Query 016342
Match_columns 391
No_of_seqs 125 out of 196
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2180 Late Golgi protein sor 100.0 1E-100 2E-105 793.5 34.2 344 1-384 85-435 (793)
2 PF04100 Vps53_N: Vps53-like, 100.0 1.1E-96 2E-101 745.4 33.0 310 2-351 71-383 (383)
3 PF10191 COG7: Golgi complex c 97.6 0.019 4.2E-07 63.9 24.5 317 3-383 85-414 (766)
4 PF07393 Sec10: Exocyst comple 97.5 0.016 3.4E-07 64.0 22.8 285 4-348 8-325 (710)
5 PF10475 DUF2450: Protein of u 97.4 0.0086 1.9E-07 59.1 17.5 152 2-160 67-232 (291)
6 PF06248 Zw10: Centromere/kine 96.7 1.1 2.3E-05 48.6 26.6 217 33-252 93-359 (593)
7 PF15469 Sec5: Exocyst complex 95.3 0.95 2.1E-05 41.3 15.4 108 5-115 43-151 (182)
8 PF05664 DUF810: Protein of un 91.2 29 0.00062 38.7 27.6 164 170-384 407-577 (677)
9 KOG2115 Vacuolar sorting prote 90.0 10 0.00022 43.0 15.4 113 3-116 276-402 (951)
10 PF04437 RINT1_TIP1: RINT-1 / 88.0 12 0.00026 39.6 14.2 161 153-372 3-185 (494)
11 KOG0412 Golgi transport comple 85.5 42 0.00091 37.3 16.5 96 19-114 101-202 (773)
12 KOG2176 Exocyst complex, subun 83.5 15 0.00032 41.2 12.2 68 5-72 97-164 (800)
13 COG5173 SEC6 Exocyst complex s 79.3 58 0.0013 35.4 14.4 74 178-255 285-360 (742)
14 PF04124 Dor1: Dor1-like famil 72.4 1.1E+02 0.0024 30.7 19.6 105 5-112 49-167 (338)
15 PF06046 Sec6: Exocyst complex 67.8 6 0.00013 42.3 4.2 141 180-383 115-264 (566)
16 PF03357 Snf7: Snf7; InterPro 63.2 50 0.0011 29.1 8.6 58 45-102 57-118 (171)
17 PF04924 Pox_A6: Poxvirus A6 p 56.8 2.3E+02 0.005 29.0 12.5 87 143-237 178-285 (371)
18 PF07138 DUF1386: Protein of u 53.2 82 0.0018 31.6 8.6 157 60-245 19-207 (324)
19 KOG3691 Exocyst complex subuni 51.6 2.3E+02 0.005 32.6 12.6 74 36-111 130-203 (982)
20 PF10146 zf-C4H2: Zinc finger- 51.4 1.7E+02 0.0038 28.1 10.5 44 2-45 1-44 (230)
21 KOG2346 Uncharacterized conser 49.6 60 0.0013 34.9 7.5 83 50-143 147-229 (636)
22 PF01858 RB_A: Retinoblastoma- 43.0 1.6E+02 0.0035 27.5 8.7 51 35-85 3-59 (194)
23 PF04108 APG17: Autophagy prot 41.8 3.8E+02 0.0083 27.9 12.1 43 5-47 244-290 (412)
24 KOG2218 ER to golgi transport 40.8 5.8E+02 0.013 28.8 21.0 105 147-253 262-380 (737)
25 cd07648 F-BAR_FCHO The F-BAR ( 37.6 3.8E+02 0.0082 25.7 12.0 14 9-22 71-84 (261)
26 PTZ00464 SNF-7-like protein; P 35.8 3.9E+02 0.0085 25.4 12.6 95 8-102 17-138 (211)
27 PF08771 Rapamycin_bind: Rapam 35.2 2.5E+02 0.0053 23.4 7.8 84 20-106 15-99 (100)
28 PF06580 His_kinase: Histidine 34.6 1.6E+02 0.0036 23.2 6.4 57 46-105 12-68 (82)
29 PF12128 DUF3584: Protein of u 31.1 5.2E+02 0.011 30.8 12.3 53 128-188 963-1017(1201)
30 PF12325 TMF_TATA_bd: TATA ele 30.4 3.6E+02 0.0078 23.4 12.0 91 14-109 14-117 (120)
31 cd07637 BAR_ACAP3 The Bin/Amph 28.1 5.1E+02 0.011 24.3 12.3 53 3-61 3-55 (200)
32 PF00015 MCPsignal: Methyl-acc 27.6 3.7E+02 0.008 24.0 8.4 35 5-39 82-116 (213)
33 PRK12803 flagellin; Provisiona 27.4 3.4E+02 0.0073 27.6 8.7 83 17-114 48-132 (335)
34 COG4942 Membrane-bound metallo 27.0 7.7E+02 0.017 26.0 12.3 72 2-76 52-126 (420)
35 PRK12807 flagellin; Provisiona 26.4 3.7E+02 0.0081 26.3 8.7 83 17-114 48-132 (287)
36 PF08385 DHC_N1: Dynein heavy 25.9 8E+02 0.017 25.9 14.2 20 72-91 329-348 (579)
37 COG1344 FlgL Flagellin and rel 25.0 3.6E+02 0.0078 27.3 8.5 75 17-106 48-123 (360)
38 PRK08026 flagellin; Validated 24.0 3.7E+02 0.008 29.2 8.6 76 16-106 49-125 (529)
39 KOG3230 Vacuolar assembly/sort 23.0 6.7E+02 0.014 23.9 11.0 38 63-100 94-131 (224)
40 KOG2141 Protein involved in hi 22.2 3.1E+02 0.0067 31.0 7.6 57 13-72 330-388 (822)
41 PF04108 APG17: Autophagy prot 21.9 9.1E+02 0.02 25.1 12.4 28 13-40 238-265 (412)
42 PRK12808 flagellin; Provisiona 21.9 4.8E+02 0.01 28.0 8.7 28 17-44 48-75 (476)
43 PRK10807 paraquat-inducible pr 21.6 1.1E+03 0.023 25.7 11.7 91 15-105 419-514 (547)
44 PRK13589 flagellin; Provisiona 21.5 4.6E+02 0.01 28.8 8.7 75 17-106 50-125 (576)
45 PRK13588 flagellin B; Provisio 21.2 4.6E+02 0.0099 28.4 8.7 82 17-113 50-133 (514)
46 KOG3543 Ca2+-dependent activat 21.0 1.2E+03 0.026 26.2 13.2 52 314-369 885-936 (1218)
47 PF01702 TGT: Queuine tRNA-rib 20.5 3.1E+02 0.0067 25.9 6.6 47 24-70 189-235 (238)
48 PF09577 Spore_YpjB: Sporulati 20.5 4.8E+02 0.011 25.2 7.9 179 47-255 4-190 (232)
49 KOG4331 Polytopic membrane pro 20.4 7.9E+02 0.017 28.3 10.4 75 3-79 187-263 (865)
50 PRK12806 flagellin; Provisiona 20.2 5E+02 0.011 27.7 8.7 82 17-113 50-133 (475)
No 1
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-100 Score=793.52 Aligned_cols=344 Identities=52% Similarity=0.802 Sum_probs=316.3
Q ss_pred CcchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh
Q 016342 1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH 80 (391)
Q Consensus 1 ~~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~ 80 (391)
+++|++||++|++||.||++||+|||+||+||||||+|||+|+||||||+||++|+.++.+|+|+|+|++|+||++|++|
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc-hhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHH
Q 016342 81 FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET-EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTS 159 (391)
Q Consensus 81 F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~-~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~e 159 (391)
|++|++||+|++|++.++.+|..|..||+.||+++|+|+++ ..+...+.|.|||+|+|+|+|++|+++|+|||.+||.+
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~e 244 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEE 244 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877 33445688999999999999999999999999999999
Q ss_pred HHHhcCC-cccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016342 160 YEQIFEG-AELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLA 237 (391)
Q Consensus 160 Y~~iF~~-~E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~a 237 (391)
|.+||++ .|+||||||+|||+||||.|++|+++| .|||++|+|++|||.+||..||+||..||.++++++||++||.|
T Consensus 245 y~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~A 324 (793)
T KOG2180|consen 245 YEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFA 324 (793)
T ss_pred HHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHH
Confidence 9999995 799999999999999999999999999 69999999999999999999999999999988899999999999
Q ss_pred HHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCccccc
Q 016342 238 LQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRR 317 (391)
Q Consensus 238 Lq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g 317 (391)
||+|++||++|++||+|++.... +..++. -.|...++|+|
T Consensus 325 lq~TleFE~~L~kRF~g~~~~~~----------~~~ns~------------------------------~~~k~~~~f~~ 364 (793)
T KOG2180|consen 325 LQSTLEFEKFLDKRFSGGTLTGK----------PEKNSQ------------------------------FEPKERFNFEG 364 (793)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCC----------Cccccc------------------------------cccccccchhh
Confidence 99999999999999998755411 111111 00112368999
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccc----ccCCCCccccChHHHHHHHHHHHHHHHHhcc
Q 016342 318 IISSCFEPHLTAYVELEERTLMENLEKLVQEETWDI----EEGSQNNVLHSSTEVSIRTYIMILIILHVMC 384 (391)
Q Consensus 318 ~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~----~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~~ 384 (391)
+||+||||||.+||++||++|+++|++|+++++|+. +.+..+.|+|||+|||+.+.+.++|+.++.-
T Consensus 365 ~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~ 435 (793)
T KOG2180|consen 365 AISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSELSE 435 (793)
T ss_pred HHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999973 3356799999999999888899999998753
No 2
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=100.00 E-value=1.1e-96 Score=745.43 Aligned_cols=310 Identities=52% Similarity=0.842 Sum_probs=282.0
Q ss_pred cchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc
Q 016342 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF 81 (391)
Q Consensus 2 ~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F 81 (391)
++|.+||++|++||+||++||+|||+||+||||||.|||+||||||||+||++|+.++++|+|+|||++|+||++|++||
T Consensus 71 ~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F 150 (383)
T PF04100_consen 71 EKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHF 150 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhh-hhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHHH
Q 016342 82 EAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEET-NLLQQLSDACLVVDALEPSVREELVNNFCRRELTSY 160 (391)
Q Consensus 82 ~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~-~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~eY 160 (391)
++|++||+|++|++++..|++.|+.||+.||+.++++.+..++ ....+|.+||.|||+||+++|++||+|||++||++|
T Consensus 151 ~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY 230 (383)
T PF04100_consen 151 KPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY 230 (383)
