BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016340
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 241 bits (614), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 44/373 (11%)
Query: 9 DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPP 68
D+ ++Y VLIK Q AD FY NG++F+ E +VC ++++ E + + AS P
Sbjct: 196 DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPV 255
Query: 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD--ERP 126
TELP C +CLER+D +GIL+T+C+HSF C +W +C VCR+C + E
Sbjct: 256 MDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEEN 315
Query: 127 TCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 186
C CG ENLW+CLICG +GCGRY HA +H+++TQH Y++ L ++WDY GDNYVH
Sbjct: 316 KCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVH 375
Query: 187 RLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQL 246
RL SK DGK+V+ +E TC+ K++A+ EY+ LL +QL
Sbjct: 376 RLVASKTDGKIVQ-------YECEGDTCQ------------EEKIDALQLEYSYLLTSQL 416
Query: 247 ETQRQYYESLL-------AEAKSKRESLIPETVEKA--VASKMQDIQNELDI----CEEA 293
E+QR Y+E+ + AE + ++ ET+EK + K+ D+ E C +
Sbjct: 417 ESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQL 476
Query: 294 KKAVA----------DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343
VA ++N L NQ +++ K KE E + +D I +++EQ+RD+
Sbjct: 477 NTKVAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDV 536
Query: 344 TVYIEAQKTLTNM 356
Y+E Q+ + ++
Sbjct: 537 MFYLETQQKINHL 549
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/409 (33%), Positives = 225/409 (55%), Gaps = 47/409 (11%)
Query: 9 DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPP 68
D+ ++Y VLIK Q AD FY NG++F+ E +VC ++++ E + + AS P
Sbjct: 195 DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPV 254
Query: 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD--ERP 126
TELP C +CLER+D +GIL+T+C+HSF C +W +C VCR+C + E
Sbjct: 255 MDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEEN 314
Query: 127 TCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 186
C CG ENLW+CLICG +GCGRY HA +H+++TQH Y++ L ++WDY GDNYVH
Sbjct: 315 KCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVH 374
Query: 187 RLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQL 246
RL SK DGK+V+ +E TC+ K++A+ EY+ LL +QL
Sbjct: 375 RLVASKTDGKIVQ-------YECEGDTCQ------------EEKIDALQLEYSYLLTSQL 415
Query: 247 ETQRQYYESLL-------AEAKSKRESLIPETVEK--AVASKMQDIQNELDI----CEEA 293
E+QR Y+E+ + AE + ++ ET+EK ++ ++ D+ E C +
Sbjct: 416 ESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDSLELRLSDLLKEKQSVERKCTQL 475
Query: 294 KKAVADVNSKLIKNQE----------IMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343
VA ++++L + QE +++ + KE E+ + +D I +++EQ+RD+
Sbjct: 476 NTRVAKLSTELQEEQELNKCLRANQLVLQNQLKEEEKLLKETCAQKDLQITEIQEQLRDV 535
Query: 344 TVYIEAQKTLTNM---TDSDGIKGGTVLPVSYQQSSPTNTRRHKKSSRR 389
Y+E Q+ ++++ T + +G + ++ + P++ K SR+
Sbjct: 536 MFYLETQQQISHLPAETRQEIQEGQINIAMASAPNPPSSGAGGKLQSRK 584
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/406 (34%), Positives = 209/406 (51%), Gaps = 66/406 (16%)
Query: 13 DRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAE---------- 62
+R L+K DQ + FY+ NGK FS + E CH+L + V E
Sbjct: 127 NRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVNIKYPMESSDSSSTEQQ 186
Query: 63 --------IASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQ 114
AST PA ELPTC +CLER+D +G+++ +C H+F C C KW SC
Sbjct: 187 LVGPSSKPFASTTPA-LIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCP 245
Query: 115 VCRFCHQ---QDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDL 171
VCR+ + + + C+VC ++LW+CLICG +GCGRY + HA +H+ DT H Y+++L
Sbjct: 246 VCRYTQKVQSSEFQSKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYAMEL 305
Query: 172 RTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKV 231
TQ++WDY GDNYVHRL QS+ DGKLVE+ S D SG +S
Sbjct: 306 ETQRVWDYAGDNYVHRLLQSETDGKLVEL----------------STDGKSSGWTGSSAT 349
Query: 232 EAIVD-----EYNRLLATQLETQRQYYESLLAEAKSK----RESLIPET-VEKAVASKMQ 281
E+ + EY ++L +QLE+QR YYES L+ K E L+ +T + A ++
