Query 016342
Match_columns 391
No_of_seqs 125 out of 196
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 93.2 5.3 0.00018 37.0 19.3 187 43-244 13-208 (235)
2 3swh_A MUNC13-1, protein UNC-1 73.9 3.9 0.00013 40.1 5.6 64 321-384 9-74 (341)
3 3fhn_A Protein transport prote 42.8 3.4E+02 0.012 29.0 25.8 275 28-376 80-405 (706)
4 2fji_1 Exocyst complex compone 37.5 35 0.0012 33.5 5.1 46 324-369 10-63 (399)
5 4aj5_K Spindle and kinetochore 33.2 66 0.0023 26.9 5.3 49 2-50 50-99 (123)
6 3k8w_A Flagellin homolog; flag 29.8 2E+02 0.0069 27.9 8.9 84 16-114 29-114 (326)
7 1wlx_A Alpha-actinin 4; three- 28.8 1.7E+02 0.0057 24.6 7.2 74 28-102 28-112 (129)
8 3v47_C Flagellin; innate immun 27.8 99 0.0034 31.1 6.5 83 16-113 8-92 (425)
9 1io1_A Phase 1 flagellin; beta 25.2 1.5E+02 0.0051 29.3 7.3 71 21-106 1-72 (398)
10 3pwx_A Putative flagellar HOOK 25.2 1.4E+02 0.0047 27.2 6.6 87 17-119 12-103 (239)
11 4gkw_A Spindle assembly abnorm 22.6 2.9E+02 0.0099 23.4 7.4 49 8-56 85-146 (167)
12 2d4x_A Flagellar HOOK-associat 20.2 1.6E+02 0.0054 26.6 5.9 88 17-119 10-101 (248)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=93.19 E-value=5.3 Score=37.01 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcccC---CCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 016342 43 HRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGK 119 (391)
Q Consensus 43 krL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksi~~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~ 119 (391)
+++.=+.+..|.|...+..|+|.+++.++.....++...++= .+.+.+..+..+++.-+..|.+++..+... ...
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~ 90 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNE 90 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSS
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 345667778899999999999999999999999999665531 235556778888888888898888877644 111
Q ss_pred CchhhhhhHhHhhhhHHHHhcCh--hHHHHHHHHHHHHhHHHHHHh-cCCcccccccchhhhHHHHHHhhhhhhhhcCcC
Q 016342 120 ETEETNLLQQLSDACLVVDALEP--SVREELVNNFCRRELTSYEQI-FEGAELAKLDKTERRYAWIKRRIRTNEEIFKIF 196 (391)
Q Consensus 120 ~~~~~~~~~~L~~aC~vvD~L~~--~~k~~li~wf~~~~L~eY~~i-F~~~E~~~Ldni~RRy~Wfkr~L~~~e~~~~iF 196 (391)
...++.+...+--||. .+++-+++..-+..=+.-+++ |.++-..-+-++. +.+|.-+-+..++.-.+|
T Consensus 91 -------~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls--~i~Fs~I~~t~~~f~~~F 161 (235)
T 2d2s_A 91 -------IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLA--VIRFQTIKKTVEDFQDIF 161 (235)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 2457777788777885 455666666555555555555 3333344445555 455655555555544699
Q ss_pred CCCccccHHHHHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHhHHH
Q 016342 197 PPSWHVPYLLNIQFCKKTRKQL---EGILDNLTERPDVGTLLLALQRTIEF 244 (391)
Q Consensus 197 P~~W~v~~~L~~~Fc~~Tr~dL---~~iL~~~~~~~dv~~Ll~aLq~T~~F 244 (391)
|.+ .-..+..|...-+.++ ..++.+.--. +..+.-++++.+...
