BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016342
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo
sapiens GN=VPS53 PE=1 SV=1
Length = 699
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +D F S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
A+QRT FE LA++F G + + +E P + + D +LA +G+
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDL 404
Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
+ K P A N F I+S CFEPHL Y+E +++ L E +++ V +
Sbjct: 405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450
>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo
abelii GN=VPS53 PE=2 SV=1
Length = 699
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +D F S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
A+QRT FE LA++F G + + +E P + + D +LA +G+
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDL 404
Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
+ K P A N F I+S CFEPHL Y+E +++ L E +++ V +
Sbjct: 405 DQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVAD 450
>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus
musculus GN=Vps53 PE=2 SV=1
Length = 832
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 203/353 (57%), Gaps = 19/353 (5%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +D F S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAW+KR++ EE + ++FP W + ++++FC TR +L I+ + +V LL
Sbjct: 287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
A+QRT FE LA++F G + + +E P + + D +LA +G
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDETTPEMEELALEKGEL 404
Query: 297 TEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
+ K P A N F I+S CFEPHL Y+E +++ L E +++ V +
Sbjct: 405 EQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 450
>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus
gallus GN=VPS53 PE=2 SV=1
Length = 831
Score = 218 bits (554), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 31/359 (8%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +D F S GT
Sbjct: 169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL
Sbjct: 286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345
Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
A+QRT FE LA++F G + + + +PE + + L G
Sbjct: 346 AIQRTTNFEGLLAKRFSGCTLADGT------VKKPEAPPPSTNPF-------LEDETGTE 392
Query: 297 TEE-------KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQE 348
T+E D K VP F+ I+S CFEPHL Y+E +++ L E +++ V +
Sbjct: 393 TDEIVIEKSDADKPKKPKVPDNPFH--GIVSKCFEPHLYVYIESQDKNLSELIDRFVAD 449
>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps53 PE=1 SV=1
Length = 756
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 55/368 (14%)
Query: 7 IKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKE 66
+++ AE +++ + ++ +IK LDFAK+++ T++T L RL MLV+A E+L+ + +++ E
Sbjct: 91 LQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQNQKFGE 150
Query: 67 AAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNL 126
A + ++A QL + F+ YR + +I L ++ VF F S +
Sbjct: 151 AISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESGMRGGF 210
Query: 127 ----LQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
+Q L++ C +D E ++ +CR +L + ++F E E L+ RRY W
Sbjct: 211 SPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLENLPRRYTW 270
Query: 182 IKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
K+ ++T +++ K IFPP W V + L FC++T+ L +L + +R + + +L++
Sbjct: 271 FKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQVFVASLEQ 328
Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
T+EFE + +F Y K N +E+
Sbjct: 329 TLEFESFIDHRF--------------------------------YNTKSRFNSNFEPKER 356
Query: 301 DGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNN 360
L SS FEPH T Y + + E E+ +E SQ
Sbjct: 357 QAYNAL-------------SSVFEPHYTLYFNQQSQEFSILFENFALEKQTSTDESSQ-- 401
Query: 361 VLHSSTEV 368
VL SS ++
Sbjct: 402 VLSSSIKL 409
>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog
OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3