T ss_pred HcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998743333222 245789999999999999999999999999999999
Q ss_pred HHhcC-CcccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016342 161 EQIFE-GAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLAL 238 (391)
Q Consensus 161 ~~iF~-~~E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL 238 (391)
+++|+ ++|+||||||+|||+||||+|++|++.+ .+||++|+||++||.+||.+||+||..+|++.++++||++||+||
T Consensus 231 ~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL 310 (383)
T PF04100_consen 231 RRIFRENDEAASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKAL 310 (383)
T ss_pred HHHHcccccccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Confidence 99998 6799999999999999999999999986 899999999999999999999999999999889999999999999
Q ss_pred HHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCcccccc
Q 016342 239 QRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRI 318 (391)
Q Consensus 239 q~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g~ 318 (391)
|+|++||++|++||+|.+...+ .. +.. . .......+|+|+
T Consensus 311 q~T~~FE~~L~~rF~~~~~~~~---~~----------------~~~-------------------~--e~~~~~~~f~g~ 350 (383)
T PF04100_consen 311 QKTLEFEKELAKRFAGSTDESQ---EI----------------EKK-------------------K--EMKEIAENFKGI 350 (383)
T ss_pred HHHHHHHHHHHHHhcccccccc---cc----------------ccc-------------------c--cccccccccccc
Confidence 9999999999999987633200 00 000 0 000012379999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcccc
Q 016342 319 ISSCFEPHLTAYVELEERTLMENLEKLVQEETW 351 (391)
Q Consensus 319 IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~ 351 (391)
||+||||||++||++|||+|+++|++|+++++|
T Consensus 351 IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 351 ISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999998
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=97.60 E-value=0.019 Score=63.90 Aligned_cols=317 Identities=14% Similarity=0.213 Sum_probs=198.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcc
Q 016342 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE 82 (391)
Q Consensus 3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~ 82 (391)
++..|+++..+-|..-..--.-+.+||.+|.++..+-.+|+==.-..+...++..+....+|..+|.-|..|.+=+..|
T Consensus 85 ~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l- 163 (766)
T PF10191_consen 85 QMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVL- 163 (766)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-
Confidence 3445555544444322233345888999999999999999987777777778888999999999999999998888766
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhHHHHHH
Q 016342 83 AYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ 162 (391)
Q Consensus 83 ~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L~eY~~ 162 (391)
.++|.-.+=...++.+++.|...+-...-..+.... ....+....|...+|.. ..+.++|++-.......
T Consensus 164 --~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~------~~~~~~~~~if~~i~R~--~~l~~~Y~~~r~~~l~~ 233 (766)
T PF10191_consen 164 --QDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD------VDAAKEYVKIFSSIGRE--PQLEQYYCKCRKAPLQR 233 (766)
T ss_pred --cCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHH
Confidence 467777776677777777776655443333332211 12233444556666532 34556666655555555
Q ss_pred hcCC---cc--cccccchhhhHHHHHHhhhhh-hh-hc--CcCCCCcc-ccHHHHHHHHHHH---HHHHHHHHHhccCCC
Q 016342 163 IFEG---AE--LAKLDKTERRYAWIKRRIRTN-EE-IF--KIFPPSWH-VPYLLNIQFCKKT---RKQLEGILDNLTERP 229 (391)
Q Consensus 163 iF~~---~E--~~~Ldni~RRy~Wfkr~L~~~-e~-~~--~iFP~~W~-v~~~L~~~Fc~~T---r~dL~~iL~~~~~~~ 229 (391)
.... .+ ....+-+. .|+-.+|... ++ .| .+||..-. ++.-++..+..++ ...|...+.......
T Consensus 234 ~W~~~~~~~~~~~~~~~L~---~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~ 310 (766)
T PF10191_consen 234 LWQEYCQSDQSQSFAEWLP---SFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPET 310 (766)
T ss_pred HHHHHhhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchh
Confidence 5321 11 11111122 4555666663 33 46 69999876 4444556666655 445666665433333
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCC
Q 016342 230 DVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVP 309 (391)
Q Consensus 230 dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~ 309 (391)
....|+..-+.|..|=+.+...|...... . + .. +.
T Consensus 311 ~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~------~--------~---l~----~~------------------------ 345 (766)
T PF10191_consen 311 KLETLIELYQATEHFARNLEHLLSSLPGE------S--------N---LS----KV------------------------ 345 (766)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccc------c--------c---hH----HH------------------------
Confidence 47899999999999999999999764111 0 0 00 00
Q ss_pred CCCcccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHHHHHHHHHHHHHHhc
Q 016342 310 GAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVM 383 (391)
Q Consensus 310 ~~~~~F~g~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~ 383 (391)
....+.|=.-|.||..-|=+.|.+.|...+..+..... +.. +.-..+-.|...+|.-...-+..|.++.
T Consensus 346 ---~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~~-~~~-d~v~~L~~s~~k~f~lae~Av~RC~~fT 414 (766)
T PF10191_consen 346 ---EELLQALFEPFKPYQQRYGELERRFLSAQLSALDLESA-ELS-DAVRRLEESIPKLFGLAEEAVDRCIAFT 414 (766)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 01224566677788889999999999999886654321 110 1123445566777777777777777664
No 4
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=97.54 E-value=0.016 Score=63.96 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=187.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHh-h---cCHHHHHHHHHHHHHH
Q 016342 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA--VEQLQVMAS-K---RQYKEAAAQLEAVNQL 77 (391)
Q Consensus 4 I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a--~~qL~~~~~-~---r~Y~e~a~lL~av~~L 77 (391)
.+.+-++-...-..|..|..-...++.-|.+-..++..++.++-+.+. +..|..+.. - .+-.++|..++-+..+
T Consensus 8 f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~l 87 (710)
T PF07393_consen 8 FQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRL 87 (710)
T ss_pred HHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHH
Confidence 344555555566677777777888888889989999999999876664 457776632 2 2337888888766666
Q ss_pred HhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHhH
Q 016342 78 CSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRREL 157 (391)
Q Consensus 78 ~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~L 157 (391)
. +...++|........+......+...+...|+.....+. ...|+++-.|+-.++... .+|+.|+++.-
T Consensus 88 s---~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d------~~~M~~~A~vL~~fngg~--~~i~~fi~k~~ 156 (710)
T PF07393_consen 88 S---KELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGD------YERMKEFAKVLLEFNGGS--SCIDFFINKHE 156 (710)
T ss_pred H---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCc--HHHHHHHHhCh
Confidence 6 333388888899999999999999999999998764332 367888888888888766 68888888642
Q ss_pred HHH--HH---------------hcCCc--ccccccchhhhHHHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHH-H
Q 016342 158 TSY--EQ---------------IFEGA--ELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTR-K 216 (391)
Q Consensus 158 ~eY--~~---------------iF~~~--E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr-~ 216 (391)
--+ .. +..++ .....+.++.=|..++..++.-...- .|||+.=.|=..++..++.--= .
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~ 236 (710)
T PF07393_consen 157 FFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQE 236 (710)
T ss_pred hhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 222 11 11111 11223345555566666655544434 7999977777776666655433 3
Q ss_pred HHHHHHHhccCCCCHHHHHHHHH----HhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhc
Q 016342 217 QLEGILDNLTERPDVGTLLLALQ----RTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAAN 292 (391)
Q Consensus 217 dL~~iL~~~~~~~dv~~Ll~aLq----~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~ 292 (391)
-+..+|... ...+....+.+|+ .|..|=..|..-+.+.... +.++ +
T Consensus 237 ~i~~lL~~a-~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~-------------~~~~---------~------- 286 (710)
T PF07393_consen 237 YIESLLEEA-SSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPD-------------PDSS---------D------- 286 (710)
T ss_pred HHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-------------ccch---------H-------
Confidence 356666543 3457777777776 4555555554443221000 0000 0
Q ss_pred cCCCcccccCCCCCCCCCCCcccccccccccchhh--hHHHHHHHHHHHHHHHHHhhc
Q 016342 293 QGNSTEEKDGNKDLSVPGAGFNFRRIISSCFEPHL--TAYVELEERTLMENLEKLVQE 348 (391)
Q Consensus 293 ~~~~~~~~~~~k~~~~~~~~~~F~g~IS~cFEpyL--~~yI~~qdk~L~e~l~~~i~e 348 (391)
.......+-++|+||| ..|++.|-+.|.+.+...++.
