Query 016340
Match_columns 391
No_of_seqs 267 out of 2042
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i50_A Ubiquitin carboxyl-term 99.8 3.6E-22 1.2E-26 171.3 -0.6 108 92-201 3-121 (126)
2 2g45_A Ubiquitin carboxyl-term 99.8 2E-21 6.9E-26 167.1 1.5 84 103-186 2-106 (129)
3 3c5k_A HD6, histone deacetylas 99.8 9.8E-20 3.4E-24 152.4 2.5 63 125-187 24-86 (109)
4 2uzg_A Ubiquitin carboxyl-term 99.7 1.7E-18 6E-23 142.0 1.9 62 124-185 24-88 (97)
5 2ida_A Hypothetical protein; z 99.7 2.4E-18 8E-23 141.8 1.2 75 113-187 5-87 (102)
6 3ihp_A Ubiquitin carboxyl-term 99.7 2.7E-18 9.2E-23 188.4 -2.6 104 80-185 162-286 (854)
7 3mhs_A Ubiquitin carboxyl-term 99.2 2.3E-12 7.8E-17 131.9 0.8 59 126-186 49-109 (476)
8 4ap4_A E3 ubiquitin ligase RNF 98.8 9.5E-10 3.2E-14 92.8 1.9 80 72-151 5-105 (133)
9 2djb_A Polycomb group ring fin 98.8 4.6E-09 1.6E-13 80.3 4.1 51 66-120 7-60 (72)
10 2ecj_A Tripartite motif-contai 98.8 5.7E-09 1.9E-13 75.9 4.3 45 68-116 9-58 (58)
11 1iym_A EL5; ring-H2 finger, ub 98.7 6E-09 2.1E-13 75.1 4.1 49 71-120 2-53 (55)
12 2yur_A Retinoblastoma-binding 98.7 5.7E-09 1.9E-13 80.4 4.0 49 68-120 9-62 (74)
13 2egp_A Tripartite motif-contai 98.7 4.7E-09 1.6E-13 81.1 3.4 50 67-120 5-63 (79)
14 2ecm_A Ring finger and CHY zin 98.7 6.1E-09 2.1E-13 75.0 3.8 48 73-120 4-53 (55)
15 2d8t_A Dactylidin, ring finger 98.7 6.8E-09 2.3E-13 79.1 4.0 47 70-120 11-59 (71)
16 2ect_A Ring finger protein 126 98.7 1.3E-08 4.4E-13 78.7 5.5 53 68-121 9-63 (78)
17 2ea6_A Ring finger protein 4; 98.7 4.6E-09 1.6E-13 78.9 2.6 54 67-120 8-66 (69)
18 3ztg_A E3 ubiquitin-protein li 98.7 5.2E-09 1.8E-13 83.5 3.0 49 68-120 7-60 (92)
19 4ayc_A E3 ubiquitin-protein li 98.7 2.7E-09 9.1E-14 92.1 1.3 44 73-120 52-97 (138)
20 2ecw_A Tripartite motif-contai 98.7 1.2E-08 4.3E-13 79.4 4.8 51 66-120 11-69 (85)
21 2ct2_A Tripartite motif protei 98.7 1.1E-08 3.8E-13 80.6 4.6 54 67-120 8-66 (88)
22 2ysl_A Tripartite motif-contai 98.7 1.5E-08 5E-13 77.2 4.6 48 69-120 15-67 (73)
23 2ysj_A Tripartite motif-contai 98.7 1.1E-08 3.9E-13 75.9 3.6 44 69-116 15-63 (63)
24 1g25_A CDK-activating kinase a 98.7 6.1E-09 2.1E-13 77.9 2.0 48 73-120 2-53 (65)
25 2csy_A Zinc finger protein 183 98.7 1.1E-08 3.9E-13 79.8 3.5 47 70-120 11-59 (81)
26 2ep4_A Ring finger protein 24; 98.7 1.4E-08 5E-13 77.6 4.1 50 70-120 11-62 (74)
27 2ecv_A Tripartite motif-contai 98.7 2.6E-08 8.9E-13 77.6 5.6 51 67-121 12-70 (85)
28 1t1h_A Gspef-atpub14, armadill 98.6 8.2E-09 2.8E-13 79.8 2.6 48 69-120 3-53 (78)
29 1x4j_A Ring finger protein 38; 98.6 9.9E-09 3.4E-13 79.0 2.6 49 71-120 20-70 (75)
30 2kiz_A E3 ubiquitin-protein li 98.6 3E-08 1E-12 74.8 5.0 50 70-120 10-61 (69)
31 1e4u_A Transcriptional repress 98.6 2.4E-08 8.3E-13 78.2 4.6 54 68-121 5-61 (78)
32 2ecy_A TNF receptor-associated 98.6 1.6E-08 5.4E-13 75.9 3.0 48 69-120 10-60 (66)
33 2l0b_A E3 ubiquitin-protein li 98.6 1.3E-08 4.3E-13 81.6 2.3 49 71-120 37-87 (91)
34 1bor_A Transcription factor PM 98.6 2.6E-08 8.8E-13 72.7 3.7 45 72-121 4-48 (56)
35 2ecl_A Ring-box protein 2; RNF 98.6 2.4E-08 8.1E-13 78.4 3.5 49 72-120 13-74 (81)
36 3lrq_A E3 ubiquitin-protein li 98.6 9.1E-09 3.1E-13 83.9 1.0 47 70-120 18-68 (100)
37 1v87_A Deltex protein 2; ring- 98.6 1.6E-08 5.3E-13 83.9 2.4 48 74-121 25-93 (114)
38 1jm7_B BARD1, BRCA1-associated 98.6 2.4E-08 8.3E-13 83.5 3.5 46 71-120 19-65 (117)
39 2ecn_A Ring finger protein 141 98.6 2.1E-08 7.2E-13 75.9 2.8 48 68-120 9-58 (70)
40 3l11_A E3 ubiquitin-protein li 98.6 1.6E-08 5.5E-13 84.1 2.3 47 70-120 11-60 (115)
41 3ng2_A RNF4, snurf, ring finge 98.6 1.2E-08 4E-13 77.2 1.2 50 71-120 7-61 (71)
42 3fl2_A E3 ubiquitin-protein li 98.6 1.5E-08 5.3E-13 85.5 2.0 46 72-121 50-98 (124)
43 2ckl_A Polycomb group ring fin 98.5 2.1E-08 7.2E-13 82.6 1.4 46 71-120 12-60 (108)
44 1chc_A Equine herpes virus-1 r 98.5 3.8E-08 1.3E-12 73.9 2.5 45 73-120 4-50 (68)
45 2y43_A E3 ubiquitin-protein li 98.5 2.3E-08 7.9E-13 81.0 1.1 45 72-120 20-67 (99)
46 2xeu_A Ring finger protein 4; 98.5 3.1E-08 1.1E-12 73.2 1.4 48 73-120 2-54 (64)
47 2kr4_A Ubiquitin conjugation f 98.4 8.8E-08 3E-12 76.0 3.4 48 69-120 9-58 (85)
48 1rmd_A RAG1; V(D)J recombinati 98.4 3.6E-08 1.2E-12 82.1 0.5 48 70-121 19-69 (116)
49 1jm7_A BRCA1, breast cancer ty 98.4 8.2E-08 2.8E-12 79.0 2.4 45 72-120 19-68 (112)
50 1z6u_A NP95-like ring finger p 98.4 6.9E-08 2.4E-12 84.6 2.0 46 72-121 76-124 (150)
51 3dpl_R Ring-box protein 1; ubi 98.4 1.4E-07 4.7E-12 78.2 3.6 48 73-120 36-99 (106)
52 2kre_A Ubiquitin conjugation f 98.4 1.1E-07 3.8E-12 77.8 2.9 48 69-120 24-73 (100)
53 2ckl_B Ubiquitin ligase protei 98.4 4.3E-08 1.5E-12 86.7 0.3 47 70-120 50-100 (165)
54 1wgm_A Ubiquitin conjugation f 98.4 1.8E-07 6.1E-12 76.3 3.9 47 70-120 18-67 (98)
55 4ic3_A E3 ubiquitin-protein li 98.4 1.2E-07 4E-12 73.1 2.3 43 72-120 22-65 (74)
56 3hct_A TNF receptor-associated 98.4 1.2E-07 3.9E-12 79.5 2.3 47 70-120 14-63 (118)
57 2d8s_A Cellular modulator of i 98.3 8.5E-07 2.9E-11 69.7 5.9 49 71-121 12-69 (80)
58 2c2l_A CHIP, carboxy terminus 98.3 2.4E-07 8.2E-12 87.4 3.2 49 68-120 202-253 (281)
59 3knv_A TNF receptor-associated 98.3 9E-08 3.1E-12 83.1 -0.0 45 71-119 28-75 (141)
60 2yu4_A E3 SUMO-protein ligase 98.3 2.7E-07 9.1E-12 74.5 2.3 45 70-118 3-58 (94)
61 4a0k_B E3 ubiquitin-protein li 98.1 3.4E-07 1.2E-11 77.2 0.4 48 73-120 47-110 (117)
62 3hcs_A TNF receptor-associated 98.0 1.1E-06 3.9E-11 77.8 2.0 47 70-120 14-63 (170)
63 2ecg_A Baculoviral IAP repeat- 98.0 1.7E-06 5.7E-11 66.7 2.6 42 73-120 24-66 (75)
64 2f42_A STIP1 homology and U-bo 98.0 1.3E-06 4.3E-11 78.9 2.1 49 68-120 100-151 (179)
65 2y1n_A E3 ubiquitin-protein li 98.0 2E-06 6.8E-11 86.2 3.1 42 75-120 333-377 (389)
66 4ap4_A E3 ubiquitin ligase RNF 97.9 1.6E-06 5.6E-11 72.6 0.7 49 72-120 70-123 (133)
67 3htk_C E3 SUMO-protein ligase 97.9 3.6E-06 1.2E-10 80.0 2.9 49 68-120 175-230 (267)
68 2yho_A E3 ubiquitin-protein li 97.9 4.5E-06 1.5E-10 65.2 3.0 43 72-120 16-59 (79)
69 3t6p_A Baculoviral IAP repeat- 97.9 4.3E-06 1.5E-10 82.8 3.5 43 72-120 293-336 (345)
70 2vje_A E3 ubiquitin-protein li 97.8 3.8E-06 1.3E-10 62.9 0.7 44 73-120 7-55 (64)
71 2ea5_A Cell growth regulator w 97.7 3E-05 1E-09 58.8 4.7 43 72-120 13-56 (68)
72 2vje_B MDM4 protein; proto-onc 97.7 7.5E-06 2.6E-10 61.0 0.8 43 74-120 7-54 (63)
73 1wim_A KIAA0161 protein; ring 97.6 1.1E-05 3.8E-10 64.5 1.3 46 72-119 3-61 (94)
74 2ct0_A Non-SMC element 1 homol 97.6 3.9E-05 1.3E-09 59.4 3.1 45 73-120 14-62 (74)
75 3k1l_B Fancl; UBC, ring, RWD, 97.2 9.6E-05 3.3E-09 72.7 2.3 47 73-119 307-370 (381)
76 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00016 5.4E-09 53.5 1.8 44 73-120 5-57 (60)
77 2bay_A PRE-mRNA splicing facto 96.9 0.00023 7.8E-09 52.8 1.2 41 75-119 4-47 (61)
78 3vk6_A E3 ubiquitin-protein li 96.2 0.0018 6E-08 52.7 1.9 65 76-151 3-70 (101)
79 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.01 3.5E-07 47.5 3.7 76 73-152 2-86 (101)
80 3ghg_A Fibrinogen alpha chain; 94.1 0.65 2.2E-05 47.6 13.5 97 228-327 63-159 (562)
81 2dfs_A Myosin-5A; myosin-V, in 94.0 0.63 2.2E-05 52.3 14.7 67 284-350 983-1049(1080)
82 3ol1_A Vimentin; structural ge 93.3 1.2 4.1E-05 37.0 11.8 33 310-342 87-119 (119)
83 3nw0_A Non-structural maintena 92.9 0.051 1.7E-06 50.8 3.0 45 73-120 179-227 (238)
84 2v71_A Nuclear distribution pr 92.1 6.3 0.00022 35.4 15.5 15 279-293 57-71 (189)
85 3hnw_A Uncharacterized protein 91.3 4 0.00014 34.8 12.8 63 280-346 70-132 (138)
86 3na7_A HP0958; flagellar bioge 91.3 9.1 0.00031 35.5 16.7 37 304-340 123-159 (256)
87 3bas_A Myosin heavy chain, str 91.0 3.7 0.00013 32.2 11.4 67 277-347 20-86 (89)
88 2ocy_A RAB guanine nucleotide 90.2 8.7 0.0003 33.3 14.0 24 324-347 122-145 (154)
89 2w83_C C-JUN-amino-terminal ki 89.7 2.7 9.2E-05 32.2 9.0 66 229-322 9-74 (77)
90 3mq9_A Bone marrow stromal ant 89.3 5.6 0.00019 39.8 14.1 66 280-349 399-468 (471)
91 3tnu_B Keratin, type II cytosk 89.2 3 0.0001 34.9 10.1 55 252-308 12-66 (129)
92 3tnu_A Keratin, type I cytoske 88.3 2.7 9.2E-05 35.3 9.3 27 280-306 40-66 (131)
93 3ghg_A Fibrinogen alpha chain; 86.7 6.8 0.00023 40.2 12.5 26 231-256 51-76 (562)
94 2fxo_A Myosin heavy chain, car 86.6 13 0.00044 31.0 16.1 17 329-345 109-125 (129)
95 2dfs_A Myosin-5A; myosin-V, in 84.8 11 0.00037 42.4 14.3 15 309-323 1019-1033(1080)
96 3oja_B Anopheles plasmodium-re 84.0 14 0.00046 37.9 13.9 12 332-343 559-570 (597)
97 3na7_A HP0958; flagellar bioge 82.5 25 0.00086 32.4 13.8 36 306-341 132-167 (256)
98 2kwj_A Zinc finger protein DPF 81.1 1.7 5.8E-05 35.6 4.5 60 75-143 2-79 (114)
99 4h22_A Leucine-rich repeat fli 80.9 16 0.00055 29.5 10.0 60 278-341 23-82 (103)
100 3s4r_A Vimentin; alpha-helix, 80.7 14 0.00046 29.2 9.6 35 279-313 10-44 (93)
101 2zqm_A Prefoldin beta subunit 78.9 23 0.00078 28.2 11.1 42 299-344 70-111 (117)
102 3v43_A Histone acetyltransfera 78.8 2.5 8.7E-05 34.4 4.9 63 72-143 3-83 (112)
103 1gs9_A Apolipoprotein E, APOE4 78.8 6.4 0.00022 34.4 7.8 100 234-341 56-160 (165)
104 3oja_A Leucine-rich immune mol 78.2 20 0.00068 35.8 12.4 17 328-344 460-476 (487)
105 1nfn_A Apolipoprotein E3; lipi 77.8 11 0.00037 33.6 9.2 27 233-259 55-81 (191)
106 1fxk_A Prefoldin; archaeal pro 77.8 23 0.00079 27.8 10.3 41 299-343 65-105 (107)
107 2ysm_A Myeloid/lymphoid or mix 77.4 4 0.00014 32.9 5.7 45 72-117 5-55 (111)
108 1deq_A Fibrinogen (alpha chain 76.5 62 0.0021 31.9 14.8 47 276-322 111-157 (390)
109 2eqb_B RAB guanine nucleotide 74.6 31 0.0011 27.6 12.3 22 244-265 15-36 (97)
110 3mq9_A Bone marrow stromal ant 74.6 70 0.0024 31.6 16.0 64 275-342 401-468 (471)
111 2v66_B Nuclear distribution pr 74.6 17 0.00057 29.8 8.6 13 292-304 42-54 (111)
112 2jee_A YIIU; FTSZ, septum, coi 74.5 28 0.00094 26.9 10.0 23 294-316 50-72 (81)
113 2b9c_A Striated-muscle alpha t 74.1 41 0.0014 28.7 11.7 95 246-344 43-142 (147)
114 4dci_A Uncharacterized protein 74.0 20 0.00068 30.9 9.4 38 328-368 81-118 (150)
115 2e7s_A RAB guanine nucleotide 73.2 17 0.00058 30.8 8.5 21 326-346 112-132 (135)
116 1wil_A KIAA1045 protein; ring 72.5 5.7 0.0002 31.1 5.0 37 70-108 11-47 (89)
117 1go4_E MAD1 (mitotic arrest de 68.5 36 0.0012 27.3 9.1 28 278-305 12-39 (100)
118 3hnw_A Uncharacterized protein 66.2 59 0.002 27.4 10.7 6 256-261 40-45 (138)
119 1ik9_A DNA repair protein XRCC 64.4 46 0.0016 30.2 10.2 17 278-294 153-169 (213)
120 1f5n_A Interferon-induced guan 64.3 91 0.0031 32.5 13.8 14 331-344 567-580 (592)
121 3a7p_A Autophagy protein 16; c 63.4 70 0.0024 27.5 10.5 44 278-321 75-118 (152)
122 2q6q_A Spindle POLE BODY compo 63.0 45 0.0015 24.9 9.2 59 280-342 5-63 (74)
123 3cvf_A Homer-3, homer protein 62.4 37 0.0013 26.1 7.7 18 244-261 2-19 (79)
124 2a01_A Apolipoprotein A-I; fou 61.7 96 0.0033 28.3 12.4 34 227-260 93-126 (243)
125 2cq3_A RNA-binding protein 9; 61.5 9.2 0.00031 29.4 4.4 38 2-40 44-81 (103)
126 4gne_A Histone-lysine N-methyl 60.8 17 0.00058 29.4 5.9 64 70-150 11-82 (107)
127 1x79_B RAB GTPase binding effe 60.0 70 0.0024 26.1 11.9 72 281-355 16-91 (112)
128 2cqi_A Nucleolysin TIAR; RNA r 59.9 9.6 0.00033 29.3 4.2 38 2-40 44-81 (103)
129 3nmd_A CGMP dependent protein 59.5 37 0.0013 25.6 7.1 16 326-341 49-64 (72)
130 3cvf_A Homer-3, homer protein 59.2 58 0.002 25.0 9.0 8 329-336 57-64 (79)
131 2ko5_A Ring finger protein Z; 58.7 7.8 0.00027 30.9 3.4 48 66-119 20-70 (99)
132 4etp_A Kinesin-like protein KA 58.7 15 0.00052 36.5 6.4 35 280-314 5-39 (403)
133 1uii_A Geminin; human, DNA rep 58.6 50 0.0017 25.6 7.8 29 279-307 47-75 (83)
134 2dgv_A HnRNP M, heterogeneous 58.3 11 0.00038 28.1 4.3 39 2-41 37-75 (92)
135 2lri_C Autoimmune regulator; Z 57.2 12 0.00042 27.5 4.2 43 72-118 10-58 (66)
136 3mq7_A Bone marrow stromal ant 57.1 81 0.0028 25.9 12.4 17 331-347 92-108 (121)
137 3vkg_A Dynein heavy chain, cyt 57.1 2.1E+02 0.0073 36.0 16.9 17 17-33 1334-1350(3245)
138 3nmd_A CGMP dependent protein 57.0 33 0.0011 25.9 6.5 19 326-344 42-60 (72)
139 2v71_A Nuclear distribution pr 57.0 1.1E+02 0.0036 27.3 17.5 22 290-311 93-114 (189)
140 3swf_A CGMP-gated cation chann 56.6 56 0.0019 24.7 7.7 37 306-342 14-50 (74)
141 2pe8_A Splicing factor 45; RRM 56.2 14 0.00047 29.3 4.6 40 2-41 42-83 (105)
142 1deq_A Fibrinogen (alpha chain 55.1 80 0.0027 31.1 10.6 75 242-316 54-130 (390)
143 2fy1_A RNA-binding motif prote 54.7 15 0.0005 29.3 4.6 40 2-41 36-75 (116)
144 1wt6_A Myotonin-protein kinase 54.4 72 0.0025 24.5 10.0 12 331-342 59-70 (81)
145 2jee_A YIIU; FTSZ, septum, coi 54.2 73 0.0025 24.5 11.1 15 293-307 28-42 (81)
146 1wle_A Seryl-tRNA synthetase; 54.1 70 0.0024 32.7 10.6 22 326-347 132-153 (501)
147 1ic2_A Tropomyosin alpha chain 54.0 69 0.0024 24.2 10.9 9 311-319 46-54 (81)
148 3lss_A Seryl-tRNA synthetase; 53.9 59 0.002 33.1 9.9 23 325-347 119-141 (484)
149 2x1f_A MRNA 3'-END-processing 53.9 13 0.00044 28.2 4.0 40 2-41 31-71 (96)
150 3bs9_A Nucleolysin TIA-1 isofo 53.7 14 0.00049 27.1 4.2 39 2-40 35-74 (87)
151 1i84_S Smooth muscle myosin he 53.2 81 0.0028 35.5 11.9 15 79-93 522-538 (1184)
152 2d9p_A Polyadenylate-binding p 53.0 16 0.00053 28.0 4.4 38 2-40 44-81 (103)
153 3v4m_A Splicing factor U2AF 65 53.0 11 0.00039 29.7 3.6 39 2-40 44-85 (105)
154 2do4_A Squamous cell carcinoma 52.8 15 0.0005 28.0 4.2 39 2-40 46-84 (100)
155 1jmt_A Splicing factor U2AF 35 52.3 16 0.00054 28.8 4.4 40 2-41 56-95 (104)
156 3qne_A Seryl-tRNA synthetase, 52.2 36 0.0012 34.7 8.0 21 327-347 88-108 (485)
157 1ytz_T Troponin T; muscle, THI 52.2 34 0.0012 27.8 6.3 16 328-343 74-89 (107)
158 3trt_A Vimentin; cytoskeleton, 51.9 70 0.0024 23.7 10.0 34 229-262 9-42 (77)
159 3md1_A Nuclear and cytoplasmic 51.6 17 0.00058 26.4 4.2 39 2-40 30-69 (83)
160 2dnz_A Probable RNA-binding pr 51.5 20 0.00068 26.8 4.7 40 2-41 34-74 (95)
161 1x5t_A Splicing factor 3B subu 51.5 15 0.00051 27.6 4.0 37 4-40 37-74 (96)
162 2ywk_A Putative RNA-binding pr 51.3 15 0.00053 27.5 4.1 39 2-40 45-83 (95)
163 3swy_A Cyclic nucleotide-gated 51.1 57 0.002 22.4 6.9 9 331-339 37-45 (46)
164 3cve_A Homer protein homolog 1 51.1 76 0.0026 23.9 9.5 11 327-337 49-59 (72)
165 2do0_A HnRNP M, heterogeneous 51.0 16 0.00054 28.5 4.2 39 2-40 44-82 (114)
166 2fxo_A Myosin heavy chain, car 50.9 1E+02 0.0035 25.3 12.8 52 297-348 67-121 (129)
167 1j1d_B Troponin T, TNT; THIN f 50.8 35 0.0012 27.6 6.2 34 310-343 53-89 (106)
168 2err_A Ataxin-2-binding protei 50.7 13 0.00043 29.2 3.6 38 2-40 58-95 (109)
169 2cs3_A Protein C14ORF4, MY039 50.7 11 0.00038 29.2 2.9 33 72-108 13-49 (93)
170 3trt_A Vimentin; cytoskeleton, 50.6 73 0.0025 23.5 10.4 24 242-265 7-30 (77)
171 2wvr_A Geminin; DNA replicatio 49.7 87 0.003 28.2 9.1 35 278-312 115-149 (209)
172 2dnh_A Bruno-like 5, RNA bindi 49.6 19 0.00064 27.6 4.4 40 2-41 44-83 (105)
173 3vkg_A Dynein heavy chain, cyt 49.3 2.1E+02 0.0073 36.0 15.2 17 331-347 2028-2044(3245)
174 2b9c_A Striated-muscle alpha t 49.0 1.2E+02 0.0042 25.7 13.8 20 330-349 100-119 (147)
175 1j1e_C Troponin I, TNI; THIN f 48.7 1.4E+02 0.0049 26.3 10.3 36 309-344 68-106 (180)
176 1x5o_A RNA binding motif, sing 48.5 19 0.00065 28.1 4.3 40 2-41 54-93 (114)
177 1x4e_A RNA binding motif, sing 48.4 14 0.00048 27.1 3.3 39 2-40 34-73 (85)
178 1x62_A C-terminal LIM domain p 48.4 24 0.00082 26.0 4.6 39 70-118 11-49 (79)
179 3o36_A Transcription intermedi 48.1 17 0.0006 31.7 4.4 43 74-120 4-52 (184)
180 4fxv_A ELAV-like protein 1; RN 47.9 22 0.00076 27.4 4.6 39 2-40 48-87 (99)
181 1whw_A Hypothetical protein ri 47.8 19 0.00063 27.3 4.0 39 2-40 37-76 (99)
182 2xzl_A ATP-dependent helicase 47.5 4.7 0.00016 43.7 0.6 78 125-202 11-101 (802)
183 3ulh_A THO complex subunit 4; 47.2 19 0.00066 27.6 4.1 39 2-40 58-96 (107)
184 2div_A TRNA selenocysteine ass 47.0 19 0.00065 27.2 4.0 40 2-41 39-79 (99)
185 2krb_A Eukaryotic translation 46.8 13 0.00046 27.2 3.0 38 3-41 37-74 (81)
186 1f5n_A Interferon-induced guan 46.6 2.7E+02 0.0092 28.9 15.0 20 322-341 565-584 (592)
187 1wt6_A Myotonin-protein kinase 46.6 97 0.0033 23.8 9.3 14 298-311 51-64 (81)
188 2cph_A RNA binding motif prote 46.5 22 0.00076 27.2 4.4 40 2-41 44-86 (107)
189 3lqh_A Histone-lysine N-methyl 46.3 13 0.00045 33.0 3.3 32 76-107 4-38 (183)
190 2cqc_A Arginine/serine-rich sp 46.2 20 0.00067 26.8 3.9 39 2-40 44-83 (95)
191 2dhg_A TRNA selenocysteine ass 46.2 24 0.00083 26.9 4.5 40 2-41 39-79 (104)
192 2fc9_A NCL protein; structure 46.0 18 0.00061 27.5 3.7 38 3-40 42-79 (101)
193 2cqb_A Peptidyl-prolyl CIS-tra 45.9 18 0.00061 27.5 3.7 39 2-40 41-80 (102)
194 3iv1_A Tumor susceptibility ge 45.9 98 0.0034 23.6 11.3 27 293-319 26-52 (78)
195 1wg2_A Zinc finger (AN1-like) 45.9 16 0.00054 27.1 3.0 24 125-149 15-40 (64)
196 2w83_C C-JUN-amino-terminal ki 45.9 97 0.0033 23.6 9.5 48 294-341 25-75 (77)
197 1gd2_E Transcription factor PA 45.8 81 0.0028 23.5 7.1 10 247-256 18-27 (70)
198 3swk_A Vimentin; cytoskeleton, 45.3 99 0.0034 23.8 7.9 35 228-267 6-40 (86)
199 2cpf_A RNA binding motif prote 44.5 13 0.00043 28.2 2.5 39 2-40 34-76 (98)
200 1x5s_A Cold-inducible RNA-bind 44.5 26 0.0009 26.6 4.5 40 2-41 41-81 (102)
201 2kt5_A RNA and export factor-b 44.5 24 0.00081 28.1 4.4 39 2-40 64-102 (124)
202 3lay_A Zinc resistance-associa 44.4 1.3E+02 0.0046 26.2 9.5 27 327-355 116-142 (175)
203 2csz_A Synaptotagmin-like prot 44.4 7.8 0.00027 29.7 1.2 28 111-145 43-72 (76)
204 3mdf_A Peptidyl-prolyl CIS-tra 44.3 16 0.00056 26.6 3.1 38 3-40 37-75 (85)
205 2dgo_A Cytotoxic granule-assoc 44.1 23 0.00077 27.7 4.1 39 2-40 44-83 (115)
206 3s9g_A Protein hexim1; cyclin 44.0 1.2E+02 0.0042 24.2 9.9 27 287-313 67-93 (104)
207 2cq0_A Eukaryotic translation 43.8 23 0.0008 27.0 4.1 39 2-40 44-83 (103)
208 2la6_A RNA-binding protein FUS 43.8 33 0.0011 25.9 4.9 39 3-41 51-90 (99)
209 1t6f_A Geminin; coiled-coil, c 43.6 33 0.0011 22.3 3.9 19 326-344 16-34 (37)
210 2cpe_A RNA-binding protein EWS 43.5 24 0.00082 27.4 4.2 38 3-40 53-91 (113)
211 3r2p_A Apolipoprotein A-I; amp 43.4 1.6E+02 0.0055 25.4 12.2 9 174-182 14-22 (185)
212 1m1j_A Fibrinogen alpha subuni 43.4 2.7E+02 0.0094 28.1 15.4 49 278-326 111-159 (491)
213 1lwu_C Fibrinogen gamma chain; 43.3 53 0.0018 31.7 7.3 17 331-347 40-56 (323)
214 1gk4_A Vimentin; intermediate 43.3 1E+02 0.0035 23.4 7.6 49 302-350 4-52 (84)
215 4f25_A Polyadenylate-binding p 42.9 17 0.00059 28.7 3.2 38 2-40 34-71 (115)
216 3n7n_E Monopolin complex subun 42.9 20 0.00067 28.4 3.3 16 243-258 13-28 (95)
217 4fla_A Regulation of nuclear P 42.9 1.3E+02 0.0045 25.7 9.0 64 280-344 81-144 (152)
218 2jrp_A Putative cytoplasmic pr 42.8 8.6 0.00029 29.8 1.3 55 75-144 3-58 (81)
219 3s84_A Apolipoprotein A-IV; fo 42.6 2.1E+02 0.0073 26.6 15.7 11 236-246 36-46 (273)
220 2wjy_A Regulator of nonsense t 42.5 6.6 0.00023 42.6 0.8 78 125-202 6-96 (800)
221 3iv1_A Tumor susceptibility ge 42.3 1.1E+02 0.0038 23.3 10.0 22 296-317 43-64 (78)
222 1x4w_A Hypothetical protein FL 42.3 12 0.00041 27.9 2.0 26 124-150 14-44 (67)
223 1x8y_A Lamin A/C; structural p 42.2 1.1E+02 0.0039 23.3 7.8 20 245-264 7-26 (86)
