Query 016349
Match_columns 391
No_of_seqs 153 out of 376
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2833 Uncharacterized protei 100.0 1.4E-91 3E-96 659.5 25.1 257 90-350 3-263 (268)
2 PF04305 DUF455: Protein of un 100.0 2.4E-91 5.1E-96 668.2 26.8 245 100-348 1-253 (253)
3 cd00657 Ferritin_like Ferritin 99.0 2.9E-09 6.3E-14 84.1 10.3 129 163-301 2-130 (130)
4 PF11583 AurF: P-aminobenzoate 97.6 0.00037 7.9E-09 67.8 10.0 177 161-343 80-269 (304)
5 cd01045 Ferritin_like_AB Uncha 97.5 0.0022 4.8E-08 53.1 12.2 118 169-296 8-134 (139)
6 cd01055 Nonheme_Ferritin nonhe 97.3 0.0046 9.9E-08 54.3 12.0 132 161-307 5-138 (156)
7 PRK13456 DNA protection protei 96.7 0.011 2.4E-07 55.7 9.5 91 198-305 55-162 (186)
8 cd00907 Bacterioferritin Bacte 96.6 0.16 3.5E-06 44.0 15.4 126 161-296 7-132 (153)
9 cd07910 MiaE MiaE tRNA-modifyi 96.4 0.06 1.3E-06 50.6 12.3 125 162-296 21-150 (180)
10 cd01051 Mn_catalase Manganese 96.4 0.11 2.4E-06 47.2 13.5 121 163-296 25-147 (156)
11 cd07908 Mn_catalase_like Manga 96.3 0.078 1.7E-06 46.8 11.8 125 159-295 13-148 (154)
12 cd01041 Rubrerythrin Rubreryth 96.3 0.043 9.4E-07 47.5 9.9 117 168-304 10-129 (134)
13 cd07911 RNRR2_Rv0233_like Ribo 96.2 0.015 3.2E-07 56.6 7.5 106 202-308 86-208 (280)
14 PRK10635 bacterioferritin; Pro 96.2 0.24 5.2E-06 45.1 14.8 126 161-302 8-139 (158)
15 PF00210 Ferritin: Ferritin-li 95.9 0.29 6.2E-06 40.8 12.8 135 163-306 3-141 (142)
16 PRK08326 ribonucleotide-diphos 95.8 0.056 1.2E-06 53.9 9.6 107 201-307 102-226 (311)
17 PF02915 Rubrerythrin: Rubrery 95.6 0.054 1.2E-06 44.9 7.5 118 168-296 7-132 (137)
18 cd01058 AAMH_B Aromatic and Al 95.4 0.53 1.1E-05 47.0 14.7 154 162-323 103-272 (304)
19 PF05138 PaaA_PaaC: Phenylacet 95.2 0.087 1.9E-06 51.6 8.4 98 200-306 52-161 (263)
20 TIGR02156 PA_CoA_Oxy1 phenylac 95.1 0.081 1.8E-06 52.9 8.0 98 200-306 59-165 (289)
21 PRK10304 ferritin; Provisional 94.9 0.45 9.6E-06 43.6 11.7 133 161-304 7-144 (165)
22 TIGR00754 bfr bacterioferritin 94.8 0.64 1.4E-05 41.3 12.2 129 161-302 8-139 (157)
23 COG2406 Protein distantly rela 94.7 0.42 9E-06 44.2 10.8 134 161-318 19-169 (172)
24 cd01042 DMQH Demethoxyubiquino 94.5 0.23 5E-06 45.9 8.9 114 171-297 12-134 (165)
25 cd01052 DPSL DPS-like protein, 94.5 1 2.3E-05 38.8 12.5 128 161-295 8-142 (148)
26 PRK13778 paaA phenylacetate-Co 94.5 0.13 2.9E-06 51.9 7.9 100 200-306 77-183 (314)
27 PF13668 Ferritin_2: Ferritin- 94.5 0.36 7.8E-06 41.6 9.5 123 163-295 5-129 (137)
28 cd01049 RNRR2 Ribonucleotide R 94.4 0.29 6.2E-06 47.2 9.7 148 155-308 40-208 (288)
29 TIGR02158 PA_CoA_Oxy3 phenylac 94.3 0.32 6.9E-06 47.4 9.6 99 200-307 28-136 (237)
30 cd01044 Ferritin_CCC1_N Ferrit 93.9 1.5 3.3E-05 37.6 12.2 57 164-226 3-59 (125)
31 cd01057 AAMH_A Aromatic and Al 93.9 1.2 2.6E-05 47.3 13.8 137 163-306 82-232 (465)
32 cd01056 Euk_Ferritin eukaryoti 93.8 1.2 2.7E-05 39.8 11.9 135 161-304 5-143 (161)
33 cd01046 Rubrerythrin_like rubr 93.2 1.7 3.6E-05 37.6 11.3 106 164-295 6-113 (123)
34 PF00268 Ribonuc_red_sm: Ribon 92.0 1.2 2.5E-05 43.3 9.7 143 155-307 48-211 (281)
35 PRK07209 ribonucleotide-diphos 91.9 0.76 1.6E-05 47.0 8.6 140 155-307 91-265 (369)
36 PF02332 Phenol_Hydrox: Methan 90.9 7.6 0.00016 37.2 13.9 140 161-307 76-230 (233)
37 COG4445 MiaE Hydroxylase for s 89.8 7.4 0.00016 36.9 12.3 121 166-300 35-161 (203)
38 PRK09614 nrdF ribonucleotide-d 89.7 2 4.4E-05 42.7 9.1 145 154-309 50-217 (324)
39 COG1633 Uncharacterized conser 89.3 5.8 0.00012 37.0 11.3 125 169-303 34-168 (176)
40 PF03232 COQ7: Ubiquinone bios 88.1 6.5 0.00014 36.6 10.7 118 171-297 14-140 (172)
41 PF06175 MiaE: tRNA-(MS[2]IO[6 87.3 0.84 1.8E-05 44.8 4.6 98 194-296 100-201 (240)
42 cd01050 Acyl_ACP_Desat Acyl AC 86.0 8.5 0.00018 38.8 11.0 145 201-350 100-257 (297)
43 cd01043 DPS DPS protein, ferri 85.5 5.4 0.00012 34.4 8.3 86 200-294 36-132 (139)
44 PTZ00211 ribonucleoside-diphos 85.5 7 0.00015 39.3 10.2 143 155-307 61-224 (330)
45 PLN02492 ribonucleoside-diphos 80.3 25 0.00053 35.3 11.7 143 154-306 49-212 (324)
46 PRK13967 nrdF1 ribonucleotide- 79.0 9.6 0.00021 38.4 8.3 98 201-304 95-210 (322)
47 PRK13965 ribonucleotide-diphos 77.8 15 0.00032 37.3 9.3 101 201-306 108-224 (335)
48 PRK12759 bifunctional gluaredo 77.0 10 0.00022 39.4 8.1 106 202-308 184-300 (410)
49 cd00904 Ferritin Ferritin iron 76.9 34 0.00073 30.7 10.5 126 161-295 5-134 (160)
50 COG3396 Uncharacterized conser 75.6 25 0.00054 35.3 9.9 96 200-307 54-162 (265)
51 PLN00179 acyl- [acyl-carrier p 74.6 21 0.00045 37.6 9.5 99 203-322 164-286 (390)
52 COG0208 NrdF Ribonucleotide re 72.7 63 0.0014 33.5 12.4 104 200-307 109-238 (348)
53 COG2941 CAT5 Ubiquinone biosyn 67.5 98 0.0021 30.0 11.5 110 171-296 53-173 (204)
54 PF03405 FA_desaturase_2: Fatt 66.3 70 0.0015 33.0 11.1 118 202-323 106-231 (330)
55 PRK13966 nrdF2 ribonucleotide- 63.9 63 0.0014 32.7 10.2 98 202-304 98-211 (324)
56 COG2193 Bfr Bacterioferritin ( 63.9 1.3E+02 0.0028 28.2 13.0 121 159-294 6-131 (157)
57 cd01048 Ferritin_like_AB2 Unch 62.5 60 0.0013 28.5 8.7 113 169-297 10-131 (135)
58 PF11266 DUF3066: Protein of u 60.9 1.2E+02 0.0026 29.4 10.8 104 194-304 37-148 (219)
59 cd01045 Ferritin_like_AB Uncha 57.4 51 0.0011 27.0 7.0 39 267-309 17-55 (139)
60 COG1592 Rubrerythrin [Energy p 52.5 45 0.00098 31.2 6.4 80 200-296 42-121 (166)
61 PRK12775 putative trifunctiona 50.8 46 0.001 38.7 7.5 115 169-296 870-990 (1006)
62 cd01048 Ferritin_like_AB2 Unch 49.5 9 0.0002 33.7 1.3 101 255-375 10-122 (135)
63 PF07410 Phage_Gp111: Streptoc 48.6 58 0.0012 28.5 6.0 49 173-226 3-58 (106)
64 PF12902 Ferritin-like: Ferrit 48.1 78 0.0017 30.6 7.6 57 165-224 2-58 (227)
65 PF13224 DUF4032: Domain of un 44.4 22 0.00047 33.4 3.0 103 206-322 16-138 (165)
66 PRK14983 aldehyde decarbonylas 44.1 63 0.0014 31.6 6.1 103 195-304 48-158 (231)
67 PRK09101 nrdB ribonucleotide-d 43.2 1.2E+02 0.0027 31.3 8.6 99 201-306 110-255 (376)
68 PF13794 MiaE_2: tRNA-(MS[2]IO 42.1 96 0.0021 29.6 7.0 134 161-307 8-145 (185)
69 cd00657 Ferritin_like Ferritin 38.9 1.8E+02 0.0039 22.3 7.5 62 274-340 24-85 (130)
70 PF09537 DUF2383: Domain of un 38.3 2.1E+02 0.0046 23.6 7.9 75 162-245 4-78 (111)
71 PF13668 Ferritin_2: Ferritin- 36.4 94 0.002 26.6 5.6 52 163-220 86-137 (137)
72 PRK09448 DNA starvation/statio 33.1 2E+02 0.0043 26.2 7.4 28 197-224 57-84 (162)
73 cd07908 Mn_catalase_like Manga 33.1 1E+02 0.0023 27.0 5.5 36 274-313 44-79 (154)
74 smart00674 CENPB Putative DNA- 32.2 75 0.0016 23.9 3.9 46 256-311 18-63 (66)
75 cd01050 Acyl_ACP_Desat Acyl AC 30.6 44 0.00096 33.8 3.0 22 200-221 184-205 (297)
76 TIGR03225 benzo_boxB benzoyl-C 27.7 4.2E+02 0.009 28.6 9.4 97 199-308 141-261 (471)
77 cd04401 RhoGAP_fMSB1 RhoGAP_fM 27.5 3.4E+02 0.0074 26.0 8.2 24 360-383 123-146 (198)
78 COG4389 Site-specific recombin 24.6 2E+02 0.0043 31.7 6.6 116 232-350 9-149 (677)
79 cd01041 Rubrerythrin Rubreryth 24.3 84 0.0018 27.1 3.3 57 160-222 75-134 (134)
80 COG1528 Ftn Ferritin-like prot 24.1 6.2E+02 0.013 23.9 13.2 105 161-284 7-121 (167)
81 PF03221 HTH_Tnp_Tc5: Tc5 tran 22.6 67 0.0014 23.8 2.0 47 257-310 16-62 (66)
82 COG3657 Uncharacterized protei 21.2 1.9E+02 0.004 25.3 4.6 44 193-237 8-53 (100)
83 TIGR02029 AcsF magnesium-proto 20.9 72 0.0016 33.0 2.4 59 168-230 82-142 (337)
84 CHL00185 ycf59 magnesium-proto 20.8 74 0.0016 33.1 2.5 59 169-231 89-149 (351)
85 cd01047 ACSF Aerobic Cyclase S 20.6 74 0.0016 32.8 2.4 52 169-224 73-124 (323)
86 PRK13654 magnesium-protoporphy 20.4 76 0.0016 33.1 2.5 58 169-230 93-152 (355)
87 PLN02673 quinolinate synthetas 20.2 3.6E+02 0.0078 30.9 7.7 32 86-117 79-110 (724)
88 PF14518 Haem_oxygenas_2: Iron 20.2 1.2E+02 0.0026 24.8 3.2 20 207-226 15-34 (106)
No 1
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.4e-91 Score=659.50 Aligned_cols=257 Identities=39% Similarity=0.677 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCCC---CCCCCCCCCCCCCCccccCCCCCCCCCCCchhhHHHHHH
Q 016349 90 SSLAELGSLVLSTSDPLSKSKLSHLAFSRWRILNLPIG---VSVPPSRPARPPKPKLVSAKEIPAPKNSGLPLNAYMLHN 166 (391)
Q Consensus 90 ~sL~~~A~~vL~t~dp~~K~~lt~~~~~~w~~g~l~~~---~~~~p~~P~RP~kp~Lv~P~~vPrrk~~~~~~ra~lLHa 166 (391)
++|...+..+|.++||++|++++++-+..|......+. ....+.+||||++|.||+|++||+|...+..|++++||+
T Consensus 3 ~~l~~~~~~al~~~d~~~K~~l~~e~a~~~~~~~~~~~~p~~~~~~~~~grp~kp~Lv~P~~v~rr~l~t~~g~aallHA 82 (268)
T COG2833 3 KSLRGEAEEALYEADPDEKTRLAQENARRWFQSALSARSPEDPPIFERPGRPAKPVLVPPTQVPRRSLNTTHGRAALLHA 82 (268)
T ss_pred hhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCeecCcccCCcccccchhHHHHHHHH
Confidence 58999999999999999999999555555543333222 223357999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHH
Q 016349 167 LAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVA 246 (391)
Q Consensus 167 iAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dll 246 (391)
||||||||||||+|++|||.+ +|.+||+||++||.||++||+|+++||++||++|||||+|+|||+|+++|.+|+.