T Consensus 287 -------------------~~~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~ 325 (710)
T PF07393_consen 287 -------------------SAFLDQLVESLFEPYLEDDEYLEEEKRSLKELLESILSR 325 (710)
T ss_pred -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 1124568999999999 999999999999998877754
No 5
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=97.45 E-value=0.0086 Score=59.07 Aligned_cols=152 Identities=14% Similarity=0.279 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHhHHHHHHHHHhhhh--------------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 016342 2 YKIREIKNKAEQSETMVQEICRDIKK--------------LDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEA 67 (391)
Q Consensus 2 ~~I~~Ik~kA~~SE~~V~eit~dIk~--------------LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~ 67 (391)
+.|.+|++....+=..|+++=+.++. +..-|+||......|+.+..+..+...++.++...+|..+
T Consensus 67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~A 146 (291)
T PF10475_consen 67 SSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGA 146 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 35566666666666655555444443 3444677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHhcChhHHHH
Q 016342 68 AAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREE 147 (391)
Q Consensus 68 a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~ 147 (391)
..++....++++ .|+.+.-++.|..++..+...+..++-.+|...-. .-++.....+-+|...++- -..+.++
T Consensus 147 l~li~~~~~~l~---~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk-~~~~~dk 219 (291)
T PF10475_consen 147 LDLIEECQQLLE---ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGK-TQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHH---hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 999999999995 46666777788888888888777777777765421 1123345677788877663 2457777
Q ss_pred HHHHHHHHhHHHH
Q 016342 148 LVNNFCRRELTSY 160 (391)
Q Consensus 148 li~wf~~~~L~eY 160 (391)
+...|++-....-
T Consensus 220 l~~~f~~~i~~~~ 232 (291)
T PF10475_consen 220 LQMHFTSAIHSTT 232 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766544433
No 6
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=96.74 E-value=1.1 Score=48.58 Aligned_cols=217 Identities=16% Similarity=0.223 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 016342 33 KHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELREKFKNIKQILKSHVFS 110 (391)
Q Consensus 33 kNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~Yksi~~I~~L~~~~~~i~~~L~~qI~~ 110 (391)
+..+..+.+|++|+-+-.++++.+.....++|-++|..|..+..++..- ..+.+..-+..|..++...++.|..++-+
T Consensus 93 ~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~ 172 (593)
T PF06248_consen 93 EENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSE 172 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788899999999999999999999999999999999999876 34556667788899999999999999888
Q ss_pred hccccCC----CC------C-c--------hhhhh--hHhHhhhhHHHHhcChh---HHHHHHHHHHHHhHH-HHHHhcC
Q 016342 111 DFSSLGT----GK------E-T--------EETNL--LQQLSDACLVVDALEPS---VREELVNNFCRRELT-SYEQIFE 165 (391)
Q Consensus 111 DF~~~~~----~~------~-~--------~~~~~--~~~L~~aC~vvD~L~~~---~k~~li~wf~~~~L~-eY~~iF~ 165 (391)
.|+.... +. . . ..+.. ....-.|..+++.|+.. +.+.|++.++.-.+. +....+.
T Consensus 173 ~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~ 252 (593)
T PF06248_consen 173 EWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSV 252 (593)
T ss_pred HHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 8875421 01 0 0 00111 23444666666666653 334444444433332 1111111
Q ss_pred C-ccc-c--------------cccchhhhHHHHHHhhhhhhhhcCcCCCCccccHHHHHHHHHHHHHHHHHHH-Hhc-cC
Q 016342 166 G-AEL-A--------------KLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL-DNL-TE 227 (391)
Q Consensus 166 ~-~E~-~--------------~Ldni~RRy~Wfkr~L~~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL-~~~-~~ 227 (391)
. .+. + .--+.+--|.=++.++....++...-|..|. .|...|-.....+|...| ... ..
T Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~---~l~~~~g~~i~~~ls~~lI~~~L~~ 329 (593)
T PF06248_consen 253 EESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDS---SLSESFGDHIWPRLSELLISNCLSP 329 (593)
T ss_pred cccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchh---HHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 1 111 1 1113445576676666665554433466676 788888888888886555 322 21
Q ss_pred --CCC---HHHHHHHHHHhHHHHHHHHHHh
Q 016342 228 --RPD---VGTLLLALQRTIEFEDELAEKF 252 (391)
Q Consensus 228 --~~d---v~~Ll~aLq~T~~FE~~L~~rF 252 (391)
+-+ ...+-..+..|.+||..|..-.
T Consensus 330 aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lg 359 (593)
T PF06248_consen 330 AIPTSASELQEFEEVLESVEEFEEALKELG 359 (593)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112 3456778899999999998653
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=95.35 E-value=0.95 Score=41.29 Aligned_cols=108 Identities=12% Similarity=0.279 Sum_probs=84.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccC
Q 016342 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY 84 (391)
Q Consensus 5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y 84 (391)
..+.+...++...-..+-+.|-.--.--.++-.++..|+|.+-|.+.=.+|+..+.++.|..++.-+.-++.+. +.|
T Consensus 43 ~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~---~~~ 119 (182)
T PF15469_consen 43 EKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLF---EKY 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHH---HHh
Confidence 33444444444444444444444444446888999999999999999999999999999999999998777776 677
Q ss_pred C-CchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016342 85 R-DIPKITELREKFKNIKQILKSHVFSDFSSL 115 (391)
Q Consensus 85 k-si~~I~~L~~~~~~i~~~L~~qI~~DF~~~ 115 (391)
+ .++-+..++.+++.+-..++.++...+...
T Consensus 120 ~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~ 151 (182)
T PF15469_consen 120 KQQVPVFQKVWSEVEKIIEEFREKLWEKLLSP 151 (182)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6 899999999999999999999888866553
No 8
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=91.17 E-value=29 Score=38.65 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=112.2
Q ss_pred ccccchhhhHHHHHHhhhh-h--h-hhc-CcCCCCccccHH--HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhH
Q 016342 170 AKLDKTERRYAWIKRRIRT-N--E-EIF-KIFPPSWHVPYL--LNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTI 242 (391)
Q Consensus 170 ~~Ldni~RRy~Wfkr~L~~-~--e-~~~-~iFP~~W~v~~~--L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~ 242 (391)
..-++.....+=+-+-+.. . | +.| .+| ..|+=.-. -+..+...=-.+|...|... ..++.+++ ..|+..-
T Consensus 407 ~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiL-k~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~-~~LT~d~v-~VL~aA~ 483 (677)
T PF05664_consen 407 RSDSEPSHVLAQLAKEIKELAKKEKEVFSPIL-KRWHPNAAGVAAATLHSCYGNELKQFLSGV-THLTPDVV-EVLQAAD 483 (677)
T ss_pred cccccchHHHHHHHHHHHHHHHHhHHhcCchh-cccCchHHHHHHHHHHHHHHHHHHHHHccc-ccCCHHHH-HHHHHHH
Confidence 3455666666777666664 2 2 235 565 56664433 33556666677888888743 34555544 8999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCcccccccccc
Q 016342 243 EFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRRIISSC 322 (391)
Q Consensus 243 ~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g~IS~c 322 (391)
.||+.|...-+-. . +++ ++ +....-+|| -|-+.
T Consensus 484 ~LEk~Lvq~~~~~-------~--edg----------------------------------gk--~~~rem~Py--~vE~~ 516 (677)
T PF05664_consen 484 KLEKALVQMVSVD-------C--EDG----------------------------------GK--SLIREMPPY--EVESL 516 (677)
T ss_pred HHHHHHHHHHHhh-------c--ccc----------------------------------cc--ccccCCCce--eHHHH
Confidence 9999999775211 0 000 01 011112344 36778
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHHHHHHHHHHHHHHhcc
Q 016342 323 FEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMILIILHVMC 384 (391)
Q Consensus 323 FEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~~ 384 (391)
+.+++.-||+.+.+.+.+-+++.++.++|.+... .-.--||..|+|--+..++-+..+++.
T Consensus 517 i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~-~e~hs~SvVEvfri~~eTvd~ff~L~~ 577 (677)
T PF05664_consen 517 ISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSK-EERHSPSVVEVFRIFNETVDQFFQLPW 577 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC-CCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999999999977643 356678999999889999999988764
No 9
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=10 Score=42.98 Aligned_cols=113 Identities=14% Similarity=0.331 Sum_probs=92.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhhhHh--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 016342 3 KIREIKNKAEQSETMVQEICRDIKKLD--------------FAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA 68 (391)
Q Consensus 3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD--------------~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a 68 (391)
..++|++++.++=+-|+++-..|+.+| .+.+|++..-.-|+=+.-+-.+...++.++....|-+|.
T Consensus 276 ~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~AL 355 (951)
T KOG2115|consen 276 SLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGAL 355 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHH
Confidence 456788888888888888888777776 456677776666666677778888999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 016342 69 AQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLG 116 (391)
Q Consensus 69 ~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~ 116 (391)
++..-+.+++.- ...-+|+.+..|...+..+...+-..+..+|..+.