Sbjct: 350 ESKLRDKMGLEYTQILVSQLESQRLYYESHLSNMSQKLSRVNEELVLKTKIATASSNANT 409
Query: 282 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE------ITSLRLRDAT--- 332
D+++ +DI E K D ++ E ++ ++E + I +L ++ T
Sbjct: 410 DLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSD 469
Query: 333 --------ILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGT-VLP 369
I DL EQ+RDL I A + + M S+ ++ GT VLP
Sbjct: 470 QIVSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEELQNGTIVLP 515
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 221/415 (53%), Gaps = 65/415 (15%)
Query: 10 AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPA 69
M ++VLIK + L A F NGK FS + E CH++ + + + + ++ P A
Sbjct: 155 GMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEIVFQK--KLFQRPAA 212
Query: 70 G----------FTEL----------PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 109
FT PTCP+CLER+D +T+G+++ C H+F C C KW
Sbjct: 213 NEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWK 272
Query: 110 VLSCQVCR----------FCHQQDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 159
C VCR Q + C+ CG+ +NLW+CLICG VGCGRY HA++H
Sbjct: 273 NSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLICGNVGCGRYNSKHAIKH 332
Query: 160 WKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEM------------NSPCMSH 207
+++T H +++D+RTQ++WDY GDNYVHRL Q++ DGKLVE+ NS + +
Sbjct: 333 YEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNEVDGKLVEVGGSGDDDNNDIGNSDELQN 392
Query: 208 EAHCGTCECSEDS------GISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEA- 260
+ + E S G A F E + EY ++L +QLE+QR+YYE L E
Sbjct: 393 VVYGNRSKNGEKSNSNKKDGELAANFLRHREYHL-EYVQVLISQLESQREYYELKLQEKD 451
Query: 261 KSKRESLIPETVEKAVAS---KMQDIQNELDICEEAKKAVADVNSKLIK----NQEIMRK 313
++ +S E+++K++ + Q Q E E A+K+ + + +I+ N + + K
Sbjct: 452 QTASDSSNVESLKKSMEDLKLQFQVTQKEWQKREMAQKSKLEEDMLVIEGLQANLDHLSK 511
Query: 314 KFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 368
K +++ ERE +L + + DLEEQ++DL Y+++Q+ + +S +K GT+L
Sbjct: 512 KQEQL-ERENKAL---EESKQDLEEQVKDLMFYLDSQEKFKDADES--VKEGTIL 560
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 208 bits (530), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 197/389 (50%), Gaps = 47/389 (12%)
Query: 6 VRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIAS 65
V D ++Y ++IK + A FY N F+ E+ C + F+ +E T ++ S
Sbjct: 189 VVRDPAPNQYMLIIKFKEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTTSNDLFS 248
Query: 66 TPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD-- 123
+ TELPTC +CLER+D +L+ +C+HSF C +W +C VCR+ +
Sbjct: 249 SDDTSLTELPTCAVCLERMD---DSVLAILCNHSFHARCLEQWADNTCPVCRYVQSPEVV 305
Query: 124 ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 183
C+ CG +LW+CLICG +GCGRY E HA RHW+ T H YSL + +++WDY GDN
Sbjct: 306 AEQRCNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHTYSLKVGGERVWDYAGDN 365
Query: 184 YVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLA 243
YVHRL ++ ADGKLVE E++ + ++ G K+E I EY LL
Sbjct: 366 YVHRLIENGADGKLVEYQ-----RESNASFDDKNQKGG-------DKLEGIKLEYTLLLT 413
Query: 244 TQLETQRQYYESL---LAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAK 294
+QLE QR+Y+E L + + SK E VE +++++ ++ +LD A+
Sbjct: 414 SQLEDQRKYFEGLRHDMEQTMSKMEKTAYAQVENLEHQLTERSTELKSLKGDLDDTVTAR 473
Query: 295 KAVA---------------------DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATI 333
K ++N L K+Q++ + + +++ E + T+ + I
Sbjct: 474 KVAEKRATQTNEKVNKLANELKDEREINQMLRKDQQVWKGQVEKLIESQKTARTEYEKKI 533
Query: 334 LDLEEQIRDLTVYIEAQKTLTNMTDSDGI 362
DL+ Q+ DL ++ E Q L D+ I
Sbjct: 534 EDLQSQVNDLLMHFETQNKLKEQLDAGKI 562
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C C T E++W CL C V CGRY E HA++H++++ H +L++ ++ Y+ D+YV
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 188 LNQSKADGKLVEMN-SPCMSHEAHCGT 213
N + D KL+ S S HC T
Sbjct: 89 DN-TTGDLKLLRRTLSAIKSQNYHCTT 114
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C C T E++W CL C V CGRY E HA++H++++ H +L++ ++ Y+ D+YV
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 188 LNQSKADGKLVEMNSPCMSHEAHCGT 213
N + L M S S C T
Sbjct: 89 DNATGDLKLLRSMLSAIKSQNYQCTT 114
