Query 016348
Match_columns 391
No_of_seqs 281 out of 1915
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 12:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 13.6 85 0.0062 15.9 2.6 20 242-261 3-22 (27)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 8.0 1.3E+02 0.0098 16.3 2.3 16 373-388 10-26 (34)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 7E+02 0.051 19.7 6.6 53 165-221 5-57 (248)
4 d1q90g_ f.23.26.1 (G:) PetG su 2.9 3.5E+02 0.026 13.9 1.7 13 374-386 11-24 (30)
5 d1pv7a_ f.38.1.2 (A:) Lactose 2.4 1.2E+03 0.084 17.7 6.1 13 114-126 330-342 (417)
6 d2h5na1 a.287.1.2 (A:1-132) Hy 2.3 5.2E+02 0.038 17.3 2.5 34 216-253 83-116 (132)
7 d1ppjd2 f.23.11.1 (D:196-241) 1.7 5.8E+02 0.043 14.6 1.7 17 372-388 12-28 (46)
8 d1v54k_ f.23.5.1 (K:) Mitochon 1.6 4E+02 0.029 15.6 0.8 22 365-386 5-26 (49)
9 d2b5ua2 b.110.1.1 (A:84-315) C 1.3 2.7E+02 0.02 22.3 -0.7 18 49-66 195-212 (232)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 1.3 1.7E+03 0.13 16.2 6.0 27 158-184 123-149 (225)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.63 E-value=85 Score=15.89 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016348 242 IGFMGAMISNLAFVFRNIFS 261 (391)
Q Consensus 242 ~G~~~~l~s~l~~a~~~v~~ 261 (391)
+|.+.+-++.+.|+.|.-+-
T Consensus 3 lgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eeehHHHHHHHHHHHHHHhc
Confidence 68888888889998887643
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.98 E-value=1.3e+02 Score=16.27 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=10.9
Q ss_pred hHhHH-HHHHHHHHHhh
Q 016348 373 ALGAA-IAILGTFLYSQ 388 (391)
Q Consensus 373 ~iG~~-li~~Gv~ly~~ 388 (391)
+.|+. +.++|+++|..
T Consensus 10 v~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 10 VAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhheeeeeeee
Confidence 44555 67788888854
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=7e+02 Score=19.67 Aligned_cols=53 Identities=6% Similarity=-0.125 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHHHHHHhhHHHHHHHHHHHHhcccCChhhHHH
Q 016348 165 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYMS 221 (391)
Q Consensus 165 ~l~~~~~~~~~~~~~~~al~~~s~s~~~ii~~~~Pv~t~lls~l~l~e~~~~~~~~~ 221 (391)
++.+|++..+..++....+..-...++. ..-+.+.++.++++.+|.-..||+-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 4556666555555444444444433332 2234566677778888777777764
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.86 E-value=3.5e+02 Score=13.93 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=6.6
Q ss_pred HhHH-HHHHHHHHH
Q 016348 374 LGAA-IAILGTFLY 386 (391)
Q Consensus 374 iG~~-li~~Gv~ly 386 (391)
+|.+ +.++|++.-
T Consensus 11 lGlipiTl~Glfv~ 24 (30)
T d1q90g_ 11 LGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 3444 555565543
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.39 E-value=1.2e+03 Score=17.68 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.2
Q ss_pred HHHHHHHHHhcCC
Q 016348 114 FNIYNKKVLNAYP 126 (391)
Q Consensus 114 ~~~~nK~~l~~fp 126 (391)
....+-.+.+.+|
T Consensus 330 ~~~~~~~~~~~~~ 342 (417)
T d1pv7a_ 330 LVGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCC
Confidence 3344444455555
No 6
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.33 E-value=5.2e+02 Score=17.26 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred hhhHHHHHhhhhhheeeeeccccchHHHHHHHHHHHHH
Q 016348 216 LPVYMSLVPIIGGCALAAVTELNFNMIGFMGAMISNLA 253 (391)
Q Consensus 216 ~~~~~~lll~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~ 253 (391)
++++.+ ...||+++..+|.+.|-+. +|.+++.+|
T Consensus 83 rkkyva---sylgvimasdgdiddnela-lwtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDNELA-LWTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHHHHH-HHHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCccHhH-HHHHHHHHh
Confidence 445543 4568888888887776443 566666554
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.66 E-value=5.8e+02 Score=14.58 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=8.8
Q ss_pred hhHhHHHHHHHHHHHhh
Q 016348 372 NALGAAIAILGTFLYSQ 388 (391)
Q Consensus 372 ~~iG~~li~~Gv~ly~~ 388 (391)
..+.+..++.++..|..
T Consensus 12 Kv~~~l~~l~~l~yy~K 28 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555556555543
No 8
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.63 E-value=4e+02 Score=15.56 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=11.7
Q ss_pred CCccchhhhHhHHHHHHHHHHH
Q 016348 365 HTPVQPINALGAAIAILGTFLY 386 (391)
Q Consensus 365 ge~~t~~~~iG~~li~~Gv~ly 386 (391)
|++..-..++|.+..+.+++.|
T Consensus 5 HdKYGn~vL~~Ga~fc~avW~y 26 (49)
T d1v54k_ 5 HDKYGNAVLASGATFCVAVWVY 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcEEEecccchhhhhhhh
Confidence 4444444555666555555555
No 9
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=1.31 E-value=2.7e+02 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=14.1
Q ss_pred cccccceeeccccCcccc
Q 016348 49 SLSRPLHISNVSCFEPVR 66 (391)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~ 66 (391)
+..+|+++|-.+..|.+.
T Consensus 195 SGl~PvYVs~~~~l~s~~ 212 (232)
T d2b5ua2 195 SGHNAVYVSVSDVLSPDQ 212 (232)
T ss_dssp GCCCCEEEEEEECCCHHH
T ss_pred CCCCCEEEEecccCCHHH
Confidence 568999999888877755
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.31 E-value=1.7e+03 Score=16.23 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016348 158 DLEFWKTLFPVAVAHTIGHVAATVSMS 184 (391)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~al~ 184 (391)
+.+++-.+..+.+....+.......+.
T Consensus 123 ~~~d~~~L~ll~~i~~tG~~~~~~~~~ 149 (225)
T d1y5ic1 123 TGADILILSLLVIQCALGLLTIPFSAQ 149 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445544343333333344433333333
Done!