T Consensus 356 dlI~t~q~~L~g-~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~ 402 (951)
T KOG2115|consen 356 DLIKTIQELLKG-SELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS 402 (951)
T ss_pred HHHHHHHHHHhh-hhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998855 56778999999999988888888887888887653
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.96 E-value=12 Score=39.65 Aligned_cols=161 Identities=16% Similarity=0.271 Sum_probs=89.0
Q ss_pred HHHhHHHHHHhc----CCc-ccccccchhhhHHHHHHhhhhhhh----hc-CcCCC----CccccHHHHHHHHHHHHHHH
Q 016342 153 CRRELTSYEQIF----EGA-ELAKLDKTERRYAWIKRRIRTNEE----IF-KIFPP----SWHVPYLLNIQFCKKTRKQL 218 (391)
Q Consensus 153 ~~~~L~eY~~iF----~~~-E~~~Ldni~RRy~Wfkr~L~~~e~----~~-~iFP~----~W~v~~~L~~~Fc~~Tr~dL 218 (391)
++-.+.++..-| .|+ +..++|+.+==|+|+.+.+.+|.. .. .++-+ +..+...+...-...-|+-|
T Consensus 3 ~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl 82 (494)
T PF04437_consen 3 IDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKL 82 (494)
T ss_dssp HHHHCHHHHHHHHHHT----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHH
Confidence 333444444444 433 678999999778888888888743 22 34444 23444445555555555555
Q ss_pred HHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcc
Q 016342 219 EGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTE 298 (391)
Q Consensus 219 ~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~ 298 (391)
...|. ...-+..+|...+..++.|++.|...|+-..
T Consensus 83 ~~~l~--~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~------------------------------------------ 118 (494)
T PF04437_consen 83 RSDLP--ELLDDPSLLSHLIDEILSFDKELRSLYGYPG------------------------------------------ 118 (494)
T ss_dssp HHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------------------------------------------
T ss_pred HHHHH--hhccChhHHHHHHHHHHHHHHHHHHHcCCCC------------------------------------------
Confidence 55553 1234678999999999999999999986430
Q ss_pred cccCCCCCCCCCCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHhhccc-cccc-----cCCCCccccChHHHHH
Q 016342 299 EKDGNKDLSVPGAGFNFRRIISSCF--EPHLTAYVELEERTLMENLEKLVQEET-WDIE-----EGSQNNVLHSSTEVSI 370 (391)
Q Consensus 299 ~~~~~k~~~~~~~~~~F~g~IS~cF--EpyL~~yI~~qdk~L~e~l~~~i~e~~-~~~~-----~~~~~~Vl~Ss~dLF~ 370 (391)
...|....+| +.++..|++.|.+.=.+.++.++..+. |..+ .+.+..-.|-||+=|+
T Consensus 119 ---------------d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~ 183 (494)
T PF04437_consen 119 ---------------DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFV 183 (494)
T ss_dssp ---------------------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHH
T ss_pred ---------------ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHH
Confidence 0225556666 678999999999999999999887554 6443 1334455688888775
Q ss_pred HH
Q 016342 371 RT 372 (391)
Q Consensus 371 ~~ 372 (391)
..
T Consensus 184 ~L 185 (494)
T PF04437_consen 184 KL 185 (494)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=42 Score=37.35 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=74.1
Q ss_pred HHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------hhcccCCCchHHHH
Q 016342 19 QEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC------SHFEAYRDIPKITE 92 (391)
Q Consensus 19 ~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~------~~F~~Yksi~~I~~ 92 (391)
..+..+|++||.||.=+-.++.--+-+.-|-++.+-+...+...+|..+|..+.-...+- .+++.-....+|..
T Consensus 101 e~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~ 180 (773)
T KOG0412|consen 101 ETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISD 180 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhh
Confidence 455689999999999888888777778888899999999999999999999888765442 35666677777766
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 016342 93 LREKFKNIKQILKSHVFSDFSS 114 (391)
Q Consensus 93 L~~~~~~i~~~L~~qI~~DF~~ 114 (391)
=.+.+...+..|..-+.+.|..
T Consensus 181 ~~~~L~~a~e~L~~l~~~~f~e 202 (773)
T KOG0412|consen 181 PYETLKEAKERLSKLFKERFTE 202 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776655555543
No 12
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.48 E-value=15 Score=41.16 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=52.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 016342 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLE 72 (391)
Q Consensus 5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~ 72 (391)
.+...+-.++-.-+.....|+.+.-.-+||+|.+|..++.=--....+..|+++++.|+|=-+-..+.
T Consensus 97 sd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle 164 (800)
T KOG2176|consen 97 SDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE 164 (800)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34444445555566667888999999999999999999997667788899999999999975544443
No 13
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=79.35 E-value=58 Score=35.45 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=53.7
Q ss_pred hHHHHHHhhhhh-hhhcCcCCCCccccHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHHHHHHHHHhCCC
Q 016342 178 RYAWIKRRIRTN-EEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILD-NLTERPDVGTLLLALQRTIEFEDELAEKFGGD 255 (391)
Q Consensus 178 Ry~Wfkr~L~~~-e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~-~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~ 255 (391)
|.-|+-+-|.-. +.-...|||+|++-. .|...=-+-|..+.. .-...++...+|.-|.--.+|-+.+...|+..
T Consensus 285 nmDfIf~dL~~i~e~i~~~~pp~~NI~~----~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~ 360 (742)
T COG5173 285 NMDFIFKDLSFIRENISLSFPPFDNILT----LYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIESKFNFI 360 (742)
T ss_pred hhHHHHHHHHHHHHHccccCCchHHHHH----HHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhCCcc
Confidence 344777777774 445689999999744 455555555656554 44567888889998888889999999999765
No 14
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=72.43 E-value=1.1e+02 Score=30.72 Aligned_cols=105 Identities=14% Similarity=0.267 Sum_probs=67.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHH----------HhhcCHHHHHHH
Q 016342 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHIT----TTITALHRLTMLVSAVEQLQVM----------ASKRQYKEAAAQ 70 (391)
Q Consensus 5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT----~SIT~LkrL~MLv~a~~qL~~~----------~~~r~Y~e~a~l 70 (391)
..|...-...+.-+.+|...|-+|+.+=.... .....-+...-+..-.++|..+ ..+..|.|+-.+
T Consensus 49 ~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel 128 (338)
T PF04124_consen 49 SDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALEL 128 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHH
Confidence 44555555556667777777777665422222 1122233333333444444333 356799999999
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016342 71 LEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF 112 (391)
Q Consensus 71 L~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF 112 (391)
...+..|. ..|.++|-|+.+..++......+..+++.-+
T Consensus 129 ~~~~~~L~---~~~~~~~lv~~i~~ev~~~~~~ml~~Li~~L 167 (338)
T PF04124_consen 129 SAHVRRLQ---SRFPNIPLVKSIAQEVEAALQQMLSQLINQL 167 (338)
T ss_pred HHHHHHHH---HhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 5566799999999998777777777777643
No 15
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=67.84 E-value=6 Score=42.28 Aligned_cols=141 Identities=13% Similarity=0.232 Sum_probs=38.6
Q ss_pred HHHHHhhhhhhhhc-CcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCC
Q 016342 180 AWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRS 258 (391)
Q Consensus 180 ~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~ 258 (391)
.|+..=|....... ..|||+|+|=...+..+=..-..+|..+ ...+++...++.-|.=...+-..|.+-+...
T Consensus 115 ~~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~~l---~~~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~--- 188 (566)
T PF06046_consen 115 RWVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQEL---ISPDLEANDLLSLLSWVNTYPSIMGHPDLAI--- 188 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHH---ccCCCCHHHHhhheechhhChHhhcCCcccc---
Confidence 38888888866654 8999999996655554444444444444 2345666666655544333333222211100
Q ss_pred CCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCCcccccCCCCCCCCCCCccccc-ccccccchhhhHHHHHHHHH
Q 016342 259 SEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFNFRR-IISSCFEPHLTAYVELEERT 337 (391)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~F~g-~IS~cFEpyL~~yI~~qdk~ 337 (391)
.+ ...- +....=+.-+.-|+.....+
T Consensus 189 ------~~-----------------------------------------------~l~plL~~~~~~~L~~~Yl~~~~~~ 215 (566)
T PF06046_consen 189 ------KE-----------------------------------------------QLGPLLPDEKLEELEDDYLSRIQKK 215 (566)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ------hh-----------------------------------------------hccCCCChhHHHHHHHHHHHHHHHH
Confidence 00 0000 11122256778899999999
Q ss_pred HHHHHHHHhhccc--c----ccc-cCCCCccccChHHHHHHHHHHHHHHHHhc
Q 016342 338 LMENLEKLVQEET--W----DIE-EGSQNNVLHSSTEVSIRTYIMILIILHVM 383 (391)
Q Consensus 338 L~e~l~~~i~e~~--~----~~~-~~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~ 383 (391)
|.+-+.+++..+. | +++ +..|..+.|.+.|+| .|+-|-+.+.
