Query 016340
Match_columns 391
No_of_seqs 267 out of 2042
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 100.0 3E-106 6E-111 796.5 31.7 367 2-390 104-492 (493)
2 PF07576 BRAP2: BRCA1-associat 99.9 1.2E-23 2.5E-28 177.5 8.4 67 2-69 43-109 (110)
3 PF02148 zf-UBP: Zn-finger in 99.6 2.7E-17 5.8E-22 125.6 -0.1 60 128-187 1-61 (63)
4 KOG0944 Ubiquitin-specific pro 99.3 4.3E-13 9.4E-18 139.9 2.6 64 122-185 176-250 (763)
5 COG5207 UBP14 Isopeptidase T [ 99.2 3.5E-12 7.6E-17 129.7 3.4 62 124-185 172-243 (749)
6 KOG0804 Cytoplasmic Zn-finger 99.1 1.4E-09 3E-14 109.6 16.2 18 13-30 74-91 (493)
7 smart00290 ZnF_UBP Ubiquitin C 99.1 4.5E-11 9.7E-16 86.7 1.6 49 127-175 1-49 (50)
8 cd02669 Peptidase_C19M A subfa 98.9 7.4E-10 1.6E-14 114.6 2.7 61 125-185 16-76 (440)
9 KOG1873 Ubiquitin-specific pro 98.7 2.8E-09 6.1E-14 112.9 0.5 90 96-185 45-145 (877)
10 PF13639 zf-RING_2: Ring finge 98.7 4.6E-09 1E-13 74.2 0.3 41 76-117 2-44 (44)
11 PF15227 zf-C3HC4_4: zinc fing 98.6 1.3E-08 2.7E-13 71.6 1.2 36 77-116 1-42 (42)
12 PHA02929 N1R/p28-like protein; 98.3 4.7E-07 1E-11 86.4 2.9 48 73-120 173-226 (238)
13 PLN03208 E3 ubiquitin-protein 98.3 4.8E-07 1.1E-11 83.3 2.7 45 72-120 16-78 (193)
14 KOG4628 Predicted E3 ubiquitin 98.2 8.9E-07 1.9E-11 88.3 3.1 56 75-131 230-288 (348)
15 PF12678 zf-rbx1: RING-H2 zinc 98.2 7.6E-07 1.7E-11 69.9 2.1 44 74-117 19-73 (73)
16 PF13923 zf-C3HC4_2: Zinc fing 98.1 7.3E-07 1.6E-11 61.3 0.5 37 77-116 1-39 (39)
17 PHA02926 zinc finger-like prot 98.1 1.5E-06 3.2E-11 81.3 1.7 48 72-120 168-229 (242)
18 PF14634 zf-RING_5: zinc-RING 98.0 2.7E-06 5.8E-11 60.2 2.2 42 76-118 1-44 (44)
19 TIGR00599 rad18 DNA repair pro 98.0 2.1E-06 4.6E-11 87.4 2.0 47 70-120 22-70 (397)
20 PF13920 zf-C3HC4_3: Zinc fing 98.0 2.4E-06 5.1E-11 61.9 1.3 43 73-119 1-46 (50)
21 KOG2177 Predicted E3 ubiquitin 98.0 4.7E-06 1E-10 78.7 3.2 44 70-117 9-54 (386)
22 PF00097 zf-C3HC4: Zinc finger 97.9 2.6E-06 5.6E-11 58.9 0.5 37 77-116 1-41 (41)
23 cd00162 RING RING-finger (Real 97.9 5.7E-06 1.2E-10 56.9 1.8 40 76-118 1-43 (45)
24 COG5540 RING-finger-containing 97.9 4.9E-06 1.1E-10 80.7 1.8 47 74-121 323-372 (374)
25 TIGR00570 cdk7 CDK-activating 97.9 0.00026 5.7E-09 69.8 13.8 46 74-120 3-53 (309)
26 KOG0317 Predicted E3 ubiquitin 97.8 7.8E-06 1.7E-10 79.0 2.1 52 67-122 231-285 (293)
27 KOG0823 Predicted E3 ubiquitin 97.8 9.1E-06 2E-10 76.4 1.7 43 74-120 47-94 (230)
28 smart00504 Ubox Modified RING 97.8 1.6E-05 3.4E-10 59.7 2.4 42 75-120 2-45 (63)
29 smart00184 RING Ring finger. E 97.7 1.7E-05 3.7E-10 52.5 2.0 36 77-116 1-39 (39)
30 KOG0320 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 72.2 1.7 44 73-118 130-175 (187)
31 PF14835 zf-RING_6: zf-RING of 97.7 2.2E-05 4.8E-10 59.8 2.3 44 72-118 5-48 (65)
32 PF13445 zf-RING_UBOX: RING-ty 97.7 1.1E-05 2.4E-10 57.0 0.4 32 77-109 1-32 (43)
33 COG5432 RAD18 RING-finger-cont 97.5 3E-05 6.5E-10 75.0 0.7 47 70-120 21-69 (391)
34 KOG2164 Predicted E3 ubiquitin 97.5 5.5E-05 1.2E-09 78.2 2.3 45 74-122 186-237 (513)
35 PF12861 zf-Apc11: Anaphase-pr 97.4 7.1E-05 1.5E-09 60.3 2.0 47 74-120 21-81 (85)
36 KOG0287 Postreplication repair 97.4 2.6E-05 5.5E-10 76.8 -1.3 48 70-121 19-68 (442)
37 KOG0825 PHD Zn-finger protein 97.1 0.00011 2.4E-09 78.9 0.2 46 74-120 123-170 (1134)
38 KOG0802 E3 ubiquitin ligase [P 96.9 0.00023 4.9E-09 76.0 0.3 46 74-119 291-339 (543)
39 COG5574 PEX10 RING-finger-cont 96.8 0.0004 8.7E-09 66.6 1.0 43 74-120 215-261 (271)
40 KOG0978 E3 ubiquitin ligase in 96.8 0.00021 4.5E-09 77.1 -1.2 49 70-122 639-690 (698)
41 PF04564 U-box: U-box domain; 96.8 0.00042 9E-09 54.3 0.7 42 73-118 3-47 (73)
42 COG5243 HRD1 HRD ubiquitin lig 96.7 0.00063 1.4E-08 68.0 1.4 47 73-119 286-343 (491)
43 PF00038 Filament: Intermediat 96.6 0.19 4.1E-06 49.5 18.1 110 227-338 167-276 (312)
44 COG5194 APC11 Component of SCF 96.1 0.003 6.6E-08 50.1 1.9 47 74-120 31-80 (88)
45 KOG1039 Predicted E3 ubiquitin 95.9 0.0031 6.8E-08 63.4 1.3 47 72-119 159-219 (344)
46 KOG1734 Predicted RING-contain 95.9 0.0031 6.7E-08 60.7 1.1 49 71-119 221-279 (328)
47 KOG0311 Predicted E3 ubiquitin 95.9 0.0004 8.7E-09 69.0 -5.0 48 69-119 38-88 (381)
48 KOG0824 Predicted E3 ubiquitin 95.8 0.0038 8.2E-08 61.1 1.4 44 73-120 6-52 (324)
49 smart00744 RINGv The RING-vari 95.8 0.0046 1E-07 44.8 1.6 40 76-117 1-49 (49)
50 KOG0828 Predicted E3 ubiquitin 95.8 0.0024 5.2E-08 66.0 -0.2 46 74-119 571-632 (636)
51 KOG0827 Predicted E3 ubiquitin 95.8 0.003 6.5E-08 63.6 0.5 42 75-117 5-52 (465)
52 PF11793 FANCL_C: FANCL C-term 95.4 0.0059 1.3E-07 47.5 0.9 46 74-119 2-64 (70)
53 PF07227 DUF1423: Protein of u 95.0 1.4 3.1E-05 45.7 16.9 66 97-183 122-191 (446)
54 COG1579 Zn-ribbon protein, pos 95.0 2.2 4.8E-05 41.1 17.2 81 275-355 93-188 (239)
55 PF00038 Filament: Intermediat 94.9 1.8 3.8E-05 42.6 17.0 110 242-351 167-282 (312)
56 KOG1645 RING-finger-containing 94.8 0.012 2.6E-07 59.8 1.2 44 75-118 5-53 (463)
57 KOG4367 Predicted Zn-finger pr 94.3 4.6 0.0001 41.9 18.1 33 72-108 2-34 (699)
58 PF11789 zf-Nse: Zinc-finger o 94.2 0.02 4.4E-07 42.8 1.0 41 72-115 9-53 (57)
59 KOG4159 Predicted E3 ubiquitin 94.1 0.021 4.5E-07 58.7 1.2 46 71-120 81-128 (398)
60 KOG0297 TNF receptor-associate 94.1 0.032 7E-07 57.3 2.6 46 71-119 18-65 (391)
61 KOG2879 Predicted E3 ubiquitin 93.5 0.066 1.4E-06 51.9 3.4 46 72-120 237-286 (298)
62 COG5219 Uncharacterized conser 93.4 0.017 3.7E-07 63.9 -1.0 47 74-120 1469-1522(1525)
63 KOG1493 Anaphase-promoting com 93.1 0.014 3E-07 46.1 -1.6 26 95-120 50-80 (84)
64 PF12325 TMF_TATA_bd: TATA ele 93.0 3.5 7.7E-05 35.5 12.9 42 306-347 68-112 (120)
65 KOG0161 Myosin class II heavy 92.3 6 0.00013 48.3 17.8 120 233-352 1418-1547(1930)
66 PF05883 Baculo_RING: Baculovi 92.3 0.046 1E-06 47.8 0.4 35 74-109 26-66 (134)
67 COG5152 Uncharacterized conser 92.2 0.038 8.2E-07 51.2 -0.2 29 75-107 197-225 (259)
68 KOG2660 Locus-specific chromos 92.1 0.027 5.9E-07 55.8 -1.4 48 70-120 11-60 (331)
69 PF06785 UPF0242: Uncharacteri 92.1 4.7 0.0001 40.5 13.9 74 276-353 139-223 (401)
70 PF10212 TTKRSYEDQ: Predicted 91.7 3.3 7.1E-05 43.9 13.2 92 250-350 415-506 (518)
71 PF10367 Vps39_2: Vacuolar sor 91.6 0.11 2.4E-06 42.7 1.9 34 71-106 75-108 (109)
72 PF14570 zf-RING_4: RING/Ubox 90.9 0.13 2.9E-06 37.2 1.5 43 77-119 1-46 (48)
73 PF06005 DUF904: Protein of un 90.8 4.8 0.0001 31.6 10.3 46 276-321 23-68 (72)
74 PRK09039 hypothetical protein; 90.5 12 0.00027 37.8 15.7 61 280-340 139-199 (343)
75 KOG1940 Zn-finger protein [Gen 90.3 0.13 2.8E-06 50.3 1.3 45 74-118 158-204 (276)
76 KOG3002 Zn finger protein [Gen 90.1 0.23 4.9E-06 49.3 2.9 108 69-189 43-188 (299)
77 KOG1941 Acetylcholine receptor 90.0 0.08 1.7E-06 53.7 -0.4 47 74-120 365-415 (518)
78 KOG1655 Protein involved in va 89.9 8.3 0.00018 36.0 12.5 98 242-345 34-140 (218)
79 PF12718 Tropomyosin_1: Tropom 89.9 13 0.00029 32.8 13.7 32 308-343 110-141 (143)
80 COG1579 Zn-ribbon protein, pos 89.7 20 0.00044 34.5 15.7 28 230-261 14-41 (239)
81 KOG0977 Nuclear envelope prote 89.4 2.9 6.3E-05 44.7 10.6 58 290-347 308-365 (546)
82 KOG3759 Uncharacterized RUN do 89.2 4.2 9.1E-05 42.4 11.1 42 308-349 204-245 (621)
83 COG5222 Uncharacterized conser 89.1 0.14 3.1E-06 50.2 0.6 41 75-118 275-318 (427)
84 KOG0250 DNA repair protein RAD 89.0 19 0.00042 41.3 17.0 49 275-323 391-439 (1074)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.0 14 0.00031 31.9 15.7 68 278-349 59-130 (132)
86 KOG4445 Uncharacterized conser 88.9 0.075 1.6E-06 52.2 -1.5 34 74-108 115-148 (368)
87 KOG1813 Predicted E3 ubiquitin 88.8 0.18 3.8E-06 49.5 1.0 39 76-118 243-283 (313)
88 KOG2930 SCF ubiquitin ligase, 88.8 0.12 2.6E-06 43.2 -0.2 24 95-118 80-105 (114)
89 PF04641 Rtf2: Rtf2 RING-finge 88.7 0.52 1.1E-05 45.7 4.2 49 72-120 111-160 (260)
90 PF10211 Ax_dynein_light: Axon 88.6 17 0.00038 33.6 14.1 22 327-348 166-187 (189)
91 KOG4739 Uncharacterized protei 88.6 7.6 0.00016 37.2 11.8 42 76-119 5-46 (233)
92 KOG1785 Tyrosine kinase negati 88.4 0.053 1.1E-06 55.0 -2.9 87 28-120 325-415 (563)
93 KOG2114 Vacuolar assembly/sort 88.4 0.22 4.8E-06 54.9 1.5 42 73-118 839-880 (933)
94 TIGR03825 FliH_bacil flagellar 88.2 16 0.00035 35.2 14.1 97 251-347 40-145 (255)
95 PF09731 Mitofilin: Mitochondr 87.8 27 0.00058 37.6 17.0 22 231-252 267-288 (582)
96 KOG3039 Uncharacterized conser 87.5 0.3 6.5E-06 46.9 1.6 46 73-118 220-267 (303)
97 COG5175 MOT2 Transcriptional r 87.5 0.22 4.8E-06 49.7 0.8 48 73-120 13-63 (480)
98 PF07888 CALCOCO1: Calcium bin 87.4 36 0.00078 36.7 17.1 17 227-243 141-157 (546)
99 PHA02562 46 endonuclease subun 87.4 36 0.00079 36.1 17.6 19 243-261 308-326 (562)
100 TIGR03007 pepcterm_ChnLen poly 86.1 16 0.00036 38.3 14.0 78 221-298 134-224 (498)
101 KOG2932 E3 ubiquitin ligase in 85.8 0.24 5.2E-06 48.9 -0.0 51 93-151 106-156 (389)
102 KOG0579 Ste20-like serine/thre 85.7 34 0.00074 37.8 15.8 47 236-283 811-857 (1187)
103 PF08317 Spc7: Spc7 kinetochor 85.7 39 0.00085 33.8 15.8 30 326-355 239-268 (325)
104 PF10168 Nup88: Nuclear pore c 85.5 34 0.00074 38.1 16.5 12 332-343 640-651 (717)
105 KOG1001 Helicase-like transcri 85.3 0.39 8.4E-06 52.8 1.3 41 75-120 455-499 (674)
106 COG4026 Uncharacterized protei 85.2 17 0.00036 34.8 11.8 36 285-320 142-177 (290)
107 KOG0982 Centrosomal protein Nu 85.2 43 0.00092 35.0 15.5 64 235-298 249-317 (502)
108 KOG1952 Transcription factor N 85.2 0.42 9.1E-06 52.8 1.5 45 73-120 190-246 (950)
109 PF09738 DUF2051: Double stran 84.5 15 0.00032 36.7 11.9 85 256-347 85-170 (302)
110 PRK11637 AmiB activator; Provi 84.5 13 0.00029 38.4 12.2 13 332-344 118-130 (428)
111 PF11932 DUF3450: Protein of u 84.4 34 0.00073 32.8 14.2 18 336-353 147-164 (251)
112 TIGR02449 conserved hypothetic 84.4 13 0.00029 28.6 9.0 43 280-322 2-44 (65)
113 KOG1103 Predicted coiled-coil 84.2 7.6 0.00017 39.3 9.6 36 307-346 253-288 (561)
114 PF07888 CALCOCO1: Calcium bin 84.2 27 0.00058 37.6 14.2 27 297-323 204-230 (546)
115 PRK00409 recombination and DNA 84.1 29 0.00064 39.0 15.4 23 242-264 521-543 (782)
116 PF15070 GOLGA2L5: Putative go 84.0 72 0.0016 35.0 18.5 33 231-264 6-38 (617)
117 KOG1002 Nucleotide excision re 84.0 0.27 5.8E-06 51.8 -0.6 43 72-118 534-583 (791)
118 smart00787 Spc7 Spc7 kinetocho 83.9 39 0.00085 33.8 14.7 11 246-256 128-138 (312)
119 KOG4005 Transcription factor X 83.8 23 0.00049 34.1 12.1 43 279-321 98-140 (292)
120 PRK08476 F0F1 ATP synthase sub 83.7 30 0.00064 30.4 13.3 23 242-264 53-75 (141)
121 COG3937 Uncharacterized conser 83.5 16 0.00034 30.9 9.8 17 328-344 87-103 (108)
122 KOG0971 Microtubule-associated 83.5 25 0.00054 39.9 13.9 33 278-310 455-490 (1243)
123 PF11068 YlqD: YlqD protein; 83.4 18 0.00039 31.6 10.7 38 328-368 64-101 (131)
124 PRK12704 phosphodiesterase; Pr 83.4 58 0.0013 34.9 16.6 11 361-371 205-215 (520)
125 TIGR03752 conj_TIGR03752 integ 83.2 13 0.00028 39.1 11.3 72 278-349 66-141 (472)
126 PRK09039 hypothetical protein; 83.1 32 0.00068 34.9 13.8 41 304-344 142-185 (343)
127 PF11559 ADIP: Afadin- and alp 82.9 32 0.0007 30.2 15.8 57 285-341 94-150 (151)
128 PRK10361 DNA recombination pro 82.7 45 0.00097 35.4 15.1 15 305-319 146-160 (475)
129 KOG0995 Centromere-associated 82.5 32 0.00069 37.1 13.8 14 33-46 13-26 (581)
130 PF13851 GAS: Growth-arrest sp 82.4 43 0.00093 31.3 15.0 23 229-251 9-31 (201)
131 COG1196 Smc Chromosome segrega 82.2 57 0.0012 38.4 17.3 17 332-348 468-484 (1163)
132 KOG3161 Predicted E3 ubiquitin 82.0 0.23 4.9E-06 53.3 -2.1 48 70-118 7-54 (861)
133 KOG0161 Myosin class II heavy 81.7 82 0.0018 39.1 18.4 73 283-355 962-1037(1930)
134 COG5185 HEC1 Protein involved 81.7 45 0.00097 35.3 14.2 16 337-352 388-403 (622)
135 KOG1571 Predicted E3 ubiquitin 81.6 0.7 1.5E-05 46.6 1.3 41 73-119 304-345 (355)
136 PF04111 APG6: Autophagy prote 81.5 23 0.00049 35.5 12.0 14 248-261 23-36 (314)
137 PF06160 EzrA: Septation ring 81.3 84 0.0018 33.9 17.1 32 228-263 59-90 (560)
138 KOG0964 Structural maintenance 80.8 62 0.0013 37.2 15.8 112 243-355 757-899 (1200)
139 COG2433 Uncharacterized conser 80.7 33 0.00072 37.3 13.2 16 361-376 541-556 (652)
140 KOG4265 Predicted E3 ubiquitin 80.5 0.76 1.6E-05 46.3 1.1 43 74-120 290-335 (349)
141 KOG1853 LIS1-interacting prote 80.4 59 0.0013 31.7 13.6 25 331-355 164-188 (333)
142 PF09304 Cortex-I_coil: Cortex 80.3 32 0.00069 29.1 10.5 36 291-326 36-71 (107)
143 KOG4185 Predicted E3 ubiquitin 80.1 1 2.2E-05 44.1 1.9 47 74-120 3-54 (296)
144 PF11932 DUF3450: Protein of u 79.9 37 0.00079 32.5 12.6 18 331-348 109-127 (251)
145 PF10046 BLOC1_2: Biogenesis o 79.9 33 0.00071 28.3 12.6 64 275-342 32-98 (99)
146 KOG1962 B-cell receptor-associ 79.8 27 0.00059 33.2 11.1 9 332-340 201-209 (216)
147 PF15619 Lebercilin: Ciliary p 79.7 19 0.00042 33.5 10.1 14 329-342 94-107 (194)
148 KOG3970 Predicted E3 ubiquitin 79.7 0.94 2E-05 43.0 1.4 46 72-119 48-103 (299)
149 KOG0996 Structural maintenance 79.6 80 0.0017 37.0 16.4 78 279-356 943-1024(1293)
150 TIGR01010 BexC_CtrB_KpsE polys 79.5 57 0.0012 32.8 14.4 23 243-265 165-187 (362)
151 PHA02562 46 endonuclease subun 79.2 39 0.00084 35.8 13.7 18 246-263 304-321 (562)
152 PF06705 SF-assemblin: SF-asse 79.0 62 0.0013 30.9 14.6 12 250-261 29-40 (247)
153 PF10226 DUF2216: Uncharacteri 78.9 51 0.0011 30.7 12.2 40 304-351 106-145 (195)
154 PF09726 Macoilin: Transmembra 78.7 81 0.0018 35.2 16.1 23 324-346 636-658 (697)
155 PRK10884 SH3 domain-containing 78.6 38 0.00083 31.8 11.9 38 279-316 119-156 (206)
156 PF12325 TMF_TATA_bd: TATA ele 78.6 43 0.00092 28.9 14.3 23 242-264 24-46 (120)
157 PRK10884 SH3 domain-containing 78.4 38 0.00083 31.9 11.8 7 361-367 179-185 (206)
158 TIGR02894 DNA_bind_RsfA transc 78.2 43 0.00094 30.4 11.4 52 299-354 104-155 (161)
159 TIGR03319 YmdA_YtgF conserved 78.0 1E+02 0.0022 33.0 16.7 14 360-373 198-211 (514)
160 PF06825 HSBP1: Heat shock fac 77.7 11 0.00024 28.0 6.2 20 326-345 30-49 (54)
161 COG2433 Uncharacterized conser 77.6 27 0.00059 37.9 11.5 41 279-319 423-463 (652)
162 PF09728 Taxilin: Myosin-like 77.4 81 0.0018 31.5 15.8 28 227-254 20-47 (309)
163 PF14662 CCDC155: Coiled-coil 77.2 63 0.0014 30.1 15.4 25 320-344 168-192 (193)
164 PRK04778 septation ring format 77.2 77 0.0017 34.3 15.3 33 228-264 63-95 (569)
165 PF09602 PhaP_Bmeg: Polyhydrox 77.1 58 0.0013 29.7 12.9 17 331-347 85-101 (165)
166 KOG2077 JNK/SAPK-associated pr 77.1 18 0.0004 38.9 10.0 80 281-368 353-446 (832)
167 PF11180 DUF2968: Protein of u 76.7 65 0.0014 30.0 13.6 31 233-263 97-127 (192)
168 KOG0288 WD40 repeat protein Ti 76.6 43 0.00093 34.8 12.2 6 340-345 133-138 (459)
169 PF08581 Tup_N: Tup N-terminal 76.4 38 0.00081 27.1 11.0 32 309-340 42-73 (79)
170 PRK15422 septal ring assembly 76.3 36 0.00079 27.2 9.1 40 279-318 33-72 (79)
171 KOG2002 TPR-containing nuclear 76.1 73 0.0016 36.5 14.7 23 334-356 875-897 (1018)
172 KOG4172 Predicted E3 ubiquitin 75.8 0.5 1.1E-05 35.1 -1.3 41 75-119 8-52 (62)
173 PF14447 Prok-RING_4: Prokaryo 75.7 1.5 3.3E-05 32.6 1.2 29 92-120 21-49 (55)
174 PF09726 Macoilin: Transmembra 75.5 76 0.0016 35.4 14.8 12 329-340 564-575 (697)
175 TIGR02132 phaR_Bmeg polyhydrox 75.5 68 0.0015 29.6 13.7 28 235-263 34-61 (189)
176 PF12718 Tropomyosin_1: Tropom 75.4 58 0.0013 28.8 14.8 48 276-323 40-90 (143)
177 TIGR01069 mutS2 MutS2 family p 74.8 58 0.0013 36.7 13.9 32 232-264 507-538 (771)
178 PF09730 BicD: Microtubule-ass 74.8 93 0.002 34.8 15.1 46 276-321 638-683 (717)
179 PF09731 Mitofilin: Mitochondr 74.6 1.3E+02 0.0028 32.4 18.6 31 228-259 250-280 (582)
180 PF15466 DUF4635: Domain of un 74.5 5.9 0.00013 34.0 4.6 20 330-349 104-123 (135)
181 COG2888 Predicted Zn-ribbon RN 74.1 1.3 2.9E-05 33.4 0.6 34 110-147 27-60 (61)
182 KOG0996 Structural maintenance 73.9 1.9E+02 0.0041 34.1 18.0 28 234-261 311-340 (1293)
183 PF05700 BCAS2: Breast carcino 73.8 81 0.0018 29.8 14.2 36 308-343 170-208 (221)
184 PF00261 Tropomyosin: Tropomyo 73.8 84 0.0018 29.9 18.3 17 332-348 198-214 (237)
185 PHA02825 LAP/PHD finger-like p 73.8 2.2 4.8E-05 38.5 2.0 44 72-120 6-58 (162)
186 KOG4692 Predicted E3 ubiquitin 73.7 1.5 3.2E-05 44.3 1.0 45 72-120 420-466 (489)
187 KOG0995 Centromere-associated 73.7 76 0.0017 34.3 13.6 27 327-353 488-514 (581)
188 PF15254 CCDC14: Coiled-coil d 73.7 1E+02 0.0022 34.7 14.7 45 299-344 502-549 (861)
189 KOG3800 Predicted E3 ubiquitin 73.5 1.7 3.7E-05 42.7 1.3 42 76-118 2-48 (300)
190 PF12906 RINGv: RING-variant d 72.7 1.8 4E-05 30.9 1.0 38 77-116 1-47 (47)
191 KOG0971 Microtubule-associated 72.5 1.6E+02 0.0034 33.9 15.9 21 301-321 327-347 (1243)
192 KOG4848 Extracellular matrix-a 72.5 85 0.0018 29.4 14.7 65 230-296 100-164 (225)
193 COG3074 Uncharacterized protei 72.5 38 0.00083 26.5 8.2 38 279-316 33-70 (79)
194 PF04059 RRM_2: RNA recognitio 72.3 5.7 0.00012 33.0 4.0 35 17-51 48-83 (97)
195 PHA03096 p28-like protein; Pro 72.1 1.4 3E-05 43.5 0.4 34 75-109 179-217 (284)
196 KOG4643 Uncharacterized coiled 72.1 2E+02 0.0043 33.4 16.8 14 239-252 372-385 (1195)
197 PRK14890 putative Zn-ribbon RN 71.0 1.8 3.8E-05 32.7 0.6 34 110-147 25-58 (59)
198 PF15066 CAGE1: Cancer-associa 70.9 1.3E+02 0.0027 32.0 14.0 23 242-264 332-354 (527)
199 PF10168 Nup88: Nuclear pore c 70.7 1.8E+02 0.004 32.5 17.4 30 322-351 637-666 (717)
200 PF06632 XRCC4: DNA double-str 70.6 47 0.001 33.7 10.9 15 280-294 160-174 (342)
201 KOG3799 Rab3 effector RIM1 and 70.5 2.6 5.5E-05 37.0 1.6 19 68-86 59-78 (169)
202 PF13893 RRM_5: RNA recognitio 70.4 6.8 0.00015 28.1 3.7 27 14-40 21-47 (56)
203 COG4026 Uncharacterized protei 70.4 58 0.0013 31.2 10.6 46 276-321 161-206 (290)
204 PF09403 FadA: Adhesion protei 70.2 73 0.0016 27.7 15.0 35 311-345 87-121 (126)
205 PF10267 Tmemb_cc2: Predicted 70.2 49 0.0011 34.3 11.0 70 274-343 215-288 (395)
206 KOG1814 Predicted E3 ubiquitin 70.1 1.8 3.9E-05 44.4 0.7 45 73-118 183-237 (445)
207 PF09416 UPF1_Zn_bind: RNA hel 69.6 1.4 3.1E-05 39.5 -0.2 75 127-201 2-89 (152)
208 COG4942 Membrane-bound metallo 69.4 42 0.00091 35.0 10.3 13 281-293 62-74 (420)
209 COG3883 Uncharacterized protei 69.3 1.2E+02 0.0026 29.8 13.1 13 229-241 31-43 (265)
210 PF00076 RRM_1: RNA recognitio 69.1 7.7 0.00017 28.2 3.9 39 3-41 28-66 (70)
211 KOG0298 DEAD box-containing he 69.1 0.94 2E-05 52.3 -1.7 48 70-120 1149-1198(1394)
212 KOG3268 Predicted E3 ubiquitin 68.9 2.2 4.7E-05 39.2 0.9 17 93-109 187-203 (234)
213 KOG1029 Endocytic adaptor prot 68.7 1.1E+02 0.0023 34.5 13.5 13 21-33 31-43 (1118)
214 KOG4593 Mitotic checkpoint pro 68.6 1.8E+02 0.004 32.2 15.3 25 331-355 275-299 (716)
215 KOG2026 Spindle pole body prot 68.5 5.8 0.00013 40.7 3.9 56 125-180 29-85 (442)
216 PF15397 DUF4618: Domain of un 68.4 1.2E+02 0.0027 29.6 16.8 40 314-353 121-160 (258)
217 PF07106 TBPIP: Tat binding pr 67.7 57 0.0012 29.2 9.9 7 231-237 74-80 (169)
218 PF06810 Phage_GP20: Phage min 67.4 80 0.0017 28.3 10.6 16 301-316 53-68 (155)
219 COG3883 Uncharacterized protei 67.1 76 0.0016 31.1 11.1 14 306-319 80-93 (265)
220 PF05791 Bacillus_HBL: Bacillu 67.0 1E+02 0.0022 28.2 12.3 87 250-344 90-176 (184)
221 KOG4362 Transcriptional regula 67.0 1.5 3.3E-05 47.8 -0.5 45 71-119 18-67 (684)
222 PRK04778 septation ring format 66.8 1.4E+02 0.0031 32.2 14.4 41 278-318 383-423 (569)
223 PLN02939 transferase, transfer 66.8 1E+02 0.0022 35.7 13.5 21 244-264 260-280 (977)
224 PF12128 DUF3584: Protein of u 66.2 2.1E+02 0.0045 34.0 16.6 16 332-347 772-787 (1201)
225 PRK09343 prefoldin subunit bet 66.2 84 0.0018 26.9 13.3 40 302-345 74-113 (121)
226 TIGR00606 rad50 rad50. This fa 66.2 2.9E+02 0.0063 33.1 18.1 10 111-120 678-687 (1311)
227 PF02403 Seryl_tRNA_N: Seryl-t 65.7 75 0.0016 26.1 11.9 66 278-347 36-104 (108)
228 PF09789 DUF2353: Uncharacteri 65.2 74 0.0016 32.0 10.9 40 280-319 11-50 (319)
229 TIGR00606 rad50 rad50. This fa 65.0 2.3E+02 0.005 33.9 16.7 13 332-344 903-915 (1311)
230 PF07798 DUF1640: Protein of u 64.9 1.1E+02 0.0024 27.8 16.4 52 241-293 44-95 (177)
231 KOG0825 PHD Zn-finger protein 64.8 2.4 5.3E-05 46.8 0.4 48 73-120 95-153 (1134)
232 PF04849 HAP1_N: HAP1 N-termin 64.5 1.6E+02 0.0035 29.5 14.8 25 331-355 276-301 (306)
233 PF08614 ATG16: Autophagy prot 64.2 1.1E+02 0.0024 28.1 11.4 45 278-322 123-167 (194)
234 PF15070 GOLGA2L5: Putative go 64.2 2.3E+02 0.005 31.2 17.4 12 332-343 161-172 (617)
235 PRK00106 hypothetical protein; 63.6 2.2E+02 0.0048 30.8 16.6 14 360-373 219-232 (535)
236 PF08317 Spc7: Spc7 kinetochor 63.6 1.6E+02 0.0036 29.3 17.2 20 329-348 249-268 (325)
237 KOG0993 Rab5 GTPase effector R 63.5 1.4E+02 0.003 31.2 12.4 50 280-329 136-185 (542)
238 TIGR03185 DNA_S_dndD DNA sulfu 63.2 92 0.002 34.1 12.3 13 332-344 301-313 (650)
239 TIGR01069 mutS2 MutS2 family p 63.2 74 0.0016 35.8 11.6 13 251-263 511-523 (771)
240 PF15397 DUF4618: Domain of un 62.9 1.5E+02 0.0032 29.1 12.1 40 304-343 86-132 (258)
241 PF05701 WEMBL: Weak chloropla 62.6 2.2E+02 0.0048 30.5 16.5 18 245-262 208-225 (522)
242 PF14259 RRM_6: RNA recognitio 62.4 13 0.00028 27.5 4.0 38 3-40 28-65 (70)
243 PF10473 CENP-F_leu_zip: Leuci 62.3 1.1E+02 0.0025 27.0 16.1 44 279-322 60-103 (140)
244 PF04642 DUF601: Protein of un 62.3 61 0.0013 31.5 9.2 39 306-344 259-298 (311)
245 KOG4443 Putative transcription 62.2 3.5 7.6E-05 44.7 1.0 44 75-119 19-71 (694)
246 PF08172 CASP_C: CASP C termin 61.9 53 0.0012 31.8 9.0 16 308-323 88-103 (248)
247 KOG0976 Rho/Rac1-interacting s 61.9 1.3E+02 0.0028 34.1 12.5 17 330-346 350-366 (1265)
248 PF10046 BLOC1_2: Biogenesis o 61.8 90 0.0019 25.7 11.3 45 299-344 42-86 (99)
249 PRK00409 recombination and DNA 61.8 76 0.0017 35.8 11.5 15 249-263 514-528 (782)
250 PF11166 DUF2951: Protein of u 61.8 76 0.0016 26.3 8.4 17 248-264 4-20 (98)
251 KOG2398 Predicted proline-seri 61.5 2.6E+02 0.0055 30.8 16.4 34 229-262 57-90 (611)
252 COG5236 Uncharacterized conser 61.4 3.5 7.7E-05 41.5 0.8 44 73-120 60-107 (493)
253 cd00632 Prefoldin_beta Prefold 61.4 92 0.002 25.7 10.4 11 332-342 92-102 (105)
254 PHA02862 5L protein; Provision 61.3 4.1 8.8E-05 36.3 1.1 41 75-120 3-52 (156)
255 KOG4674 Uncharacterized conser 61.3 1.6E+02 0.0035 36.3 14.2 35 312-346 804-838 (1822)
256 PF04102 SlyX: SlyX; InterPro 61.1 56 0.0012 25.1 7.4 17 331-347 32-48 (69)
257 PF03961 DUF342: Protein of un 60.5 79 0.0017 33.0 10.7 12 332-343 397-408 (451)
258 PRK10698 phage shock protein P 60.5 1.5E+02 0.0034 28.0 15.0 42 282-323 96-137 (222)
259 TIGR02231 conserved hypothetic 60.5 1.6E+02 0.0034 31.4 13.1 13 331-343 152-164 (525)
260 KOG0250 DNA repair protein RAD 60.0 3.4E+02 0.0073 31.8 18.7 37 228-264 660-698 (1074)
261 PRK11519 tyrosine kinase; Prov 59.9 2.8E+02 0.0061 30.8 19.5 41 225-265 244-284 (719)
262 PF06005 DUF904: Protein of un 59.6 84 0.0018 24.6 10.7 47 279-325 19-65 (72)
263 COG4942 Membrane-bound metallo 59.6 1.9E+02 0.0041 30.3 12.9 11 231-241 40-50 (420)
264 PF04912 Dynamitin: Dynamitin 59.4 2.1E+02 0.0046 29.2 13.6 41 303-343 347-387 (388)
265 KOG4673 Transcription factor T 59.4 2.1E+02 0.0046 31.9 13.5 21 328-348 492-512 (961)
266 PF11802 CENP-K: Centromere-as 59.3 1.5E+02 0.0033 29.1 11.6 49 298-348 130-178 (268)
267 KOG0612 Rho-associated, coiled 59.1 3.3E+02 0.0071 32.4 15.6 6 165-170 338-343 (1317)
268 KOG0977 Nuclear envelope prote 59.0 2E+02 0.0043 31.2 13.3 13 250-262 87-99 (546)
269 TIGR01005 eps_transp_fam exopo 58.8 2.9E+02 0.0064 30.7 15.5 127 217-343 163-328 (754)
270 PF05010 TACC: Transforming ac 58.8 1.6E+02 0.0036 27.7 16.5 17 277-293 89-105 (207)
271 PF01920 Prefoldin_2: Prefoldi 58.8 95 0.0021 25.0 10.0 40 299-342 62-101 (106)
272 KOG2891 Surface glycoprotein [ 58.4 2E+02 0.0043 28.6 13.3 10 331-340 407-416 (445)
273 KOG0976 Rho/Rac1-interacting s 58.2 3.3E+02 0.0071 31.1 15.2 24 332-355 460-483 (1265)
274 PF05597 Phasin: Poly(hydroxya 58.2 1.3E+02 0.0028 26.4 10.0 9 251-259 39-47 (132)
275 PF07851 TMPIT: TMPIT-like pro 57.9 1E+02 0.0022 31.2 10.4 6 363-368 94-99 (330)
276 KOG4807 F-actin binding protei 57.9 1.3E+02 0.0029 31.2 11.2 123 227-352 303-456 (593)
277 COG5220 TFB3 Cdk activating ki 57.8 2.4 5.2E-05 40.7 -1.0 36 73-108 9-46 (314)
278 KOG0994 Extracellular matrix g 57.4 4E+02 0.0087 31.8 15.7 27 324-350 1724-1750(1758)
279 PF09744 Jnk-SapK_ap_N: JNK_SA 57.3 1.5E+02 0.0032 26.8 12.9 18 278-295 89-106 (158)
280 KOG1867 Ubiquitin-specific pro 57.3 5.2 0.00011 42.5 1.3 60 125-186 43-104 (492)
281 PF04576 Zein-binding: Zein-bi 57.2 1.1E+02 0.0024 25.3 12.9 26 241-266 3-28 (94)
282 PHA00626 hypothetical protein 57.1 6.7 0.00014 29.3 1.4 32 112-147 2-33 (59)
