Query 016339
Match_columns 391
No_of_seqs 490 out of 3440
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t9h_A YLOQ, probable GTPase E 100.0 1.6E-43 5.4E-48 345.1 15.3 259 21-309 33-302 (307)
2 2rcn_A Probable GTPase ENGC; Y 100.0 3.3E-41 1.1E-45 334.7 19.1 255 20-309 66-346 (358)
3 2yv5_A YJEQ protein; hydrolase 100.0 4.1E-37 1.4E-41 299.3 21.3 254 20-306 26-290 (302)
4 1u0l_A Probable GTPase ENGC; p 100.0 7.2E-30 2.5E-34 248.0 18.5 253 21-308 31-296 (301)
5 3rlf_A Maltose/maltodextrin im 99.9 1.6E-26 5.4E-31 230.9 7.6 155 135-312 4-184 (381)
6 3fvq_A Fe(3+) IONS import ATP- 99.9 3.9E-27 1.3E-31 233.7 3.2 158 135-311 5-188 (359)
7 2yyz_A Sugar ABC transporter, 99.9 2.4E-26 8.2E-31 228.4 4.3 153 136-311 5-183 (359)
8 3tui_C Methionine import ATP-b 99.9 3.6E-26 1.2E-30 227.1 5.2 159 135-311 25-213 (366)
9 1z47_A CYSA, putative ABC-tran 99.9 1.2E-25 4E-30 223.0 8.7 153 136-311 16-195 (355)
10 4g1u_C Hemin import ATP-bindin 99.9 6.1E-26 2.1E-30 216.9 6.0 155 136-311 13-197 (266)
11 2pcj_A ABC transporter, lipopr 99.9 1.7E-26 5.9E-31 215.2 1.7 157 136-310 6-189 (224)
12 1v43_A Sugar-binding transport 99.9 1.5E-25 5.2E-30 223.6 8.6 154 135-311 12-191 (372)
13 2it1_A 362AA long hypothetical 99.9 1.3E-25 4.4E-30 223.3 8.1 153 136-311 5-183 (362)
14 3gfo_A Cobalt import ATP-bindi 99.9 9.4E-26 3.2E-30 216.6 6.1 157 135-310 8-192 (275)
15 1g29_1 MALK, maltose transport 99.9 1.9E-25 6.4E-30 223.1 8.0 159 136-311 5-189 (372)
16 1oxx_K GLCV, glucose, ABC tran 99.9 1.5E-25 5E-30 222.4 5.8 158 136-311 5-190 (353)
17 2olj_A Amino acid ABC transpor 99.9 5.2E-26 1.8E-30 217.0 2.2 157 135-310 25-208 (263)
18 3tif_A Uncharacterized ABC tra 99.9 5.9E-26 2E-30 213.1 2.3 157 137-310 4-194 (235)
19 3d31_A Sulfate/molybdate ABC t 99.9 2E-25 6.7E-30 221.0 6.1 150 137-310 4-176 (348)
20 1b0u_A Histidine permease; ABC 99.9 7.5E-26 2.6E-30 215.7 2.7 158 135-310 7-202 (262)
21 1g6h_A High-affinity branched- 99.9 1.1E-25 3.8E-30 213.9 3.6 155 136-310 9-202 (257)
22 1vpl_A ABC transporter, ATP-bi 99.9 6.6E-26 2.3E-30 215.5 1.6 154 135-310 16-195 (256)
23 2ff7_A Alpha-hemolysin translo 99.9 4.6E-25 1.6E-29 208.5 5.6 156 135-308 8-192 (247)
24 2ihy_A ABC transporter, ATP-bi 99.9 4.8E-25 1.6E-29 212.1 5.5 155 135-310 22-210 (279)
25 1sgw_A Putative ABC transporte 99.9 1.6E-25 5.6E-30 207.4 1.8 148 135-310 11-182 (214)
26 1ji0_A ABC transporter; ATP bi 99.9 4.7E-25 1.6E-29 207.6 4.8 154 136-309 8-187 (240)
27 3nh6_A ATP-binding cassette SU 99.9 1.3E-24 4.3E-29 211.7 4.7 157 135-309 54-238 (306)
28 3gd7_A Fusion complex of cysti 99.9 1.8E-24 6.1E-29 217.1 5.6 152 135-308 20-202 (390)
29 2yz2_A Putative ABC transporte 99.9 1.3E-24 4.4E-29 207.6 4.1 150 137-310 5-187 (266)
30 2onk_A Molybdate/tungstate ABC 99.9 1.2E-24 4.1E-29 205.0 2.1 148 137-310 4-175 (240)
31 2ixe_A Antigen peptide transpo 99.9 2.4E-24 8.2E-29 206.4 3.4 154 135-309 17-204 (271)
32 1mv5_A LMRA, multidrug resista 99.9 1.5E-24 5.3E-29 204.3 1.5 154 137-308 4-186 (243)
33 2nq2_C Hypothetical ABC transp 99.9 3.3E-24 1.1E-28 203.4 3.3 158 136-310 6-177 (253)
34 2d2e_A SUFC protein; ABC-ATPas 99.9 1.7E-24 5.8E-29 204.9 0.5 154 136-309 5-191 (250)
35 2zu0_C Probable ATP-dependent 99.9 7.5E-24 2.6E-28 202.4 1.5 158 135-309 21-212 (267)
36 2qi9_C Vitamin B12 import ATP- 99.9 3.7E-23 1.2E-27 195.8 4.8 147 138-310 8-182 (249)
37 2ghi_A Transport protein; mult 99.9 7.2E-23 2.5E-27 194.9 5.4 156 135-309 18-203 (260)
38 2pze_A Cystic fibrosis transme 99.9 4.7E-23 1.6E-27 192.6 2.1 151 136-307 8-177 (229)
39 3b5x_A Lipid A export ATP-bind 99.9 4.9E-22 1.7E-26 209.1 8.5 157 135-309 342-528 (582)
40 2cbz_A Multidrug resistance-as 99.9 6.4E-23 2.2E-27 192.7 1.1 146 135-305 4-171 (237)
41 2pjz_A Hypothetical protein ST 99.8 2.7E-22 9.4E-27 191.3 5.0 148 137-309 4-176 (263)
42 3qf4_B Uncharacterized ABC tra 99.8 2.8E-22 9.5E-27 211.6 4.3 157 135-309 355-539 (598)
43 3b60_A Lipid A export ATP-bind 99.8 5.8E-22 2E-26 208.6 6.2 157 135-309 342-528 (582)
44 4a82_A Cystic fibrosis transme 99.8 4.2E-22 1.4E-26 209.5 3.9 157 135-309 340-525 (578)
45 2yl4_A ATP-binding cassette SU 99.8 7.5E-22 2.6E-26 208.2 5.1 157 135-309 342-531 (595)
46 3qf4_A ABC transporter, ATP-bi 99.8 1.7E-21 5.9E-26 205.2 6.0 156 135-308 342-526 (587)
47 3ozx_A RNAse L inhibitor; ATP 99.8 9.6E-21 3.3E-25 197.5 5.3 153 139-311 274-435 (538)
48 2bbs_A Cystic fibrosis transme 99.8 3E-21 1E-25 186.6 1.4 149 135-307 41-206 (290)
49 4f4c_A Multidrug resistance pr 99.8 3.7E-21 1.3E-25 219.0 2.2 156 135-308 1077-1264(1321)
50 4f4c_A Multidrug resistance pr 99.8 6.8E-21 2.3E-25 216.8 1.2 157 135-309 416-602 (1321)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 1.3E-19 4.3E-24 189.1 7.0 153 138-310 25-207 (538)
52 3g5u_A MCG1178, multidrug resi 99.8 5E-20 1.7E-24 209.2 4.2 156 135-308 388-573 (1284)
53 3bk7_A ABC transporter ATP-bin 99.8 1.7E-19 5.7E-24 190.6 6.8 153 138-310 95-277 (607)
54 3g5u_A MCG1178, multidrug resi 99.8 2E-19 6.7E-24 204.4 4.5 155 136-308 1032-1218(1284)
55 3bk7_A ABC transporter ATP-bin 99.8 1.2E-19 4E-24 191.8 2.3 152 138-310 361-520 (607)
56 1yqt_A RNAse L inhibitor; ATP- 99.8 1.7E-19 5.9E-24 188.1 3.1 152 139-310 292-450 (538)
57 3j16_B RLI1P; ribosome recycli 99.7 1.8E-18 6.1E-23 182.6 2.1 152 140-311 352-517 (608)
58 3j16_B RLI1P; ribosome recycli 99.7 3.2E-18 1.1E-22 180.7 3.1 151 138-310 81-270 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.7 9.2E-18 3.1E-22 175.0 5.8 136 158-309 24-186 (538)
60 2iw3_A Elongation factor 3A; a 99.7 5E-18 1.7E-22 186.3 3.9 57 138-206 675-734 (986)
61 3cnl_A YLQF, putative uncharac 99.7 4.7E-17 1.6E-21 154.9 6.6 142 69-247 14-158 (262)
62 3ux8_A Excinuclease ABC, A sub 99.7 3.7E-17 1.3E-21 174.6 5.6 50 257-310 196-253 (670)
63 1puj_A YLQF, conserved hypothe 99.6 3.3E-16 1.1E-20 150.6 9.7 143 70-246 17-178 (282)
64 2iw3_A Elongation factor 3A; a 99.6 3.8E-16 1.3E-20 171.5 5.5 143 139-306 440-593 (986)
65 3sop_A Neuronal-specific septi 99.5 3.4E-15 1.2E-19 142.6 6.7 105 161-292 4-120 (270)
66 1tq4_A IIGP1, interferon-induc 99.5 2.2E-15 7.4E-20 152.1 0.5 130 147-308 36-213 (413)
67 3b85_A Phosphate starvation-in 99.5 2.3E-15 7.9E-20 138.5 0.5 131 142-306 8-145 (208)
68 2npi_A Protein CLP1; CLP1-PCF1 99.5 2.1E-15 7.3E-20 154.3 0.1 133 152-306 130-286 (460)
69 3ux8_A Excinuclease ABC, A sub 99.5 2.3E-15 7.8E-20 160.7 -0.7 49 258-310 538-595 (670)
70 2v9p_A Replication protein E1; 99.5 6.6E-15 2.3E-19 143.0 1.4 126 135-300 102-232 (305)
71 2pt7_A CAG-ALFA; ATPase, prote 99.5 2.2E-14 7.6E-19 140.7 5.0 111 137-308 151-262 (330)
72 4gp7_A Metallophosphoesterase; 99.4 5.7E-15 1.9E-19 131.0 -1.3 30 152-181 1-31 (171)
73 3ec1_A YQEH GTPase; atnos1, at 99.4 2.3E-13 7.8E-18 135.5 8.9 145 73-246 68-225 (369)
74 4aby_A DNA repair protein RECN 99.4 1.8E-14 6.2E-19 144.3 0.9 41 267-308 296-344 (415)
75 1z6g_A Guanylate kinase; struc 99.4 7.5E-15 2.6E-19 135.5 -2.6 37 147-183 10-47 (218)
76 3h2y_A GTPase family protein; 99.4 3.1E-13 1E-17 134.5 8.7 160 73-260 66-240 (368)
77 3aez_A Pantothenate kinase; tr 99.4 4.4E-15 1.5E-19 144.7 -4.8 109 158-294 89-203 (312)
78 1ye8_A Protein THEP1, hypothet 99.4 5.7E-14 2E-18 125.9 -0.0 113 161-305 2-127 (178)
79 2qnr_A Septin-2, protein NEDD5 99.3 4.6E-13 1.6E-17 129.6 2.4 123 138-294 2-136 (301)
80 1mky_A Probable GTP-binding pr 99.3 5.6E-12 1.9E-16 128.0 10.2 110 70-183 75-204 (439)
81 3b9q_A Chloroplast SRP recepto 99.3 7E-14 2.4E-18 135.6 -4.6 124 150-292 90-228 (302)
82 3pih_A Uvrabc system protein A 99.2 1E-11 3.5E-16 136.1 9.5 44 266-310 805-857 (916)
83 2vf7_A UVRA2, excinuclease ABC 99.2 3E-12 1E-16 139.2 4.2 49 258-310 725-782 (842)
84 1tf7_A KAIC; homohexamer, hexa 99.2 2.9E-12 9.8E-17 133.0 3.7 142 140-310 18-174 (525)
85 2jeo_A Uridine-cytidine kinase 99.2 5.3E-12 1.8E-16 118.0 4.8 42 142-183 7-49 (245)
86 2r6f_A Excinuclease ABC subuni 99.2 1.3E-12 4.5E-17 142.8 0.8 50 257-310 839-897 (972)
87 2ygr_A Uvrabc system protein A 99.2 3.4E-12 1.2E-16 140.0 3.4 57 250-310 849-915 (993)
88 2dpy_A FLII, flagellum-specifi 99.2 6E-13 2.1E-17 135.4 -2.6 152 136-309 133-296 (438)
89 2qag_C Septin-7; cell cycle, c 99.2 5.9E-12 2E-16 127.3 4.3 130 135-294 12-148 (418)
90 2og2_A Putative signal recogni 99.2 4.5E-13 1.5E-17 132.9 -5.0 123 151-292 148-285 (359)
91 2f1r_A Molybdopterin-guanine d 99.2 1.1E-12 3.9E-17 116.9 -2.6 111 160-288 3-124 (171)
92 2i3b_A HCR-ntpase, human cance 99.1 5.4E-12 1.9E-16 114.2 1.0 102 159-293 1-113 (189)
93 2obl_A ESCN; ATPase, hydrolase 99.1 9.6E-12 3.3E-16 122.8 2.1 144 138-309 49-209 (347)
94 2hjg_A GTP-binding protein ENG 99.1 3E-11 1E-15 122.5 5.5 110 68-183 74-199 (436)
95 1rj9_A FTSY, signal recognitio 99.1 2.4E-12 8.3E-17 124.9 -3.3 135 158-309 101-245 (304)
96 2eyu_A Twitching motility prot 99.1 4E-11 1.4E-15 113.8 3.9 52 148-213 15-68 (261)
97 1htw_A HI0065; nucleotide-bind 99.1 1.2E-11 3.9E-16 108.9 -0.2 55 143-210 16-71 (158)
98 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 4.2E-11 1.4E-15 118.9 2.9 43 266-309 279-333 (365)
99 1znw_A Guanylate kinase, GMP k 99.0 7.3E-12 2.5E-16 114.0 -4.9 33 149-183 11-44 (207)
100 1pui_A ENGB, probable GTP-bind 99.0 1.1E-10 3.7E-15 105.0 2.0 45 136-183 5-50 (210)
101 4dcu_A GTP-binding protein ENG 98.9 5.8E-10 2E-14 113.6 6.1 109 69-183 95-219 (456)
102 1e69_A Chromosome segregation 98.9 3.6E-10 1.2E-14 110.0 3.9 42 266-308 219-270 (322)
103 1p9r_A General secretion pathw 98.9 1.2E-10 4.2E-15 117.6 0.4 56 141-209 150-205 (418)
104 2gza_A Type IV secretion syste 98.9 1.5E-09 5E-14 107.6 7.0 60 136-207 137-211 (361)
105 1tf7_A KAIC; homohexamer, hexa 98.9 5.4E-10 1.8E-14 115.9 3.1 115 158-310 280-406 (525)
106 3euj_A Chromosome partition pr 98.8 6.8E-10 2.3E-14 113.9 2.6 60 141-213 11-71 (483)
107 2qag_B Septin-6, protein NEDD5 98.8 4E-09 1.4E-13 106.6 5.2 47 135-183 17-66 (427)
108 2qm8_A GTPase/ATPase; G protei 98.8 9.5E-10 3.2E-14 108.0 0.5 64 135-210 30-94 (337)
109 1zp6_A Hypothetical protein AT 98.7 3.1E-10 1.1E-14 100.9 -3.8 38 158-209 8-45 (191)
110 2x8a_A Nuclear valosin-contain 98.7 2.6E-10 8.8E-15 108.8 -4.8 117 144-289 30-159 (274)
111 3szr_A Interferon-induced GTP- 98.7 1.1E-08 3.7E-13 108.1 6.6 121 161-307 47-180 (608)
112 1udx_A The GTP-binding protein 98.7 1.2E-09 4E-14 110.4 -1.0 114 150-292 147-277 (416)
113 3asz_A Uridine kinase; cytidin 98.7 6.1E-10 2.1E-14 100.8 -2.8 26 158-183 5-30 (211)
114 1lw7_A Transcriptional regulat 98.7 4.3E-10 1.5E-14 111.2 -4.5 43 151-205 159-208 (365)
115 3c8u_A Fructokinase; YP_612366 98.6 2.3E-10 8E-15 104.0 -7.8 26 158-183 21-46 (208)
116 3qkt_A DNA double-strand break 98.6 3.3E-08 1.1E-12 96.8 6.7 43 266-309 248-302 (339)
117 3thx_B DNA mismatch repair pro 98.6 5E-09 1.7E-13 115.0 0.7 116 147-309 660-783 (918)
118 1nij_A Hypothetical protein YJ 98.6 2.2E-09 7.5E-14 104.4 -2.7 48 160-211 5-52 (318)
119 2bbw_A Adenylate kinase 4, AK4 98.6 3.2E-09 1.1E-13 98.8 -1.6 38 158-207 26-66 (246)
120 2ehv_A Hypothetical protein PH 98.6 3.6E-08 1.2E-12 90.7 4.6 35 149-183 18-56 (251)
121 2e87_A Hypothetical protein PH 98.6 1.1E-08 3.7E-13 100.9 1.1 110 71-183 55-191 (357)
122 3jvv_A Twitching mobility prot 98.5 6.9E-08 2.3E-12 95.5 6.2 26 158-183 122-147 (356)
123 1in4_A RUVB, holliday junction 98.5 4.3E-09 1.5E-13 102.8 -2.5 67 135-209 19-93 (334)
124 2o8b_B DNA mismatch repair pro 98.5 1.1E-08 3.9E-13 113.6 0.3 43 140-183 761-812 (1022)
125 1sq5_A Pantothenate kinase; P- 98.5 1E-08 3.5E-13 99.1 -0.3 58 137-208 40-122 (308)
126 1iy2_A ATP-dependent metallopr 98.5 6.1E-09 2.1E-13 98.7 -3.7 38 144-183 59-97 (278)
127 1s96_A Guanylate kinase, GMP k 98.4 5.6E-08 1.9E-12 89.7 2.8 38 158-207 15-54 (219)
128 2yhs_A FTSY, cell division pro 98.4 3.1E-08 1.1E-12 101.7 0.9 46 152-209 285-331 (503)
129 1ixz_A ATP-dependent metallopr 98.4 7.5E-09 2.6E-13 96.5 -4.0 38 144-183 35-73 (254)
130 3k1j_A LON protease, ATP-depen 98.4 2.2E-07 7.4E-12 97.9 6.4 41 143-183 43-84 (604)
131 2oap_1 GSPE-2, type II secreti 98.4 1.2E-07 4.1E-12 98.1 4.2 49 148-208 248-297 (511)
132 1qhl_A Protein (cell division 98.4 1.3E-08 4.5E-13 94.6 -2.7 66 155-232 23-91 (227)
133 1lvg_A Guanylate kinase, GMP k 98.4 8E-08 2.7E-12 86.7 2.5 26 158-183 3-28 (198)
134 3thx_A DNA mismatch repair pro 98.4 7.7E-08 2.6E-12 105.9 2.4 34 148-181 650-684 (934)
135 3a00_A Guanylate kinase, GMP k 98.4 1.2E-07 4.2E-12 84.4 3.2 25 159-183 1-25 (186)
136 3lnc_A Guanylate kinase, GMP k 98.4 1E-07 3.5E-12 87.6 2.2 36 148-183 15-52 (231)
137 1odf_A YGR205W, hypothetical 3 98.4 2.8E-08 9.4E-13 95.6 -1.8 26 158-183 30-55 (290)
138 3uie_A Adenylyl-sulfate kinase 98.3 1E-07 3.4E-12 85.8 1.8 57 140-209 5-64 (200)
139 3nwj_A ATSK2; P loop, shikimat 98.3 1.5E-07 5E-12 88.7 2.9 49 135-183 18-72 (250)
140 3e70_C DPA, signal recognition 98.3 1E-07 3.5E-12 93.2 1.5 42 158-211 128-169 (328)
141 1ewq_A DNA mismatch repair pro 98.3 1E-07 3.6E-12 102.9 1.7 35 147-183 566-600 (765)
142 1pzn_A RAD51, DNA repair and r 98.3 4.4E-07 1.5E-11 89.3 5.5 36 148-183 118-155 (349)
143 4a74_A DNA repair and recombin 98.3 2.8E-07 9.5E-12 83.6 3.7 26 158-183 24-49 (231)
144 3tr0_A Guanylate kinase, GMP k 98.3 2E-07 6.9E-12 83.3 2.7 29 155-183 2-31 (205)
145 1cr0_A DNA primase/helicase; R 98.3 2.3E-07 7.7E-12 88.5 3.0 47 147-205 22-70 (296)
146 1nlf_A Regulatory protein REPA 98.2 8.3E-07 2.8E-11 84.0 4.8 26 158-183 29-54 (279)
147 1kgd_A CASK, peripheral plasma 98.2 5.2E-07 1.8E-11 79.9 3.0 26 158-183 4-29 (180)
148 2kjq_A DNAA-related protein; s 98.2 1.2E-06 4.1E-11 75.7 5.2 26 158-183 35-60 (149)
149 3ec2_A DNA replication protein 98.2 5E-07 1.7E-11 79.5 2.8 26 158-183 37-62 (180)
150 3kta_A Chromosome segregation 98.2 2.3E-06 7.8E-11 75.2 6.7 38 146-183 11-50 (182)
151 1vma_A Cell division protein F 98.2 3.7E-07 1.3E-11 88.4 1.2 89 158-293 103-194 (306)
152 2ewv_A Twitching motility prot 98.1 4.6E-07 1.6E-11 90.0 1.6 47 149-209 127-175 (372)
153 2cvh_A DNA repair and recombin 98.1 4E-06 1.4E-10 75.4 7.5 34 148-181 7-42 (220)
154 1ega_A Protein (GTP-binding pr 98.1 5.4E-07 1.9E-11 86.7 1.6 26 158-183 7-32 (301)
155 1wb9_A DNA mismatch repair pro 98.1 5.5E-07 1.9E-11 97.7 1.2 37 147-183 595-631 (800)
156 4e22_A Cytidylate kinase; P-lo 98.1 6.5E-07 2.2E-11 83.8 1.5 40 158-209 26-76 (252)
157 2w0m_A SSO2452; RECA, SSPF, un 98.1 9.2E-07 3.1E-11 80.0 1.8 48 147-206 9-58 (235)
158 2j41_A Guanylate kinase; GMP, 98.1 1.7E-06 5.7E-11 77.3 3.4 26 158-183 5-30 (207)
159 3ney_A 55 kDa erythrocyte memb 98.0 2.1E-06 7.3E-11 77.9 3.8 26 158-183 18-43 (197)
160 3t34_A Dynamin-related protein 98.0 2.3E-06 8E-11 84.1 4.3 35 147-183 24-58 (360)
161 4eun_A Thermoresistant glucoki 98.0 1.7E-06 5.8E-11 77.7 2.8 26 158-183 28-53 (200)
162 1ko7_A HPR kinase/phosphatase; 98.0 7.9E-07 2.7E-11 86.3 0.4 98 74-182 53-167 (314)
163 1oix_A RAS-related protein RAB 98.0 2.5E-06 8.5E-11 75.8 3.3 23 161-183 31-53 (191)
164 3vaa_A Shikimate kinase, SK; s 98.0 2.6E-06 8.9E-11 76.4 3.2 38 146-183 11-49 (199)
165 3tqc_A Pantothenate kinase; bi 98.0 1.7E-06 5.8E-11 84.3 2.0 44 140-183 66-116 (321)
166 2bdt_A BH3686; alpha-beta prot 98.0 1.7E-06 5.8E-11 76.6 1.7 23 159-181 2-24 (189)
167 1rz3_A Hypothetical protein rb 97.9 2.9E-06 9.9E-11 76.4 1.9 40 158-209 21-60 (201)
168 3tau_A Guanylate kinase, GMP k 97.9 5.4E-06 1.9E-10 75.0 3.4 26 158-183 7-32 (208)
169 1sxj_E Activator 1 40 kDa subu 97.9 1.7E-05 5.9E-10 76.8 6.7 53 145-209 18-75 (354)
170 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 7.5E-06 2.6E-10 81.9 3.9 52 158-209 19-70 (392)
171 1n0w_A DNA repair protein RAD5 97.8 1.1E-05 3.9E-10 73.5 4.5 25 158-182 23-47 (243)
172 2f9l_A RAB11B, member RAS onco 97.8 6.2E-06 2.1E-10 73.3 2.5 23 161-183 7-29 (199)
173 1knq_A Gluconate kinase; ALFA/ 97.8 6.4E-06 2.2E-10 71.8 2.4 26 158-183 7-32 (175)
174 2gj8_A MNME, tRNA modification 97.8 1.5E-05 5.1E-10 69.5 4.6 26 158-183 3-28 (172)
175 2p67_A LAO/AO transport system 97.8 5.7E-06 2E-10 80.9 1.3 43 141-183 37-80 (341)
176 1svm_A Large T antigen; AAA+ f 97.7 1.3E-05 4.5E-10 79.7 3.7 36 148-183 157-193 (377)
177 3pqc_A Probable GTP-binding pr 97.7 3.1E-05 1.1E-09 67.5 5.3 24 160-183 24-47 (195)
178 1ls1_A Signal recognition part 97.7 2.3E-06 7.9E-11 82.2 -2.6 46 151-209 91-136 (295)
179 2vp4_A Deoxynucleoside kinase; 97.7 1.3E-05 4.5E-10 73.6 2.6 25 158-182 19-43 (230)
180 2www_A Methylmalonic aciduria 97.7 9.8E-06 3.4E-10 79.6 1.7 25 159-183 74-98 (349)
181 1kag_A SKI, shikimate kinase I 97.7 1.7E-05 5.8E-10 68.8 2.7 25 159-183 4-28 (173)
182 2qag_A Septin-2, protein NEDD5 97.6 2.9E-06 9.8E-11 83.8 -2.6 44 135-183 18-61 (361)
183 2ius_A DNA translocase FTSK; n 97.6 9.1E-05 3.1E-09 76.4 8.4 29 153-181 160-189 (512)
184 3iev_A GTP-binding protein ERA 97.6 3.2E-05 1.1E-09 74.4 4.8 24 160-183 11-34 (308)
185 1wf3_A GTP-binding protein; GT 97.6 3E-05 1E-09 74.5 4.5 24 160-183 8-31 (301)
186 3cr8_A Sulfate adenylyltranfer 97.6 1E-05 3.4E-10 84.4 1.2 40 158-209 368-409 (552)
187 3t5g_A GTP-binding protein RHE 97.6 1.1E-05 3.9E-10 69.9 1.2 105 69-174 70-180 (181)
188 1zu4_A FTSY; GTPase, signal re 97.6 9.9E-06 3.4E-10 78.8 0.7 47 151-209 96-143 (320)
189 1x3s_A RAS-related protein RAB 97.6 2E-05 7E-10 68.8 2.6 105 69-174 80-194 (195)
190 3lxx_A GTPase IMAP family memb 97.6 3.1E-05 1.1E-09 71.1 4.0 24 160-183 30-53 (239)
191 3m6a_A ATP-dependent protease 97.6 4.7E-06 1.6E-10 86.7 -1.8 49 135-183 84-132 (543)
192 4dhe_A Probable GTP-binding pr 97.6 2.8E-05 9.6E-10 69.9 3.5 25 159-183 29-53 (223)
193 3k53_A Ferrous iron transport 97.6 4.5E-05 1.6E-09 71.7 5.0 23 161-183 5-27 (271)
194 1svi_A GTP-binding protein YSX 97.6 4.5E-05 1.6E-09 66.8 4.5 24 160-183 24-47 (195)
195 2dhr_A FTSH; AAA+ protein, hex 97.6 8.7E-06 3E-10 83.9 -0.4 37 145-183 51-88 (499)
196 3lxw_A GTPase IMAP family memb 97.6 3.9E-05 1.3E-09 71.4 3.8 24 160-183 22-45 (247)
197 2o5v_A DNA replication and rep 97.6 2.1E-05 7.2E-10 77.7 2.1 42 266-308 265-321 (359)
198 2wjg_A FEOB, ferrous iron tran 97.6 6.4E-05 2.2E-09 65.4 4.9 24 160-183 8-31 (188)
199 1ah9_A IF1, initiation factor 97.5 7.1E-05 2.4E-09 56.6 4.3 55 5-60 12-67 (71)
200 2px0_A Flagellar biosynthesis 97.5 2.5E-05 8.5E-10 75.1 2.0 26 158-183 104-129 (296)
201 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 4.7E-05 1.6E-09 65.6 3.3 28 154-181 18-45 (149)
202 3i4o_A Translation initiation 97.5 7.4E-05 2.5E-09 57.6 3.8 56 4-60 20-75 (79)
203 2oqk_A Putative translation in 97.5 4.3E-05 1.5E-09 63.5 2.6 48 19-67 52-99 (117)
204 1f6b_A SAR1; gtpases, N-termin 97.5 5.6E-05 1.9E-09 67.3 3.3 36 148-183 14-49 (198)
205 2qor_A Guanylate kinase; phosp 97.4 5.4E-05 1.9E-09 67.9 3.0 26 158-183 11-36 (204)
206 3iby_A Ferrous iron transport 97.4 9.8E-05 3.3E-09 69.2 4.9 23 161-183 3-25 (256)
207 3i8s_A Ferrous iron transport 97.4 0.00013 4.4E-09 68.9 5.5 23 161-183 5-27 (274)
208 2qt1_A Nicotinamide riboside k 97.4 7.4E-05 2.5E-09 66.9 3.6 26 158-183 20-45 (207)
209 2qtf_A Protein HFLX, GTP-bindi 97.4 6.6E-05 2.3E-09 74.2 3.6 23 161-183 181-203 (364)
210 1hr0_W Translation initiation 97.4 5.9E-05 2E-09 57.1 2.4 55 5-60 13-68 (71)
211 2wji_A Ferrous iron transport 97.4 7.2E-05 2.4E-09 64.3 3.2 23 161-183 5-27 (165)
212 3t5d_A Septin-7; GTP-binding p 97.4 0.00012 4.3E-09 68.8 5.1 23 161-183 10-32 (274)
213 1h65_A Chloroplast outer envel 97.4 0.00011 3.8E-09 69.0 4.5 23 161-183 41-63 (270)
214 1jal_A YCHF protein; nucleotid 97.4 9.9E-05 3.4E-09 73.0 4.2 49 159-208 2-50 (363)
215 3lda_A DNA repair protein RAD5 97.4 0.00013 4.4E-09 73.1 5.0 26 158-183 177-204 (400)
216 2ohf_A Protein OLA1, GTP-bindi 97.4 8.3E-05 2.8E-09 74.3 3.5 52 158-210 21-72 (396)
217 3tkl_A RAS-related protein RAB 97.4 0.0001 3.4E-09 64.5 3.6 104 70-174 82-194 (196)
218 3pih_A Uvrabc system protein A 97.4 1.7E-05 5.8E-10 87.1 -1.7 109 192-310 389-515 (916)
219 1cke_A CK, MSSA, protein (cyti 97.3 8.3E-05 2.8E-09 67.2 3.1 37 159-204 5-41 (227)
220 3b1v_A Ferrous iron uptake tra 97.3 0.00017 5.8E-09 68.3 5.1 23 161-183 5-27 (272)
221 3def_A T7I23.11 protein; chlor 97.3 0.00016 5.3E-09 67.7 4.6 24 160-183 37-60 (262)
222 1m2o_B GTP-binding protein SAR 97.3 9.9E-05 3.4E-09 65.1 3.1 35 149-183 13-47 (190)
223 4a9a_A Ribosome-interacting GT 97.3 0.00011 3.8E-09 72.9 3.7 30 154-183 64-96 (376)
224 4dcu_A GTP-binding protein ENG 97.3 0.00011 3.7E-09 74.5 3.6 24 160-183 24-47 (456)
225 3a1s_A Iron(II) transport prot 97.3 0.00019 6.6E-09 67.2 4.9 23 161-183 7-29 (258)
226 1w1w_A Structural maintenance 97.3 9.6E-05 3.3E-09 74.3 3.0 30 156-185 22-52 (430)
227 1f5n_A Interferon-induced guan 97.3 0.00014 4.7E-09 76.3 4.2 24 160-183 39-62 (592)
228 2vf7_A UVRA2, excinuclease ABC 97.3 9.9E-06 3.4E-10 88.2 -4.6 131 168-310 271-430 (842)
229 2xtp_A GTPase IMAP family memb 97.3 0.00018 6.3E-09 66.7 4.6 24 160-183 23-46 (260)
230 2cxx_A Probable GTP-binding pr 97.3 0.00017 5.8E-09 62.6 4.1 23 161-183 3-25 (190)
231 4bas_A ADP-ribosylation factor 97.3 0.0017 5.9E-08 56.6 10.7 89 68-157 78-183 (199)
232 2dyk_A GTP-binding protein; GT 97.3 0.00016 5.3E-09 61.0 3.5 54 161-243 3-59 (161)
233 2zej_A Dardarin, leucine-rich 97.2 0.00013 4.5E-09 63.8 3.1 23 161-183 4-26 (184)
234 1jjv_A Dephospho-COA kinase; P 97.2 0.00013 4.6E-09 65.1 3.2 22 161-182 4-25 (206)
235 2pez_A Bifunctional 3'-phospho 97.2 0.00014 4.8E-09 63.6 2.9 26 158-183 4-29 (179)
236 3ice_A Transcription terminati 97.2 0.00016 5.5E-09 72.0 3.6 50 134-183 133-198 (422)
237 3qks_A DNA double-strand break 97.2 0.00017 5.7E-09 65.2 3.3 28 154-181 18-45 (203)
238 2hjg_A GTP-binding protein ENG 97.2 0.00016 5.3E-09 72.9 3.3 23 161-183 5-27 (436)
239 4eaq_A DTMP kinase, thymidylat 97.2 0.00017 5.9E-09 66.4 3.2 37 147-183 10-50 (229)
240 1f2t_B RAD50 ABC-ATPase; DNA d 97.2 0.00011 3.7E-09 63.5 1.7 49 257-309 51-111 (148)
241 1m7g_A Adenylylsulfate kinase; 97.2 6.4E-05 2.2E-09 67.8 0.1 26 158-183 24-49 (211)
242 3cph_A RAS-related protein SEC 97.2 0.00054 1.9E-08 60.7 6.2 88 69-157 85-176 (213)
243 1sxj_C Activator 1 40 kDa subu 97.2 0.00016 5.6E-09 70.0 3.0 41 143-183 27-70 (340)
244 1j8m_F SRP54, signal recogniti 97.1 2.3E-05 8E-10 75.3 -3.2 44 153-208 92-135 (297)
245 2if2_A Dephospho-COA kinase; a 97.1 0.00019 6.4E-09 63.9 3.0 21 161-181 3-23 (204)
246 2dy1_A Elongation factor G; tr 97.1 0.0002 6.9E-09 76.2 3.4 26 158-183 8-33 (665)
247 2qu8_A Putative nucleolar GTP- 97.1 0.00036 1.2E-08 63.3 4.6 53 161-243 31-86 (228)
248 3gee_A MNME, tRNA modification 97.1 0.00016 5.6E-09 73.9 2.1 26 158-183 232-257 (476)
249 2g6b_A RAS-related protein RAB 97.0 0.0012 4.1E-08 56.6 7.0 88 69-157 76-168 (180)
250 3c5h_A Glucocorticoid receptor 97.0 0.0018 6.1E-08 60.2 8.7 81 76-156 162-248 (255)
251 2yvu_A Probable adenylyl-sulfa 97.0 0.00018 6.2E-09 63.2 1.7 26 158-183 12-37 (186)
252 1y63_A LMAJ004144AAA protein; 97.0 0.00035 1.2E-08 61.6 3.5 31 152-182 2-33 (184)
253 2h17_A ADP-ribosylation factor 97.0 0.0016 5.6E-08 56.3 7.7 88 68-156 80-176 (181)
254 3kb2_A SPBC2 prophage-derived 97.0 0.00034 1.2E-08 60.0 3.2 23 161-183 3-25 (173)
255 1np6_A Molybdopterin-guanine d 97.0 0.00031 1.1E-08 62.2 3.0 24 160-183 7-30 (174)
256 1mky_A Probable GTP-binding pr 97.0 0.00027 9.1E-09 71.3 2.8 23 161-183 3-25 (439)
257 3t61_A Gluconokinase; PSI-biol 97.0 0.00028 9.7E-09 62.8 2.7 25 159-183 18-42 (202)
258 1ex7_A Guanylate kinase; subst 97.0 0.00031 1.1E-08 62.9 2.9 23 161-183 3-25 (186)
259 2ffh_A Protein (FFH); SRP54, s 97.0 0.00018 6.3E-09 72.5 1.4 46 151-209 91-136 (425)
260 3q72_A GTP-binding protein RAD 97.0 0.00039 1.3E-08 58.9 3.2 23 161-183 4-26 (166)
261 1qhx_A CPT, protein (chloramph 96.9 0.00041 1.4E-08 60.1 3.4 25 159-183 3-27 (178)
262 3cm0_A Adenylate kinase; ATP-b 96.9 0.00032 1.1E-08 61.3 2.7 24 158-181 3-26 (186)
263 1kht_A Adenylate kinase; phosp 96.9 0.00045 1.6E-08 60.2 3.3 25 159-183 3-27 (192)
264 2nzj_A GTP-binding protein REM 96.9 0.00045 1.5E-08 58.9 3.2 23 161-183 6-28 (175)
265 2h57_A ADP-ribosylation factor 96.9 0.0017 5.8E-08 56.6 7.0 89 68-157 82-181 (190)
266 2gf9_A RAS-related protein RAB 96.9 0.0011 3.7E-08 57.8 5.7 89 68-157 86-179 (189)
267 3cpj_B GTP-binding protein YPT 96.9 0.0024 8.3E-08 57.4 8.0 23 161-183 15-37 (223)
268 2efe_B Small GTP-binding prote 96.9 0.0014 4.8E-08 56.2 6.1 88 69-157 77-169 (181)
269 1kao_A RAP2A; GTP-binding prot 96.9 0.00045 1.5E-08 58.1 2.9 23 161-183 5-27 (167)
270 1z08_A RAS-related protein RAB 96.9 0.0018 6.3E-08 54.7 6.8 86 70-156 72-162 (170)
271 2dr3_A UPF0273 protein PH0284; 96.9 0.00071 2.4E-08 61.4 4.3 34 148-181 10-45 (247)
272 2erx_A GTP-binding protein DI- 96.9 0.00052 1.8E-08 58.1 3.2 23 161-183 5-27 (172)
273 1zj6_A ADP-ribosylation factor 96.9 0.0021 7.2E-08 55.8 7.2 88 69-157 76-172 (187)
274 1z2a_A RAS-related protein RAB 96.9 0.00047 1.6E-08 58.3 2.9 23 161-183 7-29 (168)
275 2ce2_X GTPase HRAS; signaling 96.8 0.00051 1.8E-08 57.5 3.0 23 161-183 5-27 (166)
276 3q85_A GTP-binding protein REM 96.8 0.00055 1.9E-08 58.1 3.2 23 161-183 4-26 (169)
277 2ged_A SR-beta, signal recogni 96.8 0.00048 1.7E-08 60.1 2.9 24 160-183 49-72 (193)
278 1g16_A RAS-related protein SEC 96.8 0.00054 1.8E-08 58.0 3.0 23 161-183 5-27 (170)
279 3lw7_A Adenylate kinase relate 96.8 0.00054 1.8E-08 58.4 3.0 20 160-179 2-21 (179)
280 2fu5_C RAS-related protein RAB 96.8 0.0012 3.9E-08 57.0 5.0 88 69-157 73-165 (183)
281 3tw8_B RAS-related protein RAB 96.8 0.00057 1.9E-08 58.5 3.0 23 161-183 11-33 (181)
282 1u8z_A RAS-related protein RAL 96.8 0.00057 2E-08 57.5 2.9 23 161-183 6-28 (168)
283 2nzj_A GTP-binding protein REM 96.8 0.0023 7.9E-08 54.3 6.8 86 71-157 72-163 (175)
284 2y8e_A RAB-protein 6, GH09086P 96.8 0.00096 3.3E-08 56.9 4.3 88 69-157 79-171 (179)
285 1upt_A ARL1, ADP-ribosylation 96.8 0.0044 1.5E-07 52.4 8.5 88 68-156 66-162 (171)
286 2iwr_A Centaurin gamma 1; ANK 96.8 0.00053 1.8E-08 58.9 2.6 23 161-183 9-31 (178)
287 1z0j_A RAB-22, RAS-related pro 96.8 0.00059 2E-08 57.8 2.9 23 161-183 8-30 (170)
288 1fzq_A ADP-ribosylation factor 96.8 0.00064 2.2E-08 59.2 3.2 24 160-183 17-40 (181)
289 2fh5_B SR-beta, signal recogni 96.8 0.0012 4.1E-08 58.8 5.0 24 160-183 8-31 (214)
