RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016343
(391 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 581 bits (1498), Expect = 0.0
Identities = 249/377 (66%), Positives = 301/377 (79%), Gaps = 10/377 (2%)
Query: 18 QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
+ V S + S A +S S+Y++ +DWDNLGFGL P DYMY
Sbjct: 34 SNSSVSSNPISSKAISLTRCDAVSS-------SSYTEVTELADIDWDNLGFGLVPTDYMY 86
Query: 78 TMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAI 136
MKC+ D F KG L R+G IELSPS+GVLNYGQGLFEG+KAYRKEDG ++LFRP++NAI
Sbjct: 87 IMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAI 146
Query: 137 RLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
R++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGKGSLYIRPLL+GSG +LGLAPA
Sbjct: 147 RMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA 206
Query: 197 PEYTFLVFASPVGNYFK-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKN 255
PEYTFL++ SPVGNYFK G+AP+NL VE+EFHRATPGG GGVK I NYA VLKA S AK
Sbjct: 207 PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKA 266
Query: 256 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 315
+G+SDVLYLD V+KK LEEVSSCNIFI+K N+ISTPA GTIL GITRKSII++A GF
Sbjct: 267 KGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGF 326
Query: 316 QVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF-KTGAQSVSRELYSTLVG 374
QVEER + VDELLEADEVFCTGTAVVV+PVGSITY+GKR+ + + G +VS++LY+ L
Sbjct: 327 QVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTS 386
Query: 375 IQTGLIKDNKGWTVEIN 391
+Q GLI+DN WTVE++
Sbjct: 387 LQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 540 bits (1391), Expect = 0.0
Identities = 261/364 (71%), Positives = 315/364 (86%), Gaps = 5/364 (1%)
Query: 32 FCRYTSQAAASLQQDCEPSAYS--DDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEK 88
F +Y +QAA++L+++ + Y DD AD +DWDNLGFGL PADYMY MKCS F +
Sbjct: 26 FAKYNAQAASALREERKKPLYQNGDDVYAD-LDWDNLGFGLNPADYMYVMKCSKDGEFTQ 84
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G LS YG I+LSPS+GVLNYGQ ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MP
Sbjct: 85 GELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMP 144
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208
SPS+DQF++AVKQTALANKRWVPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPV
Sbjct: 145 SPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPV 204
Query: 209 GNYFK-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 267
GNYFK G+A LNLYVE+E+ RA PGGAGGVK+I+NYAPVLKA+SRAK+RGFSDVLYLDSV
Sbjct: 205 GNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSV 264
Query: 268 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDEL 327
KK LEE SSCN+F++KG ISTPAT+GTIL GITRKS++EIASD G+QV E+A+ VDE+
Sbjct: 265 KKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEV 324
Query: 328 LEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWT 387
++ADEVFCTGTAVVVAPVG+ITY+ KR+E+KTG +SV ++L S LVGIQTGLI+DNKGW
Sbjct: 325 MDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWV 384
Query: 388 VEIN 391
+IN
Sbjct: 385 TDIN 388
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 507 bits (1306), Expect = 0.0
Identities = 207/338 (61%), Positives = 273/338 (80%), Gaps = 1/338 (0%)
Query: 55 DESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLF 113
DE ++ W+ LGF L P DYMY KC + F +G++ YG I +SP +G+LNYGQGLF
Sbjct: 14 DEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLF 73
Query: 114 EGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP 173
EG+KAYR EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+WVPPP
Sbjct: 74 EGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPP 133
Query: 174 GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKGLAPLNLYVEDEFHRATPGG 233
GKG+LYIRPLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + RA GG
Sbjct: 134 GKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGG 193
Query: 234 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPAT 293
GGVK+ +NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKGNI+STP T
Sbjct: 194 TGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPT 253
Query: 294 SGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGK 353
SGTIL G+TRKSI E+A D G+QVEER + VDELLEA+EVFCTGTAVVV V ++T+ K
Sbjct: 254 SGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDK 313
Query: 354 RIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 391
