RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016343
(391 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 250 bits (640), Expect = 3e-81
Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 17/345 (4%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 21 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+
Sbjct: 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK--GLAPLNLYVEDEFHRATPGGAGGVK 238
RP+L+G+ P LG++ V PVG YF + P++L + F RA GG G K
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYK 200
Query: 239 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATS 294
NY P + A RG VL+L + + E + + TP +
Sbjct: 201 LGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLN 260
Query: 295 GTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGS 347
G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV
Sbjct: 261 GVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320
Query: 348 ITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 390
I Y+ + + T + L IQ G W +
Sbjct: 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYG--IRAHEWMFPV 363
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 182 bits (462), Expect = 3e-55
Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 19/309 (6%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G + R+ ++ S L+YG +FEG++ Y G V+FR ++ RL A+ P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP 67
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFAS 206
+ A + + S YIRPL+ +G+ P Y+ ++ A
Sbjct: 68 VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 207 PVGNYFKGLAPLN--LYVEDEFHRATPGGAGGVKAIS-NYAPVLKAISRAKNRGFSDVLY 263
P G Y A + ++RA P NY L S A+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 264 LDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIP 323
LD + E + N+F +K ++ TP + + L GITR +II++A + G +V E+ +
Sbjct: 182 LD--VNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 239
Query: 324 VDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYSTLVGIQTGLIKD 382
+ L ADEVF +GTA + PV S+ G ++ E + G V++ + G+ TG +D
Sbjct: 240 RESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCG--PVTKRIQQAFFGLFTGETED 295
Query: 383 NKGWTVEIN 391
GW ++N
Sbjct: 296 KWGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 112 bits (279), Expect = 5e-29
Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 22/283 (7%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
++ + ++++ +G G++E +K Y E +F +++ RL AE++ +
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61
Query: 149 SPSIDQFI-DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P + + N+ G +Y + S ++ +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 208 VGNYFKGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 267
L V+ F +K++ N + A A +G + +
Sbjct: 117 ENPRPLE--NLEKGVKATFVEDIRWLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR-- 171
Query: 268 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDEL 327
+ E SS N+F +K I+ T + IL GITR +I A++ V+E E
Sbjct: 172 -NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEA 230
Query: 328 LEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELY 369
L+ DE+F T T + PV I GK I + K G +R+L
Sbjct: 231 LKMDELFVTSTTSEITPVIEI--DGKLIRDGKVG--EWTRKLQ 269
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 103 bits (258), Expect = 4e-26
Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 14/250 (5%)
Query: 99 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
L+ S +G G F + DG++ + RLQ +R+ + Q
Sbjct: 12 LAVSDRATQFGDGCFTTARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE 66
Query: 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKGLAPL 218
K G L + G + T ++ + ++ L
Sbjct: 67 -------MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNE 119
Query: 219 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 278
+ + R N + S + + L LD ++ + E +
Sbjct: 120 GITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLD--SEGWVTECCAA 177
Query: 279 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 338
N+F KGN++ TP + GI R+ I + + +Q+ E ++E L+ADE+
Sbjct: 178 NLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNA 237
Query: 339 AVVVAPVGSI 348
+ V PV +
Sbjct: 238 LMPVMPVCAC 247
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 29.4 bits (64), Expect = 0.67
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 4/135 (2%)
Query: 30 GDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKG 89
+ + A + + + + + + +
Sbjct: 214 EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQ 273
Query: 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP-DQNAIRLQTGAERMCMP 148
L G +E+ + L M + G N +R T
Sbjct: 274 GLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSF---ATT 330
Query: 149 SPSIDQFIDAVKQTA 163
+ +D ++ V+ A
Sbjct: 331 AEDVDHLLNQVRLAA 345
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
1260]}
Length = 53
Score = 25.7 bits (56), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 248 KAISRAKNRGFSDVLYLDSVNK-KNLEEVSSCNIFILK 284
AI+ K G + Y +++NK K +EEV++ ILK
Sbjct: 13 DAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILK 50
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
[TaxId: 12353]}
Length = 110
Score = 25.5 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 270 KNLEEVSSCNIFILKGNIISTPATSGTILA 299
KN ++S I + +G I T A +GT A
Sbjct: 12 KNFASINS-GILLSQGKFIMTRAVNGTTYA 40
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 25.6 bits (56), Expect = 9.6
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 103 SGVLNYGQGLF----EGMKAYRKEDGQLVLFRPDQNAIRLQTG---AERMCMPSPSIDQF 155
G+ N+ + M+A + + F D AE + +P + F
Sbjct: 98 VGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 157
Query: 156 IDAVKQTA 163
+D +
Sbjct: 158 LDNTHSSR 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,460,470
Number of extensions: 69502
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 9
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)