Length = 798
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 10/253 (3%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
I I+ + + S+ +V+E+ RDIK+LD AK+++T +IT LH L +L++ VE L K+
Sbjct: 101 IGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKD 160
Query: 64 YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF-SSLGTGKETE 122
Y A QL A+ + F+AY++ +I L + +K L + D ++ TG+
Sbjct: 161 YSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQTGQ--- 217
Query: 123 ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
L +++D C V ALE +V+E V F ++L+ Y I+ + E A LDK + RY W
Sbjct: 218 ---LSDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKW 274
Query: 182 IKRRIRTNEE--IFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
R++ E + IFP WH+ L +FC TR L I+ + D L A+Q
Sbjct: 275 FVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQ 334
Query: 240 RTIEFEDELAEKF 252
T FE L ++F
Sbjct: 335 HTKMFEALLTKRF 347
>sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1
SV=1
Length = 822
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 119/258 (46%), Gaps = 9/258 (3%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
+E ++ + +E + + I LD AKK++T ++T L +L + Q + S+
Sbjct: 73 FKETQDVSASTELTISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDSYIQCNELLSQGS 132
Query: 64 YKEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
+K+ + + + L + F +Y+ + +I L +K S + ++++L +G
Sbjct: 133 FKKMVSPYKIMCSLAENTFISYKSLDEINYLLSSISRLKGDTLSKIKQNYNALFSGGNIS 192
Query: 123 E--TNLLQQLSD-ACLVVDALEPSVREELVNNFCRRELTSYEQIFE-GAELAKLDKTERR 178
E T L +L + AC ++D + S R ++++ + L ++IF E L+ RR
Sbjct: 193 EHDTALTMELREGACELLDC-DTSTRAQMIDWCLDKLLFEMKEIFRVDDEAGSLENLSRR 251
Query: 179 YAWIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL--DNLTERPDVGTLL 235
Y + K+ + N + F W + L F T K L+ +L + + P + +
Sbjct: 252 YIYFKKILNNFNSKFADYFLKDWEMAVRLTTTFYHITHKDLQTLLKREFKDKNPSIDLFM 311
Query: 236 LALQRTIEFEDELAEKFG 253
ALQ T++FE + +F
Sbjct: 312 TALQSTLDFEKYIDVRFS 329
>sp|P58165|AT2B2_OREMO Plasma membrane calcium-transporting ATPase 2 (Fragment)
OS=Oreochromis mossambicus GN=atp2b2 PE=2 SV=1
Length = 1112
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 59 ASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHV---------- 108
S R Y + A+ E V + CSH P++ R+K + +K++++
Sbjct: 601 GSFRMYSKGAS--EIVLKKCSHILNEVGEPRVFRPRDKDEMVKKVIEPMACDGLRTICVA 658
Query: 109 FSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNF--CRR 155
+ DFSS +E N+L L+ C+V +E VR E+ N C+R
Sbjct: 659 YRDFSSNPEPNWDDENNILNDLTAICVV--GIEDPVRPEVPNAIQKCQR 705
>sp|Q68EW0|OGDHL_XENLA 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis
GN=ogdhl PE=2 SV=1
Length = 1018
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 32/127 (25%)
Query: 204 YLLNIQFCKKTRKQLE--GILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSR---- 257
++ +++ C+ R++ E GI+ + E + TLL L R+ FED LA K+ + R
Sbjct: 219 FINDVEQCQWIRQKFETPGIMKFINE--EKRTLLARLIRSTRFEDFLARKWSSEKRFGLE 276
Query: 258 ---------------SSEIGLDIEEIGRPENNRQNV--SDIRK-------KYERKLAANQ 293
SSE+GL+ +G P R NV + IRK +++ KL A+
Sbjct: 277 GCEVMIPALKAIIDKSSEMGLEYVILGMPHRGRLNVLANVIRKDLDQIFCQFDPKLEASD 336
Query: 294 GNSTEEK 300
S + K
Sbjct: 337 EGSGDVK 343
>sp|Q58291|OTC_METJA Ornithine carbamoyltransferase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=argF PE=3 SV=1
Length = 305
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 29/141 (20%)
Query: 71 LEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQL 130
+ A++ L + D+ I E + KFK +K + LG G + +L
Sbjct: 118 INALSDLAHPCQILADLMTIKEYKGKFKGLK----------IAYLGDGNNVCNSLIL--- 164
Query: 131 SDACLVVD-------ALEPSVR-----EELVNNFCRRELTSYEQIFEGAELAKLDKTERR 178
A + +D EP+ + +E++NN+ LT E AE A + T+
Sbjct: 165 GSALVGMDTYVGTPKGYEPNAKVVLKAKEIINNYGEGSLTLTNDPIEAAEDADVLYTD-- 222
Query: 179 YAWIKRRI-RTNEEIFKIFPP 198
WI + EE+ KIFPP
Sbjct: 223 -VWISMGDDKDKEEVLKIFPP 242