T Consensus 83 iAHIEfNAInLaLDa~~RF~~----~p~~F~~dWm~VA~EE~~HF~Ll~~~L~~LG~~YGDfpaHdgLw~~a~~T~~dl~ 158 (268)
T COG2833 83 IAHIEFNAINLALDAVYRFAP----LPLQFYDDWMRVADEEAKHFRLLRERLKSLGYDYGDFPAHDGLWQMAEATANDLL 158 (268)
T ss_pred HHHHhhhhHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcccccHHHHHHHhhcCHH
Confidence 999999999999999999984 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchHHHHHHHHhc-CC
Q 016349 247 ARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEY-DV 325 (391)
Q Consensus 247 aRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~tf~~lv~~~-~~ 325 (391)
+|||||||||||||||+||.+++|+++.||.++++||+|||+||||||++|++||+++|+++|+||..+|++|++.| .+
T Consensus 159 ~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp~~~FreL~r~y~~~ 238 (268)
T COG2833 159 ARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDPAATFRELVRAYFRF 238 (268)
T ss_pred HHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCChHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred CCCCCCCHHHHHhcCCCcccccchh
Q 016349 326 ELKGPFNYSARDEAGIPRDWYDPSA 350 (391)
Q Consensus 326 ~lk~PFN~eAR~~AGfs~~~y~~L~ 350 (391)
.+|||||.+||.+||||+.+|+.+.
T Consensus 239 ~lkg~~N~~AR~~AGfT~~e~d~i~ 263 (268)
T COG2833 239 ILKGPFNIDARAKAGFTQSEYDSIE 263 (268)
T ss_pred ccCCcccHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999988876
No 2
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=100.00 E-value=2.4e-91 Score=668.19 Aligned_cols=245 Identities=42% Similarity=0.753 Sum_probs=233.8
Q ss_pred HcCCCHHHHHHHHHHHHHHHhhCCCCCCC-----CCCCCCCCCCCCCccccCCCCCCC-CCCCchhhHHHHHHHHHHHHH
Q 016349 100 LSTSDPLSKSKLSHLAFSRWRILNLPIGV-----SVPPSRPARPPKPKLVSAKEIPAP-KNSGLPLNAYMLHNLAHVELN 173 (391)
Q Consensus 100 L~t~dp~~K~~lt~~~~~~w~~g~l~~~~-----~~~p~~P~RP~kp~Lv~P~~vPrr-k~~~~~~ra~lLHaiAHIEln 173 (391)
|.++||++|+.+|+++++.|++|.+.++. ..+|..|+||++|+||+|++||++ +.++..+|++|||+|||||||
T Consensus 1 L~~~dp~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~rp~~~~lv~p~~~p~r~~~~~~~~r~~llHaiAhIE~~ 80 (253)
T PF04305_consen 1 LNTPDPEEKVALTRELAEKWRAGELQIDDDPPGPAPPPERPGRPEKPELVPPRDVPRRGKLGTPEGRAALLHAIAHIELN 80 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCeecChhhcCCCCCCCChhhHHHHHHHhcchHHH
Confidence 78999999999999999999999987642 234789999999999999999999 556667899999999999999
Q ss_pred HHHHHHHHhhhc-CCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhc
Q 016349 174 AIDLAWDTVVRF-SPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVI 252 (391)
Q Consensus 174 AIDLAwD~v~RF-~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvV 252 (391)
|||||||++||| + +||.+||.||++||.||+|||+||.+||++||++|||||||+|||++|++|++||++|||||
T Consensus 81 AIdLa~Da~~RF~~----~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~dl~~R~A~v 156 (253)
T PF04305_consen 81 AIDLALDAIYRFHP----NLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAHDLLARMALV 156 (253)
T ss_pred HHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhccCHHHHHHHH
Confidence 999999999999 5 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchHHHHHHHHhc-CCCCCCCC
Q 016349 253 PLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEY-DVELKGPF 331 (391)
Q Consensus 253 p~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~tf~~lv~~~-~~~lk~PF 331 (391)
|||+||||||+||.+++||+++||.++++||++||+|||+||++|+|||+|+|+++|.||.++|+++|+.| .+.+|+||
T Consensus 157 p~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv~~~~~~~~k~pf 236 (253)
T PF04305_consen 157 PRVLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELVRQYFRGKLKGPF 236 (253)
T ss_pred HHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 67899999
Q ss_pred CHHHHHhcCCCcccccc
Q 016349 332 NYSARDEAGIPRDWYDP 348 (391)
Q Consensus 332 N~eAR~~AGfs~~~y~~ 348 (391)
|.+||++||||++||+.
T Consensus 237 N~eaR~~AGfs~~~~~~ 253 (253)
T PF04305_consen 237 NEEARLKAGFSEEEYED 253 (253)
T ss_pred CHHHHHHcCCCHHHhcC
Confidence 99999999999999974
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.02 E-value=2.9e-09 Score=84.10 Aligned_cols=129 Identities=27% Similarity=0.240 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhh
Q 016349 163 MLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSS 242 (391)
Q Consensus 163 lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~ 242 (391)
.|-.+..+|+.|++.....+.++. ..+...-|.+.+.||.+|+.++.+++..+|......+.....+.......
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~------~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 75 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP------DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTS 75 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCc
Confidence 355667799999999888888775 35677888999999999999999999999988776654433444444555
Q ss_pred hcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHH
Q 016349 243 DNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWF 301 (391)
Q Consensus 243 ~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF 301 (391)
.++...+... ...|..+++.-..+.+++. |..+.+++..|..||..|+..+.+|+
T Consensus 76 ~~~~~~l~~~-~~~E~~~~~~y~~~~~~~~---d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 76 DDPAEALRAA-LEVEARAIAAYRELIEQAD---DPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred cCHHHHHHHH-HHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6777777666 7999999887777776654 99999999999999999999999885
No 4
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.61 E-value=0.00037 Score=67.81 Aligned_cols=177 Identities=16% Similarity=0.064 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCC-----CCCccchhhH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKY-----GDMPAHDVLW 235 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~Y-----GDlPaH~gLW 235 (391)
+..+.-..|+|...++.+...++|..-. ...+.+.+...++...||++|..|..+-++..|-.+ ...+.-..+=
T Consensus 80 ~~~~~~~i~~E~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (304)
T PF11583_consen 80 ANYLSQGIWFEQGLVNPAFRMLARDRFP-SDPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLL 158 (304)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTT-ST-TTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHH
Confidence 4455566788999998887777764421 235788999999999999999999999999999222 2222222211
Q ss_pred HHHHhhhhc---HHHHHhhchhhHhhcCCCCCHHHHHHHHhCCC--hhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCC
Q 016349 236 NQCKKSSDN---VAARLAVIPLVQEARGLDAGPRLTQKLIGFGD--HRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKR 310 (391)
Q Consensus 236 e~a~~T~~d---llaRlAvVp~vlEARGLDvtP~~i~kl~~~GD--~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~ 310 (391)
....+.... .+..++.+ ++.|.- +| .+...+..-++ .-...|+++...||..|+++|...++..-.+.+-
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~-lv~Ee~-i~---~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 159 RRLARLLPPWERGLLFFAFA-LVAEEI-ID---AYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp HHHHTS-SHHHHHHHHHHHH-HHHHHS-BH---HHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred HHHHHhcccccchHHHHHHH-HHHHHH-HH---HHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 112221111 12233333 566654 33 34444444332 2346788999999999999999999999887653
Q ss_pred CchHHHHHHHHhc-CCCCCCCCCHHHHHhc--CCCc
Q 016349 311 APCSTFKDLLKEY-DVELKGPFNYSARDEA--GIPR 343 (391)
Q Consensus 311 dp~~tf~~lv~~~-~~~lk~PFN~eAR~~A--Gfs~ 343 (391)
..-..+..++... ......-+|...=..+ |+++
T Consensus 234 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~ 269 (304)
T PF11583_consen 234 AERRALAELLPEAIRAFVASLINPWVYILAGLGLDP 269 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHB--THHHHHHHHHCT-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhhcCCCh
Confidence 2223333444332 1112233444433334 6664
No 5
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=97.52 E-value=0.0022 Score=53.10 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCC-CCCCCccchhhHHHHH--------
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGF-KYGDMPAHDVLWNQCK-------- 239 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~-~YGDlPaH~gLWe~a~-------- 239 (391)
-+|..|++.......++.+ | ..-.=|.+.|.||.+|..++.+++.++|. ...+++.-...+....
T Consensus 8 ~~E~~~~~~Y~~~a~~~~~-----~-~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (139)
T cd01045 8 KMEEEAAEFYLELAEKAKD-----P-ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKAL 81 (139)
T ss_pred HHHHHHHHHHHHHHhHCCC-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHH
Confidence 4688888888877777754 2 34444566899999999999999999972 2222322222222111
Q ss_pred hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 240 KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 240 ~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
....++. .+--+.+.+|..+.. .+.+-.....|....+++..|..||..|+..
T Consensus 82 ~~~~~~~-~~l~~a~~~E~~~~~---~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~ 134 (139)
T cd01045 82 ESLMDPL-EALRLAIEIEKDAIE---FYEELAEKAEDPEVKKLFEELAEEERGHLRL 134 (139)
T ss_pred HhccCHH-HHHHHHHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1222322 233455678888875 4444455678889999999999999999863
No 6
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.30 E-value=0.0046 Score=54.26 Aligned_cols=132 Identities=18% Similarity=0.131 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCC--CCCccchhhHHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKY--GDMPAHDVLWNQC 238 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~Y--GDlPaH~gLWe~a 238 (391)
...|-...+.|+.|+...+-...-|... ++| .|=.=|-+.|.||..|...+.++|..+|... ..+|.-..-|.
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~~~~--~~~-~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~-- 79 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWFDSK--GLD-GFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFE-- 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCh-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccC--
Confidence 4567777788999999877666666642 455 4555555689999999999999999999553 33332111221
Q ss_pred HhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 239 KKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 239 ~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
++.. +--.-+-+|..-.+.-+.+++.-...||..++..++-|+.||+.|+ +||..++..
T Consensus 80 -----~~~~-~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~----~~~~~~l~~ 138 (156)
T cd01055 80 -----SLLE-VFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEE----ALARDILDK 138 (156)
T ss_pred -----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 2211 1112233444444455567777778899999999999999999999 788777664
No 7
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.70 E-value=0.011 Score=55.71 Aligned_cols=91 Identities=25% Similarity=0.258 Sum_probs=58.8
Q ss_pred HHHHHHHH-HHHhhHHHHHHHHHHhCCC---------------CCCCccch-hhHHHHHhhhhcHHHHHhhchhhHhhcC
Q 016349 198 ADFAHVAD-DESRHFAWCSQRLAELGFK---------------YGDMPAHD-VLWNQCKKSSDNVAARLAVIPLVQEARG 260 (391)
Q Consensus 198 ~Dwl~VA~-DEarHF~Ll~~RL~eLG~~---------------YGDlPaH~-gLWe~a~~T~~dllaRlAvVp~vlEARG 260 (391)
..+++.+. ||.+||.+|.+|+.+||.. |-++|... .+=++.+. +=...|.||-.