T Consensus 216 ~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~dif----qmi~qql~va 264 (566)
T PF06046_consen 216 MKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIF----QMINQQLDVA 264 (566)
T ss_dssp HHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHH----HHHHHHHHHH
Confidence 9999999997654 2 333 456788888888888 4454444443
No 16
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=63.18 E-value=50 Score=29.07 Aligned_cols=58 Identities=12% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHH
Q 016342 45 LTMLVSAVEQLQVMAS----KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQ 102 (391)
Q Consensus 45 L~MLv~a~~qL~~~~~----~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~ 102 (391)
+..+.+...+|..+.. .....+++..|.....++.-..+..+++.|..+.+.+.....
T Consensus 57 ~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e 118 (171)
T PF03357_consen 57 LEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEME 118 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3344444444444433 244555556666666666656667778888888777666544
No 17
>PF04924 Pox_A6: Poxvirus A6 protein ; InterPro: IPR007008 This is a family of poxvirus A6 proteins have no known function.
Probab=56.82 E-value=2.3e+02 Score=29.00 Aligned_cols=87 Identities=18% Similarity=0.309 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHH------hHHHHHHhcC-Ccc-------------cccccchhhhH-HHHHHhhhhhhhhcCcCCCCcc
Q 016342 143 SVREELVNNFCRR------ELTSYEQIFE-GAE-------------LAKLDKTERRY-AWIKRRIRTNEEIFKIFPPSWH 201 (391)
Q Consensus 143 ~~k~~li~wf~~~------~L~eY~~iF~-~~E-------------~~~Ldni~RRy-~Wfkr~L~~~e~~~~iFP~~W~ 201 (391)
.+-=++|.-|-+. -|+||+++|. ++| .++.+....|| .|||++|-+. -+|--+==
T Consensus 178 NYllKiIAvFds~LvtDK~KL~EYreiftiS~es~i~GIrCisdlei~si~~~nnKYv~FfKKiL~~v----ilFQn~dl 253 (371)
T PF04924_consen 178 NYLLKIIAVFDSDLVTDKEKLEEYREIFTISTESIIHGIRCISDLEIPSIDIDNNKYVSFFKKILSNV----ILFQNNDL 253 (371)
T ss_pred hhHHHHHHHHhhhhhhchhhHHHHHHHHhhhHHHHHHHhhhhhcccccceecccchHHHHHHHHhCce----EEeecCCC
Confidence 4444555555433 4899999998 665 34666667787 5778888652 22322222
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016342 202 VPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLA 237 (391)
Q Consensus 202 v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~a 237 (391)
=|+.++..+|++-- -+-++.+.++.+..|+..
T Consensus 254 n~~~F~~ivsKLy~----liy~e~ktN~~l~~L~~d 285 (371)
T PF04924_consen 254 NSQKFANIVSKLYV----LIYNEFKTNPELGYLLRD 285 (371)
T ss_pred CHHHHHHHHHHHHH----HHHHHHhcCHHHHHHHHH
Confidence 34556666665432 222345555666555443
No 18
>PF07138 DUF1386: Protein of unknown function (DUF1386); InterPro: IPR009815 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf11; it is a family of uncharacterised viral proteins.
Probab=53.17 E-value=82 Score=31.63 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=95.4
Q ss_pred hhcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHhHhhhhHHHHh
Q 016342 60 SKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDA 139 (391)
Q Consensus 60 ~~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~ 139 (391)
--++|+|.-.++.+|.+-+++ +| |....-+.+.+..-+.. ..|.. -..+||.++|+
T Consensus 19 ~h~~yGEsyhlyRIv~E~lt~--sY--v~~~Sci~Rdi~taRrl------------~~G~~--------~fd~A~~~lD~ 74 (324)
T PF07138_consen 19 VHKRYGESYHLYRIVQEHLTN--SY--VGGASCIERDIATARRL------------NSGEL--------SFDDARQCLDA 74 (324)
T ss_pred HHhhcchHHHHHHHHHHHHHH--hh--cCCchHHHHHHHHHHHH------------hcCCC--------cHHHHHHHhcc
Confidence 356899999999999998876 44 22233333444444431 11211 13488999998
Q ss_pred cChhHHHHHHHHHHH-----------HhHHHH-------------HHhcC-Ccc-------cccccchhhhHHHHHHhhh
Q 016342 140 LEPSVREELVNNFCR-----------RELTSY-------------EQIFE-GAE-------LAKLDKTERRYAWIKRRIR 187 (391)
Q Consensus 140 L~~~~k~~li~wf~~-----------~~L~eY-------------~~iF~-~~E-------~~~Ldni~RRy~Wfkr~L~ 187 (391)
.++.+.|..||.. .-|.+. .+||. ++. .+.|.-+-.||.-|-|.-+
T Consensus 75 --~~s~~~L~~Wy~~G~s~gl~~~v~~vL~~Id~~~pl~~R~~~g~~i~~ld~~~~i~~~~~~~Lq~~i~~F~~f~~~~~ 152 (324)
T PF07138_consen 75 --GDSAERLSTWYSCGESSGLCADVQEVLAEIDAHVPLEKRVQRGGQIFALDNFLEIHENVTDLLQTIIGRFIHFVRCGK 152 (324)
T ss_pred --HHHHHHHHHHHhcCCccccCHHHHHHHHHHhccCCHHHHhccccccccchhhhhhhHhHHHHHHHHHHHHHHHhhhhH
Confidence 4566788899842 223333 34554 221 2456667778777766421
Q ss_pred hhhhhcCcCCCCccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHH
Q 016342 188 TNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFE 245 (391)
Q Consensus 188 ~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE 245 (391)
-+..+.+|-|+=.+.-.---+||-+|--+ .+....-+.--+.-|-+|+.+.+.+.
T Consensus 153 -L~~vA~vF~p~~~~~GWWY~KFCVlTYm~--ri~~~~vp~el~~RL~~aV~K~i~~~ 207 (324)
T PF07138_consen 153 -LEHVADVFNPTIDVVGWWYNKFCVLTYMH--RIICGSVPAELLTRLQNAVNKFIKPN 207 (324)
T ss_pred -HHHHHHhcCCCCCcccchhhhHHHHHHHH--HHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 23445789887666666778999999744 33322212123467888888888877
No 19
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.60 E-value=2.3e+02 Score=32.59 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 016342 36 TTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD 111 (391)
Q Consensus 36 T~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~D 111 (391)
+..|..|+.|.-|-..-+.++.++.++||-.++.+|.-+-++++ .+...|.-+..|+.++....+.|-+.+.+.
T Consensus 130 K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~ln--g~L~~VEgLs~l~~ele~~~~~L~~~L~eE 203 (982)
T KOG3691|consen 130 KKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLN--GPLDGVEGLSDLRSELEGLLSHLEDILIEE 203 (982)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888888899999999999999998888775 337777777888877776666555544443
No 20
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.36 E-value=1.7e+02 Score=28.13 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHH
Q 016342 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRL 45 (391)
Q Consensus 2 ~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL 45 (391)
..|.+||.|+..-|.+..+|...+..++.--+.|+..-+...-|
T Consensus 1 e~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 1 EKIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEEL 44 (230)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999888888777665554
No 21
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.63 E-value=60 Score=34.86 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchhhhhhHh
Q 016342 50 SAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQ 129 (391)
Q Consensus 50 ~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~ 129 (391)
.-=..|+...+.+.|+++..-.......+ +.|++.|........-+.|...+..|....+.+-..|. ..
T Consensus 147 dLP~rLrkc~~~~aYG~avR~~~~A~~~L---~qY~~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga--------~~ 215 (636)
T KOG2346|consen 147 DLPRRLRKCGRAPAYGAAVRGSSEATGKL---RQYDGRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGA--------QA 215 (636)
T ss_pred hhHHHHHHhccccccchhhccccccccch---hhcCCCCcHHHhccchHHHHHHHHHHHHHHhccCCCCc--------hh
Confidence 33334555556677777766555444433 78999999999887777788777777776555433221 12
Q ss_pred HhhhhHHHHhcChh
Q 016342 130 LSDACLVVDALEPS 143 (391)
Q Consensus 130 L~~aC~vvD~L~~~ 143 (391)
-++|-..++.||.+
T Consensus 216 raEAv~LLl~lg~p 229 (636)
T KOG2346|consen 216 RAEAVVLLLQLGVP 229 (636)
T ss_pred HHHHHHHHHhcCCC
Confidence 33566666677654
No 22
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=43.01 E-value=1.6e+02 Score=27.46 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHhhcCHHHHHHHHHHHHHHHhhc-ccCC
Q 016342 35 ITTTITALHRLTMLVSAV-----EQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYR 85 (391)
Q Consensus 35 LT~SIT~LkrL~MLv~a~-----~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~Yk 85 (391)
++.+|++.++|++++.+. ++|..+.+.....-.+....-+.++.+-| +.|.