290 3ihw_A Centg3; RAS, centaurin, 96.8 0.00092 3.1E-08 58.5 4.2 42 161-209 22-67 (184)
291 3t1o_A Gliding protein MGLA; G 96.8 0.0008 2.7E-08 58.4 3.8 89 69-157 90-186 (198)
292 1ek0_A Protein (GTP-binding pr 96.8 0.0006 2E-08 57.6 2.9 23 161-183 5-27 (170)
293 2rhm_A Putative kinase; P-loop 96.8 0.00068 2.3E-08 59.3 3.3 26 158-183 4-29 (193)
294 1c1y_A RAS-related protein RAP 96.8 0.0006 2.1E-08 57.5 2.9 23 161-183 5-27 (167)
295 1z08_A RAS-related protein RAB 96.8 0.0006 2.1E-08 57.8 2.9 23 161-183 8-30 (170)
296 2fn4_A P23, RAS-related protei 96.8 0.00063 2.2E-08 58.2 3.0 23 161-183 11-33 (181)
297 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00061 2.1E-08 58.3 2.9 21 161-181 9-29 (177)
298 3geh_A MNME, tRNA modification 96.8 0.00018 6E-09 73.4 -0.8 26 158-183 223-248 (462)
299 1z0f_A RAB14, member RAS oncog 96.7 0.00097 3.3E-08 56.9 4.1 86 70-156 81-171 (179)
300 3q72_A GTP-binding protein RAD 96.7 0.0026 9E-08 53.6 6.8 87 69-156 65-157 (166)
301 2lkc_A Translation initiation 96.7 0.0008 2.7E-08 57.6 3.5 26 158-183 7-32 (178)
302 1moz_A ARL1, ADP-ribosylation 96.7 0.00059 2E-08 58.8 2.6 25 159-183 18-42 (183)
303 2v54_A DTMP kinase, thymidylat 96.7 0.00078 2.7E-08 59.6 3.5 26 158-183 3-28 (204)
304 3clv_A RAB5 protein, putative; 96.7 0.00065 2.2E-08 59.0 2.9 23 161-183 9-31 (208)
305 3bc1_A RAS-related protein RAB 96.7 0.0013 4.4E-08 56.8 4.8 87 69-156 86-178 (195)
306 1ky3_A GTP-binding protein YPT 96.7 0.00066 2.3E-08 58.1 2.9 23 161-183 10-32 (182)
307 2j0v_A RAC-like GTP-binding pr 96.7 0.0018 6.3E-08 57.4 5.8 89 67-156 71-173 (212)
308 2fg5_A RAB-22B, RAS-related pr 96.7 0.0017 5.7E-08 56.9 5.4 88 69-157 88-180 (192)
309 2atx_A Small GTP binding prote 96.7 0.0017 5.7E-08 56.8 5.4 91 65-156 78-186 (194)
310 1r2q_A RAS-related protein RAB 96.7 0.0007 2.4E-08 57.1 2.9 23 161-183 8-30 (170)
311 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00072 2.5E-08 66.6 3.3 36 148-183 10-48 (359)
312 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00069 2.4E-08 58.5 2.9 23 161-183 6-28 (189)
313 1gtv_A TMK, thymidylate kinase 96.7 0.00041 1.4E-08 61.9 1.4 23 161-183 2-24 (214)
314 1ksh_A ARF-like protein 2; sma 96.7 0.0019 6.5E-08 55.9 5.6 88 69-157 78-174 (186)
315 1zbd_A Rabphilin-3A; G protein 96.7 0.0019 6.5E-08 56.8 5.7 88 69-157 73-165 (203)
316 3tw8_B RAS-related protein RAB 96.7 0.0023 7.9E-08 54.6 6.1 88 68-156 73-164 (181)
317 2y8e_A RAB-protein 6, GH09086P 96.7 0.00079 2.7E-08 57.5 3.0 23 161-183 16-38 (179)
318 1sky_E F1-ATPase, F1-ATP synth 96.7 0.00033 1.1E-08 71.3 0.7 36 148-183 140-175 (473)
319 3bc1_A RAS-related protein RAB 96.7 0.00075 2.6E-08 58.3 2.9 23 161-183 13-35 (195)
320 2gco_A H9, RHO-related GTP-bin 96.7 0.0015 5.3E-08 57.7 5.0 88 68-156 88-193 (201)
321 2jaq_A Deoxyguanosine kinase; 96.7 0.0008 2.8E-08 59.3 3.1 23 161-183 2-24 (205)
322 1z2a_A RAS-related protein RAB 96.7 0.0013 4.4E-08 55.5 4.3 87 69-156 70-160 (168)
323 1upt_A ARL1, ADP-ribosylation 96.7 0.00077 2.6E-08 57.2 2.9 24 160-183 8-31 (171)
324 1r8s_A ADP-ribosylation factor 96.7 0.00078 2.7E-08 56.8 2.9 23 161-183 2-24 (164)
325 2hxs_A RAB-26, RAS-related pro 96.7 0.00085 2.9E-08 57.4 3.2 23 161-183 8-30 (178)
326 2oil_A CATX-8, RAS-related pro 96.7 0.00077 2.6E-08 58.9 2.8 23 161-183 27-49 (193)
327 3sjy_A Translation initiation 96.7 0.0059 2E-07 60.7 9.6 81 73-154 95-183 (403)
328 1ly1_A Polynucleotide kinase; 96.7 0.00087 3E-08 57.8 3.1 22 160-181 3-24 (181)
329 2plr_A DTMP kinase, probable t 96.6 0.0009 3.1E-08 59.3 3.2 26 158-183 3-28 (213)
330 2wwf_A Thymidilate kinase, put 96.6 0.001 3.6E-08 59.1 3.6 26 158-183 9-34 (212)
331 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.5E-08 58.1 3.4 25 159-183 5-29 (185)
332 3iij_A Coilin-interacting nucl 96.6 0.00091 3.1E-08 58.3 3.0 25 158-182 10-34 (180)
333 3oes_A GTPase rhebl1; small GT 96.6 0.00075 2.5E-08 59.7 2.5 89 68-157 87-181 (201)
334 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0037 1.3E-07 55.1 7.1 89 68-157 72-165 (206)
335 1r2q_A RAS-related protein RAB 96.6 0.0012 4.2E-08 55.6 3.8 88 69-157 71-163 (170)
336 1g16_A RAS-related protein SEC 96.6 0.0019 6.4E-08 54.5 4.9 87 69-156 68-158 (170)
337 2g6b_A RAS-related protein RAB 96.6 0.00088 3E-08 57.4 2.9 23 161-183 12-34 (180)
338 2a5j_A RAS-related protein RAB 96.6 0.0018 6.2E-08 56.5 4.9 88 69-157 86-178 (191)
339 2cjw_A GTP-binding protein GEM 96.6 0.00087 3E-08 59.2 2.9 22 161-182 8-29 (192)
340 3cbq_A GTP-binding protein REM 96.6 0.00083 2.8E-08 59.5 2.7 23 161-183 25-47 (195)
341 1r8s_A ADP-ribosylation factor 96.6 0.0025 8.4E-08 53.7 5.6 87 70-157 61-156 (164)
342 1moz_A ARL1, ADP-ribosylation 96.6 0.0039 1.3E-07 53.5 7.0 87 69-156 78-173 (183)
343 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.9E-08 58.0 3.5 26 158-183 8-33 (196)
344 1nks_A Adenylate kinase; therm 96.6 0.001 3.6E-08 57.9 3.2 23 161-183 3-25 (194)
345 4ad8_A DNA repair protein RECN 96.6 0.00035 1.2E-08 71.9 0.2 40 141-180 42-81 (517)
346 2ce2_X GTPase HRAS; signaling 96.6 0.0025 8.6E-08 53.2 5.5 87 70-157 68-159 (166)
347 1z0f_A RAB14, member RAS oncog 96.6 0.00096 3.3E-08 56.9 2.9 23 161-183 17-39 (179)
348 3kkq_A RAS-related protein M-R 96.6 0.0032 1.1E-07 54.2 6.3 87 69-156 82-175 (183)
349 1xzp_A Probable tRNA modificat 96.6 0.00023 7.8E-09 73.0 -1.4 58 158-244 242-302 (482)
350 3con_A GTPase NRAS; structural 96.6 0.00097 3.3E-08 58.0 2.9 23 161-183 23-45 (190)
351 2x77_A ADP-ribosylation factor 96.6 0.0042 1.5E-07 53.8 7.1 87 69-156 82-177 (189)
352 2bme_A RAB4A, RAS-related prot 96.6 0.001 3.5E-08 57.4 3.0 23 161-183 12-34 (186)
353 1nn5_A Similar to deoxythymidy 96.6 0.0012 4.2E-08 58.7 3.6 25 158-182 8-32 (215)
354 1jwy_B Dynamin A GTPase domain 96.6 0.001 3.5E-08 63.2 3.3 24 160-183 25-48 (315)
355 2yc2_C IFT27, small RAB-relate 96.6 0.002 6.9E-08 56.5 5.0 86 70-156 90-185 (208)
356 2qpt_A EH domain-containing pr 96.6 0.0016 5.5E-08 67.7 4.9 24 160-183 66-89 (550)
357 2a9k_A RAS-related protein RAL 96.6 0.0012 4.3E-08 56.6 3.5 87 70-157 83-175 (187)
358 2efe_B Small GTP-binding prote 96.6 0.00099 3.4E-08 57.1 2.9 23 161-183 14-36 (181)
359 2a9k_A RAS-related protein RAL 96.6 0.001 3.4E-08 57.2 2.9 24 160-183 19-42 (187)
360 3bwd_D RAC-like GTP-binding pr 96.6 0.0016 5.4E-08 55.9 4.1 90 66-156 69-174 (182)
361 1ksh_A ARF-like protein 2; sma 96.6 0.0011 3.8E-08 57.4 3.2 24 160-183 19-42 (186)
362 2gf0_A GTP-binding protein DI- 96.6 0.0011 3.6E-08 58.0 3.0 23 161-183 10-32 (199)
363 1q3t_A Cytidylate kinase; nucl 96.6 0.0011 3.8E-08 60.7 3.2 25 158-182 15-39 (236)
364 1z0j_A RAB-22, RAS-related pro 96.6 0.003 1E-07 53.3 5.8 90 67-157 69-163 (170)
365 3con_A GTPase NRAS; structural 96.6 0.0037 1.3E-07 54.2 6.5 87 70-157 86-177 (190)
366 1c1y_A RAS-related protein RAP 96.5 0.0024 8.1E-08 53.7 5.1 87 70-157 68-161 (167)
367 1vht_A Dephospho-COA kinase; s 96.5 0.0012 4E-08 59.5 3.2 23 159-181 4-26 (218)
368 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0012 4E-08 57.5 3.0 23 161-183 9-31 (184)
369 2gf9_A RAS-related protein RAB 96.5 0.0011 3.8E-08 57.8 2.9 23 161-183 24-46 (189)
370 2bov_A RAla, RAS-related prote 96.5 0.0011 3.7E-08 58.2 2.9 23 161-183 16-38 (206)
371 2h57_A ADP-ribosylation factor 96.5 0.0011 3.8E-08 57.8 2.9 24 160-183 22-45 (190)
372 2aka_B Dynamin-1; fusion prote 96.5 0.0012 4.1E-08 62.1 3.3 25 159-183 26-50 (299)
373 2oil_A CATX-8, RAS-related pro 96.5 0.0022 7.6E-08 55.9 4.8 88 68-156 89-181 (193)
374 2fg5_A RAB-22B, RAS-related pr 96.5 0.0012 4E-08 57.9 3.0 23 161-183 25-47 (192)
375 1zd9_A ADP-ribosylation factor 96.5 0.0036 1.2E-07 54.5 6.2 86 70-156 84-178 (188)
376 3t5g_A GTP-binding protein RHE 96.5 0.0012 4.1E-08 56.8 3.0 22 161-182 8-29 (181)
377 3oes_A GTPase rhebl1; small GT 96.5 0.0012 4.1E-08 58.3 3.0 24 160-183 25-48 (201)
378 1vg8_A RAS-related protein RAB 96.5 0.0011 3.9E-08 58.2 2.9 23 161-183 10-32 (207)
379 3tkl_A RAS-related protein RAB 96.5 0.0012 4E-08 57.6 2.9 23 161-183 18-40 (196)
380 2bov_A RAla, RAS-related prote 96.5 0.0032 1.1E-07 55.2 5.8 87 70-157 79-171 (206)
381 3kkq_A RAS-related protein M-R 96.5 0.0012 4E-08 57.0 2.9 23 161-183 20-42 (183)
382 1u8z_A RAS-related protein RAL 96.5 0.0019 6.7E-08 54.1 4.2 86 70-156 69-160 (168)
383 2h17_A ADP-ribosylation factor 96.5 0.0013 4.4E-08 57.0 3.1 24 160-183 22-45 (181)
384 1gvn_B Zeta; postsegregational 96.5 0.0011 3.8E-08 63.1 2.9 26 158-183 32-57 (287)
385 3dz8_A RAS-related protein RAB 96.5 0.0013 4.3E-08 57.6 3.0 23 161-183 25-47 (191)
386 3clv_A RAB5 protein, putative; 96.5 0.0047 1.6E-07 53.4 6.7 87 70-157 110-198 (208)
387 4djt_A GTP-binding nuclear pro 96.5 0.0042 1.4E-07 55.3 6.5 88 68-156 76-168 (218)
388 1zbd_A Rabphilin-3A; G protein 96.5 0.0013 4.6E-08 57.8 3.2 23 161-183 10-32 (203)
389 3t1o_A Gliding protein MGLA; G 96.5 0.0012 4.2E-08 57.2 2.9 23 161-183 16-38 (198)
390 1zj6_A ADP-ribosylation factor 96.5 0.0014 4.9E-08 56.9 3.3 25 159-183 16-40 (187)
391 4bas_A ADP-ribosylation factor 96.5 0.0013 4.5E-08 57.4 3.1 24 160-183 18-41 (199)
392 2q3h_A RAS homolog gene family 96.5 0.0068 2.3E-07 53.1 7.7 91 65-156 80-188 (201)
393 1z06_A RAS-related protein RAB 96.5 0.0012 4.3E-08 57.4 2.9 21 161-181 22-42 (189)
394 2il1_A RAB12; G-protein, GDP, 96.5 0.0013 4.5E-08 57.7 3.0 23 161-183 28-50 (192)
395 1nrj_B SR-beta, signal recogni 96.5 0.0012 4.2E-08 58.8 2.9 24 160-183 13-36 (218)
396 3r7w_A Gtpase1, GTP-binding pr 96.5 0.0022 7.4E-08 61.4 4.8 24 160-183 4-27 (307)
397 2b6h_A ADP-ribosylation factor 96.5 0.003 1E-07 55.4 5.4 86 70-156 90-184 (192)
398 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0013 4.4E-08 56.6 2.9 23 161-183 7-29 (186)
399 1via_A Shikimate kinase; struc 96.4 0.0013 4.3E-08 57.1 2.8 23 161-183 6-28 (175)
400 2o52_A RAS-related protein RAB 96.4 0.0015 5.2E-08 57.7 3.3 23 161-183 27-49 (200)
401 3q85_A GTP-binding protein REM 96.4 0.0032 1.1E-07 53.3 5.2 84 72-156 71-160 (169)
402 4dhe_A Probable GTP-binding pr 96.4 0.012 4E-07 52.4 9.2 82 74-157 113-205 (223)
403 2bcg_Y Protein YP2, GTP-bindin 96.4 0.0014 4.7E-08 57.9 3.0 23 161-183 10-32 (206)
404 1tev_A UMP-CMP kinase; ploop, 96.4 0.0014 4.9E-08 57.1 3.1 24 159-182 3-26 (196)
405 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0032 1.1E-07 54.0 5.2 88 68-156 68-173 (186)
406 2ze6_A Isopentenyl transferase 96.4 0.0013 4.3E-08 61.3 2.7 23 161-183 3-25 (253)
407 1ky3_A GTP-binding protein YPT 96.4 0.0069 2.4E-07 51.6 7.2 84 70-156 75-171 (182)
408 2ygr_A Uvrabc system protein A 96.4 0.0015 5E-08 72.1 3.5 56 251-310 508-572 (993)
409 1x3s_A RAS-related protein RAB 96.4 0.0015 5E-08 56.8 2.9 24 160-183 16-39 (195)
410 3auy_A DNA double-strand break 96.4 0.0012 4.2E-08 64.9 2.6 30 151-180 17-46 (371)
411 3kta_B Chromosome segregation 96.4 0.0012 4.2E-08 58.3 2.3 44 266-310 64-117 (173)
412 3cph_A RAS-related protein SEC 96.4 0.0014 4.9E-08 57.8 2.9 24 160-183 21-44 (213)
413 2a5j_A RAS-related protein RAB 96.4 0.0014 4.9E-08 57.2 2.8 23 161-183 23-45 (191)
414 3reg_A RHO-like small GTPase; 96.4 0.0025 8.5E-08 55.7 4.4 90 67-157 85-182 (194)
415 1zd9_A ADP-ribosylation factor 96.4 0.0015 5E-08 57.1 2.9 24 160-183 23-46 (188)
416 1uf9_A TT1252 protein; P-loop, 96.4 0.0017 5.9E-08 57.2 3.3 24 159-182 8-31 (203)
417 3r20_A Cytidylate kinase; stru 96.4 0.0015 5.3E-08 60.5 3.1 24 159-182 9-32 (233)
418 3bwd_D RAC-like GTP-binding pr 96.4 0.0015 5.2E-08 56.0 2.9 24 160-183 9-32 (182)
419 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.3E-08 56.8 3.4 26 158-183 11-36 (199)
420 2hxs_A RAB-26, RAS-related pro 96.4 0.0029 1E-07 53.9 4.7 88 69-157 72-167 (178)
421 3cpj_B GTP-binding protein YPT 96.4 0.0021 7.2E-08 57.8 3.9 89 68-157 77-170 (223)
422 2z0h_A DTMP kinase, thymidylat 96.4 0.0016 5.6E-08 57.0 3.1 23 161-183 2-24 (197)
423 2ew1_A RAS-related protein RAB 96.4 0.0016 5.4E-08 58.1 3.0 21 161-181 28-48 (201)
424 3reg_A RHO-like small GTPase; 96.4 0.0015 5.2E-08 57.1 2.9 24 160-183 24-47 (194)
425 2dby_A GTP-binding protein; GD 96.4 0.0013 4.4E-08 65.1 2.6 23 161-183 3-25 (368)
426 1xjc_A MOBB protein homolog; s 96.4 0.0016 5.6E-08 57.3 3.0 24 160-183 5-28 (169)
427 2wsm_A Hydrogenase expression/ 96.3 0.0016 5.6E-08 58.2 3.0 23 160-182 31-53 (221)
428 2p5s_A RAS and EF-hand domain 96.3 0.0016 5.4E-08 57.4 2.8 24 160-183 29-52 (199)
429 2fv8_A H6, RHO-related GTP-bin 96.3 0.0017 5.7E-08 57.7 3.0 24 160-183 26-49 (207)
430 2atv_A RERG, RAS-like estrogen 96.3 0.0016 5.5E-08 57.1 2.9 24 160-183 29-52 (196)
431 2p5t_B PEZT; postsegregational 96.3 0.001 3.6E-08 61.7 1.6 26 158-183 31-56 (253)
432 4djt_A GTP-binding nuclear pro 96.3 0.0011 3.9E-08 59.1 1.8 23 161-183 13-35 (218)
433 2f7s_A C25KG, RAS-related prot 96.3 0.0027 9.3E-08 56.5 4.3 86 71-157 102-193 (217)
434 1zd8_A GTP:AMP phosphotransfer 96.3 0.002 6.9E-08 58.4 3.5 26 158-183 6-31 (227)
435 2j1l_A RHO-related GTP-binding 96.3 0.0019 6.7E-08 57.7 3.3 21 161-181 36-56 (214)
436 2b6h_A ADP-ribosylation factor 96.3 0.0019 6.5E-08 56.8 3.2 26 158-183 28-53 (192)
437 1ek0_A Protein (GTP-binding pr 96.3 0.0026 8.8E-08 53.6 3.9 88 69-157 68-163 (170)
438 2f7s_A C25KG, RAS-related prot 96.3 0.0019 6.4E-08 57.6 3.1 23 161-183 27-49 (217)
439 3c5c_A RAS-like protein 12; GD 96.3 0.0017 6E-08 56.7 2.9 23 161-183 23-45 (187)
440 3dz8_A RAS-related protein RAB 96.3 0.0041 1.4E-07 54.2 5.3 86 71-157 90-180 (191)
441 2g3y_A GTP-binding protein GEM 96.3 0.0019 6.6E-08 58.4 3.2 21 161-181 39-59 (211)
442 2fu5_C RAS-related protein RAB 96.3 0.0012 4.2E-08 56.9 1.8 23 161-183 10-32 (183)
443 3hr8_A Protein RECA; alpha and 96.3 0.0012 4.1E-08 65.0 1.8 26 158-183 60-85 (356)
444 2iwr_A Centaurin gamma 1; ANK 96.3 0.0079 2.7E-07 51.4 6.9 80 73-156 69-162 (178)
445 1gwn_A RHO-related GTP-binding 96.3 0.0019 6.4E-08 57.7 3.0 23 161-183 30-52 (205)
446 2lkc_A Translation initiation 96.3 0.011 3.8E-07 50.2 7.9 84 70-155 72-163 (178)
447 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.7E-08 58.2 3.1 25 159-183 5-29 (222)
448 2vli_A Antibiotic resistance p 96.3 0.0016 5.3E-08 56.5 2.4 26 158-183 4-29 (183)
449 2q3h_A RAS homolog gene family 96.3 0.0021 7.1E-08 56.5 3.2 24 160-183 21-44 (201)
450 2hup_A RAS-related protein RAB 96.3 0.0031 1.1E-07 55.8 4.4 87 70-157 95-187 (201)
451 2o52_A RAS-related protein RAB 96.3 0.0026 8.7E-08 56.2 3.8 88 69-157 90-182 (200)
452 1jbk_A CLPB protein; beta barr 96.3 0.0026 8.9E-08 54.5 3.7 39 145-183 26-67 (195)
453 2x77_A ADP-ribosylation factor 96.3 0.0018 6.1E-08 56.3 2.6 24 160-183 23-46 (189)
454 2e87_A Hypothetical protein PH 96.2 0.018 6.2E-07 56.1 10.1 83 75-157 245-330 (357)
455 3llu_A RAS-related GTP-binding 96.2 0.0023 7.9E-08 56.3 3.3 21 161-181 22-42 (196)
456 3gj0_A GTP-binding nuclear pro 96.2 0.0012 4.2E-08 59.1 1.6 85 69-154 80-166 (221)
457 3fb4_A Adenylate kinase; psych 96.2 0.0021 7.2E-08 57.5 3.1 22 161-182 2-23 (216)
458 4gzl_A RAS-related C3 botulinu 96.2 0.0032 1.1E-07 55.9 4.2 89 66-155 91-197 (204)
459 1njg_A DNA polymerase III subu 96.2 0.0023 8E-08 56.8 3.3 39 145-183 27-69 (250)
460 1aky_A Adenylate kinase; ATP:A 96.2 0.0025 8.4E-08 57.5 3.5 26 158-183 3-28 (220)
461 2gco_A H9, RHO-related GTP-bin 96.2 0.0021 7.3E-08 56.7 3.0 23 161-183 27-49 (201)
462 1kao_A RAP2A; GTP-binding prot 96.2 0.0034 1.2E-07 52.5 4.1 85 71-156 69-159 (167)
463 2cdn_A Adenylate kinase; phosp 96.2 0.0026 9E-08 56.4 3.5 26 158-183 19-44 (201)
464 2fn4_A P23, RAS-related protei 96.2 0.0025 8.7E-08 54.3 3.2 88 69-157 73-166 (181)
465 2atx_A Small GTP binding prote 96.2 0.0023 8E-08 55.8 3.0 23 161-183 20-42 (194)
466 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0061 2.1E-07 52.3 5.6 87 69-156 68-159 (189)
467 2fv8_A H6, RHO-related GTP-bin 96.2 0.0037 1.3E-07 55.4 4.3 87 68-155 88-192 (207)
468 1vg8_A RAS-related protein RAB 96.2 0.0063 2.2E-07 53.4 5.8 89 68-157 72-169 (207)
469 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.4E-08 57.1 3.1 23 161-183 2-24 (216)
470 1qf9_A UMP/CMP kinase, protein 96.2 0.0026 9.1E-08 55.2 3.2 23 160-182 7-29 (194)
471 2pbr_A DTMP kinase, thymidylat 96.1 0.0026 8.8E-08 55.5 3.1 22 161-182 2-23 (195)
472 1e6c_A Shikimate kinase; phosp 96.1 0.0023 8E-08 54.9 2.7 24 160-183 3-26 (173)
473 1lv7_A FTSH; alpha/beta domain 96.1 0.0021 7.2E-08 59.3 2.6 23 161-183 47-69 (257)
474 1m2o_B GTP-binding protein SAR 96.1 0.011 3.9E-07 51.6 7.3 87 69-156 83-185 (190)
475 3c5c_A RAS-like protein 12; GD 96.1 0.004 1.4E-07 54.4 4.2 84 72-156 87-179 (187)
476 2bme_A RAB4A, RAS-related prot 96.1 0.003 1E-07 54.4 3.4 87 70-157 76-167 (186)
477 2erx_A GTP-binding protein DI- 96.1 0.0028 9.7E-08 53.4 3.2 88 69-157 67-161 (172)
478 3kl4_A SRP54, signal recogniti 96.1 0.0012 4.2E-08 66.6 1.0 26 158-183 96-121 (433)
479 2p5s_A RAS and EF-hand domain 96.1 0.0053 1.8E-07 54.0 5.0 86 71-157 95-191 (199)
480 4fcw_A Chaperone protein CLPB; 96.1 0.0018 6E-08 61.2 2.0 39 145-183 21-71 (311)
481 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0018 6E-08 64.0 2.0 26 158-183 34-59 (392)
482 3iev_A GTP-binding protein ERA 96.1 0.0079 2.7E-07 57.6 6.6 80 72-152 88-171 (308)
483 2gf0_A GTP-binding protein DI- 96.1 0.0047 1.6E-07 53.7 4.6 86 70-156 73-164 (199)
484 3q3j_B RHO-related GTP-binding 96.1 0.0035 1.2E-07 56.2 3.8 87 67-157 89-197 (214)
485 3cbq_A GTP-binding protein REM 96.1 0.011 3.8E-07 52.0 7.1 84 73-157 93-182 (195)
486 2hup_A RAS-related protein RAB 96.1 0.0028 9.6E-08 56.1 3.0 23 161-183 31-53 (201)
487 1ukz_A Uridylate kinase; trans 96.1 0.003 1E-07 55.9 3.2 25 159-183 15-39 (203)
488 2r6f_A Excinuclease ABC subuni 96.1 0.0016 5.6E-08 71.5 1.7 57 250-310 490-555 (972)
489 3th5_A RAS-related C3 botulinu 95.1 0.00099 3.4E-08 58.9 0.0 87 68-155 93-197 (204)
490 2hf9_A Probable hydrogenase ni 96.1 0.0028 9.6E-08 56.9 3.0 23 160-182 39-61 (226)
491 1sxj_D Activator 1 41 kDa subu 96.0 0.0033 1.1E-07 60.2 3.6 54 127-183 26-82 (353)
492 1kk1_A EIF2gamma; initiation o 96.0 0.023 7.8E-07 56.5 9.8 81 73-154 103-191 (410)
493 2yc2_C IFT27, small RAB-relate 96.0 0.0013 4.4E-08 57.7 0.6 22 161-182 22-43 (208)
494 2pt5_A Shikimate kinase, SK; a 96.0 0.0031 1.1E-07 53.9 3.0 23 161-183 2-24 (168)
495 2il1_A RAB12; G-protein, GDP, 96.0 0.0048 1.6E-07 54.0 4.3 86 70-156 92-183 (192)
496 4gzl_A RAS-related C3 botulinu 96.0 0.0031 1.1E-07 56.0 3.0 26 158-183 29-54 (204)
497 3ake_A Cytidylate kinase; CMP 96.0 0.003 1E-07 55.9 2.9 23 161-183 4-26 (208)
498 1s0u_A EIF-2-gamma, translatio 96.0 0.011 3.8E-07 58.7 7.3 80 73-153 101-188 (408)
499 2iyv_A Shikimate kinase, SK; t 96.0 0.0031 1.1E-07 54.9 2.8 24 160-183 3-26 (184)
500 2atv_A RERG, RAS-like estrogen 96.0 0.0047 1.6E-07 54.1 4.0 86 70-156 92-184 (196)
No 1
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=100.00 E-value=1.6e-43 Score=345.07 Aligned_cols=259 Identities=36% Similarity=0.635 Sum_probs=202.5
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..+.|..||++++.+..++|||||.++..+ ++.|.|++|+||+|.+.||++||+|++++|+++..|.++...|+|||
T Consensus 33 ~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L 110 (307)
T 1t9h_A 33 DKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFL 110 (307)
T ss_dssp CEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHH
T ss_pred CcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 5689999999999888899999999998643 45799999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHH----HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 101 VEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~----~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
+.|+..+++++||+||+||.++.+ .+.|.+.|.++||+++.+|..++.+++.|.-..+|++++|+|||||||||||
T Consensus 111 ~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLl 190 (307)
T 1t9h_A 111 VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLL 190 (307)
T ss_dssp HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 999999999999999999998754 6788888989999999998877777776655559999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l 256 (391)
|+|+|.. .|..|+|.+ ..+.|+|+|+...++... .+++.|+||+....+..+..+.+
T Consensus 191 n~L~g~~------------~~~~G~I~~----------~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~~l~~lt~e~l 247 (307)
T 1t9h_A 191 NAISPEL------------GLRTNEISE----------HLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEEL 247 (307)
T ss_dssp HHHCC-----------------------------------------CCCCCEEEET-TEEEESSCSCSSCCCTTCCHHHH
T ss_pred HHhcccc------------cccccceee----------ecCCCcccccHHHHhhcC-CEEEecCCCccccccccCCHHHH
Confidence 9999998 778888765 112333444333333333 56789999988765544555667
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
...||++.... ..|.|..|.|..+|+|.+.+ +..++..|..++.++++
T Consensus 248 ~~~f~~~~~~~-----~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKS-----SSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHG-----GGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----hhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 67788755432 47999999999999999865 45688889888887653
No 2
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=100.00 E-value=3.3e-41 Score=334.67 Aligned_cols=255 Identities=28% Similarity=0.535 Sum_probs=196.3
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceec-ccCc---eeEEEEeecccccccccc--------ccccceeEEEEEec
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSID-WVDR---RGMIENVFQRSTEILDPP--------VANVDHLLLLFSMD 87 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~-~~~~---~~~i~~v~~R~~~~~~~~--------~anvD~~liv~s~~ 87 (391)
+|..+.|..|+.++ .++|||||.++..+ +..+ +|.|+.|+||+|.+.||. +||+|++++|++.
T Consensus 66 ~g~~~~~~~r~~~~----~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~~~l~R~~~~~~~~~i~anvD~v~iv~a~- 140 (358)
T 2rcn_A 66 DGEVHRCNIRRTIR----SLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAI- 140 (358)
T ss_dssp TSCEEEEEECTTCC----CCCBTCEEEEECBC-------CCEEEEEECCCSCEEEEC-----CEEEEECCCEEEEEEES-
T ss_pred CCcEEEEEecCCCC----CCCCCcEEEEEeCCCccccccccceEeEEeCCcCcccCcchhhHHHHHHhcCCEEEEEEeC-
Confidence 45678999999886 38999999998543 1111 289999999999999863 8999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEE
Q 016339 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164 (391)
Q Consensus 88 ~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaL 164 (391)
.|.+++..|+|||+.|+..+++++||+||+||+++++ .+.|...|+++||+++.+|..++.++++|++.++|++++|
T Consensus 141 ~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~l 220 (358)
T 2rcn_A 141 LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 220 (358)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEE
Confidence 5999999999999999999999999999999998865 6679899999999999999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHhcCCCCCCcccccCccC-CCCCcceec-CccccccccccCCCcceee--eEEEEeccCCCcccCC
Q 016339 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFE-DQRVGEVSTKSGRGKHTTR--HVSLLPLSGGGYLADT 240 (391)
Q Consensus 165 vGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~-p~~G~I~~~-g~~v~~v~~~~~~~~~ttr--~i~~v~~~~~~~l~Dt 240 (391)
+||||||||||||+|+|.. . |.+|.|.+. |. +.|+|+ .+.++++ +..+.|+
T Consensus 221 vG~sG~GKSTLln~L~g~~------------~~~~~G~I~~~~G~-----------g~~tt~~~~i~~v~q--~~~l~dt 275 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQ------------NEILTNDVSNVSGL-----------GQHTTTAARLYHFPH--GGDVIDS 275 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCS------------SCCCCC------------------------CCCEEEECTT--SCEEEEC
T ss_pred ECCCCccHHHHHHHHhccc------------cccccCCccccCCC-----------CccceEEEEEEEECC--CCEecCc
Confidence 9999999999999999998 7 888888764 32 223433 3444443 4568899
Q ss_pred cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHHH
Q 016339 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 241 pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~~ 309 (391)
|++.+..+..+...++...++++...+ ..|.|+.|.|...|+|.+.. ++.+|+.|.++++++..
T Consensus 276 pgv~e~~l~~l~~~e~~~~~~e~l~~~-----gl~~f~~~~~~~lSG~~~r~ala~gli~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 276 PGVREFGLWHLEPEQITQGFVEFHDYL-----GHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHTCCCCCCCHHHHHHTSGGGGGGT-----TCSSSTTCCSSSCTTCHHHHHHHHTSSCHHHHHHHHHHHHHHC-
T ss_pred ccHHHhhhcCCCHHHHHHHHHHHHHHc-----CCchhcCCCcccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 887665444344445556666655443 25667777777777766543 67999999999998754
No 3
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=4.1e-37 Score=299.32 Aligned_cols=254 Identities=31% Similarity=0.543 Sum_probs=201.1
Q ss_pred CCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHH
Q 016339 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99 (391)
Q Consensus 20 ~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~ 99 (391)
++..+.|..|+.+++.+. ++|||||.++.. .++.|.|+++.+|.+.+.|+.++|+|++++|+++..|.+++..+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~--~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~ 102 (302)
T 2yv5_A 26 DGKTYRGIPRGKVLKKTK-IYAGDYVWGEVV--DPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNM 102 (302)
T ss_dssp TCCEEEEEECSSSTTSSC-CCBTCEEEEEEE--ETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHH
T ss_pred CCEEEEEEEcCCcccCCC-CcCceEEEEEEc--cCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHH
Confidence 356789999999987666 999999999853 35689999999999999999999999999999999998999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHH
Q 016339 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLI 176 (391)
Q Consensus 100 L~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLL 176 (391)
|..++..++++++|+||+||.++.+ .+.|...+.++||+.+.+|..++.+++.+.-.+.|++++|+|||||||||||
T Consensus 103 l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 103 LVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHH
Confidence 9999999999999999999998752 5667777888999999999999999999988889999999999999999999
Q ss_pred HHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHH-HhCChhH
Q 016339 177 NALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQS 255 (391)
Q Consensus 177 n~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l-~~~~~~~ 255 (391)
|+|+ +. .|++|+|.+ ..+.|+|+|+....+.....+++.|+||+....+ ..+..+.