T Consensus 55 ~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d~tdv~~mL~~--~L~AEr~AI~~------- 125 (186)
T PRK13456 55 KEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACPDAYLPENPTDPKEILKV--LLEAERCAIRT------- 125 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCCcchHHHHHHH--HHHHHHHHHHH-------
Confidence 35555555 9999999999999999964 33444432 23333322 22344555544
Q ss_pred CCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHH
Q 016349 261 LDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVC 305 (391)
Q Consensus 261 LDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC 305 (391)
=-.+++-.. -.|..+-+++..|+.||+.|- .||.-+-
T Consensus 126 ---Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~----~dl~~lL 162 (186)
T PRK13456 126 ---YTEICDMTA-GKDPRTYDLALAILQEEIEHE----AWFSELL 162 (186)
T ss_pred ---HHHHHHHHh-cCCccHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 333555554 347788899888999999996 4666553
No 8
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.58 E-value=0.16 Score=44.04 Aligned_cols=126 Identities=16% Similarity=0.085 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHh
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKK 240 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~ 240 (391)
+..|=..-..|+.|+....-..+-|.+. + -.++..=|..+|.||-+|+..+.+|+.++|...---+.-. ..
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~--~-~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~-----~~- 77 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARMLEDW--G-LEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGK-----LR- 77 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCC-----CC-
Confidence 3455555577999998866555556431 1 2234444556999999999999999999996531111000 00
Q ss_pred hhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 241 SSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 241 T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
...++..=|..+ +-.|.--.+.=..+++.-...+|..++++|+.|..||..|...
T Consensus 78 ~~~~~~~~l~~~-l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~ 132 (153)
T cd00907 78 IGEDVPEMLEND-LALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDW 132 (153)
T ss_pred cCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 011221111110 1223322222333444455689999999999999999999854
No 9
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=96.42 E-value=0.06 Score=50.62 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccc---hhhHHHH
Q 016349 162 YMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAH---DVLWNQC 238 (391)
Q Consensus 162 ~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH---~gLWe~a 238 (391)
.+|=.=||-|.=|--.|+-.+.||++ -.+-......+|.||-.||.++.+-|.+-|+.||.+..- ++|-+.+
T Consensus 21 ~iL~DHA~CE~KAA~~A~~L~~rY~~-----~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~v 95 (180)
T cd07910 21 EILIDHAHCEKKAASSAMSLIFRYPE-----KPELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-----cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence 34445578899998888889999986 356788889999999999999999999999999998876 5666655
Q ss_pred Hhhh-hcHHHHHhhchhhHhhcCCCCCHHHHHHHHhC-CChhHHHHHHHHHHhHhhhHhh
Q 016349 239 KKSS-DNVAARLAVIPLVQEARGLDAGPRLTQKLIGF-GDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 239 ~~T~-~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~-GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
.+.. +-+++||-|-. ..|||+.. -...|... -|.+-++--.-++.-|-+|...
T Consensus 96 R~~~p~~llD~Llv~a-lIEARScE----RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~ 150 (180)
T cd07910 96 RKGEPERLLDRLLVAA-LIEARSCE----RFALLAPALPDPELKKFYRGLLESEARHYEL 150 (180)
T ss_pred ccCChHHHHHHHHHHH-HHHHHhHH----HHHHHhccCCCHHHHHHHHHHHHHHhhHHHH
Confidence 5432 34677775554 67999875 23333344 5777777777788899999653
No 10
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.36 E-value=0.11 Score=47.19 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=79.7
Q ss_pred HHHHHH--HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHh
Q 016349 163 MLHNLA--HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKK 240 (391)
Q Consensus 163 lLHaiA--HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~ 240 (391)
++=.++ .=|+.||--.+=-.+.+. ...++.+=+..+|.||-.|+.|+.+++..||.+=+..|-..+--.
T Consensus 25 l~~~~gG~~gEl~ai~qYl~q~~~~~-----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv~---- 95 (156)
T cd01051 25 LQEQLGGAFGELSAAMQYLFQSFNFR-----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQ---- 95 (156)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcccC----
Confidence 444455 358999877664433331 256788889999999999999999999999976555663222111
Q ss_pred hhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 241 SSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 241 T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
...|+.+=|- --+..|..... .+.+.++...|....++|..|..||+.|...
T Consensus 96 ~~~d~~~~L~-~ni~aE~~Ai~---~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~ 147 (156)
T cd01051 96 SSGNLVADLR-SNIAAESRARL---TYERLYEMTDDPGVKDTLSFLLVREIVHQNA 147 (156)
T ss_pred CCCCHHHHHH-HHHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1123222221 22334444433 3555555677999999999999999999865
No 11
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.28 E-value=0.078 Score=46.78 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=78.2
Q ss_pred hhHHHHHHHH---HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhH
Q 016349 159 LNAYMLHNLA---HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLW 235 (391)
Q Consensus 159 ~ra~lLHaiA---HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLW 235 (391)
.-+.+|-..- +.|+.||.-.+=..+.... --.+...=+.+.|.||.+|..++.+++..||.. |.....+
T Consensus 13 ~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~----~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~----p~~~~~~ 84 (154)
T cd07908 13 RYAELLLDDYAGTNSELTAISQYIYQHLISEE----KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGD----PRYRSSS 84 (154)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----Ccchhhc
Confidence 3466665544 4799999875422222221 123556667789999999999999999999843 2211111
Q ss_pred H-------H-HHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHh
Q 016349 236 N-------Q-CKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVA 295 (391)
Q Consensus 236 e-------~-a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa 295 (391)
. . ......|+.. +--.-+..|..+++.=-.+++ ..+|..+.++|+.|..||..|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~L~~~~~~E~~ai~~Y~~~~~---~~~d~~~r~ll~~I~~eE~~H~~ 148 (154)
T cd07908 85 SDKFTYWTGKYVNYGESIKE-MLKLDIASEKAAIAKYKRQAE---TIKDPYIRALLNRIILDEKLHIK 148 (154)
T ss_pred cccCCcCCccccCCccCHHH-HHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0011123222 333446778877775444444 56899999999999999999985
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=96.25 E-value=0.043 Score=47.50 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHH--HHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcH
Q 016349 168 AHVELNAIDLAW--DTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNV 245 (391)
Q Consensus 168 AHIElnAIDLAw--D~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dl 245 (391)
-.-|+.|+.... -.+++.-+ + .++-.-|-..|.+|..|-.++.++|..+|.... .|... |. ++
T Consensus 10 ~~~E~~a~~~Y~~~a~~a~~~g----~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-~~~~~--~~-------~~ 74 (134)
T cd01041 10 FAGESQARNRYTYFAEKARKEG----Y-EQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-GPPIG--IG-------DT 74 (134)
T ss_pred HHhHHHHHHHHHHHHHHHHHCC----H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-CCCCC--cc-------hH
Confidence 345777777633 33333332 2 344555567899999999999999999998766 33332 11 11
Q ss_pred HHHHhhchhhHhhc-CCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHH
Q 016349 246 AARLAVIPLVQEAR-GLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSV 304 (391)
Q Consensus 246 laRlAvVp~vlEAR-GLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~l 304 (391)
. .+----+-+|.. ..+.=+.+++.-+..||..++.+++.|+.||..|+. ||..+
T Consensus 75 ~-~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~----~l~~~ 129 (134)
T cd01041 75 L-ENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAE----RYKKA 129 (134)
T ss_pred H-HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 1 111111233432 345567788899999999999999999999999984 55544
No 13
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.22 E-value=0.015 Score=56.63 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCCCCCCc-cchhhHHHHH-----h------hhhc---HHHHHhhchhhHhhcCCCCCHH
Q 016349 202 HVADDESRHFAWCSQRLAELGFKYGDMP-AHDVLWNQCK-----K------SSDN---VAARLAVIPLVQEARGLDAGPR 266 (391)
Q Consensus 202 ~VA~DEarHF~Ll~~RL~eLG~~YGDlP-aH~gLWe~a~-----~------T~~d---llaRlAvVp~vlEARGLDvtP~ 266 (391)
..+.+|++|...+..-|..+|.. .++. .++-.|.... + +..+ .+.-.++-..++|+-=+=.+=.
T Consensus 86 ~q~~~EaiH~esYs~~l~tl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~ 164 (280)
T cd07911 86 QFLFEEAKHTDFFRRWLDAVGVS-DDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYY 164 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999875 1100 0111111110 0 1111 1111223344566522211111
Q ss_pred HHH-HHHhCC-ChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHc
Q 016349 267 LTQ-KLIGFG-DHRTSNIVARIADEEVAHVAVGVHWFLSVCQKM 308 (391)
Q Consensus 267 ~i~-kl~~~G-D~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~ 308 (391)
++- -++..| -.-+.++++.|.+||..||.+|..=|+.+.++.
T Consensus 165 ~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~ 208 (280)
T cd07911 165 AWRTICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAAD 208 (280)
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 222 355566 445789999999999999999999999998653
No 14
>PRK10635 bacterioferritin; Provisional
Probab=96.20 E-value=0.24 Score=45.06 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCc-ccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCC-----CCCccchhh
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFT-DILEDGFFADFAHVADDESRHFAWCSQRLAELGFKY-----GDMPAHDVL 234 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~-~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~Y-----GDlPaH~gL 234 (391)
+..|-..-..|+.||+..+-...=|.+.. ..|-..||.. |.||-+|...+.+|+-.||..- +.+.+-..+
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~e----a~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~~v 83 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHE----SIDEMKHADKYIERILFLEGIPNLQDLGKLNIGEDV 83 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCH
Confidence 45555555679999999775554454220 1122334444 8899999999999999999862 333333444
Q ss_pred HHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHH
Q 016349 235 WNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFL 302 (391)
Q Consensus 235 We~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~ 302 (391)
-++.. .|+ .+|.-..+.=-..++-.+..||..|.++++.|+.||..|...=..++.
T Consensus 84 ~eml~---~dl---------~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 84 EEMLR---SDL---------RLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred HHHHH---HHH---------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 233 334333333333455566789999999999999999999864444433
No 15
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=95.86 E-value=0.29 Score=40.83 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHH-
Q 016349 163 MLHNLAHVELNAIDLAWDTVVRFSPFTDILE--DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCK- 239 (391)
Q Consensus 163 lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP--~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~- 239 (391)
.|=...+.|+.++...+-..+-|.+. ++| ..||.+ .+.+|..|+..+.+|+..+|..- +.-..-.....
T Consensus 3 ~Ln~~l~~e~~~~~~y~~~~~~~~~~--~~~~l~~~~~~---~a~e~~~h~~~l~e~i~~lgg~p---~~~~~~~~~~~~ 74 (142)
T PF00210_consen 3 ALNEQLALELQASQQYLNMHWNFDGP--NFPGLAKFFQD---QAEEEREHADELAERILMLGGKP---SGSPVEIPEIPK 74 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST--THHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTS-S---STSHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CchhhHHHhHH---HHHHHHHHHHHHHHHHhcCCCCC---CCcHHHhhhhhc
Confidence 44455667788887766554444432 232 245554 78899999999999999999621 11111111110
Q ss_pred -hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 240 -KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 240 -~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
....++..-|..+ +-.|....+.--.+++.....||..+.++++.+..||..|+..=..|+..+++
T Consensus 75 ~~~~~~~~~~l~~~-l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l~~ 141 (142)
T PF00210_consen 75 PPEWTDPREALEAA-LEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNLKR 141 (142)
T ss_dssp SSSSSSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0012444333322 35566666666778888888899999999999999999999988888877754
No 16
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=95.80 E-value=0.056 Score=53.86 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=67.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCC------ccchhhH-HHH----Hh--hhhc---HHHHHhhchhhHhhcCCCCC
Q 016349 201 AHVADDESRHFAWCSQRLAELGFKYGDM------PAHDVLW-NQC----KK--SSDN---VAARLAVIPLVQEARGLDAG 264 (391)
Q Consensus 201 l~VA~DEarHF~Ll~~RL~eLG~~YGDl------PaH~gLW-e~a----~~--T~~d---llaRlAvVp~vlEARGLDvt 264 (391)
...+.+|++|...+...|..+|....-. |.-...| +.. .. +..+ ++..++....++|+-=+=.+
T Consensus 102 ~~q~~~EaiH~e~Y~~~le~l~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sg 181 (311)
T PRK08326 102 TQFAFEEAKHTEAFRRWFDAVGVTEDLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETG 181 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999876211 1111121 000 00 0011 22222334666776433333
Q ss_pred HHHH-HHHHhCCCh-hHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 265 PRLT-QKLIGFGDH-RTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 265 P~~i-~kl~~~GD~-~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
=.++ .-|++.|-. -.+++++.|.+||..||.+|..=++.+.+.