T Consensus 3 Vs~A~~~~~~L~~~l~~~~~~PS~~L~~~~~~c~~~p~~~i~~rv~~l~~~~~~~~~ 59 (194)
T PF01858_consen 3 VSSAMQSVSWLQALLSGLSDEPSEELLRIFKSCSRDPTESILKRVKQLLEKFCQKYT 59 (194)
T ss_dssp HHHHHHHHHHHHHHHHHS-SS--HHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999975 78888887666555666677777776555 4443
No 23
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=41.83 E-value=3.8e+02 Score=27.85 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhh----HHHHHHHHHHHHH
Q 016342 5 REIKNKAEQSETMVQEICRDIKKLDFAKKH----ITTTITALHRLTM 47 (391)
Q Consensus 5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkN----LT~SIT~LkrL~M 47 (391)
+-+..-|.+-+.+|++|...+......=.+ |......+..++-
T Consensus 244 ~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~ 290 (412)
T PF04108_consen 244 EVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYN 290 (412)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888887777776666555 5555555555433
No 24
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=40.82 E-value=5.8e+02 Score=28.84 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHHHHHHhcC-C---c-ccccccchhhhHHHHHHhhhhhhhhc-CcCC--------CCccccHHHHHHHHH
Q 016342 147 ELVNNFCRRELTSYEQIFE-G---A-ELAKLDKTERRYAWIKRRIRTNEEIF-KIFP--------PSWHVPYLLNIQFCK 212 (391)
Q Consensus 147 ~li~wf~~~~L~eY~~iF~-~---~-E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP--------~~W~v~~~L~~~Fc~ 212 (391)
.=+-|++.-.+.+|..-|+ . + ...||++.+==|+++-+.++++-+.. ..|- .+-..-+.....-|.
T Consensus 262 ~~~lw~~q~L~~P~~~rF~YHF~~~rqTn~lsKPEwff~~vlk~~ren~~~~d~~~qp~~D~agl~~~~~r~efi~~lvq 341 (737)
T KOG2218|consen 262 EPVLWATQVLLTPYAKRFRYHFMSDRQTNRLSKPEWFFEFVLKVLRENRESFDELFQPLVDKAGLLSVNARLEFINGLVQ 341 (737)
T ss_pred CchhHHHHHHHHHHHhhhheeeccccccccccCcHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCHHHHHHHHHHH
Confidence 3377999999999999996 3 2 56899999988888888888874432 3333 333333334444455
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHhC
Q 016342 213 KTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFG 253 (391)
Q Consensus 213 ~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~ 253 (391)
.-++=+...+... .-+-.+++.-+..|+.|++.|..-|+
T Consensus 342 l~kekl~~~I~q~--d~k~~l~~HLvdq~l~Fdkrl~s~f~ 380 (737)
T KOG2218|consen 342 LAKEKLAVDISQL--DQKRNLFLHLVDQVLAFDKRLQSSFG 380 (737)
T ss_pred HHHHHhhhhhhhH--HhhhhhhHHHHHHHHHHHHHHHHHcC
Confidence 4444444444321 22245678889999999999999987
No 25
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.55 E-value=3.8e+02 Score=25.70 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.7
Q ss_pred HHHHHhHHHHHHHH
Q 016342 9 NKAEQSETMVQEIC 22 (391)
Q Consensus 9 ~kA~~SE~~V~eit 22 (391)
.-|...++++..|.
T Consensus 71 ~~a~~H~~l~~~L~ 84 (261)
T cd07648 71 KLSELHLQLVQKLQ 84 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555444
No 26
>PTZ00464 SNF-7-like protein; Provisional
Probab=35.83 E-value=3.9e+02 Score=25.38 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=53.1
Q ss_pred HHHHHHhHHHHHHHHHhhhhHhh----hhhhH------------HHHHHHHHHHHHHHHHHHHHHHHH-------h----
Q 016342 8 KNKAEQSETMVQEICRDIKKLDF----AKKHI------------TTTITALHRLTMLVSAVEQLQVMA-------S---- 60 (391)
Q Consensus 8 k~kA~~SE~~V~eit~dIk~LD~----AKkNL------------T~SIT~LkrL~MLv~a~~qL~~~~-------~---- 60 (391)
++.+..-+.-+..+-+-|++||. ||+.+ ...+.+|||=.|+-.-++++.... .
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666663 55443 356778887666655444433322 2
Q ss_pred hcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHH
Q 016342 61 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQ 102 (391)
Q Consensus 61 ~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~ 102 (391)
.+.-.++...|..-...+..-....+|+.|..|.+.+.....
T Consensus 97 a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 233356666666555555333334489999888877655543
No 27
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=35.19 E-value=2.5e+02 Score=23.38 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=52.0
Q ss_pred HHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Q 016342 20 EICRDIKKLDFAKKHITTTITALHRLTMLVSA-VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFK 98 (391)
Q Consensus 20 eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a-~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~ 98 (391)
+--.+..++....+|+...+.+|..||-++.- =+.+.+..=.+.|+ ..|..+.+.+.-|..-++...+.+..+-+.
T Consensus 15 ~~Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg---~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~ 91 (100)
T PF08771_consen 15 EALEEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFG---RDLQEAREWLKRYERTGDETDLNQAWDIYY 91 (100)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCHhhHHHHHHHHH
Confidence 33445677778888999999999998766554 55555555555565 344455555555555566666677777766
Q ss_pred HHHHHHHH
Q 016342 99 NIKQILKS 106 (391)
Q Consensus 99 ~i~~~L~~ 106 (391)
.+.+.+.+
T Consensus 92 ~v~~~i~~ 99 (100)
T PF08771_consen 92 QVYRRIKK 99 (100)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 66665544
No 28
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=34.63 E-value=1.6e+02 Score=23.20 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHH
Q 016342 46 TMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILK 105 (391)
Q Consensus 46 ~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i~~~L~ 105 (391)
|.|-++++.+..++... ..+++..+....+++.+.- .+-.....|.++++.+++.+.
T Consensus 12 HFl~NtLn~I~~l~~~~-~~~~~~~i~~ls~~lRy~l--~~~~~~v~l~~El~~i~~Yl~ 68 (82)
T PF06580_consen 12 HFLFNTLNSISWLARID-PEKASEMILSLSDLLRYSL--SSKEEFVTLEEELEFIENYLE 68 (82)
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHh--CCCCCeeeHHHHHHHHHHHHH
Confidence 78899999999999998 8899998888888886655 667777788899988888665
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.12 E-value=5.2e+02 Score=30.85 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=39.5
Q ss_pred HhHhhhhHHHHhcChhHHHHHHHHHHHH--hHHHHHHhcCCcccccccchhhhHHHHHHhhhh
Q 016342 128 QQLSDACLVVDALEPSVREELVNNFCRR--ELTSYEQIFEGAELAKLDKTERRYAWIKRRIRT 188 (391)
Q Consensus 128 ~~L~~aC~vvD~L~~~~k~~li~wf~~~--~L~eY~~iF~~~E~~~Ldni~RRy~Wfkr~L~~ 188 (391)
..+..-|..+|.+.|.++..+++-+-+. .|..| -+.|++++||..=+-+.|+.
T Consensus 963 ~~~~~l~~~~~~~~~~~~~~l~e~~~~~~~~i~~f--------~~~l~~~~r~I~~~s~~l~~ 1017 (1201)
T PF12128_consen 963 QWAPDLQELLDVLIPQQQQALIEQGRNIGNDISNF--------YGVLEDFDRRIKSQSRRLSR 1017 (1201)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHH
Confidence 3466889999999888888888775533 22233 34678999999999888877
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.45 E-value=3.6e+02 Score=23.35 Aligned_cols=91 Identities=14% Similarity=0.320 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhhhhHhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHhh
Q 016342 14 SETMVQEICRDIKKLDFAKKHITTTITALHR--------LTMLVSAVEQLQVMAS-----KRQYKEAAAQLEAVNQLCSH 80 (391)
Q Consensus 14 SE~~V~eit~dIk~LD~AKkNLT~SIT~Lkr--------L~MLv~a~~qL~~~~~-----~r~Y~e~a~lL~av~~L~~~ 80 (391)
+=++|..|..-|++++.=...|..-+..|.+ |--|..-.+.++.... ++++.+.-.-+.++.+++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell-- 91 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL-- 91 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4456777777777777766666666555543 2222333333322221 244445444555555544
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016342 81 FEAYRDIPKITELREKFKNIKQILKSHVF 109 (391)
Q Consensus 81 F~~Yksi~~I~~L~~~~~~i~~~L~~qI~ 109 (391)
=.-..++.+|...+..++..++.||-
T Consensus 92 ---GEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 92 ---GEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12367788888888888888888774
No 31
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.14 E-value=5.1e+02 Score=24.32 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016342 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61 (391)
Q Consensus 3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~ 61 (391)
.|.++-.-.++-|.-+..+.+.++.+=-|=+++..+ ..-+++|+..+...+..
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a------~~~F~~~l~d~~~~~~g 55 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATT------NKLFVSGIRDLSQQCKK 55 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCC
Confidence 456666666677777777777777776666666664 55677777777776653
No 32
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=27.57 E-value=3.7e+02 Score=24.04 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHH
Q 016342 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTI 39 (391)
Q Consensus 5 ~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SI 39 (391)
.+||.-|.+|.....+|..=|..+...=..+..+|
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~ 116 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQISQVVESM 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Confidence 57899999999988888887777665533333333
No 33
>PRK12803 flagellin; Provisional
Probab=27.43 E-value=3.4e+02 Score=27.64 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc-ccCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~Yksi~~I~~L~~ 95 (391)
.+..|..+|..|+.+++|+...+..|+.- -+++. ++.+.|+-+.+|.-.= ..=.+-..-..+..