T Consensus 183 n~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 183 SRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp HHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred HHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence 9999 88 888898877 1123344444433444334578899999876555 4555566
Q ss_pred HhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHH
Q 016339 256 LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDE 306 (391)
Q Consensus 256 l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~e 306 (391)
+...||++... .|.|..|.|..+|+|.+.+ +..++..|..++.+
T Consensus 240 l~~~f~~~~~~-------~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 240 VRNYFREFLRY-------QCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp GGGGCGGGHHH-------HHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-------cCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 66677764322 1778889999999998654 33456666555543
No 4
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.97 E-value=7.2e-30 Score=247.99 Aligned_cols=253 Identities=29% Similarity=0.539 Sum_probs=193.9
Q ss_pred CcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeeccccccccccccccceeEEEEEecCCCCCHHHHHHHH
Q 016339 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100 (391)
Q Consensus 21 ~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L 100 (391)
+..+.|..++.+.+....+.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.+++|+++..|.++...+++++
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 5678999999987455678999999876322 34789999999999999999999999999999999887888899999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHH
Q 016339 101 VEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177 (391)
Q Consensus 101 ~~a~~~~~~~~lvlnK~Dl~~~~~---~~~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn 177 (391)
..++..++++++|+||+||.++.+ ...|...+..+ +..+.+|..++.+++.+--.+.|++++|+||||||||||||
T Consensus 109 ~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 109 VLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp HHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHH
T ss_pred HHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHH
Confidence 988888999999999999988754 44555555444 78899999999999998777799999999999999999999
Q ss_pred HHhcCCCCCCcccccCccCCCCCccee---cCccccccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChh
Q 016339 178 ALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254 (391)
Q Consensus 178 ~L~gl~~~~~~~~~~~~~~p~~G~I~~---~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~ 254 (391)
+|+|+. .|++|+|.+ +|..+.... ..+.....+++.|+|++....+..+...
T Consensus 188 ~l~g~~------------~~~~G~i~~~~~~g~~~t~~~-------------~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 188 AINPGL------------KLRVSEVSEKLQRGRHTTTTA-------------QLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSTTC------------CCC-------------CCCSC-------------CEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred Hhcccc------------cccccceecccCCCCCceeee-------------EEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 999999 899999988 666553221 1222223467888998876665555666
Q ss_pred HHhhhchhHHhhcCcccccccccccccccCCCcEEEec-------CHHHHHHHHHHHHHHH
Q 016339 255 SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 255 ~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-------D~~~~~~~~~ll~el~ 308 (391)
++...||+ ++. +.|+|+.|.|..+|+|.+.+ +..++..|...|.++.
T Consensus 243 ~~~~l~~~----~~~---~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse~~ 296 (301)
T 1u0l_A 243 ELKHYFKE----FGD---KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYELL 296 (301)
T ss_dssp HHGGGSTT----SSS---CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----ccc---ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77788886 343 57889889888899988755 4567777777777654
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=1.6e-26 Score=230.93 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=129.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||||+|+|++ +|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC------------CCCCeEEEECCEECCCCC
Confidence 34688999999999999999999 89999999999999999999999999 999999999999886554
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+.+++++|++..+ +.++- +. ....+..+++..+++++|. +||||||||
T Consensus 72 ~~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~---~LSGGqrQR 141 (381)
T 3rlf_A 72 PA-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---ALSGGQRQR 141 (381)
T ss_dssp GG-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGG---GSCHHHHHH
T ss_pred HH-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---HCCHHHHHH
Confidence 32 35689999886443 22221 11 1234556788888899999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHHh
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~~ 312 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++..
T Consensus 142 VaiArAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp HHHHHHH-HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 9999999 9999999999 88999999999999976543
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=3.9e-27 Score=233.73 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=126.0
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++....
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE------------QPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEESSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEECcccc
Confidence 34588999999999999999999 89999999999999999999999999 999999999998873211
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
.. .+...+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||
T Consensus 73 ~~---~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~---~LSGGq~QR 146 (359)
T 3fvq_A 73 TN---LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---ELSGGQQQR 146 (359)
T ss_dssp CB---CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGG---GSCHHHHHH
T ss_pred cc---cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHH
Confidence 11 011236788888875432 11110 1 11234556788888899999 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....+++.+.++.++.
T Consensus 147 ValArAL-~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 147 AALARAL-APDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 8889999988887776543
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=2.4e-26 Score=228.37 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=126.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECCEECCCCCh
Confidence 4578999999888999999999 89999999999999999999999999 9999999999988754432
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
..+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSgGq~QRv 142 (359)
T 2yyz_A 73 -------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT---QLSGGQQQRV 142 (359)
T ss_dssp -------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGG---GSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHH
Confidence 135688888875432 11110 1 11234566788888899998 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (359)
T 2yyz_A 143 ALARAL-VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183 (359)
T ss_dssp HHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 8899999999999987653
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=3.6e-26 Score=227.14 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=127.7
Q ss_pred cCCeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 135 ~g~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+.+++++++|+. ..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~------------~p~~G~I~i~G~~i 92 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQEL 92 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEC
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC------------CCCceEEEECCEEC
Confidence 346889999964 35899999999 89999999999999999999999999 99999999999988
Q ss_pred cccccccCCCcceeeeEEEEeccCCCcc----cCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcc
Q 016339 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL----ADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKAN 270 (391)
Q Consensus 210 ~~v~~~~~~~~~ttr~i~~v~~~~~~~l----~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgG 270 (391)
...+.... +...+.+++++|.+..+. .++ .+. ....+..+++.++.+.+|. +||||
T Consensus 93 ~~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~---~LSGG 167 (366)
T 3tui_C 93 TTLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS---NLSGG 167 (366)
T ss_dssp SSCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTT---TSCHH
T ss_pred CcCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHH
Confidence 66543210 012356899998854321 111 011 1233556677778888998 99999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
||||++||||+ +.+|+++|+| |+.....++++|.+++++.
T Consensus 168 qkQRVaIArAL-~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 168 QKQRVAIARAL-ASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp HHHHHHHHHHT-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 8999999999999997653
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.92 E-value=1.2e-25 Score=223.02 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=126.3
Q ss_pred CCeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++| ++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+
T Consensus 16 ~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE------------RPTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCC
T ss_pred EEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECCcCC
Confidence 357889999 8888999999999 89999999999999999999999999 999999999998875433
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------c--------cchHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------G--------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g--------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++- + .....+..+++.++++++|. +||||||||
T Consensus 84 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~---~LSGGq~QR 153 (355)
T 1z47_A 84 P-------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH---ELSGGQQQR 153 (355)
T ss_dssp G-------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc---cCCHHHHHH
Confidence 2 236788888875432 11110 1 11234556788888889998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 154 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 195 (355)
T 1z47_A 154 VALARAL-APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195 (355)
T ss_dssp HHHHHHH-TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 9999999 9999999999 8999999999999987653
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=6.1e-26 Score=216.90 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=124.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL------------SPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS------------CCSSCEEEETTEETTTSCH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcCCH
Confidence 4578999999999999999999 89999999999999999999999999 9999999999988765433
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC----------c---ccchHHHHhCChhHHhhhchhHHhhcCccccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT----------P---GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt----------p---g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
.. ..+.++++++..... +.++ . ......+..+++.++.+..|. +|||||+||++|
T Consensus 81 ~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~QRv~i 152 (266)
T 4g1u_C 81 KA-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR---VLSGGEQQRVQL 152 (266)
T ss_dssp HH-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG---GCCHHHHHHHHH
T ss_pred HH-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc---cCCHHHHHHHHH
Confidence 21 234567777753321 1111 0 011233456677777788888 999999999999
Q ss_pred ccccccC------CCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLG------EPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 278 aralh~~------eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|||+ +. +|+++|+| |+.....+++++.++.++.
T Consensus 153 AraL-~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~ 197 (266)
T 4g1u_C 153 ARVL-AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197 (266)
T ss_dssp HHHH-HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHH-hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 9999 88 99999999 8999999999999997664
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=1.7e-26 Score=215.21 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=122.5
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD------------APTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS------------CCSEEEEEETTEECCSSCH
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCCCCH
Confidence 4578999999888999999999 99999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcce-eeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 215 KSGRGKHT-TRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 215 ~~~~~~~t-tr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
... ... .+.++++++....+ +.++- +. ....+..+++.+..+.+|. +|||||+||
T Consensus 74 ~~~--~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qr 148 (224)
T 2pcj_A 74 KEL--SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY---ELSGGEQQR 148 (224)
T ss_dssp HHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG---GSCHHHHHH
T ss_pred HHH--HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 100 001 14688888864322 11110 10 1123445666666777787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....+.+++.+++++
T Consensus 149 v~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 149 VAIARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHT-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999 9999999999 899999999999998654
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=1.5e-25 Score=223.56 Aligned_cols=154 Identities=17% Similarity=0.255 Sum_probs=124.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCCCC
Confidence 34578999999888999999999 89999999999999999999999999 999999999998875443
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ..+++++++|++..+ +.++ .+. ....+..+++.++++++|. +||||||||
T Consensus 80 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QR 149 (372)
T 1v43_A 80 P-------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---QLSGGQRQR 149 (372)
T ss_dssp G-------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT---TCCSSCHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh---hCCHHHHHH
Confidence 2 135688888874322 1111 011 1234567788888899998 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 150 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 150 VAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 8899999999999987653
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.3e-25 Score=223.32 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=126.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH
Confidence 4578999999888999999999 89999999999999999999999999 9999999999988755432
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
..+++++++|++..+ +.++- +. ....+..+++.++.+++|. +||||||||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QRv 142 (362)
T 2it1_A 73 -------KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW---QLSGGQQQRV 142 (362)
T ss_dssp -------GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG---GSCHHHHHHH
T ss_pred -------hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChh---hCCHHHHHHH
Confidence 135688888875432 11211 11 1233556777778888898 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....+.++|.++.++.
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (362)
T 2it1_A 143 AIARAL-VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183 (362)
T ss_dssp HHHHHH-TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC
Confidence 999999 9999999999 8899999999999987653
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=9.4e-26 Score=216.62 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=123.1
Q ss_pred cCCeeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++. .+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++..
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~------------~p~~G~I~~~G~~i~~- 74 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL------------KPSSGRILFDNKPIDY- 74 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCC-
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeEEEECCEECCc-
Confidence 3457899999754 5999999999 89999999999999999999999999 9999999999988731
Q ss_pred ccccCCCcceeeeEEEEeccCCC-----cccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG-----YLADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~-----~l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~ 272 (391)
.... .....+.+++++|+... .+.++ .+. ....+..+++.++.+.+|. .|||||+
T Consensus 75 ~~~~--~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGqk 149 (275)
T 3gfo_A 75 SRKG--IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH---CLSFGQK 149 (275)
T ss_dssp SHHH--HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGG---GSCHHHH
T ss_pred cccc--HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc---cCCHHHH
Confidence 1100 01123568888886321 11111 111 1233556777788888888 9999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||++||+|+ +.+|+++|+| |+.....+++++.+++.+
T Consensus 150 QRv~iAraL-~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 150 KRVAIAGVL-VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp HHHHHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 999999999 9999999999 899999999999999733
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=1.9e-25 Score=223.06 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=126.2
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|+++|.++.....
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECCEECccccc
Confidence 4578999999888999999999 99999999999999999999999999 9999999999988754110
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.....+ ..+++++++|++..+ +.++- +. ....+..+++.++++++|. +||||||||+
T Consensus 73 ~~~~~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~---~LSGGq~QRv 148 (372)
T 1g29_1 73 GIFVPP-KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR---ELSGGQRQRV 148 (372)
T ss_dssp TEECCG-GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG---GSCHHHHHHH
T ss_pred cccCCH-hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc---cCCHHHHHHH
Confidence 000001 236789999875433 11211 11 1223456677778888898 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
+||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 149 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 189 (372)
T 1g29_1 149 ALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189 (372)
T ss_dssp HHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999 8999999999999987653
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=1.5e-25 Score=222.41 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=126.3
Q ss_pred CCeeEEEEcCCcc--chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~--~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|++.. +|+++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...
T Consensus 5 ~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASN 72 (353)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECccc
Confidence 3578999998888 999999999 89999999999999999999999999 99999999999887542
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCC-------ccc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADT-------PGF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------pg~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .. +...+++++++|++..+ +.++ .+. ....+..+++.++++++|. +|||||||
T Consensus 73 ~~~-~~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~---~LSGGq~Q 147 (353)
T 1oxx_K 73 GKL-IV-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---ELSGAQQQ 147 (353)
T ss_dssp TEE-SS-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHH
T ss_pred ccc-cC-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh---hCCHHHHH
Confidence 100 00 11246789999875432 1111 011 1234556788888889998 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~~ 311 (391)
|++||||+ +.+|+++|+| |+.....++++|.++.++.
T Consensus 148 RvalAraL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 148 RVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 8899999999999987653
No 17
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=5.2e-26 Score=217.05 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE------------DFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEECC-Cc
Confidence 45688999999888999999999 89999999999999999999999999 999999999998774 21
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC----c----cc--------chHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT----P----GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----p----g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
... .....+.++++++....+ +.++ + +. ....+..+++.+..+.+|. .|||||+|
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---~LSgGqkQ 166 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD---SLSGGQAQ 166 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGG---GSCHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChh---hCCHHHHH
Confidence 110 011235688888864321 1111 0 11 1123455677777777888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 167 Rv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 167 RVAIARAL-AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999999 9999999999 899999999999998654
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=5.9e-26 Score=213.13 Aligned_cols=157 Identities=15% Similarity=0.228 Sum_probs=119.5
Q ss_pred CeeEEEEcCC----ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEEccc
Confidence 4788999974 35899999999 89999999999999999999999999 9999999999988755
Q ss_pred cccccCCCcceeeeEEEEeccCCCc----ccCCc----------ccc--------hHHHHhCChhHH-hhhchhHHhhcC
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY----LADTP----------GFN--------QPSLLKVTKQSL-AQTFPEIKEMLK 268 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp----------g~~--------~~~l~~~~~~~l-~~~~p~~~~~LS 268 (391)
.+.... .....+.+++++|+...+ +.++- +.. ...+..+++.+. .+.+|. +||
T Consensus 72 ~~~~~~-~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~LS 147 (235)
T 3tif_A 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN---QLS 147 (235)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG---GSC
T ss_pred CCHHHH-HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh---hCC
Confidence 443210 000123588888874322 11110 111 122334555443 366777 999
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||+||++||||+ +.+|+++|+| |+.....+++++.+++.+
T Consensus 148 gGq~QRv~iAral-~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 148 GGQQQRVAIARAL-ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp HHHHHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999 899999999999999765
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=2e-25 Score=221.01 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=123.4
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++. +++++||++ +|++++|+||||||||||||+|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECCEECCCCch-
Confidence 47899999887 999999999 89999999999999999999999999 9999999999987754221
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc------------ccchHHHHhCChhHHhhhchhHHhhcCccccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP------------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp------------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iar 279 (391)
..+++++++|++..+ +.++- ......+..+++.++++++|. +||||||||++|||
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~---~LSgGq~QRvalAr 140 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---TLSGGEQQRVALAR 140 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGG---GSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHHHHHH
Confidence 235677777764332 11110 112334666788888889998 99999999999999
Q ss_pred ccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 280 CLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 280 alh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 141 aL-~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 99 9999999999 899999999999998765
No 20
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=7.5e-26 Score=215.74 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=123.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc--
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-- 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~-- 211 (391)
+.+++++++|++..+|++|||++ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVR 74 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEE
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEccccc
Confidence 34578999999888999999999 89999999999999999999999999 9999999999987641
Q ss_pred --------cccccCCCcceeeeEEEEeccCCCc----ccCC----c----cc--------chHHHHhCChhHH-hhhchh
Q 016339 212 --------VSTKSGRGKHTTRHVSLLPLSGGGY----LADT----P----GF--------NQPSLLKVTKQSL-AQTFPE 262 (391)
Q Consensus 212 --------v~~~~~~~~~ttr~i~~v~~~~~~~----l~Dt----p----g~--------~~~~l~~~~~~~l-~~~~p~ 262 (391)
.+... .....+.++++++....+ +.++ + +. ....+..+++.+. .+.+|.
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 75 DKDGQLKVADKNQ--LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp CTTSSEEESCHHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred cccccccccChhh--HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 11100 001235688888864321 1111 0 11 1223556677777 788888
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 153 ---~LSgGq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 153 ---HLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp ---GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 899999999999998654
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=1.1e-25 Score=213.91 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=120.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|++|||++ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++...+.
T Consensus 9 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 4578999999888999999999 99999999999999999999999999 9999999999987643221
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------c---c-------------------cchHHHHhCChhHHhhhchh
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------P---G-------------------FNQPSLLKVTKQSLAQTFPE 262 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------p---g-------------------~~~~~l~~~~~~~l~~~~p~ 262 (391)
.. ...+.+++++|+...+ +.++ . + .....+..+++..+.+.+|.
T Consensus 77 ~~----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 77 AE----LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp HH----HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred HH----HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 10 0123466666653211 0000 0 1 01223456677777788888
Q ss_pred HHhhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 263 ~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+++++.+++++
T Consensus 153 ---~LSgGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 153 ---ELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp ---GSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---hCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999999 9999999999 899999999999998654
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=6.6e-26 Score=215.54 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=122.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCccH
Confidence 44688999999888999999999 89999999999999999999999999 999999999998764311
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCCc-------cc--------chHHHHhCChhHHhhhchhHHhhcCcccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTP-------GF--------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g~--------~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr 274 (391)
. ...+.++++++....+ +.++- +. ....+..+++.++.+..|. .|||||+||
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~qR 154 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS---TYSKGMVRK 154 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG---GCCHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh---hCCHHHHHH
Confidence 1 1234578888764321 11110 11 1123445566667777787 999999999
Q ss_pred cccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 275 ~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++||+|+ +.+|+++|+| |+.....++++|.+++++
T Consensus 155 v~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 155 LLIARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999 899999999999998643
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=4.6e-25 Score=208.54 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++..
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY------------IPENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTT
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 3468899999 4567999999999 99999999999999999999999999 9999999999987754
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+.. ...+.++++++....+ +.++ +... ...+..+++.++.+.+|. ....|||||
T Consensus 76 ~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 76 ADPN-----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp SCHH-----HHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred CCHH-----HHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 3321 1235688888864321 1111 1111 122334455555555541 123899999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+||++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 151 ~qRv~iAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 151 RQRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999 8999999999999984
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=4.8e-25 Score=212.09 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc--c
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--E 211 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~--~ 211 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+|+|+|+. +|++|+|.++|.++. .
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE------------PATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTBCCC---
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCeEEEECCEEccccc
Confidence 44688999999888999999999 99999999999999999999999999 999999999998764 2
Q ss_pred cccccCCCcceeeeEEEEeccCC----C--cccCCc--------c-----------cchHHHHhCChhHHhhhchhHHhh
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG----G--YLADTP--------G-----------FNQPSLLKVTKQSLAQTFPEIKEM 266 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~----~--~l~Dtp--------g-----------~~~~~l~~~~~~~l~~~~p~~~~~ 266 (391)
.... ...+.++++++... . .+.++- + .....+..+++.++.+.++. .
T Consensus 90 ~~~~-----~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~ 161 (279)
T 2ihy_A 90 YSAE-----TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG---Y 161 (279)
T ss_dssp CCHH-----HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG---G
T ss_pred CCHH-----HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh---h
Confidence 2111 12345777777521 1 111110 0 01123455677777788888 9
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|||||+||++||+|+ +.+|+++|+| |+.....++++|.++.++
T Consensus 162 LSgGqkqRv~lAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~ 210 (279)
T 2ihy_A 162 LSTGEKQRVMIARAL-MGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210 (279)
T ss_dssp SCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC
Confidence 999999999999999 9999999999 899999999999998754
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.90 E-value=1.6e-25 Score=207.42 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=116.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++ .+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~--- 74 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPIT--- 74 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGG---
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEhh---
Confidence 345789999988 9999999999 99999999999999999999999999 999999999997763
Q ss_pred cccCCCcceeeeEEEEeccCCCc----ccCC-------------cccchHHHHhCChhHHhhhchhHHhhcCcccccccc
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGY----LADT-------------PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~----l~Dt-------------pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ 276 (391)
. ..+.++++++....+ +.++ .......+..+++... +..+. .|||||+||++
T Consensus 75 ~-------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~---~LSgGqkqrv~ 143 (214)
T 1sgw_A 75 K-------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG---ELSQGTIRRVQ 143 (214)
T ss_dssp G-------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG---GSCHHHHHHHH
T ss_pred h-------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh---hCCHHHHHHHH
Confidence 1 124466776653221 1111 0011223445555555 66677 99999999999
Q ss_pred cccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 277 FNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 277 iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+|+ +.+|+++|+| |+.....+++++.++.++
T Consensus 144 laraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 144 LASTL-LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp HHHHT-TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 99999 9999999999 888999999999998654
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=4.7e-25 Score=207.56 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
.+++++++|++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCH
Confidence 4578999998888999999999 99999999999999999999999999 9999999999987643322
Q ss_pred ccCCCcceeeeEEEEeccCCCc----ccCC------ccc--------chHHHHhC-ChhHHhhhchhHHhhcCccccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY----LADT------PGF--------NQPSLLKV-TKQSLAQTFPEIKEMLKANEPAKC 275 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~----l~Dt------pg~--------~~~~l~~~-~~~~l~~~~p~~~~~LSgGq~qr~ 275 (391)
.. ...+.++++++....+ +.++ +.. ....+..+ ++....+..+. .|||||+||+
T Consensus 76 ~~----~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~---~LSgGq~qrv 148 (240)
T 1ji0_A 76 HV----INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG---TLSGGEQQML 148 (240)
T ss_dssp HH----HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSS---SSCHHHHHHH
T ss_pred HH----HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChh---hCCHHHHHHH
Confidence 10 0123477887763221 1111 000 01123334 25555566676 9999999999
Q ss_pred ccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 276 ~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
+||+|+ +.+|+++|+| |+.....++++|.++++
T Consensus 149 ~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 149 AIGRAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp HHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 9999999999 89999999999999865
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.89 E-value=1.3e-24 Score=211.70 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=121.1
Q ss_pred cCCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|. +..+|++|||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY------------DISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS------------CCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCcEEEECCEEcccC
Confidence 45789999995 567999999999 89999999999999999999999999 99999999999988665
Q ss_pred ccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc----hHHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+.+++++|+...+ +.++ +... ...+..+++.+....+|. ....|||||+
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 4321 346788888874332 2221 1111 122333444455555552 1137999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 197 QRvaiARAL-~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 197 QRVAIARTI-LKAPGIILLDEATSALDTSNERAIQASLAKVCA 238 (306)
T ss_dssp HHHHHHHHH-HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999 89999999999988754
No 28
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.8e-24 Score=217.10 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=122.7
Q ss_pred cCCeeEEEEc--CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~--~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++| ++..+|++|||++ +|++++|+|||||||||||++|+|++ + ++|+|.++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS------------E-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------C-CCeEEEECCEECCc
Confidence 4568899999 6678999999999 89999999999999999999999998 7 89999999998865
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCCc----c----cchHHHHhCChhHHhhhchhHHhh-----------cCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADTP----G----FNQPSLLKVTKQSLAQTFPEIKEM-----------LKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dtp----g----~~~~~l~~~~~~~l~~~~p~~~~~-----------LSg 269 (391)
.+... ..+.+++++|++..+ +.++- . .....+..+++.++.+++|. . |||
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~---~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPG---KLDFVLVDGGCVLSH 158 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTT---GGGCEECTTTTTSCH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhccc---ccccccccccccCCH
Confidence 54321 246788888875433 11111 1 12234566788888888888 6 999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 159 GqrQRvalARAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 159 GHKQLMCLARSV-LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999 7888888888887653
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.89 E-value=1.3e-24 Score=207.62 Aligned_cols=150 Identities=16% Similarity=0.269 Sum_probs=119.0
Q ss_pred CeeEEEEcC--C---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 137 ~~~v~~s~~--~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++++++|+ + ..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI------------EPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEECc
Confidence 578899997 4 56999999999 89999999999999999999999999 999999999997663
Q ss_pred ccccccCCCcceeeeEEEEeccC-CC----cccCC---------c--c---cchHHHHhCChh--HHhhhchhHHhhcCc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG-GG----YLADT---------P--G---FNQPSLLKVTKQ--SLAQTFPEIKEMLKA 269 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~-~~----~l~Dt---------p--g---~~~~~l~~~~~~--~l~~~~p~~~~~LSg 269 (391)
.. ...+.++++++.. .. .+.++ + . .....+..+++. ++.+.+|. .|||
T Consensus 73 ~~--------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---~LSg 141 (266)
T 2yz2_A 73 GY--------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF---FLSG 141 (266)
T ss_dssp HH--------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGG---GSCH
T ss_pred hH--------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChh---hCCH
Confidence 21 1234466666642 11 11010 0 0 122345667777 77888888 9999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
||+||++||+|+ +.+|+++|+| |+.....+.++|.++.++
T Consensus 142 Gq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 142 GEKRRVAIASVI-VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999 9999999999 899999999999998654
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.89 E-value=1.2e-24 Score=204.97 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=115.7
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++++++|++ .|+++||.+ + ++++|+||||||||||+++|+|+. +|++|+|.++|.++.....
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCch-
Confidence 4788999975 499999999 8 999999999999999999999999 9999999999987643211
Q ss_pred cCCCcceeeeEEEEeccCCCc----ccCCc-------c------cchHHHHhCChhHHhhhchhHHhhcCcccccccccc
Q 016339 216 SGRGKHTTRHVSLLPLSGGGY----LADTP-------G------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~----l~Dtp-------g------~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~ia 278 (391)
..+.++++++....+ +.++- + .....+..+++.++.+.+|. .|||||+||++||
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGqkqRv~lA 138 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA---RLSGGERQRVALA 138 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG---GSCHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHHHHHH
Confidence 123455666543211 11110 0 11233556677777788888 9999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+|+ +.+|+++|+| |+.....+++++.++.++
T Consensus 139 ral-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 175 (240)
T 2onk_A 139 RAL-VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp HHH-TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999 9999999999 899999999999998654
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.89 E-value=2.4e-24 Score=206.35 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=114.8
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|++|||.+ +|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY------------QPTGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEcc
Confidence 346889999976 67999999999 89999999999999999999999999 999999999998875
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCC-----cccc--h---HHHHhCChhHH-----------hhhchhHHhh
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFN--Q---PSLLKVTKQSL-----------AQTFPEIKEM 266 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~--~---~~l~~~~~~~l-----------~~~~p~~~~~ 266 (391)
..+.. ...+.++++++....+ +.++ +... . ..+......++ .+..+. .
T Consensus 85 ~~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---~ 156 (271)
T 2ixe_A 85 QYDHH-----YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN---Q 156 (271)
T ss_dssp GBCHH-----HHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT---T
T ss_pred cCCHH-----HHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC---C
Confidence 43321 1235688888764321 1111 0000 0 01111122222 233444 8
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 157 LSgGq~QRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 157 LSGGQRQAVALARAL-IRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp SCHHHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 88999999999998754
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.89 E-value=1.5e-24 Score=204.29 Aligned_cols=154 Identities=15% Similarity=0.218 Sum_probs=114.2
Q ss_pred CeeEEEEc-CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 137 ~~~v~~s~-~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++++++| ++..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY------------QPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS------------CCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhCCH
Confidence 57889999 6678999999999 89999999999999999999999999 9999999999987754332
Q ss_pred ccCCCcceeeeEEEEeccCCCc---ccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCccccc
Q 016339 215 KSGRGKHTTRHVSLLPLSGGGY---LADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKANEPA 273 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~~~---l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgGq~q 273 (391)
.. ..+.++++++....+ +.++ +... ...+..+++.++.+.+|. ....|||||+|
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 146 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHH
Confidence 11 234466777653221 1111 1111 112223344444444431 11389999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|++||||+ +.+|+++|+| |+.....++++|.++.
T Consensus 147 rv~lAral-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 147 RLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 7888889999998886
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=3.3e-24 Score=203.41 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=120.5
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.+. ..++.++
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~-~~i~~v~ 72 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH------------RPIQGKIEVY-QSIGFVP 72 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS------------CCSEEEEEEC-SCEEEEC
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEe-ccEEEEc
Confidence 4578999998 788999999999 99999999999999999999999999 9999999843 4577777
Q ss_pred cccCCCccee--eeEEEEeccCCCcc-cCC---cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYL-ADT---PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l-~Dt---pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~ 287 (391)
+.+....+.| .++.+......+.. ... .......+..+++.++.+..+. .|||||+||++||+|+ +.+|+
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qrv~lAraL-~~~p~ 148 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT---SLSGGQRQLILIARAI-ASECK 148 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG---GSCHHHHHHHHHHHHH-HTTCS
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh---hCCHHHHHHHHHHHHH-HcCCC
Confidence 7655443333 33322110000000 000 0112334566777778888888 9999999999999999 99999
Q ss_pred EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 288 CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 288 ~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
++|+| |+.....+.+++.++.++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999 899999999999998654
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=1.7e-24 Score=204.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=109.9
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC--CCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS--PHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl--~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|++..+|+++||++ +|++++|+||||||||||+++|+|+ . +|++|+|.++|.++...
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~------------~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY------------TVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC------------EEEEEEEEETTEECTTS
T ss_pred EEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------------CCCceEEEECCEECCCC
Confidence 4578999999888999999999 9999999999999999999999998 6 89999999999876433
Q ss_pred ccccCCCcceeeeEEEEeccCCCc----ccCCc--------c----------cchHHHHhCCh-hHHhhhchhHHhh-cC
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGGY----LADTP--------G----------FNQPSLLKVTK-QSLAQTFPEIKEM-LK 268 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~~----l~Dtp--------g----------~~~~~l~~~~~-~~l~~~~p~~~~~-LS 268 (391)
+.... ....++++++....+ +.++- + .....+..+++ ..+.+..|. . ||
T Consensus 73 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---~~LS 145 (250)
T 2d2e_A 73 SPDER----ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN---EGFS 145 (250)
T ss_dssp CHHHH----HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT---CC--
T ss_pred CHHHH----HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc---cCCC
Confidence 22100 011233444432111 00100 0 01122334455 355666666 7 99
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||+||++||+|+ +.+|+++|+| |+.....+.++|.++.+
T Consensus 146 gGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 146 GGEKKRNEILQLL-VLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp --HHHHHHHHHHH-HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999 88999999999998854
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=7.5e-24 Score=202.44 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=115.5
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|++..+|+++||.+ +|++++|+||||||||||+|+|+|+.. .+|++|+|.++|.++...+
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~----------~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED----------YEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT----------CEEEEEEEEETTEEGGGSC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCCeEEEECCEECCcCC
Confidence 45688999998888999999999 899999999999999999999999830 0689999999998775433
Q ss_pred cccCCCcceeeeEEEEeccCCCcc----cCC--------------ccc--------chHHHHhCChh-HHhhhchhHHhh
Q 016339 214 TKSGRGKHTTRHVSLLPLSGGGYL----ADT--------------PGF--------NQPSLLKVTKQ-SLAQTFPEIKEM 266 (391)
Q Consensus 214 ~~~~~~~~ttr~i~~v~~~~~~~l----~Dt--------------pg~--------~~~~l~~~~~~-~l~~~~p~~~~~ 266 (391)
.... ....++++++....+. .++ +.. ....+..+++. .+.+..|. ..
T Consensus 91 ~~~~----~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--~~ 164 (267)
T 2zu0_C 91 PEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN--VG 164 (267)
T ss_dssp HHHH----HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT--TT
T ss_pred HHHH----hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc--cC
Confidence 2110 1234677777633210 000 000 11223334443 34444443 14
Q ss_pred cCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||||+||++||+|+ +.+|+++|+| |+.....++++|.++++
T Consensus 165 LSgGq~QRv~iAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 165 FSGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp CCHHHHHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999 89999999999988753
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.87 E-value=3.7e-23 Score=195.84 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=114.4
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++ .+|+++||.+ +|++++|+||||||||||+++|+|+. +|+ |+|.++|.++...+..
T Consensus 8 ~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~-G~i~~~g~~~~~~~~~- 69 (249)
T 2qi9_C 8 QDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------------SGK-GSIQFAGQPLEAWSAT- 69 (249)
T ss_dssp EEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCE-EEEEETTEEGGGSCHH-
T ss_pred EceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCC-eEEEECCEECCcCCHH-
Confidence 455544 6899999999 99999999999999999999999999 899 9999999876433221
Q ss_pred CCCcceeeeEEEEeccCCCc----ccCC------cc----cchHHHHhCChhHHhhhchhHHhhcCcccccccccccccc
Q 016339 217 GRGKHTTRHVSLLPLSGGGY----LADT------PG----FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~~~----l~Dt------pg----~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh 282 (391)
...+.++++++....+ +.++ +. .....+..+++.++.+..+. .|||||+||++||+|+
T Consensus 70 ----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSgGq~qrv~lAraL- 141 (249)
T 2qi9_C 70 ----KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN---QLSGGEWQRVRLAAVV- 141 (249)
T ss_dssp ----HHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-
T ss_pred ----HHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChh---hCCHHHHHHHHHHHHH-
Confidence 1234577777763321 1111 11 11234556777777788888 9999999999999999
Q ss_pred cCCCc-------EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 283 LGEPG-------CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 283 ~~eP~-------~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|+ ++|+| |+.....+.++|.++.++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999 99999 899999999999998654
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=7.2e-23 Score=194.90 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=114.1
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. +| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY------------DA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CC-CeEEEECCEEhh
Confidence 456889999976 36999999999 89999999999999999999999998 76 899999998775
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc---ccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
..+.. ...+.++++++....+ +.++ +.... ..+..+++.+.....|. ....||||
T Consensus 85 ~~~~~-----~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 85 KYNRN-----SIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp GBCHH-----HHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred hcCHH-----HHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 43321 1234578888764321 1111 01111 11223344433322221 11389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....++++|.++..
T Consensus 160 qkqRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~ 203 (260)
T 2ghi_A 160 ERQRIAIARCL-LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK 203 (260)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999 89999999999998853
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=4.7e-23 Score=192.56 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=108.6
Q ss_pred CCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 136 g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.+
T Consensus 8 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g-~i~~v 74 (229)
T 2pze_A 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG-RISFC 74 (229)
T ss_dssp EEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEECS-CEEEE
T ss_pred EEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCccEEEECC-EEEEE
Confidence 4578899995 467999999999 99999999999999999999999999 99999999988 47777
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCccccccccccccccc
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHL 283 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~ 283 (391)
++.+...+.+- .++.+ +... . .......+...++.+..+.+|.. ...|||||+||++||||+ +
T Consensus 75 ~q~~~~~~~tv~enl~~-----~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral-~ 146 (229)
T 2pze_A 75 SQFSWIMPGTIKENIIF-----GVSY-D-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-Y 146 (229)
T ss_dssp CSSCCCCSBCHHHHHHT-----TSCC-C-HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH-H
T ss_pred ecCCcccCCCHHHHhhc-----cCCc-C-hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH-h
Confidence 77654433321 22211 1000 0 00011122334444444444321 138999999999999999 9
Q ss_pred CCCcEEEec------CHHHHHHHHHH-HHHH
Q 016339 284 GEPGCVVKG------DWERYQYYFQL-LDEI 307 (391)
Q Consensus 284 ~eP~~lllD------D~~~~~~~~~l-l~el 307 (391)
.+|+++|+| |+.....+.++ +.++
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 999999999 88888888875 3444
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.85 E-value=4.9e-22 Score=209.11 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=121.7
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY------------DVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEhhh
Confidence 557899999974 57999999999 89999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.+... ..+++++++|+... .+.++ +... ...+..+++.+..+.+|+ ....||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 43321 34568888886322 22221 1221 123344566666666552 12389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 485 q~qr~~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 485 QRQRVAIARAL-LRDAPVLILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 99999999999 9999999999 88999999999988754
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.85 E-value=6.4e-23 Score=192.65 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|+ +..+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g-~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVAIKG-SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS------------EEEEEEEEECS-CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECC-EEEE
Confidence 34578999997 467999999999 89999999999999999999999999 99999999998 4777
Q ss_pred cccccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHH-----------hhhchhHHhhcCcccccccccc
Q 016339 212 VSTKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-----------AQTFPEIKEMLKANEPAKCSFN 278 (391)
Q Consensus 212 v~~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l-----------~~~~p~~~~~LSgGq~qr~~ia 278 (391)
+++.+... ..| .++.+ +... . .......+..+++.+. .+..+. .|||||+||++||
T Consensus 71 v~Q~~~~~-~~tv~enl~~-----~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~LSgGqkqRv~lA 139 (237)
T 2cbz_A 71 VPQQAWIQ-NDSLRENILF-----GCQL-E-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGV---NLSGGQKQRVSLA 139 (237)
T ss_dssp ECSSCCCC-SEEHHHHHHT-----TSCC-C-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSB---CCCHHHHHHHHHH
T ss_pred EcCCCcCC-CcCHHHHhhC-----cccc-C-HHHHHHHHHHHhhHHHHHhccccccccccCCCC---CCCHHHHHHHHHH
Confidence 77765322 222 22211 1100 0 1111112222222221 123444 8999999999999
Q ss_pred cccccCCCcEEEec------CHHHHHHHHHHHH
Q 016339 279 NCLHLGEPGCVVKG------DWERYQYYFQLLD 305 (391)
Q Consensus 279 ralh~~eP~~lllD------D~~~~~~~~~ll~ 305 (391)
||+ +.+|+++|+| |+.....+++++.
T Consensus 140 raL-~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 140 RAV-YSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHH-HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred HHH-hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 999 9999999999 8888888888874
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=2.7e-22 Score=191.29 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=115.4
Q ss_pred CeeEEEEcCC----ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 137 ~~~v~~s~~~----~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+++++++|++ ..+|+++||.++|++++|+||||||||||+++|+|+. |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-------------p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-------------PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-------------CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-------------CCCcEEEECCEECcch
Confidence 4788999976 6799999999999999999999999999999999984 6789999999776422
Q ss_pred ccccCCCcceeeeEE-EEeccCCC--cccCC-----------cccchHHHHhCChh-HHhhhchhHHhhcCccccccccc
Q 016339 213 STKSGRGKHTTRHVS-LLPLSGGG--YLADT-----------PGFNQPSLLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~-~v~~~~~~--~l~Dt-----------pg~~~~~l~~~~~~-~l~~~~p~~~~~LSgGq~qr~~i 277 (391)
. ..+.++ ++++.... .+.++ .......+..+++. ++.+..|. .|||||+||++|
T Consensus 71 -------~-~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---~LSgGqkqRv~l 139 (263)
T 2pjz_A 71 -------R-NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLY---KLSAGQSVLVRT 139 (263)
T ss_dssp -------S-CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGG---GSCHHHHHHHHH
T ss_pred -------H-HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChh---hCCHHHHHHHHH
Confidence 1 124566 66665322 11111 01112335566776 77777887 999999999999
Q ss_pred ccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 278 aralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+|+ +.+|+++|+| |+.....+.++|.++..