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C C T E++W CL C V CGRY E HA++H+K+ H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV-- 83
Query: 188 LNQSKADGKLVEMNSPCMSHEAHC 211
LN + A G L + S + ++ C
Sbjct: 84 LNDN-ATGDLKLLRSTLSAIKSQC 106
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185
C C T E++W CL C V CGRY E HA++H+++T H ++++R ++ Y+ +YV
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185
C C T E+ W CL C V CGRY E HA++H+++T H ++++R ++ Y+ +YV
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C VC T E++W CL C V CG+Y + HA++H++++ H + ++ + Y+ ++YV
Sbjct: 26 CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYV-- 83
Query: 188 LNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVD 236
LN + A G L + S + ++ C DS + +V +++D
Sbjct: 84 LNDNAA-GDLKSLRSTLSTIKSKKYPCVVPSDSVLHPVDAQDRVYSLLD 131
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 186
C C W+C+ CG V C R+ GHA H+++T+H S W Y D YVH
Sbjct: 34 CHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYVH 92
>sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16
PE=2 SV=1
Length = 826
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 87 DTSGILSTICDHSF----QCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVEN--LWVC 140
D+S L +C H Q + + +C+ C ++ S T EN +W+C
Sbjct: 15 DSSESLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEETEENPSVWLC 74
Query: 141 LICGFVGCGR-YKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGK 196
L CG GCGR +E HA++H+ + H L L +W Y+ D+ VH N ++ G+
Sbjct: 75 LKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLCDDEVHYCNSNRL-GQ 133
Query: 197 LVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVE 232
+V+ + +A T E +ED+G + L N K+E
Sbjct: 134 VVDY----VRKQAGNTTPESAEDNG-NIELENKKLE 164
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C CGT++ WVCL C V CGRY GH ++H ++ H L W Y YVH
Sbjct: 1133 CGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 1192
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 124 ERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT 173
+ TCS C ENLW+CL CG + CGR + GHA+ H+ DT H ++ L++
Sbjct: 170 DNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKS 225
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 123 DERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGD 182
+ R CS C +W CL C CGR+ HA+ H + H +L + +W Y D
Sbjct: 870 NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCD 929
Query: 183 NYVH 186
+YVH
Sbjct: 930 SYVH 933
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187
C CGTV+ WVCL C V C RY H V H + ++H L W YV YVH
Sbjct: 1067 CKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHH 1126
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQ 164
CSVC + ++ WVCL C V CGRY GHA +H++D Q
Sbjct: 29 CSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQ 164
CSVC + ++ WVCL C V CGRY GHA +H++D Q
Sbjct: 29 CSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 127 TCSVCGTV-ENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 183
TC CG NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIHAQVKKHNLTVNLTTFRVWCYACER 88
Query: 184 YV---HRL--NQSKADGKLVEMNSPCMSH 207
V RL + + + +L E +SP SH
Sbjct: 89 EVFLEQRLAVHLASSSARLSEQDSPPPSH 117
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 127 TCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 183
TC CG T NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEK 88
Query: 184 YVHRLNQSKA-----DGKLVEMNSPCMSH 207
V L Q A K E +SP SH
Sbjct: 89 EVF-LEQRLAAPLLGSSKFSEQDSPPPSH 116
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 127 TCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 183
TC CG T NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEK 88
Query: 184 YV---HRLNQS--KADGKLVEMNSPCMSH 207
V RL + K E +SP SH
Sbjct: 89 EVFLEQRLAAPLLGSSSKFSEQDSPPPSH 117
>sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16
PE=2 SV=1
Length = 815
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 132 GTVENLWVCLICGFVGCGRYKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVHRL 188
G +W+CL CG GCGR HA++H+ + H L L +W Y+ D+ V