283 PRK03918 chromosome segregatio 57.0 3.3E+02 0.0071 30.7 15.7 14 248-261 169-182 (880)
284 KOG2391 Vacuolar sorting prote 56.8 1E+02 0.0022 31.3 10.0 37 282-318 243-279 (365)
285 PF13863 DUF4200: Domain of un 56.8 1.2E+02 0.0026 25.5 16.3 23 241-263 11-33 (126)
286 KOG4673 Transcription factor T 56.7 3.2E+02 0.007 30.5 14.9 13 335-347 584-596 (961)
287 PF04899 MbeD_MobD: MbeD/MobD 56.4 95 0.0021 24.3 8.3 58 280-343 1-61 (70)
288 PF03962 Mnd1: Mnd1 family; I 55.9 1.5E+02 0.0031 27.5 10.5 20 185-204 32-51 (188)
289 PRK02224 chromosome segregatio 55.9 3.5E+02 0.0075 30.6 17.5 13 249-261 181-193 (880)
290 PF14723 SSFA2_C: Sperm-specif 55.9 1E+02 0.0023 28.3 9.1 21 328-348 156-176 (179)
291 PRK13729 conjugal transfer pil 55.6 51 0.0011 34.9 8.1 13 328-340 108-120 (475)
292 PF09738 DUF2051: Double stran 55.5 2.3E+02 0.0049 28.4 12.8 22 332-353 148-169 (302)
293 PF14335 DUF4391: Domain of un 55.1 47 0.001 31.3 7.3 32 276-307 180-211 (221)
294 TIGR03545 conserved hypothetic 55.1 1.4E+02 0.0031 32.3 11.7 78 242-319 169-257 (555)
295 KOG0579 Ste20-like serine/thre 55.0 2.7E+02 0.0059 31.2 13.4 86 221-315 1060-1147(1187)
296 PLN02678 seryl-tRNA synthetase 54.5 77 0.0017 33.4 9.4 22 326-347 87-108 (448)
297 PRK02224 chromosome segregatio 54.5 3.6E+02 0.0079 30.4 17.7 18 242-259 181-198 (880)
298 PRK04406 hypothetical protein; 54.4 1.1E+02 0.0023 24.2 8.4 13 331-343 39-51 (75)
299 KOG0933 Structural maintenance 54.2 4.1E+02 0.009 31.0 15.9 35 15-52 17-51 (1174)
300 PF01442 Apolipoprotein: Apoli 54.2 1.5E+02 0.0033 25.9 14.0 17 243-259 44-60 (202)
301 PRK04023 DNA polymerase II lar 54.2 11 0.00024 43.1 3.2 57 89-147 617-673 (1121)
302 PF07106 TBPIP: Tat binding pr 53.8 70 0.0015 28.6 7.9 49 303-351 113-165 (169)
303 KOG1029 Endocytic adaptor prot 53.7 2.3E+02 0.0049 32.2 12.7 28 235-262 376-403 (1118)
304 KOG0826 Predicted E3 ubiquitin 53.6 5.4 0.00012 39.9 0.7 42 74-118 300-343 (357)
305 COG1196 Smc Chromosome segrega 53.5 4.4E+02 0.0096 31.1 18.5 9 252-260 797-805 (1163)
306 KOG1244 Predicted transcriptio 53.5 6.9 0.00015 38.3 1.3 62 73-143 223-302 (336)
307 PF10234 Cluap1: Clusterin-ass 53.4 2.2E+02 0.0049 27.9 11.7 22 272-293 163-184 (267)
308 PF07045 DUF1330: Protein of u 53.4 16 0.00034 27.6 3.1 22 11-32 36-57 (65)
309 PF09304 Cortex-I_coil: Cortex 53.3 1.4E+02 0.003 25.3 11.4 18 332-349 59-76 (107)
310 PRK05431 seryl-tRNA synthetase 53.1 83 0.0018 32.8 9.3 22 326-347 82-103 (425)
311 PF05377 FlaC_arch: Flagella a 53.0 63 0.0014 24.1 6.0 18 331-348 28-45 (55)
312 PF07544 Med9: RNA polymerase 52.4 44 0.00096 26.7 5.7 43 277-323 27-69 (83)
313 KOG1853 LIS1-interacting prote 52.3 2.4E+02 0.0052 27.7 14.9 25 309-333 108-132 (333)
314 KOG0239 Kinesin (KAR3 subfamil 52.1 3.8E+02 0.0082 29.9 14.6 79 276-354 239-323 (670)
315 KOG0999 Microtubule-associated 52.0 3.3E+02 0.0071 29.7 13.2 12 229-240 50-61 (772)
316 cd00590 RRM RRM (RNA recogniti 51.9 31 0.00068 24.4 4.5 29 13-41 39-67 (74)
317 KOG4117 Heat shock factor bind 51.7 92 0.002 24.0 6.8 16 330-345 47-62 (73)
318 PF05911 DUF869: Plant protein 51.7 2.5E+02 0.0055 31.8 13.2 29 278-306 624-652 (769)
319 PF14282 FlxA: FlxA-like prote 51.6 26 0.00056 29.3 4.4 19 327-345 54-72 (106)
320 KOG0993 Rab5 GTPase effector R 51.6 3.1E+02 0.0067 28.7 13.2 23 281-303 110-132 (542)
321 PF10422 LRS4: Monopolin compl 51.5 24 0.00052 34.1 4.6 18 243-260 9-26 (249)
322 PF05290 Baculo_IE-1: Baculovi 51.5 6.3 0.00014 34.6 0.6 48 73-122 79-133 (140)
323 KOG0964 Structural maintenance 51.4 3.4E+02 0.0074 31.6 13.9 28 236-263 179-206 (1200)
324 smart00360 RRM RNA recognition 51.2 32 0.0007 24.0 4.4 28 13-40 37-64 (71)
325 TIGR03185 DNA_S_dndD DNA sulfu 51.0 3.7E+02 0.008 29.5 17.8 11 333-343 504-514 (650)
326 PRK14559 putative protein seri 51.0 13 0.00028 40.9 3.1 53 76-139 3-56 (645)
327 KOG3859 Septins (P-loop GTPase 51.0 2.4E+02 0.0051 28.4 11.3 43 303-345 356-398 (406)
328 PF14916 CCDC92: Coiled-coil d 50.9 31 0.00067 26.2 4.2 33 315-347 12-44 (60)
329 smart00362 RRM_2 RNA recogniti 50.9 29 0.00063 24.4 4.1 37 3-40 29-65 (72)
330 TIGR02894 DNA_bind_RsfA transc 50.8 1E+02 0.0022 28.0 8.2 50 281-330 100-149 (161)
331 KOG0612 Rho-associated, coiled 50.7 3.2E+02 0.007 32.4 13.9 22 286-307 589-610 (1317)
332 KOG1428 Inhibitor of type V ad 50.7 7.3 0.00016 46.1 1.1 44 74-119 3486-3542(3738)
333 TIGR00414 serS seryl-tRNA synt 50.5 98 0.0021 32.2 9.4 22 326-347 85-106 (418)
334 PLN02372 violaxanthin de-epoxi 50.5 2.7E+02 0.0058 29.2 12.1 16 93-108 154-169 (455)
335 PF05715 zf-piccolo: Piccolo Z 50.4 9.3 0.0002 28.9 1.3 10 136-145 48-57 (61)
336 PRK10361 DNA recombination pro 50.3 3.4E+02 0.0075 28.9 14.5 19 331-349 140-158 (475)
337 PF07889 DUF1664: Protein of u 50.1 1.7E+02 0.0038 25.4 9.7 14 248-261 61-74 (126)
338 PRK10929 putative mechanosensi 50.1 3.5E+02 0.0075 32.0 14.4 20 244-263 204-223 (1109)
339 PF14446 Prok-RING_1: Prokaryo 49.8 13 0.00028 27.6 2.0 35 73-107 4-38 (54)
340 PF06156 DUF972: Protein of un 49.6 93 0.002 26.2 7.4 41 278-318 15-55 (107)
341 PF15233 SYCE1: Synaptonemal c 49.3 1.8E+02 0.004 25.5 10.3 21 279-299 35-55 (134)
342 COG5185 HEC1 Protein involved 49.2 2.6E+02 0.0056 29.9 11.8 15 331-345 407-421 (622)
343 KOG0018 Structural maintenance 49.2 3.2E+02 0.0069 32.0 13.4 21 243-263 776-796 (1141)
344 PF14193 DUF4315: Domain of un 49.2 1E+02 0.0022 24.9 7.2 71 286-374 2-73 (83)
345 KOG2034 Vacuolar sorting prote 49.1 6.2 0.00014 44.2 0.3 34 73-108 816-849 (911)
346 KOG2068 MOT2 transcription fac 48.8 13 0.00028 37.3 2.5 45 75-119 250-296 (327)
347 PLN03229 acetyl-coenzyme A car 48.6 1.9E+02 0.0041 32.5 11.4 19 225-243 458-476 (762)
348 COG4717 Uncharacterized conser 48.6 4.6E+02 0.01 30.1 14.3 20 244-263 567-586 (984)
349 PF05852 DUF848: Gammaherpesvi 48.5 2E+02 0.0044 25.7 10.1 19 330-348 95-113 (146)
350 TIGR03752 conj_TIGR03752 integ 48.5 1.6E+02 0.0036 31.2 10.5 42 299-344 102-143 (472)
351 PF02318 FYVE_2: FYVE-type zin 48.5 8.4 0.00018 32.8 1.0 13 73-85 53-65 (118)
352 PRK11281 hypothetical protein; 47.9 4.8E+02 0.01 30.9 15.1 13 332-344 354-366 (1113)
353 PF03961 DUF342: Protein of un 47.7 1.5E+02 0.0032 31.0 10.3 24 327-350 385-408 (451)
354 PF07889 DUF1664: Protein of u 47.2 1.9E+02 0.0042 25.1 11.8 35 284-318 67-101 (126)
355 PF08746 zf-RING-like: RING-li 46.9 14 0.00031 25.8 1.8 37 77-116 1-43 (43)
356 KOG2196 Nuclear porin [Nuclear 46.9 2.8E+02 0.0061 26.9 13.3 31 228-262 73-103 (254)
357 PRK04863 mukB cell division pr 46.7 6.4E+02 0.014 30.9 16.7 31 231-261 235-267 (1486)
358 COG4477 EzrA Negative regulato 46.6 3.4E+02 0.0074 29.4 12.4 24 330-353 453-476 (570)
359 PF14197 Cep57_CLD_2: Centroso 46.6 1.4E+02 0.003 23.2 10.1 38 278-315 5-42 (69)
360 PF13747 DUF4164: Domain of un 46.5 1.6E+02 0.0034 23.9 11.2 9 335-343 78-86 (89)
361 PF09755 DUF2046: Uncharacteri 46.2 3.2E+02 0.007 27.4 18.5 25 225-250 23-47 (310)
362 COG1382 GimC Prefoldin, chaper 46.0 2E+02 0.0043 24.9 10.5 13 331-343 98-110 (119)
363 PF09744 Jnk-SapK_ap_N: JNK_SA 45.9 2.3E+02 0.005 25.6 12.0 15 331-345 117-131 (158)
364 KOG4674 Uncharacterized conser 45.8 4E+02 0.0087 33.1 14.2 46 278-323 668-713 (1822)
365 PF04949 Transcrip_act: Transc 45.7 2.3E+02 0.0049 25.5 11.1 12 334-345 129-140 (159)
366 PLN02320 seryl-tRNA synthetase 45.0 1.1E+02 0.0024 32.7 8.8 22 326-347 146-167 (502)
367 PLN03188 kinesin-12 family pro 44.9 6.2E+02 0.014 30.4 15.1 16 292-307 1173-1188(1320)
368 KOG4275 Predicted E3 ubiquitin 44.8 8 0.00017 38.2 0.3 41 73-119 299-340 (350)
369 PRK00888 ftsB cell division pr 44.7 1.8E+02 0.004 24.2 8.5 7 362-368 78-84 (105)
370 PF04568 IATP: Mitochondrial A 44.6 59 0.0013 27.2 5.4 9 332-340 91-99 (100)
371 cd07594 BAR_Endophilin_B The B 44.5 2.9E+02 0.0063 26.4 12.7 19 337-355 198-216 (229)
372 KOG0994 Extracellular matrix g 44.4 3.6E+02 0.0078 32.1 12.8 8 142-149 1397-1404(1758)
373 TIGR02338 gimC_beta prefoldin, 44.3 1.9E+02 0.004 24.1 12.1 38 303-344 71-108 (110)
374 PRK02119 hypothetical protein; 44.3 1.5E+02 0.0033 23.1 8.0 13 331-343 37-49 (73)
375 KOG0243 Kinesin-like protein [ 44.1 3.6E+02 0.0078 31.5 13.0 85 270-354 440-527 (1041)
376 KOG1812 Predicted E3 ubiquitin 44.0 18 0.00039 37.2 2.7 82 75-166 239-355 (384)
377 PF15369 KIAA1328: Uncharacter 44.0 1.5E+02 0.0033 29.9 9.0 46 280-328 10-55 (328)
378 PF00261 Tropomyosin: Tropomyo 43.7 2.9E+02 0.0063 26.2 14.6 27 228-254 91-117 (237)
379 COG3813 Uncharacterized protei 43.3 19 0.00042 28.3 2.1 43 74-118 5-49 (84)
380 PF15450 DUF4631: Domain of un 43.1 4E+02 0.0086 28.7 12.3 97 242-341 370-472 (531)
381 PF08826 DMPK_coil: DMPK coile 42.8 1.5E+02 0.0032 22.5 9.6 9 332-340 47-55 (61)
382 COG3074 Uncharacterized protei 42.7 1.6E+02 0.0036 23.0 10.7 51 290-344 23-73 (79)
383 PF14073 Cep57_CLD: Centrosome 42.6 2.8E+02 0.006 25.6 12.3 19 304-322 132-150 (178)
384 KOG1100 Predicted E3 ubiquitin 42.6 15 0.00032 34.7 1.7 37 77-119 161-198 (207)
385 PF07352 Phage_Mu_Gam: Bacteri 42.6 1.6E+02 0.0035 25.9 8.3 29 313-341 28-56 (149)
386 KOG4005 Transcription factor X 42.4 2.4E+02 0.0052 27.3 9.7 39 275-313 87-125 (292)
387 KOG0288 WD40 repeat protein Ti 42.2 4.3E+02 0.0093 27.7 13.8 15 340-354 116-130 (459)
388 PF15619 Lebercilin: Ciliary p 42.1 2.9E+02 0.0063 25.7 13.8 18 228-245 25-42 (194)
389 PF13094 CENP-Q: CENP-Q, a CEN 42.1 2E+02 0.0044 25.4 8.9 12 280-291 43-54 (160)
390 cd07651 F-BAR_PombeCdc15_like 42.0 3E+02 0.0066 25.9 15.7 19 231-249 72-90 (236)
391 PF00769 ERM: Ezrin/radixin/mo 41.9 3.3E+02 0.007 26.2 13.1 36 308-343 77-115 (246)
392 TIGR01554 major_cap_HK97 phage 41.7 1.3E+02 0.0027 30.6 8.5 7 363-369 114-120 (378)
393 PF10458 Val_tRNA-synt_C: Valy 41.6 93 0.002 23.5 5.7 11 332-342 54-64 (66)
394 KOG4438 Centromere-associated 41.5 4.4E+02 0.0096 27.7 14.2 18 297-314 221-238 (446)
395 KOG3850 Predicted membrane pro 41.5 1.8E+02 0.0039 30.1 9.1 58 287-344 262-319 (455)
396 PF14644 DUF4456: Domain of un 41.4 3E+02 0.0065 25.7 16.1 35 229-263 25-59 (208)
397 PLN02939 transferase, transfer 41.4 6.4E+02 0.014 29.5 15.4 15 309-323 354-368 (977)
398 cd00729 rubredoxin_SM Rubredox 41.2 12 0.00026 24.9 0.7 13 137-149 2-14 (34)
399 PF03310 Cauli_DNA-bind: Cauli 41.1 1.8E+02 0.0038 25.3 7.8 32 340-373 50-81 (121)
400 KOG3915 Transcription regulato 41.0 4.4E+02 0.0096 28.1 12.0 10 298-307 541-550 (641)
401 smart00787 Spc7 Spc7 kinetocho 41.0 3.8E+02 0.0083 26.8 17.1 16 331-346 246-261 (312)
402 PRK13729 conjugal transfer pil 40.9 1.4E+02 0.003 31.8 8.6 15 279-293 77-91 (475)
403 PTZ00464 SNF-7-like protein; P 40.9 3.2E+02 0.0069 25.8 15.4 16 331-346 124-139 (211)
404 PF02841 GBP_C: Guanylate-bind 40.9 3.6E+02 0.0078 26.4 13.3 14 330-343 283-296 (297)
405 PRK06669 fliH flagellar assemb 40.9 3.5E+02 0.0075 26.3 15.3 7 337-343 165-171 (281)
406 PRK06231 F0F1 ATP synthase sub 40.9 3.1E+02 0.0066 25.6 15.0 20 328-347 156-175 (205)
407 PRK04325 hypothetical protein; 40.8 1.8E+02 0.0038 22.8 8.1 14 331-344 37-50 (74)
408 PF10079 DUF2317: Uncharacteri 40.7 3.2E+02 0.007 29.6 11.6 95 224-328 386-481 (542)
409 KOG1265 Phospholipase C [Lipid 40.7 6.4E+02 0.014 29.3 18.0 23 15-37 647-672 (1189)
410 PF12773 DZR: Double zinc ribb 40.7 29 0.00064 24.4 2.7 9 77-85 1-9 (50)
411 PF07111 HCR: Alpha helical co 40.5 5.7E+02 0.012 28.6 14.7 13 280-292 591-603 (739)
412 PRK02793 phi X174 lysis protei 40.0 1.8E+02 0.0039 22.7 8.1 14 331-344 36-49 (72)
413 PF06785 UPF0242: Uncharacteri 39.9 4.3E+02 0.0092 27.0 11.8 30 296-325 138-167 (401)
414 PF12329 TMF_DNA_bd: TATA elem 39.7 1.8E+02 0.0039 22.7 9.8 64 274-341 8-71 (74)
415 PF09986 DUF2225: Uncharacteri 39.7 20 0.00043 33.8 2.1 13 136-148 47-59 (214)
416 PF14643 DUF4455: Domain of un 39.5 4.8E+02 0.01 27.5 12.9 98 247-345 3-100 (473)
417 PF10498 IFT57: Intra-flagella 39.5 4.4E+02 0.0094 27.0 16.1 13 28-40 15-27 (359)
418 cd00350 rubredoxin_like Rubred 39.2 15 0.00032 24.2 0.8 10 136-145 16-25 (33)
419 PRK00295 hypothetical protein; 39.2 1.8E+02 0.0038 22.4 7.9 12 332-343 34-45 (68)
420 KOG1705 Uncharacterized conser 39.1 18 0.00039 29.7 1.5 39 110-148 27-66 (110)
421 KOG3579 Predicted E3 ubiquitin 39.1 16 0.00034 36.1 1.3 31 73-107 267-301 (352)
422 PLN03188 kinesin-12 family pro 39.1 7.6E+02 0.016 29.7 14.6 49 242-290 1070-1126(1320)
423 PF08614 ATG16: Autophagy prot 38.9 3.1E+02 0.0067 25.1 10.8 16 329-344 163-178 (194)
424 KOG1512 PHD Zn-finger protein 38.7 14 0.00031 36.4 0.9 33 75-107 259-296 (381)
425 cd00890 Prefoldin Prefoldin is 38.6 2.3E+02 0.005 23.6 13.1 16 246-261 4-19 (129)
426 smart00502 BBC B-Box C-termina 38.5 2.1E+02 0.0047 23.2 12.2 19 329-347 77-95 (127)
427 PF05529 Bap31: B-cell recepto 38.3 2.5E+02 0.0054 25.6 9.2 14 241-254 93-106 (192)
428 COG5082 AIR1 Arginine methyltr 38.3 93 0.002 29.0 6.1 93 71-187 57-166 (190)
429 PF12761 End3: Actin cytoskele 38.2 2.6E+02 0.0057 26.2 9.1 21 331-351 167-187 (195)
430 PF14073 Cep57_CLD: Centrosome 38.1 1.6E+02 0.0034 27.2 7.6 30 277-306 3-32 (178)
431 COG0466 Lon ATP-dependent Lon 38.1 1.5E+02 0.0032 33.3 8.6 57 298-355 216-274 (782)
432 TIGR02449 conserved hypothetic 37.7 1.9E+02 0.0041 22.3 8.1 40 279-318 22-61 (65)
433 COG1592 Rubrerythrin [Energy p 37.7 14 0.0003 33.7 0.7 21 126-146 135-158 (166)
434 PF06906 DUF1272: Protein of u 37.6 33 0.00072 25.7 2.5 43 74-118 5-49 (57)
435 PF07464 ApoLp-III: Apolipopho 37.6 88 0.0019 28.2 5.8 17 299-315 92-108 (155)
436 KOG0982 Centrosomal protein Nu 37.5 5.2E+02 0.011 27.3 14.7 31 153-185 139-169 (502)
437 PF14369 zf-RING_3: zinc-finge 37.3 13 0.00027 25.0 0.2 14 174-187 1-14 (35)
438 KOG4360 Uncharacterized coiled 37.1 5.7E+02 0.012 27.6 15.1 125 224-356 166-301 (596)
439 smart00502 BBC B-Box C-termina 37.0 2.3E+02 0.0049 23.0 13.9 16 246-261 12-27 (127)
440 KOG0972 Huntingtin interacting 37.0 4.5E+02 0.0097 26.4 12.4 17 24-40 28-44 (384)
441 KOG2129 Uncharacterized conser 36.8 5.3E+02 0.011 27.2 14.5 31 228-259 135-165 (552)
442 PRK11546 zraP zinc resistance 36.7 3.1E+02 0.0067 24.4 9.1 21 328-348 93-113 (143)
443 PF05377 FlaC_arch: Flagella a 36.7 1.8E+02 0.0039 21.7 6.7 9 283-291 5-13 (55)
444 PF05130 FlgN: FlgN protein; 36.6 2.5E+02 0.0053 23.3 10.9 25 242-266 6-30 (143)
445 TIGR02231 conserved hypothetic 36.5 3.3E+02 0.0071 29.0 11.0 13 331-343 159-171 (525)
446 PF04136 Sec34: Sec34-like fam 36.5 3.1E+02 0.0068 24.5 10.4 24 332-355 96-119 (157)
447 PRK11020 hypothetical protein; 36.5 2.8E+02 0.006 23.8 8.6 20 278-297 5-24 (118)
448 PF04012 PspA_IM30: PspA/IM30 36.3 3.5E+02 0.0077 25.0 17.3 42 279-320 92-133 (221)
449 PRK14474 F0F1 ATP synthase sub 36.0 4E+02 0.0088 25.6 15.9 17 331-347 116-132 (250)
450 COG0419 SbcC ATPase involved i 36.0 7.2E+02 0.016 28.5 18.0 10 337-346 430-439 (908)
451 PF08581 Tup_N: Tup N-terminal 35.8 2.3E+02 0.0049 22.6 9.8 35 228-262 3-39 (79)
452 PF15294 Leu_zip: Leucine zipp 35.8 2.5E+02 0.0054 27.8 9.0 69 275-343 129-202 (278)
453 PF02388 FemAB: FemAB family; 35.8 1.9E+02 0.004 29.9 8.7 14 250-263 217-230 (406)
454 PF02388 FemAB: FemAB family; 35.7 1.9E+02 0.0042 29.7 8.8 38 279-320 243-280 (406)
455 PF05266 DUF724: Protein of un 35.5 3.7E+02 0.0079 25.0 10.4 69 275-343 100-171 (190)
456 cd07600 BAR_Gvp36 The Bin/Amph 35.4 4.2E+02 0.009 25.6 12.6 23 333-355 207-229 (242)
457 PRK00888 ftsB cell division pr 35.4 1.6E+02 0.0035 24.6 6.7 25 282-306 31-55 (105)
458 PF02185 HR1: Hr1 repeat; Int 35.4 2E+02 0.0043 21.8 7.2 18 330-347 46-63 (70)
459 KOG2150 CCR4-NOT transcription 35.3 4.1E+02 0.009 28.9 11.1 32 228-259 18-49 (575)
460 PF10481 CENP-F_N: Cenp-F N-te 35.0 2.3E+02 0.0051 28.0 8.5 19 328-346 92-110 (307)
461 PRK04863 mukB cell division pr 34.8 9.4E+02 0.02 29.5 18.2 9 174-182 215-223 (1486)
462 KOG0241 Kinesin-like protein [ 34.8 2.8E+02 0.006 32.4 10.0 19 164-182 220-238 (1714)
463 PF12711 Kinesin-relat_1: Kine 34.7 2.5E+02 0.0055 22.8 9.9 11 330-340 76-86 (86)
464 KOG1937 Uncharacterized conser 34.7 5.9E+02 0.013 27.1 14.8 30 232-261 244-275 (521)
465 PF12999 PRKCSH-like: Glucosid 34.7 3.7E+02 0.008 24.8 9.4 23 228-250 116-138 (176)
466 PF11544 Spc42p: Spindle pole 34.6 2.4E+02 0.0051 22.5 8.0 35 278-312 5-39 (76)
467 PF12252 SidE: Dot/Icm substra 34.6 5.5E+02 0.012 30.3 12.3 27 331-359 1204-1230(1439)
468 PF03978 Borrelia_REV: Borreli 34.5 3.5E+02 0.0076 24.5 9.4 62 279-344 48-111 (160)
469 COG1256 FlgK Flagellar hook-as 34.5 3.5E+02 0.0076 29.4 10.7 26 232-257 63-91 (552)
470 PF07139 DUF1387: Protein of u 34.3 4.9E+02 0.011 26.1 11.2 81 250-341 173-253 (302)
471 PRK13169 DNA replication intia 34.0 2.2E+02 0.0048 24.2 7.3 37 280-316 17-53 (110)
472 PF07083 DUF1351: Protein of u 33.9 4.1E+02 0.0088 25.0 11.3 32 308-339 73-104 (215)
473 PF12777 MT: Microtubule-bindi 33.8 4.6E+02 0.0099 26.4 11.0 8 182-189 153-160 (344)
474 KOG1003 Actin filament-coating 33.7 4.1E+02 0.0089 25.0 11.6 92 250-343 81-177 (205)
475 KOG0980 Actin-binding protein 33.7 8E+02 0.017 28.3 17.3 16 234-249 391-406 (980)
476 PF04568 IATP: Mitochondrial A 33.7 2.8E+02 0.0061 23.1 7.9 23 298-320 75-97 (100)
477 PF10211 Ax_dynein_light: Axon 33.7 3.8E+02 0.0083 24.7 15.4 10 332-341 178-187 (189)
478 KOG4466 Component of histone d 33.4 4.9E+02 0.011 25.8 13.0 14 253-266 40-53 (291)
479 KOG4403 Cell surface glycoprot 33.2 3.5E+02 0.0076 28.6 9.8 70 249-324 236-327 (575)
480 PF15233 SYCE1: Synaptonemal c 33.2 3.4E+02 0.0073 23.9 12.5 19 330-348 95-113 (134)
481 PRK00736 hypothetical protein; 33.0 2.3E+02 0.0049 21.8 7.6 51 282-343 2-52 (68)
482 PF10267 Tmemb_cc2: Predicted 32.9 5.8E+02 0.013 26.5 17.9 151 202-366 178-335 (395)
483 PF02183 HALZ: Homeobox associ 32.7 1.8E+02 0.0039 20.6 5.7 42 274-315 1-42 (45)
484 PHA03332 membrane glycoprotein 32.6 4.7E+02 0.01 30.8 11.4 84 269-352 889-980 (1328)
485 cd07617 BAR_Endophilin_B2 The 32.6 4.5E+02 0.0097 25.1 12.4 97 254-350 102-202 (220)
486 PF05266 DUF724: Protein of un 32.4 4.1E+02 0.0089 24.6 14.0 93 229-335 96-188 (190)
487 PF05766 NinG: Bacteriophage L 32.3 1.5E+02 0.0033 27.6 6.6 88 140-265 90-189 (189)
488 PF05278 PEARLI-4: Arabidopsis 32.3 5E+02 0.011 25.6 15.0 114 226-343 146-261 (269)
489 PRK10220 hypothetical protein; 32.2 30 0.00065 29.4 1.8 22 124-145 2-28 (111)
490 PF13094 CENP-Q: CENP-Q, a CEN 32.2 3.1E+02 0.0068 24.2 8.6 68 255-327 23-90 (160)
491 smart00361 RRM_1 RNA recogniti 32.0 84 0.0018 23.6 4.2 36 4-40 24-63 (70)
492 TIGR00634 recN DNA repair prot 32.0 5.2E+02 0.011 27.8 11.7 110 231-347 282-391 (563)
493 COG4985 ABC-type phosphate tra 31.8 3.7E+02 0.0081 26.0 9.1 67 227-299 176-242 (289)
494 PF07800 DUF1644: Protein of u 31.5 27 0.00059 31.6 1.5 20 73-96 1-20 (162)
495 TIGR00686 phnA alkylphosphonat 31.5 30 0.00066 29.3 1.7 22 124-145 1-27 (109)
496 COG1198 PriA Primosomal protei 31.4 30 0.00064 38.7 2.1 38 96-144 441-482 (730)
497 PHA02148 hypothetical protein 31.4 81 0.0018 26.0 4.0 66 299-368 37-102 (110)
498 KOG3809 Microtubule-binding pr 31.2 3.8E+02 0.0083 28.3 9.7 99 241-342 445-557 (583)
499 PF04012 PspA_IM30: PspA/IM30 31.2 4.3E+02 0.0093 24.4 12.4 98 255-352 1-112 (221)
500 KOG0018 Structural maintenance 31.2 7E+02 0.015 29.4 12.5 93 245-343 656-751 (1141)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=100.00 E-value=2.7e-106 Score=796.55 Aligned_cols=367 Identities=51% Similarity=0.903 Sum_probs=326.3
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCCCCcccceEEEEeEEEEeecccccCCCCCCCCCCCcccccc
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICL 81 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s~e~e~C~v~~v~~v~~~~~~~~~~~~~~~~~E~~tCpiCl 81 (391)
.+|||| |++||||||||||+++.+|+.||.+|||++||++||++|||+||.+|+|+.+.+.+++++++++|+|||||||
T Consensus 104 ~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s~d~as~~~~~~tELPTCpVCL 182 (493)
T KOG0804|consen 104 DIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTESEDGASEPPTGLTELPTCPVCL 182 (493)
T ss_pred eeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEecccCCCCCCCCcccCCCcchhH
Confidence 489999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCceeecCCCcccchhhhccccccCCCccccccC--CCCCcccccCcccceeeecccccccccCCCCcccccc
Q 016340 82 ERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQ--DERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRH 159 (391)
Q Consensus 82 e~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~--~~~~~C~~C~~~~~lwiCL~CG~vgCgr~~~~HA~~H 159 (391)
||||++++||+++.|+|+||+.|+.+|.+++||+||+++.| .+...|.+|+..++||+||+||++|||||..+||.+|
T Consensus 183 ERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rH 262 (493)
T KOG0804|consen 183 ERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLWICLICGNVGCGRYKEGHARRH 262 (493)
T ss_pred hhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEEEEEEccceecccccchhHHHH
Confidence 99999999999999999999999999999999999998863 1467999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCceeEecCCchhhhhhhcccccCCeecccCCCCCcCCCCCCCcCCCCCCccchhhhhhHHHHHHHHH
Q 016340 160 WKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYN 239 (391)
Q Consensus 160 ~~~t~H~~~~~l~t~~vwcy~cd~~Vhrl~~~k~dgklve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~e~~~~Ey~ 239 (391)
|++|+|+|+|+|+|++||||+||+|||||+++++|||+|++...+.+. ...+.+.+.+||+
T Consensus 263 weet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~-------------------~~~~~~~~~~~~s 323 (493)
T KOG0804|consen 263 WEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDS-------------------RKDDCDSLELEYS 323 (493)
T ss_pred HHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEeccccccc-------------------cccCcceEEeecc
Confidence 999999999999999999999999999999999999999987765321 1234455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-h-------------------hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 240 RLLATQLETQRQYYESLLAEAKS-K-------------------RESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 299 (391)
Q Consensus 240 ~ll~sqLesQR~yyE~~l~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ 299 (391)
.||+|||||||.|||..+.++.+ + .+....++.++.++.++++++.+++++.+|++++++
T Consensus 324 ~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 324 PLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766666554 2 222233445566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhhccCCCCCcCCcEEeecCCCCCCCCC
Q 016340 300 VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQSSPTN 379 (391)
Q Consensus 300 ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~~~~~~ei~~g~i~~~~~~~~~~~~ 379 (391)
+|+.|.+||..|+.+++++++++++++..++++|+||+||||||||||++|+||+ ++.+||++|||++++..++++++
T Consensus 404 ~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk--~dt~eIqegtI~~~~~s~~~~~~ 481 (493)
T KOG0804|consen 404 ENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK--SDTDEIQEGTILITQISPSSSSS 481 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh--cchhhhcCceeeccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999998 34569999999987766666665
Q ss_pred ccCCCCcCCCC
Q 016340 380 TRRHKKSSRRK 390 (391)
Q Consensus 380 ~~~~~k~~~~~ 390 (391)
-+++||+|||+
T Consensus 482 ~~~kkk~nrrk 492 (493)
T KOG0804|consen 482 VKSKKKSNRRK 492 (493)
T ss_pred ccchhhhcccC
Confidence 56666667665
No 2
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=99.89 E-value=1.2e-23 Score=177.45 Aligned_cols=67 Identities=51% Similarity=0.822 Sum_probs=62.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCCCCcccceEEEEeEEEEeecccccCCCCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPA 69 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s~e~e~C~v~~v~~v~~~~~~~~~~~~~~ 69 (391)
.+|||| |++||||||||||+++.+|++||..|||++|||||||+||||||.+|+|+.+.+.+..+|.
T Consensus 43 ~~riir-d~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~Ve~~~~~~~~~~~~~ 109 (110)
T PF07576_consen 43 HIRIIR-DGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKSVEFTSSAEGASSPPT 109 (110)
T ss_pred EEEEee-CCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEEEEEEcccccccCCCC
Confidence 378999 8999999999999999999999999999999999999999999999999999888776654
No 3
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.63 E-value=2.7e-17 Score=125.60 Aligned_cols=60 Identities=55% Similarity=1.242 Sum_probs=52.9
Q ss_pred ccccCcc-cceeeecccccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhhhh
Q 016340 128 CSVCGTV-ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187 (391)
Q Consensus 128 C~~C~~~-~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~Vhr 187 (391)
|.+|+.. .++|+||+||++|||++..+||..|+++++|++++++.+..||||.|++||..