224 2pms_C Pneumococcal surface pr 42.2 52 0.0018 27.4 6.0 11 284-294 50-60 (125)
225 2zet_C Melanophilin; complex, 41.9 6.6 0.00022 34.0 0.5 32 73-104 67-99 (153)
226 1m1j_B Fibrinogen beta chain; 41.8 1.9E+02 0.0066 29.2 11.4 20 328-347 179-198 (464)
227 2jrs_A RNA-binding protein 39; 41.7 26 0.00089 27.4 4.1 40 2-41 55-95 (108)
228 1wfh_A Zinc finger (AN1-like) 41.7 19 0.00065 26.6 2.9 24 125-149 15-40 (64)
229 2cpz_A CUG triplet repeat RNA- 41.3 27 0.00093 27.2 4.2 39 2-40 54-93 (115)
230 3a2a_A Voltage-gated hydrogen 41.2 73 0.0025 22.7 5.7 41 294-345 13-53 (58)
231 2a20_A Regulating synaptic mem 41.1 9 0.00031 27.9 1.1 35 72-107 7-42 (62)
232 2dgw_A Probable RNA-binding pr 41.1 24 0.00084 26.2 3.7 38 2-40 38-75 (91)
233 1we9_A PHD finger family prote 40.6 12 0.00039 27.0 1.6 33 72-107 4-39 (64)
234 1p1t_A Cleavage stimulation fa 40.4 26 0.00087 26.7 3.8 40 2-41 37-77 (104)
235 3md3_A Nuclear and cytoplasmic 40.3 29 0.00099 28.2 4.4 39 2-40 29-67 (166)
236 3i00_A HIP-I, huntingtin-inter 40.2 1.5E+02 0.0053 24.3 10.7 36 308-343 42-80 (120)
237 2e5h_A Zinc finger CCHC-type a 39.5 23 0.00079 26.4 3.3 39 2-40 45-84 (94)
238 3r2p_A Apolipoprotein A-I; amp 39.5 1.8E+02 0.0062 25.1 9.7 21 298-318 103-123 (185)
239 3ihp_A Ubiquitin carboxyl-term 39.5 5.6 0.00019 43.5 -0.3 40 127-170 48-91 (854)
240 2kxn_B Transformer-2 protein h 39.3 36 0.0012 27.6 4.7 40 2-41 75-115 (129)
241 2zxx_A Geminin; coiled-coil, c 39.0 1.3E+02 0.0044 23.0 7.7 24 281-304 37-60 (79)
242 2dgt_A RNA-binding protein 30; 38.7 25 0.00087 26.2 3.5 25 16-40 46-70 (92)
243 3mq7_A Bone marrow stromal ant 38.6 1.6E+02 0.0056 24.1 13.0 23 330-352 77-99 (121)
244 1zbd_B Rabphilin-3A; G protein 38.6 9.1 0.00031 32.3 0.9 30 73-102 54-84 (134)
245 1wfp_A Zinc finger (AN1-like) 38.6 22 0.00074 27.0 2.9 25 125-150 25-51 (74)
246 1tu3_F RAB GTPase binding effe 38.5 49 0.0017 25.1 4.8 27 278-305 19-46 (79)
247 1gd2_E Transcription factor PA 38.5 1.1E+02 0.0039 22.7 6.9 15 278-292 29-43 (70)
248 3lqv_A PRE-mRNA branch site pr 38.4 29 0.001 27.0 3.9 37 2-40 37-73 (115)
249 2l7b_A Apolipoprotein E, APO-E 38.3 1.6E+02 0.0054 28.0 9.7 15 234-248 64-78 (307)
250 2ek1_A RNA-binding protein 12; 38.3 33 0.0011 25.5 4.1 38 3-40 45-83 (95)
251 4a8x_A RNA-binding protein wit 38.2 19 0.00066 26.4 2.6 38 3-40 34-73 (88)
252 1mm2_A MI2-beta; PHD, zinc fin 38.1 33 0.0011 24.5 3.8 31 73-107 8-38 (61)
253 3ue2_A Poly(U)-binding-splicin 38.1 15 0.00053 29.8 2.2 40 2-41 54-98 (118)
254 2l43_A N-teminal domain from h 38.0 18 0.00062 28.1 2.5 38 68-106 19-58 (88)
255 1oo0_B CG8781-PA, drosophila Y 38.0 31 0.0011 26.6 4.0 39 2-40 55-94 (110)
256 3u06_A Protein claret segregat 37.9 49 0.0017 32.9 6.3 8 332-339 53-60 (412)
257 1uw4_A UPF3X; nonsense mediate 37.9 16 0.00056 28.7 2.2 38 17-58 48-85 (91)
258 2dq0_A Seryl-tRNA synthetase; 37.8 1.7E+02 0.0057 29.4 10.3 22 326-347 85-106 (455)
259 2fc8_A NCL protein; structure 37.8 34 0.0012 25.9 4.2 39 2-40 41-80 (102)
260 2hvz_A Splicing factor, argini 37.7 23 0.00079 26.9 3.1 35 2-40 29-63 (101)
261 1vmg_A Hypothetical protein SS 37.5 1.3E+02 0.0045 23.4 7.6 17 333-349 60-76 (95)
262 3u5n_A E3 ubiquitin-protein li 37.5 18 0.00062 32.3 2.8 41 74-120 7-55 (207)
263 2z5i_A TM, general control pro 37.4 96 0.0033 21.7 6.0 30 277-306 11-40 (52)
264 2cpi_A CCR4-NOT transcription 37.2 37 0.0013 26.4 4.4 38 3-40 48-89 (111)
265 2dgx_A KIAA0430 protein; RRM d 37.2 26 0.00089 26.5 3.3 37 2-40 42-78 (96)
266 2dnp_A RNA-binding protein 14; 37.0 24 0.00082 26.2 3.1 25 16-40 45-69 (90)
267 3p5t_L Cleavage and polyadenyl 37.0 37 0.0013 25.2 4.2 40 2-41 32-72 (90)
268 2ku7_A MLL1 PHD3-CYP33 RRM chi 36.2 25 0.00084 28.3 3.2 39 2-40 92-131 (140)
269 1iml_A CRIP, cysteine rich int 36.0 12 0.00042 27.4 1.2 36 75-119 1-36 (76)
270 2e6r_A Jumonji/ARID domain-con 35.8 17 0.00059 28.4 2.1 36 69-105 11-46 (92)
271 1x8y_A Lamin A/C; structural p 35.5 58 0.002 25.0 5.1 16 308-323 30-45 (86)
272 2e44_A Insulin-like growth fac 35.4 33 0.0011 25.6 3.7 33 5-40 48-80 (96)
273 1c1g_A Tropomyosin; contractIl 35.1 2.2E+02 0.0074 24.5 18.2 14 228-241 5-18 (284)
274 2khc_A Testis-specific RNP-typ 35.0 28 0.00097 27.2 3.3 39 2-40 69-108 (118)
275 1f62_A Transcription factor WS 34.9 30 0.001 23.5 3.0 30 76-106 2-31 (51)
276 2dnm_A SRP46 splicing factor; 34.9 30 0.001 26.4 3.4 38 3-40 43-81 (103)
277 2j76_E EIF-4B, EIF4B, eukaryot 34.9 34 0.0012 26.0 3.7 39 2-41 47-87 (100)
278 1wfk_A Zinc finger, FYVE domai 34.9 25 0.00085 27.3 2.8 40 68-107 3-42 (88)
279 2dj7_A Actin-binding LIM prote 34.8 40 0.0014 25.1 4.0 45 65-118 6-50 (80)
280 3bas_A Myosin heavy chain, str 34.4 1.6E+02 0.0053 22.7 10.6 16 281-296 38-53 (89)
281 4fla_A Regulation of nuclear P 34.1 2.2E+02 0.0075 24.2 12.3 29 279-307 83-111 (152)
282 2p22_A Suppressor protein STP2 33.9 1.6E+02 0.0056 25.7 8.3 92 280-373 14-112 (174)
283 3s8s_A Histone-lysine N-methyl 33.8 42 0.0014 26.4 4.2 39 2-40 35-74 (110)
284 2dgs_A DAZ-associated protein 33.6 50 0.0017 24.8 4.5 38 2-40 39-77 (99)
285 1uii_A Geminin; human, DNA rep 33.6 1.6E+02 0.0056 22.7 7.2 10 333-342 72-81 (83)
286 3ns6_A Eukaryotic translation 33.1 35 0.0012 26.1 3.5 40 2-41 41-81 (100)
287 1x5u_A Splicing factor 3B subu 32.7 39 0.0013 25.7 3.7 40 2-41 44-84 (105)
288 1p27_B RNA-binding protein 8A; 32.6 54 0.0019 24.9 4.6 39 2-40 52-91 (106)
289 2jmo_A Parkin; IBR, E3 ligase, 32.3 27 0.00094 26.4 2.7 20 95-114 55-74 (80)
290 2zet_C Melanophilin; complex, 32.3 9.3 0.00032 33.0 -0.1 41 98-145 68-116 (153)
291 3nmr_A Cugbp ELAV-like family 32.3 36 0.0012 27.9 3.7 39 2-40 32-73 (175)
292 1cxz_B Protein (PKN); protein- 32.2 1.8E+02 0.006 22.6 7.3 14 331-344 70-83 (86)
293 3v43_A Histone acetyltransfera 32.2 31 0.0011 27.7 3.2 12 95-106 82-93 (112)
294 2p2u_A HOST-nuclease inhibitor 32.1 2.5E+02 0.0084 24.2 9.2 52 313-368 41-94 (171)
295 2cqp_A RNA-binding protein 12; 31.9 46 0.0016 24.9 4.0 38 3-40 45-83 (98)
296 1x4g_A Nucleolysin TIAR; struc 31.9 37 0.0013 26.2 3.5 33 3-40 55-87 (109)
297 1x64_A Alpha-actinin-2 associa 31.3 59 0.002 24.4 4.5 39 70-118 21-59 (89)
298 2eqb_B RAB guanine nucleotide 30.9 2E+02 0.0068 22.8 9.6 14 330-343 82-95 (97)
299 2co8_A NEDD9 interacting prote 30.7 57 0.002 24.2 4.3 41 69-118 10-50 (82)
300 1lwu_C Fibrinogen gamma chain; 30.6 1.3E+02 0.0046 28.9 7.8 10 363-372 86-95 (323)
301 3mtu_A Tropomyosin alpha-1 cha 30.5 1.7E+02 0.0058 21.9 8.1 50 292-345 16-65 (75)
302 1fxl_A Paraneoplastic encephal 30.5 50 0.0017 26.7 4.3 39 2-40 31-70 (167)
303 3ex7_B RNA-binding protein 8A; 30.4 45 0.0015 26.3 3.9 39 2-40 51-90 (126)
304 1nfn_A Apolipoprotein E3; lipi 30.2 84 0.0029 27.7 5.9 14 303-316 125-138 (191)
305 2lv9_A Histone-lysine N-methyl 30.1 29 0.001 27.3 2.6 29 73-106 27-58 (98)
306 1ses_A Seryl-tRNA synthetase; 30.1 2E+02 0.007 28.3 9.4 21 327-347 81-101 (421)
307 2zxx_A Geminin; coiled-coil, c 29.9 1.9E+02 0.0063 22.1 9.2 19 301-319 36-54 (79)
308 3etw_A Adhesin A; antiparallel 29.8 2.3E+02 0.0079 23.2 11.8 27 312-338 70-96 (119)
309 2kn4_A Immunoglobulin G-bindin 29.7 51 0.0017 27.1 4.2 36 1-37 1-36 (158)
310 4f02_A Polyadenylate-binding p 29.7 33 0.0011 29.9 3.2 38 2-40 132-169 (213)
311 3mov_A Lamin-B1; LMNB1, B-type 29.7 59 0.002 25.6 4.3 25 303-327 34-58 (95)
312 2nrj_A HBL B protein; enteroto 29.6 3.8E+02 0.013 25.7 11.0 92 249-348 102-193 (346)
313 3mtu_E Head morphogenesis prot 29.6 1.9E+02 0.0063 22.0 7.5 19 304-322 35-53 (77)
314 1a92_A Delta antigen; leucine 29.4 80 0.0027 21.9 4.2 11 312-322 13-23 (50)
315 1yuz_A Nigerythrin; rubrythrin 29.2 14 0.00049 33.1 0.6 9 137-145 186-194 (202)
316 1tz0_A Hypothetical protein; s 29.1 38 0.0013 27.0 3.2 32 2-33 42-75 (114)
317 2l08_A Regulator of nonsense t 29.0 27 0.00091 27.9 2.1 38 17-58 56-93 (97)
318 1wle_A Seryl-tRNA synthetase; 28.9 2.7E+02 0.0091 28.3 10.2 21 327-347 126-146 (501)
319 3ucg_A Polyadenylate-binding p 28.8 55 0.0019 23.8 3.9 38 2-40 35-73 (89)
320 1zxa_A CGMP-dependent protein 28.7 82 0.0028 23.4 4.6 16 326-341 34-49 (67)
321 2l5u_A Chromodomain-helicase-D 28.6 33 0.0011 24.5 2.4 31 73-107 10-40 (61)
322 1x4a_A Splicing factor, argini 28.5 46 0.0016 25.5 3.5 36 3-40 52-87 (109)
323 2ke4_A CDC42-interacting prote 28.5 2.2E+02 0.0074 22.5 9.1 25 275-299 19-43 (98)
324 1wff_A Riken cDNA 2810002D23 p 28.5 28 0.00097 27.1 2.1 25 125-150 25-52 (85)
325 2dgu_A Heterogeneous nuclear r 28.4 36 0.0012 26.0 2.8 25 16-40 47-71 (103)
326 2jwn_A Embryonic polyadenylate 28.3 49 0.0017 26.0 3.7 38 2-40 65-103 (124)
327 1u6f_A Tcubp1, RNA-binding pro 28.2 45 0.0015 26.8 3.6 39 2-40 71-110 (139)
328 3lo3_A Uncharacterized conserv 28.1 36 0.0012 26.5 2.7 22 12-33 51-72 (94)
329 3s4r_A Vimentin; alpha-helix, 28.0 2.1E+02 0.0072 22.2 9.3 10 281-290 59-68 (93)
330 1xke_A RAN-binding protein 2; 27.9 39 0.0013 28.0 3.1 24 12-35 92-115 (130)
331 2ku3_A Bromodomain-containing 27.8 32 0.0011 25.6 2.3 37 70-106 12-49 (71)
332 2cpj_A Non-POU domain-containi 27.8 52 0.0018 24.8 3.6 28 14-41 51-78 (99)
333 3s6e_A RNA-binding protein 39; 27.7 40 0.0014 27.1 3.1 37 2-41 46-82 (114)
334 3hhm_B NISH2 P85alpha; PI3KCA, 27.7 4.3E+02 0.015 25.7 11.7 10 363-372 321-330 (373)
335 2dgp_A Bruno-like 4, RNA bindi 27.7 64 0.0022 24.5 4.2 38 2-39 42-80 (106)
336 3efg_A Protein SLYX homolog; x 27.6 2E+02 0.0068 21.7 7.3 18 330-347 41-58 (78)
337 2oqb_A Histone-arginine methyl 27.5 41 0.0014 27.7 3.0 21 14-34 82-102 (117)
338 2ki2_A SS-DNA binding protein 27.4 62 0.0021 23.7 4.0 39 2-41 30-69 (90)
339 1iuj_A Hypothetical protein TT 27.4 48 0.0016 25.2 3.4 32 2-33 37-68 (106)
340 1m1j_B Fibrinogen beta chain; 27.3 4.9E+02 0.017 26.2 16.8 21 330-350 174-194 (464)
341 2yql_A PHD finger protein 21A; 27.3 29 0.00098 24.3 1.8 32 71-106 6-37 (56)
342 2mss_A Protein (musashi1); RNA 27.2 60 0.0021 22.8 3.7 39 2-41 28-67 (75)
343 2lf0_A Uncharacterized protein 27.2 1.2E+02 0.0041 25.0 5.7 19 278-296 10-28 (123)
344 2w6a_A ARF GTPase-activating p 27.1 1.8E+02 0.0061 21.0 7.7 22 282-303 38-59 (63)
345 2efr_A General control protein 27.0 3E+02 0.01 23.6 16.9 9 335-343 127-135 (155)
346 2vpb_A Hpygo1, pygopus homolog 27.0 17 0.00059 26.6 0.6 34 74-107 8-42 (65)
347 3cve_A Homer protein homolog 1 26.9 2E+02 0.0068 21.5 10.8 12 331-342 56-67 (72)
348 3o0z_A RHO-associated protein 26.6 3.2E+02 0.011 23.8 17.1 19 331-349 125-147 (168)
349 3tnu_A Keratin, type I cytoske 26.5 2.6E+02 0.009 22.8 11.9 51 277-327 44-98 (131)
350 2ct7_A Ring finger protein 31; 26.5 27 0.00091 26.8 1.7 32 77-108 28-61 (86)
351 2j9u_B VPS36, vacuolar protein 26.3 24 0.00081 26.9 1.3 11 110-120 17-27 (76)
352 2qfj_A FBP-interacting repress 26.3 68 0.0023 27.3 4.6 39 2-40 154-193 (216)
353 3o0z_A RHO-associated protein 26.2 3.2E+02 0.011 23.7 16.8 18 280-297 92-109 (168)
354 1wlq_A Geminin; coiled-coil; 2 26.2 2.2E+02 0.0077 21.9 8.5 27 280-306 40-66 (83)
355 1wen_A Inhibitor of growth fam 26.2 98 0.0034 22.8 4.8 29 72-106 14-48 (71)
356 2d74_B Translation initiation 26.1 29 0.00099 29.8 2.0 20 140-159 128-147 (148)
357 3dxb_A Thioredoxin N-terminall 26.1 53 0.0018 28.8 3.9 40 2-41 158-202 (222)
358 6rxn_A Rubredoxin; electron tr 26.0 20 0.0007 24.6 0.8 7 138-144 31-37 (46)
359 2k16_A Transcription initiatio 25.9 32 0.0011 25.4 2.0 31 73-107 17-50 (75)
360 1jnm_A Proto-oncogene C-JUN; B 25.8 1.2E+02 0.004 21.6 5.0 13 332-344 44-56 (62)
361 2nlw_A Eukaryotic translation 25.8 45 0.0016 25.6 3.0 37 3-40 51-87 (105)
362 2fiu_A Conserved hypothetical 25.7 55 0.0019 25.7 3.5 22 12-33 52-73 (99)
363 2lw1_A ABC transporter ATP-bin 25.6 95 0.0033 23.8 4.8 18 331-348 63-80 (89)
364 2ro1_A Transcription intermedi 25.6 42 0.0014 29.6 3.0 40 75-118 3-48 (189)
365 2i2y_A Fusion protein consists 25.5 65 0.0022 26.3 4.1 35 2-40 102-136 (150)
366 2cq4_A RNA binding motif prote 25.4 57 0.0019 25.2 3.6 38 2-40 54-92 (114)
367 1x4h_A RNA-binding protein 28; 25.3 68 0.0023 24.5 4.0 39 2-40 44-89 (111)
368 1fxk_C Protein (prefoldin); ar 25.1 2.7E+02 0.0092 22.4 13.8 15 330-344 115-129 (133)
369 1wi8_A EIF-4B, eukaryotic tran 25.1 52 0.0018 25.0 3.2 38 2-40 43-82 (104)
370 2v4h_A NF-kappa-B essential mo 25.1 2.7E+02 0.0094 22.5 11.7 16 330-345 89-104 (110)
371 2xb1_A Pygopus homolog 2, B-ce 25.1 20 0.0007 28.7 0.8 28 75-105 4-35 (105)
372 4h22_A Leucine-rich repeat fli 25.0 2.7E+02 0.0091 22.3 9.3 9 312-320 36-44 (103)
373 2kpi_A Uncharacterized protein 24.9 31 0.0011 24.6 1.6 18 69-86 5-22 (56)
374 3s9g_A Protein hexim1; cyclin 24.8 2.6E+02 0.009 22.2 9.9 44 278-321 37-80 (104)
375 2lkz_A RNA-binding protein 5; 24.7 64 0.0022 24.8 3.6 37 2-38 40-77 (95)
376 3s84_A Apolipoprotein A-IV; fo 24.6 4.2E+02 0.014 24.5 18.7 21 228-248 50-70 (273)
377 1x79_B RAB GTPase binding effe 24.6 2.8E+02 0.0097 22.5 9.5 8 332-339 46-53 (112)
378 1j1d_C Troponin I, TNI; THIN f 24.6 3.1E+02 0.011 22.9 11.1 36 309-344 68-106 (133)
379 1weo_A Cellulose synthase, cat 24.5 95 0.0033 24.4 4.5 48 73-120 15-68 (93)
380 2kn4_A Immunoglobulin G-bindin 24.3 65 0.0022 26.4 3.9 39 2-40 99-138 (158)
381 2qfj_A FBP-interacting repress 24.3 70 0.0024 27.2 4.2 40 2-41 57-97 (216)
382 2dh8_A DAZ-associated protein 24.2 65 0.0022 24.4 3.6 39 2-41 45-84 (105)
383 1nj3_A NPL4; NZF domain, rubre 24.2 39 0.0014 20.7 1.9 22 112-134 8-29 (31)
384 3f6n_A Virion-associated prote 24.1 2.7E+02 0.0093 23.0 7.3 15 332-346 49-63 (129)
385 2ffw_A Midline-1; B-BOX, ring 24.1 29 0.00099 26.1 1.5 39 125-167 30-75 (78)
386 1ytz_I Troponin I; muscle, THI 24.0 3.3E+02 0.011 24.0 8.5 36 309-344 65-103 (182)
387 2akl_A PHNA-like protein PA012 23.9 35 0.0012 28.8 1.9 12 135-146 42-53 (138)
388 1m1j_C Fibrinogen gamma chain; 23.7 5.4E+02 0.018 25.4 14.9 19 329-347 117-135 (409)
389 2f3j_A RNA and export factor b 23.6 68 0.0023 27.5 4.0 40 2-41 117-156 (177)
390 3smz_A Protein raver-1, ribonu 23.6 69 0.0024 28.9 4.3 39 2-40 214-252 (284)
391 2w6a_A ARF GTPase-activating p 23.6 2.1E+02 0.0072 20.7 6.7 25 297-321 32-56 (63)
392 2k48_A Nucleoprotein; viral pr 23.6 2.9E+02 0.0098 22.2 10.8 18 328-345 86-103 (107)
393 2oie_A RS21-C6; helix, hydrola 23.4 1.4E+02 0.0047 23.4 5.6 18 332-349 73-90 (111)
394 3qfl_A MLA10; coiled-coil, (CC 23.2 2.6E+02 0.0089 22.1 7.2 13 333-345 57-69 (115)
395 2v66_B Nuclear distribution pr 23.2 3E+02 0.01 22.3 13.9 11 296-306 60-70 (111)
396 2la4_A Nuclear and cytoplasmic 23.2 74 0.0025 23.9 3.7 28 13-40 62-89 (101)
397 3ni0_A Bone marrow stromal ant 23.2 2.8E+02 0.0096 21.9 11.1 15 330-344 73-87 (99)
398 3n7c_A ABR034WP; nuclear pore 23.2 47 0.0016 27.6 2.7 21 15-35 96-116 (130)
399 2oto_A M protein; helical coil 23.1 3.3E+02 0.011 22.7 12.5 47 297-343 91-140 (155)
400 3a9j_C Mitogen-activated prote 23.1 41 0.0014 21.1 1.8 22 112-134 10-31 (34)
401 1h2v_Z 20 kDa nuclear CAP bind 23.0 75 0.0026 26.1 4.0 39 2-40 68-107 (156)
402 3mov_A Lamin-B1; LMNB1, B-type 22.9 2.5E+02 0.0085 21.9 6.8 34 278-311 37-71 (95)
403 1fp0_A KAP-1 corepressor; PHD 22.8 85 0.0029 24.4 3.9 43 72-118 23-71 (88)
404 1joc_A EEA1, early endosomal a 22.6 43 0.0015 27.6 2.3 36 73-108 68-103 (125)
405 2wt7_B Transcription factor MA 22.4 2E+02 0.0067 22.5 6.0 31 284-314 54-84 (90)
406 3tnu_B Keratin, type II cytosk 22.3 3.1E+02 0.011 22.2 12.1 13 311-323 80-92 (129)
407 2avr_X Adhesion A; antiparalle 22.2 3.3E+02 0.011 22.4 14.0 22 227-250 7-28 (119)
408 1b7f_A Protein (SXL-lethal pro 22.1 61 0.0021 26.3 3.2 39 2-40 32-71 (168)
409 1wd2_A Ariadne-1 protein homol 22.0 36 0.0012 24.5 1.5 34 75-109 7-45 (60)
410 3m62_A Ubiquitin conjugation f 22.0 29 0.001 38.4 1.5 44 71-118 888-934 (968)
411 4emc_A Monopolin complex subun 22.0 4.2E+02 0.014 23.5 9.6 12 304-315 46-57 (190)
412 1sqe_A Hypothetical protein PG 21.7 60 0.002 25.1 3.0 32 2-33 37-70 (109)
413 3q0x_A Centriole protein; cent 21.7 4.6E+02 0.016 23.8 9.8 11 48-58 24-34 (228)
414 1l8d_A DNA double-strand break 21.7 2.9E+02 0.0098 21.5 11.0 16 330-345 91-106 (112)
415 2jun_A Midline-1; B-BOX, TRIM, 21.6 34 0.0012 26.3 1.5 29 125-153 3-34 (101)
416 3m91_A Proteasome-associated A 21.4 2.1E+02 0.0073 19.9 7.2 14 330-343 36-49 (51)
417 1x68_A FHL5 protein; four-and- 21.4 67 0.0023 23.2 3.0 38 74-119 5-44 (76)
418 3etw_A Adhesin A; antiparallel 21.2 3.4E+02 0.012 22.2 13.7 28 227-256 7-34 (119)
419 1vfy_A Phosphatidylinositol-3- 21.2 60 0.002 23.9 2.7 35 73-107 10-44 (73)
420 3lay_A Zinc resistance-associa 21.1 3.9E+02 0.013 23.2 8.4 13 165-177 7-19 (175)
421 2zdo_A Heme-degrading monooxyg 21.1 84 0.0029 24.3 3.7 32 2-33 39-72 (109)
422 3lcn_C MRNA transport factor G 21.1 93 0.0032 19.0 2.9 17 240-256 9-25 (29)
423 2hzc_A Splicing factor U2AF 65 20.9 62 0.0021 23.4 2.8 26 14-40 53-78 (87)
424 3hx9_A Protein RV3592; DI-heme 20.8 51 0.0017 27.0 2.4 32 2-33 38-69 (124)
425 2dq0_A Seryl-tRNA synthetase; 20.8 3.6E+02 0.012 26.9 9.2 21 327-347 79-99 (455)
426 1xwh_A Autoimmune regulator; P 20.8 34 0.0012 24.8 1.2 30 73-106 7-36 (66)
427 1m1j_A Fibrinogen alpha subuni 20.8 6.6E+02 0.023 25.3 11.4 108 242-353 52-161 (491)
428 1rk8_A CG8781-PA, CG8781-PA pr 20.6 92 0.0032 25.9 4.2 39 2-40 101-140 (165)
429 2lem_A Apolipoprotein A-I; lip 20.6 4.4E+02 0.015 23.2 15.9 108 227-338 59-182 (216)
430 1z60_A TFIIH basal transcripti 20.4 24 0.00081 25.6 0.2 41 75-116 16-58 (59)
431 3m9b_A Proteasome-associated A 20.2 1.5E+02 0.0051 27.6 5.6 12 332-343 83-94 (251)
432 3beg_B Splicing factor, argini 20.2 88 0.003 24.4 3.7 28 16-43 53-80 (115)
433 3n9u_C Cleavage and polyadenyl 20.1 1.1E+02 0.0037 25.6 4.5 39 2-40 86-125 (156)
434 2cqd_A RNA-binding region cont 20.1 62 0.0021 25.1 2.8 38 2-40 46-84 (116)
435 3sjb_C Golgi to ER traffic pro 20.0 1.6E+02 0.0056 23.1 5.0 38 279-319 50-87 (93)
436 1wig_A KIAA1808 protein; LIM d 20.0 72 0.0025 23.0 2.9 36 74-119 5-40 (73)
No 1
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.82 E-value=3.6e-22 Score=171.30 Aligned_cols=108 Identities=28% Similarity=0.520 Sum_probs=89.4
Q ss_pred eeecCCCcccchhhhccc-------cccCCCccccccCCCCCcccccCcccceeeecccccccccCC-CCcccccccCC-
Q 016340 92 LSTICDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY-KEGHAVRHWKD- 162 (391)
Q Consensus 92 it~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vgCgr~-~~~HA~~H~~~- 162 (391)
+...|.|.++..++..|. ...|+.|+... ......+.+|....++|+||+||+|||||+ .++||..||++
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~-~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~ 81 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDN-KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTP 81 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCT-TSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCccccccc-cccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCc
Confidence 466799999988886663 25799998753 222344668888999999999999999998 58999999999
Q ss_pred --CCCcccccCCCceeEecCCchhhhhhhcccccCCeeccc
Q 016340 163 --TQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMN 201 (391)
Q Consensus 163 --t~H~~~~~l~t~~vwcy~cd~~Vhrl~~~k~dgklve~~ 201 (391)
++|+++++++|++||||.||+||+ ..+.+.++++|++.
