMKPLQIENIIDQEVQ---GLSGGELQRVALALCL-GKPADVYLIDEPS 484 (592)
T ss_pred HhhhcCHHHHHhhhhhhhHHHHHhHHhh---cCCchhhHHHHHHHhc-CCCCceEEecCch
Confidence 1235555555556666677666444 8999999999999999 7778999999554
No 434
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.54 E-value=8.4e-08 Score=92.70 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=38.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
..++|+||||||||||+++|+|.. .|.+|++.++|+++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~------------~~~~G~i~~~g~~v~~~ 152 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL------------STGISQLGLRGKKVGIV 152 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc------------CCCCceEEECCEEeecc
Confidence 578999999999999999999999 99999999999988644
No 435
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=9.5e-08 Score=92.50 Aligned_cols=44 Identities=11% Similarity=-0.070 Sum_probs=36.7
Q ss_pred hcCcccccccccccccc-cC--CCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLH-LG--EPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh-~~--eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||+++|+++- .. .|+++++| |+.....+.+++.++..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~ 222 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR 222 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 59999999999998651 22 99999999 78888899999988754
No 436
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.42 E-value=4.6e-07 Score=87.71 Aligned_cols=147 Identities=29% Similarity=0.333 Sum_probs=87.4
Q ss_pred cccccceeEEEEEecCCCCCHH-HHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEE-EcCC--c-
Q 016339 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC-SVES--K- 147 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~-~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~-s~~~--~- 147 (391)
...++|.++-|-.+.-|...-. .+.+|+- .++-+||+||+||.++.+.......++.-++....+ +... .
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~~-----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFLP-----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhcC-----CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 4569999999999988865543 4566652 789999999999999765555444444323322211 1111 1
Q ss_pred ---c---chHHHhhcc--------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 148 ---L---GLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 148 ---~---~L~~ls~~i--------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
. .+..++..+ .+-.+.++|-+|+|||||||++...... . .....+.
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr------------k--------~k~a~vG 177 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLR------------K--------KKAARVG 177 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhh------------h--------ccceecc
Confidence 0 111222222 1336889999999999999998876410 0 0112233
Q ss_pred cccCCCcceeeeEEEEec---cCCCcccCCcccchHHH
Q 016339 214 TKSGRGKHTTRHVSLLPL---SGGGYLADTPGFNQPSL 248 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~---~~~~~l~Dtpg~~~~~l 248 (391)
..+| .|+.++..+. ....+++||||+..+.+
T Consensus 178 ~~pG----VT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 178 AEPG----VTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred CCCC----ceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 3333 5555544222 22356899999877643
No 437
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=7.1e-07 Score=99.98 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=96.9
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc---------ccC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST---------KSG 217 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~---------~~~ 217 (391)
..+++++..+ +|+.+.++||+|||||||+++|+|..... .-..|+|.++|.+...... ..-
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~---------~~~~~~isy~G~~~~e~~~~~~~aY~~e~Dv 199 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNF---------LKSSGEITYNGHDLKEFVPKKTVAYNSEQDV 199 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCccc---------ccCCCceeECCCcccccccCceEEecccccc
Confidence 5789999999 89999999999999999999999987211 2235688999877644332 222
Q ss_pred CCcceeeeEEEEe-cc--CCCcccCCccc-------chHHHHhCChhHHhhhch--hHHhhcCcccccccccccccccCC
Q 016339 218 RGKHTTRHVSLLP-LS--GGGYLADTPGF-------NQPSLLKVTKQSLAQTFP--EIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 218 ~~~~ttr~i~~v~-~~--~~~~l~Dtpg~-------~~~~l~~~~~~~l~~~~p--~~~~~LSgGq~qr~~iaralh~~e 285 (391)
..++.|..-.+-+ .. ..+..+|.-.. .+..+..+++..-++.+. ++.+-.|||||+|+.++-.+ +..
T Consensus 200 H~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~-v~~ 278 (1391)
T KOG0065|consen 200 HFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML-VGP 278 (1391)
T ss_pred ccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee-ecC
Confidence 2223331110000 00 00111121001 112223334433333321 23347899999999999999 999
Q ss_pred CcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 286 PGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 286 P~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
+..+..| |....-++.+.++.+.+....