T Consensus 140 AraL-~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 140 SLAL-ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHHH-HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred HHHH-HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 9999 9999999999 88999999999988754
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=2.8e-22 Score=211.65 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=121.6
Q ss_pred cCCeeEEEEcCC-ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 135 ~g~~~v~~s~~~-~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECCEEhhhC
Confidence 456889999964 56999999999 89999999999999999999999999 99999999999988765
Q ss_pred ccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCcccc
Q 016339 213 STKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANEP 272 (391)
Q Consensus 213 ~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq~ 272 (391)
+... ..+++++++|+... .+.++ +.... ..+..++..+..+.+|. ....|||||+
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 5422 34678888887432 22221 22211 22233445555555552 2248999999
Q ss_pred cccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 273 qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 498 Qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 539 (598)
T 3qf4_B 498 QLLAITRAF-LANPKILILDEATSNVDTKTEKSIQAAMWKLME 539 (598)
T ss_dssp HHHHHHHHH-HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999 88999999999988753
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=5.8e-22 Score=208.56 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=121.8
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++|+++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~------------~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY------------DIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT------------CCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------CCCCCeEEECCEEccc
Confidence 456889999974 57999999999 89999999999999999999999999 9999999999988765
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC------cccc----hHHHHhCChhHHhhhchh--------HHhhcCcc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT------PGFN----QPSLLKVTKQSLAQTFPE--------IKEMLKAN 270 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt------pg~~----~~~l~~~~~~~l~~~~p~--------~~~~LSgG 270 (391)
.+... ..+++++++|+... .+.++ +... ...+..+++.+..+.+|+ ....||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 43321 34568888887432 22111 1111 123344566666666552 12389999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|+||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 485 q~qrl~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 485 QRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 88999999999998864
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.84 E-value=4.2e-22 Score=209.47 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=120.4
Q ss_pred cCCeeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|++ ..+|+++||++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEEhhh
Confidence 456889999964 46999999999 89999999999999999999999999 9999999999998866
Q ss_pred cccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+++++++|+... .+.++ |.... ..+...+..+....+|. ....|||||
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 54321 34668888887432 22222 11111 12333444455555552 223799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
|||++||||+ +.+|+++++| |+.....+.+.+.++.+
T Consensus 483 ~Qrv~lAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 483 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVLSK 525 (578)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 9999999999 9999999999 88888899998887753
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.84 E-value=7.5e-22 Score=208.17 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=121.1
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~------------~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY------------DPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS------------CCSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECCEEhh
Confidence 567899999975 35999999999 89999999999999999999999999 999999999998876
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCC-----cc---cc----hHHHHhCChhHHhhhchhH--------Hhhc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADT-----PG---FN----QPSLLKVTKQSLAQTFPEI--------KEML 267 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg---~~----~~~l~~~~~~~l~~~~p~~--------~~~L 267 (391)
..+... ..+++++++|+... .+.++ +. .. ...+..+++.++.+.+|+. ...|
T Consensus 410 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 410 QLNPVW-----LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp TBCHHH-----HHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred hCCHHH-----HHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 544321 34568888887432 11111 11 11 1223445555555555421 1379
Q ss_pred CcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 268 KANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 268 SgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||+||++||||+ +.+|+++|+| |+.....+.+.+.++.+
T Consensus 485 SgGq~qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 485 SGGQKQRIAIARAL-LKNPKILLLDEATSALDAENEYLVQEALDRLMD 531 (595)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999 89999999999998865
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=1.7e-21 Score=205.17 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=118.9
Q ss_pred cCCeeEEEEcC--CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 135 ~g~~~v~~s~~--~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+.+++++++|. +..+|+++||++ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~------------~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI------------DPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS------------CCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCcEEEECCEEccc
Confidence 45688999994 457999999999 89999999999999999999999999 9999999999998876
Q ss_pred cccccCCCcceeeeEEEEeccCCCc---ccCC-----cccch----HHHHhCChhHHhhhchh--------HHhhcCccc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGGGY---LADT-----PGFNQ----PSLLKVTKQSLAQTFPE--------IKEMLKANE 271 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~~~---l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~--------~~~~LSgGq 271 (391)
.+... ..+++++++|+...+ +.++ +.... ..+...+..+....+|. ....|||||
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 55432 346788998874322 2222 11111 12223344444333332 113799999
Q ss_pred ccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 272 PAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 272 ~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||++||||+ +.+|+++|+| |+.....+.+.+.++.
T Consensus 485 rQrv~lARal-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 526 (587)
T 3qf4_A 485 KQRLSIARAL-VKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526 (587)
T ss_dssp HHHHHHHHHH-HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence 9999999999 9999999999 8899999999988864
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=9.6e-21 Score=197.48 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=112.2
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
.+.++|++ ..+..+++.+ +|++++|+||||||||||+++|+|+. +|++|+|.+++..++.+++...
T Consensus 274 ~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~i~~~~q~~~ 340 (538)
T 3ozx_A 274 KIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI------------TADEGSVTPEKQILSYKPQRIF 340 (538)
T ss_dssp CEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSBCCEESSCCCEEEECSSCC
T ss_pred ceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCeeeEeechhcc
Confidence 34555654 3355556677 89999999999999999999999999 9999999999888888777532
Q ss_pred CCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 218 RGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 218 ~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
.....+ .++... ...............+..+++..+.++.|. .|||||+||++||+|+ +.+|+++|+|
T Consensus 341 ~~~~~tv~~~l~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGq~QRv~iAraL-~~~p~lLlLDEPT 413 (538)
T 3ozx_A 341 PNYDGTVQQYLENA---SKDALSTSSWFFEEVTKRLNLHRLLESNVN---DLSGGELQKLYIAATL-AKEADLYVLDQPS 413 (538)
T ss_dssp CCCSSBHHHHHHHH---CSSTTCTTSHHHHHTTTTTTGGGCTTSBGG---GCCHHHHHHHHHHHHH-HSCCSEEEEESTT
T ss_pred cccCCCHHHHHHHh---hhhccchhHHHHHHHHHHcCCHHHhcCChh---hCCHHHHHHHHHHHHH-HcCCCEEEEeCCc
Confidence 211111 111110 011110111122344556777778888888 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~~ 311 (391)
|+.....++++|.++..+.
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~ 435 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRER 435 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHhC
Confidence 8899999999999987653
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=3e-21 Score=186.58 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=100.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++ ...+|+++||.+ +|++++|+||||||||||+++|+|+. +|++|+|.++| .++.++
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g-~i~~v~ 105 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG-RISFCS 105 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS------------CEEEEEEECCS-CEEEEC
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECC-EEEEEe
Confidence 344556554 357899999999 89999999999999999999999999 99999999988 467777
Q ss_pred cccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhH--------HhhcCcccccccccccccccC
Q 016339 214 TKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------KEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 214 ~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~--------~~~LSgGq~qr~~iaralh~~ 284 (391)
+.+..++.+- .++. . .. .+ .......+..+++.+....+|.. ...|||||+||++||+|+ +.
T Consensus 106 Q~~~l~~~tv~enl~--~----~~-~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL-~~ 176 (290)
T 2bbs_A 106 QNSWIMPGTIKENII--G----VS-YD-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-YK 176 (290)
T ss_dssp SSCCCCSSBHHHHHH--T----TC-CC-HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH-HS
T ss_pred CCCccCcccHHHHhh--C----cc-cc-hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH-HC
Confidence 7654433211 2221 0 00 00 00011123334454444444421 138999999999999999 99
Q ss_pred CCcEEEec------CHHHHHHHHHH-HHHH
Q 016339 285 EPGCVVKG------DWERYQYYFQL-LDEI 307 (391)
Q Consensus 285 eP~~lllD------D~~~~~~~~~l-l~el 307 (391)
+|+++|+| |+.....++++ +.++
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~ 206 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKL 206 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 99999999 88888888875 3444
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=3.7e-21 Score=218.99 Aligned_cols=156 Identities=17% Similarity=0.253 Sum_probs=123.6
Q ss_pred cCCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.|++|+++|.+. .+|++|||.+ +|+++|||||||||||||+++|.|++ +|++|+|.+||.++.
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~------------~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY------------DTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS------------CCSSSEEEETTEETT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc------------cCCCCEEEECCEEhh
Confidence 4578999999543 5899999999 89999999999999999999999999 999999999999998
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-------cccchH----HHHhCChhHHhhhchhH--------HhhcC
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-------PGFNQP----SLLKVTKQSLAQTFPEI--------KEMLK 268 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-------pg~~~~----~l~~~~~~~l~~~~p~~--------~~~LS 268 (391)
.++... .++++++++|+. .+.+.+| +...+. .+...++.+....+|+- ...||
T Consensus 1145 ~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1145 TLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred hCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 876643 567799999983 3334333 333333 23445555555555542 23799
Q ss_pred cccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 269 gGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||||||++||||+ +.+|+++|+| |++.-..+++.|+++.
T Consensus 1220 gGQrQriaiARAl-lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1220 GGQKQRIAIARAL-VRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHHHHH-HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 9999999999999 9999999999 8888888888776643
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=6.8e-21 Score=216.83 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=122.9
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|.+ ..+|+++||.+ +|++++||||||||||||+++|.|++ +|++|+|.++|.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~------------~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY------------DVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS------------CCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc------------ccccCcccCCCccch
Confidence 457899999953 46899999999 89999999999999999999999999 999999999999988
Q ss_pred ccccccCCCcceeeeEEEEeccC---CCcccCC-----cccchH----HHHhCChhHHhhhchhHH--------hhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADT-----PGFNQP----SLLKVTKQSLAQTFPEIK--------EMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dt-----pg~~~~----~l~~~~~~~l~~~~p~~~--------~~LSgG 270 (391)
.++... .+.++++++|+. ++.+.++ |...+. .+...++.+....+|+-. ..||||
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 776543 457789999873 3333333 333332 233445555555565422 379999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
||||++||||+ ..+|+++|+| |++....+.+.|.++.+
T Consensus 559 QkQRiaiARAl-~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 559 QKQRIAIARAL-VRNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp HHHHHHHHHHH-TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 99999999999 9999999999 67777788888877654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=1.3e-19 Score=189.15 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=111.0
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc---------eecC
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I---------~~~g 206 (391)
++++++|++. .++++++ .+ +|++++|+||||||||||+|+|+|+. .|++|++ .++|
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~------------~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL------------IPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSHHHHHHHTTT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCccCcchhhhHHhhCC
Confidence 5789999876 4899999 88 99999999999999999999999999 8899986 3455
Q ss_pred ccccccccccCCCcceeeeEEEEeccCCC-------ccc------CCcccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLA------DTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~~-------~l~------Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
..+........ . ....++++++.... .+. +........+..+++..+.++.+. .|||||+|
T Consensus 92 ~~~~~~~~~~~-~--~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~---~LSgGekQ 165 (538)
T 1yqt_A 92 NELQNYFEKLK-N--GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQ---HLSGGELQ 165 (538)
T ss_dssp STHHHHHHHHH-T--TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGG---GCCHHHHH
T ss_pred ccHHHHHHHHH-H--HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChh---hCCHHHHH
Confidence 44322110000 0 01123333332110 000 111223445666777777788888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|+++++.
T Consensus 166 Rv~iAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 207 (538)
T 1yqt_A 166 RVAIAAAL-LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207 (538)
T ss_dssp HHHHHHHH-HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 889999999999998753
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.78 E-value=5e-20 Score=209.21 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cCCeeEEEEcCC---ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~---~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+.+++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~------------~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY------------DPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS------------CCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEHH
Confidence 457899999964 36999999999 89999999999999999999999999 999999999999887
Q ss_pred ccccccCCCcceeeeEEEEeccCCC---cccCC-----cccch----HHHHhCChhHHhhhchhH--------HhhcCcc
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADT-----PGFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKAN 270 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~---~l~Dt-----pg~~~----~~l~~~~~~~l~~~~p~~--------~~~LSgG 270 (391)
..+... ..+++++++|+... .+.++ +.... ..+...+..+....+|.- ...||||
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 665432 34668999987432 22222 11111 122233444444445432 1279999
Q ss_pred cccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 271 EPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 271 q~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
||||++||||+ +.+|+++|+| |++....+.+.+.++.
T Consensus 531 q~QriaiARal-~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 531 QKQRIAIARAL-VRNPKILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999 9999999999 8888888888887754
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=1.7e-19 Score=190.57 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=112.2
Q ss_pred eeEEEEcCCc-cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc---------eecC
Q 016339 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (391)
Q Consensus 138 ~~v~~s~~~~-~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I---------~~~g 206 (391)
++++++|++. .++++++ .+ +|++++|+||||||||||+|+|+|+. .|++|++ .+.|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll------------~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL------------IPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS------------CCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC------------CCCCCccccccchhhheeCC
Confidence 6789999876 4899999 88 99999999999999999999999999 8999986 3455
Q ss_pred ccccccccccCCCcceeeeEEEEeccCC-------Ccc------cCCcccchHHHHhCChhHHhhhchhHHhhcCccccc
Q 016339 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG-------GYL------ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (391)
Q Consensus 207 ~~v~~v~~~~~~~~~ttr~i~~v~~~~~-------~~l------~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~q 273 (391)
..+........ .....+.+.++... +.+ .+........+..+++..+.++.+. .|||||+|
T Consensus 162 ~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~---~LSGGekQ 235 (607)
T 3bk7_A 162 NELQNYFERLK---NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---QLSGGELQ 235 (607)
T ss_dssp STHHHHHHHHH---HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGG---GCCHHHHH
T ss_pred Eehhhhhhhhh---hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChh---hCCHHHHH
Confidence 44422110000 00112233332210 010 0111233455667788888888888 99999999
Q ss_pred ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 274 r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
|++||+|+ +.+|+++|+| |+.....+.++|.++.+.
T Consensus 236 RvaIAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 277 (607)
T 3bk7_A 236 RVAIAAAL-LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277 (607)
T ss_dssp HHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999 899999999999998753
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.75 E-value=2e-19 Score=204.38 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=118.0
Q ss_pred CCeeEEEEcCCc---cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 136 GYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 136 g~~~v~~s~~~~---~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
.+++++++|.+. .+|+++||.+ +|+++||+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 1032 ~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp EEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSSSCTTS
T ss_pred EEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEEccc
Confidence 356788889653 5899999999 89999999999999999999999999 9999999999998865
Q ss_pred cccccCCCcceeeeEEEEeccCC---CcccCC-----c--ccch----HHHHhCChhHHhhhchhH--------HhhcCc
Q 016339 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADT-----P--GFNQ----PSLLKVTKQSLAQTFPEI--------KEMLKA 269 (391)
Q Consensus 212 v~~~~~~~~~ttr~i~~v~~~~~---~~l~Dt-----p--g~~~----~~l~~~~~~~l~~~~p~~--------~~~LSg 269 (391)
.+... ..+++++++|+.. +.+.++ + .... ..+...++.+....+|.- ...|||
T Consensus 1100 ~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1100 LNVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred CCHHH-----HHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 54321 3466889998742 222222 1 1111 122333444555555532 137999
Q ss_pred ccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 270 NEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 270 Gq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||++|||++ +.+|+++|+| |+.....+.+.++++.
T Consensus 1175 Gq~Qrv~iARal-~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~ 1218 (1284)
T 3g5u_A 1175 GQKQRIAIARAL-VRQPHILLLDEATSALDTESEKVVQEALDKAR 1218 (1284)
T ss_dssp HHHHHHHHHHHH-HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC
Confidence 999999999999 9999999999 8899999999887753
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=1.2e-19 Score=191.76 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=107.0
Q ss_pred eeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
++++++|++. .++.+++.+ +|++++|+||||||||||+++|+|+. +|++|+|.+ ...++.+++..
T Consensus 361 ~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~-~~~i~~v~Q~~ 426 (607)
T 3bk7_A 361 PRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKVEW-DLTVAYKPQYI 426 (607)
T ss_dssp CCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBSCCCC-CCCEEEECSSC
T ss_pred eceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEE-eeEEEEEecCc
Confidence 3455566543 566677777 89999999999999999999999999 999999987 34566666653
Q ss_pred CCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec---
Q 016339 217 GRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG--- 292 (391)
Q Consensus 217 ~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD--- 292 (391)
......| ... +...... ...........+..+++.++.++.+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 427 ~~~~~~tv~e~--~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGe~QRv~iAraL-~~~p~lLlLDEPt 499 (607)
T 3bk7_A 427 KAEYEGTVYEL--LSKIDSS-KLNSNFYKTELLKPLGIIDLYDRNVE---DLSGGELQRVAIAATL-LRDADIYLLDEPS 499 (607)
T ss_dssp CCCCSSBHHHH--HHHHHHH-HHHCHHHHHHTHHHHTCTTTTTSBGG---GCCHHHHHHHHHHHHH-TSCCSEEEEECTT
T ss_pred cCCCCCcHHHH--HHhhhcc-CCCHHHHHHHHHHHcCCchHhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCc
Confidence 3211111 000 0000000 00011112233455666667777787 9999999999999999 9999999999
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 016339 293 ---DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 ---D~~~~~~~~~ll~el~~~ 310 (391)
|+.....+.++|.++..+
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999998654
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=1.7e-19 Score=188.09 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=105.6
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccC
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~ 217 (391)
++.++|++ ..++.++|.+ +|++++|+||||||||||+++|+|+. +|++|+|.+ ...++.+++...
T Consensus 292 ~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~-~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 292 RLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKIEW-DLTVAYKPQYIK 357 (538)
T ss_dssp CEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBCCCCC-CCCEEEECSSCC
T ss_pred eEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEE-CceEEEEecCCc
Confidence 44555654 2466667777 89999999999999999999999999 999999987 345666666432
Q ss_pred CCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-----
Q 016339 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG----- 292 (391)
Q Consensus 218 ~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD----- 292 (391)
.....|-.- .+.. ...............+..+++....++.|. .||||||||++||+++ +.+|+++|+|
T Consensus 358 ~~~~~tv~~-~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~LSGGe~qrv~lAraL-~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 358 ADYEGTVYE-LLSK-IDASKLNSNFYKTELLKPLGIIDLYDREVN---ELSGGELQRVAIAATL-LRDADIYLLDEPSAY 431 (538)
T ss_dssp CCCSSBHHH-HHHH-HHHHHHTCHHHHHHTTTTTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-TSCCSEEEEECTTTT
T ss_pred CCCCCcHHH-HHHh-hhccCCCHHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEEeCCccc
Confidence 211111000 0000 000000001112233445566667777888 9999999999999999 9999999999
Q ss_pred -CHHHHHHHHHHHHHHHHH
Q 016339 293 -DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 293 -D~~~~~~~~~ll~el~~~ 310 (391)
|+.....++++|.++..+
T Consensus 432 LD~~~~~~i~~~l~~l~~~ 450 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEK 450 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 899999999999998654
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.8e-18 Score=182.59 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=104.6
Q ss_pred EEEEcCC-ccchHHHhhcc-c-----CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccc
Q 016339 140 LFCSVES-KLGLDSLLQRL-R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (391)
Q Consensus 140 v~~s~~~-~~~L~~ls~~i-~-----Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v 212 (391)
+.++|.+ ..++++++|.+ + |++++|+||||||||||+++|+|+. +|++|+. +....++.+
T Consensus 352 ~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~~-~~~~~i~~~ 418 (608)
T 3j16_B 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL------------KPDEGQD-IPKLNVSMK 418 (608)
T ss_dssp SCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS------------CCSBCCC-CCSCCEEEE
T ss_pred eeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC------------CCCCCcC-ccCCcEEEe
Confidence 3455654 34788899988 4 4889999999999999999999999 8888874 223344444
Q ss_pred ccccCCCccee-eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 213 STKSGRGKHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 213 ~~~~~~~~~tt-r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
++........+ .. .+....... ...+.+....+..+++.++.+..|. .|||||+||++||+|+ +.+|+++|+
T Consensus 419 ~q~~~~~~~~tv~e--~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~---~LSGGqkQRv~iAraL-~~~p~lLlL 491 (608)
T 3j16_B 419 PQKIAPKFPGTVRQ--LFFKKIRGQ-FLNPQFQTDVVKPLRIDDIIDQEVQ---HLSGGELQRVAIVLAL-GIPADIYLI 491 (608)
T ss_dssp CSSCCCCCCSBHHH--HHHHHCSST-TTSHHHHHHTHHHHTSTTTSSSBSS---SCCHHHHHHHHHHHHT-TSCCSEEEE
T ss_pred cccccccCCccHHH--HHHHHhhcc-cccHHHHHHHHHHcCChhhhcCChh---hCCHHHHHHHHHHHHH-HhCCCEEEE
Confidence 44321110001 00 000000000 0112223334556677777888888 9999999999999999 999999999
Q ss_pred c------CHHHHHHHHHHHHHHHHHH
Q 016339 292 G------DWERYQYYFQLLDEIRIRE 311 (391)
Q Consensus 292 D------D~~~~~~~~~ll~el~~~~ 311 (391)
| |+.....+.++|.++..+.
T Consensus 492 DEPT~gLD~~~~~~i~~ll~~l~~~~ 517 (608)
T 3j16_B 492 DEPSAYLDSEQRIICSKVIRRFILHN 517 (608)
T ss_dssp CCTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9 8899999999999986543
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.2e-18 Score=180.70 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=102.5
Q ss_pred eeEEEEcCCcc-chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcce-----------e
Q 016339 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------F 204 (391)
Q Consensus 138 ~~v~~s~~~~~-~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~-----------~ 204 (391)
++++++|+... .++.++ .+ +|++++|+||||||||||+|+|+|+. +|++|+|. +
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll------------~P~~G~i~~~~~~~~~~~~~ 147 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQ------------KPNLGRFDDPPEWQEIIKYF 147 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSSCHHHHHHHT
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCceEecccchhhhhhee
Confidence 35788887553 455555 34 89999999999999999999999999 99999983 3
Q ss_pred cCccccccccccCCCcceeeeE--EEEeccCC-------C---cc--------cCCcccchHHHHhCChhHHhhhchhHH
Q 016339 205 EDQRVGEVSTKSGRGKHTTRHV--SLLPLSGG-------G---YL--------ADTPGFNQPSLLKVTKQSLAQTFPEIK 264 (391)
Q Consensus 205 ~g~~v~~v~~~~~~~~~ttr~i--~~v~~~~~-------~---~l--------~Dtpg~~~~~l~~~~~~~l~~~~p~~~ 264 (391)
.|..+....... ....+ .+.++... + .+ ..........+..+++..+.++.+.
T Consensus 148 ~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 220 (608)
T 3j16_B 148 RGSELQNYFTKM-----LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-- 220 (608)
T ss_dssp TTSTHHHHHHHH-----HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTT--
T ss_pred cChhhhhhhhHH-----HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChH--
Confidence 333221111100 00000 11111100 0 00 0001122334556677777888888
Q ss_pred hhcCcccccccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 265 EMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 265 ~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+|+ +.+|+++|+| |+.....+.+++++++.+
T Consensus 221 -~LSgGe~Qrv~iAraL-~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~ 270 (608)
T 3j16_B 221 -KLSGGELQRFAIGMSC-VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270 (608)
T ss_dssp -TCCHHHHHHHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT
T ss_pred -HCCHHHHHHHHHHHHH-HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 9999999999 889999999999988654
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.69 E-value=9.2e-18 Score=174.99 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=95.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc-----------eecCcccccccccc-CCCcceeee
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKS-GRGKHTTRH 225 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I-----------~~~g~~v~~v~~~~-~~~~~ttr~ 225 (391)
+|++++|+||||||||||+|+|+|++ .|++|+| .+.|.++....+.. .........
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~------------~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI------------IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS------------CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 89999999999999999999999999 9999998 46665553322110 000001111
Q ss_pred EEEEeccCC---Ccc------cCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec----
Q 016339 226 VSLLPLSGG---GYL------ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG---- 292 (391)
Q Consensus 226 i~~v~~~~~---~~l------~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD---- 292 (391)
+.++.+... +.+ .+........+..+++..+.++.+. .|||||+||++||+|+ +.+|+++|+|
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~---~LSgGe~Qrv~iA~aL-~~~p~illlDEPts 167 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDAN---ILSGGGLQRLLVAASL-LREADVYIFDQPSS 167 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGG---GCCHHHHHHHHHHHHH-HSCCSEEEEESTTT
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChh---hCCHHHHHHHHHHHHH-HcCCCEEEEECCcc
Confidence 111111100 000 0112233445667777778888888 9999999999999999 9999999999
Q ss_pred --CHHHHHHHHHHHHHHHH
Q 016339 293 --DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 293 --D~~~~~~~~~ll~el~~ 309 (391)
|+.....+.++|.++++
T Consensus 168 ~LD~~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK 186 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHHhC
Confidence 88899999999999864
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=5e-18 Score=186.34 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=51.5
Q ss_pred eeEEEEcCC--ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 138 ~~v~~s~~~--~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
++++++|++ ..+|+++||.+ +|++++|+||||||||||+++|+|+. .|++|+|++++
T Consensus 675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll------------~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL------------LPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS------------CCSEEEEEECT
T ss_pred EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEcC
Confidence 456778864 56899999999 99999999999999999999999999 99999999875
No 61
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.66 E-value=4.7e-17 Score=154.87 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=107.5
Q ss_pred cccccccccceeEEEEEecCCCCCHH-HHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~-~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
..+..++|+|.++.|+++..|..... .++ ++ ++++++|+||+||++++..+.|.+.+++.|++. .+|..++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 34668899999999999998855422 344 33 899999999999999887888999888889987 8999999
Q ss_pred cchHHHhhcccCC--EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 148 LGLDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 148 ~~L~~ls~~i~Ge--~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
.+++.+.-.+... .++|+|.||+|||||+|.|.|... . .++. .++ +|+.
T Consensus 86 ~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~------------~----------~~~~---~~g----~T~~ 136 (262)
T 3cnl_A 86 PRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA------------S----------SVGA---QPG----ITKG 136 (262)
T ss_dssp CHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CC
T ss_pred cCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc------------c----------ccCC---CCC----Cccc
Confidence 9999988888664 899999999999999999998761 1 1111 112 4444
Q ss_pred EEEEeccCCCcccCCcccchHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPS 247 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~ 247 (391)
...+....+..+.||||+..+.
T Consensus 137 ~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 137 IQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp SCEEECTTSCEEESSCEECCCC
T ss_pred eEEEEeCCCEEEEECCCcccCc
Confidence 4455555566799999987653
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.66 E-value=3.7e-17 Score=174.60 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=44.9
Q ss_pred hhhchhHHhhcCcccccccccccccccCCCc--EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++++. .|||||+||++||||+ +.+|+ ++|+| |+.....++++|.+++..
T Consensus 196 ~~~~~~---~LSGGe~QRv~iArAL-~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 253 (670)
T 3ux8_A 196 LSRSAG---TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253 (670)
T ss_dssp TTCBGG---GSCHHHHHHHHHHHHH-HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT
T ss_pred hcCCcc---cCCHHHHHHHHHHHHH-hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc
Confidence 456677 9999999999999999 99988 99999 889999999999999754
No 63
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.64 E-value=3.3e-16 Score=150.58 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=103.6
Q ss_pred ccccccccceeEEEEEecCCCCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCcc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~-~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~ 148 (391)
....++++|.++.|+.+..|.... ..+++++ .+++.++|+||+||++++..+.|.+.+.+.|++.+.+|..++.
T Consensus 17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 17 VTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCT
T ss_pred HHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 345688999999999999886553 4678776 5899999999999999887888988888889999999988777
Q ss_pred chHHHhhcc------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 149 ~L~~ls~~i------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+++.+.-.+ .+-.++|+|.+|||||||+|.|.|... .
T Consensus 92 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~-------------------------~ 146 (282)
T 1puj_A 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI-------------------------A 146 (282)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC-------------------------C
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce-------------------------e
Confidence 766554322 123699999999999999999998751 1
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchH
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~ 246 (391)
.++..++ +|++...+.......+.||||+..+
T Consensus 147 ~~~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 147 KTGDRPG----ITTSQQWVKVGKELELLDTPGILWP 178 (282)
T ss_dssp ----------------CCEEETTTEEEEECCCCCCS
T ss_pred ecCCCCC----eeeeeEEEEeCCCEEEEECcCcCCC
Confidence 1222222 5555555555555679999998754
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=3.8e-16 Score=171.51 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=96.3
Q ss_pred eEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccccc-
Q 016339 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS- 216 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~- 216 (391)
+++++|++..+|+++||.+ +|++++|+||||||||||+++|+|-.. ++ .+..+.+ .+..+++..
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i-----~g----~~~~~~~-----~~~~v~q~~~ 505 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV-----DG----FPTQEEC-----RTVYVEHDID 505 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS-----TT----CCCTTTS-----CEEETTCCCC
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CC----Cccccce-----eEEEEccccc
Confidence 4788899889999999999 999999999999999999999995220 00 0111110 112222211
Q ss_pred CCCccee--eeEEEEeccCCCcccCCcccchHHHHhCCh-hHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-
Q 016339 217 GRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG- 292 (391)
Q Consensus 217 ~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~-~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD- 292 (391)
......| .++.+ ...+ ........+..+++ ..+.+..+. .|||||+||++||+++ +.+|+++|+|
T Consensus 506 ~~~~~ltv~e~l~~---~~~~----~~~~v~~~L~~lgL~~~~~~~~~~---~LSGGqkQRvaLArAL-~~~P~lLLLDE 574 (986)
T 2iw3_A 506 GTHSDTSVLDFVFE---SGVG----TKEAIKDKLIEFGFTDEMIAMPIS---ALSGGWKMKLALARAV-LRNADILLLDE 574 (986)
T ss_dssp CCCTTSBHHHHHHT---TCSS----CHHHHHHHHHHTTCCHHHHHSBGG---GCCHHHHHHHHHHHHH-HTTCSEEEEES
T ss_pred ccccCCcHHHHHHH---hhcC----HHHHHHHHHHHcCCChhhhcCCcc---cCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 1111111 11100 0000 01122334666777 467778888 9999999999999999 9999999999
Q ss_pred -----CHHHHHHHHHHHHH
Q 016339 293 -----DWERYQYYFQLLDE 306 (391)
Q Consensus 293 -----D~~~~~~~~~ll~e 306 (391)
|+.....+.++|.+
T Consensus 575 PTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHh
Confidence 88999999988877
No 65
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=142.64 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=61.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCC----Cc
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG----GY 236 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~----~~ 236 (391)
+++|+||||||||||||+|+|+. .|++|+|.++|.++... . ..+.++++++..+ ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~------------~~~~G~i~~~g~~i~~~---~-----~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ------------VSRKASSWNREEKIPKT---V-----EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------------C------------CCCC---C-----SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------------CCCCCccccCCcccCcc---e-----eeeeeEEEeecCCCcCCce
Confidence 58999999999999999999998 89999999998765211 0 1245666666533 23
Q ss_pred ccCCcccchH--------HHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 237 LADTPGFNQP--------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 237 l~Dtpg~~~~--------~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+.|++++... .+..+....+.+.+++ +|||||+||+++||++ +. ++++|
T Consensus 64 v~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~---~LS~G~~qrv~iaRal-~~---lllld 120 (270)
T 3sop_A 64 VIDTPGFGDQINNENCWEPIEKYINEQYEKFLKE---EVNIARKKRIPDTRVH-CC---LYFIS 120 (270)
T ss_dssp EECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHH---HSCTTCCSSCCCCSCC-EE---EEEEC
T ss_pred EEechhhhhhcccHHHHHHHHHHHHHHHHhhhHH---hcCcccchhhhhheee-ee---eEEEe
Confidence 6777766421 1222222344555565 9999999999999997 53 77777
No 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=2.2e-15 Score=152.13 Aligned_cols=130 Identities=17% Similarity=0.111 Sum_probs=91.2
Q ss_pred ccchHHHhhcc-cCC--------------------EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceec
Q 016339 147 KLGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge--------------------~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~ 205 (391)
..++++|++.+ +|+ +++|+||||||||||||+|+|+. .|++|+|.++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~------------~p~~GsI~~~ 103 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG------------NEEEGAAKTG 103 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC------------TTSTTSCCCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC------------CccCceEEEC
Confidence 46899999999 899 99999999999999999999999 9999999998
Q ss_pred CccccccccccCCCcceeeeEEEEeccC---CCcccCCcccc------hHHHHhCChhHHhhhchhHHhhcCcc--cccc
Q 016339 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN------QPSLLKVTKQSLAQTFPEIKEMLKAN--EPAK 274 (391)
Q Consensus 206 g~~v~~v~~~~~~~~~ttr~i~~v~~~~---~~~l~Dtpg~~------~~~l~~~~~~~l~~~~p~~~~~LSgG--q~qr 274 (391)
|.++.. . .++++.. ...+.|+|++. ...+..+++.+. +.++ .+|+| |+||
T Consensus 104 g~~~t~-------------~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~----~lS~G~~~kqr 164 (413)
T 1tq4_A 104 VVEVTM-------------E-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFI----IISATRFKKND 164 (413)
T ss_dssp C----C-------------C-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEE----EEESSCCCHHH
T ss_pred Ceecce-------------e-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeE----EeCCCCccHHH
Confidence 865421 0 1122221 22345666543 223334443322 1222 38999 9999
Q ss_pred cccccccccC----------CCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 275 CSFNNCLHLG----------EPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 275 ~~iaralh~~----------eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
+++|+++ .+ +|+++++| |+.....+++++.++.
T Consensus 165 v~la~aL-~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 165 IDIAKAI-SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHH-HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 9999999 77 77777777 5666777888888875
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.49 E-value=2.3e-15 Score=138.47 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=76.8
Q ss_pred EEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc
Q 016339 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ 221 (391)
++|++..+|++| -+|++++|+||||||||||+++|+|+ .|++|+|.. ..+.. +.. .
T Consensus 8 k~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-------------~p~~G~I~~--~~~~~-~~~-----~ 63 (208)
T 3b85_A 8 KTLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-------------ALQSKQVSR--IILTR-PAV-----E 63 (208)
T ss_dssp CSHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-------------HHHTTSCSE--EEEEE-CSC-----C
T ss_pred CCHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-------------CCcCCeeee--EEecC-Cch-----h
Confidence 467777788886 37999999999999999999999997 367788842 11211 100 0
Q ss_pred eeeeEEEEeccCCCcccCCc-ccchH---HHHh-CChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHHH
Q 016339 222 TTRHVSLLPLSGGGYLADTP-GFNQP---SLLK-VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWER 296 (391)
Q Consensus 222 ttr~i~~v~~~~~~~l~Dtp-g~~~~---~l~~-~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~~ 296 (391)
..+.++++++.. .++- .+... .+.. .....+ . ++-.. +.||+||++||+|+ +.+|+++|+|+|..
T Consensus 64 ~~~~ig~v~q~~----~enl~~~~~~~~~~~~~~~~~~~~-~---~~l~~-glGq~qrv~lAraL-~~~p~lllLDEPts 133 (208)
T 3b85_A 64 AGEKLGFLPGTL----NEKIDPYLRPLHDALRDMVEPEVI-P---KLMEA-GIVEVAPLAYMRGR-TLNDAFVILDEAQN 133 (208)
T ss_dssp TTCCCCSSCC----------CTTTHHHHHHHTTTSCTTHH-H---HHHHT-TSEEEEEGGGGTTC-CBCSEEEEECSGGG
T ss_pred hhcceEEecCCH----HHHHHHHHHHHHHHHHHhccHHHH-H---HHHHh-CCchHHHHHHHHHH-hcCCCEEEEeCCcc
Confidence 123455555542 1111 01000 0111 111111 1 11112 44999999999999 99999999996653
Q ss_pred --HHHHHHHHHH
Q 016339 297 --YQYYFQLLDE 306 (391)
Q Consensus 297 --~~~~~~ll~e 306 (391)
...+.++|.+
T Consensus 134 ~~~~~l~~~l~~ 145 (208)
T 3b85_A 134 TTPAQMKMFLTR 145 (208)
T ss_dssp CCHHHHHHHHTT
T ss_pred ccHHHHHHHHHH
Confidence 3344444444
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.1e-15 Score=154.29 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=85.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-c-ceecCc---cccccccccCCCcce---
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFEDQ---RVGEVSTKSGRGKHT--- 222 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~-I~~~g~---~v~~v~~~~~~~~~t--- 222 (391)
++++.+ +|++++|+||||||||||+++|+|+. .|++| + |++++. .++.+++......+.
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~------------~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~ 197 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA------------LKFNAYQPLYINLDPQQPIFTVPGCISATPISDIL 197 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT------------HHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc------------cccCCceeEEEcCCccCCeeeeccchhhccccccc
Confidence 799999 89999999999999999999999999 89999 8 999872 233444432111100
Q ss_pred e--eeEEEEeccC-CCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc--cccCCCcE----EEecC
Q 016339 223 T--RHVSLLPLSG-GGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC--LHLGEPGC----VVKGD 293 (391)
Q Consensus 223 t--r~i~~v~~~~-~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara--lh~~eP~~----lllDD 293 (391)
+ .++ + .... .+ ..........+..+++....+ +. .|||||+||+++|++ + +.+|++ +|+|.
