Citrus Sinensis ID: 016344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKFGQQQSPLKAEPKALIF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccEEEEccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccEEEEccccHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHcccHHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssstkkkrpkpksnsssssssssssswswmteppqslfpskqDLLRLITVVAIASSVALTCNYLANflnstskpfcdsnllldspqsptdscepcpsngechqgklecfhgyrkhgklcvedgdinetaGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFeldnpvylytkkrTMETVGRYLEsrtnsygmkelkcpellaehykplscrihqwvSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENalmsksvngecepwVVASRLRdhlllpkerkdpVIWKKVEELVQedsrvdqypkllkgESKVVWEWQVegslssskmrkkgeaskwrsaegrdmkfgqqqsplkaepkalif
Flexible Loop (DISEMBL)
mssstkkkrpkpksnssssssssssssWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRylesrtnsygmKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRlrdhlllpkerkdpviwKKVEelvqedsrvdqypkllkgeskvvwewqvegslssskmrkkgeaskwrsaegrdmkfgqqqsplkaepkalif
Low Complexity Region (SEG)
MssstkkkrpkpksnsssssssssssswsWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPvcsllvgcllllWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKFGQQQSPLKAEPKALIF
Disordered region (IsUnstruct)
******************************************QDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLL*******************CHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQV********************************************
Disordered Region (DISOPRED)
***************************************PSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIW*E*NDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEE*************PWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQ***************************************P**LIF
Disordered Region (DISEMBL)
**********************************PQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDS***************ECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEG*******************EGRD*******************
Disordered Region (DISPRO)
*********************************PPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLS***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKFGQQQSPLKAEPKALIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
255575726	373	conserved hypothetical protein [Ricinus	0.933	0.978	0.622	1e-136
224138028	382	predicted protein [Populus trichocarpa]	0.959	0.981	0.632	1e-135
356540585	381	PREDICTED: uncharacterized protein LOC10	0.938	0.963	0.598	1e-124
225427312	383	PREDICTED: uncharacterized protein LOC10	0.961	0.981	0.591	1e-123
356495558	377	PREDICTED: uncharacterized protein LOC10	0.925	0.960	0.592	1e-122
357482303	374	hypothetical protein MTR_5g014010 [Medic	0.884	0.925	0.592	1e-119
449461577	404	PREDICTED: uncharacterized protein LOC10	0.905	0.876	0.574	1e-111
240256408	387	uncharacterized protein [Arabidopsis tha	0.913	0.922	0.532	1e-102
297794583	389	hypothetical protein ARALYDRAFT_494322 [	0.882	0.886	0.497	2e-92
8885597	375	unnamed protein product [Arabidopsis tha	0.890	0.928	0.489	1e-84

>gi|255575726|ref|XP_002528762.1| conserved hypothetical protein [Ricinus communis] gi|223531765|gb|EEF33584.1| conserved hypothetical protein [Ricinus communis]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/389 (62%), Positives = 297/389 (76%), Gaps = 24/389 (6%)

Query: 1   MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVAL 60
           MSSS+  KR KP        + S SSS + +T PP +LFPSK++ +RLI V+AIASSVA 
Sbjct: 1   MSSSSTNKRRKP--------NLSPSSSPTLLTGPPNNLFPSKEEFVRLIAVLAIASSVAF 52

Query: 61  TCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLC 120
           TCN +A ++N ++KPFCDSN       S ++ C PCP NGEC QGKLEC  GYRKH  +C
Sbjct: 53  TCNLIATYINPSTKPFCDSNT-----DSFSEFCVPCPENGECTQGKLECAEGYRKHRNIC 107

Query: 121 VEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDN 180
           +EDGDINE A +LS WVEN LC AYAQ+LCDG G+IW ++NDIW DL+GH+LM+ F+ DN
Sbjct: 108 IEDGDINERAKKLSEWVENHLCEAYAQYLCDGIGTIWFQDNDIWYDLDGHQLMENFQPDN 167

Query: 181 PVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVP 240
             Y+Y K++ ME + R LE RTNS+G KELKCP+L+AEHYKP +CR  QW+S HA +I  
Sbjct: 168 ATYIYAKRKAMEMIVRLLEIRTNSHGNKELKCPDLVAEHYKPFTCRFRQWISNHAFVIAS 227

Query: 241 VCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLR 300
           +CSL+VG +LLL K+ RR Y + R EELYHQVCE+LEENALMSK  NGEC+ WVVAS+LR
Sbjct: 228 LCSLVVGAVLLLRKLQRRWYLSARGEELYHQVCEVLEENALMSKQSNGECDSWVVASQLR 287

Query: 301 DHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKG 360
           DHLLLPKERKDPV+WK+VE+LVQEDSRVD+YPKL+KGESKVVWEWQVEGS SS ++RKK 
Sbjct: 288 DHLLLPKERKDPVLWKRVEQLVQEDSRVDRYPKLVKGESKVVWEWQVEGSWSSGRIRKK- 346

Query: 361 EASKWRSAEGRDMKFGQQQSPLKAEPKAL 389
           EASK +S+E          SP KA+  AL
Sbjct: 347 EASKLKSSE----------SPPKAKFDAL 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138028|ref|XP_002326500.1| predicted protein [Populus trichocarpa] gi|222833822|gb|EEE72299.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/381 (63%), Positives = 298/381 (78%), Gaps = 6/381 (1%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           SST K+RPK   +SSSS   + SS      EPP +LFPSKQ+ LRLI V+AIASSVALTC
Sbjct: 2   SSTPKRRPKRDLSSSSSHPYTISSK----IEPPHNLFPSKQEFLRLIAVLAIASSVALTC 57

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           N++AN+++ ++KPFCD++L   S  S ++SCEPCP NGEC+QGKLEC  GYRKH   C+E
Sbjct: 58  NFIANYIDHSTKPFCDTSLD--SSDSLSNSCEPCPRNGECNQGKLECARGYRKHRNTCIE 115