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~ 61 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD 61 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence 6678777 78999999999999999999999999999999999999999999999999974
No 4
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.3e-13 Score=139.95 Aligned_cols=64 Identities=41% Similarity=0.854 Sum_probs=59.2
Q ss_pred CCCCCcccccCcccceeeecccccccccCCC------CcccccccCCCCCcccccCCC-----ceeEecCCchhh
Q 016340 122 QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 185 (391)
Q Consensus 122 ~~~~~~C~~C~~~~~lwiCL~CG~vgCgr~~------~~HA~~H~~~t~H~~~~~l~t-----~~vwcy~cd~~V 185 (391)
++..++|..|+..+|||+||+||.|||||.. ++||..||.+|+||+++.|+| ..||||.||..|
T Consensus 176 ~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v 250 (763)
T KOG0944|consen 176 PPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEV 250 (763)
T ss_pred CCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccc
Confidence 3567999999999999999999999999964 889999999999999998864 899999999988
No 5
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.5e-12 Score=129.71 Aligned_cols=62 Identities=44% Similarity=0.954 Sum_probs=56.5
Q ss_pred CCCcccccCcccceeeecccccccccCCC-----CcccccccCCCCCcccccCC-----CceeEecCCchhh
Q 016340 124 ERPTCSVCGTVENLWVCLICGFVGCGRYK-----EGHAVRHWKDTQHWYSLDLR-----TQQIWDYVGDNYV 185 (391)
Q Consensus 124 ~~~~C~~C~~~~~lwiCL~CG~vgCgr~~-----~~HA~~H~~~t~H~~~~~l~-----t~~vwcy~cd~~V 185 (391)
...+|+.|+...|||+||.||++||||-+ ++||+.||.+|+||+++.+. +..+|||.||..+
T Consensus 172 ~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~ 243 (749)
T COG5207 172 GGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEI 243 (749)
T ss_pred CCceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCccc
Confidence 35799999999999999999999999964 89999999999999988774 6999999999874
No 6
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=109.60 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=8.8
Q ss_pred CceEEEEecCChhhHHHH
Q 016340 13 DRYSVLIKLVDQLTADEF 30 (391)
Q Consensus 13 ~~y~vLlkF~~~~~A~~f 30 (391)
+.-..+|--......-+|
T Consensus 74 ~~mLcilaVP~~mt~~Dl 91 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDL 91 (493)
T ss_pred CcEEEEEeccccccHHHH
Confidence 445555555554444443
No 7
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.07 E-value=4.5e-11 Score=86.72 Aligned_cols=49 Identities=59% Similarity=1.236 Sum_probs=45.6
Q ss_pred cccccCcccceeeecccccccccCCCCcccccccCCCCCcccccCCCce
Q 016340 127 TCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQ 175 (391)
Q Consensus 127 ~C~~C~~~~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~ 175 (391)
+|..|+...++|+||.|+++||+++..+|+..|+..++|++++++.+..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 4889998889999999999999999999999999999999999988764
No 8
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.88 E-value=7.4e-10 Score=114.61 Aligned_cols=61 Identities=30% Similarity=0.441 Sum_probs=57.7
Q ss_pred CCcccccCcccceeeecccccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhh
Q 016340 125 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185 (391)
Q Consensus 125 ~~~C~~C~~~~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~V 185 (391)
+-.|.+|....|+|+||+||.+.||+..++||..|+.+++|.+++++.|..||||.|+.||
T Consensus 16 e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v 76 (440)
T cd02669 16 EKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEI 76 (440)
T ss_pred cccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEE
Confidence 3469999999999999999988888888999999999999999999999999999999999
No 9
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-09 Score=112.92 Aligned_cols=90 Identities=24% Similarity=0.562 Sum_probs=62.3
Q ss_pred CCCcccchhhhccc-------cccCCCccccccCCCCCcccccCcccceeeecccccccccC-CCCcccccccCC---CC
Q 016340 96 CDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGR-YKEGHAVRHWKD---TQ 164 (391)
Q Consensus 96 C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vgCgr-~~~~HA~~H~~~---t~ 164 (391)
|.|--+..=+.+.. +..|..|.........-.-..-.....+|+||.||+.|||| ....||+.||.. +.
T Consensus 45 C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~ 124 (877)
T KOG1873|consen 45 CQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEP 124 (877)
T ss_pred cchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhhhhcccCCCC
Confidence 87766554444321 45677776533211110000011124699999999999999 678999999987 47
Q ss_pred CcccccCCCceeEecCCchhh
Q 016340 165 HWYSLDLRTQQIWDYVGDNYV 185 (391)
Q Consensus 165 H~~~~~l~t~~vwcy~cd~~V 185 (391)
||+++.+.++.+|||.||.-+
T Consensus 125 Hclvin~~n~~~WCy~Cd~kl 145 (877)
T KOG1873|consen 125 HCLVINLINWLIWCYSCDAKL 145 (877)
T ss_pred eeEEEEeeeeeeEEEeccchh
Confidence 999999999999999999944
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.66 E-value=4.6e-09 Score=74.16 Aligned_cols=41 Identities=41% Similarity=0.998 Sum_probs=34.3
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcc
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCR 117 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr 117 (391)
+||||++.|.+ ...++.++|+|.||..|+..|. ...||+||
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999965 3456788899999999999996 67999997
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.61 E-value=1.3e-08 Score=71.61 Aligned_cols=36 Identities=42% Similarity=0.914 Sum_probs=27.2
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhcc-c-----cccCCCc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKW-T-----VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w-~-----~~~CP~C 116 (391)
||||++.|.+| ++++|||+||..||..| . ...||.|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 89999999999999994 3 2468877
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.26 E-value=4.7e-07 Score=86.37 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=36.9
Q ss_pred CCCccccccCCcCC-CCCC---ceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDP-DTSG---ILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~-~~~g---~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
....||||++.+.+ ++.. .+.++|+|.||..|+..|. ...||+||..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 46799999998643 2111 2456799999999999996 67899999864
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.25 E-value=4.8e-07 Score=83.28 Aligned_cols=45 Identities=33% Similarity=0.720 Sum_probs=37.2
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc------------------cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------------------VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~------------------~~~CP~Cr~~~ 120 (391)
.+...||||++.+.++ +.++|||.||..||..|. ...||+||...
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 3568999999998766 667899999999999984 14799999754
No 14
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.9e-07 Score=88.29 Aligned_cols=56 Identities=27% Similarity=0.565 Sum_probs=43.1
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccccCCCCCccccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVC 131 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~~~~~~~C~~C 131 (391)
.+|.||||.|.+. ..+..+||.|.||..|+..|. -..||+|+.-...+....+..+
T Consensus 230 ~~CaIClEdY~~G-dklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred ceEEEeecccccC-CeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence 3999999999764 456779999999999999996 3569999875544444444444
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.18 E-value=7.6e-07 Score=69.93 Aligned_cols=44 Identities=32% Similarity=0.763 Sum_probs=32.9
Q ss_pred CCccccccCCcCCCC---------CCceeecCCCcccchhhhccc--cccCCCcc
Q 016340 74 LPTCPICLERLDPDT---------SGILSTICDHSFQCSCTAKWT--VLSCQVCR 117 (391)
Q Consensus 74 ~~tCpiCle~ld~~~---------~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr 117 (391)
...|+||++.|.++. -.+...+|||.||..||.+|. ...||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345999999994331 223456799999999999996 57999997
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.11 E-value=7.3e-07 Score=61.34 Aligned_cols=37 Identities=43% Similarity=0.975 Sum_probs=29.6
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~C 116 (391)
||||++.+.++ ++.++|||+||..|+.+|. ...||+|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998764 3578899999999999984 6788887
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.06 E-value=1.5e-06 Score=81.27 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=36.4
Q ss_pred CCCCccccccCCcCCC------CCCceeecCCCcccchhhhccccc--------cCCCccccc
Q 016340 72 TELPTCPICLERLDPD------TSGILSTICDHSFQCSCTAKWTVL--------SCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~------~~g~it~~C~H~F~~~Cl~~w~~~--------~CP~Cr~~~ 120 (391)
.+..+|+||+|..... .-| +..+|+|+||..|+..|... .||+||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFG-IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFG-LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCcccccccccccccccc-ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3568999999986321 124 45679999999999999632 499999865
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.03 E-value=2.7e-06 Score=60.16 Aligned_cols=42 Identities=31% Similarity=0.672 Sum_probs=34.7
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccc
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 118 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~ 118 (391)
.|++|++.+.+ ......++|||+||..|+..+. ...||+|+.
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999943 2345778899999999999987 789999974
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=2.1e-06 Score=87.43 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=39.5
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+.....|+||++.|..+ ++++|+|.||..|+..|. ...||+|+...
T Consensus 22 ~Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred ccccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 455678999999999776 567999999999999874 45799999865
No 20
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.99 E-value=2.4e-06 Score=61.95 Aligned_cols=43 Identities=30% Similarity=0.632 Sum_probs=35.5
Q ss_pred CCCccccccCCcCCCCCCceeecCCCc-ccchhhhcc--ccccCCCcccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKW--TVLSCQVCRFC 119 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w--~~~~CP~Cr~~ 119 (391)
|...|+||++..... +.++|||. ||..|...| ....||+||..
T Consensus 1 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 46 (50)
T PF13920_consen 1 EDEECPICFENPRDV----VLLPCGHLCFCEECAERLLKRKKKCPICRQP 46 (50)
T ss_dssp -HSB-TTTSSSBSSE----EEETTCEEEEEHHHHHHHHHTTSBBTTTTBB
T ss_pred CcCCCccCCccCCce----EEeCCCChHHHHHHhHHhcccCCCCCcCChh
Confidence 456899999997653 78899999 999999998 47899999974
No 21
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.7e-06 Score=78.74 Aligned_cols=44 Identities=41% Similarity=0.760 Sum_probs=38.4
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCR 117 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr 117 (391)
.+.+..+||||++.|..+ .+++|+|+||..|+..+. ...||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 456789999999999887 678899999999999854 37899999
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.93 E-value=2.6e-06 Score=58.89 Aligned_cols=37 Identities=41% Similarity=1.038 Sum_probs=30.8
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhccc----cccCCCc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~----~~~CP~C 116 (391)
||||++.+..++ ..++|+|.||..|+.+|. ...||.|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998762 478999999999999964 4578876
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.89 E-value=5.7e-06 Score=56.88 Aligned_cols=40 Identities=40% Similarity=0.947 Sum_probs=31.8
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccc
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 118 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~ 118 (391)
+|+||++.+..+ +...+|+|.||..|+..|. ...||.|+.
T Consensus 1 ~C~iC~~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhCc---eEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 599999998433 2445599999999999985 457999975
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.9e-06 Score=80.74 Aligned_cols=47 Identities=30% Similarity=0.698 Sum_probs=39.2
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 121 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 121 (391)
-..|.||++-|.. +..++.+||+|.||..|+.+|. ...||+||...+
T Consensus 323 GveCaICms~fiK-~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIK-NDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcc-cceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3689999998854 3347899999999999999996 468999998663
No 25
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=0.00026 Score=69.81 Aligned_cols=46 Identities=24% Similarity=0.523 Sum_probs=33.0
Q ss_pred CCccccccCC--cCCCCCCceeecCCCcccchhhhc-cc--cccCCCccccc
Q 016340 74 LPTCPICLER--LDPDTSGILSTICDHSFQCSCTAK-WT--VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~--ld~~~~g~it~~C~H~F~~~Cl~~-w~--~~~CP~Cr~~~ 120 (391)
...||+|..- +.+...-.+. +|||.||..|+.. |. ...||.|+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~l 53 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPL 53 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCcc
Confidence 4689999983 3443222233 7999999999999 64 45799997644
No 26
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.8e-06 Score=79.01 Aligned_cols=52 Identities=31% Similarity=0.644 Sum_probs=41.1
Q ss_pred CCCCCCC-CCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccccC
Q 016340 67 PPAGFTE-LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQQ 122 (391)
Q Consensus 67 ~~~~~~E-~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~~ 122 (391)
.++.+.+ .+.|.+|||-...| .-+||||-||-.||..|. ...||.||..++|
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCccCCCCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 3444455 48999999998544 467899999999999996 5679999987744
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=9.1e-06 Score=76.39 Aligned_cols=43 Identities=30% Similarity=0.724 Sum_probs=37.0
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhccc-----cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 120 (391)
...|.||||.-.++ +.+.|||-||-.||.+|. ...||||+...
T Consensus 47 ~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 47 FFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred ceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 56899999999776 677799999999999996 35789999765
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.75 E-value=1.6e-05 Score=59.73 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=36.0
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..||||.+.|.+| +.++|||+|+..|+..|. ...||+|+...
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 5799999999877 778999999999999974 56899998643
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.73 E-value=1.7e-05 Score=52.49 Aligned_cols=36 Identities=44% Similarity=1.063 Sum_probs=29.6
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~C 116 (391)
|+||++....+ +.++|+|.||..|+..|. ...||+|
T Consensus 1 C~iC~~~~~~~----~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP----VVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc----EEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999986543 678899999999999984 4568876
No 30
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.5e-05 Score=72.18 Aligned_cols=44 Identities=32% Similarity=0.674 Sum_probs=35.5
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 118 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~ 118 (391)
....|||||+.+..-+ ++.+.|||.||..|+.... ...||+|+.
T Consensus 130 ~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCccc
Confidence 3578999999996532 2668899999999998853 678999985
No 31
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.69 E-value=2.2e-05 Score=59.77 Aligned_cols=44 Identities=32% Similarity=0.627 Sum_probs=25.6
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
.++..|++|.+.|..|+ .+..|.|.||..|+..-..+.||+|..
T Consensus 5 e~lLrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~~~CPvC~~ 48 (65)
T PF14835_consen 5 EELLRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIGSECPVCHT 48 (65)
T ss_dssp HHTTS-SSS-S--SS-B------SSS--B-TTTGGGGTTTB-SSS--
T ss_pred HHhcCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcCCCCCCcCC
Confidence 45789999999998873 356799999999998876678999975
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.67 E-value=1.1e-05 Score=56.96 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=19.2
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhccc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT 109 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~ 109 (391)
||||.| |..+....+.++|||+||..|+.++.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLS 32 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHH
Confidence 999999 75433334778899999999999864
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.49 E-value=3e-05 Score=74.96 Aligned_cols=47 Identities=30% Similarity=0.583 Sum_probs=39.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
++--...|-||-++|..+ +.++|||+||.-||.... ...||+||.-.
T Consensus 21 ~LDs~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 21 GLDSMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred cchhHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 444567899999999876 677899999999998853 78999999854
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=5.5e-05 Score=78.21 Aligned_cols=45 Identities=36% Similarity=0.733 Sum_probs=35.3
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhc-cc------cccCCCccccccC
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT------VLSCQVCRFCHQQ 122 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~-w~------~~~CP~Cr~~~~~ 122 (391)
...|||||+--..+ ..+.|||.||..||-+ |. ...||+|+....+
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999976544 3445999999999977 64 4589999976543
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.43 E-value=7.1e-05 Score=60.30 Aligned_cols=47 Identities=28% Similarity=0.586 Sum_probs=33.3
Q ss_pred CCccccccCCcCCC---------CCCceeecCCCcccchhhhccc-----cccCCCccccc
Q 016340 74 LPTCPICLERLDPD---------TSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~---------~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 120 (391)
+..|+||...|+.. .-.++.-.|+|.||..||.+|. ...||+||...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 55677777666521 1123455699999999999995 35799999754
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.38 E-value=2.6e-05 Score=76.82 Aligned_cols=48 Identities=27% Similarity=0.614 Sum_probs=40.7
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 121 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~ 121 (391)
.+-.+..|.||.|.|..| +.+||+|+||.-||.... ...||.|+..++
T Consensus 19 ~lD~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred hhHHHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 444688999999999877 777899999999999964 789999998663
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.13 E-value=0.00011 Score=78.89 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=33.7
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+-.||+|+-.+.+..- +...+|+|-||..|+..|. .-.||+||..|
T Consensus 123 ~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 4478888876533211 1245799999999999996 56899999876
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00023 Score=75.97 Aligned_cols=46 Identities=33% Similarity=0.643 Sum_probs=37.1
Q ss_pred CCccccccCCcCCC-CCCceeecCCCcccchhhhccc--cccCCCcccc
Q 016340 74 LPTCPICLERLDPD-TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle~ld~~-~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
...|+||+|.|... ......++|+|.||..|+..|. ...||.||..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 67999999998541 1112567899999999999996 7899999983
No 39
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0004 Score=66.59 Aligned_cols=43 Identities=35% Similarity=0.610 Sum_probs=36.0
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhc-cc---cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~-w~---~~~CP~Cr~~~ 120 (391)
...|++|++....+ .-++|||-||..||-. |. ..-||+||...
T Consensus 215 d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 55799999998765 6778999999999988 96 34599999755
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00021 Score=77.10 Aligned_cols=49 Identities=24% Similarity=0.544 Sum_probs=40.5
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhcc---ccccCCCccccccC
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFCHQQ 122 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w---~~~~CP~Cr~~~~~ 122 (391)
.+.+..+||+|-++..+. +.+.|+|.||..|+... ....||.|...|++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHhceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345789999999998764 56679999999999884 37899999988854
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.79 E-value=0.00042 Score=54.28 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 118 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~ 118 (391)
+...|||+.+.|.+| +.+++||+|...|+..|. ...||.|+.
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~ 47 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQ 47 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-S
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCC
Confidence 457899999999887 788999999999999994 578999865
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00063 Score=68.00 Aligned_cols=47 Identities=28% Similarity=0.705 Sum_probs=36.2
Q ss_pred CCCccccccCCc-CCCC----C----CceeecCCCcccchhhhccc--cccCCCcccc
Q 016340 73 ELPTCPICLERL-DPDT----S----GILSTICDHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 73 E~~tCpiCle~l-d~~~----~----g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
.+-+|.||.|.| .++. . ..--+||||-||..|+..|. .-.||.||..
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 367899999985 3321 1 12357999999999999995 7799999975
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.59 E-value=0.19 Score=49.48 Aligned_cols=110 Identities=14% Similarity=0.302 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
+...+..|..+|...+..-.+.=-.+|..++.++.......- .++ ..+...+..++..+..+..++..++..|..|..
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~-~~~-~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS-EEL-ESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc-ccc-chhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 456677888999999888888888999999988876543311 111 123345556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 016340 307 NQEIMRKKFKEIEEREITSLRLRDATILDLEE 338 (391)
Q Consensus 307 nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~E 338 (391)
....+...+..-.......+..++.++.+|+.
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 55555544443333333333333444444433
No 44
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.13 E-value=0.003 Score=50.09 Aligned_cols=47 Identities=26% Similarity=0.621 Sum_probs=34.2
Q ss_pred CCccccccCCcCCCCCCcee-ecCCCcccchhhhccc--cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it-~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+||-|..-+++...-.+. -.|+|.||..|+.+|. ...||+++..+
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 34777787777554333333 3599999999999996 46899998754
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0031 Score=63.39 Aligned_cols=47 Identities=34% Similarity=0.810 Sum_probs=37.3
Q ss_pred CCCCccccccCCcCCCC-----CCceeecCCCcccchhhhccc---------cccCCCcccc
Q 016340 72 TELPTCPICLERLDPDT-----SGILSTICDHSFQCSCTAKWT---------VLSCQVCRFC 119 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~-----~g~it~~C~H~F~~~Cl~~w~---------~~~CP~Cr~~ 119 (391)
...-+|.||+|...... -| +.++|.|+||..|+..|. ...||.||..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfg-ilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFG-ILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcc-cCCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 45789999999875544 34 235699999999999996 4789999974
No 46
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0031 Score=60.73 Aligned_cols=49 Identities=22% Similarity=0.611 Sum_probs=38.6
Q ss_pred CCCCCccccccCCcCCCC--CC----ceeecCCCcccchhhhccc----cccCCCcccc
Q 016340 71 FTELPTCPICLERLDPDT--SG----ILSTICDHSFQCSCTAKWT----VLSCQVCRFC 119 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~--~g----~it~~C~H~F~~~Cl~~w~----~~~CP~Cr~~ 119 (391)
--++.-|.||-..++.++ .| +-+++|+|+||-.|+..|- ...||.|+.-
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 346778999999987653 23 3478999999999999994 5689999764
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0004 Score=68.99 Aligned_cols=48 Identities=33% Similarity=0.532 Sum_probs=37.5
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhcc---ccccCCCcccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFC 119 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w---~~~~CP~Cr~~ 119 (391)
..+.-...|||||+.+...+ .+.-|.|-||..|+-.. ....||.||..
T Consensus 38 ~~~~~~v~c~icl~llk~tm---ttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTM---TTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred HHhhhhhccHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 34556789999999997652 34569999999999552 26799999975
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0038 Score=61.06 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=36.8
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhc--cccc-cCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK--WTVL-SCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~--w~~~-~CP~Cr~~~ 120 (391)
-.+.|+||+....-| +.+.|+|.||..||.. |.+. .|++||.-.
T Consensus 6 ~~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pi 52 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPI 52 (324)
T ss_pred cCCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCC
Confidence 457899999998776 6889999999999977 6654 599999754
No 49
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.83 E-value=0.0046 Score=44.82 Aligned_cols=40 Identities=23% Similarity=0.715 Sum_probs=29.4
Q ss_pred ccccccCCcCCCCCCceeecCC-----Ccccchhhhccc----cccCCCcc
Q 016340 76 TCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWT----VLSCQVCR 117 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~-----H~F~~~Cl~~w~----~~~CP~Cr 117 (391)
.|-||++ .+. ...++..||. +.+|..|+.+|. ...||+|.
T Consensus 1 ~CrIC~~-~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889998 322 2344677885 789999999995 34799884
No 50
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0024 Score=65.96 Aligned_cols=46 Identities=33% Similarity=0.741 Sum_probs=34.7
Q ss_pred CCccccccCCcCCC-------------CCCceeecCCCcccchhhhcccc---ccCCCcccc
Q 016340 74 LPTCPICLERLDPD-------------TSGILSTICDHSFQCSCTAKWTV---LSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle~ld~~-------------~~g~it~~C~H~F~~~Cl~~w~~---~~CP~Cr~~ 119 (391)
-..|+||..-.+-- ...++.+||+|-||..|+.+|-+ ..||+||.-
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence 45799999764321 22356679999999999999963 589999863
No 51
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.003 Score=63.58 Aligned_cols=42 Identities=26% Similarity=0.803 Sum_probs=30.1
Q ss_pred CccccccCCcCCCCCCceee-cCCCcccchhhhccc---c--ccCCCcc
Q 016340 75 PTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT---V--LSCQVCR 117 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~---~--~~CP~Cr 117 (391)
..|.||.+.++.. --+..+ .|||.||..|+..|. . ..||.|+
T Consensus 5 A~C~Ic~d~~p~~-~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPND-HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccc-cccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4699997776432 222233 399999999999995 2 3788887
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.42 E-value=0.0059 Score=47.54 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=19.5
Q ss_pred CCccccccCCcC-CC-CCCce--eecCCCcccchhhhccc-------------cccCCCcccc
Q 016340 74 LPTCPICLERLD-PD-TSGIL--STICDHSFQCSCTAKWT-------------VLSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle~ld-~~-~~g~i--t~~C~H~F~~~Cl~~w~-------------~~~CP~Cr~~ 119 (391)
...|+||...+. .. ...++ ...|+..||..||..|. ...||.|+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 357999998764 21 11111 24689999999999993 1358888753
No 53
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=95.04 E-value=1.4 Score=45.69 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCcccchhhhccccccCCCccccccCCCCCcccccCcccceee-ecccccccccCCCCcccccccC-CCCCcccccC--C
Q 016340 97 DHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWV-CLICGFVGCGRYKEGHAVRHWK-DTQHWYSLDL--R 172 (391)
Q Consensus 97 ~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwi-CL~CG~vgCgr~~~~HA~~H~~-~t~H~~~~~l--~ 172 (391)
..+||..| .|++|.. + .+....-+|+ |-+||+. ++.+.|++|+. .+|-...-.. .
T Consensus 122 ~~gFC~~C-------~C~iC~k-f---------D~~~n~~~Wi~Cd~CgH~----cH~dCALr~~~i~~G~s~~g~~g~~ 180 (446)
T PF07227_consen 122 EPGFCRRC-------MCCICSK-F---------DDNKNTCSWIGCDVCGHW----CHLDCALRHELIGTGPSVKGSIGTL 180 (446)
T ss_pred CCCccccC-------CccccCC-c---------ccCCCCeeEEeccCCCce----ehhhhhcccccccCCccCCCCCccC
Confidence 35788888 7888865 3 1222234675 6666655 23455666654 2343332222 2
Q ss_pred CceeEecCCch
Q 016340 173 TQQIWDYVGDN 183 (391)
Q Consensus 173 t~~vwcy~cd~ 183 (391)
+...+|..|+.
T Consensus 181 d~~f~C~~C~~ 191 (446)
T PF07227_consen 181 DMQFHCRACGK 191 (446)
T ss_pred ceEEEccCCCC
Confidence 45566766664
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.02 E-value=2.2 Score=41.06 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--------------H-
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEE--------------Q- 339 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~E--------------Q- 339 (391)
++...++.++.+...++.++..+...-+.|.+++..++.++..++..........+.++..+.+ .
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555666666655555555666666666665555555444443333333333333 2
Q ss_pred HHhHhHhhhhHHHhhc
Q 016340 340 IRDLTVYIEAQKTLTN 355 (391)
Q Consensus 340 ~rDlmf~le~q~ki~~ 355 (391)
-.+|.++.+.+.+=++
T Consensus 173 ~~ell~~yeri~~~~k 188 (239)
T COG1579 173 DPELLSEYERIRKNKK 188 (239)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 2567777777666553
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.90 E-value=1.8 Score=42.62 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~ 315 (391)
|+..|..-|..|+..+.....+.+......+.. .....+..++.++..++.....+..--.+|......+...+
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 555566666666666655554433222211110 01112222333333333333322222223333344555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHH
Q 016340 316 KEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 351 (391)
Q Consensus 316 ~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ 351 (391)
.+++.+........+..|.+|+.++..|-.-+..+.
T Consensus 247 ~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 247 RELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 666666666666677888899998888877776553
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.012 Score=59.76 Aligned_cols=44 Identities=36% Similarity=0.890 Sum_probs=35.3
Q ss_pred CccccccCCcC-CCCCCceeecCCCcccchhhhccc----cccCCCccc
Q 016340 75 PTCPICLERLD-PDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRF 118 (391)
Q Consensus 75 ~tCpiCle~ld-~~~~g~it~~C~H~F~~~Cl~~w~----~~~CP~Cr~ 118 (391)
.||||||+-+. +...-++.+.|||.|-.+|+.+|. .+.||.|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 58999999874 334456778899999999999996 467888864
No 57
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.28 E-value=4.6 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhcc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
.|...||||...|.+| +.++|+|+.|..|-...
T Consensus 2 eeelkc~vc~~f~~ep----iil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP----IILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCc----eEeecccHHHHHHHHhh
Confidence 4788999999999887 78899999999998653
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.18 E-value=0.02 Score=42.85 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc----cccCCC
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQV 115 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~----~~~CP~ 115 (391)
+-..+|||.+..|.+| +.+..|+|+|....+..|. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457999999999877 2566899999999998875 456887
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.021 Score=58.68 Aligned_cols=46 Identities=28% Similarity=0.521 Sum_probs=38.1
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+.-...|.||...|.++ ++++|||+||..||.+-. ...||.||...
T Consensus 81 ~~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred ccchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCccccccc
Confidence 35577899999999887 677999999999987743 57899999764
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.10 E-value=0.032 Score=57.31 Aligned_cols=46 Identities=33% Similarity=0.645 Sum_probs=38.6
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
+.+...||+|...+.+|+ .++.|||.||..|+..|. ...||+|+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~---~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~ 65 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV---QTTTCGHRFCAGCLLESLSNHQKCPVCRQE 65 (391)
T ss_pred CcccccCccccccccCCC---CCCCCCCcccccccchhhccCcCCcccccc
Confidence 678899999999997662 235899999999999997 5699999764
No 61
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.066 Score=51.94 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=34.7
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhc---cc-cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT-VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~---w~-~~~CP~Cr~~~ 120 (391)
+...+||+|-+.=.-| .+..+|+|.||..|+.. |. ...||.|....
T Consensus 237 t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 4577999999975443 13456999999999987 44 57999997643
No 62
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.36 E-value=0.017 Score=63.91 Aligned_cols=47 Identities=32% Similarity=0.669 Sum_probs=33.2
Q ss_pred CCccccccCCcCC-CCC--CceeecCCCcccchhhhccc----cccCCCccccc
Q 016340 74 LPTCPICLERLDP-DTS--GILSTICDHSFQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~-~~~--g~it~~C~H~F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
...|+||-..++. .++ .-.-..|.|.||..|+-+|. .+.||.||...
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 4579999877651 100 01123589999999999994 67899999643
No 63
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.014 Score=46.07 Aligned_cols=26 Identities=35% Similarity=0.868 Sum_probs=22.5
Q ss_pred cCCCcccchhhhccc-----cccCCCccccc
Q 016340 95 ICDHSFQCSCTAKWT-----VLSCQVCRFCH 120 (391)
Q Consensus 95 ~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 120 (391)
.|.|.||..|+.+|. ...||+||..+
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 599999999999996 45799999765
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.02 E-value=3.5 Score=35.52 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhHhHhh
Q 016340 306 KNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 306 ~nq~~~~~~~~~le~~~~~~~~---~~~~~i~dL~EQ~rDlmf~l 347 (391)
+....++..+++++.+...++. +|.+++++|+--|.||--..
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777766655 46778888888888875443
No 65
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.31 E-value=6 Score=48.28 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=79.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 233 AIVDEYNRL--LATQLETQRQYYESLLAEAKSKRESLIP---ET--VEKAVASKMQDIQNELDICEEAKKAVADVNSKLI 305 (391)
Q Consensus 233 ~~~~Ey~~l--l~sqLesQR~yyE~~l~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~ 305 (391)
...++-... .++.||.+..-|++.|++.....+.... .+ -.+.....+..+...++.+.+.+..++..|+.|.
T Consensus 1418 d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~ 1497 (1930)
T KOG0161|consen 1418 DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS 1497 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 3777888888888888887765543211 11 1123455667777788877777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhHhHhhhhHHH
Q 016340 306 KNQEIMRKKFKEIEEREITS---LRLRDATILDLEEQIRDLTVYIEAQKT 352 (391)
Q Consensus 306 ~nq~~~~~~~~~le~~~~~~---~~~~~~~i~dL~EQ~rDlmf~le~q~k 352 (391)
..+..+...+.++..+..++ ++..+.++.||+.++-+++--+++.+-
T Consensus 1498 ~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1498 QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88888877777776555333 334556788888888888776666543
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.27 E-value=0.046 Score=47.78 Aligned_cols=35 Identities=26% Similarity=0.753 Sum_probs=30.4
Q ss_pred CCccccccCCcCCCCCCceeecCC------Ccccchhhhccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICD------HSFQCSCTAKWT 109 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~------H~F~~~Cl~~w~ 109 (391)
...|.||+++++. ..|++.++|+ |-||..|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4579999999988 7899999896 559999999993
No 67
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.25 E-value=0.038 Score=51.23 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=24.8
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
..|.||-.-|..| +.+.|||+||..|...
T Consensus 197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~ 225 (259)
T COG5152 197 FLCGICKKDYESP----VVTECGHSFCSLCAIR 225 (259)
T ss_pred eeehhchhhccch----hhhhcchhHHHHHHHH
Confidence 3899999999887 6778999999988644
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.08 E-value=0.027 Score=55.82 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=36.8
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+....+|++|--.|.++. .++-|-|+||..||-+.. ...||.|....
T Consensus 11 ~~n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred hcccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 3456789999999986542 344599999999998843 67899998754
No 69
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.07 E-value=4.7 Score=40.49 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHhHh
Q 016340 276 VASKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEER-------EITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~----~~ln~~L~~nq~~~~~~~~~le~~-------~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
..++.+.|+-+|+.+..|...- ..||+.|.+ -.+....|.++ ....++.+++.|..|+-.|+|||
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE----~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAE----ALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH----HHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666554322 334444433 22222233322 23456778889999999999999
Q ss_pred HhhhhHHHh
Q 016340 345 VYIEAQKTL 353 (391)
Q Consensus 345 f~le~q~ki 353 (391)
-=|.+-=.+
T Consensus 215 ~EirnLLQl 223 (401)
T PF06785_consen 215 YEIRNLLQL 223 (401)
T ss_pred HHHHHHHHh
Confidence 876554444
No 70
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.73 E-value=3.3 Score=43.93 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 250 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 329 (391)
Q Consensus 250 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~ 329 (391)
+.||+.+|.++..+....-++++ .....+..|..+|+..+++++. +...++....++..|++++..+....
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~--~f~~Ec~aL~~rL~~aE~ek~~-------l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAV--HFYAECRALQKRLESAEKEKES-------LEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 67888888888765432211111 2335666777777766665543 33344455556777777777777777
Q ss_pred HHHHhhHHHHHHhHhHhhhhH
Q 016340 330 DATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~q 350 (391)
++||..|-|+|--|.--|..|
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877766655544
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.61 E-value=0.11 Score=42.68 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=28.2
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhh
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 106 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~ 106 (391)
+.+...|++|...+.. +-+...||||.||..|..
T Consensus 75 i~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 4567789999999976 346788999999999975
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.86 E-value=0.13 Score=37.16 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred cccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccc
Q 016340 77 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 119 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~ 119 (391)
||+|.+.+|.....+..=+|+...|..|..... ...||.||..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 899999997654444444578888888976632 6799999863
No 73
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.79 E-value=4.8 Score=31.60 Aligned_cols=46 Identities=7% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
+..++..|+.+...+..+...++.-|..|..++..|..++..+=.+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777777778888888999999999998877665443
No 74
>PRK09039 hypothetical protein; Validated
Probab=90.46 E-value=12 Score=37.80 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQI 340 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~ 340 (391)
+..|+.+++.++..+..++..-..+.+.....+.+++.++.++..++..+..+++.++.++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444443333333333333344455555555555555444444444444444
No 75
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.28 E-value=0.13 Score=50.32 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=36.2
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhcc--ccccCCCccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 118 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w--~~~~CP~Cr~ 118 (391)
...||+|.+.+......+..++|+|..|..|+... ....||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34599999987555555567899999999999884 3689999988
No 76
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.13 E-value=0.23 Score=49.34 Aligned_cols=108 Identities=24% Similarity=0.390 Sum_probs=62.1
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecC--CCcccchhhhccccccCCCccccccCC-----------CCCccc------
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAKWTVLSCQVCRFCHQQD-----------ERPTCS------ 129 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C--~H~F~~~Cl~~w~~~~CP~Cr~~~~~~-----------~~~~C~------ 129 (391)
....++..||||.+.+.+| ...| ||--|..|-.+ ....||.||...+.- ...+|.
T Consensus 43 ~~~~~lleCPvC~~~l~~P-----i~QC~nGHlaCssC~~~-~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC 116 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPP-----IFQCDNGHLACSSCRTK-VSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGC 116 (299)
T ss_pred ccchhhccCchhhccCccc-----ceecCCCcEehhhhhhh-hcccCCccccccccHHHHHHHHHHHhceecccccccCC
Confidence 3456789999999999887 4457 45555555432 256899999765320 011221
Q ss_pred --------------ccCcccceeeec----ccccccccCCCCcccccccCCCCCcccc-cCCCceeEecCCchhhhhhh
Q 016340 130 --------------VCGTVENLWVCL----ICGFVGCGRYKEGHAVRHWKDTQHWYSL-DLRTQQIWDYVGDNYVHRLN 189 (391)
Q Consensus 130 --------------~C~~~~~lwiCL----~CG~vgCgr~~~~HA~~H~~~t~H~~~~-~l~t~~vwcy~cd~~Vhrl~ 189 (391)
.|.. .+|-|. .|.+.| + ..--..|+..+ |..-+ .+.+.+++++..|.+.+.+.
T Consensus 117 ~~~~~Y~~~~~HE~~C~f--~~~~CP~p~~~C~~~G--~--~~~l~~H~~~~-hk~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
T KOG3002|consen 117 TKSFPYGEKSKHEKVCEF--RPCSCPVPGAECKYTG--S--YKDLYAHLNDT-HKSDIITLTGFDFVFVATDENLLGAA 188 (299)
T ss_pred ceeecccccccccccccc--CCcCCCCCcccCCccC--c--HHHHHHHHHhh-ChhhhhhccccceecccCCccccccc
Confidence 1221 344333 232222 1 12223466555 77744 56667899999888876543
No 77
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.96 E-value=0.08 Score=53.67 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=37.9
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhc----cccccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAK----WTVLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~----w~~~~CP~Cr~~~ 120 (391)
...|..|-+++..-...+-.+||.|-||..|+.. ..+.+||.||...
