BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016349
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
Length = 288
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 7/217 (3%)
Query: 136 ARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSP-FTDILED 194
A P KP LV+ K++P + A LH +AH+E NAI+L D RF + L +
Sbjct: 58 AFPEKPLLVAPKDVPKRSFATEEGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGE 117
Query: 195 G--FFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVI 252
G F D+ VA +ES HF+ ++ L LG++YGD AH LW + ++ ++ R+A++
Sbjct: 118 GLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALV 177
Query: 253 PLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAP 312
P V EARGLDA P L +K+ D NI+ I +E+ HV +G HW+ ++ +K
Sbjct: 178 PRVLEARGLDATPVLQEKIAQRKDFAAVNILDIILRDEIGHVYIGNHWYHALSKKRGLDA 237
Query: 313 CSTFKDLLKEYDVEL-KGPFNYSARDEAGIPR---DW 345
F +LL +Y + + KG N AR +AG + DW
Sbjct: 238 MKCFTELLHKYRIVIFKGVINTDARIQAGFTQHELDW 274
>sp|B0TZT4|COQ7_FRAP2 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Francisella philomiragia subsp. philomiragia (strain
ATCC 25017) GN=coq7 PE=3 SV=1
Length = 211
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 202 HVADDESRHFAWCSQRLAELGFK 224
H AD+E H AWC++RL ELG K
Sbjct: 85 HAADEEYDHLAWCAERLEELGAK 107
>sp|A4XZC2|COQ7_PSEMY 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Pseudomonas mendocina (strain ymp) GN=coq7 PE=3 SV=1
Length = 215
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 202 HVADDESRHFAWCSQRLAELG 222
H AD+E H AWC QR+ ELG
Sbjct: 89 HAADEEIDHLAWCEQRIRELG 109
>sp|Q55460|CMPA_SYNY3 Bicarbonate-binding protein CmpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=cmpA PE=1 SV=1
Length = 452
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 136 ARPPKPKLVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDG 195
PP P S P+P+ +G ++ M+ A+++L I +V +P E G
Sbjct: 28 GNPPDPNAASTGTNPSPQAAG-DISPEMMPETANIKLGYI-----PIVEAAPLIIAQEKG 81
Query: 196 FFADFAHVADDESRHFAWCSQR 217
FFA + + S+ W S R
Sbjct: 82 FFAKYGMTGVEVSKQANWASAR 103
>sp|A6VZM4|COQ7_MARMS 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Marinomonas sp. (strain MWYL1) GN=coq7 PE=3 SV=1
Length = 210
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 199 DFAHVADDESRHFAWCSQRLAELGFK 224
+ H AD+E H WC QRL +LG K
Sbjct: 81 EMEHAADEEIDHLVWCEQRLYDLGSK 106
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 158 PLNAYMLHNLAHVELNAIDLAWDTVVRFSP---------FTDILEDGFFADFAHVADDES 208
P+ A +N+AH N IDLA R SP FT++L GF F HV D
Sbjct: 161 PVLATGDYNVAH---NEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVP 217
Query: 209 RHFAWCSQR 217
+ W +QR
Sbjct: 218 ERYTWWAQR 226
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 158 PLNAYMLHNLAHVELNAIDLAWDTVVRFSP---------FTDILEDGFFADFAHVADDES 208
P+ A +N+AH N IDLA R SP FT++L GF F HV D
Sbjct: 161 PVLATGDYNVAH---NEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVP 217
Query: 209 RHFAWCSQR 217
+ W +QR
Sbjct: 218 ERYTWWAQR 226
>sp|Q220S2|COQ7_RHOFD 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118) GN=coq7 PE=3 SV=1
Length = 210
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 194 DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAAR----L 249
+ A F + DE+ H AW QRL ELG + + + LW +A R +
Sbjct: 76 EALRAHFTKASADETNHLAWTQQRLDELGARPSLL---NPLWYGAAFGLGLLAGRLGDPI 132
Query: 250 AVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAH 293
++ +V+ ++A L+ DH + IVA++ D+EV H
Sbjct: 133 SLGFVVETENQVEAHLESHLSLLPANDHASRAIVAQMKDDEVRH 176
>sp|A1VJY7|COQ7_POLNA 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Polaromonas naphthalenivorans (strain CJ2) GN=coq7
PE=3 SV=1
Length = 209
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAA----RLAVIPLV 255
F + +E H AW RL ELG + + + LW VA+ RL++ +V
Sbjct: 81 FLKASQEEGDHLAWTKDRLDELGARPSLL---NPLWYAGAFGLGLVASRLGDRLSLGFVV 137
Query: 256 QEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAH 293
+ R ++A + + GDH + IVA++ D+E H
Sbjct: 138 ETERQVEAHLASHLERLPEGDHESRAIVAQMKDDEALH 175
>sp|Q4K507|COQ7_PSEF5 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=coq7 PE=3 SV=1
Length = 215
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 202 HVADDESRHFAWCSQRLAELG 222
H A++E H AWC QR+ +LG
Sbjct: 89 HAAEEEIDHLAWCEQRIRQLG 109
>sp|B1JE29|COQ7_PSEPW 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Pseudomonas putida (strain W619) GN=coq7 PE=3 SV=1
Length = 215
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 202 HVADDESRHFAWCSQRLAELG 222
H A++E H AWC QR+ +LG
Sbjct: 89 HAAEEEIDHLAWCEQRIRQLG 109
>sp|Q5P7T5|COQ7_AROAE 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Aromatoleum aromaticum (strain EbN1) GN=coq7 PE=3
SV=1
Length = 206
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 199 DFAHVADDESRHFAWCSQRLAELGFK 224
+ A +D+E+ H AW QR++ELG +
Sbjct: 77 ELARASDEETEHLAWTEQRISELGGR 102
>sp|A2SKI7|COQ7_METPP 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Methylibium petroleiphilum (strain PM1) GN=coq7 PE=3
SV=1
Length = 212
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 198 ADFAHVADDESRHFAWCSQRLAEL 221
A F H A +E+ H AW RLAEL
Sbjct: 82 AQFEHAAREETDHLAWTEARLAEL 105
>sp|Q6MML0|SYT_BDEBA Threonine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=thrS PE=3 SV=1
Length = 656
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 165 HNLAHVELNAIDLAWDTV-VRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGF 223
H+ AH+ AI W V V P ++++GF+ DF HF ++++E+
Sbjct: 79 HSCAHIMAQAIQDIWPEVKVTIGP---VIDNGFYYDFDSPFAFTEEHFEKIEKKMSEIVS 135
Query: 224 KYGDMPAHDVLW 235
K D+P H W
Sbjct: 136 K--DLPIHREDW 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,109,722
Number of Sequences: 539616
Number of extensions: 6806437
Number of successful extensions: 38252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 34874
Number of HSP's gapped (non-prelim): 1537
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)