Sbjct: 68 GESPAVWMCLKCGHRGCGRSGNQHAIKHYETPRSEPHCLVLSLDVWSVWCYICDDEV--- 124
Query: 189 NQSKADGKLVEM 200
Q + G+L ++
Sbjct: 125 -QYSSTGQLAQL 135
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 128 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 180
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 33 CKVRGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 128 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 180
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 64 CKVQGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 116
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 122 QDERPTCSVCGT-VENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWD 178
Q + TC C NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W
Sbjct: 24 QKSQGTCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC 83
Query: 179 YV 180
Y
Sbjct: 84 YA 85
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 127 TCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 183
TC CG + NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQAKKHNLTVNLTTFRVWCYACEK 88
Query: 184 YVH---RL--NQSKADGKLVEMNSPCMSH 207
V RL + K E +SP SH
Sbjct: 89 EVFLEPRLAAHPPGPAPKFSEQDSPPPSH 117
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 128 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 180
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 33 CKVRGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 131 CGTVENLWVCLICGFVGCGR-YKE-----GHAVRHWKDTQHWYSLDLRT-----QQIWDY 179
C VENLW+ L GF+GCGR Y + GHA H+ TQ+ S+ L T ++ Y
Sbjct: 196 CDKVENLWLNLTDGFIGCGRKYADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSY 255
Query: 180 VGDNYV 185
D+ V
Sbjct: 256 PEDDMV 261
>sp|Q8K387|UBP45_MOUSE Ubiquitin carboxyl-terminal hydrolase 45 OS=Mus musculus GN=Usp45
PE=2 SV=1
Length = 813
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 108 WTVLSCQVC----RFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRYKEG-HAVRHWKD 162
W+V C C RFC Q P ++W+CL CG GCG+ E H++RH+K
Sbjct: 59 WSV--CSECLKERRFCDGQPVLPA--------DVWLCLKCGLQGCGKNSESQHSLRHFKS 108
Query: 163 T---QHWYSLDLRTQQIWDY 179
+ H + L T IW Y
Sbjct: 109 SGTESHCVVISLSTWVIWCY 128
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 122 QDERPTCSVCGTV-ENLWVCLIC--GFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWD 178
Q + TC CG NLW CL C +VGCG H+ H + +H +++L T ++W
Sbjct: 24 QKSKGTCQSCGVGGPNLWACLQCDCPYVGCGESYSDHSTIHAQAKKHNLTVNLTTFRVWC 83
Query: 179 YV 180
YV
Sbjct: 84 YV 85
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16
PE=1 SV=1
Length = 823
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 137 LWVCLICGFVGCGR-YKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYV 185
+W+CL CG GCGR +E HA++H+ + H L L +W YV DN V
Sbjct: 71 VWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEV 123
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYKEG-----HAVRHWKDTQH 165
CS C +NLW+CL CG +GCGR + G HA+ H++ +
Sbjct: 192 CSSCDLTQNLWLCLHCGNIGCGREQIGIDGHSHALDHYRSNNN 234
>sp|Q4R6X7|UBP16_MACFA Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis
GN=USP16 PE=2 SV=2
Length = 826
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 137 LWVCLICGFVGCGR-YKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYV 185
+W+CL CG GCGR +E HA++H+ + H L L +W Y+ DN V
Sbjct: 71 VWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEV 123
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 128 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDY 179
C V G NLW CL C +VGCG H+ H +DT+H +++L T ++W Y
Sbjct: 33 CRVRGP--NLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWCY 84
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 136 NLWVCLICGFVGCGRYKEG-HAVRHWKDTQ---HWYSLDLRTQQIWDY 179
++W+CL CGF GCG+ E H+++H+K ++ H ++L T IW Y
Sbjct: 81 DIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 128 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 180
C V G NLW CL C +VGCG H+ H ++T+H +++L T ++W Y
Sbjct: 34 CKVGGP--NLWACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYA 86
>sp|Q99LG0|UBP16_MOUSE Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16