+++++TG +++S +L+ L IQ G+++D KGW VEI+
Sbjct: 314 KVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 466 bits (1200), Expect = e-164
Identities = 236/386 (61%), Positives = 289/386 (74%), Gaps = 5/386 (1%)
Query: 7 MIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNL 66
M CL S + S K F + ++AAAS+ ++ A +DE +DWD L
Sbjct: 1 MALRRCLPQSSTT---SSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKL 57
Query: 67 GFGLTPADYMYTMK-CSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 125
GF L D+M+ K C + FE+G LSRYG IEL+P++G+LNYGQGL EGMKAYR EDG+
Sbjct: 58 GFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGR 117
Query: 126 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 185
++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RWVPPPGKGSLY+RPLL
Sbjct: 118 ILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLF 177
Query: 186 GSGPILGLAPAPEYTFLVFASPVGNYFK-GLAPLNLYVEDEFHRATPGGAGGVKAISNYA 244
GSG LG+A APEYTFLVF SPV NYFK G A LNLYVE+ RA GG GGVKAISNY
Sbjct: 178 GSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYG 237
Query: 245 PVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRK 304
PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KGNII TPATSGTIL GITRK
Sbjct: 238 PVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRK 297
Query: 305 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSV 364
SIIEIA D G++VEER +PV+EL EA+EVFCTGTA VA VGSIT++ R E+K G V
Sbjct: 298 SIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIV 357
Query: 365 SRELYSTLVGIQTGLIKDNKGWTVEI 390
+++L S L+GIQTG I+D K W ++I
Sbjct: 358 TQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 442 bits (1140), Expect = e-156
Identities = 156/339 (46%), Positives = 209/339 (61%), Gaps = 11/339 (3%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
DW NLGFG D+M + + + RL YG +EL P++ VL+YGQ +FEG+KAYR
Sbjct: 18 DWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRH 77
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYI 180
+DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ WVPP G+G SLY+
Sbjct: 78 KDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYL 137
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-GLAPLNLYVEDEFHRATPGGAGGVKA 239
RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+ RA PGG G K
Sbjct: 138 RPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKV 197
Query: 240 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTIL 298
NYA L A + AK +G VLYLD+V +EEV N F I K + TP SG+IL
Sbjct: 198 GGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTV-TPPLSGSIL 256
Query: 299 AGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRG 352
GITR S++++A D G VEER + +DE E F GTA V+ P+G I Y+
Sbjct: 257 PGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKD 316
Query: 353 KRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 390
K G V+++LY L GIQ G ++D GW V++
Sbjct: 317 KEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 366 bits (941), Expect = e-127
Identities = 140/282 (49%), Positives = 176/282 (62%), Gaps = 4/282 (1%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
L P++ L+YGQ +FEG+KAYR DG++VLFRPD+NA RL A R+ +P S+++FID
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-GLA 216
A+K+ + WVP G SLYIRP + G+ P LG++PA EY F VFASPVG YFK G
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 217 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVS 276
++ V F RA PGG G KA NYA L A A +G+ L+LD + EV
Sbjct: 121 GVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVG 178
Query: 277 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 336
+ NIF +K + TP G+IL GITR SI+E+A D G +VEER I DEL EADEVF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 337 GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 378
GTA VV PVG I YRGK V+++LY L IQ G
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGE-GEVGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 339 bits (870), Expect = e-115
Identities = 154/310 (49%), Positives = 198/310 (63%), Gaps = 8/310 (2%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
GRL+ YG + L P S VL+YGQ FEG+KAYR DG +VLFRPD NA RL+ A R+ MP
Sbjct: 4 GRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMP 63
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
+ F++A++Q ANK WVPP G G SLY+RP ++G+ P LG+ PAPEY F VFASP
Sbjct: 64 ELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASP 123