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~ 312 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGA 312 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999 677777777777777654443
No 438
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=98.41 E-value=4.4e-07 Score=68.85 Aligned_cols=49 Identities=31% Similarity=0.488 Sum_probs=40.4
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccccccc
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~ 71 (391)
+..+.|..++.+++....++|||||.++..+ ++.+.|+.++||+|.+.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 20 GKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 5679999999887555679999999997533 566899999999998865
No 439
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.40 E-value=2.3e-07 Score=84.93 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCccc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~ 238 (391)
+--++++|.|+||||||||+|.+.. .+..+|..|| .|+.+-++.......+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k------------------------~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQK------------------------NLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCc------------------------ceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 3458999999999999999999964 2456777777 78888888777667789
Q ss_pred CCcccchHH
Q 016339 239 DTPGFNQPS 247 (391)
Q Consensus 239 Dtpg~~~~~ 247 (391)
|.||+....
T Consensus 76 DlPGYGyAk 84 (200)
T COG0218 76 DLPGYGYAK 84 (200)
T ss_pred eCCCccccc
Confidence 999986543
No 440
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=8.8e-07 Score=85.51 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred hhcCccccccccccccc--------ccCCCcEEEec------CHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCL--------HLGEPGCVVKG------DWERYQYYFQLLDEI 307 (391)
Q Consensus 265 ~~LSgGq~qr~~iaral--------h~~eP~~lllD------D~~~~~~~~~ll~el 307 (391)
..+|+||+|++.+|+++ +..+|+++++| |+.....+++.+.++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 36899999999999986 24799999999 667777777777553
No 441
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.24 E-value=4e-07 Score=84.47 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.3
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+..+.+++++.. .|++++|.||||+||||++++|+++.
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 13 DKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556788899988 67999999999999999999998764
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.22 E-value=1.1e-06 Score=79.98 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=37.9
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
.+-+.+.+ .|+.++|+||||||||||+++|+++. +|+.|.+.+++
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i------------~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI------------PPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEECC
Confidence 34455555 79999999999999999999999998 78888888765
No 443
>COG1159 Era GTPase [General function prediction only]
Probab=98.22 E-value=9.8e-07 Score=85.16 Aligned_cols=58 Identities=36% Similarity=0.527 Sum_probs=42.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEE--EEecc-CCCc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~--~v~~~-~~~~ 236 (391)
.++||+|+++||||||+|.|.|.- ++.+|.++. |||+.. .+..+ ....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~K-------------------------isIvS~k~Q----TTR~~I~GI~t~~~~QiI 57 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQK-------------------------ISIVSPKPQ----TTRNRIRGIVTTDNAQII 57 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCc-------------------------eEeecCCcc----hhhhheeEEEEcCCceEE
Confidence 489999999999999999999975 567777766 665421 22222 2334
Q ss_pred ccCCcccchH
Q 016339 237 LADTPGFNQP 246 (391)
Q Consensus 237 l~Dtpg~~~~ 246 (391)
+.||||+..+
T Consensus 58 fvDTPGih~p 67 (298)
T COG1159 58 FVDTPGIHKP 67 (298)
T ss_pred EEeCCCCCCc
Confidence 7899999765
No 444
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.18 E-value=6.8e-07 Score=82.40 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.|++++|+||||+|||||+++|++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHH
Confidence 5789999999999999999999954
No 445
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.16 E-value=2.3e-06 Score=71.30 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~ 23 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK 23 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST
T ss_pred CEEEECCCCCCHHHHHHHHhccc
Confidence 37999999999999999999853
No 446
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.4e-06 Score=86.10 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=42.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+-++++.+|..++..+.+-++.| .|..++||||||-||||||+.|+...
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 44577888888887888888888 89999999999999999999998753
No 447
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.11 E-value=1.6e-06 Score=80.38 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=32.0
Q ss_pred cccccccccccccCCCcEEEec-----------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG-----------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD-----------D~~~~~~~~~ll~el~ 308 (391)
++++..+|+++ +.+|+++++| |+...+.+.+++.+++
T Consensus 157 ~~~f~~ia~~l-~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRL-TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHH-hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 77778999999 9999999998 6778888888888865
No 448
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.10 E-value=5.8e-06 Score=76.85 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.7
Q ss_pred hcCccccccccccc--ccc-cCCCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNN--CLH-LGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iar--alh-~~eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||+-.+++|- |++ ....+++|+| |..+...+.++|.++....+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999888762 232 3456677887 788999999999987644444
No 449
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.06 E-value=4.1e-06 Score=85.28 Aligned_cols=60 Identities=38% Similarity=0.482 Sum_probs=49.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
+|-.++|+|+++||||||||+|++.. .+.|+.-+| |||++.......+|+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d-------------------------~AIVTdI~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRD-------------------------RAIVTDIAG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCC-------------------------ceEecCCCC----CccceEEEEEEECCEE
Confidence 57899999999999999999999986 345666667 898887777766664
Q ss_pred --ccCCcccchH
Q 016339 237 --LADTPGFNQP 246 (391)
Q Consensus 237 --l~Dtpg~~~~ 246 (391)
+.||.|.++.