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGD+ E A +L   VEN LC AYA FLC GTG +WV+E+DI NDL+GH+L++ +  DNPV
Sbjct: 116 DGDVYERAKKLLEGVENHLCEAYADFLCYGTGIMWVQEDDILNDLDGHQLLENYSSDNPV 175

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
           Y+YTK + MET+   L++RTN  G KE KCP+LL EHYKP +C + QW+S HAL+IVPVC
Sbjct: 176 YVYTKMKAMETISEELQTRTNPNGKKEFKCPDLLVEHYKPFTCHLRQWISEHALVIVPVC 235

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDH 302
           +L+VG   L+WK+ RR Y + R EELYHQVC+ILEE ALMSK VN ECEPWVVASRLRDH
Sbjct: 236 ALVVGFAFLVWKIRRRWYLSTRGEELYHQVCDILEERALMSKRVNAECEPWVVASRLRDH 295

Query: 303 LLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEA 362
           LL PKERKD V+WKKVE+LV+EDSRVD+YPKL+KGESKVVWEWQVEGSLSS +MRKK E+
Sbjct: 296 LLSPKERKDFVLWKKVEDLVREDSRVDRYPKLVKGESKVVWEWQVEGSLSSGRMRKKVES 355

Query: 363 SKWRSAEGRDMKFGQQQSPLK 383
           SK +S +G    F +++  LK
Sbjct: 356 SKLKSNDGVKENFDKERHELK 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540585|ref|XP_003538768.1| PREDICTED: uncharacterized protein LOC100784375 [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/376 (59%), Positives = 282/376 (75%), Gaps = 9/376 (2%)

Query: 19  SSSSSSSSSWSWMT-EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPF 76
           S+S+S   S S M  EPPQ+L PSK D  RL+ V+A+AS VA TCN+L  +  +  SKPF
Sbjct: 12  SNSNSEGCSLSLMGREPPQNLLPSKHDFPRLVLVIALASLVAWTCNFLFTSLFHPPSKPF 71

Query: 77  CDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRW 136
           CD+NL   SP    D C+PCPSNGEC+ GKLEC  GY++HG LC EDGDINE+A +L   
Sbjct: 72  CDTNL--HSPDYFLDICQPCPSNGECNDGKLECHQGYQRHGNLCAEDGDINESARKLLER 129

Query: 137 VENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGR 196
           VE+ LC  YAQFLC GTG IWV E+D+WN  E    +K+   DN +Y YTK+R +ET+G+
Sbjct: 130 VEHHLCEKYAQFLCTGTGIIWVHEDDLWNYFEPVGNVKV---DNALYNYTKQRAVETMGK 186

Query: 197 YLESRTNS-YGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKV 255
            LE+R NS +GMKE KCP+ LAEHYKP +C I QW+S H L+++P+C++LVGC  L W V
Sbjct: 187 LLETRLNSSHGMKEFKCPDQLAEHYKPYTCCIRQWISQHILVVLPICAMLVGCTALCWNV 246

Query: 256 HRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIW 315
            ++   + RVEELY +VCEILE+NAL SKS NGECEPWVVASRLRDHLLLP+ERK+P++W
Sbjct: 247 RQKLSMSRRVEELYDKVCEILEDNALTSKSANGECEPWVVASRLRDHLLLPRERKNPLLW 306

Query: 316 KKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKF 375
           KK+EELVQEDSR+D+YPKL+KGESKVVWEWQVEGSLS+SKM+K+ +ASK    E  D+  
Sbjct: 307 KKLEELVQEDSRIDRYPKLVKGESKVVWEWQVEGSLSASKMKKRRDASKTMVNESTDLNH 366

Query: 376 GQQQSPLKAEPKALIF 391
            QQ   +K EP   +F
Sbjct: 367 -QQHPAMKTEPTVPLF 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427312|ref|XP_002282079.1| PREDICTED: uncharacterized protein LOC100243743 [Vitis vinifera] gi|297742158|emb|CBI33945.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/382 (59%), Positives = 299/382 (78%), Gaps = 6/382 (1%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           +ST +KRPKP  +S S+ S SSSSS + + EPP++ FPSK +L +L+ V+AIA+SVA  C
Sbjct: 2   ASTPRKRPKP--HSKSTHSPSSSSSLNALMEPPENFFPSKPELFKLLAVIAIATSVAALC 59

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           NY+   L+  SKPFCD+N   DS   P+D CEPCPSN EC+QG +EC  GYRKHGKLC+E
Sbjct: 60  NYVVTILSRHSKPFCDTNA--DSQYLPSDLCEPCPSNAECYQGMMECVRGYRKHGKLCIE 117

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGDINETA +L+  +E  +C  YAQFLC GTGS+WV+E+++WND++  ++M+   L+N +
Sbjct: 118 DGDINETAKKLANRIETHVCEGYAQFLC-GTGSVWVQEDEVWNDVDELKMMENLGLENAI 176

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
            ++TK+R ME +   LE++ N  G+KELKCP LLAEHYKP SCR+ QW+S HAL+++P+C
Sbjct: 177 DMHTKQRAMEMIDGLLETKINHRGIKELKCPNLLAEHYKPFSCRVQQWISNHALVLMPIC 236

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDH 302
            LLVG +LLL ++ +RR  + R EELY+Q+C+ILEENA+M+K  +GE EPWVV S LRDH
Sbjct: 237 GLLVGSILLLRRIRQRRNLSARAEELYNQICDILEENAMMTKGGDGEGEPWVVVSWLRDH 296

Query: 303 LLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEA 362
           LLLPKERKDP++W+KVEELVQEDSR+D+YPKL+KGESKVVWEWQVEGSL SS++RKK EA
Sbjct: 297 LLLPKERKDPLLWRKVEELVQEDSRLDRYPKLVKGESKVVWEWQVEGSL-SSRLRKKREA 355

Query: 363 SKWRSAEGRDMKFGQQQSPLKA 384
           SK + + G ++  G Q   +KA
Sbjct: 356 SKLKPSGGTNINSGVQSPAMKA 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495558|ref|XP_003516643.1| PREDICTED: uncharacterized protein LOC100779650 [Glycine max]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/375 (59%), Positives = 284/375 (75%), Gaps = 13/375 (3%)