T Consensus 82 ~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v~~~ 121 (126)
T 2i50_A 82 RSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVVDYV 121 (126)
T ss_dssp CSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHHHHH
T ss_pred CCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHHHHH
Confidence 899999999999999999999998 56678888888764
No 2
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.81 E-value=2e-21 Score=167.12 Aligned_cols=84 Identities=30% Similarity=0.486 Sum_probs=67.9
Q ss_pred hhhhccccccCCCcccccc----------CCCCCcccccCcccceeeecccccccccCCC------CcccccccCCCCCc
Q 016340 103 SCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHW 166 (391)
Q Consensus 103 ~Cl~~w~~~~CP~Cr~~~~----------~~~~~~C~~C~~~~~lwiCL~CG~vgCgr~~------~~HA~~H~~~t~H~ 166 (391)
.|+..|.+..||+|+++.. ++..+.|.+|+...++|+||+||+||||||. ++||+.||.+++|+
T Consensus 2 ~~~~~W~~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 2 QEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp ---------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred hHHHhhcCCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 5888999888999998742 1245689999999999999999999999997 89999999999999
Q ss_pred ccccCCC-----ceeEecCCchhhh
Q 016340 167 YSLDLRT-----QQIWDYVGDNYVH 186 (391)
Q Consensus 167 ~~~~l~t-----~~vwcy~cd~~Vh 186 (391)
+++++.| ++||||.||+||+
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEE
T ss_pred EEEECCCCCCCCCeEEECCCCCEeE
Confidence 9999999 7999999999995
No 3
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.76 E-value=9.8e-20 Score=152.38 Aligned_cols=63 Identities=38% Similarity=0.809 Sum_probs=60.8
Q ss_pred CCcccccCcccceeeecccccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhhhh
Q 016340 125 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 187 (391)
Q Consensus 125 ~~~C~~C~~~~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~Vhr 187 (391)
...|.+|+...++|+||+||++||||+.++||..||++++|++++++++.+||||.||.||++
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCC
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEec
Confidence 467999999999999999999999999999999999999999999999999999999999985
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.70 E-value=1.7e-18 Score=142.02 Aligned_cols=62 Identities=35% Similarity=0.816 Sum_probs=58.9
Q ss_pred CCCcccccC-cccceeeecc--cccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhh
Q 016340 124 ERPTCSVCG-TVENLWVCLI--CGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 185 (391)
Q Consensus 124 ~~~~C~~C~-~~~~lwiCL~--CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~V 185 (391)
....|.+|+ ..+++|+||+ ||++||||+..+||..||++++|+++++++|.+||||.||+||
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 457899999 6779999999 9999999999999999999999999999999999999999998
No 5
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.69 E-value=2.4e-18 Score=141.83 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=61.4
Q ss_pred CCCcccccc-CCCCCcccccCccc----ceeeecccccccccCC-CCcccccccCCCCCcccc--cCCCceeEecCCchh
Q 016340 113 CQVCRFCHQ-QDERPTCSVCGTVE----NLWVCLICGFVGCGRY-KEGHAVRHWKDTQHWYSL--DLRTQQIWDYVGDNY 184 (391)
Q Consensus 113 CP~Cr~~~~-~~~~~~C~~C~~~~----~lwiCL~CG~vgCgr~-~~~HA~~H~~~t~H~~~~--~l~t~~vwcy~cd~~ 184 (391)
||.-..+.. ++....|.+|+..+ +||+||+||+|||||+ .++||+.||++|+|++++ +.++.+||||.||+|
T Consensus 5 C~Hl~~~~~~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~ 84 (102)
T 2ida_A 5 CRHVAGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVM 84 (102)
T ss_dssp CGGGGGCCCCCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEE
T ss_pred CcCccccccCCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcE
Confidence 444443332 23467899999886 8999999999999999 899999999999999664 455799999999999
Q ss_pred hhh
Q 016340 185 VHR 187 (391)
Q Consensus 185 Vhr 187 (391)
|+.
T Consensus 85 V~~ 87 (102)
T 2ida_A 85 FDL 87 (102)
T ss_dssp EEC
T ss_pred EEC
Confidence 964
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.7e-18 Score=188.40 Aligned_cols=104 Identities=28% Similarity=0.459 Sum_probs=73.1
Q ss_pred ccCCcCCCCCCceeecCCCcccchhhhccccccCCCcccccc----------CCCCCcccccCcccceeeeccccccccc
Q 016340 80 CLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCLICGFVGCG 149 (391)
Q Consensus 80 Cle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~----------~~~~~~C~~C~~~~~lwiCL~CG~vgCg 149 (391)
|++++...+.||+. +.+.++..|+..|....||+|+++.. ++..+.|.+|+...++|+||+||++|||
T Consensus 162 ~~~~~~~~~~~i~~--~~~~~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~ 239 (854)
T 3ihp_A 162 VRDRVTSAVEALLS--ADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCG 239 (854)
T ss_dssp HHHHHHHHHHHHTC------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEEC
T ss_pred hHHHHHHHHHHHHh--cCCHHHHHHHHhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCcccc
Confidence 44444433444443 67889999999999888999998731 1334689999999999999999999999
Q ss_pred CCC------CcccccccCCCCCcccccCCC-----ceeEecCCchhh
Q 016340 150 RYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 185 (391)
Q Consensus 150 r~~------~~HA~~H~~~t~H~~~~~l~t-----~~vwcy~cd~~V 185 (391)
|+. ++||..||.+++|++++++.| .+||||.||.||
T Consensus 240 r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v 286 (854)
T 3ihp_A 240 RRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 286 (854)
T ss_dssp CBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEC
T ss_pred ccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCee
Confidence 986 789999999999999999999 999999999999
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.19 E-value=2.3e-12 Score=131.93 Aligned_cols=59 Identities=24% Similarity=0.676 Sum_probs=55.8
Q ss_pred CcccccCcc--cceeeecccccccccCCCCcccccccCCCCCcccccCCCceeEecCCchhhh
Q 016340 126 PTCSVCGTV--ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 186 (391)
Q Consensus 126 ~~C~~C~~~--~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~t~~vwcy~cd~~Vh 186 (391)
+.|..|... .++|+||+||++|||+ .+||..|+.+++|++++++++++||||.||+||.
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~ 109 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIG 109 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEEC
T ss_pred CCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcc
Confidence 569999987 7999999999999997 8999999999999999999999999999999994
No 8
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=9.5e-10 Score=92.79 Aligned_cols=80 Identities=28% Similarity=0.544 Sum_probs=58.8
Q ss_pred CCCCccccccCCcCCC---CCCceeecCCCcccchhhhccc--cccCCCccccccC---------CCCCcccccCccc--
Q 016340 72 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQQ---------DERPTCSVCGTVE-- 135 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~---~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~~---------~~~~~C~~C~~~~-- 135 (391)
.+..+||||++.|..+ ...+++++|||+||..|+..|. ...||+||..... +....|..|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 3578999999999654 2334788999999999999994 6789999987532 2456788886532
Q ss_pred -----ceeeecccccccccCC
Q 016340 136 -----NLWVCLICGFVGCGRY 151 (391)
Q Consensus 136 -----~lwiCL~CG~vgCgr~ 151 (391)
...+.+.||++.|..+
T Consensus 85 ~~~~~~~~~~~~CgH~fc~~C 105 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCSQC 105 (133)
T ss_dssp HHHTTCCEEEETTSBEEEHHH
T ss_pred ccccCcceEeCCCCChhhHHH
Confidence 2336778888877543
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=4.6e-09 Score=80.30 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=42.3
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCceee-cCCCcccchhhhccc--cccCCCccccc
Q 016340 66 TPPAGFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 66 ~~~~~~~E~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.....+.+..+||||++.|.++ +++ +|+|.||..|+..|. ...||+||...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDA----TTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSC----EECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCc----CEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3445667788999999999775 554 899999999999996 67899999865
No 10
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.7e-09 Score=75.88 Aligned_cols=45 Identities=29% Similarity=0.752 Sum_probs=37.5
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-----cccCCCc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVC 116 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~C 116 (391)
...+.+...||||++.+..+ +.++|+|.||..|+..|. ...||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34566788999999999876 567899999999999992 4679987
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.74 E-value=6e-09 Score=75.10 Aligned_cols=49 Identities=24% Similarity=0.681 Sum_probs=39.1
Q ss_pred CCCCCccccccCCcCCCCCCceeec-CCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~-C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+.+...|+||++.|.... .+..++ |+|.||..|+..|. ...||+||...
T Consensus 2 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCC-ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 456789999999997632 345665 99999999999995 67899999743
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.73 E-value=5.7e-09 Score=80.35 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=41.2
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeec-CCCcccchhhhccc--c--ccCCCccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--V--LSCQVCRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~-C~H~F~~~Cl~~w~--~--~~CP~Cr~~~ 120 (391)
...+.+..+||||++.|..+ ++++ |||+||..|+..|. . ..||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 44566788999999999876 6788 99999999999985 2 5899999854
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.73 E-value=4.7e-09 Score=81.12 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=41.2
Q ss_pred CCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---------cccCCCccccc
Q 016340 67 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---------VLSCQVCRFCH 120 (391)
Q Consensus 67 ~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---------~~~CP~Cr~~~ 120 (391)
....+.+..+||||++.|..+ ++++|||+||..|+..|. ...||+||...
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hHhhcccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 345667889999999999876 567999999999999984 34799999865
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.73 E-value=6.1e-09 Score=74.97 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=39.7
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
....||||++.|......++.++|+|.||..|+..|. ...||+||...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4678999999996544445788999999999999995 57899999754
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=6.8e-09 Score=79.12 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=39.9
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
...+..+|+||++.+..+ +.++|+|.||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 345678999999999775 677999999999999985 57899999865
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.72 E-value=1.3e-08 Score=78.72 Aligned_cols=53 Identities=28% Similarity=0.570 Sum_probs=42.3
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCcccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 121 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~ 121 (391)
.....+...|+||++.|..+. .+..++|+|.||..|+..|. ...||+||....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 345566889999999997643 34567899999999999995 678999998653
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.6e-09 Score=78.88 Aligned_cols=54 Identities=26% Similarity=0.456 Sum_probs=42.5
Q ss_pred CCCCCCCCCccccccCCcCCC---CCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 67 PPAGFTELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 67 ~~~~~~E~~tCpiCle~ld~~---~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
....+.+...||||++.+..+ ...++.++|||.||..|+..|. ...||+||...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 344566788999999998543 2334678999999999999995 67899999754
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.70 E-value=5.2e-09 Score=83.52 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=41.3
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeec-CCCcccchhhhccc----cccCCCccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~-C~H~F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
...+.+..+||||++.|..+ ++++ |||+||..|+..|. ...||+||...
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 44567789999999999876 7888 99999999999984 35899999864
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.70 E-value=2.7e-09 Score=92.07 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=38.0
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+..+||||++.|..+ ++++|||+||..|+..|. ...||+||...
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 456899999999776 788999999999999985 57899999754
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=1.2e-08 Score=79.39 Aligned_cols=51 Identities=37% Similarity=0.591 Sum_probs=42.2
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--------cccCCCccccc
Q 016340 66 TPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 120 (391)
Q Consensus 66 ~~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--------~~~CP~Cr~~~ 120 (391)
.....+.+...||||++.+..+ +.++|+|+||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred HHHHhCccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 4445677889999999999876 678899999999999973 45799999865
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=80.56 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=43.1
Q ss_pred CCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-----cccCCCccccc
Q 016340 67 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 120 (391)
Q Consensus 67 ~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 120 (391)
....+.+...||||++.|.......+.++|||.||..|+..|. ...||+||...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 3446678899999999997633224778999999999999995 26899999865
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.5e-08 Score=77.23 Aligned_cols=48 Identities=27% Similarity=0.678 Sum_probs=40.3
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-----cccCCCccccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 120 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 120 (391)
..+.+...||||++.+..+ ++++|||.||..|+..|. ...||+||...
T Consensus 15 ~~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HhCccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3556788999999999875 677999999999999985 34799999865
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=75.86 Aligned_cols=44 Identities=30% Similarity=0.750 Sum_probs=37.1
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc-----cccCCCc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVC 116 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-----~~~CP~C 116 (391)
..+.+..+||||++.+..+ ++++|||+||..|+..|. ...||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3566788999999999876 677999999999999985 2479987
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=6.1e-09 Score=77.92 Aligned_cols=48 Identities=19% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCccccccC-CcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 73 ELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle-~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
+..+||||++ .+..+....++++|||+||..|+..|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 4678999999 886654444567999999999999983 46799999865
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=79.80 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=40.0
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
...+...||||++.|..+ ++++|||.||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred cCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 445678999999999775 678999999999999995 57899999864
No 26
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=77.64 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=40.8
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+.+...|+||++.|..+. .+..++|+|.||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCCCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 4556789999999997643 34566899999999999995 56899999865
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.6e-08 Score=77.55 Aligned_cols=51 Identities=43% Similarity=0.666 Sum_probs=41.8
Q ss_pred CCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--------cccCCCcccccc
Q 016340 67 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCHQ 121 (391)
Q Consensus 67 ~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--------~~~CP~Cr~~~~ 121 (391)
....+.+...||||++.+..+ +.++|||.||..|+..|. ...||+||....
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHHHccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 334567789999999999776 567999999999999983 468999998653
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.65 E-value=8.2e-09 Score=79.85 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=40.7
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
..+.+...||||++.|.++ ++++|||+||..|+..|. ...||+||...
T Consensus 3 ~~~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 3456788999999999876 678999999999999984 56799999754
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=9.9e-09 Score=78.95 Aligned_cols=49 Identities=24% Similarity=0.666 Sum_probs=40.7
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+...|+||++.|..+ ..+..++|+|.||..|+..|. ...||+||...
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 34678999999999764 345678899999999999995 67899999865
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=3e-08 Score=74.81 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
...+...|+||++.|... ..++.++|+|.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred cCCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 344577999999998643 235678999999999999995 67899999865
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.62 E-value=2.4e-08 Score=78.20 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=39.4
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhc-cc--cccCCCcccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT--VLSCQVCRFCHQ 121 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~-w~--~~~CP~Cr~~~~ 121 (391)
...+.+..+||||++.++.+...+...+|||+||..|+.. |. ...||.||....
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3456788999999998843211122235999999999988 43 578999998763
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.6e-08 Score=75.88 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=39.9
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
..+.+..+||||++.+..+ +.++|||.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CSCCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred hcCCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3456788999999999776 457999999999999985 46899999854
No 33
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.60 E-value=1.3e-08 Score=81.65 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=40.2
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+...|+||++.|... ..+..++|+|.||..|+..|. ...||+||...
T Consensus 37 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 34677899999998653 345678899999999999995 67899999865
No 34
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=2.6e-08 Score=72.74 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCcccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ 121 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 121 (391)
.+..+|+||++.|..+ ++++|||+||..|+..| ...||+||....
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~-~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS-GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS-SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC-CCCCCcCCcEee
Confidence 3578999999999876 67889999999999886 568999998653
No 35
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.4e-08 Score=78.44 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=37.1
Q ss_pred CCCCccccccCCcCCC----------CCCceee-cCCCcccchhhhccc--cccCCCccccc
Q 016340 72 TELPTCPICLERLDPD----------TSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~----------~~g~it~-~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+..+|+||++.|+++ ...++.+ +|+|.||..||..|. ...||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 3677899999988542 2223444 599999999999995 67899999854
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.58 E-value=9.1e-09 Score=83.93 Aligned_cols=47 Identities=28% Similarity=0.584 Sum_probs=40.0
Q ss_pred CCCCCCccccccCCcCCCCCCcee-ecCCCcccchhhhccc--c-ccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT--V-LSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it-~~C~H~F~~~Cl~~w~--~-~~CP~Cr~~~ 120 (391)
.+.+..+||||++.|..+ ++ ++|||+||..||..|. . ..||+||...
T Consensus 18 ~l~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cCCCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 345788999999999876 66 8999999999999985 3 6899999865
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.58 E-value=1.6e-08 Score=83.92 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=37.6
Q ss_pred CCccccccCCcCCCC--------------CCceeecCCCcccchhhhccc-------cccCCCcccccc
Q 016340 74 LPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT-------VLSCQVCRFCHQ 121 (391)
Q Consensus 74 ~~tCpiCle~ld~~~--------------~g~it~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~ 121 (391)
...||||++.|..+. ..+..++|+|.||..||..|. ...||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999985532 122367899999999999996 458999998763
No 38
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=2.4e-08 Score=83.54 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=40.1
Q ss_pred CCCCCccccccCCcCCCCCCceee-cCCCcccchhhhccccccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
+.+..+||||++.|..+ +++ +|||+||..|+..|....||+||...
T Consensus 19 l~~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HHHTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred chhCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 45688999999999776 566 89999999999999778899999865
No 39
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.1e-08 Score=75.89 Aligned_cols=48 Identities=31% Similarity=0.701 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
...+.+...||||++.+.. +.++|+|.||..|+..|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred hhcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 3455678899999999876 577899999999999995 57899999865
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.57 E-value=1.6e-08 Score=84.13 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=39.7
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.+.+..+||||++.|..+ ++++|||+||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 344578999999999876 778999999999999986 45899999864
No 41
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.56 E-value=1.2e-08 Score=77.24 Aligned_cols=50 Identities=28% Similarity=0.517 Sum_probs=40.1
Q ss_pred CCCCCccccccCCcCCC---CCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~---~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+...||||++.+..+ ...++.++|||.||..|+..|. ...||+||...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 34678999999998553 1223678899999999999995 67899999865
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.56 E-value=1.5e-08 Score=85.46 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=39.1
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 121 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 121 (391)
.+..+||||++.|..+ ++++|||+||..|+..|. ...||+||....
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 4567999999999876 778999999999999984 348999998663
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.51 E-value=2.1e-08 Score=82.58 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=38.9
Q ss_pred CCCCCccccccCCcCCCCCCceee-cCCCcccchhhhccc--cccCCCccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+.+..+||||++.|..+ +++ +|||+||..|+..|. ...||+||...
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA----TTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp HGGGTBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCcCCCccCChHHhCc----CEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 45688999999999775 565 999999999999985 57899998754
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.50 E-value=3.8e-08 Score=73.93 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=37.8
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+...||||++.+..+ .+.++|||.||..|+..|. ...||+||...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456899999999653 2678899999999999995 67899999754
No 45
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.49 E-value=2.3e-08 Score=80.98 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=38.1
Q ss_pred CCCCccccccCCcCCCCCCceee-cCCCcccchhhhccc--cccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+..+||||++.|..+ +++ +|||+||..|+..|. ...||+||...
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA----MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccCChhhCCc----CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 4578999999999775 555 899999999999985 56899999865
No 46
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.48 E-value=3.1e-08 Score=73.15 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=38.8
Q ss_pred CCCccccccCCcCCC---CCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~---~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+...||||++.+..+ ...++.++|||.||..|+..|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 457899999998643 2334678999999999999995 67899999865
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.44 E-value=8.8e-08 Score=75.98 Aligned_cols=48 Identities=6% Similarity=-0.098 Sum_probs=40.8
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+-+...||||++.|.+| ++++|||+||..||..|. ...||+|+...
T Consensus 9 ~~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred hcCchheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 3456788999999999877 788899999999999984 67899998754
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.42 E-value=3.6e-08 Score=82.14 Aligned_cols=48 Identities=27% Similarity=0.518 Sum_probs=40.1
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 121 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 121 (391)
.+.+..+||||++.+.++ ++++|||+||..|+..|. ...||+||....
T Consensus 19 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 19 HFVKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHHHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hccCCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 344678999999999776 668999999999999985 468999998653
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=8.2e-08 Score=78.99 Aligned_cols=45 Identities=36% Similarity=0.690 Sum_probs=37.3
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhcccc-----ccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~ 120 (391)
.+...||||++.+..+ ++++|||+||..|+..|.. ..||+||...
T Consensus 19 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 19 QKILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 3467999999999776 5679999999999999852 3799998754
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.40 E-value=6.9e-08 Score=84.63 Aligned_cols=46 Identities=26% Similarity=0.448 Sum_probs=38.9
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 121 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 121 (391)
.+..+||||++.|..+ ++++|||+||..|+..|. ...||+||....
T Consensus 76 ~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 3567999999999776 678999999999999985 348999998653
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.40 E-value=1.4e-07 Score=78.21 Aligned_cols=48 Identities=19% Similarity=0.519 Sum_probs=38.6
Q ss_pred CCCccccccCCcCCCC--------------CCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~--------------~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+..+|+||++.|+.+- ..++.++|+|.||..||..|. ...||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 5678999999987531 124667899999999999995 67899999864
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.39 E-value=1.1e-07 Score=77.82 Aligned_cols=48 Identities=6% Similarity=-0.101 Sum_probs=40.7
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
..+-+..+||||++.|.+| ++++|||+||..||..|. ...||+|+...
T Consensus 24 ~~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred ccCcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 3455678999999999877 788999999999999974 67899998754
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.38 E-value=4.3e-08 Score=86.70 Aligned_cols=47 Identities=30% Similarity=0.593 Sum_probs=38.4
Q ss_pred CCCCCCccccccCCcCCCCCCceee-cCCCcccchhhhccc---cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.+.+..+||||++.|..+ +++ +|||+||..|+..|. ...||+||...
T Consensus 50 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNT----MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp CCHHHHBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred hCCCCCCCcccChHhhCc----CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 344567999999999875 555 999999999999984 56799998754
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.38 E-value=1.8e-07 Score=76.33 Aligned_cols=47 Identities=11% Similarity=-0.124 Sum_probs=40.2
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCC-Ccccchhhhccc--cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICD-HSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~-H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+-+..+||||++.|.+| ++++|| |+||..||..|. ...||+|+...
T Consensus 18 ~~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp SCCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 455678999999999877 788999 999999999975 67899998754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.36 E-value=1.2e-07 Score=73.14 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
.+...|+||++.+..+ +.++|||. ||..|+..| ..||+||...
T Consensus 22 ~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV--DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC--SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC--ccCCCcCcCc
Confidence 3567999999999775 78899999 999999999 7899999754
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.36 E-value=1.2e-07 Score=79.49 Aligned_cols=47 Identities=30% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.+.+..+||||++.+..+ ++++|||+||..|+..|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 456678999999999876 677999999999999985 34899999865
No 57
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=8.5e-07 Score=69.74 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=38.9
Q ss_pred CCCCCccccccCCcCCCCCCceeecCC-----Ccccchhhhccc----cccCCCcccccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWT----VLSCQVCRFCHQ 121 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~-----H~F~~~Cl~~w~----~~~CP~Cr~~~~ 121 (391)
..+...|+||++.+++.. .+.+||+ |.||..||.+|. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 346789999999886532 2567896 999999999995 258999998763
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=2.4e-07 Score=87.45 Aligned_cols=49 Identities=10% Similarity=-0.057 Sum_probs=40.2
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.....+..+||||++.|.+| ++++|||+||..||..|. ...||+|+...
T Consensus 202 ~~~~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCCCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34455788999999999877 788999999999999974 33599998754
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.29 E-value=9e-08 Score=83.11 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=38.5
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCcccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 119 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~ 119 (391)
+.+..+||||++.|..+ ++++|||+||..|+..|. ...||+||..
T Consensus 28 l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 45678999999999876 678999999999999985 3589999984
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=2.7e-07 Score=74.45 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=37.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeec-CCCcccchhhhccc--c------ccCCC--ccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--V------LSCQV--CRF 118 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~-C~H~F~~~Cl~~w~--~------~~CP~--Cr~ 118 (391)
+..+..+||||++.|.+| ++++ |||+||..||..|. . ..||+ |+.
T Consensus 3 ~~~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCSSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred CCCcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 456788999999999877 7775 99999999999974 2 38999 874
No 61
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.14 E-value=3.4e-07 Score=77.19 Aligned_cols=48 Identities=19% Similarity=0.519 Sum_probs=1.0
Q ss_pred CCCccccccCCcCCCC--------------CCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~--------------~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+..+|+||++.|..+- ..++.++|+|.||..||..|. ...||+||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 4569999999986421 122346899999999999996 67899999864
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.05 E-value=1.1e-06 Score=77.76 Aligned_cols=47 Identities=30% Similarity=0.465 Sum_probs=40.2
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
.+.+..+||||++.|.+| ++++|||+||..|+..|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 456788999999999876 678999999999999985 34899999765
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.7e-06 Score=66.66 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=35.5
Q ss_pred CCCccccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
+..+|+||++.+..+ +.++|||. ||..|+..+ ..||+||...
T Consensus 24 ~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 66 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV--DKCPMCYTVI 66 (75)
T ss_dssp HHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhCC--CCCccCCcee
Confidence 467899999999765 67899999 999999755 6899999854
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.04 E-value=1.3e-06 Score=78.94 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=40.3
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
...+-+..+||||++.|.+| ++++|||+||..||..|. ...||+|+...
T Consensus 100 ~~~ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred ccCCcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 34556788999999999877 788999999999999974 23699998744
No 65
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.01 E-value=2e-06 Score=86.21 Aligned_cols=42 Identities=29% Similarity=0.576 Sum_probs=36.9
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 120 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 120 (391)
..|+||++.+..+ +.++|||.||..|+..|. ...||+||...
T Consensus 333 ~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 6899999999765 788999999999999994 57899999854
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.93 E-value=1.6e-06 Score=72.65 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=39.0
Q ss_pred CCCCccccccCCcCCC---CCCceeecCCCcccchhhhccc--cccCCCccccc
Q 016340 72 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~---~~g~it~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
.+...|+||++.|..+ ...++.++|||.||..|+..|. ...||+||...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 3567899999998542 2223678899999999999995 67999999865
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.6e-06 Score=80.03 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=39.5
Q ss_pred CCCCCCCCccccccCCcCCCCCCcee-ecCCCcccchhhhcc-c---cccCCC--ccccc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKW-T---VLSCQV--CRFCH 120 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it-~~C~H~F~~~Cl~~w-~---~~~CP~--Cr~~~ 120 (391)
..+.....+||||++.|.+| ++ +.|||+||..||..| . ...||+ |+...
T Consensus 175 v~~~~~el~CPIcl~~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred ecCCceeeECcCccCcccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 34567889999999999877 55 489999999999995 3 257999 98754
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.92 E-value=4.5e-06 Score=65.18 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=36.4
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
.+...|+||++.+..+ +.++|||. ||..|+..|. .||+||...