T Consensus 267 v~l~DTAGiRet 278 (454)
T COG0486 267 VRLVDTAGIRET 278 (454)
T ss_pred EEEEecCCcccC
Confidence 7899998853
No 450
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=3.9e-06 Score=62.95 Aligned_cols=28 Identities=39% Similarity=0.709 Sum_probs=24.2
Q ss_pred cccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 156 RLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 156 ~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...|.++.|.||||||||||+.+|.-..
T Consensus 20 ~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 20 DPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3357799999999999999999988765
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.98 E-value=6.1e-06 Score=75.79 Aligned_cols=26 Identities=46% Similarity=0.699 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999999986
No 452
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=3.2e-06 Score=79.43 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
....+.+++++.. ++++++|.||||+|||||+++++-
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 3345678888888 789999999999999999999873
No 453
>PRK15494 era GTPase Era; Provisional
Probab=97.97 E-value=7.4e-06 Score=81.75 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=36.9
Q ss_pred CeeEEEEcC-CccchHHHhhcc-cCC-------EEEEEecCCCcHHHHHHHHhcCC
Q 016339 137 YEPLFCSVE-SKLGLDSLLQRL-RDQ-------TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 137 ~~~v~~s~~-~~~~L~~ls~~i-~Ge-------~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.++|. ...++..+++.+ .|+ .++|+|.+|||||||+|.|.|..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 21 ALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred cccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345555554 334678888888 677 89999999999999999999864
No 454
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.97 E-value=1.3e-05 Score=75.08 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred CccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.+++++....++++|.||||+||||++++|++..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 34567888888877999999999999999999998753
No 455
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=7.7e-06 Score=83.85 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=33.0
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++..
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34588888 777 99999999999999999999999876
No 456
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.94 E-value=9.7e-06 Score=78.17 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++|||||||+|.|.|..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~ 24 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK 24 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999865
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.92 E-value=8.9e-06 Score=73.98 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||+++|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999986
No 458
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.91 E-value=5.1e-06 Score=76.77 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+++++++.. |++++|+||||||||||+++|+|..
T Consensus 13 ~~~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 13 EKRVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCeecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHH
Confidence 345667766665 6999999999999999999999864
No 459
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.91 E-value=2.2e-05 Score=73.26 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=27.4
Q ss_pred cccccccccccCCCcEEEec------CHH-HHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWE-RYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~-~~~~~~~ll~el~~ 309 (391)
|+++++.++ +.+|.++++| |+. ....+..+++.+.+
T Consensus 97 ~~l~~~l~~-~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 97 YQVSKALRL-ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred HHHHHHHHh-CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 688888888 8999999999 543 45555677777754
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.91 E-value=7.1e-06 Score=84.28 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=57.2
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC---cccccc
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED---QRVGEV 212 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g---~~v~~v 212 (391)
+.+...|.++ .+++.++ .+ +|++++|+||||||||||+++|+++. .|+.|.+.+.| .++...
T Consensus 143 ~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~------------~pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 143 ARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD------------AFDTVVIALVGERGREVREF 209 (450)
T ss_pred ecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCeeeeeecccCCccHHHH
Confidence 4566667544 5777775 56 99999999999999999999999998 88889887754 444433
Q ss_pred ccccCCCcceeeeEEEEecc
Q 016339 213 STKSGRGKHTTRHVSLLPLS 232 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~ 232 (391)
.... +.....+.+.++++.