T Consensus 198 tv~eni-~-~~~~~~~--~~~~~~~~~ll~~~gl~~~~~--~~---~LSgGq~qrlalAra~rL-~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 198 DAQLPT-W-GQSLTSG--ATLLHNKQPMVKNFGLERINE--NK---DLYLECISQLGQVVGQRL-HLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTTCTT-C-SCBCBSS--CCSSCCBCCEECCCCSSSGGG--CH---HHHHHHHHHHHHHHHHHH-HHCHHHHHSCEEEEC
T ss_pred chhhhh-c-ccccccC--cchHHHHHHHHHHhCCCcccc--hh---hhhHHHHHHHHHHHHHHh-ccCcccCcceEEEeC
Confidence 0 011 0 0000 00 000011222334455554444 55 899999999999999 9 999999 99995
Q ss_pred -HHH-----HHHHHHHHHH
Q 016339 294 -WER-----YQYYFQLLDE 306 (391)
Q Consensus 294 -~~~-----~~~~~~ll~e 306 (391)
|.. +..+.+++++
T Consensus 268 pPts~LD~~~~~l~~l~~~ 286 (460)
T 2npi_A 268 PSISQLDENLAELHHIIEK 286 (460)
T ss_dssp CCGGGSCSSCHHHHHHHHH
T ss_pred CcccccChhHHHHHHHHHH
Confidence 322 4445555444
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.48 E-value=2.3e-15 Score=160.74 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=43.2
Q ss_pred hhchhHHhhcCcccccccccccccccCCC---cEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEP---GCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~eP---~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+.+|. .|||||+||++||||+ +.+| +++|+| |+.....+++++.++++.
T Consensus 538 ~~~~~---~LSgG~~qrv~iAraL-~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 538 GQPAT---TLSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp TCCGG---GCCHHHHHHHHHHHHH-HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCch---hCCHHHHHHHHHHHHH-hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45666 9999999999999999 8776 599999 889999999999999754
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.47 E-value=6.6e-15 Score=142.97 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=80.2
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
+.+++++++|+ ..+|+++++.+ +|++++|+||||||||||+++|+|++ +|+|.. .++
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---------------~G~I~~------~v~ 159 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---------------GGSVLS------FAN 159 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---------------TCEEEC------GGG
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---------------CceEEE------Eec
Confidence 34567777887 67999999999 89999999999999999999999985 455533 233
Q ss_pred cccCCCccee--eeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEe
Q 016339 214 TKSGRGKHTT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (391)
Q Consensus 214 ~~~~~~~~tt--r~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lll 291 (391)
+.+..+..+. .++.+.+.. +.. ....+..+ +....+ + ..|||||||| |||+ +.+|+++|.
T Consensus 160 q~~~lf~~ti~~~ni~~~~~~-------~~~-~~~~i~~~-L~~gld--g---~~LSgGqkQR---ARAl-l~~p~iLlT 221 (305)
T 2v9p_A 160 HKSHFWLASLADTRAALVDDA-------THA-CWRYFDTY-LRNALD--G---YPVSIDRKHK---AAVQ-IKAPPLLVT 221 (305)
T ss_dssp TTSGGGGGGGTTCSCEEEEEE-------CHH-HHHHHHHT-TTGGGG--T---CCEECCCSSC---CCCE-ECCCCEEEE
T ss_pred CccccccccHHHHhhccCccc-------cHH-HHHHHHHH-hHccCC--c---cCcCHHHHHH---HHHH-hCCCCEEEE
Confidence 3222222221 244443210 000 11112221 111112 3 3899999999 9999 999999995
Q ss_pred c--CHHHHHHH
Q 016339 292 G--DWERYQYY 300 (391)
Q Consensus 292 D--D~~~~~~~ 300 (391)
- |+.....+
T Consensus 222 s~LD~~~~~~i 232 (305)
T 2v9p_A 222 SNIDVQAEDRY 232 (305)
T ss_dssp ESSCSTTCGGG
T ss_pred CCCCHHHHHHH
Confidence 3 55444443
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.46 E-value=2.2e-14 Score=140.75 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=82.6
Q ss_pred CeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
++++++ | ..+++++++.+ +|++++|+||||||||||+|+|+|++ +|++|.|.++|...-..+.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~------------~~~~g~i~i~~~~e~~~~~- 214 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI------------PKEERIISIEDTEEIVFKH- 214 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS------------CTTSCEEEEESSCCCCCSS-
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCcEEEECCeecccccc-
Confidence 445444 5 56899999999 89999999999999999999999999 8999999998864211110
Q ss_pred cCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCHH
Q 016339 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (391)
Q Consensus 216 ~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~~ 295 (391)
....+++++ .|||+||.++|+|+ ..+|+++++|++.
T Consensus 215 ------~~~~i~~~~-------------------------------------ggg~~~r~~la~aL-~~~p~ilildE~~ 250 (330)
T 2pt7_A 215 ------HKNYTQLFF-------------------------------------GGNITSADCLKSCL-RMRPDRIILGELR 250 (330)
T ss_dssp ------CSSEEEEEC-------------------------------------BTTBCHHHHHHHHT-TSCCSEEEECCCC
T ss_pred ------chhEEEEEe-------------------------------------CCChhHHHHHHHHh-hhCCCEEEEcCCC
Confidence 112233321 08999999999999 9999999999554
Q ss_pred HHHHHHHHHHHHH
Q 016339 296 RYQYYFQLLDEIR 308 (391)
Q Consensus 296 ~~~~~~~ll~el~ 308 (391)
. ....+++..+.
T Consensus 251 ~-~e~~~~l~~~~ 262 (330)
T 2pt7_A 251 S-SEAYDFYNVLC 262 (330)
T ss_dssp S-THHHHHHHHHH
T ss_pred h-HHHHHHHHHHh
Confidence 3 23445555543
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.44 E-value=5.7e-15 Score=131.04 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|||.+ +|++++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 467788 899999999999999999997654
No 73
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.42 E-value=2.3e-13 Score=135.50 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=103.4
Q ss_pred cccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCH----HHHHHHHH-HHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKS-RLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~----~~~~~~~~-~~~~~g~---~~v~~s 143 (391)
...+.|.++.|+.+..|..+ ...+.+++ .++++++|+||+||.+. +....|.. .++..|+ +.+.+|
T Consensus 68 ~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 68 IGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred hhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 34577888899988776422 12345553 37899999999999875 34556654 4677887 678889
Q ss_pred cCCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCC
Q 016339 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (391)
Q Consensus 144 ~~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~ 219 (391)
..++.+++.+...+ ++..++++|++|+|||||+|+|.+... .. .....++..
T Consensus 143 A~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~~------------~~--------~~~~~~~~~---- 198 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT------------GK--------GNVITTSYF---- 198 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHH------------HT--------TCCCEEEEC----
T ss_pred CCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhcc------------CC--------ccceeecCC----
Confidence 99999988887766 688999999999999999999998630 00 001122222
Q ss_pred cceeeeEEEEeccCCCcccCCcccchH
Q 016339 220 KHTTRHVSLLPLSGGGYLADTPGFNQP 246 (391)
Q Consensus 220 ~~ttr~i~~v~~~~~~~l~Dtpg~~~~ 246 (391)
+++|+....+....+..++||||+...
T Consensus 199 ~gtT~~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 199 PGTTLDMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp TTSSCEEEEEECSTTCEEEECCSCCCC
T ss_pred CCeEEeeEEEEeCCCeEEEeCCCcCcH
Confidence 337777777777666789999998754
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.42 E-value=1.8e-14 Score=144.35 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=38.6
Q ss_pred cCcccccccccccccccCCC--cEEEec------CHHHHHHHHHHHHHHH
Q 016339 267 LKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 267 LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~~~~~ll~el~ 308 (391)
|||||+||++||+++ +.+| +++|+| |+.....+.++|.++.
T Consensus 296 lSgGe~qrl~lA~~l-~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVST-VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHH-HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHH-HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999 9999 999999 7889999999999986
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.41 E-value=7.5e-15 Score=135.46 Aligned_cols=37 Identities=32% Similarity=0.301 Sum_probs=25.1
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...|++|||.+ +|++++|+||||||||||+++|+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999 89999999999999999999999976
No 76
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.41 E-value=3.1e-13 Score=134.54 Aligned_cols=160 Identities=23% Similarity=0.239 Sum_probs=106.0
Q ss_pred cccccceeEEEEEecCCCCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCHH----HHHHHHH-HHHhcCC---eeEEEE
Q 016339 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~-~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~----~~~~~~~-~~~~~g~---~~v~~s 143 (391)
...+.|.+++|+.+..|... ...+.+++ .++++++|+||+||.+.. ....|.. .++..|+ +.+.+|
T Consensus 66 i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 66 IGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp HHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 44577899999998765211 01233332 478999999999998753 4556643 3567888 678889
Q ss_pred cCCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCC
Q 016339 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (391)
Q Consensus 144 ~~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~ 219 (391)
..++.+++.+...+ ++..++++|.+|+|||||+|.|.|.... .. .....++ ..
T Consensus 141 A~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~~-----------~~--------~~~~~~~----~~ 197 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSD-----------ET--------ENVITTS----HF 197 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHTT-----------SC--------SSCCEEE----CC
T ss_pred CCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhcc-----------cc--------ccceecC----CC
Confidence 99999998887766 6889999999999999999999986410 00 0011222 33
Q ss_pred cceeeeEEEEeccCCCcccCCcccchHH--HHhCChhHHhhhc
Q 016339 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (391)
Q Consensus 220 ~~ttr~i~~v~~~~~~~l~Dtpg~~~~~--l~~~~~~~l~~~~ 260 (391)
+++|++...+....+..++||||+.... ...+..+.+...+
T Consensus 198 ~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 198 PGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp C----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred CCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 4478777777777677899999997543 2234444444433
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.40 E-value=4.4e-15 Score=144.73 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=67.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCccee-eeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-RHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~tt-r~i~~v~~~~~~~ 236 (391)
+|++++|+||||||||||+++|+|++ .|+.|. ..++.+++.....+++. .++.++ .
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll------------~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~--~---- 145 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL------------ARWDHH-----PRVDLVTTDGFLYPNAELQRRNLM--H---- 145 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH------------HTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCT--T----
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc------------cccCCC-----CeEEEEecCccCCcccHHHHHHHH--H----
Confidence 79999999999999999999999998 665553 23445555433222211 111110 0
Q ss_pred ccCCcccc-----hHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH
Q 016339 237 LADTPGFN-----QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (391)
Q Consensus 237 l~Dtpg~~-----~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~ 294 (391)
..+.|... ...+..++ ....+..+. .|||||+||+++|+++ +.+|+++|+|.|
T Consensus 146 ~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~---~lS~G~~qRv~~a~al-~~~p~ilIlDep 203 (312)
T 3aez_A 146 RKGFPESYNRRALMRFVTSVK-SGSDYACAP---VYSHLHYDIIPGAEQV-VRHPDILILEGL 203 (312)
T ss_dssp CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEE---EEETTTTEEEEEEEEE-ECSCSEEEEECT
T ss_pred hcCCChHHHHHHHHHHHHHhC-CCcccCCcc---cCChhhhhhhhhHHHh-ccCCCEEEECCc
Confidence 01112111 11122222 111223333 8999999999999999 999999999944
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.36 E-value=5.7e-14 Score=125.95 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=66.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dt 240 (391)
.++|+||||||||||+++|+|++ . +.++|........ +...+.++++++.... .++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l------------~-----i~~~g~~~~~~~~-----~~~~~~ig~~~~~~~~--~~~ 57 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL------------G-----KRAIGFWTEEVRD-----PETKKRTGFRIITTEG--KKK 57 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------------G-----GGEEEEEEEEEC-----------CCEEEEEETTC--CEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------------C-----CcCCCEEhhhhcc-----ccccceeEEEeecCcH--HHH
Confidence 68999999999999999999987 2 3444433211110 0012334555544211 000
Q ss_pred cccchHHHHhCChhHHhhhchhHHhhcCcccccccccccc-----cccCCCcEEEecC--------HHHHHHHHHHHH
Q 016339 241 PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC-----LHLGEPGCVVKGD--------WERYQYYFQLLD 305 (391)
Q Consensus 241 pg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iara-----lh~~eP~~lllDD--------~~~~~~~~~ll~ 305 (391)
. +.. + ........+.++. .|||||+||++||++ + ..+|+++|+|+ +.....+.+++.
T Consensus 58 ~-~~~--~-~~~~~~~~~~~~~---~lSgG~~qr~~la~aa~~~~l-~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 58 I-FSS--K-FFTSKKLVGSYGV---NVQYFEELAIPILERAYREAK-KDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp E-EEE--T-TCCCSSEETTEEE---CHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred H-HHh--h-cCCcccccccccc---CcCHHHHHHHHHHhhcccccc-ccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 000 0 0000123445555 899999999999996 8 99999999994 445555555543
No 79
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.30 E-value=4.6e-13 Score=129.61 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=51.9
Q ss_pred eeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcC-CCCCCcccccCccCCCCCcceecCcccccccccc
Q 016339 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (391)
Q Consensus 138 ~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl-~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~ 216 (391)
.+++++|++..++++++|.+ +|+||||||||||||+|.|. . .|++| +.++|.++....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-----~lvG~nG~GKSTLl~~L~g~~~------------~~~~g-i~~~g~~~~~t~--- 60 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-----MVVGESGLGKSTLINSLFLTDL------------YPERV-ISGAAEKIERTV--- 60 (301)
T ss_dssp ----------------CEEE-----EEEEETTSSHHHHHHHHHC------------------------------------
T ss_pred CCCcceECCEEEEcCCCEEE-----EEECCCCCCHHHHHHHHhCCCc------------cCCCC-cccCCcccCCcc---
Confidence 35677888889999999877 99999999999999999997 5 77888 776665442110
Q ss_pred CCCcceeeeEEEEeccCC----CcccCCcccchHHH--HhC-C----hhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 217 GRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL--LKV-T----KQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 217 ~~~~~ttr~i~~v~~~~~----~~l~Dtpg~~~~~l--~~~-~----~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
. ...+.++++..+ ..+.|++|+....- ... . +.+..+.++. .+|||++||+.+|+++ +
T Consensus 61 ~-----~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~---~~sgg~rqrv~~ara~-~-- 129 (301)
T 2qnr_A 61 Q-----IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLH---DESGLNRRHIIDNRVH-C-- 129 (301)
T ss_dssp ---------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHH---HHTSSCCTTCCCCCCC-E--
T ss_pred e-----EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH---HhCHHhhhhhhhhhhh-h--
Confidence 0 112233333221 23667777632110 000 0 1122234444 8999999999999987 3
Q ss_pred CcEEEecCH
Q 016339 286 PGCVVKGDW 294 (391)
Q Consensus 286 P~~lllDD~ 294 (391)
|+++|+|
T Consensus 130 --ll~ldeP 136 (301)
T 2qnr_A 130 --CFYFISP 136 (301)
T ss_dssp --EEEEECS
T ss_pred --eeeeecC
Confidence 7777743
No 80
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.30 E-value=5.6e-12 Score=127.98 Aligned_cols=110 Identities=28% Similarity=0.379 Sum_probs=79.8
Q ss_pred ccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCCc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESK 147 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~~ 147 (391)
....+.++|.+++|+.+..+.. ....+.++| +..++++++|+||+|+........+ ..+.++|+ +.+.+|..++
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~~~~~-~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFEREVK-PELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHHHHTH-HHHGGGSSCSCEECBTTTT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccHHHHH-HHHHhcCCCCEEEEeccCC
Confidence 3456789999999999876422 223455555 4468999999999999643111111 34557888 7889999998
Q ss_pred cchHHHhhcc-------c-C----------CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-------R-D----------QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-------~-G----------e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++-..+ . . -.++|+|+||||||||+|.|+|..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 8887765443 1 1 179999999999999999999985
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.28 E-value=7e-14 Score=135.63 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=80.0
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcce-eeeEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT-TRHVS 227 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~t-tr~i~ 227 (391)
++.+++.+ +|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+. ..++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l------------~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~ 157 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL------------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE 157 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH------------HHcCCeEEEEeecccchhHHHHHHHHHHhcCce
Confidence 34577777 79999999999999999999999998 889999999987764322100000001 13466
Q ss_pred EEeccCC-Cc----ccCCc------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEec
Q 016339 228 LLPLSGG-GY----LADTP------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (391)
Q Consensus 228 ~v~~~~~-~~----l~Dtp------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD 292 (391)
++++..+ .. +.++- +.....+..+++....+.++. +|| +||+++|+++ ..+|. ++|+|
T Consensus 158 ~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~---eLS---kqr~~iaral-~~~P~e~lLvLD 228 (302)
T 3b9q_A 158 IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLME---ELI---ACKKAVGKIV-SGAPNEILLVLD 228 (302)
T ss_dssp EECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHH---HHH---HHHHHHHTTS-TTCCSEEEEEEE
T ss_pred EEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHH---HHH---HHHHHHHHhh-ccCCCeeEEEEe
Confidence 6666533 21 00110 000011222333333445555 888 8999999999 99999 99999
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.24 E-value=1e-11 Score=136.08 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=39.6
Q ss_pred hcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||++| +.+ |.++|+| |+.....++++|.++...
T Consensus 805 ~LSGGErQRV~LAraL-~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~ 857 (916)
T 3pih_A 805 TLSGGEAQRIKLASEL-RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857 (916)
T ss_dssp TCCHHHHHHHHHHHHH-TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 765 5799999 889999999999998754
No 83
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.23 E-value=3e-12 Score=139.22 Aligned_cols=49 Identities=10% Similarity=-0.055 Sum_probs=42.8
Q ss_pred hhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 258 QTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 258 ~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+..+. .|||||+||++||+++ +.+ |+++|+| |+.....++++|.++...
T Consensus 725 ~~~~~---~LSGGekQRv~LAraL-~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 725 GQPAT---ELSGGEAQRIKLATEL-RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp TCCGG---GCCHHHHHHHHHHHTT-SSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCcc---cCCHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 44555 9999999999999999 775 7999999 889999999999998754
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.22 E-value=2.9e-12 Score=133.01 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=97.0
Q ss_pred EEEEcCCccchHHHhh-cc-cCCEEEEEecCCCcHHHHHHH--HhcCCCCCCcccccCccCCCCCcceecCcccc-----
Q 016339 140 LFCSVESKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVG----- 210 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~--L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~----- 210 (391)
+........+|++|++ .+ +|++++|+||||||||||+++ +.|+. .|.+|.|++++.+..
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~------------~~~~g~i~v~g~~~~~~~~~ 85 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------------EFDEPGVFVTFEETPQDIIK 85 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------------HHCCCEEEEESSSCHHHHHH
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------------hCCCCEEEEEEeCCHHHHHH
Confidence 3334456789999999 99 999999999999999999999 67988 788999999886531
Q ss_pred ------ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccC
Q 016339 211 ------EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (391)
Q Consensus 211 ------~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~ 284 (391)
.+++.+. ...++.++... +.+ .....+..+++.++.+..+. .||+||+|++.|+..+ ..
T Consensus 86 ~~~~~g~~~q~~~----~~~~l~~~~~~------~~~-~~~~~l~~~~l~~~~~~~~~---~LS~g~~~~lilDe~t-~~ 150 (525)
T 1tf7_A 86 NARSFGWDLAKLV----DEGKLFILDAS------PDP-EGQEVVGGFDLSALIERINY---AIQKYRARRVSIDSVT-SV 150 (525)
T ss_dssp HHGGGTCCHHHHH----HTTSEEEEECC------CCS-SCCSCCSSHHHHHHHHHHHH---HHHHHTCSEEEEECST-TT
T ss_pred HHHHcCCChHHhh----ccCcEEEEecC------ccc-chhhhhcccCHHHHHHHHHH---HHHHcCCCEEEECCHH-HH
Confidence 1111110 00112111110 001 11112233445566677777 9999999999999988 66
Q ss_pred CCcEEEecCHHHHHHHHHHHHHHHHH
Q 016339 285 EPGCVVKGDWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 285 eP~~lllDD~~~~~~~~~ll~el~~~ 310 (391)
.|. .-.|+.....+++++..+++.
T Consensus 151 ~~~--~~lD~~~~~~l~~ll~~l~~~ 174 (525)
T 1tf7_A 151 FQQ--YDASSVVRRELFRLVARLKQI 174 (525)
T ss_dssp STT--TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHC
Confidence 665 123688888999999999764
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.22 E-value=5.3e-12 Score=117.98 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=24.8
Q ss_pred EEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.++..+|+++||.+ +|++++|+||||||||||+++|+|+.
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566778999999999 89999999999999999999999975
No 86
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.22 E-value=1.3e-12 Score=142.83 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=43.0
Q ss_pred hhhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+..+. .|||||+||++||+++ +.+ |+++|+| |+.....++++|.++...
T Consensus 839 l~~~~~---~LSGGekQRv~LAraL-~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 839 LGQPAT---TLSGGEAQRVKLAAEL-HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp TTCCGG---GCCHHHHHHHHHHHHH-SSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCchh---hCCHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 345566 9999999999999999 765 5999999 889999999999998754
No 87
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.21 E-value=3.4e-12 Score=140.03 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=45.6
Q ss_pred hCChhH-HhhhchhHHhhcCcccccccccccccccCC---CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQS-LAQTFPEIKEMLKANEPAKCSFNNCLHLGE---PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~-l~~~~p~~~~~LSgGq~qr~~iaralh~~e---P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++.. ..+..+. .|||||+||++||+++ +.+ |+++|+| |+.....++++|.++...
T Consensus 849 ~lgL~~~~l~~~~~---~LSGGekQRv~LAraL-~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 915 (993)
T 2ygr_A 849 DVGLGYVRLGQPAP---TLSGGEAQRVKLASEL-QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915 (993)
T ss_dssp HTTGGGSBTTCCGG---GSCHHHHHHHHHHHHH-SSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCcccccCccc---cCCHHHHHHHHHHHHH-HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 344433 3345555 9999999999999999 765 5999999 889999999999998754
No 88
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.20 E-value=6e-13 Score=135.35 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCeeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCc---ccc
Q 016339 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVG 210 (391)
Q Consensus 136 g~~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~---~v~ 210 (391)
..++++++|+ +..+|+++ |.+ +|++++|+||||||||||+++|+|+. +|++|.|.+.|. ++.
T Consensus 133 ~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~------------~~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 133 QRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT------------RADVIVVGLIGERGREVK 199 (438)
T ss_dssp TSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHH
T ss_pred EEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEeceecHHHH
Confidence 4567788887 56799999 999 99999999999999999999999999 899999999998 454
Q ss_pred ccccccCCCcceeeeEEEEeccCCCc-----ccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCC
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~-----l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~e 285 (391)
.+...........+.+.++++..... ..++..+........+ ....... +....+|+|| ||+++| +.+
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-~~v~~~l-d~l~~lS~g~-qrvslA----l~~ 272 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-QHVLLIM-DSLTRYAMAQ-REIALA----IGE 272 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-CEEEEEE-ECHHHHHHHH-HHHHHH----TTC
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-CCHHHHH-HhHHHHHHHH-HHHHHH----hCC
Confidence 33221000011345678888742110 0000000000000000 0000001 1123789999 999999 578
Q ss_pred CcEEEec--CHHHHHHHHHHHHHHHH
Q 016339 286 PGCVVKG--DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 286 P~~lllD--D~~~~~~~~~ll~el~~ 309 (391)
|++ .. |+..+..+.++++++..
T Consensus 273 p~~--t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 273 PPA--TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp CCC--SSSCCTTHHHHHHHHHTTCSC
T ss_pred Ccc--cccCCHHHHHHHHHHHHHHHh
Confidence 876 33 88999999999988754
No 89
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=5.9e-12 Score=127.26 Aligned_cols=130 Identities=22% Similarity=0.185 Sum_probs=71.1
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccccccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~ 214 (391)
+++.+++++|++..++++++|.+ +|+||||||||||||+|+|.. .+..|. ++..+.. ..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g~~------------~~~~~~---~~~~~~~-~~ 70 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL-----MVVGESGLGKSTLINSLFLTD------------LYSPEY---PGPSHRI-KK 70 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE-----EEECCTTSSHHHHHHHHTTCC------------CCCCCC---CSCC------
T ss_pred EEEEecceeECCEEEecCCCEEE-----EEECCCCCcHHHHHHHHhCCC------------CCCCCC---CCcccCC-cc
Confidence 56788999999889999999887 999999999999999999987 333331 1111110 00
Q ss_pred ccCCCcceeeeEEEEeccCC----CcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc---
Q 016339 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--- 287 (391)
Q Consensus 215 ~~~~~~~ttr~i~~v~~~~~----~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--- 287 (391)
.. ....++++++..+ ..+.||+|+....-.......+.+. +...++.+++|+++||+++ +.+|.
T Consensus 71 t~-----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~---i~~~~~~~l~qr~~IaRal-~~d~~~~v 141 (418)
T 2qag_C 71 TV-----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY---IDSKFEDYLNAESRVNRRQ-MPDNRVQC 141 (418)
T ss_dssp CC-----EEEEEECC------CEEEEEEECC-----------CHHHHHH---HHHHHHHHTTTSCC-CCCC-CCCC-CCE
T ss_pred ce-----eeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHh-ccCCCeeE
Confidence 00 0122344443322 2367888875431100001122222 2235666778999999998 99999
Q ss_pred EEEecCH
Q 016339 288 CVVKGDW 294 (391)
Q Consensus 288 ~lllDD~ 294 (391)
|+++|+|
T Consensus 142 lL~ldeP 148 (418)
T 2qag_C 142 CLYFIAP 148 (418)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 8888854
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.18 E-value=4.5e-13 Score=132.92 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=80.0
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc-eeeeEEE
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSL 228 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~-ttr~i~~ 228 (391)
..+++.+ +|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+ ...++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l------------~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL------------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc------------cccCCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 3466777 79999999999999999999999998 88999999998776432110000000 1234667
Q ss_pred EeccCC-Ccc----cCCc------ccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEec
Q 016339 229 LPLSGG-GYL----ADTP------GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (391)
Q Consensus 229 v~~~~~-~~l----~Dtp------g~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllD 292 (391)
+++..+ ... .++- +.....+..+++....+.++. +|| +||+++|+++ ..+|. ++|+|
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~---eLS---kqr~~iaral-~~~P~e~lLvLD 285 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLME---ELI---ACKKAVGKIV-SGAPNEILLVLD 285 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHH---HHH---HHHHHHHHHS-TTCCSEEEEEEE
T ss_pred EEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHH---HHH---HHHHHHHHHH-hcCCCceEEEEc
Confidence 776543 210 0110 000011222333333445555 888 8999999999 99999 99999
No 91
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.16 E-value=1.1e-12 Score=116.92 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=60.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC---CCcceecCccccccc---cccCCCcceeeeEEEEeccC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS---TKSGRGKHTTRHVSLLPLSG 233 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~---~G~I~~~g~~v~~v~---~~~~~~~~ttr~i~~v~~~~ 233 (391)
++++|+|+||||||||+++|+|++ .|+ .|.|.+++.++..+. ....+.+...-.+.++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~------------~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL------------RERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH------------HHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------------hhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc
Confidence 579999999999999999999998 777 899999988754432 11100000000022333321
Q ss_pred CCcccCCcccchHHHHhCChhHHhhh-chh----HHhhcCcccccccccccccccCCCcE
Q 016339 234 GGYLADTPGFNQPSLLKVTKQSLAQT-FPE----IKEMLKANEPAKCSFNNCLHLGEPGC 288 (391)
Q Consensus 234 ~~~l~Dtpg~~~~~l~~~~~~~l~~~-~p~----~~~~LSgGq~qr~~iaralh~~eP~~ 288 (391)
-.++.+ + . ... ..++.++... +|. +.+.|||||+||+++||++ +.+|.+
T Consensus 71 ~~~i~~--~-~-~~~-~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARal-l~~p~i 124 (171)
T 2f1r_A 71 LAFIRR--V-S-EEE-GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKP-EEVEHF 124 (171)
T ss_dssp EEEEEE--C-C-HHH-HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSG-GGGGGG
T ss_pred EEEEec--C-C-hhh-hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecc-cCCCcc
Confidence 111111 0 0 111 1233333333 331 2236999999999999999 888765
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.15 E-value=5.4e-12 Score=114.19 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCccc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~ 238 (391)
|++++|+||||||||||+++|+|++ . ++| |.++|.++..+.. ..+.++++++...+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~------------~-~~G-i~~~g~~~~~~~~-------~~~~ig~~~~~~~g~~- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL------------K-SSG-VPVDGFYTEEVRQ-------GGRRIGFDVVTLSGTR- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH------------H-HTT-CCCEEEECCEEET-------TSSEEEEEEEETTSCE-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc------------c-cCC-EEEcCEecchhHh-------hhceEEEEEEecccce-
Confidence 6889999999999999999999998 7 889 9888876633221 2345667666543211
Q ss_pred CCcccchHHHHhC--ChhH-----HhhhchhHHhhcCccccccc-cccc---ccccCCCcEEEecC
Q 016339 239 DTPGFNQPSLLKV--TKQS-----LAQTFPEIKEMLKANEPAKC-SFNN---CLHLGEPGCVVKGD 293 (391)
Q Consensus 239 Dtpg~~~~~l~~~--~~~~-----l~~~~p~~~~~LSgGq~qr~-~iar---alh~~eP~~lllDD 293 (391)
.. +..+ ...+ ....+.. .+|+||++++ ++++ |+ ..+|+++|+|.
T Consensus 59 ---~~----l~~~~~~~~~~~~~~~v~~~~~---~ls~~er~~~~~l~~~a~A~-~~~~dvlilDE 113 (189)
T 2i3b_A 59 ---GP----LSRVGLEPPPGKRECRVGQYVV---DLTSFEQLALPVLRNADCSS-GPGQRVCVIDE 113 (189)
T ss_dssp ---EE----EEECCCCCCSSSCCEESSSSEE---CHHHHHTTTTTTTCCCCCCC-SSCCCCEEECC
T ss_pred ---eh----hhcccccCCccccccccceEEE---cchHHHHHHHHHHhhhhHhh-ccCCCEEEEeC
Confidence 00 0001 0000 1111122 5788888777 4454 56 88999999994
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.13 E-value=9.6e-12 Score=122.85 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=92.0
Q ss_pred eeEEEEcC-CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc
Q 016339 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (391)
Q Consensus 138 ~~v~~s~~-~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~ 215 (391)
+++.+.|+ +..+++++ |.+ +|++++|+||||||||||+++|+|+. .|+.|.+.+.|.+...+...
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~------------~~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA------------SADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCEEEEEEecccHHHHHHH
Confidence 55566776 56799999 999 99999999999999999999999999 89999998887653222111
Q ss_pred cC-CCc-ceeeeEEEEeccCCCcccCCcccch-HHHHhCChhHH-hh---------hchhHHhhcCcccccccccccccc
Q 016339 216 SG-RGK-HTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSL-AQ---------TFPEIKEMLKANEPAKCSFNNCLH 282 (391)
Q Consensus 216 ~~-~~~-~ttr~i~~v~~~~~~~l~Dtpg~~~-~~l~~~~~~~l-~~---------~~p~~~~~LSgGq~qr~~iaralh 282 (391)
.+ ... ...+.+.++++.. +.+.... ..+..+.+.+. .+ ..+. .||+|| |++++|
T Consensus 116 i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~---~lS~g~-r~v~la---- 182 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSD-----RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVT---RYARAA-RDVGLA---- 182 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTT-----SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH---HHHHHH-HHHHHH----
T ss_pred HHhhhhhhhhceEEEEECCC-----CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHH---HHHHHH-HHHHHH----
Confidence 00 000 0123344444321 1111110 01111111111 11 2233 789999 899999
Q ss_pred cCCCcEEEec--CHHHHHHHHHHHHHHHH
Q 016339 283 LGEPGCVVKG--DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 283 ~~eP~~lllD--D~~~~~~~~~ll~el~~ 309 (391)
+++|.+ .. |+..+..+.++++++..
T Consensus 183 l~~p~~--t~Gldp~~~~~l~~ller~~~ 209 (347)
T 2obl_A 183 SGEPDV--RGGFPPSVFSSLPKLLERAGP 209 (347)
T ss_dssp TTCCCC--BTTBCHHHHHHHHHHHTTCEE
T ss_pred cCCCCc--ccCCCHHHHHHHHHHHHHHhC
Confidence 467776 33 89999999999988753
No 94
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.12 E-value=3e-11 Score=122.46 Aligned_cols=110 Identities=24% Similarity=0.368 Sum_probs=77.4
Q ss_pred ccccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~ 145 (391)
.+....+.++|.+++|+.+..+.. ....+.++| +..++|+++|+||+|+.+... .. ..+.++|+ +.+.+|..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l---~~~~~pvilv~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRA--NI-YDFYSLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH---TTCCSCEEEEEECCCC-------CC-CSSGGGSSCCCEECBTT
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCccchh--hH-HHHHHcCCCCeEEEeCc
Confidence 344556789999999999876522 222334443 568999999999999976531 11 13446777 78899999
Q ss_pred CccchHHHhhcc----c---------C-CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i----~---------G-e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++++--.+ . + -.++|+|.+|||||||+|.|.|..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 988887765443 1 1 279999999999999999999875
No 95
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.11 E-value=2.4e-12 Score=124.90 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=76.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcc-eeeeEEEEeccCCCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLPLSGGGY 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~-ttr~i~~v~~~~~~~ 236 (391)
+|++++|+||||||||||++.|+|++ .|++|+|.+.+.++...........+ ...++.++++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll------------~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY------------QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH------------HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH------------HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC
Confidence 58999999999999999999999999 89999999999876432210000000 013456666654321
Q ss_pred ccCCc--ccchHHHH-----hCChhHHhhhchhHHhhcCcccccccccccccccCCCc--EEEecCHHHHHHHHHHHHHH
Q 016339 237 LADTP--GFNQPSLL-----KVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKGDWERYQYYFQLLDEI 307 (391)
Q Consensus 237 l~Dtp--g~~~~~l~-----~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~--~lllDD~~~~~~~~~ll~el 307 (391)
...+. .+...... .++.....+.......+|| +||+++||++ ..+|. ++++| +......++.+.++
T Consensus 169 p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal-~~~P~~~lLvLD-a~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 169 SAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELK---KVKRAIAKAD-PEEPKEVWLVLD-AVTGQNGLEQAKKF 243 (304)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHH---HHHHHHHHHC-TTCCSEEEEEEE-TTBCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHH---HHHHHHHHhh-cCCCCeEEEEEc-HHHHHHHHHHHHHH
Confidence 00000 00000000 0111111122222222555 7999999999 99999 44455 44444555556555
Q ss_pred HH
Q 016339 308 RI 309 (391)
Q Consensus 308 ~~ 309 (391)
.+
T Consensus 244 ~~ 245 (304)
T 1rj9_A 244 HE 245 (304)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.08 E-value=4e-11 Score=113.76 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=46.1
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-CCcceecCccccccc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVS 213 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-~G~I~~~g~~v~~v~ 213 (391)
.+|++++ + +|++++|+||||||||||+++|+|++ .|+ +|+|.++|.++..+.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~------------~~~~~G~I~~~g~~i~~~~ 68 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI------------NQTKSYHIITIEDPIEYVF 68 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH------------HHHCCCEEEEEESSCCSCC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC------------CCCCCCEEEEcCCcceeec
Confidence 4789998 6 89999999999999999999999998 887 999999887776554
No 97
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.07 E-value=1.2e-11 Score=108.92 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=48.2
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+|++..+++++||.+ +|++++|+||||||||||+++|+|+. |++|+|.++|..+.
T Consensus 16 ~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-------------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-------------GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-------------TCCSCCCCCTTTCE
T ss_pred HHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-------------CCCCeEEECCEeee
Confidence 455567899999999 89999999999999999999999985 57899999887764
No 98
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.05 E-value=4.2e-11 Score=118.93 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=39.3
Q ss_pred hcCccccccccccccccc------CCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL------GEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~------~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+||++||+|+ + .+|+++|+| |+.....+++++.++..
T Consensus 279 ~LSgGe~qr~~la~al-~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~ 333 (365)
T 3qf7_A 279 GLSGGERALISISLAM-SLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333 (365)
T ss_dssp GSCHHHHHHHHHHHHH-HHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHHHHHHH-HhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999 6 799999999 89999999999988754
No 99
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.00 E-value=7.3e-12 Score=113.99 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=25.4
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+ ..+ +|++++|+||||||||||+|+|+|+.
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555 466 89999999999999999999999987
No 100
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.97 E-value=1.1e-10 Score=105.01 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 136 g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++.++|+ ..++++ +.+ +|..++|+|+||||||||+|.|+|..
T Consensus 5 ~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 5 NYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466777776 367777 666 88999999999999999999999975
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.94 E-value=5.8e-10 Score=113.62 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=72.8
Q ss_pred cccccccccceeEEEEEecCCCC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeEEEEcCC
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVES 146 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~-~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v~~s~~~ 146 (391)
+....+.++|.+++|+....+.. ....+.++| +..++++++|+||+|+.+... .+ ..+..+|+ +.+.+|..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l---~~~~~pvilV~NK~D~~~~~~--~~-~e~~~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRA--NI-YDFYSLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHH---TTCCSCEEEEEECC------------CCSGGGSSSSEEECCTTT
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHH---HHcCCCEEEEEECccchhhhh--hH-HHHHHcCCCceEEeeccc
Confidence 34456789999999988765322 223334444 568999999999999975432 11 23446676 567888888
Q ss_pred ccchHHHhhcc--------------cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i--------------~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++++...+ ....++++|.+|+|||||+|.|.+..
T Consensus 169 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 88877765443 12468999999999999999999865
No 102
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.93 E-value=3.6e-10 Score=110.02 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=37.9
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.||+||+|+++||+++ + .+|+++|+| |+.....+.+++.++.
T Consensus 219 ~lS~Gq~q~v~ia~~l-~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 219 LLSGGEKALVGLALLF-ALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS 270 (322)
T ss_dssp GSCHHHHHHHHHHHHH-HHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHH-HHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999998 4 678999999 8889999999998874
No 103
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.92 E-value=1.2e-10 Score=117.64 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred EEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.++|+...+|+++ +.-+|++++|+||||||||||+++|+|+. .|++|+|.+.+.++
T Consensus 150 g~~~~~~~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l------------~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 150 GMTAHNHDNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL------------NSSERNILTVEDPI 205 (418)
T ss_dssp CCCHHHHHHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH------------CCTTSCEEEEESSC
T ss_pred CCCHHHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEEecccc
Confidence 3455555678887 44588999999999999999999999998 78889998877655
No 104
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.90 E-value=1.5e-09 Score=107.60 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCeeEEEE---cCC--ccch---------HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC
Q 016339 136 GYEPLFCS---VES--KLGL---------DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (391)
Q Consensus 136 g~~~v~~s---~~~--~~~L---------~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G 200 (391)
.|+++.++ |.. ..+| +++++.+ +|++++|+||||||||||+|+|+|++ +|++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~------------~~~~g 204 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI------------PFDQR 204 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS------------CTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC------------CCCce
Confidence 46777766 642 2344 9999999 89999999999999999999999999 89999
Q ss_pred cceecCc
Q 016339 201 SKWFEDQ 207 (391)
Q Consensus 201 ~I~~~g~ 207 (391)
.|.++|.