T Consensus 16 ~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i 59 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQLQ--SCPVCRSRV 59 (79)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTCS--BCTTTCCBC
T ss_pred CCCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhcC--cCCCCCchh
Confidence 3467899999998764 78899999 9999998874 999999854
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.92 E-value=4.3e-06 Score=82.79 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=37.9
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
.+..+||||++.+..+ +.++|||. ||..|+..| ..||+||...
T Consensus 293 ~~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~--~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL--RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC--SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC--CcCCCCCCCc
Confidence 4678999999999765 78899999 999999998 6899999854
No 70
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.81 E-value=3.8e-06 Score=62.90 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=35.7
Q ss_pred CCCccccccCCcCCCCCCceee--cCCCc-ccchhhhccc--cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILST--ICDHS-FQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~--~C~H~-F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
+...|+||++...+. +.+ +|||. ||..|+..|. ...||+||...
T Consensus 7 ~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 467899999998664 444 99999 8999999975 56899999743
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=3e-05 Score=58.76 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=35.9
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCc-ccchhhhccccccCCCccccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 120 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 120 (391)
.+...|+||++....+ +.+||+|. ||..|+.. ...||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~--~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY--FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH--CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc--CCCCCCCCcch
Confidence 4578999999998764 78899999 99999975 36899999854
No 72
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.69 E-value=7.5e-06 Score=61.03 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=34.7
Q ss_pred CCccccccCCcCCCCCCceee--cCCCc-ccchhhhccc--cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILST--ICDHS-FQCSCTAKWT--VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~--~C~H~-F~~~Cl~~w~--~~~CP~Cr~~~ 120 (391)
...|+||++...++ +.+ ||||. ||..|...|. ...||+||...
T Consensus 7 ~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDG----NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCE----EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCe----EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 56899999988653 344 99998 9999999864 56899999753
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.65 E-value=1.1e-05 Score=64.55 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=33.7
Q ss_pred CCCCccccccCCcCCCCCCcee-ecCCCcccchhhhc-cc---------cccCCC--cccc
Q 016340 72 TELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAK-WT---------VLSCQV--CRFC 119 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it-~~C~H~F~~~Cl~~-w~---------~~~CP~--Cr~~ 119 (391)
.+..+||||++.+..+. .+. .+|||.||..|+.. |. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ--MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG--EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc--ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45679999999986542 123 36999999999988 32 146888 8765
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=3.9e-05 Score=59.39 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=36.6
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc--c--ccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--V--LSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~--~~CP~Cr~~~ 120 (391)
....|+||.+.+.+ |..-..|+|.||..|+.+|. . ..||.|+...
T Consensus 14 ~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 36799999999975 33334799999999999995 2 6799999765
No 75
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.24 E-value=9.6e-05 Score=72.72 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=34.6
Q ss_pred CCCccccccCCcCCC----CCCceeecCCCcccchhhhcccc-------------ccCCCcccc
Q 016340 73 ELPTCPICLERLDPD----TSGILSTICDHSFQCSCTAKWTV-------------LSCQVCRFC 119 (391)
Q Consensus 73 E~~tCpiCle~ld~~----~~g~it~~C~H~F~~~Cl~~w~~-------------~~CP~Cr~~ 119 (391)
....|+||++.+.+. ........|+|.||..||.+|.. ..||.||..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 356899999988652 11112457999999999999951 469999874
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.10 E-value=0.00016 Score=53.52 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=34.1
Q ss_pred CCCccccccCCcCCCCCCceeecCC--C---cccchhhhccc----cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICD--H---SFQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~--H---~F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
+...|.||++..+++ +..||. + .||..||.+|. ...||+|++.+
T Consensus 5 ~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 467899999875443 457765 4 79999999995 46899999865
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.92 E-value=0.00023 Score=52.78 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=34.9
Q ss_pred CccccccCCcCCCCCCceee-cCCCcccchhhhccc--cccCCCcccc
Q 016340 75 PTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
..||||++.|.+| +.+ ++||+|+..|+.+|. +..||+++..
T Consensus 4 ~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~ 47 (61)
T 2bay_A 4 MLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEP 47 (61)
T ss_dssp CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCB
T ss_pred EEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCC
Confidence 5799999999876 566 899999999999995 5579998763
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.17 E-value=0.0018 Score=52.67 Aligned_cols=65 Identities=26% Similarity=0.473 Sum_probs=44.4
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhhccc---cccCCCccccccCCCCCcccccCcccceeeecccccccccCC
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 151 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG~vgCgr~ 151 (391)
-|++|---+..- | ..+||.|.||..|...|. +..||.|+...+.. ..+.. +++|+|-+ ..||-|.
T Consensus 3 fC~~C~~Pi~iy--g-RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV-----e~~~~-~~if~C~~--~~~Ckrt 70 (101)
T 3vk6_A 3 FCDKCGLPIKVY--G-RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI-----EQCTR-GSLFMCSI--VQGCKRT 70 (101)
T ss_dssp BCTTTCSBCSEE--E-EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE-----EEEEG-GGCCCCCC--CCCCCCC
T ss_pred ecCccCCCeEEE--e-eeccccccHHHHHHHHHHhccCCCCcCcCCeeeee-----EEecc-CCEEECCC--CCCHHHH
Confidence 477776555321 1 478999999999999974 67999998755221 11332 78888764 6788764
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.43 E-value=0.01 Score=47.47 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCccccccCC-cCCCCCCcee--ecCCCcccchhhhc-cccccC-CCccccccCCC-CCcccccCccc---ceeeeccc
Q 016340 73 ELPTCPICLER-LDPDTSGILS--TICDHSFQCSCTAK-WTVLSC-QVCRFCHQQDE-RPTCSVCGTVE---NLWVCLIC 143 (391)
Q Consensus 73 E~~tCpiCle~-ld~~~~g~it--~~C~H~F~~~Cl~~-w~~~~C-P~Cr~~~~~~~-~~~C~~C~~~~---~lwiCL~C 143 (391)
|.++|+||++. +.++ +. +.|+|+||..|+.. |....- ...+.+..... ...-..|..+. -.+.|..|
T Consensus 2 ee~~C~~C~~~~~~~a----v~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~ 77 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA----VKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTD 77 (101)
T ss_dssp CCCBCTTCCSSSCCBC----CEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTT
T ss_pred CCCCCcCCCCCCCCCc----eEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCC
Confidence 57899999975 4444 33 78999999999997 542111 11111110010 11223456552 24568888
Q ss_pred ccccccCCC
Q 016340 144 GFVGCGRYK 152 (391)
Q Consensus 144 G~vgCgr~~ 152 (391)
+...|..+.
T Consensus 78 ~~~iC~~C~ 86 (101)
T 2jun_A 78 DQLICALCK 86 (101)
T ss_dssp TEEECHHHH
T ss_pred CCccchhcC
Confidence 887776543
No 80
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.09 E-value=0.65 Score=47.61 Aligned_cols=97 Identities=8% Similarity=0.091 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKN 307 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~n 307 (391)
...|+.|..+|..+-.+-- +=-.||..+++.++.+..... ..++...+-..+|+.++.-++++++.....-+.|+.+
T Consensus 63 tkrINELKnqLEdlsKnsK-dseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNK-DSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666621111 112345555555443322211 2222233333467777777777665544555788889
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016340 308 QEIMRKKFKEIEEREITSLR 327 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~ 327 (391)
++.+..+|+.||-....+++
T Consensus 140 Ledq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876654444
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.03 E-value=0.63 Score=52.29 Aligned_cols=67 Identities=9% Similarity=0.002 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhH
Q 016340 284 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 284 ~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q 350 (391)
++++..+++|...+++-...+.+..+.+++++.++.+++.+.+....+++..|+.|+.||.--+..+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333444444444444545545555555555667777777787777444333
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.30 E-value=1.2 Score=36.97 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 310 IMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 310 ~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
.+..+++.|.+++.-+.+..+++|.+|+.||.+
T Consensus 87 dLE~~iesL~eEl~FLKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667777777777777788899999888753
No 83
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.89 E-value=0.051 Score=50.76 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=35.8
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhccc----cccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~----~~~CP~Cr~~~ 120 (391)
..+.|.+|.+...+. ..=..|++.||..|+.+|. ...||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 388999999998753 3333499999999999984 45899998765
No 84
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.11 E-value=6.3 Score=35.35 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEA 293 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e 293 (391)
+..+|+.++..+..|
T Consensus 57 ~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 57 RNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.34 E-value=4 Score=34.77 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHh
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~ 346 (391)
+-+++.+.+.++.+++.+..-...|-......+.++++++.+.. ...+++.+|++++..|---
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~----~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK----ELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333343333444444444443332 2335778888888877433
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.33 E-value=9.1 Score=35.49 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016340 304 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQI 340 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~ 340 (391)
+...++.....+..++..+.......++.+.++++++
T Consensus 123 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 123 KSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQ 159 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.98 E-value=3.7 Score=32.20 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 277 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
...+.+++..+.+....++.+..-+..|......+..++.+++++...+.+ ...+|+++|.||---|
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~----~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS----KNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 345566666666666666666655666655555555557777777666555 3468888888875433
No 88
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.18 E-value=8.7 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhHHHHHHhHhHhh
Q 016340 324 TSLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 324 ~~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
..++.++..+..|++||.+|---+
T Consensus 122 ~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 122 EQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678899999999885433
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.72 E-value=2.7 Score=32.17 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQ 308 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq 308 (391)
.-++.+..||+.||.+.= ++.-.-.+|=.+++.+.-|...++.-+.++....
T Consensus 9 kevEnLi~EN~eLl~TKN----------------------------aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 9 REVENLILENTQLLETKN----------------------------ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 447888899998875441 1111112333444444445544444445555555
Q ss_pred HHHHHHHHHHHHHH
Q 016340 309 EIMRKKFKEIEERE 322 (391)
Q Consensus 309 ~~~~~~~~~le~~~ 322 (391)
..+..+++++|+++
T Consensus 61 ~r~~~ri~elEeEl 74 (77)
T 2w83_C 61 LKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666544
No 90
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.25 E-value=5.6 Score=39.75 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhh
Q 016340 280 MQDIQNELDICEEAKKA----VADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~----~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~ 349 (391)
..-||++|+.+++.... ...-|......|+.+.+++.+-+.+ +++.+.+|.+|+.+|.|+-.-++-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKK----VEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655543222 2345666666666666665543322 334455667777777766655544
No 91
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.23 E-value=3 Score=34.91 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 252 YYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQ 308 (391)
Q Consensus 252 yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq 308 (391)
||..+++++....... .+++. .....+.+++..+..+..|+..++..+.+|....
T Consensus 12 ~y~~K~eel~~~~~~~-~~~l~-~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRH-GDDLR-NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6666766665433221 01111 1223445555555555555555555555554433
No 92
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.33 E-value=2.7 Score=35.30 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
+.+++..+..+..|+..++.++.+|..
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444455555554444444444443
No 93
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.73 E-value=6.8 Score=40.23 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 231 VEAIVDEYNRLLATQLETQRQYYESL 256 (391)
Q Consensus 231 ~e~~~~Ey~~ll~sqLesQR~yyE~~ 256 (391)
|..+.++.+.=|++-++.=|..||+.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 44455666666666666666666665
No 94
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.62 E-value=13 Score=30.97 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHHhHhH
Q 016340 329 RDATILDLEEQIRDLTV 345 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlmf 345 (391)
.+.++.+|++||.|+-.
T Consensus 109 le~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 109 LEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44688899999988744
No 95
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.79 E-value=11 Score=42.36 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 309 EIMRKKFKEIEEREI 323 (391)
Q Consensus 309 ~~~~~~~~~le~~~~ 323 (391)
+.++.++..|+++..
T Consensus 1019 ~~L~~kv~~L~~e~~ 1033 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNT 1033 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554443
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.03 E-value=14 Score=37.89 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=5.6
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
++.+|++++.++
T Consensus 559 ~~~~l~~e~~~~ 570 (597)
T 3oja_B 559 KQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.49 E-value=25 Score=32.42 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 306 KNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 306 ~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
......+..+..+..+........++++..|..+..
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444455555555444
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.10 E-value=1.7 Score=35.59 Aligned_cols=60 Identities=25% Similarity=0.571 Sum_probs=36.0
Q ss_pred CccccccCCcCC----CC-CCce-eecCCCcccchhhhcc---------ccccCCCccccccCCCCCcccccCcc---cc
Q 016340 75 PTCPICLERLDP----DT-SGIL-STICDHSFQCSCTAKW---------TVLSCQVCRFCHQQDERPTCSVCGTV---EN 136 (391)
Q Consensus 75 ~tCpiCle~ld~----~~-~g~i-t~~C~H~F~~~Cl~~w---------~~~~CP~Cr~~~~~~~~~~C~~C~~~---~~ 136 (391)
+.|.+|+.--.. .. ..++ =..|+.+||..|+... ....||.|+. |.+|+.. ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~---------C~~C~~~~~~~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS---------CILCGTSENDDQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCC---------CTTTTCCTTTTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCc---------cCcccccCCCCc
Confidence 679999864311 00 1112 2458999999999753 1456888753 6677764 34
Q ss_pred eeeeccc
Q 016340 137 LWVCLIC 143 (391)
Q Consensus 137 lwiCL~C 143 (391)
+..|-.|
T Consensus 73 ll~Cd~C 79 (114)
T 2kwj_A 73 LLFCDDC 79 (114)
T ss_dssp EEECSSS
T ss_pred eEEcCCC
Confidence 5556544
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.93 E-value=16 Score=29.48 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
+.-+.|..+++.++..+ .++-+.+..-+...+.+.++++.. +........++..|++||+
T Consensus 23 NEKsal~YqVdlLKD~L---Ee~eE~~aql~Re~~eK~re~e~~-Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDML---LELEEQLAESRRQYEEKNKEFERE-KHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33445555666555433 334445555555555555555432 2222223345555555554
No 100
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.66 E-value=14 Score=29.24 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK 313 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~ 313 (391)
.++.|..++...-....+|.+-|+.|......|+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666666666666666666666655544443
No 101
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.90 E-value=23 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
+....|.++.+.+...++.++.+.. ....++.+|+.+++.++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~----~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEK----KLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4444555666666666655554432 33345666666666554
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.82 E-value=2.5 Score=34.37 Aligned_cols=63 Identities=25% Similarity=0.626 Sum_probs=37.7
Q ss_pred CCCCccccccCCcCCC---CCC-ce-eecCCCcccchhhhcc---------ccccCCCccccccCCCCCcccccCcc---
Q 016340 72 TELPTCPICLERLDPD---TSG-IL-STICDHSFQCSCTAKW---------TVLSCQVCRFCHQQDERPTCSVCGTV--- 134 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~---~~g-~i-t~~C~H~F~~~Cl~~w---------~~~~CP~Cr~~~~~~~~~~C~~C~~~--- 134 (391)
+..+.|.+|+.-=... ..+ ++ =..|+.+||..|+..+ ....||.|+. |.+|+..
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~---------C~vC~~~~~~ 73 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT---------CSSCRDQGKN 73 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC---------BTTTCCCCCT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc---------cccccCcCCC
Confidence 4578899998642111 111 12 1358999999999532 2457888863 6666643
Q ss_pred -cceeeeccc
Q 016340 135 -ENLWVCLIC 143 (391)
Q Consensus 135 -~~lwiCL~C 143 (391)
+.+..|-.|
T Consensus 74 ~~~ll~Cd~C 83 (112)
T 3v43_A 74 ADNMLFCDSC 83 (112)
T ss_dssp TCCCEECTTT
T ss_pred ccceEEcCCC
Confidence 245555554
No 103
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=78.79 E-value=6.4 Score=34.40 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 016340 234 IVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA-----VADVNSKLIKNQ 308 (391)
Q Consensus 234 ~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~-----~~~ln~~L~~nq 308 (391)
++.||+.+|+.-+++=..|.++. ..+... +...+...+...++.|+.+|.+..++.+. +.++-..+..+.
T Consensus 56 l~qel~~~l~~~ld~l~~~~~~l----~~~L~P-~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~ 130 (165)
T 1gs9_A 56 VTQELRALMDETMKELKAYKSEL----EEQLTP-VAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQST 130 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TTSCCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555434442222 222211 11222233445555666666544444321 123333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 016340 309 EIMRKKFKEIEEREITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~r 341 (391)
+.++.++.-.-+++. +.....+++|+.+|.
T Consensus 131 EelR~kl~P~~eeL~---~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 131 EELRVRLASHLRKLR---KRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhhHHHHHHHhh
Confidence 555555544443332 223345666766664
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.17 E-value=20 Score=35.81 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=8.1
Q ss_pred HHHHHHhhHHHHHHhHh
Q 016340 328 LRDATILDLEEQIRDLT 344 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlm 344 (391)
..+.+|.+-.+.+.|+.
T Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 460 EADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhcccHHHHHH
Confidence 33444555555555543
No 105
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=77.81 E-value=11 Score=33.64 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 233 AIVDEYNRLLATQLETQRQYYESLLAE 259 (391)
Q Consensus 233 ~~~~Ey~~ll~sqLesQR~yyE~~l~~ 259 (391)
.+..|++.+++.-++.-+.|.+..-.+
T Consensus 55 ~l~~el~~l~~e~~~~l~~~~~~l~~q 81 (191)
T 1nfn_A 55 QVTQELRALMDETMKELKAYKSELEEQ 81 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888877775554333
No 106
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.78 E-value=23 Score=27.81 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 016340 299 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 299 ~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
+....|.++.+.+...++.++.+. ...+.++.+|+.+++.+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~----~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQE----ERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 455566666666666666665543 23344666777666654
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.35 E-value=4 Score=32.91 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc------cccCCCcc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCR 117 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~------~~~CP~Cr 117 (391)
.+...|.||.+.=+.. .-+.=..|+.+||..|+.... ...||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567899998754321 001123588999999997642 23566654
No 108
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.50 E-value=62 Score=31.92 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 276 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 276 ~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~ 322 (391)
..+-..+|+.++.-+++....--.--+.|+.+++.+..+|+.||-..
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554433211234467788888888888887654
No 109
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.64 E-value=31 Score=27.55 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 016340 244 TQLETQRQYYESLLAEAKSKRE 265 (391)
Q Consensus 244 sqLesQR~yyE~~l~~~~~~~~ 265 (391)
+||+++...++..+.++.....
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 5667777778888877766543
No 110
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.58 E-value=70 Score=31.60 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 275 AVASKMQDIQNELDICEEAKKA----VADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~----~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
.+.+++..++..+.++++...- +-.|-.+|.+...+-.++++++|.+.. ..+.++++++.||..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT----TLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4556666666666666654322 234445565554444456666665543 333455555555544
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.58 E-value=17 Score=29.84 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 016340 292 EAKKAVADVNSKL 304 (391)
Q Consensus 292 ~e~~~~~~ln~~L 304 (391)
+|+..++..++.|
T Consensus 42 ~El~~lr~~~~~l 54 (111)
T 2v66_B 42 DDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.52 E-value=28 Score=26.93 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016340 294 KKAVADVNSKLIKNQEIMRKKFK 316 (391)
Q Consensus 294 ~~~~~~ln~~L~~nq~~~~~~~~ 316 (391)
+..+..-|..|...+..|+.++.
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555443
No 113
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.14 E-value=41 Score=28.72 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc--cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 246 LETQRQYYESLLAEAKSKRESL--IPETVEK---AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 320 (391)
Q Consensus 246 LesQR~yyE~~l~~~~~~~~~~--~~~~~~~---~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~ 320 (391)
||++-.-++++|..+..+.... +++...+ .+..++.-+...|++...-......-...|...+...-+.++.|+.
T Consensus 43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6777777777777776654321 1211111 2334444444445444433333333233333333333344444432
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 321 REITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 321 ~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
... ...+.-...+++|++|.
T Consensus 123 ~ee----kas~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 123 KVE----ELLSKNYHLENEVARLK 142 (147)
T ss_dssp TTT----THHHHHHHHHHHHTTSC
T ss_pred hHH----HHHHHHHHHHHHHHHHH
Confidence 211 11123455666666654
No 114
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=74.01 E-value=20 Score=30.89 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHhhHHHHHHhHhHhhhhHHHhhccCCCCCcCCcEEe
Q 016340 328 LRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 368 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~le~q~ki~~~~~~~ei~~g~i~ 368 (391)
..++++.++.|+.+-|.|.++.-++|. -++||..|+|-
T Consensus 81 q~~~ek~~r~e~k~~l~~ql~qv~~L~---lGsEv~qg~vE 118 (150)
T 4dci_A 81 QVAGKRSELEEQKRNLLQQQAQVRELE---MDQIVEQGQLE 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC---TTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CcCEEeeceee
Confidence 344677888888888888887766664 46789999884
No 115
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.15 E-value=17 Score=30.80 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=4.8
Q ss_pred HHHHHHHHhhHHHHHHhHhHh
Q 016340 326 LRLRDATILDLEEQIRDLTVY 346 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~ 346 (391)
++.++.-+..|++|+.+|---
T Consensus 112 l~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 112 LREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp TTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888887543
No 116
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.47 E-value=5.7 Score=31.09 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhcc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
.+..++.|+||--.-.... +-=-.|+..||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l--~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESL--FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCC--SSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccce--eccccccccccHhhcccc
Confidence 4456889999984433320 001247999999999775
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.48 E-value=36 Score=27.34 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLI 305 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~ 305 (391)
..+..|+.+++.|+.|...|++-...|.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555544444443
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.19 E-value=59 Score=27.38 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.5
Q ss_pred HHHHHH
Q 016340 256 LLAEAK 261 (391)
Q Consensus 256 ~l~~~~ 261 (391)
+|.++.
T Consensus 40 km~ei~ 45 (138)
T 3hnw_A 40 KITEFN 45 (138)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 344443
No 119
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=64.44 E-value=46 Score=30.17 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAK 294 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~ 294 (391)
....+|..+++++-.++
T Consensus 153 ~~~~~l~~qlE~~v~~K 169 (213)
T 1ik9_A 153 RDWNDVQGRFEKAVSAK 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 120
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=64.34 E-value=91 Score=32.49 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=8.6
Q ss_pred HHHhhHHHHHHhHh
Q 016340 331 ATILDLEEQIRDLT 344 (391)
Q Consensus 331 ~~i~dL~EQ~rDlm 344 (391)
+++..|+.||.||-
T Consensus 567 ~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 567 KESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666653
No 121
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.39 E-value=70 Score=27.53 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
..+..++.++..++++.+.-...++.|......++-.+..+|++
T Consensus 75 ~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 75 KELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444333334444444444444444444443
No 122
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=63.04 E-value=45 Score=24.88 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
.++|..+++.-.+|...|.-|-.+|+....++..--+.||.+... -+..+.+|+..+.|
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~----~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLN----LQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHhhccc
Confidence 445566666666666555555555555444444333333333221 22345555544443
No 123
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.43 E-value=37 Score=26.09 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 244 TQLETQRQYYESLLAEAK 261 (391)
Q Consensus 244 sqLesQR~yyE~~l~~~~ 261 (391)
++|++|+..-..+|+.++
T Consensus 2 ~~l~~e~e~~~~klq~~E 19 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLE 19 (79)
T ss_dssp --------CTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455666555555555443
No 124
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=61.70 E-value=96 Score=28.27 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEA 260 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~ 260 (391)
++.+++-+..||...+...+|.=|.-.+-.+.++
T Consensus 93 ~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 93 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3567777888888877777777664333333333
No 125
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.47 E-value=9.2 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.1
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++ ....+-...+.|.+.++|+.....+||..|.
T Consensus 44 ~v~i~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 44 DVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp EEEEECC-TTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEEec-CCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678884 3336778899999999999999999999875
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.75 E-value=17 Score=29.45 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=40.7
Q ss_pred CCCCCCccccccCCcCCCCCCceee----cCCCcccchhhhccc----cccCCCccccccCCCCCcccccCcccceeeec
Q 016340 70 GFTELPTCPICLERLDPDTSGILST----ICDHSFQCSCTAKWT----VLSCQVCRFCHQQDERPTCSVCGTVENLWVCL 141 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~----~C~H~F~~~Cl~~w~----~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL 141 (391)
...+...|.+|.+- |-+.. .|...||..|+..-. ...||.| .|..|+.... +.|.
T Consensus 11 ~~~~~~~C~~C~~~------G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c----------~C~~C~k~~~-~~C~ 73 (107)
T 4gne_A 11 KQMHEDYCFQCGDG------GELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWH----------QCDECSSAAV-SFCE 73 (107)
T ss_dssp CCSSCSSCTTTCCC------SEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGG----------BCTTTCSBCC-EECS
T ss_pred cCCCCCCCCcCCCC------CcEeEECCCCCCcccccccCcCCcCCCCCEECCCC----------CCCcCCCCCC-cCcC
Confidence 34567789999831 21221 366889999986321 3457776 2667776554 6688
Q ss_pred ccccccccC
Q 016340 142 ICGFVGCGR 150 (391)
Q Consensus 142 ~CG~vgCgr 150 (391)
.|....|..
T Consensus 74 ~Cp~sfC~~ 82 (107)
T 4gne_A 74 FCPHSFCKD 82 (107)
T ss_dssp SSSCEECTT
T ss_pred CCCcchhhh
Confidence 888877753
No 127
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=59.98 E-value=70 Score=26.13 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 281 QDIQNELDICEEAKKAVAD-VN---SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~~~~-ln---~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
..|+..|.++..+++.+.+ ++ +.=.+....+..++...|..+.++.+...+-..+.++|+.-|++ .++.+..
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~---~Re~V~~ 91 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ---SREQVSE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4455555555555544322 11 11112223344444444544544444444556778888888888 4555543
No 128
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.94 E-value=9.6 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=31.3
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++ ...++-...+.|.+..+|+.....+||..|.
T Consensus 44 ~v~i~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 44 SCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp EEEEECC-CCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEEec-CCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 4678884 3336778899999999999999999999875
No 129
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.54 E-value=37 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=9.9
Q ss_pred HHHHHHHHhhHHHHHH
Q 016340 326 LRLRDATILDLEEQIR 341 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~r 341 (391)
+..++++|.+|+.++.
T Consensus 49 L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 49 LDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777776664
No 130
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.23 E-value=58 Score=24.96 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.0
Q ss_pred HHHHHhhH
Q 016340 329 RDATILDL 336 (391)
Q Consensus 329 ~~~~i~dL 336 (391)
.+-+|-||
T Consensus 57 Ld~KI~eL 64 (79)
T 3cvf_A 57 LDVSLFEL 64 (79)
T ss_dssp HHHHHHHH
T ss_pred HhhHHHHH
Confidence 33333333
No 131
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=58.73 E-value=7.8 Score=30.93 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=36.8
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCceeecC-CCcccchhhhccc--cccCCCcccc
Q 016340 66 TPPAGFTELPTCPICLERLDPDTSGILSTIC-DHSFQCSCTAKWT--VLSCQVCRFC 119 (391)
Q Consensus 66 ~~~~~~~E~~tCpiCle~ld~~~~g~it~~C-~H~F~~~Cl~~w~--~~~CP~Cr~~ 119 (391)
.+.+++.--..|-.||...+. + +.| +|-+|..||.... +..||+|.+.
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-----L-V~C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-----L-VECNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-----E-EECSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred cCCccccCcccChhhccccCC-----e-eeecchhhHHHHHHHHHhhccCCcccCCc
Confidence 455566677789999988774 3 346 7999999998853 6789999875
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.66 E-value=15 Score=36.47 Aligned_cols=35 Identities=6% Similarity=0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKK 314 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~ 314 (391)
+..++.+++.++++...+.+-.+.+....+.+.++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544444444333333333333333333
No 133
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.60 E-value=50 Score=25.57 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKN 307 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~n 307 (391)
...+|...++.+++|...++++|+.|+.-
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666656555443
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=58.31 E-value=11 Score=28.11 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|++ |.-..+-...+.|.+.++|+.....+||..|..
T Consensus 37 ~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 37 YADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp EEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred EEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357777 333456678999999999999999999988754
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=57.20 E-value=12 Score=27.49 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhccc------cccCCCccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRF 118 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~------~~~CP~Cr~ 118 (391)
.....|.||.+-= .-+.=-.|...||..|+.... ...||.|..
T Consensus 10 ~~~~~C~vC~~~~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDGT----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCCT----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCCCC----eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3456799997521 111222478999999996431 346666654
No 136
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.13 E-value=81 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=9.2
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
++++.|+-+..+|-..|
T Consensus 92 ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 92 AEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhHh
Confidence 35555555555555544
No 137
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.10 E-value=2.1e+02 Score=36.00 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.5
Q ss_pred EEEecCChhhHHHHHHH
Q 016340 17 VLIKLVDQLTADEFYSN 33 (391)
Q Consensus 17 vLlkF~~~~~A~~f~~~ 33 (391)
+-|.|.++.+|..+...