T Consensus 210 ~~~~-l~~~r~rtI~vV~qs 228 (450)
T PRK06002 210 LEDT-LADNLKKAVAVVATS 228 (450)
T ss_pred hHHH-HHHhhCCeEEEEEcC
Confidence 2211 111233567777775
No 461
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.89 E-value=6.3e-05 Score=88.19 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=38.4
Q ss_pred hcCcccccccccccccccC--CCcEEEec------CHHHHHHHHHHHHHHHHHHhh
Q 016339 266 MLKANEPAKCSFNNCLHLG--EPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~--eP~~lllD------D~~~~~~~~~ll~el~~~~~~ 313 (391)
.|||||.||+.+|.-|... .+.++|+| ++.-...++++|++|.....+
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~t 1754 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHS 1754 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCe
Confidence 7999999999999988332 36899999 567788888888888765444
No 462
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.89 E-value=1.7e-05 Score=75.90 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|+|.|..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999999975
No 463
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.4e-05 Score=81.95 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=39.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++.+ +.+ +|+.++|+|+||+|||||+++|++.. +++.|.|.+.|++
T Consensus 145 raID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~------------~~~~gvI~~iGer 193 (432)
T PRK06793 145 KSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA------------KADINVISLVGER 193 (432)
T ss_pred EEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC------------CCCeEEEEeCCCC
Confidence 467764 666 99999999999999999999999998 7777776655544
No 464
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.88 E-value=1.7e-05 Score=80.63 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-++|||.++||||||||+|++..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k 183 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK 183 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc
Confidence 49999999999999999999854
No 465
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.88 E-value=1.4e-05 Score=71.13 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.++||||||+|+|+|..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999986
No 466
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.87 E-value=1.4e-05 Score=73.21 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 58999999999999999999975
No 467
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.86 E-value=1.2e-05 Score=72.80 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=24.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|++++|+|+||||||||+++|+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999987
No 468
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.84 E-value=1.8e-05 Score=82.67 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=52.3
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
..+...++...+++.+++.+ .|+.++|+||||+|||||++.|.|+. +|.+|++.++...+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll------------pp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL------------PDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC------------CCCCCcEEEecchh
Confidence 45666778888999999888 78999999999999999999999999 88999988776554
No 469
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.82 E-value=1.6e-05 Score=81.91 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=43.5
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
..+++++ +.+ +|++++|+|+||+|||||+++|++.. .|+.|.|.+.|++-
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~------------~~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT------------SADLNVIALIGERG 196 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEEecCC
Confidence 4578888 888 99999999999999999999999998 88889888865443
No 470
>PRK08149 ATP synthase SpaL; Validated
Probab=97.82 E-value=1e-05 Score=82.84 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=45.9
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC---CcceecCcccccccc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVGEVST 214 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~---G~I~~~g~~v~~v~~ 214 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++.. .++. |.|...+.++..+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~------------~~dv~v~g~Ig~rg~ev~e~~~ 197 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS------------EADVFVIGLIGERGREVTEFVE 197 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC------------CCCeEEEEEEeeCCccHHHHHH
Confidence 34688898 887 99999999999999999999999987 5554 777777777765443
No 471
>PRK00089 era GTPase Era; Reviewed
Probab=97.81 E-value=2.2e-05 Score=76.26 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++|||||||+|.|.|..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~ 29 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK 29 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 472
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.80 E-value=2.4e-05 Score=67.68 Aligned_cols=20 Identities=60% Similarity=0.757 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 016339 162 TVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~g 181 (391)
++|+|++|||||||+|.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 473
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.80 E-value=3e-05 Score=70.02 Aligned_cols=23 Identities=52% Similarity=0.651 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
-.++|+|++|||||||+|.|.+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46999999999999999999985
No 474
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=1.9e-05 Score=80.76 Aligned_cols=59 Identities=39% Similarity=0.478 Sum_probs=47.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
.|-.++|+|++++|||||||+|+... +..|++.+| |||+..-...+.+|+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57789999999999999999999876 457777777 887765555555554
Q ss_pred --ccCCcccch
Q 016339 237 --LADTPGFNQ 245 (391)
Q Consensus 237 --l~Dtpg~~~ 245 (391)
+.||+|+++
T Consensus 318 v~L~DTAGiRe 328 (531)
T KOG1191|consen 318 VRLSDTAGIRE 328 (531)
T ss_pred EEEEecccccc
Confidence 889999987
No 475
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00019 Score=77.48 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=32.1
Q ss_pred EEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHH
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA 178 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~ 178 (391)
+.+.-.+...|+||+..| -|.+++|-|-||||||||||-
T Consensus 607 L~l~gA~~nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~ 646 (935)
T COG0178 607 LELKGARRNNLKNIDVEIPLGVFTCVTGVSGSGKSTLIND 646 (935)
T ss_pred EEEecccccCcccceeecccccEEEEEecCCCCHHHhHHH
Confidence 344444556799999999 699999999999999999954
No 476
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.75 E-value=4e-05 Score=65.89 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|..++++|++|||||||+|.|.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 5679999999999999999999865
No 477
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.73 E-value=3.1e-05 Score=69.76 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.3
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+++++..+.-.++|+|++|||||||++.|.+..