T Consensus 48 ia~~l~s~i~~l~q~~~Ni~~a~s~lqta---e~aL~------------~i~~~LqrirELavqA~Ngt~s~~dR~ai~~ 112 (335)
T PRK12803 48 VAGKINAQIRGLSQASRNTSKAINFIQTT---EGNLN------------EVEKVLVRMKELAVQSGNGTYSDADRGSIQI 112 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45678899999999999999998877652 22222 2334444555554211 12223355667777
Q ss_pred HHHHHHHHHHHHHH-hhccc
Q 016342 96 KFKNIKQILKSHVF-SDFSS 114 (391)
Q Consensus 96 ~~~~i~~~L~~qI~-~DF~~ 114 (391)
+++.++..+..-.- .+|..
T Consensus 113 Ei~qL~~~i~~ian~t~fnG 132 (335)
T PRK12803 113 EIEQLTDEINRIADQAQYNQ 132 (335)
T ss_pred HHHHHHHHHHHHHHhCCcCC
Confidence 77777777776333 36663
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.96 E-value=7.7e+02 Score=26.05 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHH
Q 016342 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRL-TMLVSAVEQLQVMASK--RQYKEAAAQLEAVNQ 76 (391)
Q Consensus 2 ~~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~SIT~LkrL-~MLv~a~~qL~~~~~~--r~Y~e~a~lL~av~~ 76 (391)
++|.+++++..+.|.+++++..+|.+++.+ |..|-..|+.+ +++-.+-.+|+.+-.. .+-.-.|-.|.+...
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~q---l~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQ---LIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999987 55555556555 3444444444444433 244444555555443
No 35
>PRK12807 flagellin; Provisional
Probab=26.44 E-value=3.7e+02 Score=26.31 Aligned_cols=83 Identities=10% Similarity=0.201 Sum_probs=50.4
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc-ccCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~Yksi~~I~~L~~ 95 (391)
.+..+..+|..|+.+++|+...+..|+.= -++++ ++.+.|+-+++|...- .+=-+-..-+.+..
T Consensus 48 ~~~~l~~~~~~~~q~~~N~~~~~s~l~~a---d~~L~------------~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ 112 (287)
T PRK12807 48 IATRMRARQSGLEKASQNTQDGMSLIRTA---ESAMN------------SVSNILTRMRDIAVQSSNGTNTAENQSALQK 112 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 45688999999999999999999777652 22222 2333444555555322 12223355666777
Q ss_pred HHHHHHHHHHHHH-Hhhccc
Q 016342 96 KFKNIKQILKSHV-FSDFSS 114 (391)
Q Consensus 96 ~~~~i~~~L~~qI-~~DF~~ 114 (391)
++..+...+..-. -.+|+.
T Consensus 113 Ei~~l~~~i~~~a~~t~~nG 132 (287)
T PRK12807 113 EFAELQEQIDYIAKNTEFND 132 (287)
T ss_pred HHHHHHHHHHHHHHhCCcCC
Confidence 7777777766643 245653
No 36
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=25.90 E-value=8e+02 Score=25.88 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=11.2
Q ss_pred HHHHHHHhhcccCCCchHHH
Q 016342 72 EAVNQLCSHFEAYRDIPKIT 91 (391)
Q Consensus 72 ~av~~L~~~F~~Yksi~~I~ 91 (391)
..+-.++.-|++...-|.|.
T Consensus 329 ~~~~~ll~~f~~L~~Rp~I~ 348 (579)
T PF08385_consen 329 EEAFRLLQKFKSLLNRPRIR 348 (579)
T ss_pred HHHHHHHHHHHhHhcchHHH
Confidence 44445555666666666663
No 37
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=25.01 E-value=3.6e+02 Score=27.32 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcc-cCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE-AYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~-~Yksi~~I~~L~~ 95 (391)
....|..+|+.|+.+++|+...|..|+- =-+|+ .++...|+.+++++---. .=.+=+.-..+.+
T Consensus 48 is~~l~~~~~~L~q~~~n~~~g~s~lqt---ae~aL------------~~~~~~lqrirelavqaan~t~s~~dr~~iq~ 112 (360)
T COG1344 48 IALRLRSQIRGLSQAKDNAQDGISKLQT---AEGAL------------SEISKILQRIKELAVQAANGTLSDADRAAIQK 112 (360)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3467889999999999999999876653 11222 234445555666653222 2123334455556
Q ss_pred HHHHHHHHHHH
Q 016342 96 KFKNIKQILKS 106 (391)
Q Consensus 96 ~~~~i~~~L~~ 106 (391)
++..++..|..
T Consensus 113 Ei~~l~~el~~ 123 (360)
T COG1344 113 EIEQLLDELDN 123 (360)
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 38
>PRK08026 flagellin; Validated
Probab=24.03 E-value=3.7e+02 Score=29.23 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh-cccCCCchHHHHHH
Q 016342 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELR 94 (391)
Q Consensus 16 ~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~Yksi~~I~~L~ 94 (391)
.....|..+|+.|+.+.+|+...+..|+. --++++ ++.++|+.+.+|... =..=-+-.....+.
T Consensus 49 aia~~l~sqi~~l~qa~rN~~dg~s~lqt---AE~aL~------------~i~d~LqRmrELaVqAaNGT~S~~DR~aiq 113 (529)
T PRK08026 49 AIANRFTSNIKGLTQAARNANDGISVAQT---TEGALS------------EINNNLQRVRELTVQAATGTNSQSDLDSIQ 113 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 35678999999999999999999887654 222222 344455566666531 11222335566666
Q ss_pred HHHHHHHHHHHH
Q 016342 95 EKFKNIKQILKS 106 (391)
Q Consensus 95 ~~~~~i~~~L~~ 106 (391)
.++.++...+..
T Consensus 114 ~Ei~qL~~eI~~ 125 (529)
T PRK08026 114 DEIKSRLDEIDR 125 (529)
T ss_pred HHHHHHHHHHHH
Confidence 777766666655
No 39
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=6.7e+02 Score=23.92 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHH
Q 016342 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNI 100 (391)
Q Consensus 63 ~Y~e~a~lL~av~~L~~~F~~Yksi~~I~~L~~~~~~i 100 (391)
.-..++....++..++..-..-.+.|+|+.+..+++.-
T Consensus 94 ss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQ 131 (224)
T KOG3230|consen 94 SSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQ 131 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 34567778888888888888899999999998777543
No 40
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.17 E-value=3.1e+02 Score=30.99 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHhhhhHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 016342 13 QSETMVQEICRDIKKLDF--AKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLE 72 (391)
Q Consensus 13 ~SE~~V~eit~dIk~LD~--AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~ 72 (391)
=|+++|..|+.+|-.|-. -+.+.|.|||-+ +++|+.+-..-|..++. .|.-.+..|.
T Consensus 330 LSdaNi~~I~~~i~~Ly~~~sr~~v~~sLtk~-l~~~~~~~~~~ld~~~~--~y~AL~~~l~ 388 (822)
T KOG2141|consen 330 LSDANIIKIIAGIAELYMNNSRYDVTSSLTKL-LLKALLGPFRLLDSLLT--TYAALAAMLH 388 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHHHhhhhHHHHHHHHH--HHHHHHHHHH
Confidence 378899999999999977 889999999854 23444333333333332 3444444443
No 41
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=21.92 E-value=9.1e+02 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHhhhhHhhhhhhHHHHHH
Q 016342 13 QSETMVQEICRDIKKLDFAKKHITTTIT 40 (391)
Q Consensus 13 ~SE~~V~eit~dIk~LD~AKkNLT~SIT 40 (391)
.-+.|+.-+.+|-..|+..=+=|...+.
T Consensus 238 e~~e~l~Vl~~Da~El~~V~~el~~~~~ 265 (412)
T PF04108_consen 238 ERQEMLEVLENDAQELPDVVKELQERLD 265 (412)
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 4466888888888888776555554443
No 42
>PRK12808 flagellin; Provisional
Probab=21.89 E-value=4.8e+02 Score=27.98 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHR 44 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~Lkr 44 (391)
....|..+|..|+.+.+|+...+..|+.
T Consensus 48 IA~rLrsqiagL~Qa~rNi~dgiS~LQT 75 (476)
T PRK12808 48 IATRMRARESGLGVAANNTQDGMSLIRT 75 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999987663
No 43
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.64 E-value=1.1e+03 Score=25.73 Aligned_cols=91 Identities=15% Similarity=0.349 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhHhhhh--hhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHhhcccCC-CchH
Q 016342 15 ETMVQEICRDIKKLDFAK--KHITTTITALHR-LTMLVSAVEQLQVMASKRQYKEA-AAQLEAVNQLCSHFEAYR-DIPK 89 (391)
Q Consensus 15 E~~V~eit~dIk~LD~AK--kNLT~SIT~Lkr-L~MLv~a~~qL~~~~~~r~Y~e~-a~lL~av~~L~~~F~~Yk-si~~ 89 (391)
++-+.+|...|.+|...+ .|+..++..+.+ +..+-..+.+++.++....-... +++=+++.++....+.|. +.|.