T Consensus 1334 ~~infS~~Tta~~l~~~ 1350 (3245)
T 3vkg_A 1334 VSLNFSSATTPELLLKT 1350 (3245)
T ss_dssp EEECCCTTCCHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHH
Confidence 34444444444444433
No 138
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.99 E-value=33 Score=25.87 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=10.0
Q ss_pred HHHHHHHHhhHHHHHHhHh
Q 016340 326 LRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlm 344 (391)
++.++.++.+.++.|+.|-
T Consensus 42 I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555543
No 139
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.98 E-value=1.1e+02 Score=27.30 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 290 CEEAKKAVADVNSKLIKNQEIM 311 (391)
Q Consensus 290 ~~~e~~~~~~ln~~L~~nq~~~ 311 (391)
+.+++..++..+..|...+..+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333
No 140
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.55 E-value=56 Score=24.74 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 016340 306 KNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 342 (391)
Q Consensus 306 ~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rD 342 (391)
.+.+.++.++..|-.+.........+.|..|+.+++.
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444444433333334567777777765
No 141
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=56.19 E-value=14 Score=29.27 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.0
Q ss_pred ccceeecCCC--CCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~--~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++... ..+--+-++|.+..+|..-...+||+.|..
T Consensus 42 ~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 42 KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678883221 357788999999999999999999999953
No 142
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.13 E-value=80 Score=31.14 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSKRESLI--PETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 316 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~ 316 (391)
|..-|+.|-+=|+..|+++....+... ...+-.-+..-.+.++..+.....--....++++.|++.+..++.+|.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888876553211 111111111122222222322222223345677777777777776654
No 143
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=54.67 E-value=15 Score=29.32 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.6
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++..-.++-...+.|.+.++|+.....+||..|..
T Consensus 36 ~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 36 EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4677774322356678999999999999999999998853
No 144
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.38 E-value=72 Score=24.55 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHh
Q 016340 331 ATILDLEEQIRD 342 (391)
Q Consensus 331 ~~i~dL~EQ~rD 342 (391)
.+|+.|++++++
T Consensus 59 ~e~~~l~~~~ee 70 (81)
T 1wt6_A 59 AHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356666666666
No 145
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.22 E-value=73 Score=24.54 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 293 AKKAVADVNSKLIKN 307 (391)
Q Consensus 293 e~~~~~~ln~~L~~n 307 (391)
|...|++-|..|...
T Consensus 28 EieELKekN~~L~~e 42 (81)
T 2jee_A 28 EIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 146
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=54.07 E-value=70 Score=32.70 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=14.6
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..+++..++++++.+++.-|
T Consensus 132 i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 132 LTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556777888888777654
No 147
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.96 E-value=69 Score=24.20 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016340 311 MRKKFKEIE 319 (391)
Q Consensus 311 ~~~~~~~le 319 (391)
+..++..+|
T Consensus 46 L~kKiq~lE 54 (81)
T 1ic2_A 46 LQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 148
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.91 E-value=59 Score=33.12 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhHHHHHHhHhHhh
Q 016340 325 SLRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 325 ~~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
.++..+++..++++++.+++..|
T Consensus 119 ~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 119 QVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445556677777777777654
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=53.86 E-value=13 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=30.6
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -.++-...+.|.+..+|......+||..|..
T Consensus 31 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 31 NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356777321 2346678899999999999999999987753
No 150
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=53.74 E-value=14 Score=27.07 Aligned_cols=39 Identities=8% Similarity=0.222 Sum_probs=30.0
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+.++|......+||..|.
T Consensus 35 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 35 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45777742 2224557889999999999999999998775
No 151
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.21 E-value=81 Score=35.54 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=7.5
Q ss_pred cccCCcCCCC--CCcee
Q 016340 79 ICLERLDPDT--SGILS 93 (391)
Q Consensus 79 iCle~ld~~~--~g~it 93 (391)
.|++.++.|. .||+.
T Consensus 522 ~~~~lie~~~~~~Gil~ 538 (1184)
T 1i84_S 522 PCIELIERPTNPPGVLA 538 (1184)
T ss_dssp HHHHTTSCCSSSCCHHH
T ss_pred HHHHHHhCCCCCCCchh
Confidence 4566665432 26554
No 152
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.01 E-value=16 Score=28.04 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.2
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++ .-..+-...+.|.+..+|......+||..|.
T Consensus 44 ~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 44 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp EEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4677884 3345678899999999999999999999874
No 153
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=52.98 E-value=11 Score=29.72 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=30.5
Q ss_pred ccceeecCC---CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA---MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~---~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+|+.. .+.+=-+-++|.+..+|..-...+||+.|.
T Consensus 44 ~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 44 SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 466777321 134557889999999999999999999995
No 154
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.79 E-value=15 Score=28.00 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+-...+.|.+.++|+.....+||..|.
T Consensus 46 ~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 46 DLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred EEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457777432234567899999999999999999998875
No 155
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=52.28 E-value=16 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=31.1
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.....+=-+-+.|.+..+|..-...+||+.|..
T Consensus 56 ~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 56 EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4577774322345578899999999999999999999864
No 156
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.19 E-value=36 Score=34.73 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=14.3
Q ss_pred HHHHHHHhhHHHHHHhHhHhh
Q 016340 327 RLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~l 347 (391)
+..+++..++++++.+++.-|
T Consensus 88 ~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 88 KEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344456777888888877755
No 157
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.17 E-value=34 Score=27.75 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHhhHHHHHHhH
Q 016340 328 LRDATILDLEEQIRDL 343 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDl 343 (391)
..+-+|.||..+|.||
T Consensus 74 kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 74 RKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHh
Confidence 3456899999999998
No 158
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.91 E-value=70 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 229 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 262 (391)
Q Consensus 229 ~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~ 262 (391)
.=+..|..+|..+...-.+.=-.||..+++++..
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~ 42 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSE 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345666667666655555555566666665543
No 159
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=51.62 E-value=17 Score=26.40 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=30.1
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -.++-...+.|.+..+|+.....+||..|.
T Consensus 30 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 30 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 356777412 223567889999999999999999999875
No 160
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.50 E-value=20 Score=26.83 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -.++-...+.|.+.++|......+||..|..
T Consensus 34 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 34 NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 356777321 2345678999999999999999999987753
No 161
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.47 E-value=15 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=29.4
Q ss_pred ceeec-CCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 4 NTVRN-DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 4 r~ir~-d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+|+++ ..-.++-...+.|.+.++|+.....+||..|.
T Consensus 37 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 37 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp EECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred EEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 77774 12234567899999999999999999999875
No 162
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=51.30 E-value=15 Score=27.46 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=30.4
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+-...+.|.+..+|+.-...+||..|.
T Consensus 45 ~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 45 KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357777422223567899999999999999999998875
No 163
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=51.11 E-value=57 Score=22.43 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=4.8
Q ss_pred HHHhhHHHH
Q 016340 331 ATILDLEEQ 339 (391)
Q Consensus 331 ~~i~dL~EQ 339 (391)
+.|..|+.+
T Consensus 37 qRit~lE~~ 45 (46)
T 3swy_A 37 QRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 455555554
No 164
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.08 E-value=76 Score=23.87 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=4.3
Q ss_pred HHHHHHHhhHH
Q 016340 327 RLRDATILDLE 337 (391)
Q Consensus 327 ~~~~~~i~dL~ 337 (391)
...+-+|-||.
T Consensus 49 e~Ld~KI~eL~ 59 (72)
T 3cve_A 49 EILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 33343444443
No 165
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.04 E-value=16 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=30.8
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+-...+.|.+.++|+.....+||..|.
T Consensus 44 ~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 44 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp EEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357777432234667899999999999999999999885
No 166
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.91 E-value=1e+02 Score=25.31 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhHhHhhh
Q 016340 297 VADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 297 ~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~---~~~~~i~dL~EQ~rDlmf~le 348 (391)
..++...|.+....+..+++++++++..... ........|++++.||---|+
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666665555433222 122345566666666655443
No 167
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=50.79 E-value=35 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhH
Q 016340 310 IMRKKFKEIEEREITS---LRLRDATILDLEEQIRDL 343 (391)
Q Consensus 310 ~~~~~~~~le~~~~~~---~~~~~~~i~dL~EQ~rDl 343 (391)
++-.+|..+|++.-++ .+..+-+|.||..+|.||
T Consensus 53 eLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 53 ELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444454443222 333456899999999999
No 168
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.71 E-value=13 Score=29.25 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=31.0
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.+ ..+-...+.|.+..+|+.....+||..|.
T Consensus 58 ~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 58 DVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp CEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred EEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467777433 46777889999999999999999999875
No 169
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=50.70 E-value=11 Score=29.24 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=24.2
Q ss_pred CCCCccccccCCcCCCCCCceeecC----CCcccchhhhcc
Q 016340 72 TELPTCPICLERLDPDTSGILSTIC----DHSFQCSCTAKW 108 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C----~H~F~~~Cl~~w 108 (391)
.-...|.+|.|+|++. --..| .|.||-.|-...
T Consensus 13 ~a~l~CtlC~erLEdt----HFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT----HFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSST----TSEECSSCSSCEECHHHHHHH
T ss_pred CCeeEeecchhhhccC----ceeeCCCccCCeeeccccHHH
Confidence 3467899999999764 22234 699999997663
No 170
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.64 E-value=73 Score=23.55 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016340 242 LATQLETQRQYYESLLAEAKSKRE 265 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~ 265 (391)
|++-|..=|.-||.....-.++.+
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE 30 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAE 30 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 566777888889988777665443
No 171
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=49.67 E-value=87 Score=28.20 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 312 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~ 312 (391)
....+|...++.+.+|...+++.|+.|....++.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777888777777877766555443
No 172
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=49.60 E-value=19 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.0
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++..-..+-...+.|.+..+|+.-...+||..|..
T Consensus 44 ~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 44 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 4677874222236678899999999999999999998754
No 173
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.27 E-value=2.1e+02 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=8.9
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
++..+++++|++|.--|
T Consensus 2028 ~~L~~~~~~L~~le~~l 2044 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSI 2044 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555565555544
No 174
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.03 E-value=1.2e+02 Score=25.67 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHHhHhHhhhh
Q 016340 330 DATILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~ 349 (391)
..+|.+|+++|+.+.-.|-+
T Consensus 100 E~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45788999999887665543
No 175
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=48.66 E-value=1.4e+02 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHhHh
Q 016340 309 EIMRKKFKEIEEREIT---SLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~---~~~~~~~~i~dL~EQ~rDlm 344 (391)
..+-.+|..+|++.-. ..+..+-+|.+|..+|.||+
T Consensus 68 kELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 68 RQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3344445555554322 23344568999999999996
No 176
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.48 E-value=19 Score=28.06 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.2
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++..-.++-...+.|.+..+|+.....+||..|..
T Consensus 54 ~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 54 STRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 4677884222245678999999999999999999998854
No 177
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.40 E-value=14 Score=27.14 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=29.3
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|+.....+||..|.
T Consensus 34 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 34 STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 356777321 223556889999999999999999998774
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.36 E-value=24 Score=26.04 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
+....+.|+.|-..+... ....-+..||..|. .|..|..
T Consensus 11 ~~~~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF------~C~~C~~ 49 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV----FVKLRDRHRHPECY------VCTDCGT 49 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS----CEECSSCEECTTTT------SCSSSCC
T ss_pred CCCCCCccccCCCCccCc----EEEECcceeCcCcC------eeCCCCC
Confidence 446688999999987643 33446888998884 6777755
No 179
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=48.13 E-value=17 Score=31.67 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=26.0
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhcc------ccccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w------~~~~CP~Cr~~~ 120 (391)
...|.||.+- . .-+.=-.|...||..|+... +...||.|+...
T Consensus 4 ~~~C~~C~~~-g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG-G---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC-S---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC-C---eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999843 1 11112247889999998542 135677776644
No 180
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=47.89 E-value=22 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..+ ..+-...+.|.+.++|+.-...+||..|.
T Consensus 48 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678883221 23445789999999999999999999875
No 181
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.79 E-value=19 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=30.0
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+.++|+.....+||..|.
T Consensus 37 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677742 1224557889999999999999999998875
No 182
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.49 E-value=4.7 Score=43.74 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=46.6
Q ss_pred CCcccccCcccc--eeeecccccccccCC---CCcccccccCCCCCccc-c----cCCCceeEecCCch---hhhhhhcc
Q 016340 125 RPTCSVCGTVEN--LWVCLICGFVGCGRY---KEGHAVRHWKDTQHWYS-L----DLRTQQIWDYVGDN---YVHRLNQS 191 (391)
Q Consensus 125 ~~~C~~C~~~~~--lwiCL~CG~vgCgr~---~~~HA~~H~~~t~H~~~-~----~l~t~~vwcy~cd~---~Vhrl~~~ 191 (391)
...|..||.++. +--|+.|+.-.|--. ...|...|...+.|.-. + ++++..+=||.|+. |+--.+..
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 356777777643 555777777766322 35788888877777532 2 35667777999974 66666778
Q ss_pred cccCCeecccC
Q 016340 192 KADGKLVEMNS 202 (391)
Q Consensus 192 k~dgklve~~~ 202 (391)
|.++..|=+..
T Consensus 91 ~~~~~~~~~cr 101 (802)
T 2xzl_A 91 KSEAVVVLLCR 101 (802)
T ss_dssp -----CEEEET
T ss_pred cCCceEEEEeC
Confidence 88887666654
No 183
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=47.23 E-value=19 Score=27.60 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=30.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+-...+.|.+..+|......+||..|.
T Consensus 58 ~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 58 KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 467887432224557889999999999999999999874
No 184
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.03 E-value=19 Score=27.22 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=30.9
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -.++-...+.|.+..+|+.....+||..|..
T Consensus 39 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 39 SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 567888421 1234568999999999999999999988754
No 185
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=46.76 E-value=13 Score=27.15 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=29.5
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
++|++..+ ..+-...+.|.+..+|+.-...+||..|..
T Consensus 37 v~i~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 37 DFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp EECCCBTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred EEecCCCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 45565333 345568899999999999999999998853
No 186
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.64 E-value=2.7e+02 Score=28.90 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 016340 322 EITSLRLRDATILDLEEQIR 341 (391)
Q Consensus 322 ~~~~~~~~~~~i~dL~EQ~r 341 (391)
.+...+..+.+|.+|+.+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34445566678888888754
No 187
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.63 E-value=97 Score=23.81 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 016340 298 ADVNSKLIKNQEIM 311 (391)
Q Consensus 298 ~~ln~~L~~nq~~~ 311 (391)
..-|+.|....+.+
T Consensus 51 e~rn~eL~~e~~~l 64 (81)
T 1wt6_A 51 EARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443333333
No 188
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.54 E-value=22 Score=27.18 Aligned_cols=40 Identities=8% Similarity=0.112 Sum_probs=30.3
Q ss_pred ccceeecC--CCCCceEEEEecCChhhHHHHHHHh-cCcccCC
Q 016340 2 SSNTVRND--AMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d--~~~~~y~vLlkF~~~~~A~~f~~~~-ng~~f~s 41 (391)
+++|+++. .-..+-...+.|.+..+|+.....+ ||..|..
T Consensus 44 ~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 44 TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 35677741 2234557889999999999999999 9988863
No 189
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=46.28 E-value=13 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=21.3
Q ss_pred ccccccCCcCCCCCCceee---cCCCcccchhhhc
Q 016340 76 TCPICLERLDPDTSGILST---ICDHSFQCSCTAK 107 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~---~C~H~F~~~Cl~~ 107 (391)
.||||...+++..-+...+ .|..=||..|+.-
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhcccc
Confidence 6999999887643211233 3667788888744
No 190
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.22 E-value=20 Score=26.79 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=30.1
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... ..+-...+.|.+..+|+.....+||..|.
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 44 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3567773221 34557889999999999999999998875
No 191
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.16 E-value=24 Score=26.88 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=31.2
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcc-cCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR-FSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~-f~s 41 (391)
+++|+++..-.++-...+.|.+.++|+.....+||.. |..
T Consensus 39 ~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 39 GGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp EEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred EEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 4678884322346678999999999999999999987 654
No 192
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.96 E-value=18 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=29.6
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++..-..+-...+.|.+.++|+.....+||..|.
T Consensus 42 v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 42 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45666422234557889999999999999999998875
No 193
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.94 E-value=18 Score=27.54 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=30.0
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+.++|+.....+||..|.
T Consensus 41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 41 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456777311 234667899999999999999999998875
No 194
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.92 E-value=98 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 293 AKKAVADVNSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 293 e~~~~~~ln~~L~~nq~~~~~~~~~le 319 (391)
|++.++.....|.+=+.++..-+.+++
T Consensus 26 El~sLrrT~~EL~~G~~KL~~mi~~l~ 52 (78)
T 3iv1_A 26 ELNALKRTEEDLKKGHQKLEEMVTRLD 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333333333333333333
No 195
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.92 E-value=16 Score=27.06 Aligned_cols=24 Identities=29% Similarity=0.791 Sum_probs=18.5
Q ss_pred CCcccccCcccce--eeeccccccccc
Q 016340 125 RPTCSVCGTVENL--WVCLICGFVGCG 149 (391)
Q Consensus 125 ~~~C~~C~~~~~l--wiCL~CG~vgCg 149 (391)
..+|..|.....+ +.| .||.+.|+
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCG 40 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECS
T ss_pred CCcChhhCCcccccCeEe-ecCCEecc
Confidence 4678888876443 679 89999997
No 196
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.88 E-value=97 Score=23.56 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHH
Q 016340 294 KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIR 341 (391)
Q Consensus 294 ~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~---~~~~~i~dL~EQ~r 341 (391)
+.++.-....|.+..+++......+..++..... ..+.+|.+|+++++
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444555555554444444444332222 23456777777765
No 197
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.83 E-value=81 Score=23.51 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 016340 247 ETQRQYYESL 256 (391)
Q Consensus 247 esQR~yyE~~ 256 (391)
.+||.|=|-+
T Consensus 18 ~AQRafReRK 27 (70)
T 1gd2_E 18 AAQRAFRKRK 27 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 198
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=45.31 E-value=99 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016340 228 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL 267 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~ 267 (391)
+.+++.+..+-.. |+.|+......+.....+++.+
T Consensus 6 r~qi~~l~~e~~~-----l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 6 RRQVDQLTNDKAR-----VEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655443 4455555666666666555543
No 199
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.54 E-value=13 Score=28.25 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.2
Q ss_pred ccceeecCCC----CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~----~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... ..+-...+.|.+.++|+.-...+||..|.
T Consensus 34 ~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 34 SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3567763221 34668899999999999999999998775
No 200
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.53 E-value=26 Score=26.57 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.2
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -..+-...+.|.+.++|......+||..|..
T Consensus 41 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 41 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456777321 1245578899999999999999999998753
No 201
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=44.49 E-value=24 Score=28.05 Aligned_cols=39 Identities=5% Similarity=-0.023 Sum_probs=30.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+-...+.|.+.++|......+||..|.
T Consensus 64 ~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 64 KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467777432224567899999999999999999999875
No 202
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.44 E-value=1.3e+02 Score=26.20 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHhHhHhhhhHHHhhc
Q 016340 327 RLRDATILDLEEQIRDLTVYIEAQKTLTN 355 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~le~q~ki~~ 355 (391)
+..-++|.+|+.++++..+- .+.++.+
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R~k--~~~em~K 142 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQRVK--RDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34446888899888887664 4455654
No 203
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.39 E-value=7.8 Score=29.67 Aligned_cols=28 Identities=25% Similarity=0.769 Sum_probs=16.9
Q ss_pred ccCCCccccccCCCCCcccccCcc--cceeeeccccc
Q 016340 111 LSCQVCRFCHQQDERPTCSVCGTV--ENLWVCLICGF 145 (391)
Q Consensus 111 ~~CP~Cr~~~~~~~~~~C~~C~~~--~~lwiCL~CG~ 145 (391)
..|+.|++-+ |..|... ...|+|.+|-.
T Consensus 43 ~~C~~Ck~rV-------C~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 43 NTCRGCNHLV-------CRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp SEETTTTEEC-------CTTSEEECSTTCEEEHHHHS
T ss_pred CcCcccChhh-------cccccccCCCCCEEEeeCch
Confidence 3566665543 5555532 36899998854
No 204
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=44.33 E-value=16 Score=26.61 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=28.8
Q ss_pred cceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++... ..+-...+.|.+.++|..-...+||..|.
T Consensus 37 v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 37 IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466663121 23556889999999999999999999875
No 205
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=44.12 E-value=23 Score=27.67 Aligned_cols=39 Identities=8% Similarity=0.222 Sum_probs=30.4
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+.++|+.....+||..|.
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 44 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46788842 2234567889999999999999999998775
No 206
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=43.99 E-value=1.2e+02 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 287 LDICEEAKKAVADVNSKLIKNQEIMRK 313 (391)
Q Consensus 287 l~~~~~e~~~~~~ln~~L~~nq~~~~~ 313 (391)
+..+..|+..|+.-|..|...-+.|+.
T Consensus 67 v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333444444445555554455543
No 207
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.84 E-value=23 Score=26.97 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=30.2
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+..+|......+||..|.
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 44 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 45677732 1234557899999999999999999998875
No 208
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=43.81 E-value=33 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=30.6
Q ss_pred cceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 3 SNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 3 ~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
++|+++.. -..+-...+.|.+.++|..-...+||..|..
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 67888422 2345578999999999999999999997753
No 209
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=43.61 E-value=33 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=11.8
Q ss_pred HHHHHHHHhhHHHHHHhHh
Q 016340 326 LRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlm 344 (391)
+..|+++|..|++...+|+
T Consensus 16 ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4455666777776666654
No 210
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.46 E-value=24 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=29.8
Q ss_pred cceeec-CCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRN-DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~-d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++ +.-..+-...+.|.+.++|......+||..|.
T Consensus 53 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 53 IHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp EECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred EEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 677773 12234557899999999999999999999875
No 211
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=43.38 E-value=1.6e+02 Score=25.44 Aligned_cols=9 Identities=22% Similarity=0.021 Sum_probs=5.4
Q ss_pred ceeEecCCc
Q 016340 174 QQIWDYVGD 182 (391)
Q Consensus 174 ~~vwcy~cd 182 (391)
..+|+|...
T Consensus 14 ~~~w~Y~~~ 22 (185)
T 3r2p_A 14 DLATVYVDV 22 (185)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHHH
Confidence 346777643
No 212
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=43.38 E-value=2.7e+02 Score=28.08 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSL 326 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~ 326 (391)
+-..+|+.++.-+++-...--..-+.|+.|++.+..+|+.||.....++
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555444443222113334567777777777777776544333
No 213
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.34 E-value=53 Score=31.70 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=10.0
Q ss_pred HHHhhHHHHHHhHhHhh
Q 016340 331 ATILDLEEQIRDLTVYI 347 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~l 347 (391)
.+|.+|+++|.+|+-.+
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666443
No 214
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.30 E-value=1e+02 Score=23.44 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhH
Q 016340 302 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 302 ~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q 350 (391)
.+|......+.+.+.+++.+....++..+..|..|+.++.++---++.|
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=42.90 E-value=17 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=30.6
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.+ .++=...+.|.+.++|+.-...+||..|.
T Consensus 34 ~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 34 SCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp EEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578888433 34556789999999999999999998774
No 216
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=42.89 E-value=20 Score=28.44 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 243 ATQLETQRQYYESLLA 258 (391)
Q Consensus 243 ~sqLesQR~yyE~~l~ 258 (391)
.|=+++.|.|||-.+.
T Consensus 13 ~sVie~ErIY~e~v~~ 28 (95)
T 3n7n_E 13 KAKLDSERIYNEYVQS 28 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4557899999998873
No 217
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.88 E-value=1.3e+02 Score=25.66 Aligned_cols=64 Identities=6% Similarity=0.043 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHh
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlm 344 (391)
...|.+-...+..|.+.=+.|.+.|..-....+..+.+.+..+.+. +.+-+++..++-.|+..|
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leey-K~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEY-KQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3333333344444433333444444444444444444444433322 233345556665555544
No 218
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.82 E-value=8.6 Score=29.80 Aligned_cols=55 Identities=24% Similarity=0.549 Sum_probs=30.4
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc-cccCCCccccccCCCCCcccccCcccceeeecccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICG 144 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~-~~~CP~Cr~~~~~~~~~~C~~C~~~~~lwiCL~CG 144 (391)
..||.|...+... .+ +.+|..|-.... ..-||.|... .-.|..||.. -+.|..|+
T Consensus 3 ~~CP~C~~~l~~~-~~-------~~~C~~C~~~~~~~afCPeCgq~-----Le~lkACGA~--~yFC~~C~ 58 (81)
T 2jrp_A 3 ITCPVCHHALERN-GD-------TAHCETCAKDFSLQALCPDCRQP-----LQVLKACGAV--DYFCQNGH 58 (81)
T ss_dssp CCCSSSCSCCEEC-SS-------EEECTTTCCEEEEEEECSSSCSC-----CCEEEETTEE--EECCTTTT
T ss_pred CCCCCCCCccccC-CC-------ceECccccccCCCcccCcchhhH-----HHHHHhcCCc--CeeeccCC
Confidence 5799999887652 22 223555554432 4578888542 2236666643 44455553
No 219
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=42.58 E-value=2.1e+02 Score=26.57 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 016340 236 DEYNRLLATQL 246 (391)
Q Consensus 236 ~Ey~~ll~sqL 246 (391)
.+...-|...+
T Consensus 36 ~~l~~~l~~~l 46 (273)
T 3s84_A 36 NEVSQKIGDNL 46 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 220
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=42.53 E-value=6.6 Score=42.59 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCcccccCcccc--eeeecccccccccCC---CCcccccccCCCCCccc-c----cCCCceeEecCCch---hhhhhhcc
Q 016340 125 RPTCSVCGTVEN--LWVCLICGFVGCGRY---KEGHAVRHWKDTQHWYS-L----DLRTQQIWDYVGDN---YVHRLNQS 191 (391)
Q Consensus 125 ~~~C~~C~~~~~--lwiCL~CG~vgCgr~---~~~HA~~H~~~t~H~~~-~----~l~t~~vwcy~cd~---~Vhrl~~~ 191 (391)
...|..||.++. +-.|+.|+.-.|--. ...|...|...+.|.-. + ++++..+=||.|+. |+--.+..
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 356777777643 555777777766322 35788888777776532 2 34566777999974 66666778
Q ss_pred cccCCeecccC
Q 016340 192 KADGKLVEMNS 202 (391)
Q Consensus 192 k~dgklve~~~ 202 (391)
|.++..|=+-.
T Consensus 86 ~~~~~~~~~~~ 96 (800)
T 2wjy_A 86 KADSVVVLLCR 96 (800)
T ss_dssp ----CCEECCT
T ss_pred ccCceEEEEec
Confidence 88887766654
No 221
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.29 E-value=1.1e+02 Score=23.30 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 296 AVADVNSKLIKNQEIMRKKFKE 317 (391)
Q Consensus 296 ~~~~ln~~L~~nq~~~~~~~~~ 317 (391)
.+.+|-..|..++..+.+.+.-
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444433
No 222
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.27 E-value=12 Score=27.91 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=20.5
Q ss_pred CCCcccccCcccce-----eeecccccccccC
Q 016340 124 ERPTCSVCGTVENL-----WVCLICGFVGCGR 150 (391)
Q Consensus 124 ~~~~C~~C~~~~~l-----wiCL~CG~vgCgr 150 (391)
...+|..|.....| +.| .||.+.|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 34688899887765 579 899999973
No 223
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.19 E-value=1.1e+02 Score=23.33 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 016340 245 QLETQRQYYESLLAEAKSKR 264 (391)
Q Consensus 245 qLesQR~yyE~~l~~~~~~~ 264 (391)
.|.+|+...|..|.+++...
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~ 26 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSL 26 (86)
T ss_dssp -----CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777666544
No 224
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.17 E-value=52 Score=27.44 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 016340 284 QNELDICEEAK 294 (391)
Q Consensus 284 ~~~l~~~~~e~ 294 (391)
+..|+.-+.++
T Consensus 50 qsele~k~aeL 60 (125)
T 2pms_C 50 QSKLDAKKAKL 60 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344333333
No 225
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.93 E-value=6.6 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=18.6
Q ss_pred CCCccccccCCcCCC-CCCceeecCCCcccchh
Q 016340 73 ELPTCPICLERLDPD-TSGILSTICDHSFQCSC 104 (391)
Q Consensus 73 E~~tCpiCle~ld~~-~~g~it~~C~H~F~~~C 104 (391)
...+|.+|+..|... .+|.+=..|.|.+|..|
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C 99 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSC 99 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGG
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccc
Confidence 478999999976431 22333344555555444
No 226
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.75 E-value=1.9e+02 Score=29.18 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHhHhHhh
Q 016340 328 LRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf~l 347 (391)
....+|..|+..+..++-..