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~ 43 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR 43 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57777777755667999999999999999998754
No 478
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.73 E-value=4.7e-05 Score=68.43 Aligned_cols=25 Identities=48% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999863
No 479
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.71 E-value=1.8e-05 Score=86.91 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=31.7
Q ss_pred hcCcccccccccccccccCCCcEEEec------CHHHHHHH-HHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYY-FQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~-~~ll~el~~ 309 (391)
.+|+++++...|.+++ .+|.++|+| |+.....+ ..+++.+..
T Consensus 385 tfS~~m~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 385 TFSGHMKNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred HHHHHHHHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6788888888887655 689999999 67666555 567777654
No 480
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.71 E-value=9.8e-05 Score=72.34 Aligned_cols=63 Identities=30% Similarity=0.346 Sum_probs=45.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG--- 235 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~--- 235 (391)
.-++.|.|++++|||||++.|.+-.. . ...+++||+.+..-..+.+.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp--------------------------E----vA~YPFTTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP--------------------------E----VAPYPFTTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC--------------------------c----cCCCCccccceeEeeeecCCceE
Confidence 46899999999999999999998751 1 23455688765554444333
Q ss_pred cccCCcccchHHHHhC
Q 016339 236 YLADTPGFNQPSLLKV 251 (391)
Q Consensus 236 ~l~Dtpg~~~~~l~~~ 251 (391)
.++||||..+..+...
T Consensus 218 QvIDTPGlLDRPl~Er 233 (346)
T COG1084 218 QVIDTPGLLDRPLEER 233 (346)
T ss_pred EEecCCcccCCChHHh
Confidence 3899999887665543
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.70 E-value=2.7e-05 Score=69.86 Aligned_cols=25 Identities=52% Similarity=0.729 Sum_probs=23.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999976
No 482
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.70 E-value=3.6e-05 Score=68.04 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|+||||||||++.|.+..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC
Confidence 3569999999999999999999974
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.68 E-value=1.9e-05 Score=73.03 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=24.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+||||||||||++.|+++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999987
No 484
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.68 E-value=8.9e-06 Score=81.97 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=72.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc-----------eecCccccccccccCCCcce-eee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKSGRGKHT-TRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I-----------~~~g~~v~~v~~~~~~~~~t-tr~ 225 (391)
.|+..++||-||-||||-++.|+|.. +|.-|.- .|-|..+...+.+...+..- .-.
T Consensus 99 pg~vlglvgtngigkstAlkilagk~------------kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~k 166 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQ------------KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIK 166 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCC------------CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCC
Confidence 69999999999999999999999998 4443321 12222222111111000000 000
Q ss_pred EEEEecc---CCCc------ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHHH
Q 016339 226 VSLLPLS---GGGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296 (391)
Q Consensus 226 i~~v~~~---~~~~------l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~ 296 (391)
.+++.+- ..+. ..+........+..+.+..+.++-.+ .||||+-||.+||.+. +...++.++|.+..
T Consensus 167 pQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~---~lsggelqrfaia~~~-vq~advyMFDEpSs 242 (592)
T KOG0063|consen 167 PQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE---QLSGGELQRFAIAMVC-VQKADVYMFDEPSS 242 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhh---hcccchhhhhhhhhhh-hhhcceeEecCCcc
Confidence 0000000 0000 00111111222334445555555445 9999999999999999 99999999997776
Q ss_pred HHHHHHHH
Q 016339 297 YQYYFQLL 304 (391)
Q Consensus 297 ~~~~~~ll 304 (391)
|-.+.+-|
T Consensus 243 YLDVKQRL 250 (592)
T KOG0063|consen 243 YLDVKQRL 250 (592)
T ss_pred cchHHHhh
Confidence 65554433
No 485
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.67 E-value=3.5e-05 Score=70.70 Aligned_cols=23 Identities=52% Similarity=0.739 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|+|+|..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999999987
No 486
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.66 E-value=2.7e-05 Score=73.26 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=29.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I 202 (391)
+..+++|.||||||||||++.|++.. .+..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l------------~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL------------QQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh------------hhccCCc
Confidence 45799999999999999999999998 7777773
No 487
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.66 E-value=2.3e-05 Score=80.44 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=33.7
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++++ +.+ +|++++|+|+||||||||+++|+|..