Query: 19  SSSSSSSSSWSWM-TEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFC 77
           S+S+S S S+S M  EPPQ+L PSK D  RL+ VVA+AS VA TCN    FL + SKPFC
Sbjct: 12  SNSNSESCSFSLMGREPPQNLLPSKHDFPRLVLVVALASLVAWTCN----FLFTPSKPFC 67

Query: 78  DSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWV 137
           D NL   SP   +D CEPCPSNGEC+ GKL+C  GY++HG LCVEDGDINE+A +L   V
Sbjct: 68  DPNL--HSPDYFSDICEPCPSNGECNDGKLKCLQGYQRHGNLCVEDGDINESARKLLERV 125

Query: 138 ENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRY 197
           E+ LC  YAQFLC GTG+IWV E+D+WN  E    +K+   DN +Y YTK++  ET+G+ 
Sbjct: 126 EHHLCEEYAQFLCTGTGTIWVREDDLWNYFEPVGNVKV---DNALYKYTKQKAFETMGKL 182

Query: 198 LESRTNS-YGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVH 256
           L++R NS +GMKE KCP+ LAEHYK  +C I QW+S H L+++P+C++LVGC  L W V 
Sbjct: 183 LDTRLNSSHGMKEFKCPDQLAEHYKSYACCIRQWISQHILVVLPICAMLVGCTALFWSVR 242

Query: 257 RRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWK 316
           ++   + R+EELY++VCEILEENAL SKS NGECEPWVV+SRLRDHLLLP+ERK+P++WK
Sbjct: 243 QKLCMSRRIEELYNKVCEILEENALTSKSANGECEPWVVSSRLRDHLLLPRERKNPLLWK 302

Query: 317 KVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKFG 376
           KVE++VQEDSR+D+YPKL+KGESKVVWEWQVEGSLS SKM+++ +ASK R  E  D+   
Sbjct: 303 KVEKMVQEDSRIDRYPKLVKGESKVVWEWQVEGSLSFSKMKRR-DASKTRVNESTDLNH- 360

Query: 377 QQQSPLKAEPKALIF 391
           Q +  ++ EP   +F
Sbjct: 361 QHRPAMRTEPMEPLF 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482303|ref|XP_003611437.1| hypothetical protein MTR_5g014010 [Medicago truncatula] gi|355512772|gb|AES94395.1| hypothetical protein MTR_5g014010 [Medicago truncatula]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 273/356 (76%), Gaps = 10/356 (2%)

Query: 33  EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPFCDSNLLLDSPQSPTD 91
           EPP +L PSK +  +L+ V+ +AS VA + N L  +FL+ ++KPFCD+N L +    P D
Sbjct: 22  EPPPNLLPSKHEFPKLLLVLTVASLVAWSSNLLFTSFLHPSTKPFCDTNSLHN--HFP-D 78

Query: 92  SCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCD 151
           SCEPCPSNGEC+ GKLEC  GY+KHG LCVEDGDIN++A +++  VE  LC  YAQFLC 
Sbjct: 79  SCEPCPSNGECNDGKLECLRGYQKHGNLCVEDGDINDSARKIADTVERHLCGEYAQFLCS 138

Query: 152 GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELK 211
           GTGSIWV ++D+WN +E  E +K     N +Y YTK++  + + + LE R  ++GMKE K
Sbjct: 139 GTGSIWVHDDDLWNYIEPVENVK---EGNALYNYTKQKAFDMMDKLLEMRLTTHGMKEFK 195

Query: 212 CPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQ 271
           CP+ L E YKP +CR+ QW++ H L+++P+C++LVGC++L W V R+   + RVEELY++
Sbjct: 196 CPDSLVEQYKPYACRLRQWITQHILVVLPICAMLVGCMILFWNVRRKLRVSRRVEELYNK 255

Query: 272 VCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQY 331
           VCEILEENAL SKSVNGECEPWVVASRLRDHLLLP+ERKDP++WKKVEELVQEDSRVD+Y
Sbjct: 256 VCEILEENALTSKSVNGECEPWVVASRLRDHLLLPRERKDPLLWKKVEELVQEDSRVDRY 315

Query: 332 PKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRSAEGRDMKFGQQQSP-LKAEP 386
           PKL+KGESKVVWEWQVEGSLS++KM  K +ASK  +   R+ +   QQ P +KAEP
Sbjct: 316 PKLVKGESKVVWEWQVEGSLSATKMLTKRDASK--TMVNRNTELNSQQRPTMKAEP 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461577|ref|XP_004148518.1| PREDICTED: uncharacterized protein LOC101208017 [Cucumis sativus]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/369 (57%), Positives = 267/369 (72%), Gaps = 15/369 (4%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSW-----------MTEPPQSLFPSKQDLLRLITV 51
           SST KKR K K N +S   S S S               + EPP+  FPSK DL  LITV
Sbjct: 2   SSTPKKRTKVKRNPNSDVGSGSGSGVDSSVSSSSLLLKSIKEPPRDFFPSKDDLAALITV 61

Query: 52  VAIASSVALTCNYLANFLNSTSK-PFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECF 110
           + IA  V ++CN+  + L+S    PFCD++   DS    +D CEPCP +GEC  GKLEC 
Sbjct: 62  LIIACFVFVSCNFFVSRLSSRHPIPFCDTDA--DSSDFISDVCEPCPRHGECRDGKLECL 119

Query: 111 HGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGH 170
           HGYRKHG+LC+EDG INE   +LS W+E+ LC A A+FLCDG G +WV+ENDIW+DL+G 
Sbjct: 120 HGYRKHGRLCIEDGVINEAVNKLSEWLESHLCEANAKFLCDGIGIVWVKENDIWDDLDGK 179

Query: 171 ELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQW 230
           EL++    DN   +Y K + +ET+G  L++R NS G+KELKCP+LLAE YKP +CRI  W
Sbjct: 180 ELVESIGSDNTTLMYAKSKALETIGGLLQTRQNSLGIKELKCPDLLAESYKPFTCRIRHW 239