T Consensus 182 F~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e 226 (311)
T PRK08326 182 YYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAA 226 (311)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2332 356666755 478999999999999999999999999865
No 17
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=95.63 E-value=0.054 Score=44.94 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCC----Cccc----hhhHHHHH
Q 016349 168 AHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGD----MPAH----DVLWNQCK 239 (391)
Q Consensus 168 AHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGD----lPaH----~gLWe~a~ 239 (391)
...|..+.++.....-++.+. + .+.-.=|.+.|.||.+|..++.+.+.++|...-. ..+- ..++....
T Consensus 7 ~~~E~~~~~~Y~~~a~~~~~~--~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (137)
T PF02915_consen 7 IKMELEAAKFYRELAEKAKDE--G--PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEETD 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--T--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc--c--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhhh
Confidence 467999998877666666531 1 3466778889999999999999999998643211 0000 00011111
Q ss_pred hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 240 KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 240 ~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
. ++. .+.=+-+..|..+.+ .+.+-....+|....++++.|..||-.|+..
T Consensus 83 ~---~~~-~~l~~a~~~E~~~~~---~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~ 132 (137)
T PF02915_consen 83 E---NLE-EALEMAIKEEKDAYE---FYAELARKAPDPEIRKLFEELAKEEKEHEDL 132 (137)
T ss_dssp H---HHH-HHHHHHHHHHHTHHH---HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHH-HHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 222223455665554 5666677789999999999999999999863
No 18
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=95.38 E-value=0.53 Score=47.05 Aligned_cols=154 Identities=17% Similarity=0.110 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCc--------cchh
Q 016349 162 YMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMP--------AHDV 233 (391)
Q Consensus 162 ~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlP--------aH~g 233 (391)
..+=.+.|.|+.|.-- .-.+.|+.. -...-.-.+=.+.||-||-.++..+...|+-.|+++. .++-
T Consensus 103 ~~l~p~~~~E~ga~~~-~a~~~r~~~-----~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp 176 (304)
T cd01058 103 RYLGPLRHVEHGLQMA-NAYVAQYAP-----STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDP 176 (304)
T ss_pred HHHhhHHHHHHHHHHH-HHHHHhhcc-----hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCc
Confidence 3445678999877543 335677763 3344445556789999999999999999999999973 3455
Q ss_pred hHHHHHhh------hhcHHHHHhhchhhHhhc--CCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHH
Q 016349 234 LWNQCKKS------SDNVAARLAVIPLVQEAR--GLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVC 305 (391)
Q Consensus 234 LWe~a~~T------~~dllaRlAvVp~vlEAR--GLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC 305 (391)
.|+-+.+. ..|...=+-.+.+|+|.- +|=..+ +.+-....||..+..++..|..||-.|-+.|.-=|+.++
T Consensus 177 ~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~-~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~alvk~l~ 255 (304)
T cd01058 177 AWQGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRE-LDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDALVKTAA 255 (304)
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56554322 256667777788888862 333333 567778899999999999999999999999999999998
Q ss_pred HHcCCCchHHHHHHHHhc
Q 016349 306 QKMKRAPCSTFKDLLKEY 323 (391)
Q Consensus 306 ~~~g~dp~~tf~~lv~~~ 323 (391)
++ +-+-....+..+.+|
T Consensus 256 ~~-~~~N~~~lq~w~~~w 272 (304)
T cd01058 256 ED-SPHNRALLQGWLEKW 272 (304)
T ss_pred cc-ChhHHHHHHHHHHHH
Confidence 86 222234455555555
No 19
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=95.19 E-value=0.087 Score=51.63 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh---CCC---------CCCCccchhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHH
Q 016349 200 FAHVADDESRHFAWCSQRLAEL---GFK---------YGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRL 267 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eL---G~~---------YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~ 267 (391)
...+|.||..|.+++-+.|++| |.+ -+++ -+-.|++.-...-.+.+.|..++-.+ .-.+
T Consensus 52 l~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~~~~~-rn~~l~e~p~~dwa~~v~r~~l~d~~--------~~~~ 122 (263)
T PF05138_consen 52 LANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRDAREF-RNLLLFEQPNGDWADTVARQFLFDRA--------GKVL 122 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHHTTCS--SSGGGGS---SHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcccchh-hhhhhhccCCCCHHHHHHHHHHHHHH--------HHHH
Confidence 5789999999999999999999 311 1111 01111111111111223333333322 1236
Q ss_pred HHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 268 TQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 268 i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
.+.|....|..-++|+..|..||-=|+..|..|++.++.
T Consensus 123 l~~l~~ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~ 161 (263)
T PF05138_consen 123 LEALADSSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGD 161 (263)
T ss_dssp HHHHTT-SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888889999999999999999999999999999984
No 20
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.11 E-value=0.081 Score=52.89 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCcc---------chhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHH
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPA---------HDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQK 270 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPa---------H~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~k 270 (391)
++.++.||.-|.+++-+.+++||..=-|.=. +| +.+.-..+-.+...|-.+ +.+.+ -.....
T Consensus 59 l~niaqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~~f~n-l~e~P~~dwA~tivr~~l----~D~~~----~~~~~~ 129 (289)
T TIGR02156 59 LMAKVQDEAGHGLYLYAAAETLGVSREELLDALLTGKAKYSS-IFNYPTLTWADIGVIGWL----VDGAA----IMNQTP 129 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChHhhcc-chhCCCCCHHHHHHHHHH----HHHHH----HHHHHH
Confidence 5789999999999999999999873100000 00 111111111111222222 22221 123568
Q ss_pred HHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 271 LIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 271 l~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
|.+.-|..-+.|+.+|+.||-=|++.|..|+..||+
T Consensus 130 L~~SSy~plA~ia~Ki~KEe~yH~rh~~~wl~rL~~ 165 (289)
T TIGR02156 130 LCRCSYGPYSRAMVRICKEESFHQRQGYEIMLTLAR 165 (289)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888999999999999999999999999999999996
No 21
>PRK10304 ferritin; Provisional
Probab=94.92 E-value=0.45 Score=43.58 Aligned_cols=133 Identities=15% Similarity=0.025 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCccchhhHHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPAHDVLWNQC 238 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPaH~gLWe~a 238 (391)
+..|=.-.+.||.|+.+.+-...=|.. .++| +|=.=+-..+.||-.|...+.+||..+|.. .+++|.-..-|...
T Consensus 7 ~~~Ln~qin~El~As~~Yl~ma~~~~~--~gl~-g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~ 83 (165)
T PRK10304 7 IEKLNEQMNLELYSSLLYQQMSAWCSY--HTFE-GAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSL 83 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCH
Confidence 456777789999999997755444543 2353 344444567999999999999999999987 56665333444433
Q ss_pred HhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHh---HhhhHhhhhHHHHHH
Q 016349 239 KKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADE---EVAHVAVGVHWFLSV 304 (391)
Q Consensus 239 ~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~D---EI~HVa~G~rWF~~l 304 (391)
.+.-.. -+-+|...-..--.+++.-...+|..|...|+-+++| |+.||+.=..+++.+
T Consensus 84 ~e~~~~--------~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~ 144 (165)
T PRK10304 84 DELFQE--------TYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLA 144 (165)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322111 1223333333333467777889999999999999999 999998766666655
No 22
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.80 E-value=0.64 Score=41.28 Aligned_cols=129 Identities=17% Similarity=0.054 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCC--CCCccchhhHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDT-VVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKY--GDMPAHDVLWNQ 237 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~-v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~Y--GDlPaH~gLWe~ 237 (391)
+.+|=..-.-|+.|+-..+-. .+.+.. ++ .++-.-+.+.|.||..|..++.+|+.++|..- ..+|....
T Consensus 8 ~~~LN~~l~~E~~a~~~Y~~~~~~~~~~---~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~---- 79 (157)
T TIGR00754 8 IQHLNKQLTNELTAINQYFLHARMQKNW---GL-KELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRI---- 79 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCC----
Confidence 455666667799998874433 233331 12 22223346789999999999999999999863 33332211
Q ss_pred HHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHH
Q 016349 238 CKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFL 302 (391)
Q Consensus 238 a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~ 302 (391)
..|+..-+- .-+-.|....+.--..++.....||..+..+|+-|..||..|+..=..++.
T Consensus 80 ----~~~~~e~l~-~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 80 ----GETVREMLE-ADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred ----CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221111 112334444443334455556789999999999999999999865444444
No 23
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=94.73 E-value=0.42 Score=44.24 Aligned_cols=134 Identities=28% Similarity=0.394 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHH-hhHHHHHHHHHHhCCCCCCCccc-hhhHHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDES-RHFAWCSQRLAELGFKYGDMPAH-DVLWNQC 238 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEa-rHF~Ll~~RL~eLG~~YGDlPaH-~gLWe~a 238 (391)
+-+|-.-+--|+-|--. =++.||.- .+|-.+=-.-++++|.+|- +||.|+.+||.+||. |+|-. .-||+..
T Consensus 19 i~~Llka~AaE~tt~YY--Ytilr~~l--~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~---~~Prd~~~l~dIS 91 (172)
T COG2406 19 IELLLKAAAAEWTTYYY--YTILRYAL--KGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGG---DLPRDMKKLHDIS 91 (172)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHhhc
Confidence 44444444445555322 24456642 2366677778888898886 599999999999995 45532 3344321
Q ss_pred -------HhhhhcHHHHHhhch--------hhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHH
Q 016349 239 -------KKSSDNVAARLAVIP--------LVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLS 303 (391)
Q Consensus 239 -------~~T~~dllaRlAvVp--------~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~ 303 (391)
.+--.|+..-|+++= -+-|=.+ +..-.|.++-++-+.|++|||.|- .||-.
T Consensus 92 gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~----------~T~GkDprTyeLa~~IL~eEi~hr----~~~~~ 157 (172)
T COG2406 92 GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICN----------LTAGKDPRTYELAEAILREEIEHR----TWFLE 157 (172)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHc----------cccCCCcchHHHHHHHHHHHHHHH----HHHHH
Confidence 011123333332211 1222222 224468999999999999999995 58877
Q ss_pred HHHHcCCCchHHHHH
Q 016349 304 VCQKMKRAPCSTFKD 318 (391)
Q Consensus 304 lC~~~g~dp~~tf~~ 318 (391)
+- |..|...|+.
T Consensus 158 ll---~~~~s~hf~R 169 (172)
T COG2406 158 LL---GKEPSGHFKR 169 (172)
T ss_pred Hh---ccCchhhhhh
Confidence 64 4456665543
No 24
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=94.55 E-value=0.23 Score=45.92 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHH----
Q 016349 171 ELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVA---- 246 (391)
Q Consensus 171 ElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dll---- 246 (391)
|+.|+.+.---+.-+.+ ..--.-.-+.+.+|.+|+.++.++|.++|++- -+=+-||..+--.-.-+.
T Consensus 12 E~gA~~IY~gQ~~~~~~------~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rp---s~l~PlW~~~gf~lG~~tal~G 82 (165)
T cd01042 12 EVGAVRIYRGQLAVARD------PAVRPLIKEMLDEEKDHLAWFEELLPELGVRP---SLLLPLWYVAGFALGALTALLG 82 (165)
T ss_pred hHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHhhC
Confidence 77887774323323322 22233455688899999999999999998873 223456654432221111
Q ss_pred -----HHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhh
Q 016349 247 -----ARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVG 297 (391)
Q Consensus 247 -----aRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G 297 (391)
+-++-|=.+-+ +.=...+++|...+|.++.+||+.+..||+.|-..+
T Consensus 83 ~~~a~~~~~avE~~V~----~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A 134 (165)
T cd01042 83 KKAAMACTAAVETVVE----EHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIA 134 (165)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111224455555569999999999999999997765
No 25
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=94.52 E-value=1 Score=38.81 Aligned_cols=128 Identities=19% Similarity=0.121 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHH--
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQC-- 238 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a-- 238 (391)
+..|=..-..|+.|+....-..+=+.+. + -..+..=+-+.+.||.+|...+.+|+..||..-=.-+ ..+....