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 4689999 888 89999999999999999999999987
No 488
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.65 E-value=4.6e-05 Score=75.06 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
+-+++.+ .|+.++|+||+|||||||+++|++.. ++..|.+.++
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~------------~~~~~iv~ie 178 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI------------PKDERIITIE 178 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC------------CccccEEEEc
Confidence 3455666 78999999999999999999999998 6666666553
No 489
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.64 E-value=4.8e-05 Score=66.80 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc----c
Q 016339 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY----L 237 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~----l 237 (391)
++|+|++|||||||+|.|.+.. ..++..++ +|..........++. +
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~--------------------------~~v~~~~~----~t~~~~~~~~~~~~~~~~~l 52 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK--------------------------PKIADYPF----TTLVPNLGVVRVDDGRSFVV 52 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC--------------------------ccccCCCc----cccCCcceEEEcCCCCeEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.||||+
T Consensus 53 ~DtpG~ 58 (170)
T cd01898 53 ADIPGL 58 (170)
T ss_pred EecCcc
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.62 E-value=3.4e-05 Score=69.37 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999876
No 491
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.61 E-value=2.1e-05 Score=71.54 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHh
Q 016339 162 TVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~ 180 (391)
++|.||||+||||+++.+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 492
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.61 E-value=6.2e-05 Score=71.99 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=25.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||+|||||||++.|.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999999999877
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.59 E-value=3.6e-05 Score=75.20 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++||.||||||||||+++|.++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 494
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.59 E-value=0.0001 Score=63.52 Aligned_cols=54 Identities=39% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++++|++|||||||+|.|+|.. +........ +++............ +
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 55 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQK-------------------------ISIVSPKPQ----TTRNRIRGIYTDDDAQIIF 55 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-------------------------eEeccCCCC----ceeceEEEEEEcCCeEEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.|+||.
T Consensus 56 iDtpG~ 61 (168)
T cd04163 56 VDTPGI 61 (168)
T ss_pred EECCCC
No 495
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.59 E-value=4.3e-05 Score=75.78 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=39.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
..+++.+ +.+ +|++++|+|+||+|||||+++|++.. .|+.|.+..-|
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~------------~~~~~vi~~iG 104 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGT------------TADVNVIALIG 104 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCC------------CCCEEEEEEEe
Confidence 4578888 777 89999999999999999999999998 67666655433
No 496
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.59 E-value=6.6e-05 Score=69.87 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|+|++||||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999986
No 497
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.57 E-value=7.4e-05 Score=65.41 Aligned_cols=44 Identities=32% Similarity=0.514 Sum_probs=0.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D 239 (391)
+.+.||||+|||||||+++|.|.. .-.. .|..+.+ ....+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~---------------------------~~~~-------KTq~i~~-----~~~~ID 42 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE---------------------------IRYK-------KTQAIEY-----YDNTID 42 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC---------------------------CCcC-------ccceeEe-----cccEEE
Q ss_pred Ccc
Q 016339 240 TPG 242 (391)
Q Consensus 240 tpg 242 (391)
|||
T Consensus 43 TPG 45 (143)
T PF10662_consen 43 TPG 45 (143)
T ss_pred CCh
No 498
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.57 E-value=5e-05 Score=78.10 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=42.6
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+..+++++ +.+ +|++++|+|+||+|||||+++|++.. .++.|.+.+.|.+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~------------~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT------------QCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCeEEEEEEccC
Confidence 34678888 777 99999999999999999999999998 7777877766644
No 499
>PLN02796 D-glycerate 3-kinase
Probab=97.57 E-value=4.7e-05 Score=75.76 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=31.3
Q ss_pred cchHHHhhcc----cCCE-----EEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL----RDQT-----TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i----~Ge~-----vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+++.+ +|+. ++|+|+||||||||++.|.++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678888886 4655 9999999999999999999988
No 500
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.55 E-value=4.4e-05 Score=65.43 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 016339 162 TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 162 vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++|+|++|||||||+|.|.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999999874
Done!