T Consensus 179 ~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 179 SLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34456667777666665543
No 227
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=41.69 E-value=26 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.3
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -..+-...+.|.+..+|......+||..|..
T Consensus 55 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 55 SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356777422 1235578899999999999999999987753
No 228
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.66 E-value=19 Score=26.61 Aligned_cols=24 Identities=38% Similarity=0.952 Sum_probs=18.1
Q ss_pred CCcccccCcccce--eeeccccccccc
Q 016340 125 RPTCSVCGTVENL--WVCLICGFVGCG 149 (391)
Q Consensus 125 ~~~C~~C~~~~~l--wiCL~CG~vgCg 149 (391)
..+|..|.....+ +.| .||.+.|+
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTFCG 40 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEECT
T ss_pred CCcChhhCCccCccCEEe-ecCCEecc
Confidence 4678888875443 679 69999997
No 229
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=41.33 E-value=27 Score=27.24 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=30.2
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-.++-...+.|.+..+|+.....+||..|.
T Consensus 54 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 54 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46778842 1234557889999999999999999998775
No 230
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.16 E-value=73 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 294 KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 294 ~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
...|+++|..|.....+ ||. ....++++|..|..-++|--.
T Consensus 13 ~~kLKq~n~~L~~kv~~-------Le~----~c~e~eQEieRL~~LLkqHgl 53 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQH-------LEF----SCSEKEQEIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 34456777777664443 332 344556677777777766433
No 231
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=41.13 E-value=9 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.687 Sum_probs=19.5
Q ss_pred CCCCccccccC-CcCCCCCCceeecCCCcccchhhhc
Q 016340 72 TELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 72 ~E~~tCpiCle-~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
-+.++|+||+- .|.+. .|-+=.-|.-.||..|-..
T Consensus 7 ~d~~~C~iC~KTKFADG-~Gh~C~yCk~r~CaRCGg~ 42 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG-CGHNCSYCQTKFCARCGGR 42 (62)
T ss_dssp SCCCCCSSSSCSCCCSS-CCEEBTTTCCEECTTSEEE
T ss_pred CCcchhhhhccceeccC-CCccccccCCeeecccCCE
Confidence 45789999996 46553 2323233445555555433
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.12 E-value=24 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=29.8
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-..+=...+.|.+.++|..-.. +||..|.
T Consensus 38 ~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 38 AIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred EEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 4678884222245678999999999999999 9998775
No 233
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.56 E-value=12 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCCCccccccCCcCCCCCCceeec---CCCcccchhhhc
Q 016340 72 TELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAK 107 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~---C~H~F~~~Cl~~ 107 (391)
.+...||+|...+++. + ..+. |..=||..|+.-
T Consensus 4 ~e~~~C~~C~~~~~~~--~-~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAAD--E-FWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSS--S-CEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCC--C-CEEEccCCCCCCCccccCc
Confidence 3566899999887543 2 2333 455677777643
No 234
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.37 E-value=26 Score=26.68 Aligned_cols=40 Identities=30% Similarity=0.214 Sum_probs=30.5
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++. .-.++-...+.|.+..+|..-...+||..|..
T Consensus 37 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (104)
T 1p1t_A 37 SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 77 (104)
T ss_dssp EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS
T ss_pred EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45677731 12246678899999999999999999998853
No 235
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=40.27 E-value=29 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.9
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++....++=...+.|.+.++|......+||..|.
T Consensus 29 ~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 29 NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 367777433345667899999999999999999999874
No 236
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.23 E-value=1.5e+02 Score=24.26 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHhH
Q 016340 308 QEIMRKKFKEIEEREITSLRLRDA---TILDLEEQIRDL 343 (391)
Q Consensus 308 q~~~~~~~~~le~~~~~~~~~~~~---~i~dL~EQ~rDl 343 (391)
+..++.++.+|+.++......++. +.+.|+.++.++
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777665544432 344454444443
No 237
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.54 E-value=23 Score=26.38 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=29.3
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+.++|+.....+||..|.
T Consensus 45 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 45 KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 356666321 123556889999999999999999998875
No 238
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=39.54 E-value=1.8e+02 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016340 298 ADVNSKLIKNQEIMRKKFKEI 318 (391)
Q Consensus 298 ~~ln~~L~~nq~~~~~~~~~l 318 (391)
.++...+.+|.+.++.++.=+
T Consensus 103 ~e~~~~~~~~~e~lr~~l~Py 123 (185)
T 3r2p_A 103 DDFQKKWQEEMELYRQKVEPL 123 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555555555433
No 239
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=39.49 E-value=5.6 Score=43.48 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.7
Q ss_pred cccccC----cccceeeecccccccccCCCCcccccccCCCCCccccc
Q 016340 127 TCSVCG----TVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLD 170 (391)
Q Consensus 127 ~C~~C~----~~~~lwiCL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~ 170 (391)
-|..|. ....+.|||.|-.-+| ..|+..||..++|++.+.
T Consensus 48 eC~~~f~~~~~~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~ 91 (854)
T 3ihp_A 48 ECAFSFDTPESEGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLH 91 (854)
T ss_dssp SCSSSSCCTTSTTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEE
T ss_pred cCceecCCCCCCCCeEEccccccccc----HHHHHHHHhccCCceEEE
Confidence 455544 2346999999988777 389999999999998663
No 240
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=39.26 E-value=36 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=30.4
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -..+-...+.|.+.++|+.....+||..|..
T Consensus 75 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 75 DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357777322 1345578899999999999999999988753
No 241
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.99 E-value=1.3e+02 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 281 QDIQNELDICEEAKKAVADVNSKL 304 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~~~~ln~~L 304 (391)
.+|...++...+|...+++-|+.|
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 242
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.72 E-value=25 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=23.1
Q ss_pred EEEEecCChhhHHHHHHHhcCcccC
Q 016340 16 SVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 16 ~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
...+.|.+..+|+.....+||..|.
T Consensus 46 ~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTTEEET
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeC
Confidence 6889999999999999999999875
No 243
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.65 E-value=1.6e+02 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=13.5
Q ss_pred HHHHhhHHHHHHhHhHhhhhHHH
Q 016340 330 DATILDLEEQIRDLTVYIEAQKT 352 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~q~k 352 (391)
+.+|.+|..+|+|...-++-..+
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666665554433
No 244
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.64 E-value=9.1 Score=32.31 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=16.7
Q ss_pred CCCccccccCCcCC-CCCCceeecCCCcccc
Q 016340 73 ELPTCPICLERLDP-DTSGILSTICDHSFQC 102 (391)
Q Consensus 73 E~~tCpiCle~ld~-~~~g~it~~C~H~F~~ 102 (391)
...+|.+|...|.- ..+|.+=..|.|.+|.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~ 84 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCT 84 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEET
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccc
Confidence 46789999998742 2233232334444443
No 245
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.56 E-value=22 Score=27.04 Aligned_cols=25 Identities=28% Similarity=0.764 Sum_probs=18.5
Q ss_pred CCcccccCcccce--eeecccccccccC
Q 016340 125 RPTCSVCGTVENL--WVCLICGFVGCGR 150 (391)
Q Consensus 125 ~~~C~~C~~~~~l--wiCL~CG~vgCgr 150 (391)
..+|..|.....+ +.| .||.+.|+.
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred CccchhhcCcccccceEe-ccCCEeccc
Confidence 4678888765443 679 799999973
No 246
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=38.55 E-value=49 Score=25.12 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEE-AKKAVADVNSKLI 305 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~-e~~~~~~ln~~L~ 305 (391)
.++..|+.+|+..+. .++|+ .|.++|+
T Consensus 19 ~kv~~LQ~eLdtsE~VQrDFV-kLSQsLQ 46 (79)
T 1tu3_F 19 NKAQRLQTELDVSEQVQRDFV-KLSQTLQ 46 (79)
T ss_dssp --CHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455556666665443 23333 3444443
No 247
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.46 E-value=1.1e+02 Score=22.67 Aligned_cols=15 Identities=7% Similarity=0.299 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEE 292 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~ 292 (391)
..+.+|+.++..++.
T Consensus 29 ~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 29 DHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544443
No 248
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=38.41 E-value=29 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=29.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|++ |+.. +-...+.|.+..+|..-...+||..|.
T Consensus 37 ~v~i~~-~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 37 QIRVGN-TPET-RGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp EEEEEC-STTT-TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEee-CCCC-CcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356777 4433 556789999999999999999999875
No 249
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=38.27 E-value=1.6e+02 Score=28.03 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016340 234 IVDEYNRLLATQLET 248 (391)
Q Consensus 234 ~~~Ey~~ll~sqLes 248 (391)
+..|++.|++.-++.
T Consensus 64 l~kel~~l~~~~~~e 78 (307)
T 2l7b_A 64 VTQELRALMDETMKE 78 (307)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566655544444
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=38.26 E-value=33 Score=25.53 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=29.2
Q ss_pred cceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++... ..+-...+.|.+.++|......+||..|.
T Consensus 45 ~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 45 SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 466663322 24556889999999999999999998875
No 251
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=38.16 E-value=19 Score=26.36 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=29.1
Q ss_pred cceeecCCCC--CceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAME--DRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~--~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++.... .+-...+.|.+..+|+.-...+||..|.
T Consensus 34 ~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 34 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 4566632211 4557889999999999999999998875
No 252
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.13 E-value=33 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.521 Sum_probs=19.4
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
....|.||.+- .. -+.=-.|...||..|+..
T Consensus 8 ~~~~C~vC~~~-g~---ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKDG-GE---LLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCCC-SS---CBCCSSSCCCBCSSSSSS
T ss_pred CCCcCCCCCCC-CC---EEEcCCCCHHHcccccCC
Confidence 46679999852 11 011124788999999863
No 253
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=38.09 E-value=15 Score=29.79 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=30.1
Q ss_pred ccceeecCCC-----CCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~-----~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++... +.+=-+-++|.+..+|..-...+||+.|..
T Consensus 54 ~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 54 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4677773211 123468899999999999999999999953
No 254
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.03 E-value=18 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.527 Sum_probs=22.5
Q ss_pred CCCCCCCCccccccCCcCCCCCCcee--ecCCCcccchhhh
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILS--TICDHSFQCSCTA 106 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it--~~C~H~F~~~Cl~ 106 (391)
.+...+...|.||..--... .+.+. -.|.-.||..|+.
T Consensus 19 ~~~~~~~~~C~vC~~~~s~~-~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 19 QSLIDEDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp TCCCCCCCCCSSCCSSSSCS-EEEEEECSSSCCCCCHHHHT
T ss_pred CCcCCCCCcCCcCCCCCCCC-CCCEEECCCCCchhhcccCC
Confidence 33445678999999754111 11121 2467789988873
No 255
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=38.02 E-value=31 Score=26.60 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=29.5
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|......+||..|.
T Consensus 55 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 55 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356666321 224567889999999999999999998875
No 256
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.92 E-value=49 Score=32.90 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=3.5
Q ss_pred HHhhHHHH
Q 016340 332 TILDLEEQ 339 (391)
Q Consensus 332 ~i~dL~EQ 339 (391)
++.||++.
T Consensus 53 ~~~~l~gn 60 (412)
T 3u06_A 53 TVMDLRDN 60 (412)
T ss_dssp HHHHHTCS
T ss_pred HHHHhCCC
Confidence 44444443
No 257
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=37.88 E-value=16 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.2
Q ss_pred EEEecCChhhHHHHHHHhcCcccCCCCcccceEEEEeEEEEe
Q 016340 17 VLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYT 58 (391)
Q Consensus 17 vLlkF~~~~~A~~f~~~~ng~~f~s~e~e~C~v~~v~~v~~~ 58 (391)
+-|.|.+.+++.+|...|+|..|-.-.. ..+...|++.
T Consensus 48 aYi~f~~~e~v~~f~~~~~g~~F~D~kg----~~~~a~VE~A 85 (91)
T 1uw4_A 48 AYINFKNQEDIILFRDRFDGYVFLDNKG----QEYPAIVEFA 85 (91)
T ss_dssp EEEEESSSHHHHHHHHHHTTCEEECTTC----CEEECEEEEC
T ss_pred EEEEeCCHHHHHHHHHHhCCcEEEcCCC----CEeeeEEEEc
Confidence 5789999999999999999999965432 2455556654
No 258
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.84 E-value=1.7e+02 Score=29.37 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHHHhHhHhh
Q 016340 326 LRLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~rDlmf~l 347 (391)
++..+++..++++++.+++.-|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 85 IGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444567778888888877755
No 259
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.80 E-value=34 Score=25.86 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=29.9
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
.++|+++... .++-...+.|.+.++|+.....+||..|.
T Consensus 41 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 41 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3577773222 23557889999999999999999998775
No 260
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=37.69 E-value=23 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=28.9
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|++ | ++-...+.|.+.++|+.-...+||..|.
T Consensus 29 ~v~i~~-~---~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 29 TVWIAR-N---PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp EEEEES-S---SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred EEEEee-C---CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 456777 3 4557899999999999999999998775
No 261
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=37.52 E-value=1.3e+02 Score=23.44 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=13.9
Q ss_pred HhhHHHHHHhHhHhhhh
Q 016340 333 ILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 333 i~dL~EQ~rDlmf~le~ 349 (391)
.+++++.+-||+|++-.
T Consensus 60 ~~~i~eELgDvLf~lv~ 76 (95)
T 1vmg_A 60 LDSIQEELADVIAWTVS 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35788999999999854
No 262
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.47 E-value=18 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=24.9
Q ss_pred CCccccccCCcCCCCCCcee--ecCCCcccchhhhccc------cccCCCccccc
Q 016340 74 LPTCPICLERLDPDTSGILS--TICDHSFQCSCTAKWT------VLSCQVCRFCH 120 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it--~~C~H~F~~~Cl~~w~------~~~CP~Cr~~~ 120 (391)
...|.||..- |-+. -.|...||..|+.... ...||.|+...
T Consensus 7 ~~~C~~C~~~------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG------GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC------EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC------CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4569999742 2121 2377899999985421 34677776543
No 263
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.39 E-value=96 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 277 ASKMQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
+...++|+..+++++.++...++-++.+.+
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345667777777777766555544444443
No 264
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.17 E-value=37 Score=26.44 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=29.8
Q ss_pred cceeecCCC----CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~----~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++... .++-...+.|.+.++|+.-...+||..|.
T Consensus 48 v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 48 VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 567773222 24568899999999999999999999874
No 265
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.15 E-value=26 Score=26.54 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=29.3
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++ ... |-...+.|.+.++|..-...+||..|.
T Consensus 42 ~v~i~~~-~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 42 SVELSPH-TDY-QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp EEEECSC-CST-TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEEeC-CCC-CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4577773 322 546899999999999999999998875
No 266
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.04 E-value=24 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.8
Q ss_pred EEEEecCChhhHHHHHHHhcCcccC
Q 016340 16 SVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 16 ~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
...+.|.+.++|+.....+||..|.
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCHHHHHHHHHHhCCCEEC
Confidence 6789999999999999999998775
No 267
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=37.01 E-value=37 Score=25.23 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++... .++=...+.|.+..+|+.-...+||..|..
T Consensus 32 ~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 32 EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 5678884212 235568899999999999999999987753
No 268
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=36.21 E-value=25 Score=28.27 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=29.9
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-.++-...+.|.+.++|+.....+||..|.
T Consensus 92 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 92 DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677731 1234667889999999999999999998775
No 269
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.02 E-value=12 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=24.0
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCcccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~ 119 (391)
|.|+.|-..+.+. . ....-+..||..|. .|..|...
T Consensus 1 p~C~~C~~~I~~~--~-~v~a~~~~~H~~CF------~C~~C~~~ 36 (76)
T 1iml_A 1 PKCPKCDKEVYFA--E-RVTSLGKDWHRPCL------KCEKCGKT 36 (76)
T ss_dssp CBCTTTSSBCCGG--G-EEEETTEEEETTTC------BCTTTCCB
T ss_pred CcCCCCCCEEECc--e-EEEECCccccCCCC------CccccCcc
Confidence 6899999887532 1 23334888888874 67777653
No 270
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.81 E-value=17 Score=28.42 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=21.5
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhh
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCT 105 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl 105 (391)
....+...|.||...-++. .-++=-.|...||..|+
T Consensus 11 ~~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl 46 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCL 46 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSS
T ss_pred hhccCCCCCccCCCcCCCC-CEEEcCCCCchhccccC
Confidence 3445677899999765421 11111236778888886
No 271
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.45 E-value=58 Score=25.04 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 308 QEIMRKKFKEIEEREI 323 (391)
Q Consensus 308 q~~~~~~~~~le~~~~ 323 (391)
.+.++..+..+|.++.
T Consensus 30 l~~~q~~i~~lE~el~ 45 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMA 45 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444554443
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.39 E-value=33 Score=25.63 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=26.2
Q ss_pred eeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 5 TVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 5 ~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
|++ |....+ ..+.|.+..+|..-...+||..|.
T Consensus 48 i~~-~~~~~~--afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 48 VNT-DSETAV--VNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp ECC-SSSSEE--EEEEESSHHHHHHHHHHHTTCBCS
T ss_pred eec-CCCCCE--EEEEECCHHHHHHHHHHhCCCEEC
Confidence 555 433333 999999999999999999998875
No 273
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=35.05 E-value=2.2e+02 Score=24.49 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRL 241 (391)
Q Consensus 228 ~~K~e~~~~Ey~~l 241 (391)
..|+.++..++..+
T Consensus 5 ~~~~~~l~~~~~~~ 18 (284)
T 1c1g_A 5 KKKMQMLKLDKENA 18 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 45666666666554
No 274
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=35.02 E-value=28 Score=27.19 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=29.6
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|+.....+||..|.
T Consensus 69 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 69 SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356777321 234567889999999999999999998774
No 275
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.93 E-value=30 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=18.2
Q ss_pred ccccccCCcCCCCCCceeecCCCcccchhhh
Q 016340 76 TCPICLERLDPDTSGILSTICDHSFQCSCTA 106 (391)
Q Consensus 76 tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~ 106 (391)
.|.||...-+.. .-+.=-.|...||..|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCC
Confidence 588888654321 111222477899999985
No 276
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.90 E-value=30 Score=26.36 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=29.3
Q ss_pred cceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+++.. -.++-...+.|.+.++|+.....+||..|.
T Consensus 43 v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 43 VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 56666322 224567889999999999999999998875
No 277
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=34.89 E-value=34 Score=26.04 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=29.1
Q ss_pred ccceeecC--CCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d--~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++. .-..+-...+.|.+..+|+... .+||..|..
T Consensus 47 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 47 AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp EEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred EEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 45677742 1224556889999999999999 999988754
No 278
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.88 E-value=25 Score=27.27 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=26.8
Q ss_pred CCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 68 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 68 ~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
+++..+...|.+|...|.....---=-.||..||..|...
T Consensus 3 ~~~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 3 SGSSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4455677899999999875311111245888898888654
No 279
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.77 E-value=40 Score=25.07 Aligned_cols=45 Identities=24% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 65 STPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 65 ~~~~~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
+..|......+.|+.|-..+.+.. ....-+..||..|+ .|..|..
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~~---~v~a~~~~wH~~CF------~C~~C~~ 50 (80)
T 2dj7_A 6 SGKPIKIRGPSHCAGCKEEIKHGQ---SLLALDKQWHVSCF------KCQTCSV 50 (80)
T ss_dssp CCCCCCCSSCSCCTTTCCCCSSSC---CEEETTEEECTTTC------BCSSSCC
T ss_pred CCCCcCCCCCCCCcCcCCeeCCCe---EEEECCcccccccC------CcCcCCC
Confidence 344555667899999999875321 23335778888774 6777755
No 280
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.43 E-value=1.6e+02 Score=22.66 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016340 281 QDIQNELDICEEAKKA 296 (391)
Q Consensus 281 ~~l~~~l~~~~~e~~~ 296 (391)
..|..+..++..++..
T Consensus 38 kele~~~~~l~~ek~~ 53 (89)
T 3bas_A 38 KELEEQNVTLLEQKND 53 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 281
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.10 E-value=2.2e+02 Score=24.24 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKN 307 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~n 307 (391)
.+.+....|..-.++++.+..+-+....+
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~ 111 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQN 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444344444443333333333
No 282
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.91 E-value=1.6e+02 Score=25.71 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHH-------
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT------- 352 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~k------- 352 (391)
+++|+.-+.++-..... .+-+.|-.+|..++.-++.-++.+..-....+..+..|+.+..+|.-.++.-+.
T Consensus 14 l~~Lq~~i~~l~~~~~~--~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 14 LQNLQTVVNELYREDVD--YVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCCCCcCCcEEeecCCC
Q 016340 353 LTNMTDSDGIKGGTVLPVSYQ 373 (391)
Q Consensus 353 i~~~~~~~ei~~g~i~~~~~~ 373 (391)
+......+.+.=..+++++++
T Consensus 92 ~~~~~~~~~~diD~~v~~~~~ 112 (174)
T 2p22_A 92 FSSTSHVDDEDVNSIAVAKTD 112 (174)
T ss_dssp HTTSSCCCSSCGGGTEECSSH
T ss_pred HHhcCCCCCCChhhhhcCCcH
No 283
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=33.78 E-value=42 Score=26.39 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=30.4
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..+ ..+=...+.|.+.++|+.-...+||..|.
T Consensus 35 ~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 35 EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678884321 24556789999999999999999999874
No 284
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.61 E-value=50 Score=24.82 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=28.8
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|+.... +||..|.
T Consensus 39 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 39 EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp EEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred EEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 356777321 2346678999999999999998 9998775
No 285
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.58 E-value=1.6e+02 Score=22.66 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=4.0
Q ss_pred HhhHHHHHHh
Q 016340 333 ILDLEEQIRD 342 (391)
Q Consensus 333 i~dL~EQ~rD 342 (391)
..+|=+++++
T Consensus 72 L~elae~~q~ 81 (83)
T 1uii_A 72 LAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 286
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=33.08 E-value=35 Score=26.08 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.8
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -.++=...+.|.+..+|..-...+||..|..
T Consensus 41 ~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 41 NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 467787432 2245567899999999999999999998853
No 287
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.74 E-value=39 Score=25.69 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=29.7
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
.++|+++. .-..+-...+.|.+.++|+.....+||..|..
T Consensus 44 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 44 NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35667732 12245468899999999999999999987753
No 288
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=32.61 E-value=54 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=29.8
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -.++-...+.|.+..+|......+||..|.
T Consensus 52 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 52 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 356777322 123557889999999999999999998775
No 289
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.33 E-value=27 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=15.2
Q ss_pred cCCCcccchhhhccccccCC
Q 016340 95 ICDHSFQCSCTAKWTVLSCQ 114 (391)
Q Consensus 95 ~C~H~F~~~Cl~~w~~~~CP 114 (391)
.|++.||..|...|-...|.
T Consensus 55 ~C~~~FC~~C~~~wH~~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHEGECS 74 (80)
T ss_dssp CCSCCEETTTTEECCSSCSS
T ss_pred CCCCeeccccCccccCCccc
Confidence 58999999999888434443
No 290
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.32 E-value=9.3 Score=33.02 Aligned_cols=41 Identities=22% Similarity=0.656 Sum_probs=27.1
Q ss_pred Ccccchhhhccc-----cccCCCccccccCCCCCcccccCc---ccceeeeccccc
Q 016340 98 HSFQCSCTAKWT-----VLSCQVCRFCHQQDERPTCSVCGT---VENLWVCLICGF 145 (391)
Q Consensus 98 H~F~~~Cl~~w~-----~~~CP~Cr~~~~~~~~~~C~~C~~---~~~lwiCL~CG~ 145 (391)
...|..|....+ ...|..|.+.+ |..|+. .+..|+|.+|-.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V-------C~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV-------CKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE-------CGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchh-------hcccccccCCCCcEeeHHHHH
Confidence 455666766542 45788887754 777763 357999998844
No 291
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=32.31 E-value=36 Score=27.89 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=30.9
Q ss_pred ccceeecCCC---CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~---~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... .++-...+.|.+.++|+.....+||..+.
T Consensus 32 ~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 4678884333 35667899999999999999999998764
No 292
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=32.18 E-value=1.8e+02 Score=22.59 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.0
Q ss_pred HHHhhHHHHHHhHh
Q 016340 331 ATILDLEEQIRDLT 344 (391)
Q Consensus 331 ~~i~dL~EQ~rDlm 344 (391)
.++++|++++.+|-
T Consensus 70 ~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 70 RRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666666553
No 293
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.16 E-value=31 Score=27.68 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=8.6
Q ss_pred cCCCcccchhhh
Q 016340 95 ICDHSFQCSCTA 106 (391)
Q Consensus 95 ~C~H~F~~~Cl~ 106 (391)
.|...||..|+.
T Consensus 82 ~C~~~yH~~Cl~ 93 (112)
T 3v43_A 82 SCDRGFHMECCD 93 (112)
T ss_dssp TTCCEECGGGCS
T ss_pred CCCCeeecccCC
Confidence 367778888874
No 294
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=32.14 E-value=2.5e+02 Score=24.22 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhHhhhhH-HHh-hccCCCCCcCCcEEe
Q 016340 313 KKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ-KTL-TNMTDSDGIKGGTVL 368 (391)
Q Consensus 313 ~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q-~ki-~~~~~~~ei~~g~i~ 368 (391)
..+..+.++.....+.....|+.|+..|.. |.++. ..+ .+ ...-++..|+|-
T Consensus 41 ~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~---y~e~~r~elf~k-~Kt~~l~~G~v~ 94 (171)
T 2p2u_A 41 EAIDAAKARASQKSAPLLARRKELEDGVAT---FATLNKTEMFKD-RKSLDLGFGTIG 94 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHCC----CCBCSSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhcCC-CeEEEeCCEEEE
Confidence 334444444444455555566666665543 22232 333 21 112356677763
No 295
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.90 E-value=46 Score=24.89 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=29.1
Q ss_pred cceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++++++.. ..+-...+.|.+.++|+.....+||..|.
T Consensus 45 ~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 45 SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 456664322 23567889999999999999999998774
No 296
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.87 E-value=37 Score=26.20 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=27.2
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|++ | +-...+.|.+..+|......+||..|.
T Consensus 55 v~i~~-~----~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 55 IRVFP-E----KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp EEEET-T----TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeC-C----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45666 2 446889999999999999999998775
No 297
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.30 E-value=59 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 70 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 70 ~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
.....+.|..|...+... ....-+..||..|. .|-.|..
T Consensus 21 ~~~~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF------~C~~C~~ 59 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA----VVKARDKYRHPECF------VCADCNL 59 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC----CEESSSCEECTTTC------CCSSSCC
T ss_pred CCCcCCCcccCCCEeccc----EEEECCceECccCC------EecCCCC
Confidence 345678899999987642 33346788888874 6777755
No 298
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.88 E-value=2e+02 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHhH
Q 016340 330 DATILDLEEQIRDL 343 (391)
Q Consensus 330 ~~~i~dL~EQ~rDl 343 (391)
+.++..|++||.|-
T Consensus 82 e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 82 EILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 35788899999884
No 299
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.67 E-value=57 Score=24.19 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=26.4
Q ss_pred CCCCCCCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCccc
Q 016340 69 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 118 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~ 118 (391)
......+.|+.|...+.+. . ....-+..||..|. .|-.|..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~-e--~v~a~~~~wH~~CF------~C~~C~~ 50 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVL-E--RLCVNGHFFHRSCF------RCHTCEA 50 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTT-T--BCCBTTBCCBTTTC------BCSSSCC
T ss_pred cCCCCCCCCcccCCCcccc-e--EEEECCCeeCCCcC------EEcCCCC
Confidence 3444678999999987431 1 22245778888874 6666654
No 300
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.58 E-value=1.3e+02 Score=28.86 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=4.7
Q ss_pred CCcEEeecCC
Q 016340 363 KGGTVLPVSY 372 (391)
Q Consensus 363 ~~g~i~~~~~ 372 (391)
..|--.+.|+
T Consensus 86 ~SGvY~I~p~ 95 (323)
T 1lwu_C 86 DSGLYYIKPL 95 (323)
T ss_dssp SSEEEEECCT
T ss_pred CCeEEEEecC
Confidence 4454455543
No 301
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.54 E-value=1.7e+02 Score=21.86 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHhH
Q 016340 292 EAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 345 (391)
Q Consensus 292 ~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~EQ~rDlmf 345 (391)
.|+..+.+--+.|.+..+.+-.++..+|..... .+.+...|...|.+++.