Query: 208 VGNYFK-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 266
VG YFK GLAP++++V E+ RA PGG G VK NYA L A ++A +G V+YLD
Sbjct: 124 VGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP 183
Query: 267 VNKKNLEEVSSCNIF-ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVD 325
V +EEV + N F I + TP SG+IL GITR S++++A D G +VEER I +D
Sbjct: 184 VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDID 243
Query: 326 ELLEADE----VFCTGTAVVVAPVGSITYRGKRIEFKTGAQS-VSRELYSTLVGIQTGLI 380
EL E VF GTA V+ PVG I + GK + F +G V++ LY L IQ G
Sbjct: 244 ELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDF 303
Query: 381 KDNKGWTVEI 390
+D GW VE+
Sbjct: 304 EDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 258 bits (661), Expect = 7e-85
Identities = 111/272 (40%), Positives = 145/272 (53%), Gaps = 22/272 (8%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++A + LFR D++ RL A+R+ +P P ++ +A+K+
Sbjct: 3 GLHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELV 57
Query: 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKGLA-PLNL 220
AN SLYIRPLL LG+AP P E TF+VFASPVG Y KG + L
Sbjct: 58 AANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRL 110
Query: 221 YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 280
+ RA PGG G K + A A G + L LD + E S+ N+
Sbjct: 111 ITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNV 167
Query: 281 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAV 340
FI+K + TP G IL GITR S+IE+A + G +VEER I +DEL ADEVF TGTA
Sbjct: 168 FIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAA 227
Query: 341 VVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 372
V PV I RG + K G V+R+L L
Sbjct: 228 EVTPVTEIDGRGI-GDGKPG--PVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 238 bits (608), Expect = 2e-76
Identities = 112/297 (37%), Positives = 154/297 (51%), Gaps = 23/297 (7%)
Query: 88 KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCM 147
G L +LS L+YG G+FE ++AY + LFR D++ RL+ A+R+ +
Sbjct: 7 NGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGL 61
Query: 148 PSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P P ++ I+ + Q LA VP LYIRPL+ G G LG+ A E T +V ASP
Sbjct: 62 PRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASP 116
Query: 208 VGNYFKGLA---PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 264
VG Y KG + L + R P G G K NY + A AK G + L L
Sbjct: 117 VGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLL 175
Query: 265 DSVNKKNLEEVSSCNIFILKGN-IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIP 323
D + E + N+F +KG+ ++ TP SG IL GITR S++E+A + G VEER I
Sbjct: 176 DE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPIT 233
Query: 324 VDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 380
+++L +ADEVF T TA V PVG I R + G V+++L L IQ G I
Sbjct: 234 LEDLKQADEVFLTNTAAGVTPVGLIDGR----VGQPG--PVTKKLRELLTDIQYGEI 284
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 145 bits (369), Expect = 7e-41
Identities = 95/298 (31%), Positives = 142/298 (47%), Gaps = 39/298 (13%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++AY + G +FR ++ RL A+ M P S ++ ++A ++T
Sbjct: 20 ALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETL 78
Query: 164 LANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKGLAPLNL 220
N S YIRPL+ G G LGL P Y ++ A P G Y A
Sbjct: 79 RKN-------NLRSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEA---- 126
Query: 221 YVED-------EFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 272
+E + R P KA NY L A S A+ G+ + + LD + +
Sbjct: 127 -LEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYV 183
Query: 273 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADE 332
E S NIFI+K ++ TP + +IL GITR ++I +A + G +V E+ I +EL ADE
Sbjct: 184 AEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADE 243
Query: 333 VFCTGTAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 386
F TGTA + P+ + R G+R V+++L + TG +D GW
Sbjct: 244 AFFTGTAAEITPIREVDGRKIGNGRR-------GPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 146 bits (370), Expect = 9e-41
Identities = 98/306 (32%), Positives = 137/306 (44%), Gaps = 58/306 (18%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY G + FR ++ RL A+ + M P S+D+ ++A ++
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYFKGLAPLNL 220
N S YIRPL+ VG GL P + A P G Y L L