>sp|Q9HF61|BUD3_ASHGO Bud site selection protein 3 homolog OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=BUD3 PE=3 SV=2
Length = 1478
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 123 ETNLLQQLSDACL--VVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
ETN Q+ +D C + D ++ ++E N + R T +I ELAK E +Y
Sbjct: 405 ETNEEQKEADRCYRSICDVIDSFGKDEPPNTYDTRVFTPSGKIL--TELAKGWPAELQYK 462
Query: 181 WIKRRI 186
W+KRR+
Sbjct: 463 WLKRRV 468
>sp|Q604U6|SMC_METCA Chromosome partition protein Smc OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=smc PE=3
SV=2
Length = 1169
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 15 ETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEA 73
E + +E R +L FA++ + LH + V+++E LQ A R AAA LEA
Sbjct: 460 EALAREAERQRDRLRFARERLNPARAGLHAVQGKVASLETLQRHAMGRDRSAAAAVLEA 518
>sp|Q9ULD0|OGDHL_HUMAN 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Homo sapiens
GN=OGDHL PE=1 SV=3
Length = 1010
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 33/124 (26%)
Query: 204 YLLNIQFCKKTRKQLE--GILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSR---- 257
++ +++ C+ R++ E G++ +E + TLL L R++ FED LA K+ + R
Sbjct: 211 FINDVEQCQWIRQKFETPGVMQFSSE--EKRTLLARLVRSMRFEDFLARKWSSEKRFGLE 268
Query: 258 ---------------SSEIGLDIEEIGRPENNRQNV--SDIRK-------KYERKL-AAN 292
SSE+G++ +G P R NV + IRK +++ KL AA+
Sbjct: 269 GCEVMIPALKTIIDKSSEMGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD 328
Query: 293 QGNS 296
+G+
Sbjct: 329 EGSG 332
>sp|Q5R9L8|OGDHL_PONAB 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii
GN=OGDHL PE=2 SV=2
Length = 1010
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 33/124 (26%)
Query: 204 YLLNIQFCKKTRKQLE--GILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSR---- 257
++ +++ C+ R++ E G++ +E + TLL L R++ FED LA K+ + R
Sbjct: 211 FINDVEQCQWIRQKFETPGVMQFSSE--EKRTLLARLVRSMRFEDFLARKWSSEKRFGLE 268
Query: 258 ---------------SSEIGLDIEEIGRPENNRQNV--SDIRK-------KYERKL-AAN 292
SSE+G++ +G P R NV + IRK +++ KL AA+
Sbjct: 269 GCEVMIPALKTIIDKSSEMGIENVILGMPHRGRLNVLANVIRKDLEQIFCQFDPKLEAAD 328
Query: 293 QGNS 296
+G+
Sbjct: 329 EGSG 332
>sp|O13874|YE19_SCHPO Uncharacterized NOC2 family protein C1B3.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B3.09c PE=3 SV=1
Length = 528
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 238 LQRTIEFEDELAEK---FGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQG 294
L+ TIE +LA +G +R+S +E G +NN+ N D+ K Y
Sbjct: 16 LKNTIERRKQLARSKKVYGTKNRNSHTKNKLES-GTNDNNK-NKEDLSKLYSD---VTTS 70
Query: 295 NSTEEKDGNKDLSV-----PGAGFN 314
N++ EKDG++D+SV GA N
Sbjct: 71 NTSHEKDGSEDISVLNVNSKGASLN 95
>sp|C0ZIE6|Y187_BREBN Putative ATP:guanido phosphotransferase BBR47_01870
OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=BBR47_01870 PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 104 LKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVD-ALEPSVREELVNNFCRRELTSYEQ 162
L+ +F + L + E Q+LSD L +D + P+V ++N + Q
Sbjct: 267 LEDRIFRSYGILMYARTVESKEAAQRLSDVRLGIDLGIIPNVSPLVLNELLVTTQPGFLQ 326
Query: 163 IFEGAELAKLDKTERRYAWIKRRIRTNE 190
G +L + ERR I+ R+R E
Sbjct: 327 HHAGQKLTPDQRDERRARLIRERLRVVE 354
>sp|A5E4V6|PMIP_LODEL Mitochondrial intermediate peptidase OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=OCT1 PE=3 SV=1
Length = 811
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 21/93 (22%)
Query: 13 QSETMVQEICRDI----KKLDFAKKHITTTITALHRLTML----VSAVEQLQVMASKRQY 64
Q++T+V E+ RD+ KLD+ KK L +L+ + + E ++V+ +++
Sbjct: 103 QAQTLVDEMTRDVLTHQGKLDYIKK--------LDQLSDILCRTIDVAEFIRVVHDDQKW 154
Query: 65 KEAAAQ-----LEAVNQLCSHFEAYRDIPKITE 92
+AA Q E +NQL ++ E Y ++ KI E
Sbjct: 155 VDAAQQTHEIIFEYMNQLNTNVELYANLVKILE 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,916,273
Number of Sequences: 539616
Number of extensions: 5445855
Number of successful extensions: 18206
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 18135
Number of HSP's gapped (non-prelim): 97
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)