Query: 231 VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGEC 290
           V  HA +++PV  LLVGC  LLWK++RR+Y   R E+LY+QVCEILEENAL S   +G+C
Sbjct: 240 VLQHAFVVLPVFLLLVGCTWLLWKLYRRQYLTNRAEDLYNQVCEILEENALTSTRNSGQC 299

Query: 291 EPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGS 350
           E WVVASRLRDHLLLP+ER++P++WKKVEELVQEDSR+D+YP+L+KG+ K VWEWQVEGS
Sbjct: 300 ESWVVASRLRDHLLLPRERRNPLLWKKVEELVQEDSRIDRYPRLVKGDGKEVWEWQVEGS 359

Query: 351 LSSSKMRKK 359
           LSSS M+KK
Sbjct: 360 LSSS-MKKK 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256408|ref|NP_199468.5| uncharacterized protein [Arabidopsis thaliana] gi|332008015|gb|AED95398.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/364 (53%), Positives = 255/364 (70%), Gaps = 7/364 (1%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSS-WSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           S  +KRPK ++ +  +  SSSSSS    M EPPQSLFPSK +   L+ V+ +A +VA TC
Sbjct: 3   SIPRKRPKSETRTGRTPKSSSSSSPIRSMLEPPQSLFPSKGEFFTLLKVLLVACAVAFTC 62

Query: 63  NYLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCV 121
           N+L+  L+S  SK FCDSN   +   S  D CEPCP NGEC+QGKL+C  GY+    LCV
Sbjct: 63  NFLSKSLSSNPSKSFCDSN--FNPIDSDLDICEPCPINGECYQGKLQCNLGYKNQRNLCV 120

Query: 122 EDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNP 181
           EDG+INE+  +L  + E ++C +YA   C GTG+IWV END+W +L  +  +    LD  
Sbjct: 121 EDGEINESTKKLVGYFERKVCESYAHNECYGTGTIWVPENDVWTELRSNSFLS--NLDES 178

Query: 182 VYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPV 241
            Y + K + +E V   LE RTNS G+ ELKCPE +A+ YKPL+CR+HQW+  H LII   
Sbjct: 179 AYNFLKGKAVEGVTELLEKRTNSNGIDELKCPESVAKSYKPLTCRLHQWILRHILIISSS 238

Query: 242 CSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSV-NGECEPWVVASRLR 300
           C++LVG  +L  ++ R++ F+ RVEELY QVC+ LEENA+ S S     CEPWV+AS LR
Sbjct: 239 CAMLVGSAMLRRRIQRKQCFSRRVEELYDQVCDFLEENAVASNSAETSNCEPWVIASWLR 298

Query: 301 DHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKG 360
           D+LLLP+ER+DP++W KVEEL++EDSR+D+Y KLLKGE KVVWEWQVEGSLS SK++K+ 
Sbjct: 299 DYLLLPRERRDPLLWTKVEELIKEDSRIDRYEKLLKGEKKVVWEWQVEGSLSLSKLKKQR 358

Query: 361 EASK 364
           E  K
Sbjct: 359 ETQK 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794583|ref|XP_002865176.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata] gi|297311011|gb|EFH41435.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/366 (49%), Positives = 241/366 (65%), Gaps = 21/366 (5%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCN 63
           S  +KRPK ++ +   +  SSSS    M EPPQS FPSK++  RL+ V+ +A  VA TCN
Sbjct: 3   SIPRKRPKSETRTPKRNPKSSSSPIRSMLEPPQSFFPSKEEFFRLLKVLLVACVVAFTCN 62

Query: 64  YLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           +LA  L+S  +K FCDSN   DS +S  D CEPCP NGEC QGKL+C  GY+K   LCVE
Sbjct: 63  FLAKSLSSNPTKSFCDSNY--DSIESDLDFCEPCPINGECCQGKLKCNLGYKKQRNLCVE 120

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DG+INE+  +L  + E ++C AYA   C GTG+IWV END+W +L  +  +    LD   
Sbjct: 121 DGEINESTKKLVGYFERKVCEAYAHNECYGTGAIWVPENDVWEELRSNSFLN--NLDESA 178

Query: 183 YLYTKKRTMETVGRYLESRTNSYG--MKELKCPELLAEHYKPLSCRIHQWVSTHALIIVP 240
           Y + K + +E V   LE RTNS G  ++ L  P                 +  H   +V 
Sbjct: 179 YNFLKGKAVEAVTELLEKRTNSNGRKLQTLDLPH------------ASMALEAHLNYLVR 226

Query: 241 VCS-LLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVN-GECEPWVVASR 298
           +C+ +LVG  +L  K+ R+RYF+ RVEELY QVC+ LEENA+ S S +   CEPWV+AS 
Sbjct: 227 MCNGILVGSAILRRKIQRKRYFSRRVEELYDQVCDFLEENAVASNSADTSNCEPWVIASW 286

Query: 299 LRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRK 358
           LRD+LLLP+ER+DP++W KVEEL++EDSR+DQYPK++KGE KVV+EWQVEGSLS SK++K
Sbjct: 287 LRDYLLLPRERRDPLLWTKVEELIKEDSRIDQYPKVVKGEQKVVYEWQVEGSLSLSKLKK 346

Query: 359 KGEASK 364
           + E  K
Sbjct: 347 QRETQK 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8885597|dbj|BAA97527.1| unnamed protein product [Arabidopsis thaliana]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 237/364 (65%), Gaps = 16/364 (4%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSS-WSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           S  +KRPK ++ +  +  SSSSSS    M EPPQSLFPSK +   L+ V+ +A +VA TC
Sbjct: 3   SIPRKRPKSETRTGRTPKSSSSSSPIRSMLEPPQSLFPSKGEFFTLLKVLLVACAVAFTC 62

Query: 63  NYLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCV 121
           N+L+  L+S  SK FCDSN   +   S  D CEPCP NGEC+QGKL+C  GY+    LCV
Sbjct: 63  NFLSKSLSSNPSKSFCDSNF--NPIDSDLDICEPCPINGECYQGKLQCNLGYKNQRNLCV 120