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5689999999865445566789999999999985 3478999999643
No 78
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=8.3 Score=35.98 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---H
Q 016340 242 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAV---ASKMQDIQNELDICEEA---KKAVADVNSKLIKNQEIM---R 312 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~e---~~~~~~ln~~L~~nq~~~---~ 312 (391)
-+++|+.|-.-|-.+|...+.--.. .+++..+ .++-+-++.+.+.|... ...+.--+++|...+... +
T Consensus 34 KIskLDaeL~k~~~Qi~k~R~gpaq---~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK 110 (218)
T KOG1655|consen 34 KISKLDAELCKYKDQIKKTRPGPAQ---NALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMK 110 (218)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877432221 2332211 12222233333333321 112223344555554432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 313 KKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 313 ~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
.-.+++.... .+.+=++|++|++++.|+|=
T Consensus 111 ~~~k~mK~~y---kkvnId~IedlQDem~Dlmd 140 (218)
T KOG1655|consen 111 DTNKEMKKQY---KKVNIDKIEDLQDEMEDLMD 140 (218)
T ss_pred HHHHHHHHHH---ccCCHHHHHHHHHHHHHHHH
Confidence 2222222221 12223689999999999885
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.85 E-value=13 Score=32.80 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 308 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
-+++..+++.|+.+.. .-+.++.+|..+.+++
T Consensus 110 ae~~eRkv~~le~~~~----~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 110 AEHFERKVKALEQERD----QWEEKYEELEEKYKEA 141 (143)
T ss_pred hHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHh
Confidence 3344445555544322 2234556666665543
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.66 E-value=20 Score=34.54 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 230 KVEAIVDEYNRLLATQLETQRQYYESLLAEAK 261 (391)
Q Consensus 230 K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~ 261 (391)
++|.....+....+ +++.++....++..
T Consensus 14 ~lD~e~~rl~~~~~----~~~~~l~k~~~e~e 41 (239)
T COG1579 14 KLDLEKDRLEPRIK----EIRKALKKAKAELE 41 (239)
T ss_pred HHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Confidence 44444444444444 55666665544444
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.40 E-value=2.9 Score=44.70 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 290 CEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 290 ~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
+...+..+...|..|.+.++.++-++.+-.......+..|+.+|..|.|+..-||.=+
T Consensus 308 Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 308 LRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred hhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444455666666666666666655555555666677788888887766666543
No 82
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=89.17 E-value=4.2 Score=42.45 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhh
Q 016340 308 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~ 349 (391)
+++++.++...-.+.-.-.+.|++-+..|+-||+||-.||.=
T Consensus 204 teelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF 245 (621)
T KOG3759|consen 204 TEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF 245 (621)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555667888899999999999999854
No 83
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.09 E-value=0.14 Score=50.21 Aligned_cols=41 Identities=24% Similarity=0.551 Sum_probs=33.7
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 118 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~ 118 (391)
+.||.|.-++..+. -|.-|+|.||..||.... +..||.|..
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 78999999997763 355689999999998743 789999975
No 84
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.02 E-value=19 Score=41.34 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
.+..++.++++++..++.|...++.++..|...+..++.++...+++..
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556677788888888888888888888999888888888877766653
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.01 E-value=14 Score=31.94 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhh
Q 016340 278 SKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~----~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~ 349 (391)
..+..++.++..++.+...+ ......|......|..+-..++.+... ....+.||.+|++=|--.|++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~----~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE----LEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444433332 234456777778888877777766543 345788999998887766653
No 86
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.90 E-value=0.075 Score=52.18 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=27.0
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhcc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
.-.|.|||--|.+. ..++.+.|.|.||..|+.+.
T Consensus 115 ~gqCvICLygfa~~-~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 115 NGQCVICLYGFASS-PAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCceEEEEEeecCC-CceeeehhHHHHHHHHHHHH
Confidence 44799999999653 34677889999999999653
No 87
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=0.18 Score=49.52 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=30.7
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhcc--ccccCCCccc
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 118 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w--~~~~CP~Cr~ 118 (391)
.|.||-..|..| +.+.|+|.||..|-..- ....|++|..
T Consensus 243 ~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 243 KCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred cccccccccccc----hhhcCCceeehhhhccccccCCcceeccc
Confidence 699999999776 67789999999997652 2467777754
No 88
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=0.12 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.827 Sum_probs=20.9
Q ss_pred cCCCcccchhhhccc--cccCCCccc
Q 016340 95 ICDHSFQCSCTAKWT--VLSCQVCRF 118 (391)
Q Consensus 95 ~C~H~F~~~Cl~~w~--~~~CP~Cr~ 118 (391)
.|+|.||.-|+.+|. .-.||.|..
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 599999999999996 568999865
No 89
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.70 E-value=0.52 Score=45.72 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-~~~CP~Cr~~~ 120 (391)
.....|||....|.....-+...+|||.|...++.... ...||+|-..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f 160 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPF 160 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcc
Confidence 34668999999996544444566899999999998775 55677775543
No 90
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.62 E-value=17 Score=33.57 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHHhHhHhhh
Q 016340 327 RLRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~le 348 (391)
+...++|.-|+.+.+-|..+|+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777666665554
No 91
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.62 E-value=7.6 Score=37.24 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=28.7
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCcccc
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~ 119 (391)
-|-.|.-+=. -.+...+.|.|.||..|...-....||.|+..
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ 46 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASSPDVCPLCKKS 46 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCCccccccccce
Confidence 4666665444 23455677999999999866544578888764
No 92
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=88.41 E-value=0.053 Score=55.05 Aligned_cols=87 Identities=22% Similarity=0.383 Sum_probs=56.6
Q ss_pred HHHHHHhcCcccCCCCcccceEEEEeEEEEeecccccCCCCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 28 DEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 28 ~~f~~~~ng~~f~s~e~e~C~v~~v~~v~~~~~~~~~~~~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
+-||..=+|+.+|.--...|..---.+|.++..--...-...+. .-.|-||-|-=.+ +-.-||||-.|..|+..
T Consensus 325 eGFYlyPdGr~~npdLt~l~~~~p~d~i~VtqEQyeLYceMgsT--FeLCKICaendKd----vkIEPCGHLlCt~CLa~ 398 (563)
T KOG1785|consen 325 EGFYLYPDGRDQNPDLTGLCQPPPQDRIKVTQEQYELYCEMGST--FELCKICAENDKD----VKIEPCGHLLCTSCLAA 398 (563)
T ss_pred cceEECCCCccCCCChhhccCCCcccceeeeHHHHHHHHHccch--HHHHHHhhccCCC----cccccccchHHHHHHHh
Confidence 45777779999887666677655455555544211000011111 2369999886544 23457999999999999
Q ss_pred cc----cccCCCccccc
Q 016340 108 WT----VLSCQVCRFCH 120 (391)
Q Consensus 108 w~----~~~CP~Cr~~~ 120 (391)
|. .-.||.||...
T Consensus 399 WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 399 WQDSDEGQTCPFCRCEI 415 (563)
T ss_pred hcccCCCCCCCceeeEe
Confidence 96 34799999854
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=0.22 Score=54.92 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=34.4
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
...+|..|--.++-| .+-..|+|+||+.|+.. ....||.|+.
T Consensus 839 q~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e~-~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP---FVHFLCGHSYHQHCLED-KEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccc---eeeeecccHHHHHhhcc-CcccCCccch
Confidence 457999999999876 36778999999999972 2568999975
No 94
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=88.22 E-value=16 Score=35.24 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 251 QYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKK---AVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 251 ~yyE~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~e~~---~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
.-|+..|.++..+.+..+.++... ++.......+.+..++.++.. ...-+.++..+....|...+.++...
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i 119 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAI 119 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777666655444433221 111122333333333332211 11233333444444444444444333
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 322 EITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 322 ~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
.........+.++++++++-||.+-+
T Consensus 120 ~~~a~~~~~~~l~~~e~el~~La~~i 145 (255)
T TIGR03825 120 VEEAKDDYEEKIESAQPLIIELACAL 145 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445555666666655443
No 95
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=87.78 E-value=27 Score=37.58 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 231 VEAIVDEYNRLLATQLETQRQY 252 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQR~y 252 (391)
+..+..+-..-+...|+.|+.-
T Consensus 267 l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 267 LAELKEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455666666654
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=0.3 Score=46.85 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhcc--ccccCCCccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 118 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w--~~~~CP~Cr~ 118 (391)
....||||.+.|...+.-.+.-+|||.|+..|+.+. .+..||+|-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~ 267 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDK 267 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCC
Confidence 455799999999887666667789999999999995 4889999854
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.46 E-value=0.22 Score=49.68 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=37.4
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
|..-||.|.|.||-.......-+||.-.|+-|..... ...||.||...
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 5566999999998766666667788888888865543 78999999754
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.42 E-value=36 Score=36.66 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLA 243 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~ 243 (391)
...+++.+..|-..|+.
T Consensus 141 lQ~qlE~~qkE~eeL~~ 157 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLK 157 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666653
No 99
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.39 E-value=36 Score=36.06 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 243 ATQLETQRQYYESLLAEAK 261 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~~~~ 261 (391)
...|++|-..++..+.+++
T Consensus 308 i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 308 LKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555433
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.11 E-value=16 Score=38.26 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=40.6
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cHH----------HHHHHHHHHHHHHHHHH
Q 016340 221 GISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL---IPE----------TVEKAVASKMQDIQNEL 287 (391)
Q Consensus 221 ~~~~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~---~~~----------~~~~~~~~~~~~l~~~l 287 (391)
.....+.+.=++.+..++...-.+...+-+.|++..+.+++++.+.. +.. ........++..++.++
T Consensus 134 ~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l 213 (498)
T TIGR03007 134 ELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEEL 213 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHH
Confidence 33333444434445444444455666677888888888777654321 110 00112335566666666
Q ss_pred HHHHHHHHHHH
Q 016340 288 DICEEAKKAVA 298 (391)
Q Consensus 288 ~~~~~e~~~~~ 298 (391)
..++.++..++
T Consensus 214 ~~~~~~l~~~~ 224 (498)
T TIGR03007 214 EAARLELNEAI 224 (498)
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=0.24 Score=48.94 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=37.2
Q ss_pred eecCCCcccchhhhccccccCCCccccccCCCCCcccccCcccceeeecccccccccCC
Q 016340 93 STICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 151 (391)
Q Consensus 93 t~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vgCgr~ 151 (391)
.++|.|.||..|-..-.+..||.|---.+. -..| ....+++|- +..||-|.
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr-----Ieq~-~~g~iFmC~--~~~GC~RT 156 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQR-----IEQI-MMGGIFMCA--APHGCLRT 156 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHH-----HHHh-cccceEEee--cchhHHHH
Confidence 678999999999877668899999653321 1233 345788888 78889773
No 102
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.73 E-value=34 Score=37.85 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Q 016340 236 DEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDI 283 (391)
Q Consensus 236 ~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (391)
.+...-+..|+|.|-.-||..+....+..+.++. ++++...+.+.++
T Consensus 811 qqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~Eme-nlErqQkq~iE~~ 857 (1187)
T KOG0579|consen 811 QQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEME-NLERQQKQEIEDT 857 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHH
Confidence 3444455667777777777665555544433332 3444333333333
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.69 E-value=39 Score=33.79 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 326 LRLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
+...+++|+++.++..++.--|..-+++..
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557899999999999998888777765
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.51 E-value=34 Score=38.15 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=5.2
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
+++.+++++++|
T Consensus 640 EL~~~~~~l~~l 651 (717)
T PF10168_consen 640 ELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 105
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.26 E-value=0.39 Score=52.77 Aligned_cols=41 Identities=34% Similarity=0.673 Sum_probs=33.1
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhc-cc---cccCCCccccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFCH 120 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~-w~---~~~CP~Cr~~~ 120 (391)
..|++|++ .+.. +.++|+|.||..|+.. |. ...||.||...
T Consensus 455 ~~c~ic~~-~~~~----~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSF----FITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccc----eeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 79999999 5554 6678999999999987 43 45799998653
No 106
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.21 E-value=17 Score=34.79 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 285 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 320 (391)
Q Consensus 285 ~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~ 320 (391)
.+++.+.+|+..|..-++.|....+..+.+++.++.
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444433344444444444444444443
No 107
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.16 E-value=43 Score=34.95 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 235 VDEYNRLLA--TQLETQRQYYESLLAEAKSKR---ESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 298 (391)
Q Consensus 235 ~~Ey~~ll~--sqLesQR~yyE~~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~ 298 (391)
..||..|.. .-||.|++--|..-.+.-.+. -++|--.+++.+.-....++.++..+..|...++
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelR 317 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELR 317 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766 567888877775544432211 1223223344344444445555554444444333
No 108
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.15 E-value=0.42 Score=52.84 Aligned_cols=45 Identities=29% Similarity=0.653 Sum_probs=35.1
Q ss_pred CCCccccccCCcCCCCCCceeec---CCCcccchhhhccc---------cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAKWT---------VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~---C~H~F~~~Cl~~w~---------~~~CP~Cr~~~ 120 (391)
....|-||.|+++... -+++ |=|.||..||..|. ...||.|+++.
T Consensus 190 ~~yeCmIC~e~I~~t~---~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTA---PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccC---CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4567999999997642 2344 56999999999995 46899999765
No 109
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.53 E-value=15 Score=36.71 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=49.2
Q ss_pred HHHHHHHhhhcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 256 LLAEAKSKRESLIPETVEK-AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATIL 334 (391)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~ 334 (391)
.|.++++++.+. ++.+ ++.+.-..|..+++.|+..+. ++-+.|..-+...+.++.+++ +++........++.
T Consensus 85 ~l~evEekyrkA---Mv~naQLDNek~~l~yqvd~Lkd~le---e~eE~~~~~~re~~eK~~elE-r~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 85 SLAEVEEKYRKA---MVSNAQLDNEKSALMYQVDLLKDKLE---ELEETLAQLQREYREKIRELE-RQKRAHDSLREELD 157 (302)
T ss_pred HHHHHHHHHHHH---HHHHhhhchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 355555555442 2211 233344556667776665543 444456666666677777775 45555566667888
Q ss_pred hHHHHHHhHhHhh
Q 016340 335 DLEEQIRDLTVYI 347 (391)
Q Consensus 335 dL~EQ~rDlmf~l 347 (391)
+|++||+..--.|
T Consensus 158 ~Lre~L~~rdeli 170 (302)
T PF09738_consen 158 ELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887654444
No 110
>PRK11637 AmiB activator; Provisional
Probab=84.47 E-value=13 Score=38.41 Aligned_cols=13 Identities=8% Similarity=-0.089 Sum_probs=5.4
Q ss_pred HHhhHHHHHHhHh
Q 016340 332 TILDLEEQIRDLT 344 (391)
Q Consensus 332 ~i~dL~EQ~rDlm 344 (391)
+|..+++++.+++
T Consensus 118 ~l~~~~~~l~~rl 130 (428)
T PRK11637 118 QQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.43 E-value=34 Score=32.79 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=9.8
Q ss_pred HHHHHHhHhHhhhhHHHh
Q 016340 336 LEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 336 L~EQ~rDlmf~le~q~ki 353 (391)
+-|++|-||-.+......
T Consensus 147 ~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 147 LAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666666555444443
No 112
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.41 E-value=13 Score=28.61 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~ 322 (391)
++.|.++++.+-.--..++.-|..|...+..|...-..+-++.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666777777777777766544444443
No 113
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.21 E-value=7.6 Score=39.28 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHh
Q 016340 307 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 307 nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~ 346 (391)
..+.++.+++..+.+. +...+++.-|+|-|+||-.-
T Consensus 253 Ere~LRAel~ree~r~----K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 253 EREFLRAELEREEKRQ----KMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhh
Confidence 3344444444443333 23335788888888888653
No 114
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.16 E-value=27 Score=37.61 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 297 VADVNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 297 ~~~ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
+..-+..|.......+.++.++++...
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555655555443
No 115
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.11 E-value=29 Score=39.03 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016340 242 LATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~ 264 (391)
|...|+.||.-+|.+..++++..
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~ 543 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALL 543 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877776543
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.01 E-value=72 Score=35.03 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016340 231 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~ 264 (391)
+..++.||..+ ..+|..-+.-|..++.++..+.
T Consensus 6 l~qlq~Erd~y-a~~lk~e~a~~qqr~~qmseev 38 (617)
T PF15070_consen 6 LKQLQAERDQY-AQQLKEESAQWQQRMQQMSEEV 38 (617)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777663 4455555666676776665543
No 117
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=83.97 E-value=0.27 Score=51.76 Aligned_cols=43 Identities=21% Similarity=0.639 Sum_probs=33.4
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-------cccCCCccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-------VLSCQVCRF 118 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-------~~~CP~Cr~ 118 (391)
.+...|.+|.|.-.+. +...|.|.||..|+.... .-.||+|..
T Consensus 534 k~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred cCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 4567899999988665 677899999999996642 457888844
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.93 E-value=39 Score=33.81 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q 016340 246 LETQRQYYESL 256 (391)
Q Consensus 246 LesQR~yyE~~ 256 (391)
|++...|||=+
T Consensus 128 l~ak~~WYeWR 138 (312)
T smart00787 128 LEAKKMWYEWR 138 (312)
T ss_pred HHHHHHHHHHH
Confidence 45788888833
No 119
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=83.77 E-value=23 Score=34.11 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
.+.+|.++-++|..|-+.|+.+|++|...+.++...++.+.++
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444445555555556677777766555555555444443
No 120
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.73 E-value=30 Score=30.37 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016340 242 LATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~ 264 (391)
+..+++..+.-|+..|.++..+.
T Consensus 53 ~~~ea~~~~~e~e~~l~~Ar~eA 75 (141)
T PRK08476 53 NSSDVSEIEHEIETILKNAREEA 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443
No 121
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=16 Score=30.88 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=13.2
Q ss_pred HHHHHHhhHHHHHHhHh
Q 016340 328 LRDATILDLEEQIRDLT 344 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlm 344 (391)
....+|..|++||+||-
T Consensus 87 ~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 87 ELTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34468899999999974
No 122
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.49 E-value=25 Score=39.88 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEA---KKAVADVNSKLIKNQEI 310 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e---~~~~~~ln~~L~~nq~~ 310 (391)
.+.=.|++++.-|+++ +.++++||+-|.++..+
T Consensus 455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRE 490 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333566666666654 34456777777665544
No 123
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=83.44 E-value=18 Score=31.65 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHHhhHHHHHHhHhHhhhhHHHhhccCCCCCcCCcEEe
Q 016340 328 LRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 368 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~le~q~ki~~~~~~~ei~~g~i~ 368 (391)
..++++.++.|+.+-|.|.++.-+++. -+.||..|+|-
T Consensus 64 q~~~e~~~r~e~k~~l~~ql~qv~~L~---lgsEv~qg~vE 101 (131)
T PF11068_consen 64 QFEQEKQERLEQKNQLLQQLEQVQKLE---LGSEVVQGQVE 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----TT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEeeeeeE
Confidence 344677888888888988887666664 46789999883
No 124
>PRK12704 phosphodiesterase; Provisional
Probab=83.38 E-value=58 Score=34.92 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=5.6
Q ss_pred CcCCcEEeecC
Q 016340 361 GIKGGTVLPVS 371 (391)
Q Consensus 361 ei~~g~i~~~~ 371 (391)
-+.+-+|.+++
T Consensus 205 ~~~e~~~~~v~ 215 (520)
T PRK12704 205 HVAETTVSVVN 215 (520)
T ss_pred hhhhhceeeee
Confidence 35555554444
No 125
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.18 E-value=13 Score=39.12 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHhHhHhhhh
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI----EEREITSLRLRDATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l----e~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~ 349 (391)
.++++++.++..+..+-+.+++-|+.|++.+.....+|... ..++.........++..|+.++.||+-.|+.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555666666655555566666665544444443322 1111111222234555666667776655543
No 126
>PRK09039 hypothetical protein; Validated
Probab=83.07 E-value=32 Score=34.87 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhHh
Q 016340 304 LIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLT 344 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~~~~~~---~~~~~i~dL~EQ~rDlm 344 (391)
|...++.++.++..++..+..+.. ..+.+|.+|+..|+..+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666655543332 23456666666666555
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.90 E-value=32 Score=30.20 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 285 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 285 ~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
.+...+..+.+.+...++.+.+....++..+..........++.++.+|..|++++.
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333344444444444444545555555555555666667778889999998874
No 128
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.72 E-value=45 Score=35.40 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 305 IKNQEIMRKKFKEIE 319 (391)
Q Consensus 305 ~~nq~~~~~~~~~le 319 (391)
.+.++.++.++.+.+
T Consensus 146 ~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 146 REQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 129
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.51 E-value=32 Score=37.06 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=8.5
Q ss_pred HhcCcccCCCCccc
Q 016340 33 NLNGKRFSPAEAEV 46 (391)
Q Consensus 33 ~~ng~~f~s~e~e~ 46 (391)
.++|.|+..+.|..
T Consensus 13 r~t~~p~~~i~P~~ 26 (581)
T KOG0995|consen 13 RGTGTPSGGINPTK 26 (581)
T ss_pred ccccCCCCCCCCCC
Confidence 45666776666643
No 130
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.38 E-value=43 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQ 251 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~ 251 (391)
.....|...|+......|+-.+.
T Consensus 9 ~af~~iK~YYndIT~~NL~lIks 31 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKS 31 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888899988888875443
No 131
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.21 E-value=57 Score=38.39 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=8.4
Q ss_pred HHhhHHHHHHhHhHhhh
Q 016340 332 TILDLEEQIRDLTVYIE 348 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le 348 (391)
.+..+++.+.++...++
T Consensus 468 ~~~~~~~~~~~~~~~l~ 484 (1163)
T COG1196 468 ELAELQEELQRLEKELS 484 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555444
No 132
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.99 E-value=0.23 Score=53.35 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=36.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
..+++..|+||+.+|....--.+.+.|||+.|..|+...-..+|| |..
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence 456788999998776332222268889999999999887778899 544
No 133
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.73 E-value=82 Score=39.06 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 283 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS---LRLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 283 l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~---~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
+..++..++++...+.+-+.+|.+.-..+..++.++...+... .+...+.+..|+.+|.|+--.|+.+++...
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM 1037 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555444444444333332222111 112234567777778887777777666543
No 134
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=81.72 E-value=45 Score=35.28 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=7.1
Q ss_pred HHHHHhHhHhhhhHHH
Q 016340 337 EEQIRDLTVYIEAQKT 352 (391)
Q Consensus 337 ~EQ~rDlmf~le~q~k 352 (391)
.-|.-.||--+-.++-
T Consensus 388 ~~~~~~L~k~V~~~~l 403 (622)
T COG5185 388 NIQSDKLTKSVKSRKL 403 (622)
T ss_pred cchHHHHHHHHHhHHH
Confidence 3344445544444333
No 135
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.61 E-value=0.7 Score=46.57 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=29.3
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc-cccCCCcccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-VLSCQVCRFC 119 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-~~~CP~Cr~~ 119 (391)
-.+.|.||++-..+. +-+||||.-| |..-.. ...||+||..
T Consensus 304 ~p~lcVVcl~e~~~~----~fvpcGh~cc--ct~cs~~l~~CPvCR~r 345 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA----VFVPCGHVCC--CTLCSKHLPQCPVCRQR 345 (355)
T ss_pred CCCceEEecCCccce----eeecCCcEEE--chHHHhhCCCCchhHHH
Confidence 356899999987653 7889999966 543322 3569999863
No 136
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.46 E-value=23 Score=35.47 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 016340 248 TQRQYYESLLAEAK 261 (391)
Q Consensus 248 sQR~yyE~~l~~~~ 261 (391)
..|..|..-|.++.
T Consensus 23 ~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 23 KERDTYQEFLKKLE 36 (314)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555554444
No 137
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.31 E-value=84 Score=33.94 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
..+.+....+|..+.+.++-. -|..|.++++.
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~----ie~~L~~ae~~ 90 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPE----IEEQLFEAEEY 90 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHH
Confidence 466788888999888777644 45566655543
No 138
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.75 E-value=62 Score=37.18 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 016340 243 ATQLETQRQYYESLLA-EAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV--------ADVNSKLIKNQEIMRK 313 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~--------~~ln~~L~~nq~~~~~ 313 (391)
..++++|+.|||..|- ++..+......+++. .+..++.+|..++..+.+++..+ -.||..|......+..
T Consensus 757 l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~-kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ 835 (1200)
T KOG0964|consen 757 LHKLESQSNYFESELGSELFSQLTPEELERLS-KLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQ 835 (1200)
T ss_pred HHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4578899999996654 343433322222222 34455566666666555543332 2455555444333332
Q ss_pred HHHH-------------------HHHHHHHH---HHHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 314 KFKE-------------------IEEREITS---LRLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 314 ~~~~-------------------le~~~~~~---~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
.+.. .+.+...+ ++..+..|.++..+++++|+-++....+..
T Consensus 836 ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek 899 (1200)
T KOG0964|consen 836 EIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEK 899 (1200)
T ss_pred HhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11111111 112345677777788888888877766654
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.66 E-value=33 Score=37.27 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=10.7
Q ss_pred CcCCcEEeecCCCCCC
Q 016340 361 GIKGGTVLPVSYQQSS 376 (391)
Q Consensus 361 ei~~g~i~~~~~~~~~ 376 (391)
.|++|.|+.+-.++..
T Consensus 541 gik~GDvi~v~~~sG~ 556 (652)
T COG2433 541 GIKEGDVILVEDPSGG 556 (652)
T ss_pred ccccCcEEEEEcCCCc
Confidence 5899999866444433
No 140
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=0.76 Score=46.28 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=33.3
Q ss_pred CCccccccCCcCCCCCCceeecCCCc-ccchhhhccc--cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
--.|-||+.-..+. +.+||.|- .|..|..... .-.||+||.-.
T Consensus 290 gkeCVIClse~rdt----~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 290 GKECVICLSESRDT----VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred CCeeEEEecCCcce----EEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 45799999988664 78999997 5777876644 56899999743
No 141
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.38 E-value=59 Score=31.73 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 331 ATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
+.+..|++.-|||-.-|..+.|-.+
T Consensus 164 esvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5788999999999998888886643
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.33 E-value=32 Score=29.09 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 291 EEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSL 326 (391)
Q Consensus 291 ~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~ 326 (391)
.++++.|+..+..|+........++.+|+.+..++.
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555445544444444333
No 143
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=1 Score=44.07 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=35.1
Q ss_pred CCccccccCCcCCC--CCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 74 LPTCPICLERLDPD--TSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~--~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.|.|-||-+-|... .-+...+.|||+||..|..+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57899999988543 2222356699999999998853 45789999864
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.95 E-value=37 Score=32.55 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=8.0
Q ss_pred HHHhhHHHHHH-hHhHhhh
Q 016340 331 ATILDLEEQIR-DLTVYIE 348 (391)
Q Consensus 331 ~~i~dL~EQ~r-Dlmf~le 348 (391)
.-+..|++.|. |+=|..+
T Consensus 109 ~m~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 109 QMIDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHHHhcCCCCChH
Confidence 34444544444 4444333
No 145
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.92 E-value=33 Score=28.31 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQE---IMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~---~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
....+..++......+....+.+.+....|..... ....++.+||+ +....|+-..+|+.+++.
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~----~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ----TVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 34445555555555555554444444444433222 22223333332 233455666666666654
No 146
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.82 E-value=27 Score=33.16 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=4.9
Q ss_pred HHhhHHHHH
Q 016340 332 TILDLEEQI 340 (391)
Q Consensus 332 ~i~dL~EQ~ 340 (391)
+...|++||
T Consensus 201 e~~~Lq~~i 209 (216)
T KOG1962|consen 201 EYSKLQEQI 209 (216)
T ss_pred HHHHHHHHH
Confidence 445566665
No 147
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.73 E-value=19 Score=33.52 Aligned_cols=14 Identities=14% Similarity=0.591 Sum_probs=6.3
Q ss_pred HHHHHhhHHHHHHh
Q 016340 329 RDATILDLEEQIRD 342 (391)
Q Consensus 329 ~~~~i~dL~EQ~rD 342 (391)
+++++..++++++.
T Consensus 94 ~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 94 KDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 148
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=0.94 Score=42.97 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=36.5
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc----------cccCCCcccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----------VLSCQVCRFC 119 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~----------~~~CP~Cr~~ 119 (391)
-..|.|..|---+....+ +-+.|-|-||-.|+..|. ...||.|...
T Consensus 48 DY~pNC~LC~t~La~gdt--~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDT--TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred CCCCCCceeCCccccCcc--eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 358999999998865432 567899999999999984 4589999753
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.58 E-value=80 Score=36.96 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHhHhH-hhhhHHHhh
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR---DATILDLEEQIRDLTV-YIEAQKTLT 354 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~---~~~i~dL~EQ~rDlmf-~le~q~ki~ 354 (391)
.++.+...++..+.+++.|.+.-.++.........++++.++-..++.+.. ..+++++++++.+|+- -|+...|+.
T Consensus 943 ~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e 1022 (1293)
T KOG0996|consen 943 KLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLE 1022 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 344444444444445444444333444444444555555544443333322 2467788888888888 777777777
Q ss_pred cc
Q 016340 355 NM 356 (391)
Q Consensus 355 ~~ 356 (391)
++
T Consensus 1023 ~~ 1024 (1293)
T KOG0996|consen 1023 AI 1024 (1293)
T ss_pred HH
Confidence 64
No 150
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.51 E-value=57 Score=32.79 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016340 243 ATQLETQRQYYESLLAEAKSKRE 265 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~~~~~~~~ 265 (391)
.......+.|.+..+.+++.+.+
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~ 187 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLN 187 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888877653
No 151
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.25 E-value=39 Score=35.84 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016340 246 LETQRQYYESLLAEAKSK 263 (391)
Q Consensus 246 LesQR~yyE~~l~~~~~~ 263 (391)
|+.|+.+.+..+..+.+.
T Consensus 304 l~d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTA 321 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 152
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=78.96 E-value=62 Score=30.94 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 016340 250 RQYYESLLAEAK 261 (391)
Q Consensus 250 R~yyE~~l~~~~ 261 (391)
|..-+.++..+.
T Consensus 29 r~~ee~r~~~i~ 40 (247)
T PF06705_consen 29 REQEEQRFQDIK 40 (247)
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 153
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=78.89 E-value=51 Score=30.70 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHH
Q 016340 304 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 351 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ 351 (391)
+++....+.+|+++||.+..+++++ .-.+++|-+||+-+.
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE--------N~eLKElcl~LDeer 145 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE--------NLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHhccc
Confidence 3444455566777777666555442 123778889998876
No 154
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.66 E-value=81 Score=35.16 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhHHHHHHhHhHh
Q 016340 324 TSLRLRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 324 ~~~~~~~~~i~dL~EQ~rDlmf~ 346 (391)
..+..+|.+|.||+-.|.+||--
T Consensus 636 ~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 636 GQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566889999999999999873
No 155
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.65 E-value=38 Score=31.85 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 316 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~ 316 (391)
...++++++.........|++-|+.|.+.....++++.
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444445555555444444444433
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.61 E-value=43 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016340 242 LATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~ 264 (391)
-..++|.+..-+...++++....
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555666666655443
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.41 E-value=38 Score=31.85 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.8
Q ss_pred CcCCcEE
Q 016340 361 GIKGGTV 367 (391)
Q Consensus 361 ei~~g~i 367 (391)
.|.++-+
T Consensus 179 ~v~~~Gl 185 (206)
T PRK10884 179 GVAGIGL 185 (206)
T ss_pred HHHHHHH
Confidence 3444333
No 158
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.22 E-value=43 Score=30.35 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 354 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~ 354 (391)
.-|+.|......|+.+++.|+.++..+. +++..++|.-+-|+-.++--.++.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~----~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLR----QRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666665543332 244556666666666666555554
No 159
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.03 E-value=1e+02 Score=33.01 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.4
Q ss_pred CCcCCcEEeecCCC
Q 016340 360 DGIKGGTVLPVSYQ 373 (391)
Q Consensus 360 ~ei~~g~i~~~~~~ 373 (391)
+-+.+-+|.+++-|
T Consensus 198 ~~~~e~~~~~v~lp 211 (514)
T TIGR03319 198 DHVAETTVSVVNLP 211 (514)
T ss_pred hhhhhheeeeEEcC
Confidence 34566666555433
No 160
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=77.67 E-value=11 Score=27.99 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=10.6
Q ss_pred HHHHHHHHhhHHHHHHhHhH
Q 016340 326 LRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf 345 (391)
+......|.+||..|.|||-
T Consensus 30 iDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 30 IDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHCCHHHH-----
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 34444578889999999885
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=27 Score=37.89 Aligned_cols=41 Identities=10% Similarity=0.273 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le 319 (391)
.+.++..++++++.|.+.|+..++.|.+..+.++.++..+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444445444444444444443
No 162
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.43 E-value=81 Score=31.49 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYE 254 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE 254 (391)
+.+|++.+...|..++..-..-+|.+..
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~ 47 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKK 47 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999998776666665544
No 163
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.25 E-value=63 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 320 EREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 320 ~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
++...+....+.+|..|+||+++.+
T Consensus 168 eEy~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 168 EEYRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555556678888899888764
No 164
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.23 E-value=77 Score=34.26 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~ 264 (391)
..+.+....+|..+.+..|-. -|..|.+++...
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~----ie~~l~~ae~~~ 95 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPD----IEEQLFEAEELN 95 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHH
Confidence 467888999999998888765 566676666543
No 165
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.12 E-value=58 Score=29.65 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=8.0
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
+.|.++++++++|.+.+
T Consensus 85 d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 85 DSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544444
No 166
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=77.09 E-value=18 Score=38.88 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhHhHh
Q 016340 281 QDIQNELDICEEAKKAVADVNSKLIKNQEI-----------MRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~-----------~~~~~~~le~~~~~~~~---~~~~~i~dL~EQ~rDlmf~ 346 (391)
.+|++++.++++|++.++.- ...+.|+. .++++...| .+..+. ...+.+-+|||-||=--
T Consensus 353 ~Klee~i~elEEElk~~k~e--a~~ar~~~~~~e~ddiPmAqRkRFTRvE--MaRVLMeRNqYKErLMELqEavrWTE-- 426 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAE--AEDARQKAKDDEDDDIPMAQRKRFTRVE--MARVLMERNQYKERLMELQEAVRWTE-- 426 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccccccccHHHHhhhHHHH--HHHHHHHHhHHHHHHHHHHHHHhHHH--
Confidence 45677777777777666531 12222221 233333222 112222 23468889999988443
Q ss_pred hhhHHHhhccCCCCCcCCcEEe
Q 016340 347 IEAQKTLTNMTDSDGIKGGTVL 368 (391)
Q Consensus 347 le~q~ki~~~~~~~ei~~g~i~ 368 (391)
.+..-+..+.-++-+-|+|+
T Consensus 427 --MiRAsre~p~vqeKK~s~IW 446 (832)
T KOG2077|consen 427 --MIRASRENPAVQEKKRSSIW 446 (832)
T ss_pred --HHHHhhcCchhhhhccccHH
Confidence 33333333444666777775
No 167
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.73 E-value=65 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 233 AIVDEYNRLLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 233 ~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
+..+-...+=..+||.|..|.|..|...+++
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~r 127 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEAR 127 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677788899988888887776553
No 168
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.58 E-value=43 Score=34.76 Aligned_cols=6 Identities=33% Similarity=0.827 Sum_probs=2.4
Q ss_pred HHhHhH
Q 016340 340 IRDLTV 345 (391)
Q Consensus 340 ~rDlmf 345 (391)
+.||-|
T Consensus 133 ~~~l~~ 138 (459)
T KOG0288|consen 133 LKDLGL 138 (459)
T ss_pred hhhcch
Confidence 334443
No 169
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.37 E-value=38 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016340 309 EIMRKKFKEIEEREITSLRLRDATILDLEEQI 340 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~ 340 (391)
..++.++-+||......+...+++|..|.-++
T Consensus 42 ~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 42 QQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888778888888888776
No 170
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.28 E-value=36 Score=27.19 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
+...|.++.+.+...+..+..-|..|...+..|+.++..|
T Consensus 33 kn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 33 KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445557777888888888888766544
No 171
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.14 E-value=73 Score=36.53 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=10.8
Q ss_pred hhHHHHHHhHhHhhhhHHHhhcc
Q 016340 334 LDLEEQIRDLTVYIEAQKTLTNM 356 (391)
Q Consensus 334 ~dL~EQ~rDlmf~le~q~ki~~~ 356 (391)
++..|--++..-+++..+.-+.+
T Consensus 875 ~e~~e~tk~~~~~~~~~e~~k~s 897 (1018)
T KOG2002|consen 875 EEYRERTKEILKLPEIEEEKKKS 897 (1018)
T ss_pred HHHHHHHHHHHhccchHhhhhhc
Confidence 44444444555555444444443
No 172
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.78 E-value=0.5 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=29.6
Q ss_pred CccccccCCcCCCCCCceeecCCCc-ccchhhhc-cc--cccCCCcccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHS-FQCSCTAK-WT--VLSCQVCRFC 119 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~-w~--~~~CP~Cr~~ 119 (391)
..|.||.|.-.++ +...|||- .|..|-.. |. ...||.||..