T Consensus 205 ~I~ie~~ 211 (361)
T 2gza_A 205 LITIEDV 211 (361)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 9999874
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.87 E-value=5.4e-10 Score=115.88 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=75.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCc--ceecCccccccccccCCCcceeeeEEEEeccCCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS--KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~--I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~ 235 (391)
+|++++|+||||||||||++.|+|.. .+. |. +++..++... . ...+. ...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~------------~~~-G~~vi~~~~ee~~~-----~----l~~~~----~~~-- 331 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA------------CAN-KERAILFAYEESRA-----Q----LLRNA----YSW-- 331 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH------------HTT-TCCEEEEESSSCHH-----H----HHHHH----HTT--
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH------------HhC-CCCEEEEEEeCCHH-----H----HHHHH----HHc--
Confidence 89999999999999999999999987 443 43 2333221100 0 00000 000
Q ss_pred cccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec-----CHH-----HHHHHHHHHH
Q 016339 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-----DWE-----RYQYYFQLLD 305 (391)
Q Consensus 236 ~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD-----D~~-----~~~~~~~ll~ 305 (391)
++....+...+...+.+..|. .||+||+|++.+|+++ ..+|+++|+| |.. ....+.+++.
T Consensus 332 ------g~~~~~~~~~g~~~~~~~~p~---~LS~g~~q~~~~a~~l-~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 332 ------GMDFEEMERQNLLKIVCAYPE---SAGLEDHLQIIKSEIN-DFKPARIAIDSLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp ------SCCHHHHHHTTSEEECCCCGG---GSCHHHHHHHHHHHHH-TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHhCCCEEEEEeccc---cCCHHHHHHHHHHHHH-hhCCCEEEEcChHHHHhhCChHHHHHHHHHHHH
Confidence 111111222333345566677 8999999999999999 9999999999 444 6667777777
Q ss_pred HHHHH
Q 016339 306 EIRIR 310 (391)
Q Consensus 306 el~~~ 310 (391)
.+++.
T Consensus 402 ~l~~~ 406 (525)
T 1tf7_A 402 YAKQE 406 (525)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77643
No 106
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.85 E-value=6.8e-10 Score=113.92 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=52.0
Q ss_pred EEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccc
Q 016339 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~ 213 (391)
.++..+..++++++|.+ + ++++|+||||||||||+++|+|+. .|++|+|.++|.++...+
T Consensus 11 ~l~~~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 11 SLTLINWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL------------IPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH------------CCCTTTCCCCCTTSCSCC
T ss_pred EEEEeccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEEcccCc
Confidence 34445567899999999 6 999999999999999999999999 999999999998875443
No 107
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=4e-09 Score=106.59 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.... +++|++.. ++++++.+ +|++ ++|+||||||||||||+|+|+.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33444 66787777 99999999 8999 9999999999999999999985
No 108
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.76 E-value=9.5e-10 Score=108.01 Aligned_cols=64 Identities=22% Similarity=0.085 Sum_probs=55.6
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
+..+.+.++|+...+++++++.+ +|++++|+||||||||||+|+|+|+. .|++|+|.+.+.++.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~------------~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL------------TAAGHKVAVLAVDPS 94 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEEEECGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh------------hhCCCEEEEEEEcCc
Confidence 44566777777778999999999 89999999999999999999999998 888999988876654
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.73 E-value=3.1e-10 Score=100.88 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=31.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+|++++|+||||||||||+++|++.. ..|.|.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~--------------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP--------------GVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS--------------SSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc--------------CCCeEEEcccch
Confidence 68999999999999999999999964 456777766554
No 110
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.73 E-value=2.6e-10 Score=108.78 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=68.8
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc------------
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG------------ 210 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~------------ 210 (391)
+.+..+++++++.+ +| ++|+||||||||||+++|+|.. .+ |.+.++|.++.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~------------~~--~~i~i~g~~l~~~~~~~~~~~i~ 93 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES------------GL--NFISVKGPELLNMYVGESERAVR 93 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT------------TC--EEEEEETTTTCSSTTHHHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc------------CC--CEEEEEcHHHHhhhhhHHHHHHH
Confidence 44566889999988 55 9999999999999999999987 33 45666665442
Q ss_pred ccccccCCCcceeeeEEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEE
Q 016339 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (391)
Q Consensus 211 ~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~l 289 (391)
.+++... .....+.++. +.. .+....+ .... -....+.+.++. .|||||+|+..|+.|+ .+.|+++
T Consensus 94 ~vf~~a~---~~~p~i~~~D-eid-~~~~~r~--~~~~--~~~~~~~~~~l~---~Lsgg~~~~~~i~ia~-tn~p~~L 159 (274)
T 2x8a_A 94 QVFQRAK---NSAPCVIFFD-EVD-ALCPRRS--DRET--GASVRVVNQLLT---EMDGLEARQQVFIMAA-TNRPDII 159 (274)
T ss_dssp HHHHHHH---HTCSEEEEEE-TCT-TTCC-------------CTTHHHHHHH---HHHTCCSTTCEEEEEE-ESCGGGS
T ss_pred HHHHHHH---hcCCCeEeee-hhh-hhhcccC--CCcc--hHHHHHHHHHHH---hhhcccccCCEEEEee-cCChhhC
Confidence 1111100 0001121111 111 1110000 0000 011234455555 9999999999999999 9999864
No 111
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.71 E-value=1.1e-08 Score=108.08 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=66.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC-CCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p-~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~D 239 (391)
.++|+||||||||||+++|+|+. .| ++|.|+++|.++....... .....+.++++++....+ +
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~------------~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~l~--~ 110 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA------------LPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYEIEIS--D 110 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------------------CCCSCEEEEEEECSS--SSCCEEEESCC---CCCC--C
T ss_pred eEEEECCCCChHHHHHHHHhCCC------------CCCCCCeEEEcCEEEEEecCCc--cccceeEEeeecccccCC--C
Confidence 49999999999999999999998 78 7999999998864332211 112345666666553221 1
Q ss_pred CcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEecCH------------HHHHHHHHHHHHH
Q 016339 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------------ERYQYYFQLLDEI 307 (391)
Q Consensus 240 tpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllDD~------------~~~~~~~~ll~el 307 (391)
. ..+.. .+......+.. .-.+...+.+.++.+. .+.|+++++|.| .....+.+++.++
T Consensus 111 ~-----~tv~e-~i~~~~~~~~~---~~~~~s~~~i~l~i~~-~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 111 A-----SEVEK-EINKAQNAIAG---EGMGISHELITLEISS-RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp H-----HHHHT-THHHHHHHHHC---SSSCCCSCCEEEEEEE-SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred H-----HHHHH-HHHHHHHHhcC---CccccchHHHHHHhcC-CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 0 01100 01111111111 1122334666777777 788999999944 4466777777775
No 112
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.70 E-value=1.2e-09 Score=110.35 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=66.8
Q ss_pred hHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEE
Q 016339 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (391)
Q Consensus 150 L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~ 228 (391)
-++|++++ .|..++|+|+||||||||||+|++... .+.+..... ...++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------------------~i~~~~ftT----------l~p~~G~ 198 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------------------KIAPYPFTT----------LSPNLGV 198 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------------------EECCCTTCS----------SCCEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------------------cccCcccce----------ecceeeE
Confidence 35777888 689999999999999999999999851 011111000 0112333
Q ss_pred EeccC--CCcccCCcccchH----------HHHhCC-hhHHhhhc---hhHHhhcCcccccccccccccccCCCcEEEec
Q 016339 229 LPLSG--GGYLADTPGFNQP----------SLLKVT-KQSLAQTF---PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (391)
Q Consensus 229 v~~~~--~~~l~Dtpg~~~~----------~l~~~~-~~~l~~~~---p~~~~~LSgGq~qr~~iaralh~~eP~~lllD 292 (391)
+.+.. ...+.|+|++... .+.... ...++..+ ......+|+|++|++++++++ ...|.++|+.
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVlN 277 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALN 277 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEE
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEE
Confidence 33321 1235566665221 111000 00011000 122237999999999999999 8999999986
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.70 E-value=6.1e-10 Score=100.82 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999987
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.69 E-value=4.3e-10 Score=111.22 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=37.0
Q ss_pred HHHhhcc-c--CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCC----Ccceec
Q 016339 151 DSLLQRL-R--DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (391)
Q Consensus 151 ~~ls~~i-~--Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~----G~I~~~ 205 (391)
+.|++.+ + |+.++|+||||||||||+++|+|++ .|++ |+++++
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~------------~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF------------NTTSAWEYGREFVF 208 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT------------TCEEECCTTHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh------------CCCcchhhHHHHHH
Confidence 3455666 6 9999999999999999999999999 7888 888764
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.63 E-value=2.3e-10 Score=104.02 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=25.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999998
No 116
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.63 E-value=3.3e-08 Score=96.82 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.8
Q ss_pred hcCccccc------ccccccccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPA------KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 266 ~LSgGq~q------r~~iaralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.|||||+| ++++|+++ +.+|+++|+| |+.....+.++|.++..
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l-~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYLK 302 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHT-TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 79999999 66788888 8999999999 88999999999988753
No 117
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.62 E-value=5e-09 Score=115.04 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=68.4
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeee
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~ 225 (391)
..++++++|.+ +|++++|+|||||||||||++|++... .+..| ..++.. ...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----------~aq~g---------~~vpa~-------~~~ 712 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----------MAQIG---------SYVPAE-------EAT 712 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----------HHHHT---------CCBSSS-------EEE
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----------HhhcC---------ccccch-------hhh
Confidence 45677888888 799999999999999999999986530 00000 011110 011
Q ss_pred EEEEeccCCCcccCCcccchHHHHhCChhHHhhhchhHHhhcCcccccccccccccccCCCcEEEec------CHHHHHH
Q 016339 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQY 299 (391)
Q Consensus 226 i~~v~~~~~~~l~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~~iaralh~~eP~~lllD------D~~~~~~ 299 (391)
+..+ + ..+..++..+....... .+|+||+|++.++++ +.+|.++|+| |+.....
T Consensus 713 i~~~---------d------~i~~~ig~~d~l~~~~s---tfs~em~~~~~il~~--a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 713 IGIV---------D------GIFTRMGAADNIYKGRS---TFMEELTDTAEIIRK--ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp EECC---------S------EEEEEC----------C---CHHHHHHHHHHHHHH--CCTTCEEEEESTTTTSCHHHHHH
T ss_pred hhHH---------H------HHHHhCChHHHHHHhHH---HhhHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHH
Confidence 1110 0 00111222222222223 678999999999887 5799999999 6765555
Q ss_pred HH-HHHHHHHH
Q 016339 300 YF-QLLDEIRI 309 (391)
Q Consensus 300 ~~-~ll~el~~ 309 (391)
+. .+++.+..
T Consensus 773 i~~~il~~L~~ 783 (918)
T 3thx_B 773 IAYATLEYFIR 783 (918)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54 77777754
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.59 E-value=2.2e-09 Score=104.40 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=36.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
++++|+|+||||||||||.|.|..... ..-...|+.|+|.++|..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~----~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGY----KIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCC----CEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCC----cEEEEEecCcccCccHHHHhC
Confidence 478999999999999999999985110 111225789999999877643
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.59 E-value=3.2e-09 Score=98.84 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh---cCCCCCCcccccCccCCCCCcceecCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFEDQ 207 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~---gl~~~~~~~~~~~~~~p~~G~I~~~g~ 207 (391)
++++++|+||||||||||+++|+ |+. .|+.|++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~------------~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ------------HLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC------------CEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe------------EecHHHHHHHHH
Confidence 57899999999999999999999 998 888898877653
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.56 E-value=3.6e-08 Score=90.75 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=28.4
Q ss_pred chHHHhh-cc-cCCEEEEEecCCCcHHHHHHHHh--cCC
Q 016339 149 GLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALR--SSP 183 (391)
Q Consensus 149 ~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~L~--gl~ 183 (391)
+|+.+.- -+ +|++++|+||||||||||+++|+ |..
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4555522 45 89999999999999999999999 653
No 121
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.56 E-value=1.1e-08 Score=100.91 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhc--CCeeEEEEcCCcc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKL 148 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~--g~~~v~~s~~~~~ 148 (391)
++..+++++++..+..-. ..+ .++..++.. ....++..++|||+|+.++...+.|..++..+ |......+.....
T Consensus 55 ~~~~~~l~~i~~~~~~l~-~~~-p~~~~l~~~-~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (357)
T 2e87_A 55 NVVRDNLRKVLERTPGLS-TLP-KFYQELVDV-LVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQ 131 (357)
T ss_dssp HHHHHHHHHHHHHSCCGG-GSC-HHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcc-cCC-HHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 345667777554433200 111 223322211 11345566899999999998888898877654 3322221211111
Q ss_pred chHHHh-------h----------------c--ccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLL-------Q----------------R--LRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls-------~----------------~--i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+. - . ...-.++|+|+||||||||+|.|++..
T Consensus 132 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 132 FYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 111111 0 0 134579999999999999999999875
No 122
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.54 E-value=6.9e-08 Score=95.51 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=25.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 77899999999999999999999998
No 123
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.53 E-value=4.3e-09 Score=102.79 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=49.7
Q ss_pred cCCeeEEEEcCCccchHHHhhcc-cC-------CEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i-~G-------e~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
+..+.+...|++..+++++++.+ .| +.++|+||||+|||||+++|++.... .+.+++|.+...+
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCH
Confidence 33445555678888999999988 33 78999999999999999999997521 0145678777665
Q ss_pred ccc
Q 016339 207 QRV 209 (391)
Q Consensus 207 ~~v 209 (391)
.++
T Consensus 91 ~~l 93 (334)
T 1in4_A 91 GDM 93 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 124
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.52 E-value=1.1e-08 Score=113.56 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=34.5
Q ss_pred EEEEc-CCccchHHHhhcc-c-------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 140 LFCSV-ESKLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 140 v~~s~-~~~~~L~~ls~~i-~-------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.| ++..++++++|.+ + |++++|+|||||||||||++| |+.
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 56666 5667899999998 4 799999999999999999999 886
No 125
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.52 E-value=1e-08 Score=99.12 Aligned_cols=58 Identities=17% Similarity=0.001 Sum_probs=46.5
Q ss_pred CeeEEEEcCCccchHHHhhcc--------------------cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccC
Q 016339 137 YEPLFCSVESKLGLDSLLQRL--------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i--------------------~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~ 196 (391)
++.+.+.| ..+++++++.+ +|++++|+||||||||||+++|+|+. .
T Consensus 40 ~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l------------~ 105 (308)
T 1sq5_A 40 LEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL------------S 105 (308)
T ss_dssp HHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH------------T
T ss_pred hHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH------------h
Confidence 34455555 35778888765 57899999999999999999999987 6
Q ss_pred --CCCCccee---cCcc
Q 016339 197 --PILGSKWF---EDQR 208 (391)
Q Consensus 197 --p~~G~I~~---~g~~ 208 (391)
|++|+|.+ +|..
T Consensus 106 ~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 106 RWPEHRRVELITTDGFL 122 (308)
T ss_dssp TSTTCCCEEEEEGGGGB
T ss_pred hCCCCCeEEEEecCCcc
Confidence 89999988 6654
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.45 E-value=6.1e-09 Score=98.68 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=33.0
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|....+++++++.+ +| ++|+||||||||||+++|++..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 44556789999988 56 9999999999999999999986
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.45 E-value=5.6e-08 Score=89.65 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=32.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCC--CCCcceecCc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQ 207 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p--~~G~I~~~g~ 207 (391)
+|++++|+||||||||||+++|+|+. +| ..|.|.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~------------~p~~~~g~v~~ttr 54 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ------------PLYDTQVSVSHTTR 54 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS------------CTTTEEECCCEECS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC------------CCCceEEEEEecCC
Confidence 79999999999999999999999998 54 5677766543
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.44 E-value=3.1e-08 Score=101.66 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++|.+ +|++++|+|+||||||||+++|+|++ .+++|+|.+.+.++
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll------------~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF------------EQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEECCCT
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHh------------hhcCCeEEEecCcc
Confidence 456666 79999999999999999999999998 88999999976655
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.42 E-value=7.5e-09 Score=96.50 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=32.9
Q ss_pred cCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|....+++++++.+ +| ++|+||||||||||+++|++..
T Consensus 35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 44456789999988 56 9999999999999999999976
No 130
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.41 E-value=2.2e-07 Score=97.93 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=37.9
Q ss_pred EcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-|+...+++.+++.+ .|+.++|+||||+|||||+++|+++.
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 367778899999999 89999999999999999999999998
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.41 E-value=1.2e-07 Score=98.10 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=43.5
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
.+++++++.+ .|+.++|+||||||||||+|+|+|+. +|++|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i------------~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI------------PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS------------CTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC------------CCCCCEEEEcCcc
Confidence 4577888888 89999999999999999999999999 8889999887754
No 132
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.40 E-value=1.3e-08 Score=94.59 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=38.5
Q ss_pred hcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccc-cCCCcc--eeeeEEEEec
Q 016339 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK-SGRGKH--TTRHVSLLPL 231 (391)
Q Consensus 155 ~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~-~~~~~~--ttr~i~~v~~ 231 (391)
+.+..++++|+||||||||||+++|+|+. .|++|+|.++|.++...+.. ....+| ...+++++++
T Consensus 23 ~~~~~~~~~i~GpnGsGKSTll~~i~g~~------------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 90 (227)
T 1qhl_A 23 FDLDELVTTLSGGNGAGKSTTMAAFVTAL------------IPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 90 (227)
T ss_dssp ECHHHHHHHHHSCCSHHHHHHHHHHHHHH------------SCCTTTC------------------CGGGBCSSEEEEEE
T ss_pred EEEcCcEEEEECCCCCCHHHHHHHHhccc------------ccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEE
Confidence 33423789999999999999999999999 89999999999887433221 011122 2356777775
Q ss_pred c
Q 016339 232 S 232 (391)
Q Consensus 232 ~ 232 (391)
.
T Consensus 91 ~ 91 (227)
T 1qhl_A 91 D 91 (227)
T ss_dssp E
T ss_pred e
Confidence 3
No 133
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.40 E-value=8e-08 Score=86.75 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999999976
No 134
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.39 E-value=7.7e-08 Score=105.86 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.8
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+++++++.+ +|++++|+|||||||||||++|++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667888888 699999999999999999999943
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.38 E-value=1.2e-07 Score=84.38 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=23.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|++++|+||||||||||+++|+|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999987
No 136
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.36 E-value=1e-07 Score=87.62 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=21.6
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHh-cCC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-SSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~-gl~ 183 (391)
+..+++||.+ +|++++|+||||||||||+++|+ |+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578899999 89999999999999999999999 986
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.36 E-value=2.8e-08 Score=95.63 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=24.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|+||||||||.+.|.+++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999987
No 138
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=1e-07 Score=85.85 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=43.1
Q ss_pred EEEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcc--eecCccc
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRV 209 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I--~~~g~~v 209 (391)
+..+++.....+..++.. +|++++|+||||||||||.++|++.+ . ..|.+ ++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l------------~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 5 IKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML------------Y-QKGKLCYILDGDNV 64 (200)
T ss_dssp -----CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH------------H-HTTCCEEEEEHHHH
T ss_pred CcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH------------H-hcCceEEEecCchh
Confidence 444556667778888777 89999999999999999999999987 4 56777 7766544
No 139
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.35 E-value=1.5e-07 Score=88.66 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=34.7
Q ss_pred cCCeeE-EEEc-CCccchHHHhhcc-c---CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v-~~s~-~~~~~L~~ls~~i-~---Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.++++ +++| +...+|++++|.+ + |++++|+|+|||||||+.++|++.+
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345677 8888 7778999999999 5 9999999999999999999999854
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.33 E-value=1e-07 Score=93.19 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=38.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~ 211 (391)
+|++++|+||||||||||++.|+|++ .|++|+|.+.+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l------------~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL------------KNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------HhcCCEEEEEeecccc
Confidence 69999999999999999999999998 8999999998887643
No 141
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.33 E-value=1e-07 Score=102.88 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.1
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..++++++|. |++++|+|||||||||||++|+|+.
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3456788888 9999999999999999999999975
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.31 E-value=4.4e-07 Score=89.33 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=30.7
Q ss_pred cchHHH-hhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSL-LQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~l-s~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..|+.+ ...+ +|++++|+||||||||||++.|++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456665 3556 89999999999999999999999976
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.31 E-value=2.8e-07 Score=83.61 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999965
No 144
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.30 E-value=2e-07 Score=83.32 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=24.9
Q ss_pred hcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 155 QRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 155 ~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+ +|++++|+||||||||||+++|+|+.
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 445 79999999999999999999999986
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.30 E-value=2.3e-07 Score=88.51 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=40.9
Q ss_pred ccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cceec
Q 016339 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFE 205 (391)
Q Consensus 147 ~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~~~ 205 (391)
..+|+++++.+ +|++++|+||||||||||++.|++.. .|.+| .+.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~------------~~~~G~~v~~~ 70 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW------------GTAMGKKVGLA 70 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH------------HHTSCCCEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH------------HHHcCCeEEEE
Confidence 35899999988 89999999999999999999999998 67767 66443
No 146
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.21 E-value=8.3e-07 Score=84.01 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999855
No 147
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.20 E-value=5.2e-07 Score=79.88 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999976
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.20 E-value=1.2e-06 Score=75.67 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=25.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||||+|||||+++|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999986
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.20 E-value=5e-07 Score=79.55 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=24.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++|+||||+|||||+++|++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999986
No 150
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.18 E-value=2.3e-06 Score=75.20 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=31.1
Q ss_pred Cccch--HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGL--DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L--~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+ +++++.+...+++|+||||||||||+.+|.+..
T Consensus 11 nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34455 667777744499999999999999999999987
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.16 E-value=3.7e-07 Score=88.40 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=56.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l 237 (391)
+|++++|+|||||||||++..|++.. .+..|++.+.+.++.... ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l------------~~~g~kV~lv~~D~~r~~--------a~-------------- 148 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF------------VDEGKSVVLAAADTFRAA--------AI-------------- 148 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEEECTTCHH--------HH--------------
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH------------HhcCCEEEEEccccccHH--------HH--------------
Confidence 68899999999999999999999988 566666665443321000 00
Q ss_pred cCCcccchHHHHhCChhHHhhhchhHHhhcCccccccc---ccccccccCCCcEEEecC
Q 016339 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC---SFNNCLHLGEPGCVVKGD 293 (391)
Q Consensus 238 ~Dtpg~~~~~l~~~~~~~l~~~~p~~~~~LSgGq~qr~---~iaralh~~eP~~lllDD 293 (391)
+ . ........++ ..++ ..|+|+.+++ ++++++ ..+|+++|+|.
T Consensus 149 -e--q-L~~~~~~~gl----~~~~----~~s~~~~~~v~~~al~~a~-~~~~dvvIiDt 194 (306)
T 1vma_A 149 -E--Q-LKIWGERVGA----TVIS----HSEGADPAAVAFDAVAHAL-ARNKDVVIIDT 194 (306)
T ss_dssp -H--H-HHHHHHHHTC----EEEC----CSTTCCHHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred -H--H-HHHHHHHcCC----cEEe----cCCccCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 0 0 0000111111 1112 4578888888 778887 88999999993
No 152
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.15 E-value=4.6e-07 Score=90.00 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=38.7
Q ss_pred chHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCC-CCcceecCccc
Q 016339 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (391)
Q Consensus 149 ~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~-~G~I~~~g~~v 209 (391)
.+++++ + +|++++|+||||||||||+++|+|++ .|+ +|.|.+.+..+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~------------~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI------------NQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHH------------HHHSCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcCCCcEEEEecccH
Confidence 566665 4 79999999999999999999999998 777 89886655433
No 153
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.13 E-value=4e-06 Score=75.37 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=29.3
Q ss_pred cchHHHhh-cc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+|+.+.. -+ +|++++|+||||||||||++.|++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677665 45 899999999999999999999998
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.13 E-value=5.4e-07 Score=86.74 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|+||||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999999975
No 155
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.10 E-value=5.5e-07 Score=97.73 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++++++.-+|++++|+|||||||||||++|+|+.
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3456667766468999999999999999999999974
No 156
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.10 E-value=6.5e-07 Score=83.82 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=35.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHh---cCCCCCCcccccCccCCCCCcce--------ecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~---gl~~~~~~~~~~~~~~p~~G~I~--------~~g~~v 209 (391)
+|++++|+|||||||||++++|+ |+. .+++|.++ ++|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~------------~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR------------LLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE------------EEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC------------cCCCCceehHhHHHHHHcCCCc
Confidence 68999999999999999999999 887 88999988 666655
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=9.2e-07 Score=79.97 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=38.9
Q ss_pred ccchHHHhh-cc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecC
Q 016339 147 KLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (391)
Q Consensus 147 ~~~L~~ls~-~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g 206 (391)
..+|+++.. -+ +|++++|+||||||||||++.|++.. .+..|.+.+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~------------~~~~~~v~~~~ 58 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG------------LRDGDPCIYVT 58 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH------------HHHTCCEEEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH------------HHCCCeEEEEE
Confidence 356788876 56 89999999999999999999999877 55666665543
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.7e-06 Score=77.26 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999987
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.05 E-value=2.1e-06 Score=77.93 Aligned_cols=26 Identities=46% Similarity=0.658 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 79999999999999999999999876
No 160
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.04 E-value=2.3e-06 Score=84.06 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred ccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+|+++++.++ .++|+|++|||||||||+|.|..
T Consensus 24 ~~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 24 SSALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp SCCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC
T ss_pred ccccccccccCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999887 89999999999999999999953
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.03 E-value=1.7e-06 Score=77.71 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=24.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||+++|++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999865
No 162
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=98.02 E-value=7.9e-07 Score=86.31 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=69.4
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchHHH
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~~l 153 (391)
.+|+|..++ .++ .+.+....+++|+. ...|.+|++|.+.++++-.+ ..++.+...+..+..+...+..+
T Consensus 53 ~Gn~E~~yL-~~L-~~e~~~~rler~l~-----~~~P~IIltrg~~~peelie----~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLL-PDEERKGRMRKLCR-----PETPAIIVTRDLEPPEELIE----AAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHS-CHHHHTTHHHHHCC-----TTCCCEEECTTCCCCHHHHH----HHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-Hhc-CHHHHHHHHHHHhc-----CCCCEEEEeCCCCCCHHHHH----HHHHCCCeEEEECCchhHHHHHH
Confidence 466676555 333 23344556777762 57788899999998775333 33445888887777666666666
Q ss_pred hhcc-----------------cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 154 LQRL-----------------RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 154 s~~i-----------------~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
...+ .|.-++|.|+||+|||||...|.+.
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5444 3889999999999999999999874
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.00 E-value=2.5e-06 Score=75.77 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|+|..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999986
No 164
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=2.6e-06 Score=76.40 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.3
Q ss_pred CccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 146 ~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
...++++|+|.+ +|++++|+|||||||||+.+.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345799999999 89999999999999999999999754
No 165
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.98 E-value=1.7e-06 Score=84.30 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=37.6
Q ss_pred EEEEcCCccchHHHhhcc-cCC------EEEEEecCCCcHHHHHHHHhcCC
Q 016339 140 LFCSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i-~Ge------~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+.|+...++.+++..+ .+. +++|+||||||||||+++|.++.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455677888999999888 333 89999999999999999999987
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.97 E-value=1.7e-06 Score=76.61 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
|++++|+||||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999986
No 167
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.91 E-value=2.9e-06 Score=76.37 Aligned_cols=40 Identities=23% Similarity=0.018 Sum_probs=33.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+|.+++|+|+||||||||++.|++.. .+..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~------------~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL------------REQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH------------HHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------hhcCCeEEEeccCc
Confidence 57899999999999999999999987 66677776655443
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.89 E-value=5.4e-06 Score=75.04 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=24.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+||||||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=1.7e-05 Score=76.77 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhc-CCCCCCcccccCccCCCCCcceecCccc
Q 016339 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRS-SPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 145 ~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~g-l~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
++..+++.+.-.+ ++..+.|.||||+|||||+++|++ +. .|..|.+.++|...
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~------------~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF------------GPGVYRLKIDVRQF 75 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS------------CTTCCC--------
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc------------CCCCCeEEecceee
Confidence 3444455554444 222399999999999999999999 66 78889998887654
No 170
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.85 E-value=7.5e-06 Score=81.85 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=36.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.|..++|+|+||||||||+|+|+|...............|+.|.+.+.|.++
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 6899999999999999999999994310111111112368889888877544
No 171
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=1.1e-05 Score=73.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|++++|+||||||||||++.|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999999993
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.82 E-value=6.2e-06 Score=73.34 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999975
No 173
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.81 E-value=6.4e-06 Score=71.81 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|||||||||+++.|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999998864
No 174
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.80 E-value=1.5e-05 Score=69.45 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|..++|+|+||||||||+|.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36689999999999999999999865
No 175
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.76 E-value=5.7e-06 Score=80.94 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=36.5
Q ss_pred EEEcCCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+...+++++++.. ++.+++|+|++|||||||+|.|++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 37 RHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33455566788999988 78999999999999999999999875
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.74 E-value=1.3e-05 Score=79.67 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred cchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++++.+ +|++++|+||||||||||+++|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999 89999999999999999999999865
No 177
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.71 E-value=3.1e-05 Score=67.51 Aligned_cols=24 Identities=50% Similarity=0.600 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999999864
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.69 E-value=2.3e-06 Score=82.22 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=39.1
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++++. +|++++|+|+|||||||++..|++.. .+..|++.+.+.++
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~------------~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHH------------HHTTCCEEEEECCS
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEecCCc
Confidence 567777 89999999999999999999999998 66777887766554
No 179
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.69 E-value=1.3e-05 Score=73.63 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|++++|+|+||||||||+++|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999986
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.68 E-value=9.8e-06 Score=79.61 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++|+|++|||||||+|.|+|..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999999976
No 181
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.66 E-value=1.7e-05 Score=68.76 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=23.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|.+++|+||||||||||.++|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999976
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.65 E-value=2.9e-06 Score=83.83 Aligned_cols=44 Identities=34% Similarity=0.401 Sum_probs=30.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+.++...|+...+++++++. ++|+|+||||||||+|.|.+..
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~-----I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEEC-----EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEeccchHHhCCeeecCCCCEE-----EEEEcCCCCCHHHHHHHHhCCC
Confidence 4555555556555555555544 4999999999999999998865
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.65 E-value=9.1e-05 Score=76.41 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.1
Q ss_pred Hhhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 153 ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+.+.+ ++..+.|+|++||||||+||.|..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 45556 678999999999999999999875
No 184
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.65 E-value=3.2e-05 Score=74.45 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++|||||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999865
No 185
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.64 E-value=3e-05 Score=74.55 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|.+|||||||+|.|.|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999865
No 186
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.64 E-value=1e-05 Score=84.39 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=34.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC-cce-ecCccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKW-FEDQRV 209 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G-~I~-~~g~~v 209 (391)
+|++++|+|+||||||||+++|++.+ .|++| .+. +++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L------------~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL------------MEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH------------HTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh------------cccCCceEEEECCcHH
Confidence 68999999999999999999999998 77776 674 666544
No 187
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.63 E-value=1.1e-05 Score=69.88 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=62.0
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.++.. .+........+++..+.+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 3444567899999999987642 222333333222 335789999999999964321 122223455678888899
Q ss_pred EcCCccchHHHhhcccCCEEEEEecCCCcHHH
Q 016339 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 143 s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKST 174 (391)
|..++.+++++-..+.......-|+.++||||
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 99888888887666622222223788999986
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.62 E-value=9.9e-06 Score=78.80 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=39.7
Q ss_pred HHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
.+++|.+ +|++++|+|+|||||||++..|++.. .+..|++.+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l------------~~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY------------AELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH------------HHTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEeCCC
Confidence 4666766 78999999999999999999999988 77778888766555
No 189
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=2e-05 Score=68.84 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=59.1
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..| .....+..++..... .++++++|+||+|+.+... .+........+++..+.+|
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 158 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRR-DTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEAS 158 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEec
Confidence 344567899999999998765 223334455544443 4678999999999954321 1222334456788888899
Q ss_pred cCCccchHHHhhcc-----cCCEEEEEecCCCcHHH
Q 016339 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 144 ~~~~~~L~~ls~~i-----~Ge~vaLvGpSGsGKST 174 (391)
..++.+++.+-..+ +....---+.+++||||
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 98888877665444 11111112445899997
No 190
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=3.1e-05 Score=71.10 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999999976
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.61 E-value=4.7e-06 Score=86.68 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=41.9
Q ss_pred cCCeeEEEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 135 ~g~~~v~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.+.+...|....++.++++.++|+.++|+||||||||||+++|++..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4556666666666788888888899999999999999999999999987
No 192
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.61 E-value=2.8e-05 Score=69.91 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 193
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.60 E-value=4.5e-05 Score=71.67 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999976
No 194
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.59 E-value=4.5e-05 Score=66.81 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999863
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=8.7e-06 Score=83.85 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=31.1
Q ss_pred CCccchHHHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+...++++++.+ +| +.|+||||+|||||+++|++..
T Consensus 51 ~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 51 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 3445677888888 55 9999999999999999999976
No 196
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.56 E-value=3.9e-05 Score=71.42 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||+|.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999875
No 197
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.56 E-value=2.1e-05 Score=77.73 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=38.4
Q ss_pred hcCccccccccccccccc---------CCCcEEEec------CHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL---------GEPGCVVKG------DWERYQYYFQLLDEIR 308 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~---------~eP~~lllD------D~~~~~~~~~ll~el~ 308 (391)
.||+||+|+++||+++ + .+|+++|+| |+.+...+++++.++.
T Consensus 265 ~lS~Gqqq~l~lA~~L-a~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 265 YASRGEGRTVALALRR-AELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP 321 (359)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS
T ss_pred hCCHHHHHHHHHHHHH-HHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC
Confidence 6999999999999999 8 899999999 8889999999988764
No 198
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.55 E-value=6.4e-05 Score=65.45 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 199
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=97.53 E-value=7.1e-05 Score=56.62 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=39.6
Q ss_pred EeccCC-CCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 5 VQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
|-.+-. +-+.... .+|..++|.++|+|++....+.|||+|.++..++.+..|.|+
T Consensus 12 Vi~~lg~~~y~V~~-~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 12 VLETLPNTMFRVEL-ENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp EEEECSSSEEEEEE-TTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEeCCcEEEEEE-CCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 333444 4444432 356789999999999888899999999998654456677765
No 200
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.52 E-value=2.5e-05 Score=75.07 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=24.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|||||||||+++.|++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999987
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=4.7e-05 Score=65.56 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=23.1
Q ss_pred hhcccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 154 LQRLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 154 s~~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.+...+++|+|||||||||++.+|.-
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444556899999999999999999873
No 202
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=97.48 E-value=7.4e-05 Score=57.64 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=42.3
Q ss_pred eEeccCCCCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
++..-|.+.+.+.- .+|..++|.++|++++.+..++|||+|.++..++...+|-|.
T Consensus 20 Vik~l~n~~f~V~l-~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 20 VVEPLPNAMFRIEL-ENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEETTTEEEEEE-TTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCEEEEEe-CCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 34444455444332 467789999999999988899999999999877777777665
No 203
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=97.48 E-value=4.3e-05 Score=63.52 Aligned_cols=48 Identities=31% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEEEeecccc
Q 016339 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (391)
Q Consensus 19 ~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~v~~R~~ 67 (391)
.+|..++|.++|+|++ ...+.|||+|.++..++.+..|.|+.+++|..
T Consensus 52 ~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 52 FDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp TTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred CCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 4578899999999998 78899999999998766777999999999863
No 204
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.45 E-value=5.6e-05 Score=67.25 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred cchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++++++..+.-.++|+|++|||||||+|.+.+..
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 578889888866679999999999999999998753
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.44 E-value=5.4e-05 Score=67.92 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+||||||||||.+.|+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999998765
No 206
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.44 E-value=9.8e-05 Score=69.22 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999875
No 207
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.42 E-value=0.00013 Score=68.94 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.42 E-value=7.4e-05 Score=66.95 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|+||||||||.+.|++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999999976
No 209
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.41 E-value=6.6e-05 Score=74.19 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|+||||||||+|.|+|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999976
No 210
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=97.41 E-value=5.9e-05 Score=57.07 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=39.9
Q ss_pred EeccCC-CCCcccCCCCCcEEEEEecccccccCCCceeCcEEEEceecccCceeEEE
Q 016339 5 VQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (391)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~c~~r~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (391)
|-.+-. +-+..+. .+|..++|.+||+|++.+..+.|||+|.++..++.+..|.|+
T Consensus 13 Vi~~lg~~~y~V~~-~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 13 VTEALPNATFRVKL-DSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CCCCCTTTBCCCEE-SSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEeCCcEEEEEE-CCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 334444 4455432 346778999999999888899999999999765556677664
No 211
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.40 E-value=7.2e-05 Score=64.30 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 212
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.40 E-value=0.00012 Score=68.82 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
No 213
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.38 E-value=0.00011 Score=68.95 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|++|+|||||+|.|.+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 214
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.38 E-value=9.9e-05 Score=72.99 Aligned_cols=49 Identities=35% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
|..++|+|.||||||||+|+|.+... ......-....|..|.+.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r 50 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPR 50 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcc
Confidence 45789999999999999999998531 00000011125666766665544
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.37 E-value=0.00013 Score=73.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHH--hcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINAL--RSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L--~gl~ 183 (391)
+|++++|+||||||||||++.| .+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 7999999999999999999955 4554
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.36 E-value=8.3e-05 Score=74.34 Aligned_cols=52 Identities=25% Similarity=0.204 Sum_probs=31.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcccc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~ 210 (391)
.+..++|+|+||||||||+|+|+|.... ..........|..|.+.+.+.++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-~~~~p~tTi~p~~g~v~v~~~r~~ 72 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS-AENFPFCTIDPNESRVPVPDERFD 72 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCccccCceeEEEEECCccce
Confidence 5778999999999999999999987310 000000112556676666554443
No 217
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.36 E-value=0.0001 Score=64.51 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=58.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+.... .........+++..+.+|.