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~----~e~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQE----NEGENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHh
Confidence 333333333334444444555555555543221 12234556666666665
No 302
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=30.49 E-value=50 Score=26.65 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=29.8
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... .++-...+.|.+.++|+.....+||..|.
T Consensus 31 ~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 70 (167)
T 1fxl_A 31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 70 (167)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 4677774211 23456889999999999999999998875
No 303
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=30.36 E-value=45 Score=26.30 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=29.2
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-.++-...+.|.+..+|......+||..|.
T Consensus 51 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 51 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 35667632 1123546789999999999999999999875
No 304
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=30.18 E-value=84 Score=27.72 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 016340 303 KLIKNQEIMRKKFK 316 (391)
Q Consensus 303 ~L~~nq~~~~~~~~ 316 (391)
.+..|.+.++.++.
T Consensus 125 ~l~~~~Eelr~~L~ 138 (191)
T 1nfn_A 125 MLGQSTEELRVRLA 138 (191)
T ss_dssp TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33344444444443
No 305
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.12 E-value=29 Score=27.31 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=17.5
Q ss_pred CCCccccccCCcCCCCCCceeec---CCCcccchhhh
Q 016340 73 ELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTA 106 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~---C~H~F~~~Cl~ 106 (391)
+...| ||-...+. | ..+. |..-||..|+.
T Consensus 27 d~vrC-iC~~~~~~---~-~mi~Cd~C~~w~H~~C~~ 58 (98)
T 2lv9_A 27 DVTRC-ICGFTHDD---G-YMICCDKCSVWQHIDCMG 58 (98)
T ss_dssp CBCCC-TTSCCSCS---S-CEEEBTTTCBEEETTTTT
T ss_pred CCEEe-ECCCccCC---C-cEEEcCCCCCcCcCcCCC
Confidence 45678 89766553 2 2333 55677777763
No 306
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.11 E-value=2e+02 Score=28.35 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHhhHHHHHHhHhHhh
Q 016340 327 RLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~l 347 (391)
+..+++..++++++.+++.-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 81 KRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344556777788888777654
No 307
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.92 E-value=1.9e+02 Score=22.13 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 301 NSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 301 n~~L~~nq~~~~~~~~~le 319 (391)
|+.|.+..+..+..+..++
T Consensus 36 N~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333
No 308
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.85 E-value=2.3e+02 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 016340 312 RKKFKEIEEREITSLRLRDATILDLEE 338 (391)
Q Consensus 312 ~~~~~~le~~~~~~~~~~~~~i~dL~E 338 (391)
+..+..+-...+..++..+.+|...++
T Consensus 70 k~~y~~l~k~Y~~~~keLd~~ik~qek 96 (119)
T 3etw_A 70 KSQYQELASKYEDALKKLEAEMEQQKA 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 309
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=29.71 E-value=51 Score=27.09 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred CccceeecCCCCCceEEEEecCChhhHHHHHHHhcCc
Q 016340 1 MSSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 37 (391)
Q Consensus 1 ~~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~ 37 (391)
|+++|++| +...+=-.++.|.+...|+.-...+||.
T Consensus 1 ~~~kl~ln-~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 1 MQYKLILN-GKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEE-CSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcEEEEec-CccccchhHHHHHHHHhHHHHHHhhccc
Confidence 78999995 5556656679999999999999988864
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=29.70 E-value=33 Score=29.92 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++ ...++-...+.|.+.++|..-...+||..|+
T Consensus 132 ~~~i~~d-~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 132 SCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp EEEEEEE-TTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeecc-CCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4678884 3346778899999999999999999998774
No 311
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.68 E-value=59 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 303 KLIKNQEIMRKKFKEIEEREITSLR 327 (391)
Q Consensus 303 ~L~~nq~~~~~~~~~le~~~~~~~~ 327 (391)
.+....+.++..+..+|..+..+..
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556556655544433
No 312
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=29.62 E-value=3.8e+02 Score=25.67 Aligned_cols=92 Identities=10% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 249 QRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 328 (391)
Q Consensus 249 QR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~ 328 (391)
...||..+...+..+....+.+.+ ..+...+...+.+.+++..++. .+...|......+......+... +..
T Consensus 102 f~syy~~L~~~~d~~d~~~l~~~L-~~L~~~i~~~q~~~~~~~~~L~---~F~~~l~~d~~~f~~~~~~l~~~----L~~ 173 (346)
T 2nrj_A 102 FDNYYETMVEAINTGDGETLKEGI-TDLRGEIQQNQKYAQQLIEELT---KLRDSIGHDVRAFGSNKELLQSI----LKN 173 (346)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhhHHhHHHHHHHH----Hhc
Confidence 456777765554432211111111 1222334444444444444443 33335555555555555444433 333
Q ss_pred HHHHHhhHHHHHHhHhHhhh
Q 016340 329 RDATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlmf~le 348 (391)
....|.+|+.+|.++---+.
T Consensus 174 ~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 174 QGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TTCCHHHHHHHHHHHTGGGC
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 34456666666666554443
No 313
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=29.62 E-value=1.9e+02 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 304 LIKNQEIMRKKFKEIEERE 322 (391)
Q Consensus 304 L~~nq~~~~~~~~~le~~~ 322 (391)
|+.|-..+.+.|..||+++
T Consensus 35 ~~~~~~~~EKTIDDLEDkL 53 (77)
T 3mtu_E 35 LRVNYGSFVSEYNDLEEKV 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 314
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=29.38 E-value=80 Score=21.90 Aligned_cols=11 Identities=45% Similarity=0.655 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 016340 312 RKKFKEIEERE 322 (391)
Q Consensus 312 ~~~~~~le~~~ 322 (391)
+.+.+++|..+
T Consensus 13 Rkk~eeler~l 23 (50)
T 1a92_A 13 RKKLEELERDL 23 (50)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 315
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.22 E-value=14 Score=33.13 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=5.2
Q ss_pred eeeeccccc
Q 016340 137 LWVCLICGF 145 (391)
Q Consensus 137 lwiCL~CG~ 145 (391)
+|.|.+||.
T Consensus 186 p~~CP~C~~ 194 (202)
T 1yuz_A 186 FEKCPICFR 194 (202)
T ss_dssp CSBCTTTCC
T ss_pred CCCCCCCCC
Confidence 466666654
No 316
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=29.12 E-value=38 Score=26.99 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=25.6
Q ss_pred ccceeecCC--CCCceEEEEecCChhhHHHHHHH
Q 016340 2 SSNTVRNDA--MEDRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 2 ~~r~ir~d~--~~~~y~vLlkF~~~~~A~~f~~~ 33 (391)
+++++|... -|++|.++..|+|.++-+.|...
T Consensus 42 ~~~llr~~~~~~~~~y~~~~~W~s~eaf~aw~~S 75 (114)
T 1tz0_A 42 DLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETS 75 (114)
T ss_dssp EEEEEECCCSSSSEEEEEEEEESCHHHHHHHHTC
T ss_pred EEEEEEcCCCCCCcEEEEEEEECCHHHHHHHHcC
Confidence 567888655 58999999999999987766654
No 317
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=29.02 E-value=27 Score=27.89 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.1
Q ss_pred EEEecCChhhHHHHHHHhcCcccCCCCcccceEEEEeEEEEe
Q 016340 17 VLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYT 58 (391)
Q Consensus 17 vLlkF~~~~~A~~f~~~~ng~~f~s~e~e~C~v~~v~~v~~~ 58 (391)
+-|.|.++++..+|...|+|..|-.-... -|...|++.
T Consensus 56 AYI~F~~~edv~~F~~~f~g~~F~D~kg~----~~~a~VE~A 93 (97)
T 2l08_A 56 AYINFRNPDDILLFRDRFDGYIFLDSKGL----EYPAVVEFA 93 (97)
T ss_dssp CEEEESCHHHHHHHHHHSTTEEEECTTCC----EEEEEEEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCcEEEeCCCC----EeeeEEEec
Confidence 46889999999999999999999654322 144555553
No 318
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.94 E-value=2.7e+02 Score=28.32 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHHHhHhHhh
Q 016340 327 RLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~l 347 (391)
+...++|.+|+++++++---|
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888776544
No 319
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=28.77 E-value=55 Score=23.85 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=28.5
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+=...+.|.+.++|+.-. .+||..|.
T Consensus 35 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 35 RVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp EEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 35677742 2223556889999999999999 99998875
No 320
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.74 E-value=82 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=11.1
Q ss_pred HHHHHHHHhhHHHHHH
Q 016340 326 LRLRDATILDLEEQIR 341 (391)
Q Consensus 326 ~~~~~~~i~dL~EQ~r 341 (391)
+..++++|.+|++++.
T Consensus 34 L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556778888887664
No 321
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.60 E-value=33 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.535 Sum_probs=19.2
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
+...|.||..- .. -+.=-.|...||..|+..
T Consensus 10 ~~~~C~vC~~~-g~---ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG-GE---IILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC-SS---EEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC-Cc---EEECCCCChhhhhhccCC
Confidence 45689999862 11 011124678899999854
No 322
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.52 E-value=46 Score=25.54 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=28.1
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|++ +.. ++-...+.|.+.++|+.....+||..|.
T Consensus 52 ~~i~~-~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 52 IDLKN-RRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp EEECC-SSS-SSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEEE-CCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45555 332 4557889999999999999999998774
No 323
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.48 E-value=2.2e+02 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 275 AVASKMQDIQNELDICEEAKKAVAD 299 (391)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~e~~~~~~ 299 (391)
.+..++..|+..+++....+..+..
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444433
No 324
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.47 E-value=28 Score=27.09 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=17.6
Q ss_pred CCcccccCcccc---eeeecccccccccC
Q 016340 125 RPTCSVCGTVEN---LWVCLICGFVGCGR 150 (391)
Q Consensus 125 ~~~C~~C~~~~~---lwiCL~CG~vgCgr 150 (391)
..+|..|..... .+.|- ||.+.|+.
T Consensus 25 ~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECR-CGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECT-TCCEECTT
T ss_pred CccchhhCCeecccCCeEcC-CCCEeccc
Confidence 357777776544 46795 99999973
No 325
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=28.44 E-value=36 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.8
Q ss_pred EEEEecCChhhHHHHHHHhcCcccC
Q 016340 16 SVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 16 ~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
...+.|.+.++|......+||..|.
T Consensus 47 ~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 47 YAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEEEeCCHHHHHHHHHHHCCCccC
Confidence 5789999999999999999999775
No 326
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=28.30 E-value=49 Score=25.98 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=28.8
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+.++|+... .+||..|.
T Consensus 65 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 65 RITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp EEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred EEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 35777742 2234557889999999999999 89998874
No 327
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=28.23 E-value=45 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=30.1
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... ..+-...+.|.+.++|+.....+||..|.
T Consensus 71 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677774221 23557889999999999999999998875
No 328
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=28.12 E-value=36 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.2
Q ss_pred CCceEEEEecCChhhHHHHHHH
Q 016340 12 EDRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 12 ~~~y~vLlkF~~~~~A~~f~~~ 33 (391)
+..-.|||.|.|.+.|..||..
T Consensus 51 ~~~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 51 EHKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CCSEEEEEEESSHHHHHHHHHS
T ss_pred CCCeEEEEECCCHHHHHHHHCC
Confidence 3567999999999999999874
No 329
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.00 E-value=2.1e+02 Score=22.18 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 016340 281 QDIQNELDIC 290 (391)
Q Consensus 281 ~~l~~~l~~~ 290 (391)
..|+.+++.+
T Consensus 59 ~~Lr~~i~~~ 68 (93)
T 3s4r_A 59 RELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 330
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=27.86 E-value=39 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred CCceEEEEecCChhhHHHHHHHhc
Q 016340 12 EDRYSVLIKLVDQLTADEFYSNLN 35 (391)
Q Consensus 12 ~~~y~vLlkF~~~~~A~~f~~~~n 35 (391)
+..-..+|+|.+.+.|++|+..|+
T Consensus 92 ~~~~~~~irfks~e~a~~f~~~~e 115 (130)
T 1xke_A 92 AKLEQLAAKFKTPELAEEFKQKFE 115 (130)
T ss_dssp SEEEEEEEECSSHHHHHHHHHHHH
T ss_pred CceEEEEEEECCHHHHHHHHHHHH
Confidence 345678999999999999999985
No 331
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.84 E-value=32 Score=25.60 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCCCCCccccccCCc-CCCCCCceeecCCCcccchhhh
Q 016340 70 GFTELPTCPICLERL-DPDTSGILSTICDHSFQCSCTA 106 (391)
Q Consensus 70 ~~~E~~tCpiCle~l-d~~~~g~it~~C~H~F~~~Cl~ 106 (391)
...+...|.||..-- ++...-+.=-.|+-.||..|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 445677899998753 1111111112467889999974
No 332
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.81 E-value=52 Score=24.77 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.3
Q ss_pred ceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 14 RYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 14 ~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+=...+.|.+.++|+.....+||..|..
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3467899999999999999999998753
No 333
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=27.74 E-value=40 Score=27.10 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.0
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|.|+ . .+=-+-++|.+.++|..-...+||+.|..
T Consensus 46 ~v~i~~~-~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 46 HIYVDKN-S--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp EEEECTT-C--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred EEEEecC-C--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3566663 2 24458899999999999999999999953
No 334
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.67 E-value=4.3e+02 Score=25.65 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCcEEeecCC
Q 016340 363 KGGTVLPVSY 372 (391)
Q Consensus 363 ~~g~i~~~~~ 372 (391)
.+|+++|-.+
T Consensus 321 ~~G~FLVR~S 330 (373)
T 3hhm_B 321 RDGTFLVRES 330 (373)
T ss_dssp ----------
T ss_pred CCCcEEEEec
Confidence 3677776555
No 335
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=27.67 E-value=64 Score=24.46 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=29.1
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCccc
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRF 39 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f 39 (391)
+++|+++.. -..+-...+.|.+.++|......+||..+
T Consensus 42 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 42 ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 456777321 22455788999999999999999999876
No 336
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.55 E-value=2e+02 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.075 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHhHhHhh
Q 016340 330 DATILDLEEQIRDLTVYI 347 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~l 347 (391)
+.+|..|+.|++-|.--|
T Consensus 41 q~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677777777665433
No 337
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=27.51 E-value=41 Score=27.72 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.7
Q ss_pred ceEEEEecCChhhHHHHHHHh
Q 016340 14 RYSVLIKLVDQLTADEFYSNL 34 (391)
Q Consensus 14 ~y~vLlkF~~~~~A~~f~~~~ 34 (391)
--++||+|.+..++..|+...
T Consensus 82 ~~slLl~Fas~~d~~~F~~~l 102 (117)
T 2oqb_A 82 CNSVLIQFATPHDFCSFYNIL 102 (117)
T ss_dssp TEEEEEECSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHH
Confidence 347899999999999999876
No 338
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=27.42 E-value=62 Score=23.68 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=29.5
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -..+-...+.|.+.+ |..-...+||..|..
T Consensus 30 ~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 30 NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 456777322 234667889999999 999999999998753
No 339
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=27.38 E-value=48 Score=25.20 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=25.9
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHH
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~ 33 (391)
++.+.|+..-|+.|.++-.|+|..+-+.|...
T Consensus 37 ~~~l~~~~~~~~~~~~~~~W~s~~a~~a~~~s 68 (106)
T 1iuj_A 37 RNLVLRPKNPGDPYVVMTLWESEEAFRAWTES 68 (106)
T ss_dssp EEEEEEESSTTSCEEEEEEESCHHHHHHHHTS
T ss_pred EEEEEecCCCCCeEEEEEEECCHHHHHHHhcC
Confidence 45678855568999999999999998877654
No 340
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.28 E-value=4.9e+02 Score=26.19 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHhHhHhhhhH
Q 016340 330 DATILDLEEQIRDLTVYIEAQ 350 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf~le~q 350 (391)
...++.|.+.|..|...+..+
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 341
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=29 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.454 Sum_probs=20.0
Q ss_pred CCCCCccccccCCcCCCCCCceeecCCCcccchhhh
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 106 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~ 106 (391)
-.+...|.||... .. -+.=-.|...||..|+.
T Consensus 6 ~~~~~~C~vC~~~-g~---ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 6 SGHEDFCSVCRKS-GQ---LLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CSSCCSCSSSCCS-SC---CEECSSSSCEECSSSSS
T ss_pred CCCCCCCccCCCC-Ce---EEEcCCCCcceECccCC
Confidence 3456789999873 11 11122467889988875
No 342
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=27.23 E-value=60 Score=22.83 Aligned_cols=39 Identities=3% Similarity=0.007 Sum_probs=28.2
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++. .-.++=...+.|.+.++|+.... +||..|+.
T Consensus 28 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 28 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp EECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 35667632 22345678899999999999876 89987753
No 343
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.18 E-value=1.2e+02 Score=24.97 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKA 296 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~ 296 (391)
..++.|.++||++......
T Consensus 10 ~Eiq~L~drLD~~~rKlaa 28 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQAD 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777765444
No 344
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.14 E-value=1.8e+02 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016340 282 DIQNELDICEEAKKAVADVNSK 303 (391)
Q Consensus 282 ~l~~~l~~~~~e~~~~~~ln~~ 303 (391)
.|.++|..+.+++..+...|..
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444443333333
No 345
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.01 E-value=3e+02 Score=23.56 Aligned_cols=9 Identities=0% Similarity=0.228 Sum_probs=3.4
Q ss_pred hHHHHHHhH
Q 016340 335 DLEEQIRDL 343 (391)
Q Consensus 335 dL~EQ~rDl 343 (391)
+|...+.||
T Consensus 127 eLd~tl~el 135 (155)
T 2efr_A 127 EMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 346
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.98 E-value=17 Score=26.59 Aligned_cols=34 Identities=29% Similarity=0.651 Sum_probs=20.4
Q ss_pred CCccccccCCcCCCCCCceee-cCCCcccchhhhc
Q 016340 74 LPTCPICLERLDPDTSGILST-ICDHSFQCSCTAK 107 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~-~C~H~F~~~Cl~~ 107 (391)
...|++|...+++...-|.=- .|..=||..|+.-
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 457999999886542211111 4556688888743
No 347
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.94 E-value=2e+02 Score=21.54 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=6.2
Q ss_pred HHHhhHHHHHHh
Q 016340 331 ATILDLEEQIRD 342 (391)
Q Consensus 331 ~~i~dL~EQ~rD 342 (391)
.++.||...+.-
T Consensus 56 ~eL~elrq~Lak 67 (72)
T 3cve_A 56 FELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355556555543
No 348
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.56 E-value=3.2e+02 Score=23.76 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=8.9
Q ss_pred HHHhhHHHHHH----hHhHhhhh
Q 016340 331 ATILDLEEQIR----DLTVYIEA 349 (391)
Q Consensus 331 ~~i~dL~EQ~r----Dlmf~le~ 349 (391)
+.|.+|+..-. ||+|=|-+
T Consensus 125 Ekl~~lEKe~a~~eid~~~eLKa 147 (168)
T 3o0z_A 125 DMLNHSEKEKNNLEIDLNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555554333 34465543
No 349
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.50 E-value=2.6e+02 Score=22.78 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 277 ASKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLR 327 (391)
Q Consensus 277 ~~~~~~l~~~l~~~~~e~~~~----~~ln~~L~~nq~~~~~~~~~le~~~~~~~~ 327 (391)
...++.|+.+++.++..+..| .++..........++.++..+|..+..+..
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555443332 222233333344455566666665544443
No 350
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.48 E-value=27 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=20.5
Q ss_pred cccccCCcCC-CCCCceee-cCCCcccchhhhcc
Q 016340 77 CPICLERLDP-DTSGILST-ICDHSFQCSCTAKW 108 (391)
Q Consensus 77 CpiCle~ld~-~~~g~it~-~C~H~F~~~Cl~~w 108 (391)
||-|-..+.. +....++= .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8877775521 11112333 38999999999888
No 351
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=26.30 E-value=24 Score=26.92 Aligned_cols=11 Identities=18% Similarity=0.724 Sum_probs=8.3
Q ss_pred cccCCCccccc
Q 016340 110 VLSCQVCRFCH 120 (391)
Q Consensus 110 ~~~CP~Cr~~~ 120 (391)
...||+|.+..
T Consensus 17 tWVCpICsfsN 27 (76)
T 2j9u_B 17 TWVCPICMVSN 27 (76)
T ss_dssp EEECTTTCCEE
T ss_pred ceECccccccC
Confidence 45899998754
No 352
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=26.27 E-value=68 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=30.1
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
.++|+++... .++-.+.+.|.+.++|..-...+||..|.
T Consensus 154 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 3677874211 23556899999999999999999999875
No 353
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.19 E-value=3.2e+02 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAV 297 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~ 297 (391)
+.+|+.++..+..|++.+
T Consensus 92 ~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 354
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.18 E-value=2.2e+02 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 280 MQDIQNELDICEEAKKAVADVNSKLIK 306 (391)
Q Consensus 280 ~~~l~~~l~~~~~e~~~~~~ln~~L~~ 306 (391)
..+|...++.+.+|+..+++.|+.|..
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 355
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.16 E-value=98 Score=22.81 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=17.9
Q ss_pred CCCCccccccCCcCCCCCCceeecCC------Ccccchhhh
Q 016340 72 TELPTCPICLERLDPDTSGILSTICD------HSFQCSCTA 106 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~------H~F~~~Cl~ 106 (391)
.+..-| ||..... | ..+.|. .-||..|+.
T Consensus 14 ~~~~~C-~C~~~~~----g-~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 14 NEPTYC-LCHQVSY----G-EMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp TSCCCS-TTCCCSC----S-SEECCSCSSCSCCCEETTTTT
T ss_pred CCCCEE-ECCCCCC----C-CEeEeeCCCCCCccEecccCC
Confidence 455667 8987543 3 244453 468988885
No 356
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=26.07 E-value=29 Score=29.79 Aligned_cols=20 Identities=25% Similarity=0.276 Sum_probs=8.0
Q ss_pred ecccccccccCCCCcccccc
Q 016340 140 CLICGFVGCGRYKEGHAVRH 159 (391)
Q Consensus 140 CL~CG~vgCgr~~~~HA~~H 159 (391)
|..||...--.....|..+|
T Consensus 128 C~ACGa~~~V~~~k~~~~~~ 147 (148)
T 2d74_B 128 CEACGAETPIQHLLEHHHHH 147 (148)
T ss_dssp CSSSCCCCCCCC--------
T ss_pred ecCCCCCccccchhhccccC
Confidence 77777776554455555444
No 357
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=26.05 E-value=53 Score=28.76 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred ccceeecCCC-----CCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~-----~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+|+... +.+=-+-++|.+..+|..-...+||+.|+.
T Consensus 158 ~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 158 RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 4567764222 334568899999999999999999998864
No 358
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.00 E-value=20 Score=24.60 Aligned_cols=7 Identities=57% Similarity=2.119 Sum_probs=3.4
Q ss_pred eeecccc
Q 016340 138 WVCLICG 144 (391)
Q Consensus 138 wiCL~CG 144 (391)
|.|.+||
T Consensus 31 w~CP~Cg 37 (46)
T 6rxn_A 31 WCCPVCG 37 (46)
T ss_dssp CBCTTTC
T ss_pred CcCcCCC
Confidence 4455444
No 359
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=25.89 E-value=32 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=20.1
Q ss_pred CCCccccccCCcCCCCCCceee---cCCCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILST---ICDHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~---~C~H~F~~~Cl~~ 107 (391)
+...|+||....+.. ..+ .|..-||..|+..
T Consensus 17 ~~~~C~~C~~~~~~~----~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 17 QIWICPGCNKPDDGS----PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp EEECBTTTTBCCSSC----CEEECSSSSSEEEHHHHTC
T ss_pred CCcCCCCCCCCCCCC----CEEEcCCCCcccccccCCC
Confidence 445699998765431 233 3667899998854
No 360
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.82 E-value=1.2e+02 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.358 Sum_probs=6.1
Q ss_pred HHhhHHHHHHhHh
Q 016340 332 TILDLEEQIRDLT 344 (391)
Q Consensus 332 ~i~dL~EQ~rDlm 344 (391)
+|..|++++..|-
T Consensus 44 ~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 44 TANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544443
No 361
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=25.77 E-value=45 Score=25.62 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=29.2
Q ss_pred cceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 3 SNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 3 ~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++|+|..+ ..+=...+.|.+..+|..-...+||..|.
T Consensus 51 v~i~~~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 51 DFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp EECCCBTT-BSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred EEeeCCCC-CeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 45665333 44556789999999999999999999885
No 362
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=25.73 E-value=55 Score=25.65 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCceEEEEecCChhhHHHHHHH
Q 016340 12 EDRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 12 ~~~y~vLlkF~~~~~A~~f~~~ 33 (391)
+..-.||+.|.|.+.|..||..
T Consensus 52 ~~~~~viieFpS~~aa~~~~~s 73 (99)
T 2fiu_A 52 ARARNVVIEFPSVQHAIDCYNS 73 (99)
T ss_dssp CCSEEEEEEESSHHHHHHHHHS
T ss_pred CcCeEEEEECCCHHHHHHHHcC
Confidence 3448999999999999999874
No 363
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.60 E-value=95 Score=23.76 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=9.8
Q ss_pred HHHhhHHHHHHhHhHhhh
Q 016340 331 ATILDLEEQIRDLTVYIE 348 (391)
Q Consensus 331 ~~i~dL~EQ~rDlmf~le 348 (391)
+++.+++.++-.+|--.+
T Consensus 63 ~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 63 ADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666655443
No 364
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.59 E-value=42 Score=29.59 Aligned_cols=40 Identities=23% Similarity=0.636 Sum_probs=24.0
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhcc------ccccCCCccc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRF 118 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w------~~~~CP~Cr~ 118 (391)
..|.+|.+-=+ -+.--.|...||..|+..- +...||.|+.
T Consensus 3 ~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 3 TICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CCBTTTCCCSS----CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CcCccCCCCCc----eeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 46889984321 1122347889999998531 1345777754
No 365
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=25.50 E-value=65 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.5
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|++ | .+-...+.|.+..+|..-...+||..|.
T Consensus 102 ~v~i~~-~---~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 102 SVWVAR-N---PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp EEEECS-S---SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred EEEEee-C---CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356777 3 3457889999999999999999998774
No 366
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.45 E-value=57 Score=25.24 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=28.7
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
.++|+++.. -..+-...+.|.+..+|+... .+||..|.
T Consensus 54 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 54 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp EEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred EEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 356777332 134556889999999999999 99998874
No 367
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.29 E-value=68 Score=24.47 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=29.6
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhc------CcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLN------GKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~n------g~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|+.....+| |..|.
T Consensus 44 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 44 YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 356777321 1345578899999999999999999 88774
No 368
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.12 E-value=2.7e+02 Score=22.42 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHhhHHHHHHhHh
Q 016340 330 DATILDLEEQIRDLT 344 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlm 344 (391)
.++|+.++++++.+|
T Consensus 115 ~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 115 TDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 346666666666655
No 369
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.12 E-value=52 Score=25.00 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=28.7
Q ss_pred ccceeecCCC--CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~--~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... .++-...+.|.+..+|+... .+||..|.
T Consensus 43 ~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 43 AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp EEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred EEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4577774321 34556789999999999999 99998774
No 370
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.07 E-value=2.7e+02 Score=22.50 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=11.4
Q ss_pred HHHHhhHHHHHHhHhH
Q 016340 330 DATILDLEEQIRDLTV 345 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf 345 (391)
..++.+|++||+-|.-
T Consensus 89 ~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3567888888886654
No 371
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.06 E-value=20 Score=28.69 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=17.7
Q ss_pred CccccccCCcCCCCCCceeec----CCCcccchhh
Q 016340 75 PTCPICLERLDPDTSGILSTI----CDHSFQCSCT 105 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~----C~H~F~~~Cl 105 (391)
-.|++|...+++. + ..+. |..=||..|+
T Consensus 4 ~~C~iC~~p~~~~--~-~mi~Cdd~C~~WfH~~CV 35 (105)
T 2xb1_A 4 YPCGACRSEVNDD--Q-DAILCEASCQKWFHRECT 35 (105)
T ss_dssp CBCTTTCSBCCTT--S-CEEECTTTTCCEEEGGGT
T ss_pred CCCCCCCCccCCC--C-CEEEecCCcccccccccC
Confidence 4699999988553 2 1233 4455777776
No 372
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.97 E-value=2.7e+02 Score=22.32 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016340 312 RKKFKEIEE 320 (391)
Q Consensus 312 ~~~~~~le~ 320 (391)
+.+++++++
T Consensus 36 KD~LEe~eE 44 (103)
T 4h22_A 36 KDMLLELEE 44 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 373
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.91 E-value=31 Score=24.55 Aligned_cols=18 Identities=39% Similarity=0.881 Sum_probs=14.0
Q ss_pred CCCCCCCccccccCCcCC
Q 016340 69 AGFTELPTCPICLERLDP 86 (391)
Q Consensus 69 ~~~~E~~tCpiCle~ld~ 86 (391)
..+-+...||+|...+..