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRap 52 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAP 52 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhH
Confidence 6899998865433 45569996 46677655 64 7899999974
No 173
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=75.65 E-value=1.5 Score=32.57 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.2
Q ss_pred eeecCCCcccchhhhccccccCCCccccc
Q 016340 92 LSTICDHSFQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 92 it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
+.++|+|.-+..|..-+..+.||.|..-+
T Consensus 21 ~~~pCgH~I~~~~f~~~rYngCPfC~~~~ 49 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERYNGCPFCGTPF 49 (55)
T ss_pred ccccccceeeccccChhhccCCCCCCCcc
Confidence 56789999999997777788999997643
No 174
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.52 E-value=76 Score=35.37 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.0
Q ss_pred HHHHHhhHHHHH
Q 016340 329 RDATILDLEEQI 340 (391)
Q Consensus 329 ~~~~i~dL~EQ~ 340 (391)
+++++..|++++
T Consensus 564 kee~~~~~e~~~ 575 (697)
T PF09726_consen 564 KEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 175
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=75.45 E-value=68 Score=29.61 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 235 VDEYNRLLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 235 ~~Ey~~ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
..||+.++.+.|.++- .|...+.+..++
T Consensus 34 TEEFSa~IG~vLd~yL-~yQKafnE~Mek 61 (189)
T TIGR02132 34 REEFSALMGNVLDLNL-FYQKALNDTTGN 61 (189)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5678888887777764 345555555444
No 176
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.40 E-value=58 Score=28.78 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVAD---VNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~---ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
+..+++.|+..++++...+..++. -......+.+.+..+|..||+++.
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 445666666666666655443321 111222334456666666666543
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.84 E-value=58 Score=36.69 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016340 232 EAIVDEYNRLLATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 232 e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~ 264 (391)
.....+.+.| ...|+.+|..+|.+..++++..
T Consensus 507 ~~~~~~~~~l-i~~L~~~~~~~e~~~~~~~~~~ 538 (771)
T TIGR01069 507 GEFKEEINVL-IEKLSALEKELEQKNEHLEKLL 538 (771)
T ss_pred HhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554 4678888888888877776543
No 178
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.76 E-value=93 Score=34.77 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
++..+.+|+.+|..++++..-...|-.-....=+++-.++.++...
T Consensus 638 v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrq 683 (717)
T PF09730_consen 638 VSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQ 683 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999998887655544444444433444444444333
No 179
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.61 E-value=1.3e+02 Score=32.40 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAE 259 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~ 259 (391)
+.-+..+..+|..|-. +|..++...+..+.+
T Consensus 250 ~~~i~~a~~~i~~L~~-~l~~l~~~~~~~l~~ 280 (582)
T PF09731_consen 250 NSLIAHAKERIDALQK-ELAELKEEEEEELER 280 (582)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455666777776654 555566655555544
No 180
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=74.45 E-value=5.9 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=17.7
Q ss_pred HHHHhhHHHHHHhHhHhhhh
Q 016340 330 DATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~ 349 (391)
++++.+|+..||||-++|+|
T Consensus 104 E~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 104 EKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999987
No 181
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=74.06 E-value=1.3 Score=33.38 Aligned_cols=34 Identities=29% Similarity=0.726 Sum_probs=27.7
Q ss_pred cccCCCccccccCCCCCcccccCcccceeeeccccccc
Q 016340 110 VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 147 (391)
Q Consensus 110 ~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vg 147 (391)
...||.|-... -.+|..|-...+.+.|..||+.|
T Consensus 27 ~F~CPnCGe~~----I~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 27 KFPCPNCGEVE----IYRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred EeeCCCCCcee----eehhhhHHHcCCceECCCcCccC
Confidence 45789996433 46899999999999999999986
No 182
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.92 E-value=1.9e+02 Score=34.07 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 016340 234 IVDEYNRLLATQLETQRQYYE--SLLAEAK 261 (391)
Q Consensus 234 ~~~Ey~~ll~sqLesQR~yyE--~~l~~~~ 261 (391)
+..|...+...----|+.+|+ .+++...
T Consensus 311 L~kenel~~~~~~~~q~~~~~~~~ki~~~~ 340 (1293)
T KOG0996|consen 311 LKKENELFRKKNKLCQYILYESRAKIAEMQ 340 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444453444446777887 3344433
No 183
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=73.82 E-value=81 Score=29.76 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHhH
Q 016340 308 QEIMRKKFKEIEEREITSLRL---RDATILDLEEQIRDL 343 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~~---~~~~i~dL~EQ~rDl 343 (391)
|...-.++..|+.+....+.. .+..+..|+.+|.+|
T Consensus 170 Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 170 QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433321 223455555555444
No 184
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.82 E-value=84 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=9.5
Q ss_pred HHhhHHHHHHhHhHhhh
Q 016340 332 TILDLEEQIRDLTVYIE 348 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le 348 (391)
.+..|+.+|-+|---|.
T Consensus 198 ~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655555444
No 185
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=73.76 E-value=2.2 Score=38.46 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=32.1
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCc-----ccchhhhccc----cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHS-----FQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~-----F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
...+.|-||.+--++ ...||.-. -|..|+..|. ...|+.|.+.+
T Consensus 6 ~~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 457899999877543 23577543 3999999995 56799998754
No 186
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=1.5 Score=44.27 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=31.7
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.|+..||||--.=. +. +-.||+|..|..||.+.. ...|=.|+...
T Consensus 420 sEd~lCpICyA~pi---~A-vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NA-VFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccc---hh-hccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 57889999975432 22 556899999999998853 45566665543
No 187
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.70 E-value=76 Score=34.27 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHhHhHhhhhHHHh
Q 016340 327 RLRDATILDLEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~le~q~ki 353 (391)
+.-+.+|+-|++++.++-.-+.++.+.
T Consensus 488 ~k~~~E~e~le~~l~~l~l~~~~~m~~ 514 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLNLKLVLNTSMKE 514 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777777777777666555444
No 188
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.65 E-value=1e+02 Score=34.66 Aligned_cols=45 Identities=33% Similarity=0.449 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHhHh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~---~~~~~~~~~i~dL~EQ~rDlm 344 (391)
+++++|. |.+.++-+++..|.+.. -.++.+|++|+.|+|=.|+|-
T Consensus 502 ev~eal~-~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 502 EVEEALV-NVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHH-HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4454443 34456666666665543 346678999999999988873
No 189
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.49 E-value=1.7 Score=42.70 Aligned_cols=42 Identities=29% Similarity=0.696 Sum_probs=29.5
Q ss_pred ccccccC-Cc-CCCCCCceeecCCCcccchhhhcc---ccccCCCccc
Q 016340 76 TCPICLE-RL-DPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRF 118 (391)
Q Consensus 76 tCpiCle-~l-d~~~~g~it~~C~H~F~~~Cl~~w---~~~~CP~Cr~ 118 (391)
.||+|-. ++ .|...-.+. +|+|..|-+|+... ++..||.|-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in-~C~H~lCEsCvd~iF~~g~~~CpeC~~ 48 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMIN-ECGHRLCESCVDRIFSLGPAQCPECMV 48 (300)
T ss_pred CCcccccceecCccceeeec-cccchHHHHHHHHHHhcCCCCCCcccc
Confidence 5999985 33 554433334 89999999999884 3677887744
No 190
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=72.65 E-value=1.8 Score=30.89 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=23.1
Q ss_pred cccccCCcCCCCCCceeecCCC-----cccchhhhccc----cccCCCc
Q 016340 77 CPICLERLDPDTSGILSTICDH-----SFQCSCTAKWT----VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H-----~F~~~Cl~~w~----~~~CP~C 116 (391)
|-||++--++.. .+..||.- ..|..||..|. ...|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 668888765432 36677753 46999999995 3567776
No 191
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.51 E-value=1.6e+02 Score=33.87 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016340 301 NSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 301 n~~L~~nq~~~~~~~~~le~~ 321 (391)
.++|+...+.+++++++|+-.
T Consensus 327 aesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 192
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=72.46 E-value=85 Score=29.36 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 230 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA 296 (391)
Q Consensus 230 K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~ 296 (391)
-.++-.-||..+|..-+||-|.-|-..++..... +..|++.+++ .-.-+.++++++.+-..+.++
T Consensus 100 E~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~R-e~~iak~m~K-~pq~~a~~~a~~~k~e~~a~a 164 (225)
T KOG4848|consen 100 EFNNAKKEYKELLKKMRESLRILYTKEPEKFTFR-EAEIAKNMKK-YPQTLAKYEASLVKQEQEADA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH-hHHHHHHHHHHHHHhHHHhhH
Confidence 3466778899999999999998887777766532 2334444432 223444555555554444433
No 193
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.46 E-value=38 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 316 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~ 316 (391)
+.+.|.++...+...+.++..-|+.|...+..|+.++.
T Consensus 33 knn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 33 KNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555556555556655443
No 194
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=72.31 E-value=5.7 Score=32.96 Aligned_cols=35 Identities=23% Similarity=0.610 Sum_probs=28.9
Q ss_pred EEEecCChhhHHHHHHHhcCcccCCCCc-ccceEEE
Q 016340 17 VLIKLVDQLTADEFYSNLNGKRFSPAEA-EVCHMLF 51 (391)
Q Consensus 17 vLlkF~~~~~A~~f~~~~ng~~f~s~e~-e~C~v~~ 51 (391)
+-+.|.+...|..|+..|+|++.+.... -+|.+.|
T Consensus 48 AFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~y 83 (97)
T PF04059_consen 48 AFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISY 83 (97)
T ss_pred EEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEeh
Confidence 5688999999999999999999886643 4787654
No 195
>PHA03096 p28-like protein; Provisional
Probab=72.13 E-value=1.4 Score=43.49 Aligned_cols=34 Identities=32% Similarity=0.697 Sum_probs=24.9
Q ss_pred CccccccCCcCC-----CCCCceeecCCCcccchhhhccc
Q 016340 75 PTCPICLERLDP-----DTSGILSTICDHSFQCSCTAKWT 109 (391)
Q Consensus 75 ~tCpiCle~ld~-----~~~g~it~~C~H~F~~~Cl~~w~ 109 (391)
-.|.||+|..-. -.-|+ ...|.|.||..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgi-l~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGI-LSEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhccccccccc-cccCCcHHHHHHHHHHH
Confidence 679999996521 12232 34699999999999995
No 196
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.08 E-value=2e+02 Score=33.44 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 016340 239 NRLLATQLETQRQY 252 (391)
Q Consensus 239 ~~ll~sqLesQR~y 252 (391)
+.+|...||.+|.+
T Consensus 372 ~ralkllLEnrrlt 385 (1195)
T KOG4643|consen 372 DRALKLLLENRRLT 385 (1195)
T ss_pred HHHHHHHHHhHHHH
Confidence 34555666665543
No 197
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=70.96 E-value=1.8 Score=32.70 Aligned_cols=34 Identities=29% Similarity=0.660 Sum_probs=26.9
Q ss_pred cccCCCccccccCCCCCcccccCcccceeeeccccccc
Q 016340 110 VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 147 (391)
Q Consensus 110 ~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vg 147 (391)
...||.|-.. .-.+|..|....+.+.|..||+.|
T Consensus 25 ~F~CPnCG~~----~I~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 25 KFLCPNCGEV----IIYRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred EeeCCCCCCe----eEeechhHHhcCCceECCCCCCcC
Confidence 3578888543 146799999999999999999986
No 198
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.89 E-value=1.3e+02 Score=31.95 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016340 242 LATQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~ 264 (391)
++.-|+.--.|.|.++.++.-+.
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ~k~ 354 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQMKI 354 (527)
T ss_pred HHHHhhhccHHHHHHHHHHHHHh
Confidence 44455555667777777766443
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.66 E-value=1.8e+02 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHhHhhhhHH
Q 016340 322 EITSLRLRDATILDLEEQIRDLTVYIEAQK 351 (391)
Q Consensus 322 ~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ 351 (391)
.++.++....++..|+..|..+-.-++.|+
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455667777777777666555544
No 200
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=70.60 E-value=47 Score=33.71 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAK 294 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~ 294 (391)
..++..+|+++..++
T Consensus 160 ~~~~~~qlE~~v~~K 174 (342)
T PF06632_consen 160 ANKLLKQLEKFVNAK 174 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544443
No 201
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.51 E-value=2.6 Score=37.04 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=14.9
Q ss_pred CCCCCCCCccccccC-CcCC
Q 016340 68 PAGFTELPTCPICLE-RLDP 86 (391)
Q Consensus 68 ~~~~~E~~tCpiCle-~ld~ 86 (391)
..++...++|.||+- .|.+
T Consensus 59 KaGv~ddatC~IC~KTKFAD 78 (169)
T KOG3799|consen 59 KAGVGDDATCGICHKTKFAD 78 (169)
T ss_pred ccccCcCcchhhhhhccccc
Confidence 367778999999996 4665
No 202
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=70.39 E-value=6.8 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=25.0
Q ss_pred ceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 14 RYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 14 ~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+..+++.|.+.++|+.-...+||..|.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999985
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.36 E-value=58 Score=31.21 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
+..+...++.+|..++.|...|.++-+.|......++.+..+|+..
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3445566666666666666666555555555555566666555543
No 204
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=70.25 E-value=73 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 311 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 311 ~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
.+..++++-.+.+...+..+++|.+.++.|-++--
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666777777777777766543
No 205
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.15 E-value=49 Score=34.30 Aligned_cols=70 Identities=13% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 274 KAVASKMQDIQNELDICEEAKKAVAD----VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 274 ~~~~~~~~~l~~~l~~~~~e~~~~~~----ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
..+..++.+++.....++.+.+.++. --.-+..-+.+-+-+.+.||+...+..+....||..|+.++.|+
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 206
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=1.8 Score=44.45 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc----------cccCCCccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----------VLSCQVCRF 118 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~----------~~~CP~Cr~ 118 (391)
-+..|.||.+..--. --+.-+||+|.||..|+...- ...||.+..
T Consensus 183 slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCc-ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 366799999876321 134678999999999997741 357887754
No 207
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=69.62 E-value=1.4 Score=39.46 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=39.9
Q ss_pred cccccCccc--ceeeecccccccccCC---CCcccccccCCCCCcc-----cccCCCceeEecCCch---hhhhhhcccc
Q 016340 127 TCSVCGTVE--NLWVCLICGFVGCGRY---KEGHAVRHWKDTQHWY-----SLDLRTQQIWDYVGDN---YVHRLNQSKA 193 (391)
Q Consensus 127 ~C~~C~~~~--~lwiCL~CG~vgCgr~---~~~HA~~H~~~t~H~~-----~~~l~t~~vwcy~cd~---~Vhrl~~~k~ 193 (391)
.|..||.++ .+-.|+.|+.-.|--. ...|...|...++|.- -.++++..+-||.|+. |+--.+..|.
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~NvF~LGFipak~ 81 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSRNVFLLGFIPAKS 81 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT----TTTEEEEEETT
T ss_pred CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCCceeeEEEEEecc
Confidence 367777543 3556777777776322 3578888887777763 2356678889999974 6667778888
Q ss_pred cCCeeccc
Q 016340 194 DGKLVEMN 201 (391)
Q Consensus 194 dgklve~~ 201 (391)
|+-+|=+-
T Consensus 82 d~vvvllC 89 (152)
T PF09416_consen 82 DSVVVLLC 89 (152)
T ss_dssp SCEEEEEE
T ss_pred CCeEEEEe
Confidence 87666554
No 208
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=69.39 E-value=42 Score=34.99 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 016340 281 QDIQNELDICEEA 293 (391)
Q Consensus 281 ~~l~~~l~~~~~e 293 (391)
++|+..|.+++++
T Consensus 62 ~kL~~~lk~~e~~ 74 (420)
T COG4942 62 AKLEKQLKSLETE 74 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 209
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.31 E-value=1.2e+02 Score=29.78 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRL 241 (391)
Q Consensus 229 ~K~e~~~~Ey~~l 241 (391)
.++..-..+|+.+
T Consensus 31 ~~i~~~ds~l~~~ 43 (265)
T COG3883 31 DKIQNQDSKLSEL 43 (265)
T ss_pred hHHHhhHHHHHHH
Confidence 3344444444444
No 210
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=69.13 E-value=7.7 Score=28.22 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.1
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++.++..-..+=.+.+.|.+.++|+.....+||..|+.
T Consensus 28 ~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 28 IKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 456664233456677999999999999999999987753
No 211
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=69.05 E-value=0.94 Score=52.29 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=38.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+...+.|++|++.+..- . ....|||.+|+.|...|. .+.||.|....
T Consensus 1149 ~~~~~~~c~ic~dil~~~-~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQ-G--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred HhhcccchHHHHHHHHhc-C--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 345788999999999742 2 234599999999999996 78999998654
No 212
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.91 E-value=2.2 Score=39.23 Aligned_cols=17 Identities=24% Similarity=0.769 Sum_probs=15.2
Q ss_pred eecCCCcccchhhhccc
Q 016340 93 STICDHSFQCSCTAKWT 109 (391)
Q Consensus 93 t~~C~H~F~~~Cl~~w~ 109 (391)
.+.||..||.-|+..|.
T Consensus 187 N~qCgkpFHqiCL~dWL 203 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWL 203 (234)
T ss_pred ccccCCcHHHHHHHHHH
Confidence 57899999999999994
No 213
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=1.1e+02 Score=34.53 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=7.8
Q ss_pred cCChhhHHHHHHH
Q 016340 21 LVDQLTADEFYSN 33 (391)
Q Consensus 21 F~~~~~A~~f~~~ 33 (391)
|-+...|+.|+..
T Consensus 31 fitg~qArnfflq 43 (1118)
T KOG1029|consen 31 FITGDQARNFFLQ 43 (1118)
T ss_pred ccchHhhhhhHHh
Confidence 5555666666655
No 214
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.60 E-value=1.8e+02 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 331 ATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
..+..|+|.+.+|--.+.-..++..
T Consensus 275 ~tv~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555543
No 215
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=68.53 E-value=5.8 Score=40.65 Aligned_cols=56 Identities=30% Similarity=0.460 Sum_probs=45.7
Q ss_pred CCcccccCcccceeeecccccccccCCCCcccccccCCCCCcccccCCC-ceeEecC
Q 016340 125 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRT-QQIWDYV 180 (391)
Q Consensus 125 ~~~C~~C~~~~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t-~~vwcy~ 180 (391)
...|.+--..-+...|+.||...=||....||..|.-+.||-..+.+.| ...+...
T Consensus 29 ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlp 85 (442)
T KOG2026|consen 29 EKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLP 85 (442)
T ss_pred CCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecc
Confidence 3456666666678889999999999999999999999999999999998 4444433
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.45 E-value=1.2e+02 Score=29.59 Aligned_cols=40 Identities=5% Similarity=-0.041 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHh
Q 016340 314 KFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 314 ~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki 353 (391)
+|..|...+..+.+..+.++.||.|-++-++-.|+.+..-
T Consensus 121 qIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~ 160 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQE 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666677788888877777777665443
No 217
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.67 E-value=57 Score=29.21 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016340 231 VEAIVDE 237 (391)
Q Consensus 231 ~e~~~~E 237 (391)
+..+..+
T Consensus 74 l~~ld~e 80 (169)
T PF07106_consen 74 LAELDAE 80 (169)
T ss_pred HHHHHHH
Confidence 3333333
No 218
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=67.43 E-value=80 Score=28.30 Aligned_cols=16 Identities=38% Similarity=0.360 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 301 NSKLIKNQEIMRKKFK 316 (391)
Q Consensus 301 n~~L~~nq~~~~~~~~ 316 (391)
|+.|.+.++.|+.+++
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.14 E-value=76 Score=31.13 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 016340 306 KNQEIMRKKFKEIE 319 (391)
Q Consensus 306 ~nq~~~~~~~~~le 319 (391)
.+.+.++.+|++++
T Consensus 80 ~eik~l~~eI~~~~ 93 (265)
T COG3883 80 AEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 220
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=67.04 E-value=1e+02 Score=28.21 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 250 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 329 (391)
Q Consensus 250 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~ 329 (391)
-.||..+++-+..+....+.+.++ .+...+.+.+.+.+.+..++. .+...|.+....+.....++.. .+...
T Consensus 90 ~syY~~L~~~id~~~~~~~~~~i~-~L~~~i~~~q~~~~~~i~~L~---~f~~~l~~D~~~l~~~~~~l~~----~l~~~ 161 (184)
T PF05791_consen 90 QSYYDTLVEAIDQKDKEDLKEIIE-DLQDQIQKNQDKVQALINELN---DFKDKLQKDSRNLKTDVDELQS----ILAGE 161 (184)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHH----HHhcc
Confidence 567877766663332222222222 222334444444444444443 3334566666666666554443 33444
Q ss_pred HHHHhhHHHHHHhHh
Q 016340 330 DATILDLEEQIRDLT 344 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlm 344 (391)
...|.+|+.+|.++-
T Consensus 162 ~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 162 NGDIPQLQKQIENLN 176 (184)
T ss_dssp T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHH
Confidence 467778887777654
No 221
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.00 E-value=1.5 Score=47.80 Aligned_cols=45 Identities=31% Similarity=0.646 Sum_probs=36.2
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhc---cc--cccCCCcccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT--VLSCQVCRFC 119 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~---w~--~~~CP~Cr~~ 119 (391)
....+.||||+..+..+ +++.|.|.|+..|+.. |. ...||+|+..
T Consensus 18 ~~k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred HhhhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 34578999999988665 6788999999999876 32 5789999854
No 222
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.85 E-value=1.4e+02 Score=32.20 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
..+.++..+++.++++...+.+.-..|++.....+.++..+
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333334444333333333333
No 223
>PLN02939 transferase, transferring glycosyl groups
Probab=66.78 E-value=1e+02 Score=35.66 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 016340 244 TQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 244 sqLesQR~yyE~~l~~~~~~~ 264 (391)
--||..|...++-|.+++.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 260 FKLEKERSLLDASLRELESKF 280 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777654
No 224
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.21 E-value=2.1e+02 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=7.9
Q ss_pred HHhhHHHHHHhHhHhh
Q 016340 332 TILDLEEQIRDLTVYI 347 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~l 347 (391)
.|.+|+.+|.+|.--|
T Consensus 772 ~I~~l~~~i~~L~~~l 787 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKEL 787 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544433
No 225
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.20 E-value=84 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 302 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 302 ~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
..|.+.++....+++.++... +...+++.+++.+++.+.-
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~----~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQE----KKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344444444445555554432 2233466677777776643
No 226
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.17 E-value=2.9e+02 Score=33.08 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=5.4
Q ss_pred ccCCCccccc
Q 016340 111 LSCQVCRFCH 120 (391)
Q Consensus 111 ~~CP~Cr~~~ 120 (391)
..||+|...+
T Consensus 678 ~~C~LC~R~f 687 (1311)
T TIGR00606 678 SCCPVCQRVF 687 (1311)
T ss_pred CcCCCCCCCC
Confidence 3566665544
No 227
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.67 E-value=75 Score=26.11 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 278 SKMQDIQNELDICEEAKKAVA-DVNSKLIK--NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~-~ln~~L~~--nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
.+..+++.+++.++.+++.+. ++.+.... +.+.+..+++.+.+ .++..+++..++++++.+++..|
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~----~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKE----EIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555556666655554432 11111111 22334444433333 23444567788888888888754
No 228
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.16 E-value=74 Score=32.03 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le 319 (391)
+.-|..+|+++..|++..+.|-+.|+.....++.++.++.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666666666666555555555445544444433
No 229
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.96 E-value=2.3e+02 Score=33.94 Aligned_cols=13 Identities=38% Similarity=0.309 Sum_probs=5.8
Q ss_pred HHhhHHHHHHhHh
Q 016340 332 TILDLEEQIRDLT 344 (391)
Q Consensus 332 ~i~dL~EQ~rDlm 344 (391)
+|.++++++.+|.
T Consensus 903 ~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 903 EIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHhhhhh
Confidence 4444444444443
No 230
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.94 E-value=1.1e+02 Score=27.76 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 241 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA 293 (391)
Q Consensus 241 ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e 293 (391)
+-.+++|.++.-|...++++..+....-.... ..+......|+.++++++.+
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~-~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEF-AELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34677788777788888877765432111011 12233444555555555544
No 231
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.81 E-value=2.4 Score=46.78 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCCccccccCCcCCCCCCceeec---CCCcccchhhhccc--------cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAKWT--------VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~---C~H~F~~~Cl~~w~--------~~~CP~Cr~~~ 120 (391)
+..+|++|.--+.+++.|.-..+ |+|.||..||..|. ...|+.|..++
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 45689999988866555544444 99999999999995 34678887665
No 232
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.46 E-value=1.6e+02 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=14.6
Q ss_pred HHHhhHHHHHHhHh-HhhhhHHHhhc
Q 016340 331 ATILDLEEQIRDLT-VYIEAQKTLTN 355 (391)
Q Consensus 331 ~~i~dL~EQ~rDlm-f~le~q~ki~~ 355 (391)
.++.||++.-.++| ++-+||+.++.
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666654 33456666654
No 233
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.20 E-value=1.1e+02 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~ 322 (391)
..+..|+.++..+..+++.....++.|.+....+.-.+..+|++.
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555444444443
No 234
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.16 E-value=2.3e+02 Score=31.20 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=6.1
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
++.+|++|+..|
T Consensus 161 QN~eLK~QL~El 172 (617)
T PF15070_consen 161 QNRELKEQLAEL 172 (617)
T ss_pred hHHHHHHHHHHH
Confidence 445555555444
No 235
>PRK00106 hypothetical protein; Provisional
Probab=63.64 E-value=2.2e+02 Score=30.79 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=7.4
Q ss_pred CCcCCcEEeecCCC
Q 016340 360 DGIKGGTVLPVSYQ 373 (391)
Q Consensus 360 ~ei~~g~i~~~~~~ 373 (391)
+-+.+-||.+++-|
T Consensus 219 ~~~~e~tvs~v~lp 232 (535)
T PRK00106 219 EYVTEQTITTVHLP 232 (535)
T ss_pred hhhhhheeeeEEcC
Confidence 44566666554433
No 236
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.55 E-value=1.6e+02 Score=29.32 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHhhHHHHHHhHhHhhh
Q 016340 329 RDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlmf~le 348 (391)
..+++.+|+++|+++-..++
T Consensus 249 ~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 249 LEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666665555
No 237
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.46 E-value=1.4e+02 Score=31.19 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 329 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~ 329 (391)
..+|.++.++..++.++++++---+.+.+..++.++.+.|++.+++-+.+
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 45677888888888888888888888888888888888888877766543
No 238
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.22 E-value=92 Score=34.14 Aligned_cols=13 Identities=8% Similarity=0.067 Sum_probs=7.2
Q ss_pred HHhhHHHHHHhHh
Q 016340 332 TILDLEEQIRDLT 344 (391)
Q Consensus 332 ~i~dL~EQ~rDlm 344 (391)
.+..+.+|+....
T Consensus 301 ll~~~~~q~~~e~ 313 (650)
T TIGR03185 301 LLDSTKAQLQKEE 313 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 4555566655544
No 239
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.15 E-value=74 Score=35.84 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHh
Q 016340 251 QYYESLLAEAKSK 263 (391)
Q Consensus 251 ~yyE~~l~~~~~~ 263 (391)
.-+|..|+++.++
T Consensus 511 ~~~~~li~~L~~~ 523 (771)
T TIGR01069 511 EEINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566665543
No 240
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.94 E-value=1.5e+02 Score=29.08 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHhH
Q 016340 304 LIKNQEIMRKKFKEIEEREITSLRLRD-------ATILDLEEQIRDL 343 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~~~~~~~~~-------~~i~dL~EQ~rDl 343 (391)
|+...+.+..++....+++..+.--+| -+|.+|..||..|
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444455555555555444433333 2566666665554
No 241
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.55 E-value=2.2e+02 Score=30.47 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 245 QLETQRQYYESLLAEAKS 262 (391)
Q Consensus 245 qLesQR~yyE~~l~~~~~ 262 (391)
+.+..+..|+..|.+...
T Consensus 208 ~~~~~~~~~~~~leeae~ 225 (522)
T PF05701_consen 208 EREQDAEEWEKELEEAEE 225 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555554443
No 242
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=62.44 E-value=13 Score=27.47 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.3
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++++++..-..+-.+++.|.+.+.|..+...++|..|.
T Consensus 28 v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 28 VRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 46677433345778999999999999999999988774
No 243
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.34 E-value=1.1e+02 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~ 322 (391)
++..+...+..+..|+..++.-+..|.+..+.++.+|.+|+...
T Consensus 60 el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 60 ELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444445555555555555555443
No 244
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=62.26 E-value=61 Score=31.53 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhHh
Q 016340 306 KNQEIMRKKFKEIEEREITSLRL-RDATILDLEEQIRDLT 344 (391)
Q Consensus 306 ~nq~~~~~~~~~le~~~~~~~~~-~~~~i~dL~EQ~rDlm 344 (391)
..+....++++.+++.++..+.. +.++-.....|+.|..
T Consensus 259 aeL~acEEkl~kmeE~Qa~~l~~aR~~errkvraqf~dfs 298 (311)
T PF04642_consen 259 AELNACEEKLKKMEEEQAEMLRAARTEERRKVRAQFHDFS 298 (311)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444566777777766655553 4566777888888864
No 245
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=62.24 E-value=3.5 Score=44.67 Aligned_cols=44 Identities=27% Similarity=0.790 Sum_probs=27.4
Q ss_pred CccccccCCcCCCCCCce--eecCCCcccchhhhccc-------cccCCCcccc
Q 016340 75 PTCPICLERLDPDTSGIL--STICDHSFQCSCTAKWT-------VLSCQVCRFC 119 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~i--t~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~ 119 (391)
..|++|--.=. ...|.+ --.|+-.+|..|+..|. +..||-||.+
T Consensus 19 ~mc~l~~s~G~-~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 19 LMCPLCGSSGK-GRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhccccc-cccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 45666653221 122322 23578899999999884 4569999874
No 246
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.92 E-value=53 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 308 QEIMRKKFKEIEEREI 323 (391)
Q Consensus 308 q~~~~~~~~~le~~~~ 323 (391)
-+-++.+..+||+++.
T Consensus 88 RDRFR~Rn~ELE~elr 103 (248)
T PF08172_consen 88 RDRFRQRNAELEEELR 103 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345566666666554
No 247
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.87 E-value=1.3e+02 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=9.3
Q ss_pred HHHHhhHHHHHHhHhHh
Q 016340 330 DATILDLEEQIRDLTVY 346 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~ 346 (391)
++..+||+.+-.++.+-
T Consensus 350 ddk~~eLEKkrd~al~d 366 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMD 366 (1265)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 45566666665554443
No 248
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.82 E-value=90 Score=25.68 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
++-..|..+.+.+..+..+++.-.+ .+...+++|..|++-+.-|-
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~-~Id~Ie~~V~~LE~~v~~LD 86 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQ-QIDQIEEQVTELEQTVYELD 86 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433221 22223334444444444333
No 249
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.79 E-value=76 Score=35.79 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q 016340 249 QRQYYESLLAEAKSK 263 (391)
Q Consensus 249 QR~yyE~~l~~~~~~ 263 (391)
+..-+|..|.+++++
T Consensus 514 ~~~~~~~li~~l~~~ 528 (782)
T PRK00409 514 DKEKLNELIASLEEL 528 (782)
T ss_pred hhhHHHHHHHHHHHH
Confidence 334456666666543
No 250
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=61.75 E-value=76 Score=26.29 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016340 248 TQRQYYESLLAEAKSKR 264 (391)
Q Consensus 248 sQR~yyE~~l~~~~~~~ 264 (391)
.||-++|-+|.++++..
T Consensus 4 ~~r~e~e~Ri~rLEend 20 (98)
T PF11166_consen 4 YQRHEHEWRIRRLEEND 20 (98)
T ss_pred hhhhhHHHHHHHHHHhh
Confidence 47778888998887654
No 251
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.46 E-value=2.6e+02 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 262 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~ 262 (391)
+++...+++....|..+++.=-.||+..++.-..
T Consensus 57 ~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~ 90 (611)
T KOG2398|consen 57 EAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKK 90 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888877888877665443
No 252
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.37 E-value=3.5 Score=41.52 Aligned_cols=44 Identities=23% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhcc----ccccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW----TVLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w----~~~~CP~Cr~~~ 120 (391)
|...|.||.+.+.-. -.+||+|..|-.|--.. ....||.||...
T Consensus 60 en~~C~ICA~~~TYs----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYS----ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEE----EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 567899999988654 57899999999997663 367999999754
No 253
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.37 E-value=92 Score=25.67 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=4.8
Q ss_pred HHhhHHHHHHh
Q 016340 332 TILDLEEQIRD 342 (391)
Q Consensus 332 ~i~dL~EQ~rD 342 (391)
++.+|+..|+.
T Consensus 92 ~~~elk~~l~~ 102 (105)
T cd00632 92 KLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 254
>PHA02862 5L protein; Provisional
Probab=61.30 E-value=4.1 Score=36.27 Aligned_cols=41 Identities=22% Similarity=0.589 Sum_probs=30.0
Q ss_pred CccccccCCcCCCCCCceeecCCC-----cccchhhhccc----cccCCCccccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDH-----SFQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H-----~F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
+.|-||.+--++. .-||.- --|..|+..|. ...||.|++.+
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5799999876553 356743 36999999995 45788888754
No 255
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.25 E-value=1.6e+02 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHh
Q 016340 312 RKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 312 ~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~ 346 (391)
..++++|+..+..+.+..+.++.++.+=..|+-+-
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34455555555555554444444444444444443
No 256
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.11 E-value=56 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=9.2
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
.+|..|+.+++.|.--|
T Consensus 32 ~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666655433
No 257
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.53 E-value=79 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.0
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
++.+|+++++..
T Consensus 397 ~~~~l~~~l~~~ 408 (451)
T PF03961_consen 397 ELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHhh
Confidence 333444444433
No 258
>PRK10698 phage shock protein PspA; Provisional
Probab=60.51 E-value=1.5e+02 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 282 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 282 ~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
....++..++.+.......-..|......++.++.++..+..
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666666666655443
No 259
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.48 E-value=1.6e+02 Score=31.42 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHhH
Q 016340 331 ATILDLEEQIRDL 343 (391)
Q Consensus 331 ~~i~dL~EQ~rDl 343 (391)
.++++|++++.+|
T Consensus 152 ~~~~~~~~~l~~l 164 (525)
T TIGR02231 152 RRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555555
No 260
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.03 E-value=3.4e+02 Score=31.77 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 016340 228 NSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~--sqLesQR~yyE~~l~~~~~~~ 264 (391)
+.-++.+..|-..|-. ..|+.||.-+|..|.+++.+.