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 344567999999999987642 22333444433333 37899999999999765311 1222344567889999999
Q ss_pred CCccchHHHhhcc----cCCEEEEEecCCCcHHH
Q 016339 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (391)
Q Consensus 145 ~~~~~L~~ls~~i----~Ge~vaLvGpSGsGKST 174 (391)
.++.+++.+-..+ ....----.++|++|||
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 8888888765554 11111223467788876
No 218
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.35 E-value=1.7e-05 Score=87.08 Aligned_cols=109 Identities=11% Similarity=-0.003 Sum_probs=70.0
Q ss_pred cCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCcccCCc---------ccchHHHHhCChhHH-hhhch
Q 016339 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP---------GFNQPSLLKVTKQSL-AQTFP 261 (391)
Q Consensus 192 ~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~l~Dtp---------g~~~~~l~~~~~~~l-~~~~p 261 (391)
...+.|..|.|.++|.++..+.... ...++.++. .......+.. ......+..+++..+ +++.+
T Consensus 389 g~rl~~~~~~V~i~G~~i~~~~~~~-----v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~ 462 (916)
T 3pih_A 389 GRRLNREALSVKINGLNIHEFTELS-----ISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSA 462 (916)
T ss_dssp SCCBCTTGGGEEETTEEHHHHHHSB-----HHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBG
T ss_pred cccCChHhcCcEECCccHHHhhhCC-----HHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCc
Confidence 3445899999999999886554321 112222211 1111111110 001123445565544 46667
Q ss_pred hHHhhcCcccccccccccccccCCCc--EEEec------CHHHHHHHHHHHHHHHHH
Q 016339 262 EIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 262 ~~~~~LSgGq~qr~~iaralh~~eP~--~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
. .|||||+||++||+++ ..+|+ ++|+| |+.....++++|++++..
T Consensus 463 ~---~LSGGe~QRv~LAraL-~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 463 T---TLSGGESQRIRLATQI-GSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp G---GCCHHHHHHHHHHHHH-HTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred c---cCCHHHHHHHHHHHHH-hhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 7 9999999999999999 88776 99999 788999999999998754
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.35 E-value=8.3e-05 Score=67.25 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=28.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCccee
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~ 204 (391)
+.+++|+|||||||||+.++|++.+. +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987541 11566777765
No 220
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.33 E-value=0.00017 Score=68.33 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 221
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.31 E-value=0.00016 Score=67.68 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999865
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.31 E-value=9.9e-05 Score=65.10 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=22.0
Q ss_pred chHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 149 ~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++++++..+.-.++|+|++|||||||+|.+.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 56778877766689999999999999999999754
No 223
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00011 Score=72.93 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.7
Q ss_pred hhcc--cC-CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 154 LQRL--RD-QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 154 s~~i--~G-e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|.+ .| -.++|||.++||||||+|+|.|..
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 34 379999999999999999999864
No 224
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.29 E-value=0.00011 Score=74.51 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999854
No 225
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.28 E-value=0.00019 Score=67.23 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999865
No 226
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.28 E-value=9.6e-05 Score=74.27 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.2
Q ss_pred cc-cCCEEEEEecCCCcHHHHHHHHhcCCCC
Q 016339 156 RL-RDQTTVIVGPSGVGKSSLINALRSSPHA 185 (391)
Q Consensus 156 ~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~~~ 185 (391)
.+ .|++++|+||||||||||+++|.++..+
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35 4899999999999999999999998743
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.28 E-value=0.00014 Score=76.33 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-+++|+|++|+|||||||.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999975
No 228
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.28 E-value=9.9e-06 Score=88.22 Aligned_cols=131 Identities=13% Similarity=-0.007 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCC---------ccc
Q 016339 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---------YLA 238 (391)
Q Consensus 168 SGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~---------~l~ 238 (391)
|..||+++.+.+.....+ .|....+.|.+|++.++|.++..+.... ....+.++...... .+.
T Consensus 271 ~~~~~~~~~~~~~~~~Cp---~C~G~Rl~~~~~~v~~~G~~I~~~~~~~-----v~e~~~~~~~~~~~~~~~~~~~~~~~ 342 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECP---LCHGKRLRQEALNVTFAGLDITELSRLP-----LARVSELLRPYAEEREPGHAERVKNR 342 (842)
T ss_dssp CHHHHHHHGGGCEEEECS---SSSSSCBCTTTTTCBBTTBCHHHHHHSB-----HHHHHHHHHHHHTTCSSCSTTSSSSC
T ss_pred CHHHHHHHHhhccccCCC---CCCCCccCHHHhhcccCCccHHHHhhcC-----HHHHHHHHHhhhhhhhhcccchhhcc
Confidence 556899998887764321 2334556889999999999886643321 11111111111000 000
Q ss_pred CC-cc----------cchHHHHhCChhHH-hhhchhHHhhcCcccccccccccccccCCC--cEEEec------CHHHHH
Q 016339 239 DT-PG----------FNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGEP--GCVVKG------DWERYQ 298 (391)
Q Consensus 239 Dt-pg----------~~~~~l~~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~eP--~~lllD------D~~~~~ 298 (391)
.. .. .+...+..+++..+ +++.+. .|||||+||++||++| ..+| .++|+| |+...+
T Consensus 343 ~~~~~i~~~i~~ei~~rl~~L~~vGL~~l~l~r~~~---tLSGGe~QRV~LA~aL-~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 343 PEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTP---TLSPGELQRLRLATQL-YSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCTTSBTTCBGG---GSCHHHHHHHHHHHHT-TTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCcC---cCCHHHHHHHHHHHHH-hhCCCCeEEEeeCccccCCHHHHH
Confidence 00 00 00112445566544 566666 9999999999999999 8888 499999 788889
Q ss_pred HHHHHHHHHHHH
Q 016339 299 YYFQLLDEIRIR 310 (391)
Q Consensus 299 ~~~~ll~el~~~ 310 (391)
.+++++++|+..
T Consensus 419 ~L~~~l~~L~~~ 430 (842)
T 2vf7_A 419 ALLSALENLKRG 430 (842)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
No 229
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.27 E-value=0.00018 Score=66.67 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 230
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.27 E-value=0.00017 Score=62.59 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999999864
No 231
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.27 E-value=0.0017 Score=56.62 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=59.4
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhC-----------CCCEEEEEeCCCCCCHH---HHHHHHH--H
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEE---VLNTWKS--R 131 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~-----------~~~~~lvlnK~Dl~~~~---~~~~~~~--~ 131 (391)
.+....+.++|.+++|+++..+ .....+..++...... ++++++|+||+|+.+.. +...... .
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 3444557899999999999865 3344455555444443 89999999999998763 2322211 1
Q ss_pred H-HhcCCeeEEEEcCCccchHHHhhcc
Q 016339 132 L-HTWGYEPLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 132 ~-~~~g~~~v~~s~~~~~~L~~ls~~i 157 (391)
+ ...++..+.+|..++.+++.+-..+
T Consensus 157 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 157 LMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp HHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 1 3456677888888888887765544
No 232
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.25 E-value=0.00016 Score=60.95 Aligned_cols=54 Identities=37% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++|+|++|||||||+|.+.+.. .......++ ++...........+. +
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 53 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR-------------------------SAVVADVPG----VTRDLKEGVVETDRGRFLL 53 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC-------------------------C---------------CCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-------------------------eeeccCCCC----ceecceEEEEEeCCceEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.|+||.
T Consensus 54 ~Dt~G~ 59 (161)
T 2dyk_A 54 VDTGGL 59 (161)
T ss_dssp EECGGG
T ss_pred EECCCC
No 233
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.25 E-value=0.00013 Score=63.80 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|.|++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 234
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.24 E-value=0.00013 Score=65.10 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+++|+|||||||||+.+.|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 235
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.21 E-value=0.00014 Score=63.56 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=24.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|++++|+|++||||||+.+.|++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999865
No 236
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=0.00016 Score=72.05 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=41.8
Q ss_pred hcCCeeEEEEcCC-ccchH--------------HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 134 TWGYEPLFCSVES-KLGLD--------------SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 134 ~~g~~~v~~s~~~-~~~L~--------------~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.|+++++.|.. ...++ |+++.+ +|+.++|+||||||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5678888888854 34666 777777 89999999999999999999998864
No 237
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.20 E-value=0.00017 Score=65.21 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=23.0
Q ss_pred hhcccCCEEEEEecCCCcHHHHHHHHhc
Q 016339 154 LQRLRDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 154 s~~i~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+.+...+++|+|||||||||++.+|.-
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3444556999999999999999999863
No 238
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.18 E-value=0.00016 Score=72.93 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.17 E-value=0.00017 Score=66.41 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=25.2
Q ss_pred ccchHHHhhcc----cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 147 KLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 147 ~~~L~~ls~~i----~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-|.++++.+ +|.+++|.|++||||||+++.|...+
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566667666 68999999999999999999999876
No 240
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.17 E-value=0.00011 Score=63.45 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=41.9
Q ss_pred hhhchhHHhhcCcccccccccc------cccccCCCcEEEec------CHHHHHHHHHHHHHHHH
Q 016339 257 AQTFPEIKEMLKANEPAKCSFN------NCLHLGEPGCVVKG------DWERYQYYFQLLDEIRI 309 (391)
Q Consensus 257 ~~~~p~~~~~LSgGq~qr~~ia------ralh~~eP~~lllD------D~~~~~~~~~ll~el~~ 309 (391)
.+..+. .|||||+||++|| +++ +.+|+++++| |+.....+.+++.++..
T Consensus 51 ~~~~~~---~LSgGe~qrv~lA~~Lalaral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 111 (148)
T 1f2t_B 51 KERPLT---FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYLK 111 (148)
T ss_dssp EEECGG---GSCHHHHHHHHHHHHHHHHHHH-HSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG
T ss_pred ccCChh---HCCHHHHHHHHHHhhhHHHHHH-cCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc
Confidence 345566 9999999999876 888 8999999999 88999999999988754
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=6.4e-05 Score=67.84 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|.+.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999877
No 242
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.15 E-value=0.00054 Score=60.67 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|.
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 163 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeC
Confidence 3445678999999999987642 23334445443333 3789999999999953211 11122233456888899999
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 164 ~~~~gi~~l~~~l 176 (213)
T 3cph_A 164 KNDDNVNEIFFTL 176 (213)
T ss_dssp TTTBSSHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888777665443
No 243
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00016 Score=69.96 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=36.0
Q ss_pred EcCCccchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 143 SVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 143 s~~~~~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++..+++.++..+ .|++ +.|.||+|+||||++++|++..
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467788999999988 6776 9999999999999999999875
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.14 E-value=2.3e-05 Score=75.32 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=35.3
Q ss_pred HhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCcc
Q 016339 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (391)
Q Consensus 153 ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~ 208 (391)
+++..++++++++|++||||||+++.|++.. .+..|++.+.+.+
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~------------~~~g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY------------KKKGFKVGLVGAD 135 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHH------------HHTTCCEEEEECC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEecC
Confidence 6666678999999999999999999999987 5556666654444
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00019 Score=63.95 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 246
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.11 E-value=0.0002 Score=76.16 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++..++|+|++|||||||++.|++..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 57899999999999999999999765
No 247
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.10 E-value=0.00036 Score=63.31 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc---c
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---L 237 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~---l 237 (391)
.++|+|++|||||||+|.|.+.. -.....+. +|+.+.......... +
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~--------------------------~~~~~~~~----~t~~~~~~~~~~~~~~~~l 80 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN--------------------------VDVQSYSF----TTKNLYVGHFDHKLNKYQI 80 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC--------------------------EEEECC---------CEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--------------------------CccCCCCC----cceeeeeeeeecCCCeEEE
Q ss_pred cCCccc
Q 016339 238 ADTPGF 243 (391)
Q Consensus 238 ~Dtpg~ 243 (391)
.||||.
T Consensus 81 ~DtpG~ 86 (228)
T 2qu8_A 81 IDTPGL 86 (228)
T ss_dssp EECTTT
T ss_pred EECCCC
No 248
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.07 E-value=0.00016 Score=73.91 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=20.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|-.++|+|++|||||||+|.|.+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35569999999999999999999864
No 249
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.0012 Score=56.58 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.++.+ .+........+++..+.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999987652 23334455544443 6789999999999985321 1122233445678888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 155 a~~~~gi~~l~~~l 168 (180)
T 2g6b_A 155 AKTGLNVDLAFTAI 168 (180)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888777765443
No 250
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.03 E-value=0.0018 Score=60.17 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=56.4
Q ss_pred ccceeEEEEEecCC-CCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-cCCeeEEEEcCCccc
Q 016339 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (391)
Q Consensus 76 nvD~~liv~s~~~p-~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~-~g~~~v~~s~~~~~~ 149 (391)
|+|.+++|+++..| ..+...+.+++.... ..++|+++|.||+|+.+...++........ .++..+.+|..++.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 89999999999875 245556666655443 357999999999999876555433333333 477888889888888
Q ss_pred hHHHhhc
Q 016339 150 LDSLLQR 156 (391)
Q Consensus 150 L~~ls~~ 156 (391)
++.+-..
T Consensus 242 v~elf~~ 248 (255)
T 3c5h_A 242 VDLAFST 248 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00018 Score=63.24 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=24.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00035 Score=61.58 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=24.5
Q ss_pred HHhhcc-cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 152 ~ls~~i-~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
++|+.. ++..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 355666 6889999999999999999999876
No 253
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.99 E-value=0.0016 Score=56.29 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=57.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~ 138 (391)
.+....+.++|.+++|+++..+ .....+..++.... ..++++++|+||+|+.+......+...+ ...++.
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 158 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE
Confidence 3445567899999999998875 34455555554443 3688999999999997642122222222 234456
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 159 ~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 159 IQACCALTGEGLCQGLEW 176 (181)
T ss_dssp EEECBTTTTBTHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHH
Confidence 777888877777776443
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00034 Score=59.97 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.99 E-value=0.00031 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|+||||||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999864
No 256
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.98 E-value=0.00027 Score=71.30 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|.+|||||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 257
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00028 Score=62.82 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00031 Score=62.92 Aligned_cols=23 Identities=48% Similarity=0.704 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||||||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997543
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.00018 Score=72.52 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccc
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v 209 (391)
+++++. ++++++|+|+|||||||++..|++.+ .+..|.+.+.+.++
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l------------~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH------------HTTTCCEEEEECCS
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEeeccc
Confidence 456666 88999999999999999999999988 66667776655443
No 260
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.95 E-value=0.00039 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998765
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00041 Score=60.11 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..+.|+|+|||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999765
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.00032 Score=61.26 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.92 E-value=0.00045 Score=60.24 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 264
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.91 E-value=0.00045 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999865
No 265
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.91 E-value=0.0017 Score=56.58 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=56.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcC
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWG 136 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g 136 (391)
.+.+..+.++|.+++|+++..+ .+...+..++..... .++++++|+||+|+.+....+.+...+. ..+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 3445567899999999998764 222333344433332 4789999999999976432233323331 235
Q ss_pred CeeEEEEcCCccchHHHhhcc
Q 016339 137 YEPLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~i 157 (391)
+..+.+|..++.+++.+-..+
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHH
Confidence 667788888877777765443
No 266
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.90 E-value=0.0011 Score=57.82 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+... .+........+|+..+.+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 34455678999999999987642 23334455544443 4789999999999975421 112223344568888999
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 165 Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 165 SAKENINVKQVFERL 179 (189)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 998888887765443
No 267
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0024 Score=57.41 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 268
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.87 E-value=0.0014 Score=56.15 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=57.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ .+.........++..+.+|
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 344557799999999998654 223444555544443 3678999999999975421 1223334456788888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 156 a~~g~gi~~l~~~l 169 (181)
T 2efe_B 156 AKTATNVKEIFYEI 169 (181)
T ss_dssp SSSCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88777777665443
No 269
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.87 E-value=0.00045 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 270
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.87 E-value=0.0018 Score=54.71 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
......++|.+++|+++..+. ....+..++.... ..++|+++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 150 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 344567999999999987642 3334445544333 25789999999999975321 12222344567888899999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 151 ~~~~gi~~l~~~ 162 (170)
T 1z08_A 151 KQNKGIEELFLD 162 (170)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888888776544
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00071 Score=61.44 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.9
Q ss_pred cchHHH-hhcc-cCCEEEEEecCCCcHHHHHHHHhc
Q 016339 148 LGLDSL-LQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 148 ~~L~~l-s~~i-~Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
..|+.+ .--+ +|++++|+||||||||||+..++.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356665 3334 899999999999999999665554
No 272
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00052 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 273
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0021 Score=55.84 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=56.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~ 139 (391)
+.+..+.++|.+++|+++..+ -+...+..++..... .++++++|+||+|+.+....+.+...+ ...++..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEE
Confidence 344557899999999999876 345555555554443 588999999999997632222222222 2345566
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWM 172 (187)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHH
Confidence 777777777776654433
No 274
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.86 E-value=0.00047 Score=58.26 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 275
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.85 E-value=0.00051 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++++|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 276
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.84 E-value=0.00055 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998764
No 277
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00048 Score=60.10 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999865
No 278
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.83 E-value=0.00054 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999764
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00054 Score=58.40 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEecCCCcHHHHHHHH
Q 016339 160 QTTVIVGPSGVGKSSLINAL 179 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L 179 (391)
.+++|+||+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 280
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.81 E-value=0.0012 Score=57.04 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=53.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445577999999999987652 33445556554443 4789999999999975311 1122233445678888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 152 a~~~~~i~~l~~~l 165 (183)
T 2fu5_C 152 AKANINVENAFFTL 165 (183)
T ss_dssp C---CCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88877777665443
No 281
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.00057 Score=58.48 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 282
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.79 E-value=0.00057 Score=57.48 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999754
No 283
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.79 E-value=0.0023 Score=54.34 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=55.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+...+++|.+++|+++..+. +...+..++..... .++|+++|+||+|+.+..+ .+........+++..+.+|.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 34567899999999987642 33444555544443 3789999999999975421 11112233456788889999
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 151 ~~g~gi~~l~~~l 163 (175)
T 2nzj_A 151 TLQHNVAELFEGV 163 (175)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888888765443
No 284
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.79 E-value=0.00096 Score=56.90 Aligned_cols=88 Identities=9% Similarity=0.212 Sum_probs=57.5
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.....+.++|.+++|+++..|. ....+..++.... ..++|+++|+||+|+.++.+ ..........+++..+.+|
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred HHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987642 2233334443332 35788999999999975421 1223334456688888999
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 158 a~~~~~i~~l~~~l 171 (179)
T 2y8e_A 158 AKAGYNVKQLFRRV 171 (179)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888887765443
No 285
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.78 E-value=0.0044 Score=52.37 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=55.9
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~ 138 (391)
.+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+......+...+ ...++.
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE
Confidence 33445677999999999987763 34444444443332 588999999999998753222232222 223456
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 145 ~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp EEECCTTTCTTHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHH
Confidence 677777777777665433
No 286
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.78 E-value=0.00053 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.78 E-value=0.00059 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999865
No 288
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.78 E-value=0.00064 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 289
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.78 E-value=0.0012 Score=58.75 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||++.|.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 290
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.78 E-value=0.00092 Score=58.53 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCC----cceecCccc
Q 016339 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG----SKWFEDQRV 209 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G----~I~~~g~~v 209 (391)
.++|+|++|||||||+|.+.+..-.... .|+.| .+.+++..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEE-------SPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCC-------CTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCc-------CCCcceEEEEEEECCEEE
No 291
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.77 E-value=0.0008 Score=58.41 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=59.1
Q ss_pred cccccccccceeEEEEEecCCCC-----CHHHHHHHHHHH--HhCCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~-----~~~~l~r~L~~a--~~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~-~~v 140 (391)
+.+....++|.+++|+++..|.. ....+.+++... ...++|+++|.||+|+.+....+.....+..+++ ..+
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 33446789999999999874311 122334444322 1258899999999999765333344455667788 888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 170 ~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEV 186 (198)
T ss_dssp ECBGGGTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHH
Confidence 89998888887765443
No 292
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.0006 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.77 E-value=0.00068 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.++.|+|++||||||+.+.|+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999997643
No 294
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.77 E-value=0.0006 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.77 E-value=0.0006 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
No 296
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.77 E-value=0.00063 Score=58.19 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 297
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.76 E-value=0.00061 Score=58.26 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
No 298
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.75 E-value=0.00018 Score=73.41 Aligned_cols=26 Identities=46% Similarity=0.562 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|-.++|+|++|||||||+|.|++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35579999999999999999999853
No 299
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.75 E-value=0.00097 Score=56.89 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
.+..+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA 159 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhccCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 34456799999999998765 223334444443333 5788999999999965321 12233445567888888898
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 160 ~~~~gi~~l~~~ 171 (179)
T 1z0f_A 160 KTGENVEDAFLE 171 (179)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776443
No 300
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.75 E-value=0.0026 Score=53.61 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=53.0
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..|. ....+..++..... .++|+++|.||+|+.+..+ .+........+++..+.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp --------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEe
Confidence 3344567999999999988652 33445555444433 4789999999999975421 111123344578888889
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 144 Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 144 SAALHHNVQALFEG 157 (166)
T ss_dssp BGGGTBSHHHHHHH
T ss_pred ccCCCCCHHHHHHH
Confidence 99888888776543
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.75 E-value=0.0008 Score=57.59 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||+|.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999999854
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.74 E-value=0.00059 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998643
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.74 E-value=0.00078 Score=59.58 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998765
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.73 E-value=0.00065 Score=59.02 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 305
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.73 E-value=0.0013 Score=56.80 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+....+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+... .+.........|+..+.+
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 3445678999999999987642 22333444433332 5889999999999975321 122223344567888888
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 165 Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 165 SAANGTNISHAIEM 178 (195)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 88888777766443
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.73 E-value=0.00066 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 307
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.72 E-value=0.0018 Score=57.41 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=54.9
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHH----------HHHHHHHHH
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEV----------LNTWKSRLH 133 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~----------~~~~~~~~~ 133 (391)
..+....+.++|.+++|+++..|. ....+. .++..... .++|+++|.||+|+.+... .+.......
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 344455678999999999987652 222232 44444443 3889999999999965432 112222334
Q ss_pred hcCC-eeEEEEcCCccchHHHhhc
Q 016339 134 TWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 134 ~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.+|+ ..+.+|..++.+++.+-..
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HcCCceEEEccCCCCCCHHHHHHH
Confidence 5565 6777787777777665443
No 308
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0017 Score=56.93 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=59.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+|
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred hhHHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999987652 33445555544443 3789999999999974321 2233344556788888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 167 a~~~~gi~~l~~~l 180 (192)
T 2fg5_A 167 AKNAINIEELFQGI 180 (192)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCcCHHHHHHHH
Confidence 88887777765444
No 309
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.0017 Score=56.75 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=57.0
Q ss_pred cccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHH--------------HH
Q 016339 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (391)
Q Consensus 65 R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~--------------~~ 127 (391)
+...+.+..+.++|.+++|+++..|. ....+. .++..... .++|+++|+||+|+.+.... +.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 33344556678999999999987642 222332 44444443 38999999999999764211 11
Q ss_pred HHHHHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 128 ~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.......+++ ..+.+|..++.+++.+-..
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 1223344566 6777888877777766443
No 310
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.71 E-value=0.0007 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.71 E-value=0.00072 Score=66.56 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=30.5
Q ss_pred cchHHHhhcc-cCCE--EEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i-~Ge~--vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+++.+ +|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3577788888 6777 9999999999999999998754
No 312
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.71 E-value=0.00069 Score=58.47 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.71 E-value=0.00041 Score=61.88 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 314
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.70 E-value=0.0019 Score=55.89 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=55.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~ 139 (391)
..+..+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+....+.....+. ..++..
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEE
Confidence 3445678999999999987652 33444444443332 5789999999999976533333222221 234566
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 777877777777664443
No 315
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.70 E-value=0.0019 Score=56.82 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=57.9
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 3445678999999999987652 33344555544443 5789999999999976421 1222233445688888888
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 152 a~~~~gi~~l~~~l 165 (203)
T 1zbd_A 152 AKDNINVKQTFERL 165 (203)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88877777654433
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.0023 Score=54.58 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=58.3
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.+......++|.+++|+++..| .....+..++..... .++|+++|+||+|+.+... ..........+++..+.+|
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 3445567899999999998765 233344455544433 3588999999999865421 1222234455688889999
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (181)
T 3tw8_B 152 AKENVNVEEMFNC 164 (181)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9888888776443
No 317
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.68 E-value=0.00079 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 318
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.68 E-value=0.00033 Score=71.35 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=30.1
Q ss_pred cchHHHhhcccCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 148 ~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++.+.-.++|+.++|+|+||+|||||+|.|+...
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 356666555599999999999999999999998764
No 319
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.68 E-value=0.00075 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 320
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.68 E-value=0.0015 Score=57.65 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=55.6
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~~~ 130 (391)
.+....+.++|.+++|+++..+. ....+ ..++..+.. .++|+++|+||+|+.+..... ....
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 34445678999999999987642 22233 334444433 389999999999998753221 1122
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHH
Confidence 3345666 6677788777777766433
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.0008 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.67 E-value=0.0013 Score=55.47 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=56.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH--hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~--~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
+.+....++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.++.+ .+........+++..+.+|.
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 3445677999999999987642 2223333333322 25899999999999975321 12223344567888899998
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 149 ~~~~~i~~l~~~ 160 (168)
T 1z2a_A 149 KEDLNVSEVFKY 160 (168)
T ss_dssp TTTBSSHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888887776543
No 323
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.67 E-value=0.00077 Score=57.16 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+-.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 324
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.67 E-value=0.00078 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 325
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.67 E-value=0.00085 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999999754
No 326
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.00077 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 327
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.65 E-value=0.0059 Score=60.67 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=52.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHHHHHHHHHHHh----c---CCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHT----W---GYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~~~~~~~~~~~----~---g~~~v~~s~ 144 (391)
.++++|.+++|+++..+...+ +...++..+...+. ++++|+||+|+++.++...+...+.+ . ++..+.+|.
T Consensus 95 ~~~~~D~~ilVvda~~~~~~~-qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp HHTTCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred HHhhCCEEEEEEECCCCCCcH-HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 467999999999998764333 34445555555554 88999999999988755443333322 2 345677777
Q ss_pred CCccchHHHh
Q 016339 145 ESKLGLDSLL 154 (391)
Q Consensus 145 ~~~~~L~~ls 154 (391)
.++.+++.+-
T Consensus 174 ~~g~gi~~L~ 183 (403)
T 3sjy_A 174 LHKINIDSLI 183 (403)
T ss_dssp TTTBSHHHHH
T ss_pred CCCcChHHHH
Confidence 6666655443
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.65 E-value=0.00087 Score=57.80 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhc
Q 016339 160 QTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~g 181 (391)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.64 E-value=0.0009 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.001 Score=59.10 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|.|++||||||+.+.|+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998643
No 331
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.63 E-value=0.001 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+..++|+|++||||||+.+.|+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998643
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.63 E-value=0.00091 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+..++|+|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
No 333
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.62 E-value=0.00075 Score=59.66 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=58.4
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~ 141 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++|+++|+||+|+.+... ..........+++..+.
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSL-HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCH-HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 3445567899999999998764 223344444444333 4789999999999975421 11122334467888888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 166 ~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 166 SSARENQLTQGIFTKV 181 (201)
T ss_dssp CCTTCHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9998888888775554
No 334
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.62 E-value=0.0037 Score=55.13 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=57.8
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..|. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 34455678999999999987652 33444555544433 4688999999999976421 111222334567888888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 151 Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTM 165 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 887777777665444
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.62 E-value=0.0012 Score=55.60 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=57.4
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+......++|.+++|+++..|. ....+..++..... .++++++|.||+|+.++.. .+.........++..+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987652 33445555544433 3678888999999965321 1222233456778888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 150 a~~g~gi~~l~~~i 163 (170)
T 1r2q_A 150 AKTSMNVNEIFMAI 163 (170)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
No 336
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.62 E-value=0.0019 Score=54.55 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
.....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+|+..+.+|.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 146 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred hHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEEC
Confidence 3445578999999999987642 23334455443333 4789999999999953211 11222334456788888898
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 147 ~~~~gv~~l~~~ 158 (170)
T 1g16_A 147 KNDDNVNEIFFT 158 (170)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776543
No 337
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.00088 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998765
No 338
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.61 E-value=0.0018 Score=56.54 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=57.6
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+|
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999987642 33344455544443 4788999999999965321 1122233445688888899
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 165 a~~~~gi~~l~~~l 178 (191)
T 2a5j_A 165 AKTACNVEEAFINT 178 (191)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
No 339
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.61 E-value=0.00087 Score=59.18 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 340
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.61 E-value=0.00083 Score=59.48 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998754
No 341
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.61 E-value=0.0025 Score=53.66 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=54.8
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
.+..+.++|.+++|+++..| -+...+..++..... .++|+++|+||+|+.+......+...+. ..++..+
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 139 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEE
Confidence 34457899999999998765 233444455544333 4789999999999976532222222221 1344567
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++++-..+
T Consensus 140 ~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 140 ATCATSGDGLYEGLDWL 156 (164)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EcccCCCcCHHHHHHHH
Confidence 77887777777664433
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.0039 Score=53.52 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=55.6
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~ 139 (391)
+....+.++|.+++|+++..+ .....+..++.... ..++|+++|+||+|+.+......+...+. ..++..
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 344557799999999998765 34445555554433 36789999999999976422222222221 223456
Q ss_pred EEEEcCCccchHHHhhc
Q 016339 140 LFCSVESKLGLDSLLQR 156 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~ 156 (391)
+.+|..++.+++++-..
T Consensus 157 ~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 157 VASSAIKGEGITEGLDW 173 (183)
T ss_dssp EEEBGGGTBTHHHHHHH
T ss_pred EEccCCCCcCHHHHHHH
Confidence 78888877777766443
No 343
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.0011 Score=58.02 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|++||||||+.+.|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998543
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.60 E-value=0.001 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 345
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.59 E-value=0.00035 Score=71.92 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEEcCCccchHHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
.+...+...++++++.+...+++|+|+|||||||||.+|.
T Consensus 42 ~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 42 RLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred eeecccccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.59 E-value=0.0025 Score=53.20 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=55.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+ .....+..++..... .++|+++|+||+|+.+... .+........+++..+.+|.
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred HHHhhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 34456789999999998654 222233334333322 3799999999999976321 11222333456788899998
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 147 ~~~~gi~~l~~~l 159 (166)
T 2ce2_X 147 KTRQGVEDAFYTL 159 (166)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888887765443
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.59 E-value=0.00096 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
No 348
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.58 E-value=0.0032 Score=54.15 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHH----HHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~----a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
+.+..+.++|.+++|+++..+. +...+..++.. ....++|+++|+||+|+.+... .+........+++..+.+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 82 MREQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp SHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEe
Confidence 3445577999999999987652 22223333322 2346789999999999965321 111223344567888899
Q ss_pred EcC-CccchHHHhhc
Q 016339 143 SVE-SKLGLDSLLQR 156 (391)
Q Consensus 143 s~~-~~~~L~~ls~~ 156 (391)
|.. ++.+++.+-..
T Consensus 161 Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHD 175 (183)
T ss_dssp BCSSSCBSHHHHHHH
T ss_pred ccCCCCCCHHHHHHH
Confidence 988 78787776443
No 349
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.58 E-value=0.00023 Score=72.96 Aligned_cols=58 Identities=38% Similarity=0.464 Sum_probs=0.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCCCCCCcccccCccCCCCCcceecCccccccccccCCCcceeeeEEEEeccCCCc-
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY- 236 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~~~~~~~~~~~~~~p~~G~I~~~g~~v~~v~~~~~~~~~ttr~i~~v~~~~~~~- 236 (391)
+|-.++|+|++|||||||+|.|.+.. ...++..++ +|++........++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~-------------------------~a~vs~~~g----TT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNED-------------------------RAIVTDIPG----TTRDVISEEIVIRGIL 292 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHT-------------------------BCCCCCSSC----CSSCSCCEEEEETTEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCC-------------------------CCccCCCCC----eeeeeEEEEEecCCeE
Q ss_pred --ccCCcccc
Q 016339 237 --LADTPGFN 244 (391)
Q Consensus 237 --l~Dtpg~~ 244 (391)
+.||||+.
T Consensus 293 ~~l~DTaG~~ 302 (482)
T 1xzp_A 293 FRIVDTAGVR 302 (482)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCcc
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.58 E-value=0.00097 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999754
No 351
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.58 E-value=0.0042 Score=53.85 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=54.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCee
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~-----~~~g~~~ 139 (391)
+.+..+.++|.+++|+++..|. +...+..++..... .++|+++|+||+|+.+......+...+ ...++..
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 3445577999999999998763 34444444433322 478999999999998653222222222 2234456
Q ss_pred EEEEcCCccchHHHhhc
Q 016339 140 LFCSVESKLGLDSLLQR 156 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~ 156 (391)
+.+|..++.+++.+-..
T Consensus 161 ~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EEccCCCccCHHHHHHH
Confidence 77777777777765443
No 352
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.58 E-value=0.001 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.58 E-value=0.0012 Score=58.70 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999854
No 354
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.57 E-value=0.001 Score=63.21 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=22.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999975
No 355
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.57 E-value=0.002 Score=56.46 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=49.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCC-HHH--HHHHHHHHHhcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~-~~~--~~~~~~~~~~~g~~~v 140 (391)
....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+ ... .+........+++..+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 344567999999999987653 33445555554443 5789999999999987 221 1223344556788888
Q ss_pred EEEcCC-ccchHHHhhc
Q 016339 141 FCSVES-KLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~-~~~L~~ls~~ 156 (391)
.+|..+ +.+++.+-..
T Consensus 169 ~~Sa~~~~~gi~~l~~~ 185 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLS 185 (208)
T ss_dssp ECCC-------CHHHHH
T ss_pred EeccCCCCcCHHHHHHH
Confidence 888887 7777665433
No 356
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.57 E-value=0.0016 Score=67.73 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|.+|||||||||.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999975
No 357
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.57 E-value=0.0012 Score=56.60 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=57.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~--~~~~~~~~~~~~g~~~v~~s 143 (391)
.+....++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.+.. ..+........+++..+.+|
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 344577999999999987652 222333332222 22478999999999996532 12233345567888888899
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 162 a~~~~gi~~l~~~l 175 (187)
T 2a9k_A 162 AKTRANVDKVFFDL 175 (187)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888877765443
No 358
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.57 E-value=0.00099 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999765
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.56 E-value=0.001 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999999754
No 360
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.56 E-value=0.0016 Score=55.88 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=57.0
Q ss_pred ccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHH------------HHHHH
Q 016339 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWKS 130 (391)
Q Consensus 66 ~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~------------~~~~~ 130 (391)
...+....+.++|.+++|+++..|. ....+. .++..... .++|+++|+||+|+.+.... +....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 3344555678999999999987642 222332 34433333 37899999999999654322 11222
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 148 LKKLIGAPAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHH
Confidence 3345676 7788888888887776543
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.56 E-value=0.0011 Score=57.36 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999754
No 362
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0011 Score=57.99 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 68999999999999999999754
No 363
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.56 E-value=0.0011 Score=60.71 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+|.+++|+|++||||||+.+.|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999863
No 364
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.55 E-value=0.003 Score=53.27 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=57.8
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEE
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~ 141 (391)
..+....+.++|.+++|+++..|. ....+..++.... ..+.++++|.||+|+.++.+ .+........+++..+.
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVE 147 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hcccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEE
Confidence 344455678999999999987652 2334444444433 34567889999999975421 11122333467888888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 148 ~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 148 TSAKNAININELFIEI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHH
Confidence 9988888887765443
No 365
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.55 E-value=0.0037 Score=54.19 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~-~~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+.. ..+........+++..+.+|.
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp ----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeC
Confidence 344567999999999987652 33344444433332 478999999999997521 111222334456788888888
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 165 ~~~~gi~~l~~~l 177 (190)
T 3con_A 165 KTRQGVEDAFYTL 177 (190)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777665443
No 366
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.54 E-value=0.0024 Score=53.73 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=54.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHH----HHhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCeeEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFC 142 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~----a~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~-g~~~v~~ 142 (391)
......++|.+++|+++..|. ....+..++.. ....++|+++|+||+|+.++.. .+........+ ++..+.+
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES 146 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEe
Confidence 344567899999999987652 12222222222 2235899999999999965421 11222233445 6788888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 147 Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 147 SAKSKINVNEIFYDL 161 (167)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHH
Confidence 988888888765443
No 367
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.53 E-value=0.0012 Score=59.47 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhc
Q 016339 159 DQTTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~g 181 (391)
+.+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.52 E-value=0.0012 Score=57.45 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999764
No 369
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.52 E-value=0.0011 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
No 370
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 371
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 372
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.52 E-value=0.0012 Score=62.10 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|.+|||||||+|.|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999875
No 373
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.0022 Score=55.87 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=58.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ ...........++..+.+
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~-~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKH-QTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhhHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 3444567899999999998764 223334455544443 3788999999999975321 122223345678888899
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 168 Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 168 SALDSTNVELAFET 181 (193)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 98888887776443
No 374
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0012 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 375
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.51 E-value=0.0036 Score=54.51 Aligned_cols=86 Identities=16% Similarity=0.070 Sum_probs=52.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
....+.++|.+++|+++..+ -....+..++..... .++++++|+||+|+.+......+...+. ..++..+
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQ-EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCY 162 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHccCCEEEEEEECCCH-HHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEE
Confidence 34456899999999998765 233444444443332 6889999999999976422222222221 1234556
Q ss_pred EEEcCCccchHHHhhc
Q 016339 141 FCSVESKLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~ 156 (391)
.+|..++.+++++-..