T Consensus 162 ~~~---~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~ 208 (235)
T 2d2s_A 162 KEL---GAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQ 208 (235)
T ss_dssp TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred CCC---CcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHH
Confidence 986 2344444555545444 4444422111 333334777766655
No 2
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=73.92 E-value=3.9 Score=40.09 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=51.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcccccc-cc-CCCCccccChHHHHHHHHHHHHHHHHhcc
Q 016342 321 SCFEPHLTAYVELEERTLMENLEKLVQEETWDI-EE-GSQNNVLHSSTEVSIRTYIMILIILHVMC 384 (391)
Q Consensus 321 ~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~-~~-~~~~~Vl~Ss~dLF~~~~~~~~~~~~~~~ 384 (391)
.-|+||+.-|++.-+....+-+.+.+...+|.+ +. .....--.|..|+|.-++.++.++.++.|
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~W 74 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLEC 74 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999998766643 21 23345567788999999999998888765
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=42.75 E-value=3.4e+02 Score=29.02 Aligned_cols=275 Identities=13% Similarity=0.125 Sum_probs=146.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHhhcccCCCch-HH---H----HHHH
Q 016342 28 LDFAKKHITTTITALHRLTMLVSAVEQLQVMAS----KRQYKEAAAQLEAVNQLCSHFEAYRDIP-KI---T----ELRE 95 (391)
Q Consensus 28 LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~----~r~Y~e~a~lL~av~~L~~~F~~Yksi~-~I---~----~L~~ 95 (391)
|+..+.++..-.+.-+.+.-|-.-=++|.+++. .=.|.++..+-+-++.+.....+-.+++ .+ . .+..
T Consensus 80 l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (706)
T 3fhn_A 80 LNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTG 159 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHTTSCCCCCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcccccchhhhhhhhhcchHHHHH
Confidence 334444444444443333333222233333332 3356666666665555532222222122 11 1 2333
Q ss_pred HHHH-HHHHHHHHHHhhcccc-----CCCCC--chhhhhhHhHhhhhH----HHHhcChhHH-----------------H
Q 016342 96 KFKN-IKQILKSHVFSDFSSL-----GTGKE--TEETNLLQQLSDACL----VVDALEPSVR-----------------E 146 (391)
Q Consensus 96 ~~~~-i~~~L~~qI~~DF~~~-----~~~~~--~~~~~~~~~L~~aC~----vvD~L~~~~k-----------------~ 146 (391)
++.. +...++..+.++|+.. ++... +.+......+..++. +.|.--|+.. .
T Consensus 160 ~~~~~l~~~~~~~ls~~l~~~L~~~kWp~~~~~~~~~~~~~~~~~~~~~l~kL~~Lq~p~~~~~~~~~~~~~~~~~~~~~ 239 (706)
T 3fhn_A 160 KYNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERPLSRSNNNQ 239 (706)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTTTSTTCCGGGSHHHHHHHHHHHHHHHHHTTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCC
Confidence 3333 4455555566666542 33221 111123456788887 7777666521 1
Q ss_pred HHHHHHHHHhHHHHHHhcC-C--cccccccchhhhHHHHHHhhhhhhhh----c-CcCCCC-cc-ccHHHHHHHHHHHHH
Q 016342 147 ELVNNFCRRELTSYEQIFE-G--AELAKLDKTERRYAWIKRRIRTNEEI----F-KIFPPS-WH-VPYLLNIQFCKKTRK 216 (391)
Q Consensus 147 ~li~wf~~~~L~eY~~iF~-~--~E~~~Ldni~RRy~Wfkr~L~~~e~~----~-~iFP~~-W~-v~~~L~~~Fc~~Tr~ 216 (391)
.-+=|=.+-.+.++..-|+ . +.-.+ ++++-=|.|+...|...=.. + ..|+.. |. +...+...--..-|+
T Consensus 240 ~p~llp~~~L~~P~~~RFrYHF~g~k~T-dKpEwyf~Fl~~~lq~~L~~~~~~f~d~~~~~~~~~~~~eFI~~LL~~vre 318 (706)
T 3fhn_A 240 EPVLWNFKSLANNFNVRFTYHFHATSSS-SKIETYFQFLNDYLAENLYKCINIFHDDCNGLTKPVIHEQFINYVLQPIRD 318 (706)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTCSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCBGGGTBCHHHHHHHHHHHHSHHHHH
T ss_pred CccchhHHHHHHHHHHHhhhhcCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHH
Confidence 1134566777888888774 2 22112 66776677777777774322 3 333321 11 112223333344555
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCCCCCCcchhhcCCCCCCCCchhHHHHHHHHHHhhccCCC
Q 016342 217 QLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296 (391)
Q Consensus 217 dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~k~e~~~~~~~~~~ 296 (391)
=+...|.. -|..+|-.-+..++.|++.|..+|+-..