Sbjct: 89 KNNL-------KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAY---LGEEAL 135
Query: 221 YVEDE---------FHRA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 267
E + R P A KA NY + A + A+ G+ + L LD
Sbjct: 136 ----EKGIRVKVSSWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVE 188
Query: 268 NKKNLEEVSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPV 324
VS NIFI++ ++ TP + +IL GITR ++I +A D G +V ER I
Sbjct: 189 GY-----VSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITR 243
Query: 325 DELLEADEVFCTGTAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLI 380
DEL ADEVF TGTA V P+ + R GKR G ++ +L S I G
Sbjct: 244 DELYIADEVFFTGTAAEVTPIREVDGRQIGNGKR-----G--PITEKLQSAYFDIVRGRT 296
Query: 381 KDNKGW 386
+ W
Sbjct: 297 EKYAHW 302
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 134 bits (340), Expect = 2e-37
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 129 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 189 PILGLAPAPEYTFLVFASPVGNYFKG---LAPLNLYVEDEFHRATPGGAGGVKAISNYAP 245
GL+P ++ + L + L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 246 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 305
VL A+ A+ GF D L LD N+ E S+ NIFI+KG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 306 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 348
++++A + G +VEER + + +L EADE F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 122 bits (309), Expect = 2e-32
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 46/257 (17%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E ++ Y +G F D++ RL A+ + + P + ++ + +++ N
Sbjct: 23 FGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKGLAPLNLYVEDEF 226
+ G+G +YI+ + G GP P +V + L P L
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQ----PLPLPPAELL----- 122
Query: 227 HRATPGGAGGVKAIS--------------NYAP-VLKAISRAKNRGFSDVLYLDSVNKKN 271
GV+ I+ N VL AK G + + LD+
Sbjct: 123 -------EKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQ-EAKEAGADEAILLDADG--L 172
Query: 272 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 331
+ E SS N+FI+K ++ TP IL GITR ++IE+A + G VEER ++EL AD
Sbjct: 173 VTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTAD 232
Query: 332 EVFCTGTAVVVAPVGSI 348
EVF T T V PV I
Sbjct: 233 EVFLTSTTAEVMPVVEI 249
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 111 bits (279), Expect = 2e-28
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 33/250 (13%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANK 167
YG G+FE M+A DG+L L D + RL+ A R+ +P P + + A++ AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 168 RWVPPPGKGSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGN--YFKGLA----PL 218
+G IR +L G G G AP+ P V P+ G+ P+
Sbjct: 60 ----DIDEG--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPV 112
Query: 219 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 278
L G+K + NY + A A++RG + L+LD+ + E ++
Sbjct: 113 RL--------GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTAS 161
Query: 279 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 338
N+F +K + TP+ LAGITR+ +IE+A+ G+ V+ER + +++LL ADE F T +
Sbjct: 162 NLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNS 221
Query: 339 AVVVAPVGSI 348
+ VAPV +I
Sbjct: 222 LLGVAPVTAI 231
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 104 bits (262), Expect = 1e-25
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 173 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNYFKGLAPLNLYVEDEFHR 228
+LYIRP+ G G+AP PE T + +P+ G + L L F R
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEP-TGFS-LTL---SPFRR 141
Query: 229 ATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 287
T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K +
Sbjct: 142 PTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVKDGV 199
Query: 288 ISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 345
+ TP +GT L GITR+ +I + + G V E + ++ LEADEVF TG V PV
Sbjct: 200 VFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPV 257
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 103 bits (259), Expect = 3e-25
Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 43/284 (15%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+Y +FEG +AY G++ F+ +++ RL+ AE + P S+ + IDA K+ L
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETL 85