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~ 698 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKL 698 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 466778888888888877543
No 261
>PRK11519 tyrosine kinase; Provisional
Probab=59.88 E-value=2.8e+02 Score=30.83 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016340 225 ALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE 265 (391)
Q Consensus 225 ~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~ 265 (391)
.+.+.=.+.+..+....-..+......|.+.+|.++..+.+
T Consensus 244 ~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~ 284 (719)
T PRK11519 244 DILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLD 284 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555556667788888888776543
No 262
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.59 E-value=84 Score=24.61 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 325 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~ 325 (391)
.+..|+.+++.++++...+.+-|..|...-..++..-....+++..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555444444444333333343333
No 263
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.56 E-value=1.9e+02 Score=30.28 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 016340 231 VEAIVDEYNRL 241 (391)
Q Consensus 231 ~e~~~~Ey~~l 241 (391)
++.++.+|..+
T Consensus 40 l~q~q~ei~~~ 50 (420)
T COG4942 40 LKQIQKEIAAL 50 (420)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 264
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.42 E-value=2.1e+02 Score=29.24 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
.|....+.|..-+..+++...+-.+..+..++.|++.|.+|
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445555555555555444444455566666655544
No 265
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=59.40 E-value=2.1e+02 Score=31.91 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=11.2
Q ss_pred HHHHHHhhHHHHHHhHhHhhh
Q 016340 328 LRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~le 348 (391)
.+.+.|..|++...-|---|.
T Consensus 492 K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSILR 512 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHhh
Confidence 344566666665555544443
No 266
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=59.31 E-value=1.5e+02 Score=29.05 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhh
Q 016340 298 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 298 ~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le 348 (391)
++|.++|....+.+.+......+. ........++..+++.-..||.+|.
T Consensus 130 qql~~sL~~r~~elk~~~~~~se~--rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 130 QQLLESLNKRHEELKNQVETFSES--RVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655544333322 1123333457777777777787773
No 267
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=59.07 E-value=3.3e+02 Score=32.39 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.8
Q ss_pred Cccccc
Q 016340 165 HWYSLD 170 (391)
Q Consensus 165 H~~~~~ 170 (391)
|||+..
T Consensus 338 HpFF~g 343 (1317)
T KOG0612|consen 338 HPFFEG 343 (1317)
T ss_pred CccccC
Confidence 555443
No 268
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.99 E-value=2e+02 Score=31.17 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 016340 250 RQYYESLLAEAKS 262 (391)
Q Consensus 250 R~yyE~~l~~~~~ 262 (391)
+.+||..|..+..
T Consensus 87 k~~ye~El~~ar~ 99 (546)
T KOG0977|consen 87 KAKYEAELATARK 99 (546)
T ss_pred hHHhhhhHHHHHH
Confidence 5677776666543
No 269
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.81 E-value=2.9e+02 Score=30.68 Aligned_cols=127 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH-------------HHHHHHHHHH
Q 016340 217 SEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVE-------------KAVASKMQDI 283 (391)
Q Consensus 217 ~~~~~~~~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~l 283 (391)
+.|+.....+.+.=.+.+..+-...-......-..|.+++|.++.++.+..-.+... .....++.++
T Consensus 163 ~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l 242 (754)
T TIGR01005 163 SEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAEL 242 (754)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHH
Q 016340 284 QNELDICEEAKKAVADVNSKLI-----------------------KNQEIMRKKFKEIEEREITSLRLRD---ATILDLE 337 (391)
Q Consensus 284 ~~~l~~~~~e~~~~~~ln~~L~-----------------------~nq~~~~~~~~~le~~~~~~~~~~~---~~i~dL~ 337 (391)
..++..++.++...+.....|. ..+..++.++.+++.+...+..... -++.+|+
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~ 322 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAK 322 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q ss_pred HHHHhH
Q 016340 338 EQIRDL 343 (391)
Q Consensus 338 EQ~rDl 343 (391)
.|+.+|
T Consensus 323 ~qi~~l 328 (754)
T TIGR01005 323 SSLADL 328 (754)
T ss_pred HHHHHH
No 270
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.79 E-value=1.6e+02 Score=27.73 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 277 ASKMQDIQNELDICEEA 293 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e 293 (391)
.....+|..++++++.-
T Consensus 89 E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 89 EKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 33444555555555544
No 271
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.78 E-value=95 Score=24.99 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
++-..|.+..+.+...++.++.... ...+++.+++++++.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~----~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLK----YLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444444544555554444443322 223345555555544
No 272
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.45 E-value=2e+02 Score=28.58 Aligned_cols=10 Identities=50% Similarity=0.707 Sum_probs=5.7
Q ss_pred HHHhhHHHHH
Q 016340 331 ATILDLEEQI 340 (391)
Q Consensus 331 ~~i~dL~EQ~ 340 (391)
..|.+|+|++
T Consensus 407 qkikeleek~ 416 (445)
T KOG2891|consen 407 QKIKELEEKI 416 (445)
T ss_pred HHHHHHHHHH
Confidence 3456666654
No 273
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.25 E-value=3.3e+02 Score=31.07 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.2
Q ss_pred HHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 332 TILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
+-.+|=.-||+||-.++.|.|+.+
T Consensus 460 Qcnemv~rir~l~~sle~qrKVeq 483 (1265)
T KOG0976|consen 460 QCNEMVDRIRALMDSLEKQRKVEQ 483 (1265)
T ss_pred HHHHHHHHHHHHhhChhhhcchHH
Confidence 445566678899999988888765
No 274
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=58.23 E-value=1.3e+02 Score=26.37 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q 016340 251 QYYESLLAE 259 (391)
Q Consensus 251 ~yyE~~l~~ 259 (391)
.||+.++.+
T Consensus 39 k~F~~LVk~ 47 (132)
T PF05597_consen 39 KVFEALVKE 47 (132)
T ss_pred HHHHHHHHH
Confidence 456666554
No 275
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.87 E-value=1e+02 Score=31.24 Aligned_cols=6 Identities=50% Similarity=0.656 Sum_probs=3.6
Q ss_pred CCcEEe
Q 016340 363 KGGTVL 368 (391)
Q Consensus 363 ~~g~i~ 368 (391)
++|.++
T Consensus 94 kNGlyL 99 (330)
T PF07851_consen 94 KNGLYL 99 (330)
T ss_pred CCCccc
Confidence 477664
No 276
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.86 E-value=1.3e+02 Score=31.15 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQ----NELDICEEAKKAV----- 297 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~e~~~~----- 297 (391)
.+.-+|.+.++- .-+.+-|-+|+.-|---+.-..+-.++.++ +++..-.+++.+|+ .+|+++.+|+..|
T Consensus 303 L~AQle~~R~q~-e~~q~~~~s~~d~~~~~~~~~qatCERgfA-aMEetHQkkiEdLQRqHqRELekLreEKdrLLAEET 380 (593)
T KOG4807|consen 303 LRAQLEAWRLQG-EAPQSALRSQEDGHIPPGYISQATCERGFA-AMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEET 380 (593)
T ss_pred HHHHHHHHHHhc-cCchhhHhhhhhccCCccHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHhHhHhhhhHHH
Q 016340 298 ---------------ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ-------IRDLTVYIEAQKT 352 (391)
Q Consensus 298 ---------------~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ-------~rDlmf~le~q~k 352 (391)
.+|.+.|.+-+ .+..-++.|.....+-+...+.+++=|-|| +.-||-.+++.+.
T Consensus 381 AATiSAIEAMKnAhrEEmeRELeKsq-SvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerq 456 (593)
T KOG4807|consen 381 AATISAIEAMKNAHREEMERELEKSQ-SVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQ 456 (593)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhh-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 277
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=57.82 E-value=2.4 Score=40.67 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=26.5
Q ss_pred CCCccccccC-Cc-CCCCCCceeecCCCcccchhhhcc
Q 016340 73 ELPTCPICLE-RL-DPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 73 E~~tCpiCle-~l-d~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
+...||||.. ++ .|.+.-++.+-|=|..|-+|+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI 46 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI 46 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH
Confidence 4568999985 54 565555555559999999998774
No 278
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=57.40 E-value=4e+02 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhHHHHHHhHhHhhhhH
Q 016340 324 TSLRLRDATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 324 ~~~~~~~~~i~dL~EQ~rDlmf~le~q 350 (391)
..+..+.+++..|+..|+.+.-+|..+
T Consensus 1724 ~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 344556678888888888887777543
No 279
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.34 E-value=1.5e+02 Score=26.79 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKK 295 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~ 295 (391)
...++|..+++.++.+.+
T Consensus 89 ~e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445554444443
No 280
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.30 E-value=5.2 Score=42.50 Aligned_cols=60 Identities=25% Similarity=0.656 Sum_probs=46.8
Q ss_pred CCcccccCccc-ceee-ecccccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhhh
Q 016340 125 RPTCSVCGTVE-NLWV-CLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 186 (391)
Q Consensus 125 ~~~C~~C~~~~-~lwi-CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~Vh 186 (391)
...|..|+... .+.+ |+.|+.++|- ...|...|....+|...+++.+...+||.|++||.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~ 104 (492)
T KOG1867|consen 43 TINCGTCGVLQIRLAVPCLICDSLGCL--SNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIY 104 (492)
T ss_pred cceeEEechhhhhhcccceechhcccc--cccccccccccccccccceeehhhheeccCCcEee
Confidence 34566666433 2333 8999999984 35577788888999999999999999999999996
No 281
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=57.17 E-value=1.1e+02 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016340 241 LLATQLETQRQYYESLLAEAKSKRES 266 (391)
Q Consensus 241 ll~sqLesQR~yyE~~l~~~~~~~~~ 266 (391)
.|..+++.||.-...+..+++++...
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~A 28 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSA 28 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888998888888888876643
No 282
>PHA00626 hypothetical protein
Probab=57.10 E-value=6.7 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=25.1
Q ss_pred cCCCccccccCCCCCcccccCcccceeeeccccccc
Q 016340 112 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 147 (391)
Q Consensus 112 ~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vg 147 (391)
.||.|... +-.+|..|..+.+.+.|..||+..
T Consensus 2 ~CP~CGS~----~Ivrcg~cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGSG----NIAKEKTMRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCc----eeeeeceecccCcceEcCCCCCee
Confidence 58988652 235788888889999999998874
No 283
>PRK03918 chromosome segregation protein; Provisional
Probab=57.05 E-value=3.3e+02 Score=30.67 Aligned_cols=14 Identities=0% Similarity=-0.090 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 016340 248 TQRQYYESLLAEAK 261 (391)
Q Consensus 248 sQR~yyE~~l~~~~ 261 (391)
..+..|+..+..+.
T Consensus 169 ~~~~~~~~~~~~l~ 182 (880)
T PRK03918 169 EVIKEIKRRIERLE 182 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 284
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.81 E-value=1e+02 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 282 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 282 ~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
.|..-..+++.++..|+.--..|.+|.+.+..++++.
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333344444555555554556677777777666653
No 285
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.80 E-value=1.2e+02 Score=25.49 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016340 241 LLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 241 ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
++.-.|+.+|..|+.+...+..+
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~ 33 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQR 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888777776554
No 286
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=56.72 E-value=3.2e+02 Score=30.52 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=6.6
Q ss_pred hHHHHHHhHhHhh
Q 016340 335 DLEEQIRDLTVYI 347 (391)
Q Consensus 335 dL~EQ~rDlmf~l 347 (391)
.|=.||-||-.-|
T Consensus 584 ~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 584 MLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHHH
Confidence 3334566665544
No 287
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.44 E-value=95 Score=24.26 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHhH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL---RDATILDLEEQIRDL 343 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~---~~~~i~dL~EQ~rDl 343 (391)
+.+|+.+|. .++..|-+...+.+..|+.-+..+.......... ..++|.+|..||..|
T Consensus 1 MteLE~qLl------~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 1 MTELEKQLL------SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred CcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.94 E-value=1.5e+02 Score=27.47 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=10.7
Q ss_pred hhhhhcccccCCeecccCCC
Q 016340 185 VHRLNQSKADGKLVEMNSPC 204 (391)
Q Consensus 185 Vhrl~~~k~dgklve~~~~~ 204 (391)
|--++|+-.|--||.....+
T Consensus 32 VKdvlq~LvDDglV~~EKiG 51 (188)
T PF03962_consen 32 VKDVLQSLVDDGLVHVEKIG 51 (188)
T ss_pred HHHHHHHHhccccchhhhcc
Confidence 33444555555566655554
No 289
>PRK02224 chromosome segregation protein; Provisional
Probab=55.92 E-value=3.5e+02 Score=30.59 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 016340 249 QRQYYESLLAEAK 261 (391)
Q Consensus 249 QR~yyE~~l~~~~ 261 (391)
-+..++..+..+.
T Consensus 181 ~~~~~~~~~~~~~ 193 (880)
T PRK02224 181 VLSDQRGSLDQLK 193 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 290
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=55.89 E-value=1e+02 Score=28.26 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=13.0
Q ss_pred HHHHHHhhHHHHHHhHhHhhh
Q 016340 328 LRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~le 348 (391)
...++++||+-|+-|...-|+
T Consensus 156 avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 156 AVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777665543
No 291
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.55 E-value=51 Score=34.90 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=8.4
Q ss_pred HHHHHHhhHHHHH
Q 016340 328 LRDATILDLEEQI 340 (391)
Q Consensus 328 ~~~~~i~dL~EQ~ 340 (391)
.++.+|+.|++|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3345677777777
No 292
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.48 E-value=2.3e+02 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHhhHHHHHHhHhHhhhhHHHh
Q 016340 332 TILDLEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le~q~ki 353 (391)
.+..|+.++.+|.--|..++.+
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444333
No 293
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=55.15 E-value=47 Score=31.28 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKN 307 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~n 307 (391)
...++.+|+.++.+++.+.+.++++|+...=|
T Consensus 180 ~~~~i~~L~kei~~L~~~~~kEkq~nrkveln 211 (221)
T PF14335_consen 180 RLEQIEKLEKEIAKLKKKIKKEKQFNRKVELN 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44677788888888888877777777666443
No 294
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=55.12 E-value=1.4e+02 Score=32.32 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSKRE-SLIPETVEKAVA------SKMQDIQNELDICEEAKKA----VADVNSKLIKNQEI 310 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~-~~~~~~~~~~~~------~~~~~l~~~l~~~~~e~~~----~~~ln~~L~~nq~~ 310 (391)
+...++..+.+|..++.++-.+.+ .++...++.-.. ..+.+..++++++++|.+. .+.+.+.|....+.
T Consensus 169 ~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~ 248 (555)
T TIGR03545 169 IEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ 248 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 567788888888888887742211 111112211111 1334455566666655444 44555556666666
Q ss_pred HHHHHHHHH
Q 016340 311 MRKKFKEIE 319 (391)
Q Consensus 311 ~~~~~~~le 319 (391)
++..+.+++
T Consensus 249 ~~~~~~~lk 257 (555)
T TIGR03545 249 LKADLAELK 257 (555)
T ss_pred HHHHHHHHH
Confidence 666555554
No 295
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.01 E-value=2.7e+02 Score=31.25 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=52.0
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 016340 221 GISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDI--CEEAKKAVA 298 (391)
Q Consensus 221 ~~~~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~e~~~~~ 298 (391)
+++.+-.++|+......-..-..+.++.|-.--|.+|..+..+.+..+ ..+.+||.+--. ++.|.+.++
T Consensus 1060 ~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni---------~EL~qlQNEKchlLvEhEtqklK 1130 (1187)
T KOG0579|consen 1060 NMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENI---------IELDQLQNEKCHLLVEHETQKLK 1130 (1187)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677776665554555566666777777777777766544322 234444443322 334666777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 299 DVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~ 315 (391)
++.+.-..+.+.|+.++
T Consensus 1131 elde~h~~~~~~w~e~l 1147 (1187)
T KOG0579|consen 1131 ELDEKHHEMRELWQENL 1147 (1187)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777787754
No 296
>PLN02678 seryl-tRNA synthetase
Probab=54.53 E-value=77 Score=33.40 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=15.3
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..++++.+|++++.++|.-|
T Consensus 87 i~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 87 ITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445567778888888877654
No 297
>PRK02224 chromosome segregation protein; Provisional
Probab=54.51 E-value=3.6e+02 Score=30.42 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAE 259 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~ 259 (391)
+.+.+++|-.-.+..|..
T Consensus 181 ~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555545555544
No 298
>PRK04406 hypothetical protein; Provisional
Probab=54.41 E-value=1.1e+02 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=8.5
Q ss_pred HHHhhHHHHHHhH
Q 016340 331 ATILDLEEQIRDL 343 (391)
Q Consensus 331 ~~i~dL~EQ~rDl 343 (391)
.+|..|+.|++.|
T Consensus 39 ~~I~~L~~ql~~L 51 (75)
T PRK04406 39 LLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4566677777666
No 299
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.24 E-value=4.1e+02 Score=31.00 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=16.7
Q ss_pred eEEEEecCChhhHHHHHHHhcCcccCCCCcccceEEEE
Q 016340 15 YSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFM 52 (391)
Q Consensus 15 y~vLlkF~~~~~A~~f~~~~ng~~f~s~e~e~C~v~~v 52 (391)
-.|+..|+.+..|-. -+||.==|.+-..+|-|+-|
T Consensus 17 rTvI~~fDp~FNAIT---GlNGSGKSNILDsICFvLGI 51 (1174)
T KOG0933|consen 17 RTVISGFDPQFNAIT---GLNGSGKSNILDSICFVLGI 51 (1174)
T ss_pred eeeccCCCcccchhh---cCCCCCchHHHHHHHHHHcc
Confidence 355666666554432 23443333344456744433
No 300
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=54.18 E-value=1.5e+02 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 243 ATQLETQRQYYESLLAE 259 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~~ 259 (391)
...++.=+.-++..+..
T Consensus 44 ~~~~~~~~~~l~~~~~~ 60 (202)
T PF01442_consen 44 ESELEELSDRLEERLDE 60 (202)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 301
>PRK04023 DNA polymerase II large subunit; Validated
Probab=54.18 E-value=11 Score=43.08 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCceeecCCCcccchhhhccccccCCCccccccCCCCCcccccCcccceeeeccccccc
Q 016340 89 SGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 147 (391)
Q Consensus 89 ~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vg 147 (391)
.|.+.+.=+..||..|-..-....||.|-... .....|..|+...+...|..||...
T Consensus 617 ~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~T--e~i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 617 KGTIEVEIGRRKCPSCGKETFYRRCPFCGTHT--EPVYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred CCceeecccCccCCCCCCcCCcccCCCCCCCC--CcceeCccccCcCCCCcCCCCCCCC
Confidence 35566666667777776554456788776542 2344677777766666677776654
No 302
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.82 E-value=70 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHhHhHhhhhHH
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLRL----RDATILDLEEQIRDLTVYIEAQK 351 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~~----~~~~i~dL~EQ~rDlmf~le~q~ 351 (391)
-|......+...+..++.++..+... -.+++..++.....+.=.+-.+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665544331 12355555555544444443333
No 303
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.70 E-value=2.3e+02 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 235 VDEYNRLLATQLETQRQYYESLLAEAKS 262 (391)
Q Consensus 235 ~~Ey~~ll~sqLesQR~yyE~~l~~~~~ 262 (391)
++|--.-|..|-|++|+-=-+..+.+.+
T Consensus 376 qLerQReiE~qrEEerkkeie~rEaar~ 403 (1118)
T KOG1029|consen 376 QLERQREIERQREEERKKEIERREAARE 403 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555443333443333
No 304
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=5.4 Score=39.95 Aligned_cols=42 Identities=21% Similarity=0.545 Sum_probs=30.2
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhcc--ccccCCCccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 118 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w--~~~~CP~Cr~ 118 (391)
.-.||||+-.-..|. +...-|-.||..|+-+. ....||+-.+
T Consensus 300 ~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred cccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCC
Confidence 347999998875541 33335899999999885 3678998543
No 305
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.54 E-value=4.4e+02 Score=31.13 Aligned_cols=9 Identities=44% Similarity=0.309 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016340 252 YYESLLAEA 260 (391)
Q Consensus 252 yyE~~l~~~ 260 (391)
-++..+..+
T Consensus 797 ~~~~~~~~~ 805 (1163)
T COG1196 797 ELEEELEEA 805 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 306
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=53.51 E-value=6.9 Score=38.28 Aligned_cols=62 Identities=34% Similarity=0.733 Sum_probs=38.2
Q ss_pred CCCccccccCCcC-CCCCC----ce-eecCCCcccchhhhccc---------cccCCCccccccCCCCCcccccCcccc-
Q 016340 73 ELPTCPICLERLD-PDTSG----IL-STICDHSFQCSCTAKWT---------VLSCQVCRFCHQQDERPTCSVCGTVEN- 136 (391)
Q Consensus 73 E~~tCpiCle~ld-~~~~g----~i-t~~C~H~F~~~Cl~~w~---------~~~CP~Cr~~~~~~~~~~C~~C~~~~~- 136 (391)
..|-|-+||---. .-.+| ++ -..||.+-|-+||+-.. -..|..|++ |+.||..+|
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~---------csicgtsend 293 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY---------CSICGTSEND 293 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce---------eccccCcCCC
Confidence 4678999985331 11111 12 24589999999996532 246777765 667777654
Q ss_pred --eeeeccc
Q 016340 137 --LWVCLIC 143 (391)
Q Consensus 137 --lwiCL~C 143 (391)
|.+|-.|
T Consensus 294 dqllfcddc 302 (336)
T KOG1244|consen 294 DQLLFCDDC 302 (336)
T ss_pred ceeEeeccc
Confidence 6666655
No 307
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.40 E-value=2.2e+02 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 272 VEKAVASKMQDIQNELDICEEA 293 (391)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~~~e 293 (391)
+++.+...++.++.++.+.+..
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~ 184 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQ 184 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 308
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=53.38 E-value=16 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCCceEEEEecCChhhHHHHHH
Q 016340 11 MEDRYSVLIKLVDQLTADEFYS 32 (391)
Q Consensus 11 ~~~~y~vLlkF~~~~~A~~f~~ 32 (391)
.+...+|||.|.|...|..||.
T Consensus 36 ~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 36 WDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp -SSSEEEEEEESSHHHHHHHHC
T ss_pred CCCCeEEEEECCCHHHHHHHHC
Confidence 4568899999999999999985
No 309
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.29 E-value=1.4e+02 Score=25.29 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=7.5
Q ss_pred HHhhHHHHHHhHhHhhhh
Q 016340 332 TILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le~ 349 (391)
.|.||+-+|-|+.-.|+.
T Consensus 59 r~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 59 RIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 310
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.15 E-value=83 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=15.3
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..++++.++++++.+++..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 82 IKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444567788888888887755
No 311
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.01 E-value=63 Score=24.10 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=11.5
Q ss_pred HHHhhHHHHHHhHhHhhh
Q 016340 331 ATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le 348 (391)
+.|++|++.|+|||---|
T Consensus 28 ~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 28 ESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777775443
No 312
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.39 E-value=44 Score=26.67 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 277 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
......|+.+|.+++.-...+..+ ....+.|...++.++++..
T Consensus 27 ~~~~~~lk~Klq~ar~~i~~lpgi----~~s~eeq~~~i~~Le~~i~ 69 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIRELPGI----DRSVEEQEEEIEELEEQIR 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc----cCCHHHHHHHHHHHHHHHH
Confidence 345566777777776665554443 3445667777777776653
No 313
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.33 E-value=2.4e+02 Score=27.67 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 309 EIMRKKFKEIEEREITSLRLRDATI 333 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~~~~~~~~~i 333 (391)
+.+++.|.+||.....+...+.+.|
T Consensus 108 eql~kyiReLEQaNDdLErakRati 132 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATI 132 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhh
Confidence 3445555555555555544444443
No 314
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.12 E-value=3.8e+02 Score=29.88 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhHhHhhhh
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKN-QEIM---RKKFKEIEEREITSLR--LRDATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~n-q~~~---~~~~~~le~~~~~~~~--~~~~~i~dL~EQ~rDlmf~le~ 349 (391)
+.+++..|++++..++.+...++.....+.+. ++.| ..++.+++.....+.+ ..+++...|--+|.||-=.|..
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceE
Confidence 33455666666666666555544333333322 2222 2223333322222221 2224455566666666555544
Q ss_pred HHHhh
Q 016340 350 QKTLT 354 (391)
Q Consensus 350 q~ki~ 354 (391)
.=.+.
T Consensus 319 ~CRvR 323 (670)
T KOG0239|consen 319 FCRVR 323 (670)
T ss_pred EEEec
Confidence 43333
No 315
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.04 E-value=3.3e+02 Score=29.72 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNR 240 (391)
Q Consensus 229 ~K~e~~~~Ey~~ 240 (391)
.+.+.+.-+|..
T Consensus 50 qq~eEleaeyd~ 61 (772)
T KOG0999|consen 50 QQLEELEAEYDL 61 (772)
T ss_pred HHHHHHHHHHHH
Confidence 334566666653
No 316
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=51.92 E-value=31 Score=24.38 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.6
Q ss_pred CceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 13 DRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 13 ~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
.+-.+.+.|.+..+|......++|..|+.
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 36689999999999999999999998763
No 317
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=51.73 E-value=92 Score=24.00 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=13.7
Q ss_pred HHHHhhHHHHHHhHhH
Q 016340 330 DATILDLEEQIRDLTV 345 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf 345 (391)
...|.||+.-|.|||-
T Consensus 47 ~~riDDLEKnIaDLm~ 62 (73)
T KOG4117|consen 47 SSRIDDLEKNIADLMT 62 (73)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3578999999999996
No 318
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.66 E-value=2.5e+02 Score=31.76 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
.+++.++..|..++.++..+++.|..+..
T Consensus 624 ~qL~E~E~~L~eLq~eL~~~keS~s~~E~ 652 (769)
T PF05911_consen 624 NQLKESEQKLEELQSELESAKESNSLAET 652 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444444444444333
No 319
>PF14282 FlxA: FlxA-like protein
Probab=51.61 E-value=26 Score=29.33 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=11.6
Q ss_pred HHHHHHHhhHHHHHHhHhH
Q 016340 327 RLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf 345 (391)
+....+|..|+-||.-|..
T Consensus 54 q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445567777777765544
No 320
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.55 E-value=3.1e+02 Score=28.74 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016340 281 QDIQNELDICEEAKKAVADVNSK 303 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~~~~ln~~ 303 (391)
..+++--+++++|++.+++++..
T Consensus 110 tq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 110 TQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445556677777777666654
No 321
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=51.50 E-value=24 Score=34.07 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 243 ATQLETQRQYYESLLAEA 260 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~~~ 260 (391)
.+=+++.|.|||-.|.+.
T Consensus 9 ~svi~~ErIY~e~~l~~~ 26 (249)
T PF10422_consen 9 KSVIESERIYYEYQLNRA 26 (249)
T ss_dssp HHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhccchh
Confidence 455789999999977543
No 322
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=51.48 E-value=6.3 Score=34.60 Aligned_cols=48 Identities=29% Similarity=0.655 Sum_probs=34.3
Q ss_pred CCCccccccCCcCCCCCCce--eecCCCcccchhhhc-cc----cccCCCccccccC
Q 016340 73 ELPTCPICLERLDPDTSGIL--STICDHSFQCSCTAK-WT----VLSCQVCRFCHQQ 122 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~i--t~~C~H~F~~~Cl~~-w~----~~~CP~Cr~~~~~ 122 (391)
.+-.|-||.|...+.. .+ .-=||-+.|-.|-.. |. ...||+|+.++..
T Consensus 79 ~lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3557999998753321 11 223899999999877 86 6799999998743
No 323
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.43 E-value=3.4e+02 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 236 DEYNRLLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 236 ~Ey~~ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
++=+..-+-+.+.==.|-|++|..++++
T Consensus 179 m~ET~qK~ekI~ell~yieerLreLEeE 206 (1200)
T KOG0964|consen 179 MEETKQKREKINELLKYIEERLRELEEE 206 (1200)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444445666666666543
No 324
>smart00360 RRM RNA recognition motif.
Probab=51.17 E-value=32 Score=23.99 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.8
Q ss_pred CceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 13 DRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 13 ~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++-.+++.|.+...|..+...+||..|+
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 4557899999999999999999998875
No 325
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.04 E-value=3.7e+02 Score=29.48 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.9
Q ss_pred HhhHHHHHHhH
Q 016340 333 ILDLEEQIRDL 343 (391)
Q Consensus 333 i~dL~EQ~rDl 343 (391)
+..|++.+.+.
T Consensus 504 ~~~le~~~~~~ 514 (650)
T TIGR03185 504 LQQLEEEITKS 514 (650)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 326
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=51.00 E-value=13 Score=40.87 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=36.3
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccccccCCCCCcccccCccc-ceee
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVE-NLWV 139 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~-~lwi 139 (391)
.||-|-.... =++.||..|-.......||.|.+.. ++....|..||..- ..|-
T Consensus 3 ~Cp~Cg~~n~----------~~akFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~~~~~~~ 56 (645)
T PRK14559 3 ICPQCQFENP----------NNNRFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAETGTIWW 56 (645)
T ss_pred cCCCCCCcCC----------CCCccccccCCCCCCCcCCCCCCCC-CcccccccccCCcccchhh
Confidence 5888876543 2457888886655556899998865 45566899999763 3453
No 327
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.95 E-value=2.4e+02 Score=28.38 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
.|.+..+.+..+.+.+.+...+..+..++++..|+|.+.++|-
T Consensus 356 elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 356 ELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444455566777888888877764
No 328
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=50.94 E-value=31 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 315 FKEIEEREITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 315 ~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
|.=|+++....++..-++|+-|+...+||-|-|
T Consensus 12 i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 12 ILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 333444666667777789999999999999955
No 329
>smart00362 RRM_2 RNA recognition motif.
Probab=50.90 E-value=29 Score=24.42 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=28.0
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++++++.+ .++-.+++.|.+...|+.....+||..|+
T Consensus 29 ~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 29 VKIPKDTG-KSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred EEEecCCC-CCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 34555322 23446889999999999999999998875
No 330
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.79 E-value=1e+02 Score=28.03 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 281 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRD 330 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~ 330 (391)
+.++.+..+++.+...++.-|+.|.+..+.+..++..+++....++..++
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777777777777777777777666655443
No 331
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.70 E-value=3.2e+02 Score=32.41 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 286 ELDICEEAKKAVADVNSKLIKN 307 (391)
Q Consensus 286 ~l~~~~~e~~~~~~ln~~L~~n 307 (391)
++..++..+..+...++.++..
T Consensus 589 ~l~~le~~k~~ls~~~~~~~~~ 610 (1317)
T KOG0612|consen 589 KLSLLEESKSKLSKENKKLRSE 610 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444433
No 332
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=50.69 E-value=7.3 Score=46.11 Aligned_cols=44 Identities=27% Similarity=0.739 Sum_probs=30.1
Q ss_pred CCccccccC-CcCCCCCCceeecCCCcccchhhhc-----cc-------cccCCCcccc
Q 016340 74 LPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAK-----WT-------VLSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle-~ld~~~~g~it~~C~H~F~~~Cl~~-----w~-------~~~CP~Cr~~ 119 (391)
+..|-||.. ++... ..+.+.|+|-||..|... |. -.+||.|...
T Consensus 3486 DDmCmICFTE~L~AA--P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAA--PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred CceEEEEehhhhCCC--cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 445777763 44221 237789999999999854 74 2589999853
No 333
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=50.51 E-value=98 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..+++..++++++.+++..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 85 LTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556778888888877755
No 334
>PLN02372 violaxanthin de-epoxidase
Probab=50.47 E-value=2.7e+02 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=10.2
Q ss_pred eecCCCcccchhhhcc
Q 016340 93 STICDHSFQCSCTAKW 108 (391)
Q Consensus 93 t~~C~H~F~~~Cl~~w 108 (391)
.+.|+..|-..-+..|
T Consensus 154 qirCg~~fen~~vd~f 169 (455)
T PLN02372 154 QIKCGDLFENKVVDEF 169 (455)
T ss_pred hhhhHhhhccHhHHHH
Confidence 4557777766666555
No 335
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=50.43 E-value=9.3 Score=28.88 Aligned_cols=10 Identities=40% Similarity=1.291 Sum_probs=7.4
Q ss_pred ceeeeccccc
Q 016340 136 NLWVCLICGF 145 (391)
Q Consensus 136 ~lwiCL~CG~ 145 (391)
.-|+||-|..
T Consensus 48 ~eWLCLnCQ~ 57 (61)
T PF05715_consen 48 KEWLCLNCQM 57 (61)
T ss_pred ceeeeecchh
Confidence 5889988753
No 336
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.31 E-value=3.4e+02 Score=28.90 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHhhHHHHHHhHhHhhhh
Q 016340 331 ATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le~ 349 (391)
.-+..|+|||.++---++.
T Consensus 140 ~ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 140 SLLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 4578899999988766653
No 337
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.12 E-value=1.7e+02 Score=25.42 Aligned_cols=14 Identities=0% Similarity=0.126 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 016340 248 TQRQYYESLLAEAK 261 (391)
Q Consensus 248 sQR~yyE~~l~~~~ 261 (391)
+.|++.-.+|+.+.
T Consensus 61 ~tKkhLsqRId~vd 74 (126)
T PF07889_consen 61 STKKHLSQRIDRVD 74 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 338
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=50.12 E-value=3.5e+02 Score=32.02 Aligned_cols=20 Identities=0% Similarity=-0.100 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016340 244 TQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 244 sqLesQR~yyE~~l~~~~~~ 263 (391)
..+..||.|...++++++..
T Consensus 204 ~L~~~q~dl~~~~~~~l~~~ 223 (1109)
T PRK10929 204 ELARLRSELAKKRSQQLDAY 223 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665555543
No 339
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=49.79 E-value=13 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=25.7
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
+...|++|-+.|.+....++=..|+-.+|+.|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45689999999954444445567999999999533
No 340
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.63 E-value=93 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
+++..+-.++..++.....+-+-|..|+-.-+.++.++.++
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444544444444444433
No 341
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=49.34 E-value=1.8e+02 Score=25.48 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVAD 299 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ 299 (391)
-...|+.+||++..|+-.|++
T Consensus 35 l~eaL~~ELDsL~~EkvhLee 55 (134)
T PF15233_consen 35 LWEALQRELDSLNGEKVHLEE 55 (134)
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 445677788888777655544
No 342
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.21 E-value=2.6e+02 Score=29.86 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=8.3
Q ss_pred HHHhhHHHHHHhHhH
Q 016340 331 ATILDLEEQIRDLTV 345 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf 345 (391)
+.+..|+..++|+--
T Consensus 407 ~~~~slek~~~~~~s 421 (622)
T COG5185 407 GIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666665543
No 343
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.17 E-value=3.2e+02 Score=32.01 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016340 243 ATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~~~~~~ 263 (391)
+.+...-|.-|+..++.+.-+
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~ 796 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQ 796 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 444445566667666666544
No 344
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.17 E-value=1e+02 Score=24.93 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhHhHhhhhHHHhhccCCCCCcCC
Q 016340 286 ELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL-RDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKG 364 (391)
Q Consensus 286 ~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~-~~~~i~dL~EQ~rDlmf~le~q~ki~~~~~~~ei~~ 364 (391)
+++++..|+.+.+ +....|+++++.|+.+..++... .-.-|..+.=...+|+.||.+-.. +
T Consensus 2 KleKi~~eieK~k-------~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~-----------~ 63 (83)
T PF14193_consen 2 KLEKIRAEIEKTK-------EKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS-----------S 63 (83)
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----------c
Q ss_pred cEEeecCCCC
Q 016340 365 GTVLPVSYQQ 374 (391)
Q Consensus 365 g~i~~~~~~~ 374 (391)
|..+|.+.+.
T Consensus 64 ~~~~p~~~~~ 73 (83)
T PF14193_consen 64 GQAVPKADDE 73 (83)
T ss_pred cccCCCCccc
No 345
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.06 E-value=6.2 Score=44.25 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhcc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
...+|-+|--.+-. ......+|||.||..|+.+.
T Consensus 816 p~d~C~~C~~~ll~--~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI--KPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhc--CcceeeeccchHHHHHHHHH
Confidence 36689999987632 12578899999999999764
No 346
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=48.83 E-value=13 Score=37.29 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=33.2
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
+.||+|-+.++....-.+..+|++..|..|+.... +..||.||..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~ 296 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCc
Confidence 78999999886655545566677777777776642 6899999953
No 347
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.64 E-value=1.9e+02 Score=32.46 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=9.0
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 016340 225 ALFNSKVEAIVDEYNRLLA 243 (391)
Q Consensus 225 ~~~~~K~e~~~~Ey~~ll~ 243 (391)
...++|+|.+..|+++-|+
T Consensus 458 ~~L~e~IeKLk~E~d~e~S 476 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEYT 476 (762)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344555554444444443
No 348
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=48.55 E-value=4.6e+02 Score=30.11 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016340 244 TQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 244 sqLesQR~yyE~~l~~~~~~ 263 (391)
.||++++++-|++++..+..