T Consensus 419 ~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~s~~ 498 (547)
T PRK10807 419 QQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPGSPA 498 (547)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Confidence 445555666666653221 233333333332 22333333444444444333222 222233444444445553 5666
Q ss_pred HHHHHHHHHHHHHHHH
Q 016342 90 ITELREKFKNIKQILK 105 (391)
Q Consensus 90 I~~L~~~~~~i~~~L~ 105 (391)
..+|.+.+.++.+.++
T Consensus 499 ~~~l~~tl~~l~~~~r 514 (547)
T PRK10807 499 YNKMVADMQRLDQVLR 514 (547)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666555555433
No 44
>PRK13589 flagellin; Provisional
Probab=21.53 E-value=4.6e+02 Score=28.77 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh-cccCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~Yksi~~I~~L~~ 95 (391)
....|..+|+.|++|.+|....+..|+. --.+++ ++.+.|+-+++|... =..=.+-..-..+..
T Consensus 50 IA~rLrsQi~gL~Qa~rNandgiS~LQT---AEgAL~------------ei~diLQRmRELAVQAANGT~S~~DR~AIq~ 114 (576)
T PRK13589 50 IADSLRSQAATLGQAINNGNDAIGILQT---ADKAMD------------EQLKILDTIKTKATQAAQDGQSLKTRTMLQA 114 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567899999999999999988887553 222222 233444555554421 112223344555666
Q ss_pred HHHHHHHHHHH
Q 016342 96 KFKNIKQILKS 106 (391)
Q Consensus 96 ~~~~i~~~L~~ 106 (391)
++..++..|..
T Consensus 115 El~qL~eeI~~ 125 (576)
T PRK13589 115 DINRLMEELDN 125 (576)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 45
>PRK13588 flagellin B; Provisional
Probab=21.22 E-value=4.6e+02 Score=28.40 Aligned_cols=82 Identities=10% Similarity=0.167 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh-cccCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~Yksi~~I~~L~~ 95 (391)
....|...|+.|++|.+|....|..|+. --+++++ +.++|+-+++|... =..=.+-..-..+..
T Consensus 50 ia~~l~sqi~~l~Qa~~N~~dgis~lqt---ae~aL~~------------i~~iLqrireLavqAaNgt~s~~dR~aiq~ 114 (514)
T PRK13588 50 IADSLRSQSANLGQAIRNANDAIGMVQT---ADKAMDE------------QIKILDTIKTKAVQAAQDGQTLESRRALQS 114 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 5568899999999999999999887543 2233322 33455555555522 122223345566667
Q ss_pred HHHHHHHHHHHHHHh-hcc
Q 016342 96 KFKNIKQILKSHVFS-DFS 113 (391)
Q Consensus 96 ~~~~i~~~L~~qI~~-DF~ 113 (391)
++..++..+..-.-. +|+
T Consensus 115 Ei~qL~~eI~~iantt~fn 133 (514)
T PRK13588 115 DIQRLLEELDNIANTTSFN 133 (514)
T ss_pred HHHHHHHHHHHHHhcCCcC
Confidence 777777666653222 465
No 46
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=20.98 E-value=1.2e+03 Score=26.23 Aligned_cols=52 Identities=19% Similarity=0.502 Sum_probs=43.6
Q ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHH
Q 016342 314 NFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVS 369 (391)
Q Consensus 314 ~F~g~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF 369 (391)
.|+..|-.-|.|-.--||+.-+.++.+.|.+-...++|++-.++. ..|-|||
T Consensus 885 kfhkhlq~~f~plvvryvdlmessiaqsihrgfe~e~wepvkngs----atsedlf 936 (1218)
T KOG3543|consen 885 KFHKHLQQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWEPVKNGS----ATSEDLF 936 (1218)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhhccccccCCC----cchHhHH
Confidence 588899999999999999999999999999999999997643332 2467888
No 47
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=20.52 E-value=3.1e+02 Score=25.93 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=41.4
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 016342 24 DIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQ 70 (391)
Q Consensus 24 dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~l 70 (391)
-|.+|..++.-|...+-++++|+.+..-+..++..+.+..+.+-+.-
T Consensus 189 yl~hL~~~~e~l~~~Ll~~HNl~~~~~~~~~iR~~I~~~~~~~~~~~ 235 (238)
T PF01702_consen 189 YLHHLLKAKEMLGPVLLSIHNLHHYLRFFKEIREAIRNGTLREFVEE 235 (238)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57889999999999999999999999999999999999888876543
No 48
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=20.51 E-value=4.8e+02 Score=25.21 Aligned_cols=179 Identities=19% Similarity=0.233 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--hhcccC-CCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchh
Q 016342 47 MLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC--SHFEAY-RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEE 123 (391)
Q Consensus 47 MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~--~~F~~Y-ksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~ 123 (391)
-|-..-+++=.++++.+|.|+-..|.-+.+-+ ..|++. .+++.|+.|...+.+.+..+..- +.+.
T Consensus 4 eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~-----------~~~~- 71 (232)
T PF09577_consen 4 ELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSV-----------SMSE- 71 (232)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHcc-----------CCCH-
Confidence 35556677788899999999999998887766 355555 78999999999998888876540 0011
Q ss_pred hhhhHhHhhhhHHHHhcChhHHHHHHHHHHHHh---HHHHHHhcCCcccccccchhhhHHHHHHhhhhhhhhc-CcCCCC
Q 016342 124 TNLLQQLSDACLVVDALEPSVREELVNNFCRRE---LTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPS 199 (391)
Q Consensus 124 ~~~~~~L~~aC~vvD~L~~~~k~~li~wf~~~~---L~eY~~iF~~~E~~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~ 199 (391)
......-.--=++||+|-.+. +-|=.-+.... +...++..... ++ .=|+..++.|-++| .|.|+
T Consensus 72 ~e~~~~at~~RLavDAl~~~~-qPLW~~~e~~i~~~~~~mk~a~~~~-----~~-----~~f~~~~n~f~~~y~~I~Ps- 139 (232)
T PF09577_consen 72 EEKIRAATQFRLAVDALTHKH-QPLWLQYEKPIMEDFQRMKQAAQKG-----DK-----EAFRASLNEFLSHYELIRPS- 139 (232)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHHHHhC-----CH-----HHHHHHHHHHHHHHHHhcch-
Confidence 111112223347888876432 11111122222 22223333211 11 33778888888888 56665
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhHHHHHHHHHHhCCC
Q 016342 200 WHVPYLLNIQFCKKTRKQLEGILDNL-TERPDVGTLLLALQRTIEFEDELAEKFGGD 255 (391)
Q Consensus 200 W~v~~~L~~~Fc~~Tr~dL~~iL~~~-~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~ 255 (391)
+.|... ..=...-..+++. |... ....+-+....+| -..|..|..-|.+.
T Consensus 140 l~I~~~--~~~v~~v~s~i~y-l~~~~~~~~~~~~~~~~l---~~le~~l~~lF~~~ 190 (232)
T PF09577_consen 140 LTIDRP--PEQVQRVDSHISY-LERLRFQQLDQKEVQEAL---EQLEEDLQKLFDGV 190 (232)
T ss_pred hhccCC--HHHHHHHHHHHHH-HHHhhhcccChHHHHHHH---HHHHHHHHHHhCcc
Confidence 333221 1111112222222 2221 2344556666665 45699999999876
No 49
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=20.36 E-value=7.9e+02 Score=28.27 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh
Q 016342 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTT--ITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS 79 (391)
Q Consensus 3 ~I~~Ik~kA~~SE~~V~eit~dIk~LD~AKkNLT~S--IT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~ 79 (391)
.+.+.++-++....-+++.-+||+.|=.|-=+.+.+ -+-|++.+|++.+ -+........|..+...++++.++.+
T Consensus 187 s~~~m~~~~~dl~t~lrdv~~~l~~lli~dy~~~e~qv~~qLn~i~~~i~~--~l~~~s~s~vi~~l~~v~~~~~el~~ 263 (865)
T KOG4331|consen 187 SLEDMRRLATDLRTYLRDVPRDLMVLLIADYTHSECQVFYQLNEIGMLIGG--CLHDDSESNVIPVLDYVLSAAQELRE 263 (865)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccchhHHHHHhhcccchhcc--hhhhccccchHHHHHHHHHHHHHHHH
Confidence 355667777777778888888888776666655443 3344555555443 45556666778888887777766653
No 50
>PRK12806 flagellin; Provisional
Probab=20.22 E-value=5e+02 Score=27.74 Aligned_cols=82 Identities=13% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh-hcccCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS-HFEAYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~-~F~~Yksi~~I~~L~~ 95 (391)
....|...|+.|+.+.+|+...|..|+. --++++ ++.+.|+-+++|.- .=..=.+-..-..+..
T Consensus 50 ia~~l~sqi~~l~qa~~N~~dgis~lqt---ae~aL~------------~i~~iLqr~reLavqaaNgt~s~~dR~ai~~ 114 (475)
T PRK12806 50 ISQRMTAQIRGMNQAVRNANDGISLAQV---AEGAMQ------------ETTNILQRMRELSVQAANSTNNSSDRASIQS 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4456899999999999999998887654 111111 23344444444442 1122222344456666
Q ss_pred HHHHHHHHHHHHH-Hhhcc
Q 016342 96 KFKNIKQILKSHV-FSDFS 113 (391)
Q Consensus 96 ~~~~i~~~L~~qI-~~DF~ 113 (391)
++..++..+..-. -.+|.
T Consensus 115 Ei~~L~~~i~~ian~t~fn 133 (475)
T PRK12806 115 EISQLKSELERIAQNTEFN 133 (475)
T ss_pred HHHHHHHHHHHHHhhCCcC
Confidence 7777766666533 23554
Done!