T Consensus 319 Kl~~~l~~----~d~~lLsHlI~Ell~FD~~Lr~~~~Y~~---------------------------------------- 354 (706)
T 3fhn_A 319 KVRSTLFQ----NDLKTLIVLISQILATDKNLLNSFHYHG---------------------------------------- 354 (706)
T ss_dssp HHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTCCCS----------------------------------------
T ss_pred HHHhHhcc----cchHHHHHHHHHHHHHHHHHHHhcCCCC----------------------------------------
Confidence 55555543 5789999999999999999999996430
Q ss_pred cccccCCCCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccccccCCCCccccChHHHHHHHHHHH
Q 016342 297 TEEKDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQEETWDIEEGSQNNVLHSSTEVSIRTYIMI 376 (391)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~F~g~IS~cFEpyL~~yI~~qdk~L~e~l~~~i~e~~~~~~~~~~~~Vl~Ss~dLF~~~~~~~ 376 (391)
.|.++-+=+.+...|++.|.+-=.+.++.+++.+. -+|=||.=|...-..+
T Consensus 355 -------------------~Gl~~li~~~~f~~WL~~Ek~fA~~rf~~Ii~s~d----------~lt~sA~~~~~LLe~I 405 (706)
T 3fhn_A 355 -------------------LGLVSLISDEVWEKWINYEVEMANRQFINITKNPE----------DFPKSSQNFVKLINKI 405 (706)
T ss_dssp -------------------CCGGGGSCHHHHHHHHHHHHHHHHHHHHHTTSSGG----------GGGGHHHHHHHHHHHH
T ss_pred -------------------CcchhcccHHHHHHHHHHHHHHHHHHHHHHHhCCc----------cCCHHHHHHHHHHHHH
Confidence 14444333667789999999999999999986431 2255776665444444
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=37.46 E-value=35 Score=33.48 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=36.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhccc--c-----cccc-CCCCccccChHHHH
Q 016342 324 EPHLTAYVELEERTLMENLEKLVQEET--W-----DIEE-GSQNNVLHSSTEVS 369 (391)
Q Consensus 324 EpyL~~yI~~qdk~L~e~l~~~i~e~~--~-----~~~~-~~~~~Vl~Ss~dLF 369 (391)
+..+..|++...++|.+-+.+++..+. | +++. ..|..+.|+..|+|
T Consensus 10 ~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvf 63 (399)
T 2fji_1 10 ETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCF 63 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHH
Confidence 457889999999999999999998662 2 2222 45678899999999
No 5
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=33.17 E-value=66 Score=26.89 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHhHHHHHHHHHhh-hhHhhhhhhHHHHHHHHHHHHHHHH
Q 016342 2 YKIREIKNKAEQSETMVQEICRDI-KKLDFAKKHITTTITALHRLTMLVS 50 (391)
Q Consensus 2 ~~I~~Ik~kA~~SE~~V~eit~dI-k~LD~AKkNLT~SIT~LkrL~MLv~ 50 (391)
.+|+.||++-..--..++.|...= ...|.+...|..+|+..+|||--++
T Consensus 50 ~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 50 KELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777766555566665555 4578899999999999999998776
No 6
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=29.81 E-value=2e+02 Score=27.85 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc-ccCCCchHHHHHH
Q 016342 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELR 94 (391)
Q Consensus 16 ~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~Yksi~~I~~L~ 94 (391)
.....|..+|+.|+.+++|+...+..|+- --+++ .++.+.|+-+.+|..-= ..=.+-..-..+.