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~~~g~--~-f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~--~~~~~~~~~ 82 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKHVKGP--E-GEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDP--KDWYEISGC 82 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh--HHHHHHhcc
Confidence 3344444455777766533322222221 1 1245556667899999999999999999997632111 0011110
Q ss_pred -----HhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHh
Q 016349 239 -----KKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVA 295 (391)
Q Consensus 239 -----~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa 295 (391)
.....++..-+-. -+..|......--..++... .||..+.++|+.|+.||+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~-~~~~e~~~i~~~~~~~~~a~-~~D~~t~~ll~~~l~de~~h~~ 142 (148)
T cd01052 83 KCGYLPPDPPDVKGILKV-NLKAERCAIKVYKELCDMTH-GKDPVTYDLALAILNEEIEHEE 142 (148)
T ss_pred cccCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHH
Confidence 0011122111111 11233333332233343333 3999999999999999999984
No 26
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=94.51 E-value=0.13 Score=51.95 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHh-------hhhcHHHHHhhchhhHhhcCCCCCHHHHHHHH
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKK-------SSDNVAARLAVIPLVQEARGLDAGPRLTQKLI 272 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~-------T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~ 272 (391)
++.++.||.-|.+++-..+++||..=-+.=. .+..-..+ -..| -+...++...+.+.++ .....|.
T Consensus 77 l~niaqDelGHa~~ly~~aeeLG~~r~e~~~--a~~r~~~~f~n~fe~P~~d-wAdtvvr~~L~D~a~~----~~~~~L~ 149 (314)
T PRK13778 77 LLAKVQDEAGHGLYLYSAAETLGVSREELID--DLLSGKAKYSSIFNYPTLT-WADVGVIGWLVDGAAI----MNQVPLC 149 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH--HHhcchHHhcccccCCCCC-HHHHHHHHHHHHHHHH----HHHHHHh
Confidence 5689999999999999999999872100000 01110000 0001 1112222222222221 2356888
Q ss_pred hCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 273 GFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 273 ~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
...|..-+.|+.+|+.||-=|++.|..|+..||+
T Consensus 150 ~sSy~plA~~a~Ki~KEe~yH~rhg~~wl~rL~~ 183 (314)
T PRK13778 150 RCSYGPYARAMVRICKEESFHQRQGEEILLALAR 183 (314)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997
No 27
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.48 E-value=0.36 Score=41.60 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHh
Q 016349 163 MLHNLAHVELNAIDLAWDTVVRFSPF--TDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKK 240 (391)
Q Consensus 163 lLHaiAHIElnAIDLAwD~v~RF~~~--~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~ 240 (391)
.|.-...+|+.+++....++-+|... ...++..-..=+-+++.+|..|...+++.|. |..-=.-|.-+. ...
T Consensus 5 iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~----~~~ 78 (137)
T PF13668_consen 5 ILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDF----PFD 78 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCcccc----ccC
Confidence 45556688999999988888776310 0125666666677899999999999999997 333211111111 011
Q ss_pred hhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHh
Q 016349 241 SSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVA 295 (391)
Q Consensus 241 T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa 295 (391)
...|...-+. +-+++|.-|...--.+..+ ..|.....++..|..+|.+|.+
T Consensus 79 ~~~~~~~~L~-~A~~~E~~~~~~Y~g~~~~---~~~~~~~~~~~~i~~~Ea~H~~ 129 (137)
T PF13668_consen 79 PFTDDASFLR-LAYTLEDVGVSAYKGAAPQ---IEDPELKALAASIAGVEARHAA 129 (137)
T ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHH
Confidence 1112222222 3458899888876666554 4588889999999999999986
No 28
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=94.43 E-value=0.29 Score=47.24 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=86.5
Q ss_pred CCchhhHHHHHHHHHH---HHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC------C
Q 016349 155 SGLPLNAYMLHNLAHV---ELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK------Y 225 (391)
Q Consensus 155 ~~~~~ra~lLHaiAHI---ElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~------Y 225 (391)
.+...|-.+.|.+|=. |.---+.-...+.++... .-=..||. ..+.+|+.|-..+..-|..+|.. |
T Consensus 40 l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~--~e~~~~~~---~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~ 114 (288)
T cd01049 40 LTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQI--PEARAFYG---FQAFMENIHSESYSYILDTLGKDEERDELF 114 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCh--HHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 3445676677766532 322222112223333311 01134444 57789999999999999999864 1
Q ss_pred CCCccchhhHHHHHhh-----------hhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCCh-hHHHHHHHHHHhHhhh
Q 016349 226 GDMPAHDVLWNQCKKS-----------SDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDH-RTSNIVARIADEEVAH 293 (391)
Q Consensus 226 GDlPaH~gLWe~a~~T-----------~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~-~sa~IL~iI~~DEI~H 293 (391)
..+.-+..+=+.+... ..++..+++.. .++|+-=+=.+=.++-.|...|-. -.+++++.|.+||..|
T Consensus 115 ~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H 193 (288)
T cd01049 115 EAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAF-AILEGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLH 193 (288)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHH
Confidence 1111111111111110 01344444444 667766554455555667777754 3678999999999999
Q ss_pred HhhhhHHHHHHHHHc
Q 016349 294 VAVGVHWFLSVCQKM 308 (391)
Q Consensus 294 Va~G~rWF~~lC~~~ 308 (391)
+.+|..=++.+.++.
T Consensus 194 ~~~~~~~~~~l~~~~ 208 (288)
T cd01049 194 GDFACLLIRELLNEN 208 (288)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998764
No 29
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.26 E-value=0.32 Score=47.38 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchh-hHHHHHhhh---------hcHHHHHhhchhhHhhcCCCCCHHHHH
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDV-LWNQCKKSS---------DNVAARLAVIPLVQEARGLDAGPRLTQ 269 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~g-LWe~a~~T~---------~dllaRlAvVp~vlEARGLDvtP~~i~ 269 (391)
+..++.||..|.+++-+.+.+||.. | ..+- +.....+-. .|-.. .-+....+.+-+ -...+
T Consensus 28 lanialD~lGhAr~~y~~a~el~g~--~--ed~La~~R~~~~frn~~l~e~P~gdwa~-tv~r~~l~d~~~----~~~l~ 98 (237)
T TIGR02158 28 LANIALDLLGHARMFLSLAGQLGGG--D--EDTLAFFRDEAEFRNLRLTELPNGDFAL-TIARQFLYDAYK----VLLLE 98 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--C--HHHHHHhcChHHhhhhHHHhCCCCCHHH-HHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999753 2 2111 111111100 11111 111122222222 12467
Q ss_pred HHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 270 KLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 270 kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
.|.+..|..-+.|..+|..||-=|+..|..|+..+|..
T Consensus 99 ~L~~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~g 136 (237)
T TIGR02158 99 ALTQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLG 136 (237)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999864
No 30
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=93.92 E-value=1.5 Score=37.59 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCC
Q 016349 164 LHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYG 226 (391)
Q Consensus 164 LHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YG 226 (391)
+...-.+|.++..+.....-.-.+ ..-..=|...|.+|.+|...+.+.+.++|...-
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~------~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~ 59 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKD------PENREILLKLAEDERRHAEFWKKFLGKRGVPPP 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 344557888888876655444432 234555778999999999999999999887653
No 31
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=93.92 E-value=1.2 Score=47.26 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhH------H
Q 016349 163 MLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLW------N 236 (391)
Q Consensus 163 lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLW------e 236 (391)
.+=++.|.|+.|.--. -.+.|+... ..-..-.+=.+.||.||..+..-++.+|.-.|-.|.--.-.| +
T Consensus 82 ~~~a~~~~Ey~a~~~~-a~~~R~a~s-----~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~ 155 (465)
T cd01057 82 FLGAITPGEYAAVRGM-AMLGRFAPA-----AELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAG 155 (465)
T ss_pred HhccccHHHHHHHHHH-HHHHhhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHH
Confidence 3445789999998543 356788743 112223344578999999999999999988885554322222 2
Q ss_pred HHHh------hhhcHHHHHhhchhhHhh--cCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 237 QCKK------SSDNVAARLAVIPLVQEA--RGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 237 ~a~~------T~~dllaRlAvVp~vlEA--RGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
.+.+ +..|..+-+..+.+|+|. -+|=.. .+++--...||..+..|+.-|..||-.|.+.|.-=+.-+.+
T Consensus 156 ~~R~~~ed~~~t~D~~E~~valnlvfE~~ftnl~~~-~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll~~l~~ 232 (465)
T cd01057 156 AAKRFFFDGFITGDAVEAALALQFVFETAFTNLLFV-ALASDAAANGDYATPTVFLSIQSDEARHMANGYPTLVLLEN 232 (465)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhHHHhhhHHHHH-HHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 2211 135777888888999997 233223 44666778999999999999999999999999998844433
No 32
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=93.80 E-value=1.2 Score=39.78 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCccch-hhHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPAHD-VLWNQ 237 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPaH~-gLWe~ 237 (391)
...|....+.|+.|+...+-...=|.+..-++| +|-.=+-..|.||-.|...+.+|+..+|.. +..+|.-. .-|..
T Consensus 5 ~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~-g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~~~~ 83 (161)
T cd01056 5 EAALNKQINLELNASYVYLSMAAYFDRDDVALP-GFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDEWGS 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcccCC
Confidence 457888899999999997766555654211343 344444458999999999999999999986 55655554 33433
Q ss_pred HHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHH-HHHhHhhhHhhhhHHHHHH
Q 016349 238 CKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVAR-IADEEVAHVAVGVHWFLSV 304 (391)
Q Consensus 238 a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~i-I~~DEI~HVa~G~rWF~~l 304 (391)
..+.- -.-+-+|..-...--.+++--+..+|..+...|+- ++.|++.|++.=..++..+
T Consensus 84 ~~e~l--------~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l 143 (161)
T cd01056 84 GLEAL--------ELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNL 143 (161)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 22211 11123333322222334555566799999999998 9999999986544444443
No 33
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=93.24 E-value=1.7 Score=37.60 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhh
Q 016349 164 LHNLAHVELNAIDLAWDT--VVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKS 241 (391)
Q Consensus 164 LHaiAHIElnAIDLAwD~--v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T 241 (391)
|=.-.+-|+.|....... .++.-+ +|. +-.=|-..|.+|..|...+.+.| |++| ..+.++.+
T Consensus 6 L~~a~~~E~~a~~~Y~~~a~~a~~eG----~~~-~A~~f~~~a~eE~~HA~~~~~~l-------~~i~--~~~~~~le-- 69 (123)
T cd01046 6 LEANFKGETTEVGMYLAMARVAQREG----YPE-VAEELKRIAMEEAEHAARFAELL-------GKVS--EDTKENLE-- 69 (123)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHCC----CHH-HHHHHHHHHHHHHHHHHHHHHHH-------hcCc--ccHHHHHH--
Confidence 334456688888764433 333332 332 44444568899999999999865 5555 22222222
Q ss_pred hhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHh
Q 016349 242 SDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVA 295 (391)
Q Consensus 242 ~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa 295 (391)
.++-+=..+.. .=|.+++.-+.-||..++..|+.|..+|-.|+.
T Consensus 70 -------~a~~~E~~~~~---~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~ 113 (123)
T cd01046 70 -------MMLEGEAGANE---GKKDAATEAKAEGLDEAHDFFHEAAKDEARHGK 113 (123)
T ss_pred -------HHHHhHHHHHH---hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 22323233333 347899999999999999999999999999985
No 34
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=92.01 E-value=1.2 Score=43.31 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=82.6
Q ss_pred CCchhhHHHHHHHHHH---H-HHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCcc
Q 016349 155 SGLPLNAYMLHNLAHV---E-LNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPA 230 (391)
Q Consensus 155 ~~~~~ra~lLHaiAHI---E-lnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPa 230 (391)
.+...|-++++.++=. | ...-++. ..+.+.-.. .+ =..||. ..+.+|+.|-..+..-|..+|. |-.-
T Consensus 48 Ls~~e~~~~~~~l~~~~~~D~~v~~~l~-~~i~~~~~~-~E-~~~~l~---~q~~~E~iH~~sYs~il~~l~~---~~~~ 118 (281)
T PF00268_consen 48 LSEEEREAYKRILAFFAQLDSLVSENLL-PNIMPEITS-PE-IRAFLT---FQAFMEAIHAESYSYILDSLGN---DPKE 118 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSS-HH-HHHHHH---HHHHHHHHHHHHHHHHHHHHSS---SHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHhhHH-HHHHHHcCH-HH-HHHHHH---HHHHHHHHHHHHHHHHHHHhcC---ChHH
Confidence 4445576677776643 2 2222222 223333221 01 134544 4677899999999999999982 1111
Q ss_pred chhhHHHHHhh----------------hhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCCh-hHHHHHHHHHHhHhhh
Q 016349 231 HDVLWNQCKKS----------------SDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDH-RTSNIVARIADEEVAH 293 (391)
Q Consensus 231 H~gLWe~a~~T----------------~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~-~sa~IL~iI~~DEI~H 293 (391)
-+.+.+...+. ..++..++ |.-.++|+--+=.+=.++--|...|=. .++++++.|.+||.-|
T Consensus 119 ~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~l-v~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H 197 (281)
T PF00268_consen 119 RDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKL-VASVILEGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLH 197 (281)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHH-HHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHH
Confidence 12222222111 11233332 233466665544444455567777754 4688999999999999
Q ss_pred HhhhhHHHHHHHHH
Q 016349 294 VAVGVHWFLSVCQK 307 (391)
Q Consensus 294 Va~G~rWF~~lC~~ 307 (391)
+.+|..=|+.+++.