T Consensus 5 ~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEE 22 (56)
T ss_dssp CSCTTSCCCSSSCSCEEE
T ss_pred HHHHhheeCCCCCCccee
Confidence 456788899999987643
No 374
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.81 E-value=2.6e+02 Score=22.21 Aligned_cols=44 Identities=7% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
...-.|..++.++++|-..++.+++........+..++..|..+
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 33445666666666666666655555544444444444444333
No 375
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=24.66 E-value=64 Score=24.75 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=28.4
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcc
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKR 38 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~ 38 (391)
++||+|+..+ .+|=..-+.|.+.++|......+||..
T Consensus 40 ~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 4688884221 245467799999999999999999975
No 376
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.65 E-value=4.2e+02 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 016340 228 NSKVEAIVDEYNRLLATQLET 248 (391)
Q Consensus 228 ~~K~e~~~~Ey~~ll~sqLes 248 (391)
..+++-+..|+...+...+|.
T Consensus 50 r~~L~Py~~el~~~~~~~~ee 70 (273)
T 3s84_A 50 QQRLEPYADQLRTQVNTQAEQ 70 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555555555544
No 377
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.63 E-value=2.8e+02 Score=22.48 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=3.0
Q ss_pred HHhhHHHH
Q 016340 332 TILDLEEQ 339 (391)
Q Consensus 332 ~i~dL~EQ 339 (391)
+|..|.++
T Consensus 46 qV~~L~~~ 53 (112)
T 1x79_B 46 QISALVLR 53 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 378
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.60 E-value=3.1e+02 Score=22.91 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhHh
Q 016340 309 EIMRKKFKEIEEREITS---LRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~~---~~~~~~~i~dL~EQ~rDlm 344 (391)
..+-.+|..+|++.-++ .+..+-+|.||..+|.||+
T Consensus 68 keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 68 RQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 33444455555443222 3345578999999999996
No 379
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=24.54 E-value=95 Score=24.40 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCccccccCCcCCCCCCceeec---CCCcccchhhhc-c--ccccCCCccccc
Q 016340 73 ELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAK-W--TVLSCQVCRFCH 120 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~---C~H~F~~~Cl~~-w--~~~~CP~Cr~~~ 120 (391)
..+.|.||-|-......|-+-.. |+-..|..|..- + ....||.|..-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 45799999998765556644333 455678888755 2 256788887643
No 380
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=24.27 E-value=65 Score=26.39 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=29.9
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++. .-..+-...+.|.+.++|..-...+||..|.
T Consensus 99 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 99 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677731 1234556789999999999999999998875
No 381
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.26 E-value=70 Score=27.23 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=29.6
Q ss_pred ccceeecC-CCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d-~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++. .-..+-...+.|.+.++|......+||..|..
T Consensus 57 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 57 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 35677732 12246678999999999999999999987753
No 382
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.21 E-value=65 Score=24.43 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=28.9
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++.. -.++=...+.|.+..+|+..... ||..|..
T Consensus 45 ~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 45 DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 457787311 22455788999999999999998 9987753
No 383
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=24.19 E-value=39 Score=20.68 Aligned_cols=22 Identities=32% Similarity=0.804 Sum_probs=14.8
Q ss_pred cCCCccccccCCCCCcccccCcc
Q 016340 112 SCQVCRFCHQQDERPTCSVCGTV 134 (391)
Q Consensus 112 ~CP~Cr~~~~~~~~~~C~~C~~~ 134 (391)
.||.|-+.. .+..+.|..|+.+
T Consensus 8 ~C~~CTf~N-~~~~~~Ce~C~~~ 29 (31)
T 1nj3_A 8 ACQHCTFMN-QPGTGHCEMCSLP 29 (31)
T ss_dssp ECSSSCCEE-CSSCSSCSSSCCC
T ss_pred cCCcccccC-CCCCCccCCcCCC
Confidence 688887754 4556677777654
No 384
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=24.09 E-value=2.7e+02 Score=22.96 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHhhHHHHHHhHhHh
Q 016340 332 TILDLEEQIRDLTVY 346 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~ 346 (391)
-|.||-++|+|.--.
T Consensus 49 IIkDisdkId~CeCn 63 (129)
T 3f6n_A 49 IVNDLTKLINDCPCN 63 (129)
T ss_dssp HHHHHHHHHHTCTTH
T ss_pred HHHHHHHHHhcCcch
Confidence 577777777776443
No 385
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=24.09 E-value=29 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.472 Sum_probs=27.5
Q ss_pred CCcccccCc---ccceeeecccccccccCCCCccccc-ccCCC---CCcc
Q 016340 125 RPTCSVCGT---VENLWVCLICGFVGCGRYKEGHAVR-HWKDT---QHWY 167 (391)
Q Consensus 125 ~~~C~~C~~---~~~lwiCL~CG~vgCgr~~~~HA~~-H~~~t---~H~~ 167 (391)
...|..|.. ......|+.|....| ..|... |.... .|.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCCCCCCCCCcc
Confidence 467888864 345778999999999 577775 76543 5654
No 386
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=24.04 E-value=3.3e+02 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHhHh
Q 016340 309 EIMRKKFKEIEEREIT---SLRLRDATILDLEEQIRDLT 344 (391)
Q Consensus 309 ~~~~~~~~~le~~~~~---~~~~~~~~i~dL~EQ~rDlm 344 (391)
..+-.+|..+|++.-. ..+..+-+|.+|..+|.||+
T Consensus 65 kELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 65 KKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555544322 23345578999999999996
No 387
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.86 E-value=35 Score=28.78 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=10.1
Q ss_pred cceeeecccccc
Q 016340 135 ENLWVCLICGFV 146 (391)
Q Consensus 135 ~~lwiCL~CG~v 146 (391)
.++|+|..|++.
T Consensus 42 g~l~vCPeC~hE 53 (138)
T 2akl_A 42 GALLVCPECAHE 53 (138)
T ss_dssp SSSEEETTTTEE
T ss_pred CCeEECCccccc
Confidence 469999999886
No 388
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.68 E-value=5.4e+02 Score=25.40 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=12.8
Q ss_pred HHHHHhhHHHHHHhHhHhh
Q 016340 329 RDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 329 ~~~~i~dL~EQ~rDlmf~l 347 (391)
.+.+|..|+++|..|+-.+
T Consensus 117 ~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 117 NSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3456777788777777544
No 389
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=23.64 E-value=68 Score=27.49 Aligned_cols=40 Identities=5% Similarity=-0.036 Sum_probs=30.0
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccCC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 41 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~s 41 (391)
+++|+++..-..+-.+.+.|.+..+|......+||..|..
T Consensus 117 ~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 117 KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3567773322245568899999999999999999987753
No 390
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=23.63 E-value=69 Score=28.87 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=31.2
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..-.++-.+.+.|.+..+|..-...+||..|.
T Consensus 214 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 214 FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 467777432234678899999999999999999999884
No 391
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.59 E-value=2.1e+02 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 297 VADVNSKLIKNQEIMRKKFKEIEER 321 (391)
Q Consensus 297 ~~~ln~~L~~nq~~~~~~~~~le~~ 321 (391)
+-.+|..|.+....++.++..|..+
T Consensus 32 LmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 32 LMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3345555555555555555544443
No 392
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.58 E-value=2.9e+02 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHhhHHHHHHhHhH
Q 016340 328 LRDATILDLEEQIRDLTV 345 (391)
Q Consensus 328 ~~~~~i~dL~EQ~rDlmf 345 (391)
..+.+|.+|+-|+.|..-
T Consensus 86 alq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 86 TLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777777643
No 393
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=23.42 E-value=1.4e+02 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=14.5
Q ss_pred HHhhHHHHHHhHhHhhhh
Q 016340 332 TILDLEEQIRDLTVYIEA 349 (391)
Q Consensus 332 ~i~dL~EQ~rDlmf~le~ 349 (391)
....|+|.+-|++|||-.
T Consensus 73 ~~~~l~eElgDvL~~l~~ 90 (111)
T 2oie_A 73 ERAALQEELSDVLIYLVA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346789999999999854
No 394
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=23.22 E-value=2.6e+02 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.8
Q ss_pred HhhHHHHHHhHhH
Q 016340 333 ILDLEEQIRDLTV 345 (391)
Q Consensus 333 i~dL~EQ~rDlmf 345 (391)
+..-=.|||||.+
T Consensus 57 vk~W~~~vrdlaY 69 (115)
T 3qfl_A 57 DKLWADEVRELSY 69 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444555444
No 395
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.21 E-value=3e+02 Score=22.27 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 016340 296 AVADVNSKLIK 306 (391)
Q Consensus 296 ~~~~ln~~L~~ 306 (391)
.+..-|..|..
T Consensus 60 eLEq~NDDLER 70 (111)
T 2v66_B 60 ELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhchHHHH
Confidence 33334444433
No 396
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.18 E-value=74 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=24.4
Q ss_pred CceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 13 DRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 13 ~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
++-...+.|.+..+|+.....+||..|.
T Consensus 62 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 62 EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3446889999999999999999998875
No 397
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.17 E-value=2.8e+02 Score=21.91 Aligned_cols=15 Identities=13% Similarity=0.492 Sum_probs=10.7
Q ss_pred HHHHhhHHHHHHhHh
Q 016340 330 DATILDLEEQIRDLT 344 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlm 344 (391)
+.+|.+|..+|.|..
T Consensus 73 qgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 73 ENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777776
No 398
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=23.15 E-value=47 Score=27.60 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=18.4
Q ss_pred eEEEEecCChhhHHHHHHHhc
Q 016340 15 YSVLIKLVDQLTADEFYSNLN 35 (391)
Q Consensus 15 y~vLlkF~~~~~A~~f~~~~n 35 (391)
=..+|+|.+.+.|++|+..|.
T Consensus 96 ~~~~lrfks~e~A~~f~~~ie 116 (130)
T 3n7c_A 96 ETFIIKVKQKADGRRLVGAVA 116 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHH
Confidence 356899999999999999875
No 399
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.10 E-value=3.3e+02 Score=22.75 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHhH
Q 016340 297 VADVNSKLIKNQEIMRKKFKEIEE---REITSLRLRDATILDLEEQIRDL 343 (391)
Q Consensus 297 ~~~ln~~L~~nq~~~~~~~~~le~---~~~~~~~~~~~~i~dL~EQ~rDl 343 (391)
...+++.|...++.+...+....+ +.........+...++++||-|=
T Consensus 91 ~~~le~~L~e~~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A 140 (155)
T 2oto_A 91 RQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544433333333 11111112223445666666663
No 400
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=23.06 E-value=41 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.674 Sum_probs=15.2
Q ss_pred cCCCccccccCCCCCcccccCcc
Q 016340 112 SCQVCRFCHQQDERPTCSVCGTV 134 (391)
Q Consensus 112 ~CP~Cr~~~~~~~~~~C~~C~~~ 134 (391)
.||.|-+.. .+....|..|+..
T Consensus 10 ~C~~CT~~N-~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 10 NCTACTFLN-HPALIRCEQCEMP 31 (34)
T ss_dssp ECTTTCCEE-CTTCSBCTTTCCB
T ss_pred CCCCCcccc-CCCCCeeCCCCCc
Confidence 688887755 4556677777754
No 401
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=22.99 E-value=75 Score=26.09 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=30.2
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -..+-...+.|.+..+|+.....+||..|.
T Consensus 68 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 68 KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467777322 124567899999999999999999998874
No 402
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.89 E-value=2.5e+02 Score=21.94 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 016340 278 SKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIM 311 (391)
Q Consensus 278 ~~~~~l~~~l~~~~~e~~~~~-~ln~~L~~nq~~~ 311 (391)
..+..++..+..++.++..++ ++..-++..++-+
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665555554443 3334444444433
No 403
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.82 E-value=85 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.542 Sum_probs=25.5
Q ss_pred CCCCccccccCCcCCCCCCceeecCCCcccchhhhcc------ccccCCCccc
Q 016340 72 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRF 118 (391)
Q Consensus 72 ~E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w------~~~~CP~Cr~ 118 (391)
.....|.||..-= . -+.=-.|...||..|+..- ....||.|..
T Consensus 23 ~n~~~C~vC~~~g-~---LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPG-D---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSS-C---CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCC-C---EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3467899998631 1 1112246788999998441 1345666654
No 404
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.57 E-value=43 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=24.5
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhcc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 108 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w 108 (391)
+...|++|...|.....---=-.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 467899999998743211122468999999887553
No 405
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.45 E-value=2e+02 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 284 QNELDICEEAKKAVADVNSKLIKNQEIMRKK 314 (391)
Q Consensus 284 ~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~ 314 (391)
+.+...+..++..+..-+..+....+.|+.+
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334333
No 406
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.30 E-value=3.1e+02 Score=22.19 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 016340 311 MRKKFKEIEEREI 323 (391)
Q Consensus 311 ~~~~~~~le~~~~ 323 (391)
++.++..+|..+.
T Consensus 80 ~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 80 ARNKLAELEEALQ 92 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH
Confidence 3444444444443
No 407
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.17 E-value=3.3e+02 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQR 250 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR 250 (391)
..+.+.++..||..|. |.|.||
T Consensus 7 V~s~l~~LEaeyq~L~--~kE~qr 28 (119)
T 2avr_X 7 LVGELQALDAEYQNLA--NQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHH
Confidence 4577888888998886 667777
No 408
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=22.08 E-value=61 Score=26.30 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=29.4
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++... .++-...+.|.+.++|+.....+||..|.
T Consensus 32 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 32 TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR 71 (168)
T ss_dssp EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC
Confidence 3566763211 24456899999999999999999998874
No 409
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.03 E-value=36 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.692 Sum_probs=19.9
Q ss_pred CccccccCCcCCCCCCce--eec---CCCcccchhhhccc
Q 016340 75 PTCPICLERLDPDTSGIL--STI---CDHSFQCSCTAKWT 109 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~i--t~~---C~H~F~~~Cl~~w~ 109 (391)
-.||-|.-.+.-. .|-. +-. |++.||-.|+..|.
T Consensus 7 k~CP~C~~~Iek~-~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKD-GGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSC-CSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeC-CCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 4688888776542 2322 211 66777777776664
No 410
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=21.98 E-value=29 Score=38.39 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=35.4
Q ss_pred CCCCCccccccCCcCCCCCCceeecCC-Ccccchhhhccc--cccCCCccc
Q 016340 71 FTELPTCPICLERLDPDTSGILSTICD-HSFQCSCTAKWT--VLSCQVCRF 118 (391)
Q Consensus 71 ~~E~~tCpiCle~ld~~~~g~it~~C~-H~F~~~Cl~~w~--~~~CP~Cr~ 118 (391)
.-+...|||-++.|.+| ++++-| +++-..+|.+|. +..||.-|.
T Consensus 888 iP~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~ 934 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRM 934 (968)
T ss_dssp SCGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCC
T ss_pred CcHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCC
Confidence 34577899999999877 788887 699999999995 567777554
No 411
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.98 E-value=4.2e+02 Score=23.48 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 016340 304 LIKNQEIMRKKF 315 (391)
Q Consensus 304 L~~nq~~~~~~~ 315 (391)
|++....++++.
T Consensus 46 L~~ql~sl~~~~ 57 (190)
T 4emc_A 46 LQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 333333333333
No 412
>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*
Probab=21.72 E-value=60 Score=25.14 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=25.7
Q ss_pred ccceeecCCCC--CceEEEEecCChhhHHHHHHH
Q 016340 2 SSNTVRNDAME--DRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 2 ~~r~ir~d~~~--~~y~vLlkF~~~~~A~~f~~~ 33 (391)
++.++|+...| ++|.++..|+|..+-+.|...
T Consensus 37 ~~~l~r~~~~~~~~~~~~~~~W~s~ea~~a~~~s 70 (109)
T 1sqe_A 37 QMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNS 70 (109)
T ss_dssp EEEEEEETTCSSSEEEEEEEEESCHHHHHHHHTS
T ss_pred EEEEEEcCCCCCCcEEEEEEEECCHHHHHHHHcC
Confidence 56788866667 999999999999987766554
No 413
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.66 E-value=4.6e+02 Score=23.83 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=5.5
Q ss_pred eEEEEeEEEEe
Q 016340 48 HMLFMLSVEYT 58 (391)
Q Consensus 48 ~v~~v~~v~~~ 58 (391)
+++|-..|.|.
T Consensus 24 ~~lf~revpve 34 (228)
T 3q0x_A 24 TTLFWRPVPVH 34 (228)
T ss_dssp EEEEEEEEEEE
T ss_pred eeeEeeeeeEE
Confidence 44555555544
No 414
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.65 E-value=2.9e+02 Score=21.48 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=9.0
Q ss_pred HHHHhhHHHHHHhHhH
Q 016340 330 DATILDLEEQIRDLTV 345 (391)
Q Consensus 330 ~~~i~dL~EQ~rDlmf 345 (391)
+.++..|+.+++||+-
T Consensus 91 ~~~~~~l~~~~~~~~~ 106 (112)
T 1l8d_A 91 ERELRRIDMEIKRLTP 106 (112)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466677777775553
No 415
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=21.61 E-value=34 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.590 Sum_probs=20.4
Q ss_pred CCcccccCc---ccceeeecccccccccCCCC
Q 016340 125 RPTCSVCGT---VENLWVCLICGFVGCGRYKE 153 (391)
Q Consensus 125 ~~~C~~C~~---~~~lwiCL~CG~vgCgr~~~ 153 (391)
...|..|.. .+....|+.|++..|..+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~ 34 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLK 34 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCH
Confidence 356777763 35677799999999965443
No 416
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.45 E-value=2.1e+02 Score=19.90 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=9.3
Q ss_pred HHHHhhHHHHHHhH
Q 016340 330 DATILDLEEQIRDL 343 (391)
Q Consensus 330 ~~~i~dL~EQ~rDl 343 (391)
.++|..|.++|.+|
T Consensus 36 R~el~~Lkeele~L 49 (51)
T 3m91_A 36 RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35677777777665
No 417
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.40 E-value=67 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCccccccCCcCC--CCCCceeecCCCcccchhhhccccccCCCcccc
Q 016340 74 LPTCPICLERLDP--DTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle~ld~--~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~ 119 (391)
.+.|+.|-..+.+ .. .....-+..||..|. .|..|...
T Consensus 5 ~~~C~~C~~~I~~~g~~--~~~~a~~~~wH~~CF------~C~~C~~~ 44 (76)
T 1x68_A 5 SSGCVACSKPISGLTGA--KFICFQDSQWHSECF------NCGKCSVS 44 (76)
T ss_dssp CCCCTTTCCCCCTTTTC--CEEEETTEEEEGGGC------BCTTTCCB
T ss_pred CCCCccCCCcccCCCCc--eeEEECCcccCcccC------ChhhCCCc
Confidence 4789999998764 11 134446788888884 77777653
No 418
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.25 E-value=3.4e+02 Score=22.21 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESL 256 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~ 256 (391)
..+.+.++..+|..|. +.|.||--=|..
T Consensus 7 i~~~l~~Leae~q~L~--~~E~qry~~eka 34 (119)
T 3etw_A 7 LVGELQALDAEYQNLA--NQEEARFNEERA 34 (119)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4566777777887774 555555333333
No 419
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.20 E-value=60 Score=23.94 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhhc
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 107 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~ 107 (391)
+...|.+|...|.....---=-.||..||..|...
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 34689999998864211111245888898888654
No 420
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.11 E-value=3.9e+02 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=0.0
Q ss_pred CcccccCCCceeE
Q 016340 165 HWYSLDLRTQQIW 177 (391)
Q Consensus 165 H~~~~~l~t~~vw 177 (391)
|..-+++.|..+|
T Consensus 7 ~~~~~~~~~~~~~ 19 (175)
T 3lay_A 7 HSSGVDLGTENLY 19 (175)
T ss_dssp -------------
T ss_pred cccccccchhHHH
Confidence 4455566665543
No 421
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=21.09 E-value=84 Score=24.30 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=25.6
Q ss_pred ccceeecCCCCC--ceEEEEecCChhhHHHHHHH
Q 016340 2 SSNTVRNDAMED--RYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 2 ~~r~ir~d~~~~--~y~vLlkF~~~~~A~~f~~~ 33 (391)
++.++|+...|+ +|.++..|+|.++-+.|...
T Consensus 39 ~~~l~r~~~~~~~~~~~~~~~W~s~ea~~a~~~s 72 (109)
T 2zdo_A 39 GMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKS 72 (109)
T ss_dssp EEEEEEETTCSSEEEEEEEEEESCHHHHHHHHTS
T ss_pred EEEEEecCCCCCceEEEEEEEECCHHHHHHHHcC
Confidence 567888666787 99999999999987766543
No 422
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=21.06 E-value=93 Score=19.04 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016340 240 RLLATQLETQRQYYESL 256 (391)
Q Consensus 240 ~ll~sqLesQR~yyE~~ 256 (391)
.||.--.|+||+-|+..
T Consensus 9 ~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46888899999999864
No 423
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=20.87 E-value=62 Score=23.39 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=23.1
Q ss_pred ceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 14 RYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 14 ~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+=...+.|.+.++|.... .+||..|.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 456889999999999999 99998875
No 424
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=20.84 E-value=51 Score=26.97 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=25.7
Q ss_pred ccceeecCCCCCceEEEEecCChhhHHHHHHH
Q 016340 2 SSNTVRNDAMEDRYSVLIKLVDQLTADEFYSN 33 (391)
Q Consensus 2 ~~r~ir~d~~~~~y~vLlkF~~~~~A~~f~~~ 33 (391)
++.++|+..-|++|.++..|+|.++-+.|...
T Consensus 38 ~~~L~r~~~~p~~yv~~~~WeS~ea~~aw~~S 69 (124)
T 3hx9_A 38 GFQLLRPVKGEERYFVVTHWESDEAFQAWANG 69 (124)
T ss_dssp EEEEEEEEESCCSEEEEEEESCHHHHHHHHHT
T ss_pred EEEEEeCCCCCCEEEEEEEECCHHHHHHHHhC
Confidence 46778854568999999999999988877654
No 425
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.80 E-value=3.6e+02 Score=26.88 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHHhHhHhh
Q 016340 327 RLRDATILDLEEQIRDLTVYI 347 (391)
Q Consensus 327 ~~~~~~i~dL~EQ~rDlmf~l 347 (391)
+...++|.+|+++++++---|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 79 REIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888876544
No 426
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.80 E-value=34 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.535 Sum_probs=18.8
Q ss_pred CCCccccccCCcCCCCCCceeecCCCcccchhhh
Q 016340 73 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 106 (391)
Q Consensus 73 E~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~ 106 (391)
....|.||.+- .. -+.=-.|...||..|+.
T Consensus 7 ~~~~C~vC~~~-g~---ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRDG-GE---LICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSCC-SS---CEECSSCCCEECTTTSS
T ss_pred CCCCCccCCCC-CC---EEEcCCCChhhcccccC
Confidence 56789999863 11 01112467889988874
No 427
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.78 E-value=6.6e+02 Score=25.34 Aligned_cols=108 Identities=9% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 242 LATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 242 l~sqLesQR~yyE~~l~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le 319 (391)
|...|..|.+=|-..|.++....+.- ....+-.-+..-.+-++..+.....--....++++.|+..+..++.+|..--
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777776543321 0001111111122222333333333233445677778888777777765322
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHhHhhhhHHHh
Q 016340 320 EREITSLRLRDATILDLEEQIRDLTVYIEAQKTL 353 (391)
Q Consensus 320 ~~~~~~~~~~~~~i~dL~EQ~rDlmf~le~q~ki 353 (391)
. .++..+.-|+++...|.=|-.-|.+|-..
T Consensus 132 ~----~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 132 N----RIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23344455666666666666666666544
No 428
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=20.60 E-value=92 Score=25.94 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=29.6
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..+ ..+=...+.|.+...|......+||..|.
T Consensus 101 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 101 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3567773111 23557889999999999999999998875
No 429
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=20.57 E-value=4.4e+02 Score=23.23 Aligned_cols=108 Identities=12% Similarity=0.184 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 016340 227 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA---------- 296 (391)
Q Consensus 227 ~~~K~e~~~~Ey~~ll~sqLesQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~---------- 296 (391)
..+++.-+..+...-|+..++.-|.-...-++++..+.+.-+. .+...+...+..++.+|.-.-.+++.
T Consensus 59 l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~-el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr 137 (216)
T 2lem_A 59 LQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLD-EFQKKWKEDVELYRQKASPQGAELQESARQKLQELQ 137 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSC
T ss_pred HHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3566666666666666666666555555566666665543222 23333444555555555433333211
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 016340 297 ------VADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEE 338 (391)
Q Consensus 297 ------~~~ln~~L~~nq~~~~~~~~~le~~~~~~~~~~~~~i~dL~E 338 (391)
..+|-..|..|.+.++..+.=.-++.+..+ ++.+++|++
T Consensus 138 ~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl---~~~leeL~~ 182 (216)
T 2lem_A 138 GRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESL---AQRLAELKS 182 (216)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH---HHHHHHHhC
Confidence 135666677777777776654444433222 244555555
No 430
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.36 E-value=24 Score=25.58 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=22.5
Q ss_pred CccccccCCcCCCCCCceeecCCCcccchhhhccc--cccCCCc
Q 016340 75 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVC 116 (391)
Q Consensus 75 ~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~--~~~CP~C 116 (391)
..|-.|+-.|.+. +++.=..|++.||.+|-.-.- -..||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588888777431 112234467777777754321 2456666
No 431
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.16 E-value=1.5e+02 Score=27.56 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=5.8
Q ss_pred HHhhHHHHHHhH
Q 016340 332 TILDLEEQIRDL 343 (391)
Q Consensus 332 ~i~dL~EQ~rDl 343 (391)
+|..|+++|..|
T Consensus 83 El~~LkeElerL 94 (251)
T 3m9b_A 83 QLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444555555443
No 432
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=20.15 E-value=88 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=24.6
Q ss_pred EEEEecCChhhHHHHHHHhcCcccCCCC
Q 016340 16 SVLIKLVDQLTADEFYSNLNGKRFSPAE 43 (391)
Q Consensus 16 ~vLlkF~~~~~A~~f~~~~ng~~f~s~e 43 (391)
...+.|.+.++|+.-...+||..|..-.
T Consensus 53 ~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 53 TGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5789999999999999999999887643
No 433
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=20.07 E-value=1.1e+02 Score=25.64 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=29.8
Q ss_pred ccceeecCCC-CCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~~-~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++..+ ..+=...+.|.+..+|+.-...+||..|.
T Consensus 86 ~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 86 ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4678883221 23446889999999999999999998774
No 434
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.07 E-value=62 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=28.2
Q ss_pred ccceeecCC-CCCceEEEEecCChhhHHHHHHHhcCcccC
Q 016340 2 SSNTVRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 40 (391)
Q Consensus 2 ~~r~ir~d~-~~~~y~vLlkF~~~~~A~~f~~~~ng~~f~ 40 (391)
+++|+++.. -.++-...+.|.+.++|+.....+|| .|.
T Consensus 46 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 46 EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 457777321 23455788999999999999999998 554
No 435
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.04 E-value=1.6e+02 Score=23.14 Aligned_cols=38 Identities=11% Similarity=0.292 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016340 279 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 319 (391)
Q Consensus 279 ~~~~l~~~l~~~~~e~~~~~~ln~~L~~nq~~~~~~~~~le 319 (391)
+=.+|+.+++|+.+|++ .+|+.|......+...+..+|
T Consensus 50 KWaKL~Rk~DKl~~ele---~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEIN---NLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777776653 456666666666655555444
No 436
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.01 E-value=72 Score=23.05 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCccccccCCcCCCCCCceeecCCCcccchhhhccccccCCCcccc
Q 016340 74 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 119 (391)
Q Consensus 74 ~~tCpiCle~ld~~~~g~it~~C~H~F~~~Cl~~w~~~~CP~Cr~~ 119 (391)
.+.|+.|-..+... ....-+..||..|. .|..|...
T Consensus 5 ~~~C~~C~~~I~~~----~v~a~~~~wH~~CF------~C~~C~~~ 40 (73)
T 1wig_A 5 SSGCDSCEKYITGR----VLEAGEKHYHPSCA------LCVRCGQM 40 (73)
T ss_dssp CCSCSSSCCCCSSC----CBCCSSCCBCTTTS------CCSSSCCC
T ss_pred cCCcccCCCEecCe----eEEeCCCCCCCCcC------EeCCCCCC
Confidence 47899999877542 23346788888874 67777653
Done!