Query 016348
Match_columns 391
No_of_seqs 281 out of 1915
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 2.4E-06 8.1E-11 68.5 9.5 71 166-236 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 1.8E-06 6.3E-11 71.8 6.7 69 166-234 34-103 (137)
3 2i68_A Protein EMRE; transmemb 98.0 9.3E-06 3.2E-10 67.5 7.2 56 334-389 48-104 (137)
4 3b5d_A Multidrug transporter E 97.8 0.00011 3.7E-09 58.7 9.8 56 334-389 48-104 (110)
5 3tds_E Formate/nitrite transpo 7.8 1.1E+03 0.037 20.9 11.4 24 367-390 235-258 (268)
6 2l2t_A Receptor tyrosine-prote 7.3 3.2E+02 0.011 17.2 2.6 14 377-390 24-37 (44)
7 2ks1_B Epidermal growth factor 7.1 3.4E+02 0.011 17.1 2.6 12 378-389 26-37 (44)
8 2l9u_A Receptor tyrosine-prote 6.0 2.2E+02 0.0075 17.0 1.2 13 378-390 21-33 (40)
9 3arc_T Photosystem II reaction 4.0 5.5E+02 0.019 15.0 2.0 15 356-370 15-29 (32)
10 3kly_A Putative formate transp 3.9 5.8E+02 0.02 22.9 3.1 49 343-391 206-280 (280)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=2.4e-06 Score=68.48 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHH-HhhHHHHHHHHHHHHhcccCChhhHHHHHhhhhhheeeeecc
Q 016348 166 FPVAVAHTIGHVAATVSMSKVAVSFTHII-KSGEPAFSVLVSRFLLGETFPLPVYMSLVPIIGGCALAAVTE 236 (391)
Q Consensus 166 l~~~~~~~~~~~~~~~al~~~s~s~~~ii-~~~~Pv~t~lls~l~l~e~~~~~~~~~lll~~~Gv~l~~~~~ 236 (391)
+...+++.....+...+++++|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|+.++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455677888888999999999999998 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.23 E-value=1.8e-06 Score=71.78 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHH-HhhHHHHHHHHHHHHhcccCChhhHHHHHhhhhhheeeee
Q 016348 166 FPVAVAHTIGHVAATVSMSKVAVSFTHII-KSGEPAFSVLVSRFLLGETFPLPVYMSLVPIIGGCALAAV 234 (391)
Q Consensus 166 l~~~~~~~~~~~~~~~al~~~s~s~~~ii-~~~~Pv~t~lls~l~l~e~~~~~~~~~lll~~~Gv~l~~~ 234 (391)
+...+++.+..++.+.++++++++.+..+ ..+.|+++++++++++||++++.+++|++++++|+.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445567888899999999999999988 8999999999999999999999999999999999998854
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.04 E-value=9.3e-06 Score=67.51 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=40.0
Q ss_pred HHHhhccChhHHHHH-HHHHHHHHHHHHHHHhCCccchhhhHhHHHHHHHHHHHhhc
Q 016348 334 YMSLDEISPLTFSIG-NTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQA 389 (391)
Q Consensus 334 ~~~l~~~s~~t~si~-~~l~pv~~ii~g~l~fge~~t~~~~iG~~li~~Gv~ly~~~ 389 (391)
...+++.++.+.... ..+.|+++.++|+++|||++++.+++|++++++|+++.++.
T Consensus 48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 557899988877666 89999999999999999999999999999999999998754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.83 E-value=0.00011 Score=58.72 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=49.0
Q ss_pred HHHhhccChhHHHHH-HHHHHHHHHHHHHHHhCCccchhhhHhHHHHHHHHHHHhhc
Q 016348 334 YMSLDEISPLTFSIG-NTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQA 389 (391)
Q Consensus 334 ~~~l~~~s~~t~si~-~~l~pv~~ii~g~l~fge~~t~~~~iG~~li~~Gv~ly~~~ 389 (391)
...+++.+..+.... ..+.|+.+.+.|+++|||+++..+++|.+++++|+.+.+..
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 346788877777565 78999999999999999999999999999999999988764
No 5
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=7.84 E-value=1.1e+03 Score=20.86 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=17.3
Q ss_pred ccchhhhHhHHHHHHHHHHHhhcc
Q 016348 367 PVQPINALGAAIAILGTFLYSQAK 390 (391)
Q Consensus 367 ~~t~~~~iG~~li~~Gv~ly~~~k 390 (391)
+.+..|++|..+.+...+.|.+.|
T Consensus 235 pvtlGNiiGG~~fvgl~y~~~~~~ 258 (268)
T 3tds_E 235 AVTLGNIVGGALFMGLGTYILGKE 258 (268)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566778899887777777766554
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.34 E-value=3.2e+02 Score=17.25 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhcc
Q 016348 377 AIAILGTFLYSQAK 390 (391)
Q Consensus 377 ~li~~Gv~ly~~~k 390 (391)
+++..+.++|-+.|
T Consensus 24 ~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 24 VIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhh
Confidence 34444555555443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.06 E-value=3.4e+02 Score=17.15 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhc
Q 016348 378 IAILGTFLYSQA 389 (391)
Q Consensus 378 li~~Gv~ly~~~ 389 (391)
++..++++|-+.
T Consensus 26 ii~~~~~~~~RR 37 (44)
T 2ks1_B 26 VVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 344444555444
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=5.99 E-value=2.2e+02 Score=17.01 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhcc
Q 016348 378 IAILGTFLYSQAK 390 (391)
Q Consensus 378 li~~Gv~ly~~~k 390 (391)
+++.|.++|.+.+
T Consensus 21 ~~lg~tflywrgr 33 (40)
T 2l9u_A 21 MMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhCceeEEEccc
Confidence 5556788887654
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.04 E-value=5.5e+02 Score=15.02 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.2
Q ss_pred HHHHHHHHhCCccch
Q 016348 356 VIVSSIIIFHTPVQP 370 (391)
Q Consensus 356 ~ii~g~l~fge~~t~ 370 (391)
++++-.++|.|++..
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 344555677887764
No 10
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=3.92 E-value=5.8e+02 Score=22.86 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH-------------------------HHHhCC-ccchhhhHhHHHHHHHHHHHhhccC
Q 016348 343 LTFSIGNTMKRISVIVSS-------------------------IIIFHT-PVQPINALGAAIAILGTFLYSQAKQ 391 (391)
Q Consensus 343 ~t~si~~~l~pv~~ii~g-------------------------~l~fge-~~t~~~~iG~~li~~Gv~ly~~~k~ 391 (391)
.+|++.|...-..+++.+ ++.-+. +.+..|++|..+.+...++|.+.|.
T Consensus 206 fEH~VANm~~ip~gi~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~NlipvtlGNiiGG~~fvgl~y~~~~~~~ 280 (280)
T 3kly_A 206 FEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLKD 280 (280)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCHHHHHHHTCCGGGGTTCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred chHHHhhHHHHHHHHHhccccchHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Done!