T Consensus 198 ~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 198 VEFGIYLFRTLVEE 211 (281)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999864
No 35
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=91.88 E-value=0.76 Score=46.99 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=90.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHH--H---HHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCc
Q 016349 155 SGLPLNAYMLHNLAHVELNAIDL--A---WDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMP 229 (391)
Q Consensus 155 ~~~~~ra~lLHaiAHIElnAIDL--A---wD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlP 229 (391)
.+..+|-+..+.++=. .+.|. + +..+++.-. ..+...=....+.+|+.|-..+.--|..+|.+=.
T Consensus 91 Lt~~Er~~~~~il~ff--~~~Ds~v~~nl~~~l~~~i~-----~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~--- 160 (369)
T PRK07209 91 LTEDERRIVKRNLGFF--STADSLVANNIVLAIYRHIT-----NPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG--- 160 (369)
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---
Confidence 4555676677777643 23332 1 122333322 2233334457889999999999999999976321
Q ss_pred cchhhHHHHH-----------------------------hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChh-H
Q 016349 230 AHDVLWNQCK-----------------------------KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHR-T 279 (391)
Q Consensus 230 aH~gLWe~a~-----------------------------~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~-s 279 (391)
.++++.. .+..+++.+|+....++|+-=+=.+=.++--|.+.|-.. +
T Consensus 161 ---e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~ 237 (369)
T PRK07209 161 ---EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGI 237 (369)
T ss_pred ---HHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccH
Confidence 1222111 012235555555566677776666666666777777764 5
Q ss_pred HHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 280 SNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 280 a~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
+.+++-|.+||.-|+.+|..=++.++.+
T Consensus 238 ~~~i~~I~RDE~~H~~f~~~l~~~l~~e 265 (369)
T PRK07209 238 AEQYQYILRDESMHLNFGIDLINQIKLE 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999864
No 36
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=90.91 E-value=7.6 Score=37.25 Aligned_cols=140 Identities=22% Similarity=0.239 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCcc-------chh
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPA-------HDV 233 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPa-------H~g 233 (391)
...+=.+.|.|+.|.=.. -.+.||... ...-.-.+=.+.||.||...+.-++.++--.|.++-. .+-
T Consensus 76 ~~~~~~~~~~E~ga~~~~-a~~~r~~~~-----~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~~~p 149 (233)
T PF02332_consen 76 KRHLGPLRHAEYGAQMAS-AYIARFAPG-----TAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWLNDP 149 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHHHSH
T ss_pred HHHcCCcchHHHHHHHHH-HHHHhhcCc-----HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHhhCc
Confidence 345567889999886554 367888742 2333333446889999999999999999666666551 133
Q ss_pred hHHHHHhh------hhcHHHHHhhchhhHhhcCCC--CCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHH
Q 016349 234 LWNQCKKS------SDNVAARLAVIPLVQEARGLD--AGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVC 305 (391)
Q Consensus 234 LWe~a~~T------~~dllaRlAvVp~vlEARGLD--vtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC 305 (391)
.|+.+.+. ..|...=+..+.+|+|.- |+ +--.+.+.....||..+..++..|..||-.|.+.|.-=|+.+.
T Consensus 150 ~wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l-~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~al~~~~~ 228 (233)
T PF02332_consen 150 AWQPLRRLVEDLLVTYDWFEAFVALNLVFEPL-FTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDALFKMAL 228 (233)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332 234444455567777753 11 1122356677899999999999999999999999987777765
Q ss_pred HH
Q 016349 306 QK 307 (391)
Q Consensus 306 ~~ 307 (391)
++
T Consensus 229 ~~ 230 (233)
T PF02332_consen 229 ED 230 (233)
T ss_dssp CT
T ss_pred hC
Confidence 43
No 37
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=89.85 E-value=7.4 Score=36.92 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccc---hhhHHHHHhhh
Q 016349 166 NLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAH---DVLWNQCKKSS 242 (391)
Q Consensus 166 aiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH---~gLWe~a~~T~ 242 (391)
.=-|-|+-|--.|+-.+.+++. -.+..+-.+..|.||-+||....+-|+.-|+.|-.+|+. .||-.+ .+|
T Consensus 35 DH~~CE~KAa~tAl~li~kY~~-----~~~lv~km~~larEEL~HFeqV~eilq~RnI~~~~i~asrYa~~l~~~-~rt- 107 (203)
T COG4445 35 DHLHCELKAAQTALNLIRKYPS-----NTDLVDKMVLLAREELHHFEQVLEILQARNIPYVPIPASRYAKGLLAA-VRT- 107 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHH-HHh-
Confidence 3346799999999999999985 367888899999999999999999999999999999997 456554 445
Q ss_pred hcH---HHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHH
Q 016349 243 DNV---AARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHW 300 (391)
Q Consensus 243 ~dl---laRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rW 300 (391)
|.+ +..+ ||.-+.|||... -..+|.-.=|.+-++--.-.++-|..|. |+.|
T Consensus 108 ~EPqrliD~L-ivga~IEARScE----Rfa~LaphldeelakFY~gLl~SEaRHf--qdYl 161 (203)
T COG4445 108 HEPQRLIDKL-IVGAYIEARSCE----RFAALAPHLDEELAKFYKGLLRSEARHF--QDYL 161 (203)
T ss_pred cCcHHHHHHH-HHHHHHhhhhHH----HHHhhcccchHHHHHHHHHHHHHHHHHH--HHHH
Confidence 333 3333 667789999764 3334445557777787788889999984 5555
No 38
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=89.66 E-value=2 Score=42.73 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=86.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH--HHHHhhhcCCCcccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCc
Q 016349 154 NSGLPLNAYMLHNLAHVELNAIDL--AWDTVVRFSPFTDILE--DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMP 229 (391)
Q Consensus 154 ~~~~~~ra~lLHaiAHIElnAIDL--AwD~v~RF~~~~~~lP--~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlP 229 (391)
..+...|-+..|.++=. .+.|. +-+.+-+|...- .-| +.||. ..+..|+.|-..+..-|..+|.. +
T Consensus 50 ~Lt~~Er~~~~~~l~~~--~~~D~~v~~~~~~~~~~~~-~~~E~~~~~~---~q~~~E~iH~~sYs~il~tl~~~----~ 119 (324)
T PRK09614 50 KLSDEEKNLYTRVFGGL--TLLDTLQNNNGMPNLMPDI-TTPEEEAVLA---NIAFMEAVHAKSYSYIFSTLCSP----E 119 (324)
T ss_pred hCCHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHC-CcHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCC----h
Confidence 35555677777877754 33332 111112222110 112 24444 57789999999999999998642 2
Q ss_pred cchhhHHHHHhhhhcHHHH------------------HhhchhhHhhcCCCCCHHHHHHHHhCCChh-HHHHHHHHHHhH
Q 016349 230 AHDVLWNQCKKSSDNVAAR------------------LAVIPLVQEARGLDAGPRLTQKLIGFGDHR-TSNIVARIADEE 290 (391)
Q Consensus 230 aH~gLWe~a~~T~~dllaR------------------lAvVp~vlEARGLDvtP~~i~kl~~~GD~~-sa~IL~iI~~DE 290 (391)
.-+.+++... +...+..| ..+...++|+-=+=.+=.++--|.+.|-.. ++++++.|.+||
T Consensus 120 ~~~~~f~~~~-~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE 198 (324)
T PRK09614 120 EIDEAFEWAE-ENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDE 198 (324)
T ss_pred hHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhh
Confidence 1133333211 11122222 223344566655555555666677777664 578999999999
Q ss_pred hhhHhhhhHHHHHHHHHcC
Q 016349 291 VAHVAVGVHWFLSVCQKMK 309 (391)
Q Consensus 291 I~HVa~G~rWF~~lC~~~g 309 (391)
.-|+.+|..=++.+.++..
T Consensus 199 ~~H~~f~~~l~~~l~~e~~ 217 (324)
T PRK09614 199 SLHGYYIGYLFQEGLEELP 217 (324)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999987643
No 39
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=5.8 Score=36.97 Aligned_cols=125 Identities=20% Similarity=0.125 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHH----------H
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQ----------C 238 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~----------a 238 (391)
-.|.-||.-..-..-|+.+. +...=+..+|.||.+|..++.+.|.+++.+-...-.--+-|+. -
T Consensus 34 ~~E~eA~~fY~~lae~~~~~------~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (176)
T COG1633 34 RGELEAIKFYEELAERIEDE------EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKE 107 (176)
T ss_pred HHHHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCcccc
Confidence 56888888776666666642 3444455689999999999999999998765222111111111 1
Q ss_pred HhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHH
Q 016349 239 KKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLS 303 (391)
Q Consensus 239 ~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~ 303 (391)
....+|++. .|-..+++ =-|.-+.+-..+...-|....+++..|..+|-+|+..=..=++.
T Consensus 108 ~~~~~~~~~---~I~~a~~~-E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~ 168 (176)
T COG1633 108 MEKSVSYLE---AIEAAMEA-EKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSLYNR 168 (176)
T ss_pred cccchhHHH---HHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333332 22222222 23445566667777778888889999999999998653333333
No 40
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=88.10 E-value=6.5 Score=36.64 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHH--
Q 016349 171 ELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAAR-- 248 (391)
Q Consensus 171 ElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaR-- 248 (391)
|+.|+.+.-=-+.-+. ..........+.+.+|..|..++.++|.++|++ -.+=+-||..+--.-..+.+.
T Consensus 14 E~~A~~iY~gQ~~~~~-----~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~R---pS~l~Plw~~~g~~LG~~tal~G 85 (172)
T PF03232_consen 14 EVGAVRIYRGQLAVAR-----RDPELRPFLKEMAEEEKDHLAWFEQLLPELRVR---PSLLNPLWYVAGFALGALTALLG 85 (172)
T ss_pred HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCC---CcHHHHHHHHHHHHHHHHHHhhc
Confidence 7777776322222222 124566777788889999999999999999886 334467787644322222111
Q ss_pred ----HhhchhhHhhcCCCCCHHHHHHHHh---CCChhHHHHHHHHHHhHhhhHhhh
Q 016349 249 ----LAVIPLVQEARGLDAGPRLTQKLIG---FGDHRTSNIVARIADEEVAHVAVG 297 (391)
Q Consensus 249 ----lAvVp~vlEARGLDvtP~~i~kl~~---~GD~~sa~IL~iI~~DEI~HVa~G 297 (391)
|+.+--|=+.=+ +.=-..++.|.. ..|.++.++|+.+..||+.|-..+
T Consensus 86 ~~~~~a~t~avE~~V~-~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A 140 (172)
T PF03232_consen 86 DKAAMACTAAVETVVE-EHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTA 140 (172)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 122111111111 122234566664 568899999999999999998776
No 41
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=87.31 E-value=0.84 Score=44.79 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccc---hhhHHHHHhhh-hcHHHHHhhchhhHhhcCCCCCHHHHH
Q 016349 194 DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAH---DVLWNQCKKSS-DNVAARLAVIPLVQEARGLDAGPRLTQ 269 (391)
Q Consensus 194 ~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH---~gLWe~a~~T~-~dllaRlAvVp~vlEARGLDvtP~~i~ 269 (391)
.+-....+.+|.||-.||.++.+.|.+-|+.||-...- ++|-+.+.+.. +-++.||-|-. +.||||.. -..