Query: 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF------KGLAP 217
A Y+RP+ ++G++ L A+ +YF KG+
Sbjct: 86 AANGLT------DAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIR- 138
Query: 218 LNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEE 274
L++ ++ R P A KA Y ++ IS A+ +G++D L LD + + E
Sbjct: 139 LDI---AKWRRPDPETAPSAAKAAGLY--MICTISKHAAEAKGYADALMLDY--RGYVAE 191
Query: 275 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVF 334
+ NIF +K +I TP T L GITR+++IE+A G +V ER I +EL E F
Sbjct: 192 ATGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECF 250
Query: 335 CTGTAVVVAPVGSI-TYRGKRIEFKTGAQSVSREL---YSTLVG 374
TGTA V PV I YR F GA ++R+L Y LV
Sbjct: 251 LTGTAAEVTPVSEIGEYR-----FTPGA--ITRDLMDDYEALVR 287
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 101 bits (255), Expect = 1e-24
Identities = 82/274 (29%), Positives = 116/274 (42%), Gaps = 75/274 (27%)
Query: 104 GVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQT 162
G L YG G+FEG++AY +G +FR ++ RL A+ + + P S ++ + V +T
Sbjct: 25 GFL-YGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78
Query: 163 ALANKRWVPPPGKGSLYIRPLL---VGSGPILGLAP--APEYTFLVFASPVGNYFKGLAP 217
N YIR ++ VG LGL P P+ T + A P+G Y L
Sbjct: 79 LRKN-------NLRDAYIRLVVSRGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGEL-- 126
Query: 218 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVL--------YLDSV-- 267
Y LK I+ + R D L YL+++
Sbjct: 127 -------------------------YEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILA 161
Query: 268 ----NKKNLEE---------VSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIAS 311
N ++E V+ NIFI+K + TP T L GITR ++IEIA
Sbjct: 162 KIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAK 221
Query: 312 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 345
+ G V E + +L ADEVF TGTA V PV
Sbjct: 222 ELGIPVREELFTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 81.9 bits (203), Expect = 2e-17
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 39/254 (15%)
Query: 109 GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 168
G G+FE + DG+ + RL A + +P P +D++ AV LA +
Sbjct: 38 GDGVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAV---ELAIEE 89
Query: 169 WVPPPGKGSL---YIRPLLVGSGPILGLAPAPEYTFLVFASPVGN-----YFKGLAPLNL 220
W P + +L Y R G P T V SPV +G++ + L
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAP----------TAWVTVSPVPERVARARREGVSVITL 139
Query: 221 ---YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS---VNKKNLEE 274
Y D RA P G K +S YA + A+ A RG DV++ + V LE
Sbjct: 140 DRGYPSDAAERA-PWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTSTDGYV----LEG 193
Query: 275 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVF 334
+S + I + + TP IL G T+ ++ E+A + G+ E RA+ +L AD V+
Sbjct: 194 PTS-TVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVW 252
Query: 335 CTGTAVVVAPVGSI 348
+ + A V ++
Sbjct: 253 LVSSVRLAARVHTL 266
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 74.2 bits (183), Expect = 4e-15
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 255 NRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 314
N + L LD+ N+ E ++ NIF KGN + TP S +AG+ R+ ++ + G
Sbjct: 154 NSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALG 211
Query: 315 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 348
+++EE ++ELL ADEVF T + + V PV +I
Sbjct: 212 YEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
Score = 38.3 bits (90), Expect = 0.004
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
++S S L YG G F K +G++ L D + RLQ A R+ +P P D +
Sbjct: 9 QISVSDRGLQYGDGCFTTAKVR---NGKIELL--DLHLERLQDAAARLGIPLPDWDALRE 63
Query: 158 AVKQTAL 164
+ Q A
Sbjct: 64 EMAQLAA 70
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 72.3 bits (177), Expect = 3e-14
Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 30/254 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
YG G+FEG+++Y +F ++ RL A+ + + P ++D+ +AV QT N
Sbjct: 29 YGDGVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 167 KRWVPPPGKGSLYIRPLLVGSGP-ILGLAP--APEYTFLVFAS-----PVGNYFKGLAPL 218
YIR L+V G LGL P + + ++ A P Y GL+ +
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVV 135
Query: 219 NLYVEDEFHRATPGGAG-GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 277
++ R TP +K+++ VL I A G + L L+ + + E S
Sbjct: 136 SVASR----RNTPDALDPRIKSMNYLNNVLVKI-EAAQAGVLEALMLN--QQGYVCEGSG 188