Query: 122 EDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNP 181
           EDG+INE+  +L  + E ++C +YA   C GTG+IWV END+W +L  +  +    LD  
Sbjct: 121 EDGEINESTKKLVGYFERKVCESYAHNECYGTGTIWVPENDVWTELRSNSFLS--NLDES 178

Query: 182 VYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPV 241
            Y + K + +E V   LE RTNS G K L+  +L        +   H        ++V  
Sbjct: 179 AYNFLKGKAVEGVTELLEKRTNSNGQK-LQTFDLSLASMDLAAYLNH--------LVVLC 229

Query: 242 CSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSV-NGECEPWVVASRLR 300
             +LVG  +L  ++ R++ F+ RVEELY QVC+ LEENA+ S S     CEPWV+AS LR
Sbjct: 230 NGILVGSAMLRRRIQRKQCFSRRVEELYDQVCDFLEENAVASNSAETSNCEPWVIASWLR 289

Query: 301 DHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKG 360
           D+LLLP+ER+DP++W KVEEL++EDSR+D+Y KLLKGE KVVWEWQVEGSLS SK++K+ 
Sbjct: 290 DYLLLPRERRDPLLWTKVEELIKEDSRIDRYEKLLKGEKKVVWEWQVEGSLSLSKLKKQR 349

Query: 361 EASK 364
           E  K
Sbjct: 350 ETQK 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2142310	387	AT5G46560 "AT5G46560" [Arabido	0.841	0.850	0.531	4.2e-95
UNIPROTKB|H0Y9B7	85	LEMD2 "LEM domain-containing p	0.163	0.752	0.323	0.0002
DICTYBASE|DDB_G0293138	942	DDB_G0293138 "Protein SRC1" [D	0.140	0.058	0.321	0.00062

TAIR|locus:2142310 AT5G46560 "AT5G46560" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 179/337 (53%), Positives = 232/337 (68%)

Query:    31 MTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNST-SKPFCDSNLLLDSP-QS 88
             M EPPQSLFPSK +   L+ V+ +A +VA TCN+L+  L+S  SK FCDSN    +P  S
Sbjct:    31 MLEPPQSLFPSKGEFFTLLKVLLVACAVAFTCNFLSKSLSSNPSKSFCDSNF---NPIDS 87

Query:    89 PTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQF 148
               D CEPCP NGEC+QGKL+C  GY+    LCVEDG+INE+  +L  + E ++C +YA  
Sbjct:    88 DLDICEPCPINGECYQGKLQCNLGYKNQRNLCVEDGEINESTKKLVGYFERKVCESYAHN 147

Query:   149 LCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMK 208
              C GTG+IWV END+W +L  +  +    LD   Y + K + +E V   LE RTNS G+ 
Sbjct:   148 ECYGTGTIWVPENDVWTELRSNSFLS--NLDESAYNFLKGKAVEGVTELLEKRTNSNGID 205

Query:   209 ELKCPELLAEHYKPLSCRIHQWVSTHALIIVPXXXXXXXXXXXXWKVHRRRYFAIRVEEL 268
             ELKCPE +A+ YKPL+CR+HQW+  H LII               ++ R++ F+ RVEEL
Sbjct:   206 ELKCPESVAKSYKPLTCRLHQWILRHILIISSSCAMLVGSAMLRRRIQRKQCFSRRVEEL 265

Query:   269 YHQVCEILEENALMSKSVN-GECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSR 327
             Y QVC+ LEENA+ S S     CEPWV+AS LRD+LLLP+ER+DP++W KVEEL++EDSR
Sbjct:   266 YDQVCDFLEENAVASNSAETSNCEPWVIASWLRDYLLLPRERRDPLLWTKVEELIKEDSR 325

Query:   328 VDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASK 364
             +D+Y KLLKGE KVVWEWQVEGSLS SK++K+ E  K
Sbjct:   326 IDRYEKLLKGEKKVVWEWQVEGSLSLSKLKKQRETQK 362

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|H0Y9B7 LEMD2 "LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query:   292 PWVVASRLRDHLLLPKERKDPVIWKK-VEELVQEDSRVDQYPKLLKGESKVVWEWQVEGS 350
             P+V    +RD L+ P+ R+   +W + VE L   +SR+      + GE  +VW W    S
Sbjct:    20 PYVGILHVRDSLIPPQSRRMKRVWDRAVEFLASNESRIQTESHRVAGEDMLVWRWTKPSS 79

Query:   351 LSSSK 355
              S S+
Sbjct:    80 FSDSE 84

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

DICTYBASE|DDB_G0293138 DDB_G0293138 "Protein SRC1" [Dictyostelium discoideum (taxid:44689)]

 Score = 84 (34.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query:   291 EPWVVASRLRDHLL-LPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEW 345
             +PW+    L+D ++    ++K  +IW+K  E +  + RV    KL+ GES+   EW
Sbjct:   857 DPWISELILKDEVMGSNNDKKSNLIWEKTLEKISSNVRVLCTVKLIHGESQKTLEW 912

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290149 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam09402	326	pfam09402, MSC, Man1-Src1p-C-terminal domain	3e-28

>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain

 Score =  112 bits (283), Expect = 3e-28
 Identities = 64/329 (19%), Positives = 113/329 (34%), Gaps = 70/329 (21%)

Query: 67  NFLNSTSKPFCDSNLLLDS-------PQSPTDSCEPCPSNGECHQG-KLECFHGYRK--- 115
                 +  FC S     S        +     C PCP N  C+ G KL+C  G++    
Sbjct: 14  YREQKIAVGFCGSGAPTYSLALTPSFLERLKPQCIPCPPNAICYPGLKLKCEPGFKLKPH 73

Query: 116 -------HGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLC-DGTGSIWVEENDIWNDL 167
                      C+ D +  E    L       L +  A+  C +   S  + EN+++   
Sbjct: 74  PLSLLGLIPPKCIPDTEKEELVSELVDKALEELRKRNAKHECGEDDLSPGISENELYE-- 131