T Consensus 100 ~eLv~~Ms~LarEEL~HFeqVl~im~~RGi~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~A-lIEARSCE----RF~ 174 (240)
T PF06175_consen 100 EELVDKMSRLAREELHHFEQVLEIMKKRGIPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGA-LIEARSCE----RFA 174 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SHHHHHHTTS-SSTTHHHHHHHHHHH-HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHH-hHhhhhHH----HHH
Confidence 45677788999999999999999999999999988765 44554444322 24566665444 78999875 223
Q ss_pred HHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 270 KLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 270 kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
.|...=|.+-++--.-++.-|-+|...
T Consensus 175 lLa~~lD~eL~~FY~~Ll~SEArHy~~ 201 (240)
T PF06175_consen 175 LLAEHLDEELAKFYRSLLRSEARHYQD 201 (240)
T ss_dssp HHGGGS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHhhHHHH
Confidence 333333778777788888999999753
No 42
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=86.04 E-value=8.5 Score=38.84 Aligned_cols=145 Identities=19% Similarity=0.128 Sum_probs=74.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHH-------hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHh
Q 016349 201 AHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCK-------KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIG 273 (391)
Q Consensus 201 l~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~-------~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~ 273 (391)
-+...||.||-.+|++.|.--|-- =|....-+.+.. .+.+++..=| +-..++|-..--.--. ..++.+
T Consensus 100 ~~WtaEE~rHg~aL~~YL~~sg~v---dp~~le~~~~~~~~~G~~~~~~~~~~~~~-~y~~fqE~aT~v~y~n-l~~~a~ 174 (297)
T cd01050 100 RRWTAEENRHGDLLNKYLYLTGRV---DPRALERTRQYLIGSGFDPGTDNSPYRGF-VYTSFQELATRISHRN-TARLAG 174 (297)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCCCCcccHHHHH-HHHHHHHHHHHHHHHH-HHHHhc
Confidence 356889999999999998765431 111110000000 0000111111 1111333222211111 223333
Q ss_pred CCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchHHHHHHHHhcCCC---CCCCCC---HHHHHhcCCCccccc
Q 016349 274 FGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVE---LKGPFN---YSARDEAGIPRDWYD 347 (391)
Q Consensus 274 ~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~tf~~lv~~~~~~---lk~PFN---~eAR~~AGfs~~~y~ 347 (391)
.||..-++|+.+|-.||..|.++=.+=++.+-+..+.+....|.+.++++.-+ +.+-|- .-+.+...++..-|.
T Consensus 175 ~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~~~~MP~~~~~~~f~~~~~~~a~~gvY~~~~~~ 254 (297)
T cd01050 175 AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMRKIVMPGHLMYPLFERFAAVAARAGVYTARDYD 254 (297)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhCCCChhhhhhhHHHHHHHHHHHcCCCHHHHH
Confidence 59999999999999999999988555555544433333344566666665211 212222 334445567777666
Q ss_pred chh
Q 016349 348 PSA 350 (391)
Q Consensus 348 ~L~ 350 (391)
++.
T Consensus 255 ~V~ 257 (297)
T cd01050 255 DIL 257 (297)
T ss_pred HHH
Confidence 654
No 43
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=85.52 E-value=5.4 Score=34.38 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCC----------Cccch-hhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHH
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGD----------MPAHD-VLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLT 268 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGD----------lPaH~-gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i 268 (391)
+=+++.+|.+|+-.+.+|+..||..--. ++-.. +-++.-.--..++..--.++-.+ -..+
T Consensus 36 l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~---------~~~i 106 (139)
T cd01043 36 FEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPAGVLSAKEMVAELLEDYETLIEEL---------REAI 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 3457889999999999999999876221 22222 32322222222233233333322 2345
Q ss_pred HHHHhCCChhHHHHHHHHHHhHhhhH
Q 016349 269 QKLIGFGDHRTSNIVARIADEEVAHV 294 (391)
Q Consensus 269 ~kl~~~GD~~sa~IL~iI~~DEI~HV 294 (391)
+.....||..++++|+-|+.++-.|.
T Consensus 107 ~~a~~~~D~~t~~ll~~il~~~ek~~ 132 (139)
T cd01043 107 ELADEAGDPATADLLTEIIRELEKQA 132 (139)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56666899999999999999988875
No 44
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=85.49 E-value=7 Score=39.32 Aligned_cols=143 Identities=17% Similarity=0.081 Sum_probs=91.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHH--HHHHhhhcCCCcccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC------
Q 016349 155 SGLPLNAYMLHNLAHVELNAIDL--AWDTVVRFSPFTDILE--DGFFADFAHVADDESRHFAWCSQRLAELGFK------ 224 (391)
Q Consensus 155 ~~~~~ra~lLHaiAHIElnAIDL--AwD~v~RF~~~~~~lP--~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~------ 224 (391)
.+...|-+..+.++-. .+.|. +-+.+-.|...- .-| +.|| ...+..|+.|-..+.--+..+|.+
T Consensus 61 Lt~~Er~~~~~~l~~~--~~~D~~v~~~~~~~~~~~~-~~pE~~~~~---~~q~~~E~iHs~sYs~il~tl~~~~~~~~~ 134 (330)
T PTZ00211 61 LNDGERHFIKHVLAFF--AASDGIVLENLAQRFMREV-QVPEARCFY---GFQIAMENIHSETYSLLIDTYITDEEEKDR 134 (330)
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC-CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4445677777777765 45554 212222332110 012 2444 456778999999999999988774
Q ss_pred -CC---CCccchhhHHHHH------hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChh-HHHHHHHHHHhHhhh
Q 016349 225 -YG---DMPAHDVLWNQCK------KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHR-TSNIVARIADEEVAH 293 (391)
Q Consensus 225 -YG---DlPaH~gLWe~a~------~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~-sa~IL~iI~~DEI~H 293 (391)
|. +.|. +=+.+. ++..++..+|+.. .++|+.=+=.+=.++--|++.|=.. ++++++.|.+||.-|
T Consensus 135 ~f~~~~~~p~---i~~K~~~~~~~~~~~~~~~~~lv~~-~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H 210 (330)
T PTZ00211 135 LFHAIETIPA---IKKKAEWAAKWINSSNSFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 210 (330)
T ss_pred HHHHHHhCHH---HHHHHHHHHHHHhcchHHHHHHHHH-HHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHH
Confidence 33 2331 111111 1224566666544 3689888888878888888877664 688999999999999
Q ss_pred HhhhhHHHHHHHHH
Q 016349 294 VAVGVHWFLSVCQK 307 (391)
Q Consensus 294 Va~G~rWF~~lC~~ 307 (391)
+.+|..=++.+.++
T Consensus 211 ~~f~~~l~~~l~~~ 224 (330)
T PTZ00211 211 TDFACLLYSHLKNK 224 (330)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888888743
No 45
>PLN02492 ribonucleoside-diphosphate reductase
Probab=80.29 E-value=25 Score=35.33 Aligned_cols=143 Identities=18% Similarity=0.062 Sum_probs=91.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH--HHHHhhhcCCCcccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCc
Q 016349 154 NSGLPLNAYMLHNLAHVELNAIDL--AWDTVVRFSPFTDILE--DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMP 229 (391)
Q Consensus 154 ~~~~~~ra~lLHaiAHIElnAIDL--AwD~v~RF~~~~~~lP--~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlP 229 (391)
..+...|....+.++-. .+.|. +-+...+|...- .-| +.||. ..+..|+.|-..+..-+..++.+ -.
T Consensus 49 ~Lt~~Er~~~~~il~~~--~~~D~~v~~~~~~~~~~~~-~~~E~~~~~~---~q~~~E~iH~~sYs~i~~tl~~d---~~ 119 (324)
T PLN02492 49 KLTDDERHFISHVLAFF--AASDGIVLENLAARFMKEV-QVPEARAFYG---FQIAIENIHSEMYSLLLDTYIKD---PK 119 (324)
T ss_pred hCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC-CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCC---HH
Confidence 35556677788888865 45554 212222342210 012 34444 46778999999999999887642 11
Q ss_pred cchhhHHHHH----------------hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChh-HHHHHHHHHHhHhh
Q 016349 230 AHDVLWNQCK----------------KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHR-TSNIVARIADEEVA 292 (391)
Q Consensus 230 aH~gLWe~a~----------------~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~-sa~IL~iI~~DEI~ 292 (391)
.-+.+++... ++..+++.+|+..- ++|+-=+=.+=.++--|++.|=.. ++++++-|.+||.-
T Consensus 120 ~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~-~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~ 198 (324)
T PLN02492 120 EKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 198 (324)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHH
Confidence 1122222111 11235555555443 688888888888888888888764 57899999999999
Q ss_pred hHhhhhHHHHHHHH
Q 016349 293 HVAVGVHWFLSVCQ 306 (391)
Q Consensus 293 HVa~G~rWF~~lC~ 306 (391)
|+.+|..=++.+.+
T Consensus 199 H~~~~~~l~~~l~~ 212 (324)
T PLN02492 199 HCDFACLLYSLLKN 212 (324)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888888874
No 46
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=78.96 E-value=9.6 Score=38.38 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=63.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhh----------------cHHHHHhhchhhHhhcCCCCC
Q 016349 201 AHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSD----------------NVAARLAVIPLVQEARGLDAG 264 (391)
Q Consensus 201 l~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~----------------dllaRlAvVp~vlEARGLDvt 264 (391)
...+..|+.|-..+.--|..||.. +--+.+++...+ .. +++.++ +...++|+-=+=.+
T Consensus 95 ~~~~~~E~iHs~sYs~il~tl~~~----~~~~~~f~~~~~-~~~l~~K~~~i~~~~~~~~~~~~~-v~~~~lEgi~Fysg 168 (322)
T PRK13967 95 TNMAFMESVHAKSYSSIFSTLCST----KQIDDAFDWSEQ-NPYLQRKAQIIVDYYRGDDALKRK-ASSVMLESFLFYSG 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC----hhHHHHHHHHhc-CHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHH
Confidence 467889999999999999999762 222344443221 12 333333 23445666444444
Q ss_pred HHHHHHHHhCCCh-hHHHHHHHHHHhHhhhHhhhhH-HHHHH
Q 016349 265 PRLTQKLIGFGDH-RTSNIVARIADEEVAHVAVGVH-WFLSV 304 (391)
Q Consensus 265 P~~i~kl~~~GD~-~sa~IL~iI~~DEI~HVa~G~r-WF~~l 304 (391)
-.+.--|.+.|-. -++++++-|.+||.-|+.+|.. +++.+
T Consensus 169 F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 169 FYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566665 4688999999999999997774 66665
No 47
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=77.83 E-value=15 Score=37.32 Aligned_cols=101 Identities=17% Similarity=0.031 Sum_probs=65.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhh---------------HhhcCCCCCH
Q 016349 201 AHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLV---------------QEARGLDAGP 265 (391)
Q Consensus 201 l~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~v---------------lEARGLDvtP 265 (391)
...+..|+.|-..+.--+..||..= -. +.+++... +...+..|.-.+-.. +|+-=+=.+=
T Consensus 108 ~~q~~~E~IHs~sYs~il~tl~~~~---~~-~~~f~~~~-~~p~l~~K~~~i~~~~~~~~~~~~~va~~~lEGi~FysgF 182 (335)
T PRK13965 108 TNFAFMVAIHARSYGTIFSTLCSSE---QI-EEAHEWVV-STESLQRRARVLIPYYTGDDPLKSKVAAAMMPGFLLYGGF 182 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH---HH-HHHHHHHh-cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999987532 11 34555433 223455554444333 4444333333
Q ss_pred HHHHHHHhCCCh-hHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 266 RLTQKLIGFGDH-RTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 266 ~~i~kl~~~GD~-~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
.++--|.+.|-. -++++++-|.+||.-|+.+|..=|+.+..