T Consensus 567 d~leaa~e~lE~r~~~~e~~ 586 (984)
T COG4717 567 DQLEAAYEALEGRFAAAEAA 586 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 58899999999998887754
No 349
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=48.54 E-value=2e+02 Score=25.71 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHHhHhHhhh
Q 016340 330 DATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le 348 (391)
.+++.||+|.|.+-.=+|.
T Consensus 95 ~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 95 TDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567777777776665554
No 350
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.54 E-value=1.6e+02 Score=31.17 Aligned_cols=42 Identities=7% Similarity=0.208 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
.++..|......+....++++.+.. .....+.+|+.|+.++.
T Consensus 102 ~i~~av~~~~~~~~~~~~ql~~~~~----~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 102 QIQQAVQSETQELTKEIEQLKSERQ----QLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 3445554444444444444443332 23346777888887654
No 351
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=48.50 E-value=8.4 Score=32.79 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=7.9
Q ss_pred CCCccccccCCcC
Q 016340 73 ELPTCPICLERLD 85 (391)
Q Consensus 73 E~~tCpiCle~ld 85 (391)
...+|.+|...|.
T Consensus 53 ~~~~C~~C~~~fg 65 (118)
T PF02318_consen 53 GERHCARCGKPFG 65 (118)
T ss_dssp CCSB-TTTS-BCS
T ss_pred CCcchhhhCCccc
Confidence 4568999988764
No 352
>PRK11281 hypothetical protein; Provisional
Probab=47.92 E-value=4.8e+02 Score=30.95 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=9.4
Q ss_pred HHhhHHHHHHhHh
Q 016340 332 TILDLEEQIRDLT 344 (391)
Q Consensus 332 ~i~dL~EQ~rDlm 344 (391)
-+++|..++.|+-
T Consensus 354 ~~~~l~~~iAdlr 366 (1113)
T PRK11281 354 LIEGLADRIADLR 366 (1113)
T ss_pred ccchHHHHHHHHH
Confidence 3567777888876
No 353
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.69 E-value=1.5e+02 Score=30.98 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHHhHhHhhhhH
Q 016340 327 RLRDATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~le~q 350 (391)
....+++++|++++..|.-.|+..
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788888888777666543
No 354
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.24 E-value=1.9e+02 Score=25.13 Aligned_cols=35 Identities=9% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 284 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 284 ~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
.++|+.+-..++...++++...++....+..+..+
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444433333333444444444444444444333
No 355
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=46.87 E-value=14 Score=25.82 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=18.2
Q ss_pred cccccCCcCCCCCCce--eecCCCcccchhhhc-cc---cccCCCc
Q 016340 77 CPICLERLDPDTSGIL--STICDHSFQCSCTAK-WT---VLSCQVC 116 (391)
Q Consensus 77 CpiCle~ld~~~~g~i--t~~C~H~F~~~Cl~~-w~---~~~CP~C 116 (391)
|.+|-+.... |+. +..|+-.+|..|+.. |. ...||.|
T Consensus 1 C~~C~~iv~~---G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---GQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---SEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHee---eccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5677776544 223 235888999999998 43 2369887
No 356
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=46.86 E-value=2.8e+02 Score=26.92 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 262 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~ 262 (391)
..-++.+..+| +.+|+.|-+||+.+..++.+
T Consensus 73 ~~~LeeliNkW----s~el~~Qe~vF~~q~~qvNa 103 (254)
T KOG2196|consen 73 YKTLEELINKW----SLELEEQERVFLQQATQVNA 103 (254)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Confidence 34466666665 57889999999999888764
No 357
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.66 E-value=6.4e+02 Score=30.94 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 016340 231 VEAIVDEYNRLLATQLETQ--RQYYESLLAEAK 261 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQ--R~yyE~~l~~~~ 261 (391)
+.....+|..-|..--.+| |.+|...|....
T Consensus 235 m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~ 267 (1486)
T PRK04863 235 MEAALRENRMTLEAIRVTQSDRDLFKHLITEST 267 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhh
Confidence 3344556666666666666 788888877654
No 358
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.61 E-value=3.4e+02 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHhHhHhhhhHHHh
Q 016340 330 DATILDLEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~q~ki 353 (391)
..+|++|..|+-+++.++++-..+
T Consensus 453 ~~~i~~l~~eLse~pinm~~v~~~ 476 (570)
T COG4477 453 GHEIQDLMKELSEVPINMEAVSAL 476 (570)
T ss_pred hhHHHHHHHHHhhcCCcHHHHHHH
Confidence 367888888888888888775544
No 359
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.57 E-value=1.4e+02 Score=23.19 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~ 315 (391)
.....|+.+++.+......-...|+.|...-+....++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555556666655444443333
No 360
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.51 E-value=1.6e+02 Score=23.92 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=3.8
Q ss_pred hHHHHHHhH
Q 016340 335 DLEEQIRDL 343 (391)
Q Consensus 335 dL~EQ~rDl 343 (391)
..-|.||++
T Consensus 78 ~a~e~Ir~v 86 (89)
T PF13747_consen 78 SAIETIRAV 86 (89)
T ss_pred HHHHHHHHH
Confidence 333444443
No 361
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.20 E-value=3.2e+02 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016340 225 ALFNSKVEAIVDEYNRLLATQLETQR 250 (391)
Q Consensus 225 ~~~~~K~e~~~~Ey~~ll~sqLesQR 250 (391)
.-...++.++..+|. .|..+|+.=|
T Consensus 23 ~~l~~~~~sL~qen~-~Lk~El~~ek 47 (310)
T PF09755_consen 23 EQLRKRIESLQQENR-VLKRELETEK 47 (310)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 344567777777744 3455665433
No 362
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=2e+02 Score=24.88 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHhH
Q 016340 331 ATILDLEEQIRDL 343 (391)
Q Consensus 331 ~~i~dL~EQ~rDl 343 (391)
+++.+|++.|++.
T Consensus 98 e~l~eLq~~i~~~ 110 (119)
T COG1382 98 ERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 363
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.89 E-value=2.3e+02 Score=25.59 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHhHhH
Q 016340 331 ATILDLEEQIRDLTV 345 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf 345 (391)
.++..|+|+-.+||.
T Consensus 117 ~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 117 DQSSRLEEREAELKK 131 (158)
T ss_pred hhccccchhHHHHHH
Confidence 344455555555543
No 364
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.77 E-value=4e+02 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 323 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~ 323 (391)
..+..++.+++++..++.+.++--+.|.++.+.+++.+..|+++..
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666677777777777666665544
No 365
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=45.70 E-value=2.3e+02 Score=25.52 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=5.2
Q ss_pred hhHHHHHHhHhH
Q 016340 334 LDLEEQIRDLTV 345 (391)
Q Consensus 334 ~dL~EQ~rDlmf 345 (391)
..|=..+.+|+-
T Consensus 129 ~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 129 AQLVTRLMELVS 140 (159)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 366
>PLN02320 seryl-tRNA synthetase
Probab=44.98 E-value=1.1e+02 Score=32.72 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..++++.++++++.+++..|
T Consensus 146 i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 146 LVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566777888888887765
No 367
>PLN03188 kinesin-12 family protein; Provisional
Probab=44.90 E-value=6.2e+02 Score=30.36 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 292 EAKKAVADVNSKLIKN 307 (391)
Q Consensus 292 ~e~~~~~~ln~~L~~n 307 (391)
+|+.++++-|++|+..
T Consensus 1173 ker~~~~~enk~l~~q 1188 (1320)
T PLN03188 1173 KERRYLRDENKSLQAQ 1188 (1320)
T ss_pred HHHHHHHHhhHHHHHH
Confidence 4566777888888653
No 368
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.80 E-value=8 Score=38.23 Aligned_cols=41 Identities=22% Similarity=0.555 Sum_probs=27.8
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcc-cchhhhccccccCCCcccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSF-QCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F-~~~Cl~~w~~~~CP~Cr~~ 119 (391)
+.-.|.||.|.-.+ .+-++|||.- |..|-... ..||+||..
T Consensus 299 ~~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm--~eCPICRqy 340 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD----CVFLECGHMVTCTKCGKRM--NECPICRQY 340 (350)
T ss_pred HHHHHHHHhcCCcc----eEEeecCcEEeehhhcccc--ccCchHHHH
Confidence 36679999876433 2778999975 44454333 389999863
No 369
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.75 E-value=1.8e+02 Score=24.22 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=4.7
Q ss_pred cCCcEEe
Q 016340 362 IKGGTVL 368 (391)
Q Consensus 362 i~~g~i~ 368 (391)
++.|.|+
T Consensus 78 vk~gEiv 84 (105)
T PRK00888 78 VKPGETF 84 (105)
T ss_pred CCCCCEE
Confidence 6677775
No 370
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=44.61 E-value=59 Score=27.19 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=4.0
Q ss_pred HHhhHHHHH
Q 016340 332 TILDLEEQI 340 (391)
Q Consensus 332 ~i~dL~EQ~ 340 (391)
+|++|+++|
T Consensus 91 ~i~~le~~I 99 (100)
T PF04568_consen 91 EIDELEKHI 99 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 444444443
No 371
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=44.47 E-value=2.9e+02 Score=26.41 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.2
Q ss_pred HHHHHhHhHhhhhHHHhhc
Q 016340 337 EEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 337 ~EQ~rDlmf~le~q~ki~~ 355 (391)
-+|+++|--|++||-...+
T Consensus 198 ~~~~~~L~~lv~AQl~Yh~ 216 (229)
T cd07594 198 ANHLRCLRDFVEAQMTYYA 216 (229)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5789999999999876544
No 372
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.43 E-value=3.6e+02 Score=32.13 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=3.8
Q ss_pred cccccccc
Q 016340 142 ICGFVGCG 149 (391)
Q Consensus 142 ~CG~vgCg 149 (391)
.||..+|+
T Consensus 1397 ~cGg~sC~ 1404 (1758)
T KOG0994|consen 1397 TCGGLSCR 1404 (1758)
T ss_pred CccCcccc
Confidence 34455553
No 373
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.35 E-value=1.9e+02 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
.|.++.+.+...++.++... +....++.+++.+++.+.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~----~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQE----ERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 33444444444444444332 223346667777776653
No 374
>PRK02119 hypothetical protein; Provisional
Probab=44.27 E-value=1.5e+02 Score=23.11 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.3
Q ss_pred HHHhhHHHHHHhH
Q 016340 331 ATILDLEEQIRDL 343 (391)
Q Consensus 331 ~~i~dL~EQ~rDl 343 (391)
.+|..|+.|++-|
T Consensus 37 ~~id~L~~ql~~L 49 (73)
T PRK02119 37 FVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 3555566665555
No 375
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.06 E-value=3.6e+02 Score=31.51 Aligned_cols=85 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHhHhHh
Q 016340 270 ETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRD---ATILDLEEQIRDLTVY 346 (391)
Q Consensus 270 ~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~---~~i~dL~EQ~rDlmf~ 346 (391)
+...+....+++++..+++.+++++..+.+..-....--..+..+...++.++........ +++.+++.+|+---+-
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~i 519 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEI 519 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhh
Q 016340 347 IEAQKTLT 354 (391)
Q Consensus 347 le~q~ki~ 354 (391)
++.+.+..
T Consensus 520 i~~~~~se 527 (1041)
T KOG0243|consen 520 ISQQEKSE 527 (1041)
T ss_pred HHHHHHHH
No 376
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.01 E-value=18 Score=37.23 Aligned_cols=82 Identities=21% Similarity=0.481 Sum_probs=0.0
Q ss_pred CccccccCCcC----CCCCCceeecCCCcccchhhhccc----------------------------cccCCCccccccC
Q 016340 75 PTCPICLERLD----PDTSGILSTICDHSFQCSCTAKWT----------------------------VLSCQVCRFCHQQ 122 (391)
Q Consensus 75 ~tCpiCle~ld----~~~~g~it~~C~H~F~~~Cl~~w~----------------------------~~~CP~Cr~~~~~ 122 (391)
|.||.|...+. +......-..|+-.||..|-..|. +..||.|+....-
T Consensus 239 ~~C~~l~~~~el~~~~~~~~~~C~~C~~~fCv~C~~~wh~~~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~ 318 (384)
T KOG1812|consen 239 PRCSSLMSKTELSSEVKSKRRPCVKCHELFCVKCKVPWHANLSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIEL 318 (384)
T ss_pred CCchHhhhhhhhccchhhcccccccCCCceeecCCCcCCCCCCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeee
Q ss_pred CCCCcccccCcccceeeecccccccccCCC---CcccccccCCCCCc
Q 016340 123 DERPTCSVCGTVENLWVCLICGFVGCGRYK---EGHAVRHWKDTQHW 166 (391)
Q Consensus 123 ~~~~~C~~C~~~~~lwiCL~CG~vgCgr~~---~~HA~~H~~~t~H~ 166 (391)
..+ | +...|- ||+..|-.+. ..|....+....|.
T Consensus 319 ~~G--C-------nhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~~r~~ 355 (384)
T KOG1812|consen 319 SEG--C-------NHMTCR-CGHQFCYMCGGDWKTHNGECYECCRYK 355 (384)
T ss_pred cCC--c-------ceEEee-ccccchhhcCcchhhCCccccCccccc
No 377
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=43.97 E-value=1.5e+02 Score=29.85 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 328 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~ 328 (391)
+..|=.+|.++.+|+.. +-+.|...++.+..+|.+|+++..-++++
T Consensus 10 i~~li~~la~~~~~~e~---~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ 55 (328)
T PF15369_consen 10 IANLIKELARVSEEKEV---TEERLKAEQESFEKKIRQLEEQNELIIKE 55 (328)
T ss_pred HHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444445555555432 22355666666667777776665555443
No 378
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.67 E-value=2.9e+02 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYE 254 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE 254 (391)
++|++.+.......-...-+..+.|=|
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444444444444444444443
No 379
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.29 E-value=19 Score=28.30 Aligned_cols=43 Identities=30% Similarity=0.597 Sum_probs=30.3
Q ss_pred CCccccccCCcCCCCCCceeecC--CCcccchhhhccccccCCCccc
Q 016340 74 LPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C--~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
.|.|--|-..+.+. ++ -...| .++||..|.....+..||.|--
T Consensus 5 RPnCECCDrDLpp~-s~-dA~ICtfEcTFCadCae~~l~g~CPnCGG 49 (84)
T COG3813 5 RPNCECCDRDLPPD-ST-DARICTFECTFCADCAENRLHGLCPNCGG 49 (84)
T ss_pred cCCCcccCCCCCCC-CC-ceeEEEEeeehhHhHHHHhhcCcCCCCCc
Confidence 47787776666543 22 22335 5899999998877889999964
No 380
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=43.10 E-value=4e+02 Score=28.72 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~ 315 (391)
|.+-|..|++-+..+|.++..+.+..+.+.+++ .+...+..++.+++.+-.++ .++|....--...+..+|
T Consensus 370 Ls~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI---~~vs~Kc~~~Ksd~d~kI 446 (531)
T PF15450_consen 370 LSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQI---EEVSDKCDLHKSDSDTKI 446 (531)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 316 KEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 316 ~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
..-.+.....+....++++-|-.++.
T Consensus 447 dtE~k~R~~eV~~vRqELa~lLssvQ 472 (531)
T PF15450_consen 447 DTEGKAREREVGAVRQELATLLSSVQ 472 (531)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
No 381
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.78 E-value=1.5e+02 Score=22.54 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.7
Q ss_pred HHhhHHHHH
Q 016340 332 TILDLEEQI 340 (391)
Q Consensus 332 ~i~dL~EQ~ 340 (391)
+|..|++++
T Consensus 47 ei~~L~~e~ 55 (61)
T PF08826_consen 47 EIERLKKEM 55 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 382
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.73 E-value=1.6e+02 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 290 CEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 290 ~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
+.-|...+++-|..|.......+...+.|+.+...+.. +-..-+|-+|.|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~----e~~~WQerlrsLL 73 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE----EQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33444455556666666555555555555554433322 2234455566554
No 383
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=42.59 E-value=2.8e+02 Score=25.64 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 304 LIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~ 322 (391)
|...|..-..||+.||+++
T Consensus 132 Lt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 132 LTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666554
No 384
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.58 E-value=15 Score=34.68 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=24.7
Q ss_pred cccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCcccc
Q 016340 77 CPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 77 CpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~ 119 (391)
|-.|-++=.. ++.+||.|- +|..|-.. -..||+|+..
T Consensus 161 Cr~C~~~~~~----VlllPCrHl~lC~~C~~~--~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREAT----VLLLPCRHLCLCGICDES--LRICPICRSP 198 (207)
T ss_pred ceecCcCCce----EEeecccceEeccccccc--CccCCCCcCh
Confidence 8888776443 488999975 56666433 3458888753
No 385
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.56 E-value=1.6e+02 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 313 KKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 313 ~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
.++.++.+......+..+.+|+.|+..|.
T Consensus 28 ~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 28 DEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555444
No 386
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=42.37 E-value=2.4e+02 Score=27.34 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK 313 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~ 313 (391)
....++.++...+..|.+|-+.|..-|..|+.--+.+-.
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~ 125 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLA 125 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888877777776666666666554443433
No 387
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=42.16 E-value=4.3e+02 Score=27.71 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=5.8
Q ss_pred HHhHhHhhhhHHHhh
Q 016340 340 IRDLTVYIEAQKTLT 354 (391)
Q Consensus 340 ~rDlmf~le~q~ki~ 354 (391)
+++.|-...-++.|.
T Consensus 116 l~~~~~~~r~~e~la 130 (459)
T KOG0288|consen 116 LREMRRKMRIAERLA 130 (459)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334443333334443
No 388
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.07 E-value=2.9e+02 Score=25.70 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQ 245 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sq 245 (391)
+.+++.+..|...|=.-|
T Consensus 25 q~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 25 QRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666655554444
No 389
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.06 E-value=2e+02 Score=25.42 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 016340 280 MQDIQNELDICE 291 (391)
Q Consensus 280 ~~~l~~~l~~~~ 291 (391)
+..|+.++++.+
T Consensus 43 l~lLq~e~~~~e 54 (160)
T PF13094_consen 43 LELLQEEIEKEE 54 (160)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 390
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=41.98 E-value=3e+02 Score=25.87 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 231 VEAIVDEYNRLLATQLETQ 249 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQ 249 (391)
+-..|..+..-|.+++..+
T Consensus 72 ~a~~H~~~a~~L~~~v~~~ 90 (236)
T cd07651 72 MAKSHLKFAKQIRQDLEEK 90 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566665555555443
No 391
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.95 E-value=3.3e+02 Score=26.23 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHhH
Q 016340 308 QEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 308 q~~~~~~~~~le~~~~---~~~~~~~~~i~dL~EQ~rDl 343 (391)
+..+..++.+++.... .....++.+...|++++...
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443332 22334555666666665443
No 392
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.72 E-value=1.3e+02 Score=30.57 Aligned_cols=7 Identities=43% Similarity=1.146 Sum_probs=3.1
Q ss_pred CCcEEee
Q 016340 363 KGGTVLP 369 (391)
Q Consensus 363 ~~g~i~~ 369 (391)
.||-+||
T Consensus 114 ~gG~lIP 120 (378)
T TIGR01554 114 DGGVTIP 120 (378)
T ss_pred CCCeeCC
Confidence 4444443
No 393
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=41.61 E-value=93 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=5.2
Q ss_pred HHhhHHHHHHh
Q 016340 332 TILDLEEQIRD 342 (391)
Q Consensus 332 ~i~dL~EQ~rD 342 (391)
++..|++++..
T Consensus 54 ~~~~l~~~l~~ 64 (66)
T PF10458_consen 54 ELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44445555443
No 394
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.55 E-value=4.4e+02 Score=27.67 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 297 VADVNSKLIKNQEIMRKK 314 (391)
Q Consensus 297 ~~~ln~~L~~nq~~~~~~ 314 (391)
+..|--.|..|+..++.+
T Consensus 221 l~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 221 LKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444566666655443
No 395
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.54 E-value=1.8e+02 Score=30.15 Aligned_cols=58 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 287 LDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 287 l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
++.+.+|++..++--..|.+..+.++..++.-=.-..+.+.+-.=.-+.|+||+.||.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt 319 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT 319 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 396
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=41.45 E-value=3e+02 Score=25.66 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 263 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~ 263 (391)
+.+|.....-...|.++.+.=..|++.-+.++...
T Consensus 25 ~t~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~q 59 (208)
T PF14644_consen 25 ETFEQCADNLVQKLQSYQEQADEYHNSCLQELRNQ 59 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555566777777666654
No 397
>PLN02939 transferase, transferring glycosyl groups
Probab=41.43 E-value=6.4e+02 Score=29.46 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 309 EIMRKKFKEIEEREI 323 (391)
Q Consensus 309 ~~~~~~~~~le~~~~ 323 (391)
+.++.+++-++++++
T Consensus 354 ~~~~~~~~~~~~~~~ 368 (977)
T PLN02939 354 ELLQQKLKLLEERLQ 368 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555554443
No 398
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.25 E-value=12 Score=24.86 Aligned_cols=13 Identities=46% Similarity=1.541 Sum_probs=10.6
Q ss_pred eeeeccccccccc
Q 016340 137 LWVCLICGFVGCG 149 (391)
Q Consensus 137 lwiCL~CG~vgCg 149 (391)
.|+|.+||++.=|
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 6999999999543
No 399
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=41.12 E-value=1.8e+02 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=7.2
Q ss_pred HHhHhHhhhhHHHhhccCCCCCcCCcEEeecCCC
Q 016340 340 IRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQ 373 (391)
Q Consensus 340 ~rDlmf~le~q~ki~~~~~~~ei~~g~i~~~~~~ 373 (391)
|+|.|=--+-..+|.++-..+ .+++|++.|..
T Consensus 50 isdkIdkCeC~Kelle~Lk~q--~d~~iip~~~~ 81 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQ--PDKQIIPSPEE 81 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---------------
T ss_pred HHHHHHhchhhHHHHHHHhcC--CCCCcCCCCCC
Confidence 344444444444444432111 15667655444
No 400
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=41.00 E-value=4.4e+02 Score=28.08 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 016340 298 ADVNSKLIKN 307 (391)
Q Consensus 298 ~~ln~~L~~n 307 (391)
++|-+.|.+.
T Consensus 541 relreslekq 550 (641)
T KOG3915|consen 541 RELRESLEKQ 550 (641)
T ss_pred HHHHHHHHHH
Confidence 4444555443
No 401
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.99 E-value=3.8e+02 Score=26.80 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHhHhHh
Q 016340 331 ATILDLEEQIRDLTVY 346 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~ 346 (391)
+++.+++++|+++-..
T Consensus 246 ~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 246 NKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555444443
No 402
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.95 E-value=1.4e+02 Score=31.76 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEA 293 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e 293 (391)
+..+|+++|++++.|
T Consensus 77 kasELEKqLaaLrqE 91 (475)
T PRK13729 77 TAAQMQKQYEEIRRE 91 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555433
No 403
>PTZ00464 SNF-7-like protein; Provisional
Probab=40.95 E-value=3.2e+02 Score=25.83 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=9.2
Q ss_pred HHHhhHHHHHHhHhHh
Q 016340 331 ATILDLEEQIRDLTVY 346 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~ 346 (391)
+.|.+|.++++|.|-+
T Consensus 124 d~Vd~l~Dei~E~~e~ 139 (211)
T PTZ00464 124 DKVEDLQDELADLYED 139 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666666553
No 404
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.91 E-value=3.6e+02 Score=26.43 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.5
Q ss_pred HHHHhhHHHHHHhH
Q 016340 330 DATILDLEEQIRDL 343 (391)
Q Consensus 330 ~~~i~dL~EQ~rDl 343 (391)
..++..|+++|.+|
T Consensus 283 ~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 283 QEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 34566666666665
No 405
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=40.89 E-value=3.5e+02 Score=26.26 Aligned_cols=7 Identities=57% Similarity=0.838 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 016340 337 EEQIRDL 343 (391)
Q Consensus 337 ~EQ~rDl 343 (391)
++++-+|
T Consensus 165 e~elv~L 171 (281)
T PRK06669 165 EEEIVEL 171 (281)
T ss_pred HHHHHHH
Confidence 3333333
No 406
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=40.89 E-value=3.1e+02 Score=25.61 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHhHhHhh
Q 016340 328 LRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..-+.+|+.|+.||-.-+
T Consensus 156 Ek~~a~~~Lk~ei~~lAv~i 175 (205)
T PRK06231 156 ERRELKEQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888887655
No 407
>PRK04325 hypothetical protein; Provisional
Probab=40.79 E-value=1.8e+02 Score=22.81 Aligned_cols=14 Identities=36% Similarity=0.266 Sum_probs=7.8
Q ss_pred HHHhhHHHHHHhHh
Q 016340 331 ATILDLEEQIRDLT 344 (391)
Q Consensus 331 ~~i~dL~EQ~rDlm 344 (391)
.+|..|+.|++-|.
T Consensus 37 ~~I~~L~~ql~~L~ 50 (74)
T PRK04325 37 QTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 35556666665553
No 408
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=40.70 E-value=3.2e+02 Score=29.55 Aligned_cols=95 Identities=11% Similarity=0.174 Sum_probs=47.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 016340 224 GALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV-ADVNS 302 (391)
Q Consensus 224 ~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~-~~ln~ 302 (391)
+....++++.+++.+..++....+.-++.|-.. +... .++.......+.++..++.+......+ ..|-.
T Consensus 386 e~~~~k~l~k~~l~~~d~~~~~~~~~~~~~~~~------~~~~----~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~ 455 (542)
T PF10079_consen 386 EPKVAKKLEKLGLSVEDVFEDGEELLKERWLEE------QDPS----EIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEG 455 (542)
T ss_pred cHHHHHHHHHcCCCHHHHhhccHHHHHHHHHHh------cccc----cHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 444567788888888888755554433333111 0111 111122233334444444444443332 13444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLRL 328 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~~ 328 (391)
...+|.....+.++.|+.+.....+.
T Consensus 456 ~~e~~~~~~~~ql~~Le~k~~~a~~r 481 (542)
T PF10079_consen 456 LVEKNESKILKQLDYLEKKLLKAEKR 481 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777777766555443
No 409
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.68 E-value=6.4e+02 Score=29.26 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=16.5
Q ss_pred eEEEEecCChhhHHHHH---HHhcCc
Q 016340 15 YSVLIKLVDQLTADEFY---SNLNGK 37 (391)
Q Consensus 15 y~vLlkF~~~~~A~~f~---~~~ng~ 37 (391)
-||-|.|.....|...- -+|||.
T Consensus 647 QmVsLNfQT~dlaMQlN~g~FEyNG~ 672 (1189)
T KOG1265|consen 647 QMVSLNFQTPDLAMQLNMGMFEYNGG 672 (1189)
T ss_pred eEEEeeccCccHHHHhhhhheeecCC
Confidence 48999999988887643 245663
No 410
>PF12773 DZR: Double zinc ribbon
Probab=40.65 E-value=29 Score=24.43 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=4.0
Q ss_pred cccccCCcC
Q 016340 77 CPICLERLD 85 (391)
Q Consensus 77 CpiCle~ld 85 (391)
||.|...+.
T Consensus 1 Cp~Cg~~~~ 9 (50)
T PF12773_consen 1 CPHCGTPNP 9 (50)
T ss_pred CCCcCCcCC
Confidence 444444443
No 411
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.47 E-value=5.7e+02 Score=28.63 Aligned_cols=13 Identities=8% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEE 292 (391)
Q Consensus 280 ~~~l~~~l~~~~~ 292 (391)
+.+++..|..+.+
T Consensus 591 L~~~E~rLNeARR 603 (739)
T PF07111_consen 591 LSEMEKRLNEARR 603 (739)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334443333
No 412
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.03 E-value=1.8e+02 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=8.3
Q ss_pred HHHhhHHHHHHhHh
Q 016340 331 ATILDLEEQIRDLT 344 (391)
Q Consensus 331 ~~i~dL~EQ~rDlm 344 (391)
.+|..|+.|++-|.
T Consensus 36 ~~I~~L~~~l~~L~ 49 (72)
T PRK02793 36 MEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666654
No 413
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.90 E-value=4.3e+02 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 296 AVADVNSKLIKNQEIMRKKFKEIEEREITS 325 (391)
Q Consensus 296 ~~~~ln~~L~~nq~~~~~~~~~le~~~~~~ 325 (391)
.+++-|..|+-..+.+.....+.|++.+.+
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 344555555555555555555555544443
No 414
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.72 E-value=1.8e+02 Score=22.69 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 274 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 274 ~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
+.....+..|..+-+++...--......+.|+.........+..+..+...... ++..|++-++
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~----~~~~l~~~l~ 71 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK----ELESLEERLK 71 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh
No 415
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.71 E-value=20 Score=33.81 Aligned_cols=13 Identities=38% Similarity=1.288 Sum_probs=10.5
Q ss_pred ceeeecccccccc
Q 016340 136 NLWVCLICGFVGC 148 (391)
Q Consensus 136 ~lwiCL~CG~vgC 148 (391)
..|+|..||+..=
T Consensus 47 ~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 47 EVWVCPHCGYAAF 59 (214)
T ss_pred eEEECCCCCCccc
Confidence 5889999988853
No 416
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=39.53 E-value=4.8e+02 Score=27.50 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 247 ETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSL 326 (391)
Q Consensus 247 esQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~ 326 (391)
|+.|.-|+.-+..+.++... |+..++..+......|+.+|....++...+-..-..=....+.-...+.++-.......
T Consensus 3 e~rr~rh~~~~~~~~~e~~~-i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~ 81 (473)
T PF14643_consen 3 ERRRERHEKALESFHEELAS-ISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHS 81 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHhHhH
Q 016340 327 RLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf 345 (391)
..+...|.+|.+.+.++-+
T Consensus 82 ~~r~~~I~~l~~~L~~~E~ 100 (473)
T PF14643_consen 82 QKRKQWIKELDEDLEELEK 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 417
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.49 E-value=4.4e+02 Score=27.00 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=7.1
Q ss_pred HHHHHHhcCcccC
Q 016340 28 DEFYSNLNGKRFS 40 (391)
Q Consensus 28 ~~f~~~~ng~~f~ 40 (391)
..|....+.+|++
T Consensus 15 ~~f~~~~~~kpl~ 27 (359)
T PF10498_consen 15 KDFCKKRKMKPLS 27 (359)
T ss_pred HHHhhhcCCCCCC
Confidence 4556555555553
No 418
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.24 E-value=15 Score=24.16 Aligned_cols=10 Identities=50% Similarity=1.434 Sum_probs=5.9
Q ss_pred ceeeeccccc
Q 016340 136 NLWVCLICGF 145 (391)
Q Consensus 136 ~lwiCL~CG~ 145 (391)
..|.|.+||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4566666654
No 419
>PRK00295 hypothetical protein; Provisional
Probab=39.19 E-value=1.8e+02 Score=22.39 Aligned_cols=12 Identities=33% Similarity=0.338 Sum_probs=5.9
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
+|..|+.|++-|
T Consensus 34 ~I~~L~~ql~~L 45 (68)
T PRK00295 34 VIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 420
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=39.14 E-value=18 Score=29.70 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=27.5
Q ss_pred cccCCCccccccCCCC-CcccccCcccceeeecccccccc
Q 016340 110 VLSCQVCRFCHQQDER-PTCSVCGTVENLWVCLICGFVGC 148 (391)
Q Consensus 110 ~~~CP~Cr~~~~~~~~-~~C~~C~~~~~lwiCL~CG~vgC 148 (391)
+..||+|-..+.|-.. --|..|......--|.+||.+|=
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV 66 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGV 66 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecCCcc
Confidence 6788888765544332 35778887777777888888874
No 421
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.13 E-value=16 Score=36.14 Aligned_cols=31 Identities=29% Similarity=0.672 Sum_probs=23.7
Q ss_pred CCCccccccCCcCCCCCCceeecC----CCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILSTIC----DHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C----~H~F~~~Cl~~ 107 (391)
.-+.|.+|.|||++. --+.| .|.||-.|-..
T Consensus 267 apLcCTLC~ERLEDT----HFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT----HFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccC----ceeecCCCcccceecccCHH
Confidence 457899999999764 33346 69999999755
No 422
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.08 E-value=7.6e+02 Score=29.70 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcccHHHHHHHH------HHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSK--RESLIPETVEKAV------ASKMQDIQNELDIC 290 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~--~~~~~~~~~~~~~------~~~~~~l~~~l~~~ 290 (391)
|...||+.|..=|.+=.+++.+ ...++.+|+.+++ -+...+|+++...|
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~l 1126 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQL 1126 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788777777666655432 2334555555432 23445555554433
No 423
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.86 E-value=3.1e+02 Score=25.12 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=10.0
Q ss_pred HHHHHhhHHHHHHhHh
Q 016340 329 RDATILDLEEQIRDLT 344 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlm 344 (391)
.++++..|++..++|.
T Consensus 163 ~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 163 LEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777766664
No 424
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.73 E-value=14 Score=36.43 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=20.5
Q ss_pred CccccccCCcCCCCC-----CceeecCCCcccchhhhc
Q 016340 75 PTCPICLERLDPDTS-----GILSTICDHSFQCSCTAK 107 (391)
Q Consensus 75 ~tCpiCle~ld~~~~-----g~it~~C~H~F~~~Cl~~ 107 (391)
..|-+||+.-..... -|.-.+|....|-.|+.-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M 296 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAM 296 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhc
Confidence 468888886433222 233456878888888743
No 425
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.61 E-value=2.3e+02 Score=23.56 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 246 LETQRQYYESLLAEAK 261 (391)
Q Consensus 246 LesQR~yyE~~l~~~~ 261 (391)
|..|...|+..+..+.
T Consensus 4 l~~~~~~l~~~i~~l~ 19 (129)
T cd00890 4 LAAQLQQLQQQLEALQ 19 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 426
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.50 E-value=2.1e+02 Score=23.16 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=9.0
Q ss_pred HHHHHhhHHHHHHhHhHhh
Q 016340 329 RDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlmf~l 347 (391)
.++++..|+.++..|.-.+
T Consensus 77 l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444433
No 427
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.34 E-value=2.5e+02 Score=25.55 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 016340 241 LLATQLETQRQYYE 254 (391)
Q Consensus 241 ll~sqLesQR~yyE 254 (391)
.+.+..-+||..|=
T Consensus 93 ~~~~~fraQRN~YI 106 (192)
T PF05529_consen 93 VLAKKFRAQRNMYI 106 (192)
T ss_pred HHHHHHHHHHhHHH
Confidence 35566677887776
No 428
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=38.33 E-value=93 Score=29.02 Aligned_cols=93 Identities=23% Similarity=0.392 Sum_probs=52.3
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccccCCCCCcccccCcccc--------ee-
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVEN--------LW- 138 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~~~~~~~C~~C~~~~~--------lw- 138 (391)
..+.+.|++|-+.= =+.-.|-|+.|..| .|. ...||.+. .|..||.... .|
T Consensus 57 ~~~~~~C~nCg~~G------H~~~DCP~~iC~~C--~~~~H~s~~C~~~~---------~C~~Cg~~GH~~~dC~P~~~~ 119 (190)
T COG5082 57 REENPVCFNCGQNG------HLRRDCPHSICYNC--SWDGHRSNHCPKPK---------KCYNCGETGHLSRDCNPSKDQ 119 (190)
T ss_pred cccccccchhcccC------cccccCChhHhhhc--CCCCcccccCCccc---------ccccccccCccccccCccccc
Confidence 34688999998752 23445888888888 564 34566652 2444443322 12
Q ss_pred --eecccccccccCCCCcccccccCCCCCccccc---CCCceeEecCCchhhhh
Q 016340 139 --VCLICGFVGCGRYKEGHAVRHWKDTQHWYSLD---LRTQQIWDYVGDNYVHR 187 (391)
Q Consensus 139 --iCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~---l~t~~vwcy~cd~~Vhr 187 (391)
.|-.|+.. .|...--....-.|.+. .....++||.|.+.=|-
T Consensus 120 ~~~C~~C~s~-------~H~s~~Cp~~~k~y~~~~~~~~~~~~~cy~c~~~~H~ 166 (190)
T COG5082 120 QKSCFDCNST-------RHSSEDCPSIWKHYVLNNGDGHPIKKFCYSCGSAGHF 166 (190)
T ss_pred CcceeccCCC-------ccccccCcccccccccccCCCcceeeeccccCCcccc
Confidence 23333322 33333333344444443 45678889999888773
No 429
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.24 E-value=2.6e+02 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=14.3
Q ss_pred HHHhhHHHHHHhHhHhhhhHH
Q 016340 331 ATILDLEEQIRDLTVYIEAQK 351 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le~q~ 351 (391)
+.|..+++||.-|--||..++
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777775543
No 430
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=38.09 E-value=1.6e+02 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 277 ASKMQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
-+.+..||.|+.+++-|+....+=.+.|..