Query: 168 EGHELMKIFELDNPVYLYTKKRTMETVGRY-----------LESRTNSYGMKELKCPELL 216
                           L  KK        +            E+       + +      
Sbjct: 132 ---------------LLSEKKSPWINEEEFEDLWKAAIKELKENPEVVIRPEPILSKNGD 176

Query: 217 AEH------------YKPLSCRI----HQWVSTHALIIVPVCSLLVGCLLL--LWKVHRR 258
                          Y PLSCR       ++  + L+++ +  LL+    +    K  R 
Sbjct: 177 GSTETQKTLRSSSLAYLPLSCRFRRFVRLFLKRYRLLLLGLIILLLVVFYIRYRIKKKRE 236

Query: 259 RYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKE--RKDPVIWK 316
                +VEEL  ++ + L++    S   +   EP++   +LRD LL  +   ++   +W+
Sbjct: 237 E--KAQVEELVKKIIDKLKQQKEASDE-DTSEEPYLPIPQLRDDLLRDEHRLKRRNRLWE 293

Query: 317 KVEELVQEDSRVDQYPKLLKGESKVVWEW 345
           KV   ++++S V    + + GE   VWEW
Sbjct: 294 KVVSKLEQNSNVRTRLREIHGEIMRVWEW 322

MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands. Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
PF09402	334	MSC: Man1-Src1p-C-terminal domain; InterPro: IPR01	100.0
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.51

>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2)

Probab=100.00  E-value=5e-62  Score=484.04  Aligned_cols=275  Identities=28%  Similarity=0.421  Sum_probs=71.2

Q ss_pred             CCCCCCCCCCCCCCC------------CCCCCCCCccCCCCceecCC-eeeeCCCceec-----------CCCcccChhh
Q 016344           71 STSKPFCDSNLLLDS------------PQSPTDSCEPCPSNGECHQG-KLECFHGYRKH-----------GKLCVEDGDI  126 (391)
Q Consensus        71 ~~~~~fCdS~~~~~~------------~~~~~p~C~PCP~hAiC~~g-~l~C~~gYvl~-----------~~~CV~D~~k  126 (391)
                      +...+|||++.+..+            ...++|+|+|||+||+|++| ++.|++||++.           +++|++|+++
T Consensus        18 ~~~vgyC~~~~~~~~~~~~~~~~~~~~~~~~~P~C~pCP~~a~C~~~~~~~C~~~y~~~~~~l~~~g~~p~~~Ci~D~~k   97 (334)
T PF09402_consen   18 KIAVGYCGTESPSPSFADDDISVPDWLLENFKPSCEPCPEHAICYPGLKLECEPGYVLKPSPLSLFGLIPPPKCIPDTEK   97 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence            468999999972111            14678999999999999999 99999999998           9999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccC---CCCcccchhhHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHHhhcccccc
Q 016344          127 NETAGRLSRWVENRLCRAYAQFLCDG---TGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTN  203 (391)
Q Consensus       127 ~~~i~~l~~~i~~~Lr~r~A~~~CG~---~~s~~i~e~dL~~~~~~~~~~k~~~ls~~~fe~l~~~al~~l~~~l~~~~~  203 (391)
                      ++.+.+|++++.++||++||+++||.   ..+.+|+++||++++.+   ++++++++++|+++|..|+..+.+.-+..+.
T Consensus        98 ~~~i~~l~~~~~~~Lr~~~a~~~Cg~~~~~~~~~ls~~el~~~~~~---~~~~~~~~~efe~l~~~a~~~L~~~~ei~~~  174 (334)
T PF09402_consen   98 EEKIEELAKKILDELRERNAQYECGDSEDDESPGLSEEELKDILSS---KKSPWISDEEFEELWSAALQELKKNPEIIIR  174 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcHHHHHHHHHh---ccCccccHHHHHHHHHHHHHHHHhCCcEEEe
Confidence            99999999999999999999999993   34678999999999998   7789999999999999999888744332222


Q ss_pred             ---------cCCceeeccccccccCccCccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016344          204 ---------SYGMKELKCPELLAEHYKPLSCRIHQW----VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYH  270 (391)
Q Consensus       204 ---------sn~~~~~k~~~s~S~~~i~l~Cr~r~~----i~~~~~~i~~~l~~~v~i~~l~~~~~r~~~e~~~v~~Lv~  270 (391)
                               .+.........+++++++||+|++++.    +.+++..++++++++++++++++++++++.++++|++||+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~s~s~~~lpl~C~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lv~  254 (334)
T PF09402_consen  175 DDIINSHSSDDSNEKDKYFRSSSLPYLPLKCRLRRQIRQFISRYRLIILGVLILLLLIKYIRYRYRKRREEKARVEELVK  254 (334)
T ss_dssp             -----------------------------------------------------------------STHHHHHTTTTTTHH
T ss_pred             cccccccccccccCCcEEEEeeCCCccccEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     001111122234689999999976555    4556666777766777777777778888899999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcccccccccccCCCCC--cCchhhHHHHHHHHhcCCCcceeeeEEcCceeeeeEEeec
Q 016344          271 QVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKE--RKDPVIWKKVEELVQEDSRVDQYPKLLKGESKVVWEWQVE  348 (391)
Q Consensus       271 ~vl~~L~~q~~~~~~~~~~~~pyl~~~qLRD~LL~~~~--r~r~~LW~kV~k~Ve~nSnVrt~~~ev~GE~~~vWEWig~  348 (391)
                      +|+++|++|+..+ ..+..++|||+++||||+||.+.+  +++++||++|+++||+|||||++++|+|||+|+||||||+
T Consensus       255 ~ii~~L~~~~~~~-~~~~~~~p~v~~~qLRD~ll~~~~~~~~~~~lW~~v~~~ve~ns~Vr~~~~e~~Ge~~~vWeWig~  333 (334)
T PF09402_consen  255 KIIDRLQDQARAS-DPNSSPEPYVSISQLRDDLLPPEHRLKRRNRLWKKVVKKVEENSNVRTEVREVHGEIMRVWEWIGP  333 (334)
T ss_dssp             HHHHHHHHHHHHH-TTSS-S-S-B-HHHHHHTT--STTGGG-GHHHHHHHHHHHTT---SEEEEEEETTEEEEEEE----
T ss_pred             HHHHHHHHHhhhh-ccCCCCCCCccHHHHHHHhCCcccCHHHHHHHHHHHHHHHHcCCCeeEEEEEECCeEEEEEEecCC
Confidence            9999999998843 344678999999999999998765  3379999999999999999999999999999999999997