T Consensus 163 ~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 163 SISCKEKDNIDITLQW 178 (188)
T ss_dssp ECCTTTCTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 6777777666665443
No 376
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.51 E-value=0.0012 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.|.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 377
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.50 E-value=0.0012 Score=58.29 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999999865
No 378
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.50 E-value=0.0011 Score=58.25 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
No 379
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.50 E-value=0.0012 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
No 380
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.50 E-value=0.0032 Score=55.16 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=56.6
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
......++|.+++|+++..+. ....+..++.... ..++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 344567999999999987652 2233333333322 23789999999999975421 2223334456788888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 158 a~~g~gi~~l~~~l 171 (206)
T 2bov_A 158 AKTRANVDKVFFDL 171 (206)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88887777765443
No 381
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.49 E-value=0.0012 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 382
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.49 E-value=0.0019 Score=54.12 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
.+....++|.+++|+++..|. ....+..++.... ..++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETS 147 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 344567999999999987652 2223333332222 24789999999999965321 2223344456788888889
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 148 a~~~~gi~~l~~~ 160 (168)
T 1u8z_A 148 AKTRANVDKVFFD 160 (168)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888888776543
No 383
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.49 E-value=0.0013 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 384
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.49 E-value=0.0011 Score=63.06 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.|+|||||||||+.+.|+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997643
No 385
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.48 E-value=0.0047 Score=53.44 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=56.9
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHH-hCCCCEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeeEEEEcCCc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESK 147 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~-~~~~~~~lvlnK~Dl~~~~-~~~~~~~~~~~~g~~~v~~s~~~~ 147 (391)
....+.++|.+++|+.+..|. ....+..++.... ..++++++|+||+|+.+.. ..+.....+..+++..+.+|..++
T Consensus 110 ~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 188 (208)
T 3clv_A 110 VPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTG 188 (208)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred HHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCC
Confidence 344567999999999987652 2233444544433 3679999999999942211 123333455667888899999888
Q ss_pred cchHHHhhcc
Q 016339 148 LGLDSLLQRL 157 (391)
Q Consensus 148 ~~L~~ls~~i 157 (391)
.+++.+-..+
T Consensus 189 ~~i~~l~~~l 198 (208)
T 3clv_A 189 TNIKNIFYML 198 (208)
T ss_dssp TTHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8877765443
No 387
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.48 E-value=0.0042 Score=55.28 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~---~~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~ 142 (391)
.+......++|.+++|+++..+. ....+.+++.... ..++++++|+||+|+.+..+. +.........++..+.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 33444577899999999987642 2233334433333 347899999999999865322 11223345577888888
Q ss_pred EcCCccchHHHhhc
Q 016339 143 SVESKLGLDSLLQR 156 (391)
Q Consensus 143 s~~~~~~L~~ls~~ 156 (391)
|..++.+++.+-..
T Consensus 155 Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 155 SAKTAHNFGLPFLH 168 (218)
T ss_dssp BTTTTBTTTHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 98888777776443
No 388
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.48 E-value=0.0012 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999875
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0014 Score=56.90 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.-.++|+|++|||||||+|.|.+-.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999654
No 391
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.47 E-value=0.0013 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999865
No 392
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.47 E-value=0.0068 Score=53.07 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=55.3
Q ss_pred cccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHH--hCCCCEEEEEeCCCCCCHHH--------------HHH
Q 016339 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEV--------------LNT 127 (391)
Q Consensus 65 R~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~--~~~~~~~lvlnK~Dl~~~~~--------------~~~ 127 (391)
+...+.+..+.++|.+++|+++..+. ....+. .++.... ..++|+++|+||+|+.+... .+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPS-SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 33344555678999999999987652 222232 3433332 24889999999999975321 111
Q ss_pred HHHHHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 128 ~~~~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
.......+++ ..+.+|..++.+++.+-..
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 188 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFDA 188 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHHH
Confidence 1122334566 6777888777777765443
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.46 E-value=0.0012 Score=57.40 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
No 394
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.0012 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 396
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.46 E-value=0.0022 Score=61.43 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..++|+|++|||||||+|.+.+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999988764
No 397
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.46 E-value=0.003 Score=55.44 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=54.4
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeeE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPL 140 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~~~~~~~~~~-----~~g~~~v 140 (391)
.+..+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+......+...+. ..++..+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 168 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQ 168 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 344568999999999987652 34445555544333 4789999999999976532233322221 2234567
Q ss_pred EEEcCCccchHHHhhc
Q 016339 141 FCSVESKLGLDSLLQR 156 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~ 156 (391)
.+|..++.+++++-..
T Consensus 169 ~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDW 184 (192)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred ECcCCCcCCHHHHHHH
Confidence 7787777777766443
No 398
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.46 E-value=0.0013 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 399
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.45 E-value=0.0013 Score=57.14 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 400
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.44 E-value=0.0015 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.44 E-value=0.0032 Score=53.27 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
....++|.+++|+++..| -....+..++..... .++|+++|.||+|+.+..+ .+........+++..+.+|..
T Consensus 71 ~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhhccCCEEEEEEECCCh-HHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCc
Confidence 346789999999998764 223334444443333 3789999999999964321 122223445678888999998
Q ss_pred CccchHHHhhc
Q 016339 146 SKLGLDSLLQR 156 (391)
Q Consensus 146 ~~~~L~~ls~~ 156 (391)
++.+++++-..
T Consensus 150 ~~~~v~~l~~~ 160 (169)
T 3q85_A 150 LHHNTRELFEG 160 (169)
T ss_dssp TTBSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 88888776443
No 402
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.44 E-value=0.012 Score=52.45 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHH----HHHHHh-------cCCeeEEE
Q 016339 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW----KSRLHT-------WGYEPLFC 142 (391)
Q Consensus 74 ~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~~~~~~~----~~~~~~-------~g~~~v~~ 142 (391)
+..+|.+++|+.+..+ +... -..++......++++++|+||+|+.+..+.... ...+.. .+...+.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 3458888888888764 3322 122334445678999999999999987654322 223333 34567788
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 191 SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 191 SALKRTGLDDAHALI 205 (223)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCcCHHHHHHHH
Confidence 887777777654433
No 403
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.43 E-value=0.0014 Score=57.93 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0014 Score=57.06 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998754
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.42 E-value=0.0032 Score=54.01 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=54.0
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~~~ 130 (391)
.+....+.++|.+++|+++..+. +...+. .++..... .++|+++|+||+|+.+..... ....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 34445678999999999987642 222332 33333333 388999999999997643211 1122
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhhc
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~~ 156 (391)
....+++ ..+.+|..++.+++.+-..
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDE 173 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHH
Confidence 3344565 6777787777777665433
No 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.0013 Score=61.35 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+||||||||||.+.|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.40 E-value=0.0069 Score=51.56 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=52.2
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCHH------HHHHHHHHHHhcC
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEE------VLNTWKSRLHTWG 136 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-------~~~~~~lvlnK~Dl~~~~------~~~~~~~~~~~~g 136 (391)
......++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+.. +...+... ..+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~--~~~ 151 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS--LGD 151 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH--TTS
T ss_pred hHHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh--cCC
Confidence 344567999999999987652 22333333332222 678999999999996432 22222211 245
Q ss_pred CeeEEEEcCCccchHHHhhc
Q 016339 137 YEPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 137 ~~~v~~s~~~~~~L~~ls~~ 156 (391)
...+.+|..++.+++.+-..
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHH
Confidence 67888898888887776443
No 408
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.40 E-value=0.0015 Score=72.08 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=45.3
Q ss_pred CChhHH-hhhchhHHhhcCcccccccccccccccCC--CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 251 VTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 251 ~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~e--P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
+++..+ +++.+. .|||||+||++||+++ ..+ |.++|+| |+...+.+.++|++|+..
T Consensus 508 vGL~~l~l~r~~~---tLSGGEkQRV~LA~aL-~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~ 572 (993)
T 2ygr_A 508 VGLEYLSLSRAAA---TLSGGEAQRIRLATQI-GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL 572 (993)
T ss_dssp HTGGGSCTTCBGG---GCCHHHHHHHHHHHHH-TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCccccCCCcc---cCCHHHHHHHHHHHHH-hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc
Confidence 344333 344555 9999999999999999 777 5899999 888999999999999754
No 409
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0015 Score=56.79 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998764
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.39 E-value=0.0012 Score=64.93 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHhhcccCCEEEEEecCCCcHHHHHHHHh
Q 016339 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (391)
Q Consensus 151 ~~ls~~i~Ge~vaLvGpSGsGKSTLLn~L~ 180 (391)
+++.+.+...+++|+|||||||||+|-+|.
T Consensus 17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence 444455556799999999999999999976
No 411
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.39 E-value=0.0012 Score=58.31 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=38.1
Q ss_pred hcCccccccccccccccc----CCCcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 266 MLKANEPAKCSFNNCLHL----GEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 266 ~LSgGq~qr~~iaralh~----~eP~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.|||||+||++||+++ + ..|+++|+| |+.....+.+++.++...
T Consensus 64 ~LSgGekqr~ala~~l-a~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~ 117 (173)
T 3kta_B 64 AMSGGEKALTALAFVF-AIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE 117 (173)
T ss_dssp GCCHHHHHHHHHHHHH-HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHH-HhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC
Confidence 8999999999999999 5 346899999 888999999999887543
No 412
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0014 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999754
No 413
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.39 E-value=0.0014 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.39 E-value=0.0025 Score=55.69 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=57.2
Q ss_pred cccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHH--hCCCCEEEEEeCCCCCCHH----HHHHHHHHHHhcCCe-
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYE- 138 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~--~~~~~~~lvlnK~Dl~~~~----~~~~~~~~~~~~g~~- 138 (391)
..+......++|.+++|+++..+. ....+ ..++.... ..++|+++|.||+|+.++. ..+........+|+.
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRT-SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHHhHhhccCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 344455678999999999987652 22222 33333333 2468999999999997531 112222344556776
Q ss_pred eEEEEcCCccchHHHhhcc
Q 016339 139 PLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i 157 (391)
.+.+|..++.+++.+-..+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHH
Confidence 7888988888888765443
No 415
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.39 E-value=0.0015 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999999754
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0017 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999875
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0015 Score=60.46 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..+++|.|||||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999843
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.38 E-value=0.0015 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.+++|.|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.38 E-value=0.0029 Score=53.95 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=55.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-----CCCC-EEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-----~~~~-~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v 140 (391)
+.+..+.++|.+++|+++..|. ....+..++..... .+.+ +++|.||+|+.+... .+........+++..+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred hhhHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 3344578999999999987652 22233344433333 3667 688999999965311 1122233345678888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 151 ~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99988888777765443
No 421
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0021 Score=57.83 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=54.9
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEE
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~ 142 (391)
.+....+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ .+........+++..+.+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKS-SSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCH-HHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHhccCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 3445567899999999998765 233445555544443 3788999999999965321 112223344567788888
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 156 Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 156 SALNSENVDKAFEEL 170 (223)
T ss_dssp CCC-CCCHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 888777777664443
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.37 E-value=0.0016 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998653
No 423
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0016 Score=58.12 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.37 E-value=0.0015 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 425
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.36 E-value=0.0013 Score=65.06 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|+||||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
No 426
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.36 E-value=0.0016 Score=57.33 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|+||||||||++.|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998764
No 427
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0016 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..++|+|++|||||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.35 E-value=0.0016 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998764
No 429
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0017 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0016 Score=57.10 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.|.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999764
No 431
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.001 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..+.|+|+|||||||+.+.|+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998865
No 432
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.33 E-value=0.0011 Score=59.07 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.33 E-value=0.0027 Score=56.49 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
...+.++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+..+ ..........+++..+.+|.
T Consensus 102 ~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 3456799999999998754 223334445433322 5788999999999975321 12222334557888889998
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 181 ~~g~gi~~l~~~l 193 (217)
T 2f7s_A 181 ATGQNVEKAVETL 193 (217)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777664433
No 434
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.002 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998544
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.32 E-value=0.0019 Score=57.75 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.|.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.31 E-value=0.0019 Score=56.78 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||+|.+.+-.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCC
Confidence 44579999999999999999997643
No 437
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0026 Score=53.56 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCH---HH--HHHHHHHHHhcCCeeE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDE---EV--LNTWKSRLHTWGYEPL 140 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~---~~--~~~~~~~~~~~g~~~v 140 (391)
+....+.++|.+++|+++..| .....+..++..... .++++++|+||+|+.+. .+ .+........+++..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKP-QSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred hhhhhhccCcEEEEEEecCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 344557899999999998765 223344444433332 47889999999999754 11 1111223345678888
Q ss_pred EEEcCCccchHHHhhcc
Q 016339 141 FCSVESKLGLDSLLQRL 157 (391)
Q Consensus 141 ~~s~~~~~~L~~ls~~i 157 (391)
.+|..++.+++.+-..+
T Consensus 147 ~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGI 163 (170)
T ss_dssp ECCTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 88888888877765444
No 438
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.31 E-value=0.0019 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.31 E-value=0.0017 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999998754
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0041 Score=54.20 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=56.3
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcC
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~ 145 (391)
.....++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+... .+........+|+..+.+|..
T Consensus 90 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNE-ESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 3456799999999998754 222334445444444 5789999999999964321 111122334568888889998
Q ss_pred CccchHHHhhcc
Q 016339 146 SKLGLDSLLQRL 157 (391)
Q Consensus 146 ~~~~L~~ls~~i 157 (391)
++.+++++-..+
T Consensus 169 ~~~gi~~l~~~l 180 (191)
T 3dz8_A 169 ENISVRQAFERL 180 (191)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888887765443
No 441
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.0019 Score=58.45 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
No 442
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.29 E-value=0.0012 Score=56.85 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=9.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 443
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.29 E-value=0.0012 Score=65.03 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|+++.|.||||||||||+..++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999875
No 444
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.29 E-value=0.0079 Score=51.38 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=52.5
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHH---HHHHHh---CCCCEEEEEeCCCCC-------CHHHHHHHHHHHHhc-CCe
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEAES---TGIPLTLALNKVELV-------DEEVLNTWKSRLHTW-GYE 138 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~---L~~a~~---~~~~~~lvlnK~Dl~-------~~~~~~~~~~~~~~~-g~~ 138 (391)
...++|.+++|+++..|. +...+..+ +..... .++|+++|.||+|+. ..++...+. ..+ ++.
T Consensus 69 ~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~---~~~~~~~ 144 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX---ADMKRCS 144 (178)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH---HHHSSEE
T ss_pred HHHhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH---HhhcCCe
Confidence 356899999999987653 34445553 322222 478999999999993 233333332 333 567
Q ss_pred eEEEEcCCccchHHHhhc
Q 016339 139 PLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~ 156 (391)
.+.+|..++.+++.+-..
T Consensus 145 ~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQE 162 (178)
T ss_dssp EEEEBTTTTBTHHHHHHH
T ss_pred EEEEeccccCCHHHHHHH
Confidence 888998888888776443
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.28 E-value=0.0019 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 446
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.28 E-value=0.011 Score=50.20 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=51.1
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCH--HHHHHHHHHHH----hcC--CeeEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~~~--~~~~~~~~~~~----~~g--~~~v~ 141 (391)
....+.++|.+++|+++..+.. ...+ ..+......++|+++|+||+|+.+. ++...+...+. .++ +..+.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445678999999999876532 2222 3344445678999999999999864 22222211111 122 35667
Q ss_pred EEcCCccchHHHhh
Q 016339 142 CSVESKLGLDSLLQ 155 (391)
Q Consensus 142 ~s~~~~~~L~~ls~ 155 (391)
+|..++.+++.+-.
T Consensus 150 ~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 150 LSAKTKEGLDHLLE 163 (178)
T ss_dssp CCSSSSHHHHHHHH
T ss_pred EecCCCCCHHHHHH
Confidence 77777776666543
No 447
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.002 Score=58.23 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998654
No 448
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.28 E-value=0.0016 Score=56.55 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=18.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++|.|++||||||+.+.|+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998654
No 449
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.4
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999754
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.27 E-value=0.0031 Score=55.79 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=56.9
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCC-eeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGY-EPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~-~~v~~s 143 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|.||+|+.+... .+........+++ ..+.+|
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred HHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe
Confidence 344567999999999987642 23334444444333 5688999999999975311 1222234456788 788889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 174 A~~g~gi~~l~~~l 187 (201)
T 2hup_A 174 AKDSSNVEEAFLRV 187 (201)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88888887765444
No 451
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.27 E-value=0.0026 Score=56.25 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=57.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
+....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+... ...........++..+.+|
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 168 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETS 168 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445578999999999987652 23334445443332 4789999999999964321 1222334456788888889
Q ss_pred cCCccchHHHhhcc
Q 016339 144 VESKLGLDSLLQRL 157 (391)
Q Consensus 144 ~~~~~~L~~ls~~i 157 (391)
..++.+++.+-..+
T Consensus 169 A~~g~gi~~l~~~l 182 (200)
T 2o52_A 169 ALTGENVEEAFLKC 182 (200)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 88887777665443
No 452
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0026 Score=54.50 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=28.1
Q ss_pred CCccchHHHhhcc---cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i---~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+....++.+.-.+ .+..+.|.||+|+|||||++.++...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3334445444444 34678999999999999999998764
No 453
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.25 E-value=0.0018 Score=56.30 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-.++|+|++|||||||+|.+.+-.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~ 46 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGD 46 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
No 454
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.018 Score=56.07 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=59.3
Q ss_pred cccceeEEEEEecCC-CCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCCccchH
Q 016339 75 ANVDHLLLLFSMDQP-KLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (391)
Q Consensus 75 anvD~~liv~s~~~p-~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~~~~L~ 151 (391)
.++|.+++|+.+..+ .++.....+++..... .++++++|+||+|+.+..+.......+...+...+.+|..++.+++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGID 324 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHH
Confidence 468988888887544 2355555555444333 3899999999999998766555555555678888999988888888
Q ss_pred HHhhcc
Q 016339 152 SLLQRL 157 (391)
Q Consensus 152 ~ls~~i 157 (391)
++-..+
T Consensus 325 ~l~~~i 330 (357)
T 2e87_A 325 LVKEEI 330 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.25 E-value=0.0023 Score=56.28 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 016339 161 TTVIVGPSGVGKSSLINALRS 181 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~g 181 (391)
.++|+|++|||||||+|.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
No 456
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.24 E-value=0.0012 Score=59.11 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=53.9
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEcCC
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
+......++|.+++|+++..+ .....+..++..... .++++++|+||+|+.+.............+++..+.+|..+
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS 158 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGG
T ss_pred HHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCC
Confidence 344456799999999998764 223333444443333 37899999999999764322222223345577778888777
Q ss_pred ccchHHHh
Q 016339 147 KLGLDSLL 154 (391)
Q Consensus 147 ~~~L~~ls 154 (391)
+.+++.+-
T Consensus 159 ~~gi~~l~ 166 (221)
T 3gj0_A 159 NYNFEKPF 166 (221)
T ss_dssp TBTTTHHH
T ss_pred CCCHHHHH
Confidence 76666553
No 457
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.24 E-value=0.0021 Score=57.53 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 458
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.24 E-value=0.0032 Score=55.91 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=55.7
Q ss_pred ccccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHh--CCCCEEEEEeCCCCCCHHHHH--------------HH
Q 016339 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TW 128 (391)
Q Consensus 66 ~~~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~--------------~~ 128 (391)
...+....+.++|.+++|+++..+. ....+. .++..... .++|+++|+||+|+.+..... ..
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHH
Confidence 3344455678999999999987642 222232 34444443 389999999999997654311 11
Q ss_pred HHHHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 129 KSRLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 129 ~~~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
......+++ ..+.+|..++.+++.+-.
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence 223344565 467778877777776643
No 459
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.23 E-value=0.0023 Score=56.75 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCccchHHHhhcc-cC---CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-RD---QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~G---e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+....++.+...+ .| ..+.|.||+|+|||||++.++...
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445566665555 33 378999999999999999998654
No 460
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.22 E-value=0.0025 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998654
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.22 E-value=0.0021 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999999754
No 462
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.22 E-value=0.0034 Score=52.54 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=54.4
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
...+.++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.++.+ ..........+++..+.+|.
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 69 DLYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred HHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 34567899999999987642 222333333222 235899999999999965421 11222334456888899999
Q ss_pred CCccchHHHhhc
Q 016339 145 ESKLGLDSLLQR 156 (391)
Q Consensus 145 ~~~~~L~~ls~~ 156 (391)
.++.+++.+-..
T Consensus 148 ~~~~gi~~l~~~ 159 (167)
T 1kao_A 148 KSKTMVDELFAE 159 (167)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 888877776443
No 463
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.19 E-value=0.0026 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+.+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998643
No 464
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.19 E-value=0.0025 Score=54.29 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=56.4
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~~ 142 (391)
+......++|.+++|+++..+. ....+..++... ...++++++|+||+|+.+..+. ..........++..+.+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQ-SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEA 151 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhhCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 3344567999999999987642 222333333222 3458899999999999754211 11222334568888889
Q ss_pred EcCCccchHHHhhcc
Q 016339 143 SVESKLGLDSLLQRL 157 (391)
Q Consensus 143 s~~~~~~L~~ls~~i 157 (391)
|..++.+++.+-..+
T Consensus 152 Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQL 166 (181)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHH
Confidence 988888887765443
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0023 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 466
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.17 E-value=0.0061 Score=52.34 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=54.8
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
+.+..+.++|.+++|+.+..+. ....+..++.... ..++|+++|+||+|+.+... .+........+++..+.+|
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 146 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS 146 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445577899999999987642 2233333333322 35789999999999975321 1112223345677888888
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 147 a~~g~gi~~l~~~ 159 (189)
T 4dsu_A 147 AKTRQGVDDAFYT 159 (189)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877777765433
No 467
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0037 Score=55.43 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=51.3
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHH-HHHHHHHHh--CCCCEEEEEeCCCCCCHHHHHHHH--------------H
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNTWK--------------S 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l-~r~L~~a~~--~~~~~~lvlnK~Dl~~~~~~~~~~--------------~ 130 (391)
.+....+.++|.+++|+++..+. ....+ ..++..... .++|+++|+||+|+.+......+. .
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 34455678999999999987642 22233 233333333 389999999999997653322211 1
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
....+++ ..+.+|..++.+++.+-.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHH
Confidence 1223444 555666666666655543
No 468
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.16 E-value=0.0063 Score=53.36 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=54.2
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCHHH-HHHHHHHHH-hcCCe
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYE 138 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-------~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~-~~g~~ 138 (391)
.+....+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+....... ..++.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred HhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 34445678999999999987642 22233333332221 4789999999999974321 111112222 45667
Q ss_pred eEEEEcCCccchHHHhhcc
Q 016339 139 PLFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 139 ~v~~s~~~~~~L~~ls~~i 157 (391)
.+.+|..++.+++.+-..+
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 7888887777777665444
No 469
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.16 E-value=0.0025 Score=57.15 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|.||+||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 470
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.15 E-value=0.0026 Score=55.24 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.+++|.|++||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 471
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.14 E-value=0.0026 Score=55.45 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 472
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.14 E-value=0.0023 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 473
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0021 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
-+.|+||||+|||||+++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 474
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.14 E-value=0.011 Score=51.60 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=53.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCHHHHHHHHHHHHh----------
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT---------- 134 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~----~~~~~~~lvlnK~Dl~~~~~~~~~~~~~~~---------- 134 (391)
+.+....++|.+++|+++..+. +...+..++.... ..++|+++|.||+|+.+....+.....+..
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred HHHHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence 3344567999999999987652 3344444444332 367899999999999753212222222221
Q ss_pred --cCCeeEEEEcCCccchHHHhhc
Q 016339 135 --WGYEPLFCSVESKLGLDSLLQR 156 (391)
Q Consensus 135 --~g~~~v~~s~~~~~~L~~ls~~ 156 (391)
.+...+.+|..++.+++++-..
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHH
T ss_pred ccceEEEEEeECCcCCCHHHHHHH
Confidence 2335667777777777766433
No 475
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.13 E-value=0.004 Score=54.37 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=54.8
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHh------CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~------~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
..+.++|.+++|+++..+. +...+..++..... .++++++|.||+|+.+..+ .+........+++..+.+|
T Consensus 87 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 3567899999999997642 23344444444332 5899999999999964311 1112233455688888888
Q ss_pred c-CCccchHHHhhc
Q 016339 144 V-ESKLGLDSLLQR 156 (391)
Q Consensus 144 ~-~~~~~L~~ls~~ 156 (391)
. .++.+++.+-..
T Consensus 166 a~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 166 ACLDFEHVQHVFHE 179 (187)
T ss_dssp SSSCSHHHHHHHHH
T ss_pred ecCccccHHHHHHH
Confidence 8 777777766443
No 476
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.13 E-value=0.003 Score=54.39 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=56.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH---HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEc
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a---~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~ 144 (391)
....+.++|.+++|+++..+. ....+..++... ...++|+++|+||+|+.+..+ ...........++..+.+|.
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 345578999999999987642 233334444322 235789999999999964321 12223344567888888888
Q ss_pred CCccchHHHhhcc
Q 016339 145 ESKLGLDSLLQRL 157 (391)
Q Consensus 145 ~~~~~L~~ls~~i 157 (391)
.++.+++.+-..+
T Consensus 155 ~~~~gi~~l~~~l 167 (186)
T 2bme_A 155 LTGENVEEAFVQC 167 (186)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777664433
No 477
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0028 Score=53.41 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=54.3
Q ss_pred cccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh-----CCCCEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeeEE
Q 016339 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLF 141 (391)
Q Consensus 69 ~~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~-----~~~~~~lvlnK~Dl~~~~~~--~~~~~~~~~~g~~~v~ 141 (391)
+.+..+.++|.+++|+++..|. ....+..++..... .++|+++|+||+|+.+..+. .........+++..+.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 3344567899999999987642 12222233222222 47899999999999654211 1112233456788888
Q ss_pred EEcCCccchHHHhhcc
Q 016339 142 CSVESKLGLDSLLQRL 157 (391)
Q Consensus 142 ~s~~~~~~L~~ls~~i 157 (391)
+|..++.+++.+-..+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 146 TSAKLNHNVKELFQEL 161 (172)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHH
Confidence 8888888877765444
No 478
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.12 E-value=0.0012 Score=66.61 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
++.+++++||+||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999876
No 479
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.11 E-value=0.0053 Score=53.97 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred cccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--------HHHHHHHHHhcCCee
Q 016339 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--------LNTWKSRLHTWGYEP 139 (391)
Q Consensus 71 ~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--------~~~~~~~~~~~g~~~ 139 (391)
...+.++|.+++|+++..+. ....+..++..... .++|+++|+||+|+.+... .+........+++..
T Consensus 95 ~~~~~~~d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEK-SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF 173 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEE
T ss_pred HHHHhhCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeE
Confidence 34567999999999987542 23334444433332 4789999999999963210 111112334567788
Q ss_pred EEEEcCCccchHHHhhcc
Q 016339 140 LFCSVESKLGLDSLLQRL 157 (391)
Q Consensus 140 v~~s~~~~~~L~~ls~~i 157 (391)
+.+|..++.+++++-..+
T Consensus 174 ~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 174 CETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 888888888777765443
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.11 E-value=0.0018 Score=61.18 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCccchHHHhhcc-c-----------CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 145 ESKLGLDSLLQRL-R-----------DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 145 ~~~~~L~~ls~~i-~-----------Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+...+++.+...+ . ...+.|+||+|+|||||+++|+...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5666777777766 1 2579999999999999999999875
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.11 E-value=0.0018 Score=63.98 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+..++|+||||||||||++.|+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 482
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.11 E-value=0.0079 Score=57.55 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred ccccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC-CHHHHHHHHHHHH-hcC--CeeEEEEcCCc
Q 016339 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLH-TWG--YEPLFCSVESK 147 (391)
Q Consensus 72 ~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~~~~lvlnK~Dl~-~~~~~~~~~~~~~-~~g--~~~v~~s~~~~ 147 (391)
..+.++|.+++|+.+..+ .......-++......++|+++|+||+|+. +......+...+. .++ ...+.+|..++
T Consensus 88 ~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g 166 (308)
T 3iev_A 88 QSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG 166 (308)
T ss_dssp HHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred HHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 456799999999998764 444444433555566789999999999998 5544444433333 233 34555555444
Q ss_pred cchHH
Q 016339 148 LGLDS 152 (391)
Q Consensus 148 ~~L~~ 152 (391)
.+++.
T Consensus 167 ~gv~~ 171 (308)
T 3iev_A 167 ANLDE 171 (308)
T ss_dssp BSHHH
T ss_pred CCHHH
Confidence 44333
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0047 Score=53.73 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=52.5
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHH---HHHH--hCCCCEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFL---VEAE--STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L---~~a~--~~~~~~~lvlnK~Dl~~~~~-~~~~~~~~~~~g~~~v~~s 143 (391)
.+..+.++|.+++|+++..|. ....+..++ .... ..++|+++|+||+|+.+... ..........+++..+.+|
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 151 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQ-SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETS 151 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEe
Confidence 344567999999999987642 122222222 2222 14789999999999975321 1122233445677888888
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (199)
T 2gf0_A 152 AKMNYNVKELFQE 164 (199)
T ss_dssp TTTTBSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 8777777665433
No 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.10 E-value=0.0035 Score=56.19 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred cccccccccccceeEEEEEecCCCCCHHH-HHHHHHHHHh--CCCCEEEEEeCCCCCCH-----------------HHHH
Q 016339 67 TEILDPPVANVDHLLLLFSMDQPKLEPFA-LTRFLVEAES--TGIPLTLALNKVELVDE-----------------EVLN 126 (391)
Q Consensus 67 ~~~~~~~~anvD~~liv~s~~~p~~~~~~-l~r~L~~a~~--~~~~~~lvlnK~Dl~~~-----------------~~~~ 126 (391)
..+.+....++|.+++|+++..+. +... +..++..... .++|+++|.||+|+.++ ++..
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 344455678999999999998752 2222 3445444443 37899999999999642 2222
Q ss_pred HHHHHHHhcCC-eeEEEEcCCccc-hHHHhhcc
Q 016339 127 TWKSRLHTWGY-EPLFCSVESKLG-LDSLLQRL 157 (391)
Q Consensus 127 ~~~~~~~~~g~-~~v~~s~~~~~~-L~~ls~~i 157 (391)
.....+++ ..+.+|..++.+ ++.+-..+
T Consensus 168 ---~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 168 ---AIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp ---HHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred ---HHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 23345677 777888877776 77664433
No 485
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.10 E-value=0.011 Score=52.00 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEEcCC
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~----~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s~~~ 146 (391)
...++|.+++|+++..+ -+...+..++..... .++|+++|.||+|+.+... .+........+++..+.+|..+
T Consensus 93 ~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDR-RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred hhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 35689999999998764 223334455544433 4789999999999975321 1122223345678888999988
Q ss_pred ccchHHHhhcc
Q 016339 147 KLGLDSLLQRL 157 (391)
Q Consensus 147 ~~~L~~ls~~i 157 (391)
+.+++.+-..+
T Consensus 172 ~~~v~~lf~~l 182 (195)
T 3cbq_A 172 HHNTRELFEGA 182 (195)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887765443
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.07 E-value=0.0028 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.++|+|++|||||||+|.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
No 487
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.07 E-value=0.003 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 159 Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
..+++|.|++||||||+.+.|+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998544
No 488
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.07 E-value=0.0016 Score=71.52 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=45.7
Q ss_pred hCChhHH-hhhchhHHhhcCcccccccccccccccCC--CcEEEec------CHHHHHHHHHHHHHHHHH
Q 016339 250 KVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKG------DWERYQYYFQLLDEIRIR 310 (391)
Q Consensus 250 ~~~~~~l-~~~~p~~~~~LSgGq~qr~~iaralh~~e--P~~lllD------D~~~~~~~~~ll~el~~~ 310 (391)
.+++..+ +++.+. .|||||+||++||+++ ..+ |.++|+| |+...+.++++|++|+..
T Consensus 490 ~vGL~~l~ldR~~~---tLSGGEkQRV~LA~aL-~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~ 555 (972)
T 2r6f_A 490 NVGLDYLTLSRSAG---TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 555 (972)
T ss_dssp HHTCTTSBSSSBGG---GCCHHHHHHHHHHHHH-TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred hCCCCccccCCccc---cCCHHHHHHHHHHHHH-hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC
Confidence 4444433 455566 9999999999999999 776 5999999 788889999999999754
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.06 E-value=0.00099 Score=58.89 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=50.7
Q ss_pred ccccccccccceeEEEEEecCCCCCHHHHH-HHHHHHHhC--CCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 016339 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAEST--GIPLTLALNKVELVDEEVL--------------NTWKS 130 (391)
Q Consensus 68 ~~~~~~~anvD~~liv~s~~~p~~~~~~l~-r~L~~a~~~--~~~~~lvlnK~Dl~~~~~~--------------~~~~~ 130 (391)
.+.+..+.++|.+++|+++..+.. ...+. .++...... ++|+++|+||+|+.+.... +....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 344456789999999999876532 22222 333333333 7899999999999764311 11112
Q ss_pred HHHhcCC-eeEEEEcCCccchHHHhh
Q 016339 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (391)
Q Consensus 131 ~~~~~g~-~~v~~s~~~~~~L~~ls~ 155 (391)
....+++ ..+.+|..++.+++.+-.
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
Confidence 2233444 556667666666665543
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.06 E-value=0.0028 Score=56.86 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred CEEEEEecCCCcHHHHHHHHhcC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl 182 (391)
..++|+|++|||||||++.|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.0033 Score=60.23 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCeeEEEEcCCccchHHHhhcc-cC--CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRL-RD--QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 127 ~~~~~~~~~g~~~v~~s~~~~~~L~~ls~~i-~G--e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.|...|+--.++.+ ++...+++.+...+ .| ..+.|.||+|+|||||+++|++..
T Consensus 26 ~~~~k~~p~~~~~i---~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 26 PWVEKYRPKNLDEV---TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CHHHHTCCSSTTTC---CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHhcCCCCHHHh---hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45554433223322 46677888888777 33 348999999999999999998764
No 492
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.05 E-value=0.023 Score=56.46 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=49.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHHHH----HHHHHHHh---cCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLN----TWKSRLHT---WGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~~~----~~~~~~~~---~g~~~v~~s~ 144 (391)
.++.+|.+++|+++..+...+...+ .+..+...+. ++++|+||+|+.+..... .+...+.. .++..+.+|.
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTRE-HLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred hhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeC
Confidence 3568899999999987543444333 3334444455 688899999999865322 22233332 2456677777
Q ss_pred CCccchHHHh
Q 016339 145 ESKLGLDSLL 154 (391)
Q Consensus 145 ~~~~~L~~ls 154 (391)
.++.+++.+.
T Consensus 182 ~~g~gi~~L~ 191 (410)
T 1kk1_A 182 LHGANIDVLV 191 (410)
T ss_dssp TTTBSHHHHH
T ss_pred CCCCCHHHHH
Confidence 6666655443
No 493
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.04 E-value=0.0013 Score=57.73 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=4.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 016339 161 TTVIVGPSGVGKSSLINALRSS 182 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl 182 (391)
.++|+|++|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
No 494
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.04 E-value=0.0031 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 495
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.03 E-value=0.0048 Score=54.00 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~---~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~-g~~~v~~s 143 (391)
....+.++|.+++|+++..+. ....+..++..... .++++++|+||+|+.+..+ .+........+ ++..+.+|
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKE-TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECB
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEe
Confidence 344567999999999987652 23334444433333 4789999999999965421 11112222333 67788889
Q ss_pred cCCccchHHHhhc
Q 016339 144 VESKLGLDSLLQR 156 (391)
Q Consensus 144 ~~~~~~L~~ls~~ 156 (391)
..++.+++++-..
T Consensus 171 A~~g~gi~~l~~~ 183 (192)
T 2il1_A 171 AKDNFNVDEIFLK 183 (192)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888888776543
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.02 E-value=0.0031 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHhcCC
Q 016339 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 158 ~Ge~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+.-.++|+|++|||||||++.+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998643
No 497
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.003 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 016339 161 TTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 161 ~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998754
No 498
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.00 E-value=0.011 Score=58.72 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=45.9
Q ss_pred cccccceeEEEEEecCCCCCHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCHHH----HHHHHHHHHh---cCCeeEEEEc
Q 016339 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEV----LNTWKSRLHT---WGYEPLFCSV 144 (391)
Q Consensus 73 ~~anvD~~liv~s~~~p~~~~~~l~r~L~~a~~~~~-~~~lvlnK~Dl~~~~~----~~~~~~~~~~---~g~~~v~~s~ 144 (391)
-++++|.+++|+++..+...+...+ ++..++..+. ++++|+||+|+.+... .+...+.+.+ .++..+.+|.
T Consensus 101 ~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPCPQPQTKE-HLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp TCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC--
T ss_pred hHhhCCEEEEEEECCCCCCCchhHH-HHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeC
Confidence 3678999999999987643544443 3444566665 6889999999987532 2223333332 2345666666
Q ss_pred CCccchHHH
Q 016339 145 ESKLGLDSL 153 (391)
Q Consensus 145 ~~~~~L~~l 153 (391)
.++.+++.+
T Consensus 180 ~~g~gi~~L 188 (408)
T 1s0u_A 180 HHEANIDVL 188 (408)
T ss_dssp ----CHHHH
T ss_pred CCCCCHHHH
Confidence 655555443
No 499
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.97 E-value=0.0031 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhcCC
Q 016339 160 QTTVIVGPSGVGKSSLINALRSSP 183 (391)
Q Consensus 160 e~vaLvGpSGsGKSTLLn~L~gl~ 183 (391)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 500
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.0047 Score=54.06 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=54.3
Q ss_pred ccccccccceeEEEEEecCCCCCHHHHHHHHHHH----HhCCCCEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeeEEEE
Q 016339 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (391)
Q Consensus 70 ~~~~~anvD~~liv~s~~~p~~~~~~l~r~L~~a----~~~~~~~~lvlnK~Dl~~~~~--~~~~~~~~~~~g~~~v~~s 143 (391)
....+.++|.+++|+++..|. ....+..++... ...++|+++|+||+|+.+..+ .+........+++..+.+|
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 170 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECS 170 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECC
T ss_pred hhhhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEEC
Confidence 344567999999999987652 222233333222 235889999999999975321 1112223345678888888
Q ss_pred cCCcc-chHHHhhc
Q 016339 144 VESKL-GLDSLLQR 156 (391)
Q Consensus 144 ~~~~~-~L~~ls~~ 156 (391)
..++. +++.+-..
T Consensus 171 a~~g~~gi~~l~~~ 184 (196)
T 2atv_A 171 ACTGEGNITEIFYE 184 (196)
T ss_dssp TTTCTTCHHHHHHH
T ss_pred CCcCCcCHHHHHHH
Confidence 88877 77766443
Done!