Query: 278 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 337
N+F++K + TP + L GITR S+IE+ EER ++ ADEVF TG
Sbjct: 189 DNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTG 248
Query: 338 TAVVVAPVGSITYR 351
TA + PV + R
Sbjct: 249 TAAELIPVVKVDSR 262
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 71.3 bits (175), Expect = 5e-14
Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 47/276 (17%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G+L + ++ +G G++E ++ Y +G LF +++ RL A ++ +
Sbjct: 6 GQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NG--KLFTVNEHIDRLYASAAKIRID 60
Query: 149 SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P + ++ + + N G +Y + + G P PA ++
Sbjct: 61 IPYTKEELHQLLHELVEKNNL-----NTGHVYFQ-VTRGVAPRNHQFPAGTVKPVI---- 110
Query: 208 VGNYFKGLAPLNLYVEDEFHRATPGGAGGVKAIS--------------NYAPVLKAISRA 253
+ P E+ GVKAI+ N + A A
Sbjct: 111 TAYTKEVPRP-----EENL-------EKGVKAITVEDIRWLRCDIKSLNLLGNVLAKQEA 158
Query: 254 KNRG-FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 312
+G + +L+ + E SS N++ +K ++ T + IL GITR I+ A +
Sbjct: 159 HEKGAYEAILHRGGT----VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEE 214
Query: 313 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 348
G V+E +ELL ADEVF + T + PV I
Sbjct: 215 NGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI 250
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 70.0 bits (172), Expect = 2e-13
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 274 EVSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 331
E +S N +I+ G +++ PA + IL GITR ++I++A + G +VEER + E A
Sbjct: 181 EGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAR 239
Query: 332 EVFCTGTAVVVAPVGSI 348
E F T + V PV I
Sbjct: 240 EAFITAASSFVFPVVQI 256
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 68.1 bits (167), Expect = 6e-13
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 279 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 338
N+F +KG+I+ TP+ IL GITR +I++ + G +V+E +ELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 339 AVVVAP---VGSITYRGKR 354
+ P + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 66.8 bits (164), Expect = 2e-12
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 257 GFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQ 316
+ L LDS + E + N+F KG ++ TP +AG+ R+ I+E+ + G+
Sbjct: 158 EADEALVLDSEG--WVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYP 215
Query: 317 VEERAIPVDELLEADEVFCTGTAVVVAPV---GSITYRGKRIEFKTGAQSVSRELYSTLV 373
V E ++ELL+ADEVF + + V PV G +Y S L L
Sbjct: 216 VVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-------------SGTLTRYLQ 262
Query: 374 GI 375
+
Sbjct: 263 PL 264
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
LS S YG G F R DGQ+ L ++ RLQ ER+ +P Q
Sbjct: 11 SLSVSDRSTQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQ 65
Query: 158 AVKQTALA 165
+KQ A
Sbjct: 66 EMKQLAAE 73
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 51.6 bits (123), Expect = 3e-07
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 236 GVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 281
GV+AIS N P + A ++A+ +G + L+ V + E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 282 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 341
++K + T + IL GI R+ ++ +A V+E V ++ +ADE F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 342 VAPV 345
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 37.7 bits (88), Expect = 0.007
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 242 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI-FILKGNIISTPATSGTILAG 300
NY P + A+ RG ++LD + + E + N+ F+ + P IL+G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 301 ITRKSIIEIA-----SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 345
T + ++E+A V++R I V+E ADE+ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 32.6 bits (75), Expect = 0.34
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 292 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 326
AT G IL + + AS G ++E+ IP+ +
Sbjct: 216 ATEGGILGALWE---VAEASGVGLRIEKDKIPIRQ 247
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.8 bits (72), Expect = 0.64
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 2 MRPATMIRNACLRNFSQSLR------------VGSAFLKSGDFCRYTSQAAASLQQDCEP 49
+ P T RN ++SLR +A LK R+TS A+L+Q EP