Q ss_pred             C
Q 016344          349 G  349 (391)
Q Consensus       349 ~  349 (391)
                      +
T Consensus       334 ~  334 (334)
T PF09402_consen  334 N  334 (334)
T ss_dssp             -
T ss_pred             C
Confidence            5

Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.51  E-value=0.0054  Score=42.08  Aligned_cols=28  Identities=39%  Similarity=0.954  Sum_probs=20.2

Q ss_pred             ccCCCCceecCC----e-eeeCCCceecCCCcc
Q 016344           94 EPCPSNGECHQG----K-LECFHGYRKHGKLCV  121 (391)
Q Consensus        94 ~PCP~hAiC~~g----~-l~C~~gYvl~~~~CV  121 (391)
                      ++||+||-|+.+    + -.|..||.+.+.+|+
T Consensus         5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~~~C~   37 (37)
T PF12946_consen    5 TKCPANAGCFRYDDGSEECRCLLGYKKVGGKCV   37 (37)
T ss_dssp             S---TTEEEEEETTSEEEEEE-TTEEEETTEEE
T ss_pred             ccCCCCcccEEcCCCCEEEEeeCCccccCCCcC
Confidence            589999999864    3 399999999999886

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
2ch0_A	133	Inner nuclear membrane protein MAN1; winged helix	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens} Length = 133

 Score = 73.7 bits (180), Expect = 4e-16
 Identities = 19/116 (16%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 254 KVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPV 313
           +  +      ++ ++  ++ ++L  +    +  N + +P++    +RD L+ P +RK   
Sbjct: 6   RWTKEEEETRQMYDMVVKIIDVLRSHNEACQE-NKDLQPYMPIPHVRDSLIQPHDRKKMK 64

Query: 314 -IWKKVEELVQE-DSRVDQYPKLLKGESKVVWEWQVEGSLSSSKMRKKGEASKWRS 367
            +W +  + +   +SRV    + + G   +VW W      +S        +  W+ 
Sbjct: 65  KVWDRAVDFLAANESRVRTETRRIGGADFLVWRWI--QPSASCDKILVIPSKVWQG 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 51/390 (13%), Positives = 109/390 (27%), Gaps = 123/390 (31%)

Query: 30  WMT----EPPQSLFPSKQDLLRLIT-----VVAIASSVALTCNYLANFLNS--TSKPFCD 78
           W+       P+++    Q LL  I          +S++ L  + +   L     SKP+ +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 79  SNLLLDSPQSPT-----DSCEPCPSNGECHQGKLEC-------------FHGYRKHGKLC 120
             L+L + Q+       +               L C             F        + 
Sbjct: 246 CLLVLLNVQNAKAWNAFN---------------LSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 121 VEDGDIN----ETAGRLSRWVENR--------------LCRAYAQFLCDGTGSIWVEEND 162
           ++   +     E    L ++++ R                   A+ + DG  + W    D
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATW----D 345

Query: 163 IWNDLEGHELMKIFE-----LDNPVY--LYTK-----------KRTMETVGRYLESRTNS 204
            W  +   +L  I E     L+   Y  ++ +              +  +   +      
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 205 YGMKELKCPELLAEHYKPLSCRIH-----------QWVSTHALII----VPVCSLLVGCL 249
             + +L    L+ +  K  +  I               + H  I+    +P        +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 250 LLLWKVHRRRYFAIRVEELYH-QVCEILEENALMSK----------SVNGECEPWVVASR 298
                 +  +YF   +   +H +  E  E   L              +  +   W  +  
Sbjct: 466 ----PPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 299 LRDHLL-LPKERK-----DPVIWKKVEELV 322
           + + L  L   +      DP   + V  ++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2ch0_A	133	Inner nuclear membrane protein MAN1; winged helix	99.88
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	93.84
1ob1_C	99	Major merozoite surface protein; immune system, im	91.55
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	90.64

>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}

Probab=99.88  E-value=2e-23  Score=179.76  Aligned_cols=95  Identities=16%  Similarity=0.413  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccccCCCCCc-CchhhHHHHHHHHhcCCC-cceeee
Q 016344          256 HRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKER-KDPVIWKKVEELVQEDSR-VDQYPK  333 (391)
Q Consensus       256 ~r~~~e~~~v~~Lv~~vl~~L~~q~~~~~~~~~~~~pyl~~~qLRD~LL~~~~r-~r~~LW~kV~k~Ve~nSn-Vrt~~~  333 (391)
                      ++.+.++++|.+||++|+++|++|+..| .++++.+|||++.||||.||.++.+ ++.++|++|+++||+|+| ||++++
T Consensus         8 ~k~~ee~~~v~~LV~~Iid~L~~q~~~~-~e~~~~~p~l~i~hLRD~ll~~~~r~k~~~lW~kAvk~lE~NesRVRte~~   86 (133)
T 2ch0_A            8 TKEEEETRQMYDMVVKIIDVLRSHNEAC-QENKDLQPYMPIPHVRDSLIQPHDRKKMKKVWDRAVDFLAANESRVRTETR   86 (133)
T ss_dssp             STHHHHHTTTTTTHHHHHHHHHHHHHHH-TTSSCSCSCBCHHHHHHTTCCSTTGGGGHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCceehhhhHhhhcCccchHHHHHHHHHHHHHHHcccchhhhcce
Confidence            3456777889999999999999998876 3445678999999999999988765 559999999999998755 999999