T Consensus 29 aia~~L~sqi~~l~Q~~rN~~da~S~Lqt---AE~AL------------~~i~diLqrmRELaVQAaNgT~s~~DR~aIa 93 (326)
T 3k8w_A 29 AISDRMTAQIKGLTQAQRNANDGISLAQT---AEGAL------------GEISNNLQRIRELAVQASNGTNTQTDRDALQ 93 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35678999999999999999999887663 22222 23445555666665321 1222345567777
Q ss_pred HHHHHHHHHHHHHHH-hhccc
Q 016342 95 EKFKNIKQILKSHVF-SDFSS 114 (391)
Q Consensus 95 ~~~~~i~~~L~~qI~-~DF~~ 114 (391)
.++..++..|....- .+|..
T Consensus 94 ~Ei~qL~~eI~~iANsT~fNG 114 (326)
T 3k8w_A 94 AEVTQLQSEIQRVAEQTSFNG 114 (326)
T ss_dssp HHHHHHHHHHHHHHHHCEETT
T ss_pred HHHHHHHHHHHHHHhhCCcCC
Confidence 888888887777333 36763
No 7
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=28.84 E-value=1.7e+02 Score=24.60 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=50.8
Q ss_pred HhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHhhcc-------cCCCchHHHHHHHH
Q 016342 28 LDFAKKHITTTIT--ALHRLTMLVSAVEQLQVMAS--KRQYKEAAAQLEAVNQLCSHFE-------AYRDIPKITELREK 96 (391)
Q Consensus 28 LD~AKkNLT~SIT--~LkrL~MLv~a~~qL~~~~~--~r~Y~e~a~lL~av~~L~~~F~-------~Yksi~~I~~L~~~ 96 (391)
+|.|.-.|+..+. ++.=.+-|..+.++.+.-+. ...+..++.+-+.+.++...+. ||..|. ...|.++
T Consensus 28 ~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it-~~~l~~~ 106 (129)
T 1wlx_A 28 MESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVT-PQIINSK 106 (129)
T ss_dssp HHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCC-HHHHHHH
T ss_pred HHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccch-HHHHHHH
Confidence 5556666664433 56677788888888887765 5688888888899999988777 898764 3444433
Q ss_pred HHHHHH
Q 016342 97 FKNIKQ 102 (391)
Q Consensus 97 ~~~i~~ 102 (391)
-+.++.
T Consensus 107 W~~l~~ 112 (129)
T 1wlx_A 107 WEKVQQ 112 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 8
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=27.75 E-value=99 Score=31.10 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh-hcccCCCchHHHHHH
Q 016342 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS-HFEAYRDIPKITELR 94 (391)
Q Consensus 16 ~~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~-~F~~Yksi~~I~~L~ 94 (391)
.+...|..+|+.|+++.||+...|..|+- -=+++ .++.++|+-|.+|.. -=..=.+-..-..+.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqt---AEgAL------------~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq 72 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQT---TEGAL------------NEINNNLQRVRELSVQATNGTNSDSDLKSIQ 72 (425)
T ss_dssp ----------------CHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45567899999999999999999987764 11222 233445555555552 111212334556677
Q ss_pred HHHHHHHHHHHHHHH-hhcc
Q 016342 95 EKFKNIKQILKSHVF-SDFS 113 (391)
Q Consensus 95 ~~~~~i~~~L~~qI~-~DF~ 113 (391)
.++.+|+.+|....- .+|+
T Consensus 73 ~Ei~qL~~eI~~Ian~T~fN 92 (425)
T 3v47_C 73 DEIQQRLEEIDRVSNQTQFN 92 (425)
T ss_dssp HHHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHhhCCcC
Confidence 777777777766332 4565
No 9
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=25.19 E-value=1.5e+02 Score=29.26 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh-cccCCCchHHHHHHHHHHH
Q 016342 21 ICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKN 99 (391)
Q Consensus 21 it~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~Yksi~~I~~L~~~~~~ 99 (391)
|..+|+.|+++.+|+...+..|+-= =+++ .++.+.|+-|++|... =..=.+-..-..+..++.+
T Consensus 1 ~~~~i~~l~q~~~N~~~~~s~lqta---e~aL------------~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~ 65 (398)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTT---EGAL------------NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQ 65 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999998877541 1121 2344555566666631 1111233445666677777
Q ss_pred HHHHHHH
Q 016342 100 IKQILKS 106 (391)
Q Consensus 100 i~~~L~~ 106 (391)
++.+|..