Sbjct: 423 LSPRTTRRNMLATELTESLRRNLLWERQQKSATANAVLKR----RHTSHDVANLKQYPEP 478
Query: 50 SAYSDDESADHMDWD 64
D+ + W+
Sbjct: 479 PGAKKDKDVKNSSWN 493
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 31.2 bits (71), Expect = 0.76
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 191 LGLAPAPEYTFLVFASPVGNYFKGLAPLNLYVEDEFHRATPGGAGGV 237
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMYHPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 29.9 bits (68), Expect = 1.7
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 257 GFSDVLYLDSVNKKNLEEVSSCNIFI-LKGNIISTPATSGTILAGITRKSIIEIASDCGF 315
+V+ L+ + + E + N+F+ G +++TP S +L G+ R ++
Sbjct: 124 EADEVILLNE--RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELL-----DAG 176
Query: 316 QVEERAIPVDELLEADEVFC 335
+ E + VD+L A ++
Sbjct: 177 RAREAVLTVDDLKSARAIWV 196
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 30.0 bits (67), Expect = 2.1
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 108 YGQG----------LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 154
YGQG ++ G + R+ED Q+ L NA +L T + P I
Sbjct: 149 YGQGFPSFLRNKVFIYRGKEYERREDFQMQLMSQFPNAEKLNTTS----APGDDIKN 201
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 28.8 bits (65), Expect = 2.2
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 256 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS-GTILAG---ITRKSIIEIAS 311
+ + D L L + K + +F+ K +++ P L G I RK+
Sbjct: 23 QSYLDPLLLSLLLPKRGRPL----VFVAKDELLNLPLLGWLMRLLGCIFIDRKNA----- 73
Query: 312 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 371
++ A ++ L+E + G V++ P G+ + G+ + FK GA ++RE
Sbjct: 74 ------KDAANTLEYLVE---LLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 372 LV 373
+V
Sbjct: 125 IV 126
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 64 DNLGFGLTP--ADYMYTMKCSNDYFEKGRLSRYG 95
D LGFG +P AD +YT++ + E+ L RY
Sbjct: 239 DLLGFGRSPKPADSLYTLREHLEMIERSVLERYK 272
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 73 and 85 amino acids
in length.
Length = 83
Score = 27.2 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 183 LLVGSGPILGLAPAPEYTFL 202
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 27.7 bits (62), Expect = 4.4
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 256 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 315
+ F D L L ++ L F+ K + P G +L + +I
Sbjct: 8 QSFLDPLVLSAL----LPRKLGRVRFVAKKELFYVPLL-GWLLRLL--GAI-------FI 53
Query: 316 QVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 373
L EA E+ G +++ P G+ + GK + FK GA ++ E +V
Sbjct: 54 DRSNGRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 28.8 bits (65), Expect = 6.3
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 336 TGTAVVVAPVGSITYRG--------KRIE--FKTGAQSVSREL 368
T TAVVVA GS TY G R + F G SVS L
Sbjct: 253 TATAVVVA-TGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLL 294
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.7 bits (64), Expect = 7.7
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 265 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI--IEIASDCGFQVEER-- 320
D V+KK +E ++ + LKG PA + +L GITR +I I S FQ +
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842
Query: 321 -----AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 358
A+ D L + E G + PVG+ Y+ K+I +
Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVLR 2882
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 293
Score = 27.8 bits (63), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 308 EIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAVVVAP 344
EIA S G ++EE AIPV E+L D + G V + P
Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVP 267
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.1 bits (63), Expect = 9.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 96 KIELSPSSGVLNYGQGLFEG---------MKAYRKEDGQLVLFRP 131
K +L+ S ++N+G L+EG M A ++ +LV+F P
Sbjct: 191 KRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,180,933
Number of extensions: 1989701
Number of successful extensions: 1676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 51
Length of query: 391
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 292
Effective length of database: 6,546,556
Effective search space: 1911594352
Effective search space used: 1911594352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)