Q ss_pred             EEcCceeeeeEEeecCCC
Q 016344          334 LLKGESKVVWEWQVEGSL  351 (391)
Q Consensus       334 ev~GE~~~vWEWig~~~~  351 (391)
                      +++||+|+||+|||+.+.
T Consensus        87 ~i~GE~~rvW~Wig~~~~  104 (133)
T 2ch0_A           87 RIGGADFLVWRWIQPSAS  104 (133)
T ss_dssp             EETTEEEEEEECCCCSSS
T ss_pred             eecCeEEEEEEecCCCCc
Confidence            999999999999998764

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=93.84  E-value=0.023  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             cCCCCceecCC----ee-eeCCCceecCCCcccChhh
Q 016344           95 PCPSNGECHQG----KL-ECFHGYRKHGKLCVEDGDI  126 (391)
Q Consensus        95 PCP~hAiC~~g----~l-~C~~gYvl~~~~CV~D~~k  126 (391)
                      -||+||.||..    +. +|-.||+..+.+||+|+..
T Consensus        11 kcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~   47 (95)
T 1b9w_A           11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNM   47 (95)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTC
T ss_pred             CCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCC
Confidence            69999999973    44 9999999999999999854

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=91.55  E-value=0.077  Score=43.18  Aligned_cols=31  Identities=32%  Similarity=0.912  Sum_probs=27.2

Q ss_pred             cCCCCceecC---C-ee-eeCCCceecCCCcccChh
Q 016344           95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDGD  125 (391)
Q Consensus        95 PCP~hAiC~~---g-~l-~C~~gYvl~~~~CV~D~~  125 (391)
                      -||+||.|+.   | +. .|.+||..-+..|+++..
T Consensus        11 ~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~   46 (99)
T 1ob1_C           11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPN   46 (99)
T ss_dssp             CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSC
T ss_pred             CCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCC
Confidence            6999999998   5 44 999999999999999863

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=90.64  E-value=0.11  Score=42.56  Aligned_cols=30  Identities=30%  Similarity=0.783  Sum_probs=26.5

Q ss_pred             cCCCCceecC---C-ee-eeCCCceecCCCcccCh
Q 016344           95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDG  124 (391)
Q Consensus        95 PCP~hAiC~~---g-~l-~C~~gYvl~~~~CV~D~  124 (391)
                      -||+||.|+.   | +. .|..||...+..|+++.
T Consensus        17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~N   51 (105)
T 1n1i_A           17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPAS   51 (105)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEECSSSEEECC
T ss_pred             CCCCCCCeEECCCCCEeEEEECCeeccCCEEEECC
Confidence            6999999987   4 45 99999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1ob1c1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	93.91
d1b9wa1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	92.87
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	91.92
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	80.05

>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.91  E-value=0.015  Score=38.31  Aligned_cols=30  Identities=33%  Similarity=0.926  Sum_probs=26.5

Q ss_pred             cCCCCceecCC-----eeeeCCCceecCCCcccCh
Q 016344           95 PCPSNGECHQG-----KLECFHGYRKHGKLCVEDG  124 (391)
Q Consensus        95 PCP~hAiC~~g-----~l~C~~gYvl~~~~CV~D~  124 (391)
                      -||+||-||.+     +-+|--||...+++||+.+
T Consensus        11 ~~P~NagCfRyldg~EEwrCLL~fKk~~~kCv~~p   45 (45)
T d1ob1c1          11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENP   45 (45)
T ss_dssp             CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECS
T ss_pred             CCCcCcceeEecCCCeeeeeeeeecccCCCcccCC
Confidence            69999999976     3599999999999999864

>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]

Probab=92.87  E-value=0.023  Score=37.42  Aligned_cols=30  Identities=20%  Similarity=0.509  Sum_probs=26.2

Q ss_pred             cCCCCceecCC-----eeeeCCCceecCCCcccCh
Q 016344           95 PCPSNGECHQG-----KLECFHGYRKHGKLCVEDG  124 (391)
Q Consensus        95 PCP~hAiC~~g-----~l~C~~gYvl~~~~CV~D~  124 (391)
                      -||+||-||.+     +-+|--||...+++||+.+
T Consensus        11 ~~P~NAgC~Ry~dg~EEwRClL~fK~~~~~CV~~p   45 (45)
T d1b9wa1          11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAP   45 (45)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECT
T ss_pred             CCCCCcceeEecCCCeeEEEEeeeeccCCEeccCC
Confidence            69999999965     3599999999999999864

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.92  E-value=0.037  Score=36.06  Aligned_cols=29  Identities=28%  Similarity=0.810  Sum_probs=25.3

Q ss_pred             cCCCCceecCC--ee--eeCCCceecCCCcccC
Q 016344           95 PCPSNGECHQG--KL--ECFHGYRKHGKLCVED  123 (391)
Q Consensus        95 PCP~hAiC~~g--~l--~C~~gYvl~~~~CV~D  123 (391)
                      .|.+||.|.+.  ..  .|.+||.--+..|++|
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C~~e   40 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE   40 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTEEECSSSEEET
T ss_pred             CCCCCCEeecCCCCeEeECCCCCcCCCCEeeCc
Confidence            68999999986  33  9999999999999986

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.35  Score=31.25  Aligned_cols=27  Identities=37%  Similarity=1.022  Sum_probs=21.9

Q ss_pred             cCCCCceecCC--ee--eeCCCceecCCCcccC
Q 016344           95 PCPSNGECHQG--KL--ECFHGYRKHGKLCVED  123 (391)
Q Consensus        95 PCP~hAiC~~g--~l--~C~~gYvl~~~~CV~D  123 (391)
                      ||..+|.|.+.  ..  .|.+||.  ++.|..|
T Consensus        12 pC~n~g~C~n~~g~y~C~C~~G~~--G~~Ce~d   42 (42)
T d2vj3a1          12 PCEHAGKCINTLGSFECQCLQGYT--GPRCEID   42 (42)
T ss_dssp             SSSTTCEEEECSSSEEEECCTTEE--STTSCEE
T ss_pred             CCCCCcEeECCCCCEEeECCCCCc--CCCCcCc
Confidence            99999999987  33  8999996  7777654