PE=1 SV=1
Length = 825
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 106 AKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGR-YKEGHAVRHW---K 161
+W + CQ C+ ++ ++P ++W+CL CG GCGR +E HA++H+ +
Sbjct: 43 VEWNI--CQDCKTDNKVKDKPEEE--AEDPSVWLCLKCGHQGCGRDSQEQHALKHYTTPR 98
Query: 162 DTQHWYSLDLRTQQIWDYVGDNYV 185
H+ L L +W Y D V
Sbjct: 99 SEPHYLVLSLDNWSVWCYKCDEEV 122
>sp|Q0VA64|UBP16_XENTR Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis
GN=usp16 PE=2 SV=1
Length = 864
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 107 KWTVLSCQVCRFCHQQDERPTCSVCGTVEN--LWVCLICGFVGCGRYKEG-HAVRHW--- 160
+WTV C+ C ++ S VE+ +W+CL CG GCGR HA+ H+
Sbjct: 41 EWTV-----CQECQADNKEKNNSDDELVEDPSVWLCLKCGHRGCGRNSASQHALNHYNTP 95
Query: 161 KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVE 199
+ H L + W Y+ DN V N+S G+LV+
Sbjct: 96 RSEPHCLVLSMDMWSAWCYLCDNEVP-YNRSSRLGQLVD 133
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 181
CS C ENLW+ L G + CGR+ GHA+ H K Q Y L +R I
Sbjct: 192 CSKCDLQENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHK--QMGYPLAVRLGSITPDGA 249
Query: 182 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 241
D Y ++ D L + H AH G + + G + +++V+ V+E+ +
Sbjct: 250 DVYSFDEEEAVIDPHLAK-------HLAHFG-IDMLQMQGSENGVLDNEVKPRVNEWEVI 301
Query: 242 LATQLETQRQY 252
T L+ + +
Sbjct: 302 QETGLKLKPMF 312
>sp|Q2KJ09|UBP16_RAT Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus
GN=Usp16 PE=2 SV=2
Length = 826
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 136 NLWVCLICGFVGCGR-YKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYV 185
++W+CL CG GCGR +E HA++H+ + H+ L L +W Y D +
Sbjct: 69 SVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCDEEI 122
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRTQQIWDYVG 181
CS C ENLW+ L G + CGR HAV H+K+T + ++ L T
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239
Query: 182 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCG 212
D Y + + S D L E H AH G
Sbjct: 240 DVYSYPEDDSVLDPLLAE-------HLAHFG 263
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 181
C+ C ENLW+ L G V CG++ GHA+ H++DT Y L ++ I
Sbjct: 211 CARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDTG--YPLAVKLGTITPDGA 268
Query: 182 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 241
D Y + ++ D L + H AH G + G L ++ ++ V E+ +
Sbjct: 269 DVYSFQEEEAVLDPHLAK-------HLAHFG-IDMLHMHGTENGLQDNDIKPRVSEWEVI 320
Query: 242 LATQLETQRQY 252
T + + Y
Sbjct: 321 QETGTKLKPMY 331
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 128 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRT 173
CS C ENLW+ L G V CG++ GHA+ H+K+T + ++ L T
Sbjct: 206 CSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHAMEHYKETGYPLAVKLGT 257
>sp|Q6PAW2|UBP16_XENLA Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus laevis GN=usp16
PE=2 SV=1
Length = 901
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 106 AKWTVLSCQVCRFCHQQDERPTCSVCGTVEN--LWVCLICGFVGCGRYKEG-HAVRHW-- 160
+WT+ C+ C ++ S + E+ +W+CL CG GCGR HA+ H+
Sbjct: 40 VEWTM-----CQDCQADNKEKNNSEDESAEDPSVWLCLKCGHRGCGRNSVAQHALNHYNT 94
Query: 161 -KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVE 199
+ H L++ W Y+ DN V N++ G+LV+
Sbjct: 95 PRSEPHCLVLNVDMWSAWCYLCDNEV-PYNRTSRLGQLVD 133
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 128 CSVCGTVENLWVCLICGFVGCG-RYKEG-----HAVRHWKDTQHWYSLDLRT 173
CS C ENLW+ L G + CG RY +G HAV H+++T + ++ L T
Sbjct: 199 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGT 250
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 128 CSVCGTVENLWVCLICGFVGCG-RYKEG-----HAVRHWKDTQHWYSLDLRT 173
CS C ENLW+ L G + CG RY +G HAV H+++T + ++ L T
Sbjct: 199 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGT 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,628,136
Number of Sequences: 539616
Number of extensions: 5694723
Number of successful extensions: 21679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 21450
Number of HSP's gapped (non-prelim): 616
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)