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~ 32 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSR 32 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456778888888888887665443344443
No 431
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=38.06 E-value=1.5e+02 Score=33.26 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 298 ADVNSKLIKNQEI--MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 298 ~~ln~~L~~nq~~--~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
..+++.+.++|.+ ++++++.+++++-...... .+++++++.+...-+-=++++++.+
T Consensus 216 ~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~~~~p~evk~k~~~ 274 (782)
T COG0466 216 KKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEKLKLPKEAKEKAEK 274 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 4566677777775 5777777766653322112 5688888888888887777777765
No 432
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.70 E-value=1.9e+02 Score=22.30 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~l 318 (391)
....|.+++..+..|...+.+-|+.-+...+.+..+++.+
T Consensus 22 EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 22 ENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344555555555555555555554444444444444433
No 433
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=37.66 E-value=14 Score=33.70 Aligned_cols=21 Identities=48% Similarity=0.854 Sum_probs=0.0
Q ss_pred CcccccCcc---cceeeecccccc
Q 016340 126 PTCSVCGTV---ENLWVCLICGFV 146 (391)
Q Consensus 126 ~~C~~C~~~---~~lwiCL~CG~v 146 (391)
+.|.+||.. ++++.|.+||..
T Consensus 135 ~vC~vCGy~~~ge~P~~CPiCga~ 158 (166)
T COG1592 135 WVCPVCGYTHEGEAPEVCPICGAP 158 (166)
T ss_pred EEcCCCCCcccCCCCCcCCCCCCh
No 434
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.59 E-value=33 Score=25.67 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=30.9
Q ss_pred CCccccccCCcCCCCCCceeecC--CCcccchhhhccccccCCCccc
Q 016340 74 LPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C--~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
.|.|-.|-.-|.+.... ...| ..+||..|........||-|.-
T Consensus 5 rpnCE~C~~dLp~~s~~--A~ICSfECTFC~~C~e~~l~~~CPNCgG 49 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPE--AYICSFECTFCADCAETMLNGVCPNCGG 49 (57)
T ss_pred CCCccccCCCCCCCCCc--ceEEeEeCcccHHHHHHHhcCcCcCCCC
Confidence 57888898888654211 2235 4689999998877789999864
No 435
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=37.56 E-value=88 Score=28.19 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 299 DVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~ 315 (391)
+|...|+.+...+-...
T Consensus 92 ~l~e~lQ~~vq~l~~E~ 108 (155)
T PF07464_consen 92 ELQEKLQSAVQSLVQES 108 (155)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 436
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.51 E-value=5.2e+02 Score=27.29 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=16.3
Q ss_pred CcccccccCCCCCcccccCCCceeEecCCchhh
Q 016340 153 EGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185 (391)
Q Consensus 153 ~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~V 185 (391)
..|+..-.+...| .++.+.+.+|+|.|-.-.
T Consensus 139 ~se~gs~~~~~dh--eln~e~~dny~~qsl~k~ 169 (502)
T KOG0982|consen 139 GSESGSRLKREDH--ELNTESWDNYKYQSLEKD 169 (502)
T ss_pred cchhhccccccch--hhccchHHHHHHHHHHhh
Confidence 3344433344445 344455677888775443
No 437
>PF14369 zf-RING_3: zinc-finger
Probab=37.26 E-value=13 Score=25.04 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.7
Q ss_pred ceeEecCCchhhhh
Q 016340 174 QQIWDYVGDNYVHR 187 (391)
Q Consensus 174 ~~vwcy~cd~~Vhr 187 (391)
++-|||.|+..|+-
T Consensus 1 ~~ywCh~C~~~V~~ 14 (35)
T PF14369_consen 1 QRYWCHQCNRFVRI 14 (35)
T ss_pred CCEeCccCCCEeEe
Confidence 36799999999984
No 438
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=37.08 E-value=5.7e+02 Score=27.63 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 224 GALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSK 303 (391)
Q Consensus 224 ~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~ 303 (391)
+.+..-+.++.++.-...|--+ |..+-...+..-...-..-.+-+.-++..++..|.+..+|.....+-|.+
T Consensus 166 ekLk~~~een~~lr~k~~llk~--------Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk 237 (596)
T KOG4360|consen 166 EKLKPLEEENTQLRSKAMLLKT--------ETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK 237 (596)
T ss_pred hhcCChHHHHHHHHHHHHHHHh--------hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHhHhHhh-hhHHHhhcc
Q 016340 304 LIKNQEIMRKKFKEIEERE----------ITSLRLRDATILDLEEQIRDLTVYI-EAQKTLTNM 356 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~----------~~~~~~~~~~i~dL~EQ~rDlmf~l-e~q~ki~~~ 356 (391)
|...+..++.+++.+.-+. +..-+...++..+|+++-..+|-.+ ||++.|+..
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 439
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.00 E-value=2.3e+02 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 246 LETQRQYYESLLAEAK 261 (391)
Q Consensus 246 LesQR~yyE~~l~~~~ 261 (391)
|.....+.+..+..+.
T Consensus 12 l~~~~~~~~~~~~~l~ 27 (127)
T smart00502 12 LRKKAAELEDALKQLI 27 (127)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3344444444444433
No 440
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=36.97 E-value=4.5e+02 Score=26.40 Aligned_cols=17 Identities=24% Similarity=0.045 Sum_probs=10.4
Q ss_pred hhhHHHHHHHhcCcccC
Q 016340 24 QLTADEFYSNLNGKRFS 40 (391)
Q Consensus 24 ~~~A~~f~~~~ng~~f~ 40 (391)
..+-+.|.+.++=+|.+
T Consensus 28 lnye~~flk~~~lkp~s 44 (384)
T KOG0972|consen 28 LNYEDGFLKLVVLKPIS 44 (384)
T ss_pred hhHHHHHHHHHhcccch
Confidence 34566777776666554
No 441
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.76 E-value=5.3e+02 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAE 259 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~ 259 (391)
..|++.+.-|--. |...||.-++||-.++-.
T Consensus 135 srkl~qLr~ek~~-lEq~leqeqef~vnKlm~ 165 (552)
T KOG2129|consen 135 SRKLKQLRHEKLP-LEQLLEQEQEFFVNKLMN 165 (552)
T ss_pred hHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHH
Confidence 3566555422111 223344445566655443
No 442
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.68 E-value=3.1e+02 Score=24.44 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHHhHhHhhh
Q 016340 328 LRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~le 348 (391)
....||.+|+.++.|+=+-++
T Consensus 93 aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 93 AVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334578888888887765443
No 443
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.67 E-value=1.8e+02 Score=21.72 Aligned_cols=9 Identities=44% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016340 283 IQNELDICE 291 (391)
Q Consensus 283 l~~~l~~~~ 291 (391)
|+.++.+++
T Consensus 5 lEn~~~~~~ 13 (55)
T PF05377_consen 5 LENELPRIE 13 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 444
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=36.59 E-value=2.5e+02 Score=23.29 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 016340 242 LATQLETQRQYYESLLAEAKSKRES 266 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~ 266 (391)
|..-|+.|...|..++.-+.++.+.
T Consensus 6 L~~~L~~~~~~~~~L~~ll~~e~~~ 30 (143)
T PF05130_consen 6 LIELLEEQIELLQELLELLEEEREA 30 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888887777766543
No 445
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.54 E-value=3.3e+02 Score=28.95 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHhH
Q 016340 331 ATILDLEEQIRDL 343 (391)
Q Consensus 331 ~~i~dL~EQ~rDl 343 (391)
+++.+|+.+++.|
T Consensus 159 ~~l~~l~~~l~~l 171 (525)
T TIGR02231 159 KQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555443
No 446
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.51 E-value=3.1e+02 Score=24.46 Aligned_cols=24 Identities=4% Similarity=0.245 Sum_probs=14.3
Q ss_pred HHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 332 TILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
.-.++=++|-+-+-||+.-..+++
T Consensus 96 ~F~~~L~~LD~cl~Fl~~h~~fke 119 (157)
T PF04136_consen 96 SFKPMLSRLDECLEFLEEHPNFKE 119 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334455566667777776555554
No 447
>PRK11020 hypothetical protein; Provisional
Probab=36.46 E-value=2.8e+02 Score=23.84 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAV 297 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~ 297 (391)
..++.|.++||++......+
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776655443
No 448
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.30 E-value=3.5e+02 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 320 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~ 320 (391)
+...++.++..++.....+...-..|......+..++.+++.
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333444444444444444443
No 449
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.02 E-value=4e+02 Score=25.61 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=8.7
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
.-+.+|+.|+.|+.+-+
T Consensus 116 ~a~~~L~~~v~~la~~~ 132 (250)
T PRK14474 116 EFFKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 450
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.95 E-value=7.2e+02 Score=28.47 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=3.6
Q ss_pred HHHHHhHhHh
Q 016340 337 EEQIRDLTVY 346 (391)
Q Consensus 337 ~EQ~rDlmf~ 346 (391)
++.+..+-..
T Consensus 430 ~~~~~~~~~~ 439 (908)
T COG0419 430 EEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 451
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.81 E-value=2.3e+02 Score=22.63 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKS 262 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~--sqLesQR~yyE~~l~~~~~ 262 (391)
++=+|+|..||..+.. +.+..|+.-||.++...-.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~ 39 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQ 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3446888888888765 4555677777777665443
No 452
>PF15294 Leu_zip: Leucine zipper
Probab=35.81 E-value=2.5e+02 Score=27.80 Aligned_cols=69 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHhH
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR-----LRDATILDLEEQIRDL 343 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~-----~~~~~i~dL~EQ~rDl 343 (391)
.+...+..|+.+.++++.-++.+...--...+.-..+...++++......... .+.+++.||+.++..+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH
No 453
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.75 E-value=1.9e+02 Score=29.88 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q 016340 250 RQYYESLLAEAKSK 263 (391)
Q Consensus 250 R~yyE~~l~~~~~~ 263 (391)
..||+..+....+.
T Consensus 217 ~~Yf~~l~~~f~d~ 230 (406)
T PF02388_consen 217 LEYFENLYDAFGDK 230 (406)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCCC
Confidence 57899888887443
No 454
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.74 E-value=1.9e+02 Score=29.73 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 320 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~ 320 (391)
.++.++++++++++++. +|.+.|.++. ..+++++++++
T Consensus 243 ~~~~l~~~~~~~~~~i~---~l~~~l~~~~-k~~~k~~~~~~ 280 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIE---KLEEKLEKNP-KKKNKLKELEE 280 (406)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHH-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhCc-chhhHHHHHHH
Confidence 34455555555554443 3333444444 33344444433
No 455
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.54 E-value=3.7e+02 Score=24.96 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHhH
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER---EITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~---~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
.+.....++....+.++++......++..+..-...+..++.++++. .+......+.+|..|+-.+..+
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.40 E-value=4.2e+02 Score=25.57 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.1
Q ss_pred HhhHHHHHHhHhHhhhhHHHhhc
Q 016340 333 ILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 333 i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
|.+=-|++++|--|++||-...+
T Consensus 207 il~~~e~i~~L~~fv~AQl~Yh~ 229 (242)
T cd07600 207 VLDNPEPLQLLKELVKAQLAYHK 229 (242)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34446799999999999866544
No 457
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.40 E-value=1.6e+02 Score=24.57 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 282 DIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 282 ~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
++++++..++.+.+.++.-|..|..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333433333
No 458
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=35.38 E-value=2e+02 Score=21.84 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=12.7
Q ss_pred HHHHhhHHHHHHhHhHhh
Q 016340 330 DATILDLEEQIRDLTVYI 347 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~l 347 (391)
...|.-|+++|+++.-..
T Consensus 46 ~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 46 NQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 357888888888876543
No 459
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=35.26 E-value=4.1e+02 Score=28.88 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAE 259 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~ 259 (391)
++.+|-.-.-|..|-..---+||.-||+=|.+
T Consensus 18 ~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKk 49 (575)
T KOG2150|consen 18 DEGVEIFDEIYEKLHSANNVSQKEKLESDLKK 49 (575)
T ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 45666677778888888888999999965443
No 460
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.99 E-value=2.3e+02 Score=27.98 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=9.6
Q ss_pred HHHHHHhhHHHHHHhHhHh
Q 016340 328 LRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~ 346 (391)
.|+.++.=|+.|+.-.--.
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkq 110 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQ 110 (307)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445555566555544433
No 461
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.84 E-value=9.4e+02 Score=29.53 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.2
Q ss_pred ceeEecCCc
Q 016340 174 QQIWDYVGD 182 (391)
Q Consensus 174 ~~vwcy~cd 182 (391)
..|++|.++
T Consensus 215 ~fl~~yll~ 223 (1486)
T PRK04863 215 RSLRDYLLP 223 (1486)
T ss_pred HHHHHHcCC
Confidence 444455443
No 462
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.83 E-value=2.8e+02 Score=32.37 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=11.2
Q ss_pred CCcccccCCCceeEecCCc
Q 016340 164 QHWYSLDLRTQQIWDYVGD 182 (391)
Q Consensus 164 ~H~~~~~l~t~~vwcy~cd 182 (391)
+|.++--+-|++++|-...
T Consensus 220 sHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 220 SHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred cceeEEEEEeeEEeccccC
Confidence 4665555556777665543
No 463
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=34.70 E-value=2.5e+02 Score=22.84 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.0
Q ss_pred HHHHhhHHHHH
Q 016340 330 DATILDLEEQI 340 (391)
Q Consensus 330 ~~~i~dL~EQ~ 340 (391)
-++|.+|++|+
T Consensus 76 ~~eis~L~~~l 86 (86)
T PF12711_consen 76 LQEISELRDQL 86 (86)
T ss_pred HHHHHHHHhhC
Confidence 36788888774
No 464
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=5.9e+02 Score=27.08 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 016340 232 EAIVDEYNRLL--ATQLETQRQYYESLLAEAK 261 (391)
Q Consensus 232 e~~~~Ey~~ll--~sqLesQR~yyE~~l~~~~ 261 (391)
+.+..||...+ -.+|||-+..|++...+++
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQFEEQNSELE 275 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56677777654 4578888888887777765
No 465
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.69 E-value=3.7e+02 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQR 250 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR 250 (391)
..+=..++.+|...+...++..+
T Consensus 116 ~N~C~e~~~~~~~~~~~~~~~~~ 138 (176)
T PF12999_consen 116 PNTCAELGKEYREELEEEEEIYK 138 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788888888766655433
No 466
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=34.60 E-value=2.4e+02 Score=22.49 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 312 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~ 312 (391)
++..+|..+|..-++|...+..+..+|+.....+.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt 39 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYT 39 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766666666665444443
No 467
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.56 E-value=5.5e+02 Score=30.30 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHhhHHHHHHhHhHhhhhHHHhhccCCC
Q 016340 331 ATILDLEEQIRDLTVYIEAQKTLTNMTDS 359 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le~q~ki~~~~~~ 359 (391)
..|.-+.+++.++-| =-+++|++.+++
T Consensus 1204 ~missf~d~laeiE~--LrnErIKkHGaS 1230 (1439)
T PF12252_consen 1204 SMISSFNDRLAEIEF--LRNERIKKHGAS 1230 (1439)
T ss_pred HHHHHHHhhhhHHHH--HHHHHhhccCCC
Confidence 466777788888888 367888887654
No 468
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=34.49 E-value=3.5e+02 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 279 KMQDIQNELDICEEAKKAV--ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~--~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
.....+.++..+++.++.. .++-+.|.+.|+.|+.+++ .++.. +++..+.|+.+..+.++--
T Consensus 48 ~yknyk~ki~eLke~lK~~~NAEleekll~lq~lfq~Kl~---aKL~a-LKAak~~i~~~~d~d~~~~ 111 (160)
T PF03978_consen 48 AYKNYKKKINELKEDLKDVSNAELEEKLLKLQKLFQDKLE---AKLAA-LKAAKQKIEGIQDKDQECA 111 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHhcchhhhhHHHH
Confidence 4455556666666655443 3777788888888887653 34433 3334457888877766643
No 469
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=34.48 E-value=3.5e+02 Score=29.38 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 016340 232 EAIVDEYNRLLATQLE---TQRQYYESLL 257 (391)
Q Consensus 232 e~~~~Ey~~ll~sqLe---sQR~yyE~~l 257 (391)
++|...|..+|..|+- +|-.||..+.
T Consensus 63 ~sI~R~~d~fl~~q~~~a~s~~s~~~t~~ 91 (552)
T COG1256 63 VSIQRLRDEFLTNQYRNANSQSSYLDTRA 91 (552)
T ss_pred EeeeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455555555555543 3344444443
No 470
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=34.34 E-value=4.9e+02 Score=26.08 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 250 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 329 (391)
Q Consensus 250 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~ 329 (391)
|.--++.+.....+.....+ .+...+..+--.|-.+++++++|...+-. ..+.+.++|...-..+...-
T Consensus 173 r~~lkee~d~S~k~ik~~F~-~l~~cL~dREvaLl~EmdkVK~EAmeiL~----------aRqkkAeeLkrltd~A~~Ms 241 (302)
T PF07139_consen 173 RVVLKEEMDSSIKKIKQTFA-ELQSCLMDREVALLAEMDKVKAEAMEILD----------ARQKKAEELKRLTDRASQMS 241 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhcC
Q ss_pred HHHHhhHHHHHH
Q 016340 330 DATILDLEEQIR 341 (391)
Q Consensus 330 ~~~i~dL~EQ~r 341 (391)
++|+.||+.+|.
T Consensus 242 E~Ql~ELRadIK 253 (302)
T PF07139_consen 242 EEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHHHHH
No 471
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.98 E-value=2.2e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 316 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~ 316 (391)
+..+-.++..++..+..+-+-|..|+-.-++++.++.
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433334444443
No 472
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=33.86 E-value=4.1e+02 Score=24.98 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 016340 308 QEIMRKKFKEIEEREITSLRLRDATILDLEEQ 339 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ 339 (391)
...+..+++++...........+.+|.+.+++
T Consensus 73 ~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~ 104 (215)
T PF07083_consen 73 IKEFEAKIKELIAPIDEASDKIDEQIKEFEEK 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 473
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.82 E-value=4.6e+02 Score=26.35 Aligned_cols=8 Identities=50% Similarity=1.086 Sum_probs=4.3
Q ss_pred chhhhhhh
Q 016340 182 DNYVHRLN 189 (391)
Q Consensus 182 d~~Vhrl~ 189 (391)
++|+.+|.
T Consensus 153 ~~Fl~~L~ 160 (344)
T PF12777_consen 153 DNFLQRLK 160 (344)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 34666554
No 474
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=33.74 E-value=4.1e+02 Score=25.02 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHH--HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 250 RQYYE--SLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 327 (391)
Q Consensus 250 R~yyE--~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~ 327 (391)
|+|=| .+|.=+....+.....+- +..+++..|...+..+...++.+...++.+....+.+...++.+..+++..-.
T Consensus 81 rK~eEVarkL~iiE~dLE~~eeraE--~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 81 RKYEEVARKLVIIEGELERAEERAE--AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHH---HHHhhHHHHHHhH
Q 016340 328 LRD---ATILDLEEQIRDL 343 (391)
Q Consensus 328 ~~~---~~i~dL~EQ~rDl 343 (391)
--+ ..|.-|+.++-||
T Consensus 159 rAE~aERsVakLeke~Ddl 177 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDL 177 (205)
T ss_pred hHHHHHHHHHHHcccHHHH
No 475
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.71 E-value=8e+02 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 234 IVDEYNRLLATQLETQ 249 (391)
Q Consensus 234 ~~~Ey~~ll~sqLesQ 249 (391)
+..|-..|+.+|.+-|
T Consensus 391 Lr~elaql~a~r~q~e 406 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLE 406 (980)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 476
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=33.70 E-value=2.8e+02 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016340 298 ADVNSKLIKNQEIMRKKFKEIEE 320 (391)
Q Consensus 298 ~~ln~~L~~nq~~~~~~~~~le~ 320 (391)
+.|.+.|.+..++-++.|+++++
T Consensus 75 ~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 75 KKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 477
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.67 E-value=3.8e+02 Score=24.66 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=4.8
Q ss_pred HHhhHHHHHH
Q 016340 332 TILDLEEQIR 341 (391)
Q Consensus 332 ~i~dL~EQ~r 341 (391)
++.-|+.|+.
T Consensus 178 ~~~ql~~~l~ 187 (189)
T PF10211_consen 178 QNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHh
Confidence 4445555443
No 478
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.41 E-value=4.9e+02 Score=25.80 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhc
Q 016340 253 YESLLAEAKSKRES 266 (391)
Q Consensus 253 yE~~l~~~~~~~~~ 266 (391)
|-.+|++++.+.+.
T Consensus 40 yk~kLa~Lq~~Lee 53 (291)
T KOG4466|consen 40 YKDKLAQLQAQLEE 53 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888776543
No 479
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.22 E-value=3.5e+02 Score=28.57 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH-----------HHHHHHHH
Q 016340 249 QRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA-----------KKAVA-----------DVNSKLIK 306 (391)
Q Consensus 249 QR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e-----------~~~~~-----------~ln~~L~~ 306 (391)
|.+|-...+.++....+.. +.++..++++|.+|+++++| .+.++ -.|+.+++
T Consensus 236 Qnk~akehv~km~kdle~L------q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rk 309 (575)
T KOG4403|consen 236 QNKKAKEHVNKMMKDLEGL------QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRK 309 (575)
T ss_pred hhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 307 NQEIMRKKFKEIEEREIT 324 (391)
Q Consensus 307 nq~~~~~~~~~le~~~~~ 324 (391)
.++.++..++++|.++..
T Consensus 310 elE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHh
No 480
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=33.20 E-value=3.4e+02 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.283 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHhHhHhhh
Q 016340 330 DATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le 348 (391)
+.+.++|=+|=+||+-|--
T Consensus 95 e~qLE~lm~qHKdLwefh~ 113 (134)
T PF15233_consen 95 EEQLEDLMGQHKDLWEFHM 113 (134)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3566777777777766654
No 481
>PRK00736 hypothetical protein; Provisional
Probab=33.01 E-value=2.3e+02 Score=21.80 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 282 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 282 ~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
.+.+++..|+..+.+....-+.|-+-.-.....|..|.. ++.-|.++++++
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~-----------ql~~L~~rl~~~ 52 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRK-----------KLDALTERFLSL 52 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh
No 482
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.88 E-value=5.8e+02 Score=26.52 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCcCCCC-------CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 016340 202 SPCMSHEAHCGTCECSED-------SGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEK 274 (391)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~ 274 (391)
+.+++.+.+.++.....+ ........+.-+..+..|...+-..+.. ++..++.++...-.++.
T Consensus 178 SecSS~tS~S~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~el~eik~~~~~-----L~~~~e~Lk~~~~~e~~----- 247 (395)
T PF10267_consen 178 SECSSVTSGSIDANSNSSNSGGSSQGSSVSSQQNLGLQKILEELREIKESQSR-----LEESIEKLKEQYQREYQ----- 247 (395)
T ss_pred cccccCCCCCCCCCCCCCCCCcccccccccccccchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhh
Q 016340 275 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 354 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~ 354 (391)
.+...+++-+.+.+++++.+..+.+ .-+..+..++..+..+|++..=+-.++-..|.|.=|....=|.-|| +....
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE-~~~~Q 323 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTE---LHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE-QQQQQ 323 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHhh
Q ss_pred ccCCCCCcCCcE
Q 016340 355 NMTDSDGIKGGT 366 (391)
Q Consensus 355 ~~~~~~ei~~g~ 366 (391)
+...-+.+.+..
T Consensus 324 q~~q~e~~~n~~ 335 (395)
T PF10267_consen 324 QVVQLEGTENSR 335 (395)
T ss_pred hhhhhccccccc
No 483
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.68 E-value=1.8e+02 Score=20.60 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 274 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 315 (391)
Q Consensus 274 ~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~ 315 (391)
++++.-...|+..++.+..+-..|..-|..|......+..++
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>PHA03332 membrane glycoprotein; Provisional
Probab=32.62 E-value=4.7e+02 Score=30.79 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----H
Q 016340 269 PETVEKAVASKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ----I 340 (391)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~~~~e~~~~----~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ----~ 340 (391)
+.+.-..+.+++..+.+.++++..-..++ -.+.-.|.+|+++...++..||++...-.-+....|..|-+| +
T Consensus 889 naaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~ 968 (1328)
T PHA03332 889 ATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELG 968 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HhHhHhhhhHHH
Q 016340 341 RDLTVYIEAQKT 352 (391)
Q Consensus 341 rDlmf~le~q~k 352 (391)
.|+.--|+.+.+
T Consensus 969 ~~~N~~ie~~~a 980 (1328)
T PHA03332 969 TTTNERIEEVMA 980 (1328)
T ss_pred hhHHHHHHHHHH
No 485
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=32.58 E-value=4.5e+02 Score=25.09 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 254 ESLLAEAKSKRESLIP----ETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 329 (391)
Q Consensus 254 E~~l~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~ 329 (391)
+.+|.+++......+. +-+.+.+...++.++....+++.-+=.+..--..+.+..+.++.--.++++....+....
T Consensus 102 ~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~kf~~~~E~a~~~M 181 (220)
T cd07617 102 QKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTEFDRQAEVTRLLL 181 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHhHhHhhhhH
Q 016340 330 DATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~q 350 (391)
..-..-=-|||++|--|++||
T Consensus 182 ~~il~~~~e~l~~L~~lv~AQ 202 (220)
T cd07617 182 EGISSTHVNHLRCLHEFVEAQ 202 (220)
T ss_pred HHHHhcChHHHHHHHHHHHHH
No 486
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.45 E-value=4.1e+02 Score=24.62 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQ 308 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq 308 (391)
.|+=.+...+..++ .-+.+.|.++.+. ++..+.+...+.+|+.++..++++...+...++..-+..
T Consensus 96 ~kLL~lk~~~~~~~-----e~~k~le~~~~~~---------~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei 161 (190)
T PF05266_consen 96 NKLLSLKDDQEKLL-----EERKKLEKKIEEK---------EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEI 161 (190)
T ss_pred HHHHHHHHhHHHHH-----HHHHHHHHHHHHH---------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016340 309 EIMRKKFKEIEEREITSLRLRDATILD 335 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~~~~~~~~~i~d 335 (391)
..++.....++++.....-..+.....
T Consensus 162 ~~lks~~~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 162 SRLKSEAEALKEEIENAELEFQSVAAA 188 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
No 487
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=32.33 E-value=1.5e+02 Score=27.61 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred ecccccccccCCCCcccccccCCCCCcccccCCCceeE--ecCCchhhhhhhcccccCCeecccCCCCCcCCCCCCCcCC
Q 016340 140 CLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIW--DYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECS 217 (391)
Q Consensus 140 CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vw--cy~cd~~Vhrl~~~k~dgklve~~~~~~~~~~~~~~~~~~ 217 (391)
|..||..-=|.++.| ||.+.|+...+-.....+| |-.|+.+..
T Consensus 90 CiSCG~~~~~~~dag----Hy~s~g~~~~lRF~~~N~~~qC~~CN~~~s------------------------------- 134 (189)
T PF05766_consen 90 CISCGRKHGGQWDAG----HYRSRGAAPELRFNEDNIHAQCKHCNRHLS------------------------------- 134 (189)
T ss_pred cccCCCcCCCCcccc----cccccccCcccccChhhHhHcCCccccccc-------------------------------
Q ss_pred CCCCccchhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhh
Q 016340 218 EDSGISGALFNSKVEAIVDEYNRLL----------ATQLETQRQYYESLLAEAKSKRE 265 (391)
Q Consensus 218 ~~~~~~~~~~~~K~e~~~~Ey~~ll----------~sqLesQR~yyE~~l~~~~~~~~ 265 (391)
|...+....=++-|+.|-...| ...|+.=+.+|-.++.+++++.+
T Consensus 135 ---gn~~~Yr~~Li~kiG~~~ve~Le~~~~~~k~~~~el~~i~~~y~~~~k~L~k~~a 189 (189)
T PF05766_consen 135 ---GNIVEYRIGLIEKIGQERVEWLEGPHEPRKWTIEELKAIIAIYRAKLKELKKEAA 189 (189)
T ss_pred ---cCHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
No 488
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.26 E-value=5e+02 Score=25.57 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 226 LFNSKVEAIVDEYNRLLATQLETQRQY--YESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSK 303 (391)
Q Consensus 226 ~~~~K~e~~~~Ey~~ll~sqLesQR~y--yE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~ 303 (391)
+...++..+..-..+|=..+++-.-.. +++.+...+.................++.....+++.+.++++....--+.
T Consensus 146 LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e 225 (269)
T PF05278_consen 146 LSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKE 225 (269)
T ss_pred hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 304 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
+.+....++.++.+++.+...+-+ .|..++-.|+.+
T Consensus 226 ~~~~i~e~~~rl~~l~~~~~~l~k----~~~~~~sKV~kf 261 (269)
T PF05278_consen 226 IKERITEMKGRLGELEMESTRLSK----TIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
No 489
>PRK10220 hypothetical protein; Provisional
Probab=32.23 E-value=30 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.859 Sum_probs=0.0
Q ss_pred CCCcccccCcc-----cceeeeccccc
Q 016340 124 ERPTCSVCGTV-----ENLWVCLICGF 145 (391)
Q Consensus 124 ~~~~C~~C~~~-----~~lwiCL~CG~ 145 (391)
..|.|..|.+. .++|+|..|++
T Consensus 2 ~lP~CP~C~seytY~d~~~~vCpeC~h 28 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDNGMYICPECAH 28 (111)
T ss_pred CCCcCCCCCCcceEcCCCeEECCcccC
No 490
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.19 E-value=3.1e+02 Score=24.18 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 255 SLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 327 (391)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~ 327 (391)
+.+.+.....+..++ .....+..|+.++++.+.......+--+.|.+|...+...+++.+++....+.
T Consensus 23 e~ll~~~~~LE~qL~-----~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 23 EQLLDRKRALERQLA-----ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
No 491
>smart00361 RRM_1 RNA recognition motif.
Probab=31.96 E-value=84 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred ceeecC----CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 4 NTVRND----AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 4 r~ir~d----~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+|+.+. +.+.-| +-+.|.+..+|......+||+.|.
T Consensus 24 ~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 24 KIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred EEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEEC
No 492
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.96 E-value=5.2e+02 Score=27.77 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 231 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI 310 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~ 310 (391)
++.+..+...++.+. .|-...|.+++++.... ..+.+.-...+.++...++++++++..+......+.+.++.
T Consensus 282 l~d~~~~l~~~~~~l-----~~dp~~L~ele~RL~~l--~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~e 354 (563)
T TIGR00634 282 VEEATRELQNYLDEL-----EFDPERLNEIEERLAQI--KRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEE 354 (563)
T ss_pred HHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 311 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 311 ~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
...--+++.+....+-+.+.+--..|++.+...+-.|
T Consensus 355 l~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 355 VDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 493
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=31.75 E-value=3.7e+02 Score=26.04 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 299 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ 299 (391)
...+++.|...-..++.+||| --+|++-.-+.+..+..+..........+|+.++..+..+++.+..
T Consensus 176 l~~q~~k~~~~qv~~in~qlE------rLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 176 LRDQVDKMVEQQVRVINSQLE------RLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=31.51 E-value=27 Score=31.60 Aligned_cols=20 Identities=40% Similarity=0.858 Sum_probs=0.0
Q ss_pred CCCccccccCCcCCCCCCceeecC
Q 016340 73 ELPTCPICLERLDPDTSGILSTIC 96 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C 96 (391)
|..+||||+|.=-.. +.+.|
T Consensus 1 ed~~CpICme~PHNA----VLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA----VLLLC 20 (162)
T ss_pred CCccCceeccCCCce----EEEEe
No 495
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=31.45 E-value=30 Score=29.29 Aligned_cols=22 Identities=23% Similarity=0.757 Sum_probs=0.0
Q ss_pred CCCcccccCcc-----cceeeeccccc
Q 016340 124 ERPTCSVCGTV-----ENLWVCLICGF 145 (391)
Q Consensus 124 ~~~~C~~C~~~-----~~lwiCL~CG~ 145 (391)
..|.|..|.+. .++|+|..||+
T Consensus 1 ~lp~CP~C~seytY~dg~~~iCpeC~~ 27 (109)
T TIGR00686 1 DLPPCPKCNSEYTYHDGTQLICPSCLY 27 (109)
T ss_pred CCCcCCcCCCcceEecCCeeECccccc
No 496
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.40 E-value=30 Score=38.69 Aligned_cols=38 Identities=26% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCcccchhhhccccccCCCcccc---ccCCCCCcccccCcc-cceeeecccc
Q 016340 96 CDHSFQCSCTAKWTVLSCQVCRFC---HQQDERPTCSVCGTV-ENLWVCLICG 144 (391)
Q Consensus 96 C~H~F~~~Cl~~w~~~~CP~Cr~~---~~~~~~~~C~~C~~~-~~lwiCL~CG 144 (391)
|||.+ .||.|-.. ++......|..|+.. .-...|..||
T Consensus 441 Cg~v~-----------~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 441 CGYIA-----------ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred CCCcc-----------cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCC
No 497
>PHA02148 hypothetical protein
Probab=31.36 E-value=81 Score=25.99 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhhccCCCCCcCCcEEe
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 368 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~~~~~~ei~~g~i~ 368 (391)
++=+.|.+....-+.+++++..+....++..+..|..+=|----.|-.|++|+.+= ++.+++|.++
T Consensus 37 E~FK~iE~RIA~D~~~L~~~A~~R~NEL~~HE~Air~~M~~HS~~M~~LS~~~~Li----SDS~K~~~~~ 102 (110)
T PHA02148 37 ELFKKIEERIAHDQTRLEELAKSRENELRRHEAAIRLAMDSHSIKMDDLSLQEALI----SDSLKGGKYL 102 (110)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHH
No 498
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=31.22 E-value=3.8e+02 Score=28.34 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 016340 241 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA-------KKAVADVNSKLIKNQEIMRK 313 (391)
Q Consensus 241 ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e-------~~~~~~ln~~L~~nq~~~~~ 313 (391)
|+..-||.|..|--.-=+..-.+.+...-..+.+. ++++|+..+.+|-+- .++..+=-.+++..++.|+.
T Consensus 445 LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~---~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrs 521 (583)
T KOG3809|consen 445 LVQKILETKKEIEDGGGQDQPEESDADKIMSAERE---KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRS 521 (583)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHH---HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHhhHHHHHHh
Q 016340 314 KFKEIEEREITSLRL-------RDATILDLEEQIRD 342 (391)
Q Consensus 314 ~~~~le~~~~~~~~~-------~~~~i~dL~EQ~rD 342 (391)
...+.+++++..... ...++++|+..|.|
T Consensus 522 e~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d 557 (583)
T KOG3809|consen 522 EQRQNEQELQNEQAATFGASEPLYNILANLQKEIND 557 (583)
T ss_pred HHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHH
No 499
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.21 E-value=4.3e+02 Score=24.44 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 255 SLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 328 (391)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~ 328 (391)
+.+.++..-....++..+++ .+...+.+++..+.+++..+.......+.|....+.....+.+.+.+....+..
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred HH--------HHHhhHHHHHHhHhHhhhhHHH
Q 016340 329 RD--------ATILDLEEQIRDLTVYIEAQKT 352 (391)
Q Consensus 329 ~~--------~~i~dL~EQ~rDlmf~le~q~k 352 (391)
-+ .++.++++++..|--.++.+..
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~ 112 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEA 112 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.20 E-value=7e+02 Score=29.37 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 245 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREIT 324 (391)
Q Consensus 245 qLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~ 324 (391)
||-++|.-+...|.++.. ....++ .++.++..|+.++.-++.++..++.=-.-+..........+.++.-+...
T Consensus 656 ~L~~~k~rl~eel~ei~~-~~~e~~-----~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~ 729 (1141)
T KOG0018|consen 656 QLKEKKERLLEELKEIQK-RRKEVS-----SVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISE 729 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q ss_pred HHHHHH---HHHhhHHHHHHhH
Q 016340 325 SLRLRD---ATILDLEEQIRDL 343 (391)
Q Consensus 325 ~~~~~~---~~i~dL~EQ~rDl 343 (391)
..+..+ ..+.+|+++++-+
T Consensus 730 i~r~l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 730 IKRKLQNREGEMKELEERMNKV 751 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!