T Consensus 66 l~~ei~~ 72 (398)
T 1io1_A 66 RLNEIDR 72 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 10
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=25.16 E-value=1.4e+02 Score=27.23 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc--ccCCCchHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELR 94 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~Yksi~~I~~L~ 94 (391)
....|..+|..|+.+++|+...+..|+- -=+++.+ +.+.|+-+.+|+.-= ..| +-..-..+.
T Consensus 12 ~~~~l~~~i~~l~q~~~N~~~a~s~l~~---ae~aL~~------------i~~~l~r~rel~vqa~ngt~-s~~dr~ai~ 75 (239)
T 3pwx_A 12 KLLNLERENSAIAQYQSNIANLKTTLSS---QETHLDS------------VSESLKSMRDIVLWGANGSL-TDQDRSGMI 75 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHSCSSC-CTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 4567899999999999999999887654 2233332 334455555555221 123 234556777
Q ss_pred HHHHHHHHHHHHHHHh-hccc--cCCCC
Q 016342 95 EKFKNIKQILKSHVFS-DFSS--LGTGK 119 (391)
Q Consensus 95 ~~~~~i~~~L~~qI~~-DF~~--~~~~~ 119 (391)
.++..++..|....-. ||.. +|.|.
T Consensus 76 ~E~~~l~~~i~~iaNt~~~nG~ylF~G~ 103 (239)
T 3pwx_A 76 TELKSYRDSIESSFNAQDEEGHFLFSGT 103 (239)
T ss_dssp HHHHHHHHHHHHHHTCBCTTCCBTTSTT
T ss_pred HHHHHHHHHHHHHHcccccCCceeeCCc
Confidence 7777777777663322 4653 44443
No 11
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.55 E-value=2.9e+02 Score=23.40 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHhHHHH-----HHHHHhhhhHhhhhhhHHHHHHHHHH--------HHHHHHHHHHHH
Q 016342 8 KNKAEQSETMV-----QEICRDIKKLDFAKKHITTTITALHR--------LTMLVSAVEQLQ 56 (391)
Q Consensus 8 k~kA~~SE~~V-----~eit~dIk~LD~AKkNLT~SIT~Lkr--------L~MLv~a~~qL~ 56 (391)
|...+++++.+ .++-.|.|.=|..=-|||.||.+|+. ++-..++++.|+
T Consensus 85 rn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~Lk 146 (167)
T 4gkw_A 85 RNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLS 146 (167)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 12
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=20.18 E-value=1.6e+02 Score=26.57 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcc-cCCCchHHHHHHH
Q 016342 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE-AYRDIPKITELRE 95 (391)
Q Consensus 17 ~V~eit~dIk~LD~AKkNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~-~Yksi~~I~~L~~ 95 (391)
....|..+|+.|+.+++|+...+..|+- --+++ .++.+.|+-+.+|...=. .=.+-..-..+..
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~---ae~aL------------~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~ 74 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSL---EESVL------------SQVTTAIQTAQEKIVYAGNGTLSDDDRASLAT 74 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3456889999999999999999987762 22222 234556666777763221 1113345567777
Q ss_pred HHHHHHHHHHHHHHh-hcc--ccCCCC
Q 016342 96 KFKNIKQILKSHVFS-DFS--SLGTGK 119 (391)
Q Consensus 96 ~~~~i~~~L~~qI~~-DF~--~~~~~~ 119 (391)
++..++..|....-. +|. .+|.|.
T Consensus 75 e~~~l~~~i~~~an~~~~nG~~lf~G~ 101 (248)
T 2d4x_A 75 DLQGIRDQLMNLANSTDGNGRYIFAGY 101 (248)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBTTSTT
T ss_pred HHHHHHHHHHHHHccCCCCCceeecCc
Confidence 888888777763333 465 245443
Done!