T Consensus 183 a~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~ 224 (335)
T PRK13965 183 YLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVA 224 (335)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 344456666665 46789999999999999988776666543
No 48
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=77.01 E-value=10 Score=39.36 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=70.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCC---CC---CCccch--hhHH--HHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHH
Q 016349 202 HVADDESRHFAWCSQRLAELGFK---YG---DMPAHD--VLWN--QCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKL 271 (391)
Q Consensus 202 ~VA~DEarHF~Ll~~RL~eLG~~---YG---DlPaH~--gLWe--~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl 271 (391)
..+..|+.|-..+.--+..||.. |. +.|+.. .-|- .-..+...++.+|+ .-..+|+-=+=.+=.++--|
T Consensus 184 ~q~~~E~iHsesYs~il~tl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv-~~~~lEgi~Fys~Fa~~~~l 262 (410)
T PRK12759 184 SFAAREGIHQRAYALLNDTLGLPDSEYHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLA-KTVFNEGVALFASFAMLLNF 262 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999873 22 122211 0010 00112223444443 33347776665556666777
Q ss_pred HhCCChh-HHHHHHHHHHhHhhhHhhhhHHHHHHHHHc
Q 016349 272 IGFGDHR-TSNIVARIADEEVAHVAVGVHWFLSVCQKM 308 (391)
Q Consensus 272 ~~~GD~~-sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~ 308 (391)
++.|=.. .+++++-|.+||.-|+.+|..=|+.+|+..
T Consensus 263 ~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~ 300 (410)
T PRK12759 263 QRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQEN 300 (410)
T ss_pred HhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777664 578999999999999999999999998753
No 49
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=76.91 E-value=34 Score=30.75 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCccchh-hHHH
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPAHDV-LWNQ 237 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPaH~g-LWe~ 237 (391)
..+|=...+.|+.|....+-...=|....-+|| +|-.=+.+.+.||-.|...+.++|...|.. +..++.-.. -|..
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~-g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~~~~ 83 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATYFDRDDVALK-GVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDEWGG 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccccCC
Confidence 345666778999999997755444532101233 333444457999999999999999999986 444444322 3322
Q ss_pred HHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHH-HHHhHhhhHh
Q 016349 238 CKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVAR-IADEEVAHVA 295 (391)
Q Consensus 238 a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~i-I~~DEI~HVa 295 (391)
++. +--.-+-+|..--..--.+.+.-...||..+...|+- ...|-|.-++
T Consensus 84 -------~~e-~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~~~fi~eQ~ee~~ 134 (160)
T cd00904 84 -------TLD-AMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHFLDEQVKEIK 134 (160)
T ss_pred -------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhhchhhHHHHHHHH
Confidence 221 1111223344333333345566667899999999988 7777776553
No 50
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=75.56 E-value=25 Score=35.26 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHH-------------
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPR------------- 266 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~------------- 266 (391)
++..+.||..|-.++-..+++|+ |.-.+-+. . .+...-+--..++|--.+|-...
T Consensus 54 la~~vqDe~GHg~~l~~laeel~---Gk~~~d~l-----a----~~r~g~~k~n~~~n~P~~~Wadt~~~~fLvD~~~~~ 121 (265)
T COG3396 54 LANIVQDEMGHGWLLYRLAEELE---GKGREDDL-----A----YLRDGRHKRNSLFNLPTGDWADTIVRGFLVDGAAIY 121 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCChHHHH-----H----HHhhhHHHHHHHHcCCCccHHHHHHHHHHHhHHHHH
Confidence 56788999999999999999995 22221100 0 00000011111333323332221
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 267 LTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 267 ~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
....|...-+..-++|+.+|..||.-|-+.|.-|+..+.+.
T Consensus 122 ~l~~l~~ssy~PlA~~a~k~~kEe~fHl~~~~~~l~~l~~g 162 (265)
T COG3396 122 QLEALADSSYGPLARAAQKICKEEEFHLRHGKTWLKRLANG 162 (265)
T ss_pred HHHHHHhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 23456666677889999999999999999999999998664
No 51
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=74.61 E-value=21 Score=37.56 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=63.2
Q ss_pred HHHHHHhhHHHHHHHH------------------HHhCCCCCCC--ccchhhHHHHHhhhhcHHHHHhhchhhHhhcCCC
Q 016349 203 VADDESRHFAWCSQRL------------------AELGFKYGDM--PAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLD 262 (391)
Q Consensus 203 VA~DEarHF~Ll~~RL------------------~eLG~~YGDl--PaH~gLWe~a~~T~~dllaRlAvVp~vlEARGLD 262 (391)
...||-||--+|++.| -.-|++-|.. |.|.-.+-+.++-+. ++.-
T Consensus 164 WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT----~VSH----------- 228 (390)
T PLN00179 164 WTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERAT----FISH----------- 228 (390)
T ss_pred cccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH----HHHh-----------
Confidence 4579999999988654 2346665543 666655555444322 2211
Q ss_pred CCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH-cCCCchHH---HHHHHHh
Q 016349 263 AGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK-MKRAPCST---FKDLLKE 322 (391)
Q Consensus 263 vtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~-~g~dp~~t---f~~lv~~ 322 (391)
-.+.+--.+.||...++|+.+|-.||-.|-.+ |+.++++ ..+||..+ |.+.+++
T Consensus 229 --~NTarlA~~~gDp~la~icg~IAaDE~rHe~f----Y~~iV~~~le~dPd~tm~Aiadmm~~ 286 (390)
T PLN00179 229 --GNTARLAKEHGDAKLAKICGTIAADEKRHETA----YTRIVEKLFEIDPDGAVLAFADMMRK 286 (390)
T ss_pred --hhHHHHHHhcCChHHHHHHHHHhccHHHHHHH----HHHHHHHHHhhCccHHHHHHHHHHHh
Confidence 11333334579999999999999999999987 5555554 46788765 5555544
No 52
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=72.73 E-value=63 Score=33.46 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHhh---------------------
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEA--------------------- 258 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEA--------------------- 258 (391)
....|-.|+-|-+-+.--+..+|..=. .+...+....+...+.+|...+-.....
T Consensus 109 l~~~af~E~iHs~SYs~i~~tl~~~e~----~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~~~~~~~~v~~~ 184 (348)
T COG0208 109 LTNQAFMEAIHARSYSYIFDTLGPTED----EDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLEEFLLKLVVASV 184 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChh----hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHH
Confidence 345677888888888888888776422 2222222222334555566655555544
Q ss_pred ----cCCCCCHHHHHHHHhCCCh-hHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 259 ----RGLDAGPRLTQKLIGFGDH-RTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 259 ----RGLDvtP~~i~kl~~~GD~-~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
=-+=.+=.+.--|.+.|-. -+++|.+.|.+||.-|+.+|..=|+.+-+.
T Consensus 185 ~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e 238 (348)
T COG0208 185 ILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAE 238 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222233345555655 468999999999999999887666665554
No 53
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=67.48 E-value=98 Score=30.01 Aligned_cols=110 Identities=26% Similarity=0.325 Sum_probs=64.8
Q ss_pred HHHHHHH--HHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHH--
Q 016349 171 ELNAIDL--AWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVA-- 246 (391)
Q Consensus 171 ElnAIDL--AwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dll-- 246 (391)
|+-|--+ .=-++.|+++ |+. -.-+.+++|.-|..++.+||.|+|++- .+=+-||.+..=.-.-..
T Consensus 53 E~~A~~iY~GQ~~~~r~~~-----~R~---~l~em~d~E~~HL~~f~~~l~e~~vRP---sll~P~W~~~~FalGA~a~L 121 (204)
T COG2941 53 ELGAQAIYQGQAAVARSPE-----PRI---QLKEMADEEIDHLAWFEQRLLELGVRP---SLLNPLWYAAAFALGAGAGL 121 (204)
T ss_pred HHHHHHHHhhHHHHHcCcc-----hHH---HHHHHHHHHHHHHHHHHHHHHHccCCc---cHHHHHHHHHHHHHHHHHhh
Confidence 5544333 3334556653 333 556788899999999999999999874 345677776443221111
Q ss_pred -------HHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhh
Q 016349 247 -------ARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAV 296 (391)
Q Consensus 247 -------aRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~ 296 (391)
+..+-|-.|.|+. -...++.+.+ -|.++.++|...-.||+.|--.
T Consensus 122 lgdk~am~~teavE~vIe~H----y~~ql~~L~~-~d~~lr~~l~qfR~DE~eH~d~ 173 (204)
T COG2941 122 LGDKAAMGFTEAVETVIEKH----YDGQLRELPN-LDAELRAILAQFRDDELEHLDN 173 (204)
T ss_pred cccHHHHHHHHHHHHHHHHH----HHHHHHHHhh-ccHHHHHHHHHHhhHHHHHHHH
Confidence 1122223333331 0112223322 5668888999999999999644
No 54
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=66.32 E-value=70 Score=32.99 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhC-CCCCCCcc--chhhHHHH-HhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCCh
Q 016349 202 HVADDESRHFAWCSQRLAELG-FKYGDMPA--HDVLWNQC-KKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDH 277 (391)
Q Consensus 202 ~VA~DEarHF~Ll~~RL~eLG-~~YGDlPa--H~gLWe~a-~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~ 277 (391)
+...||-||-.+|++.|---| ++.-.+-- +..+-.-. ..+.+++..-++-+ .++|-.---..-.+.+...+.||.
T Consensus 106 ~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vYt-sfQE~AT~vsh~n~~~~a~~~~Dp 184 (330)
T PF03405_consen 106 RWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVYT-SFQERATQVSHRNTGRLAKQAGDP 184 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred cccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCh
Confidence 467899999999999986544 22221110 01110000 00111222212211 123322111122233334477999
Q ss_pred hHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchH---HHHHHHHh-c
Q 016349 278 RTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCS---TFKDLLKE-Y 323 (391)
Q Consensus 278 ~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~---tf~~lv~~-~ 323 (391)
..+.||.+|-.||..|-.+=.+=+..+ ..+||.. .+.+.+++ +
T Consensus 185 vL~~il~~IA~DE~rH~~fy~~iv~~~---l~~dPd~t~~Ai~~vm~~~f 231 (330)
T PF03405_consen 185 VLAQILGRIAADEARHEAFYRNIVEAY---LELDPDGTMLAIADVMRNKF 231 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH---HhhCcHHHHHHHHHHHHHhc
Confidence 999999999999999998733333333 3456754 46666766 6
No 55
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=63.95 E-value=63 Score=32.69 Aligned_cols=98 Identities=16% Similarity=0.040 Sum_probs=61.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHh---------------hcCCCCCHH
Q 016349 202 HVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQE---------------ARGLDAGPR 266 (391)
Q Consensus 202 ~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlE---------------ARGLDvtP~ 266 (391)
..+..|+-|-..+.--+..+|.. ..-+.+++... ....+..|.-.+-.+.+ +-=+=.+-.
T Consensus 98 ~q~~~E~IHsesYs~il~tl~~~----~~~~~~f~~~~-~~~~l~~K~~~i~~~~~~~~~~~~~va~~~lEgi~FysgF~ 172 (324)
T PRK13966 98 NIAFMESVHAKSYSQIFSTLCST----AEIDDAFRWSE-ENRNLQRKAEIVLQYYRGDEPLKRKVASTLLESFLFYSGFY 172 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc----HHHHHHHHHHh-cCHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHHHHHHHHH
Confidence 46889999999999999999742 23344555433 22355555554444443 322222222
Q ss_pred HHHHHHhCCCh-hHHHHHHHHHHhHhhhHhhhhHHHHHH
Q 016349 267 LTQKLIGFGDH-RTSNIVARIADEEVAHVAVGVHWFLSV 304 (391)
Q Consensus 267 ~i~kl~~~GD~-~sa~IL~iI~~DEI~HVa~G~rWF~~l 304 (391)
++=-|.+.|-. -++++++-|.+||.-|+.+|..=|+.+
T Consensus 173 ~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~ 211 (324)
T PRK13966 173 LPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRG 211 (324)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22233344433 468899999999999999987666644
No 56
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=63.93 E-value=1.3e+02 Score=28.20 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCc---cchh
Q 016349 159 LNAYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMP---AHDV 233 (391)
Q Consensus 159 ~ra~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlP---aH~g 233 (391)
.-+..|+.+---|+-|||-.| .-+|-...+. + ..-+.-+-+.+.||-+|--.+.+|+--|+.. +-+++ .-..
T Consensus 6 ~Vi~~LN~~L~~EL~ainQYf-lHsrM~~~WG-~-~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG~t 82 (157)
T COG2193 6 KVIRLLNEALGLELAAINQYF-LHSRMYKNWG-L-TKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIGET 82 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccCCC
Confidence 346788899999999999887 3344432211 0 1122333467899999999999998877654 22222 1112
Q ss_pred hHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhH
Q 016349 234 LWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHV 294 (391)
Q Consensus 234 LWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HV 294 (391)
.=++.+ .|| .+|--+.+.-...|.-..+.+|..|.++++.|+.||-.|.
T Consensus 83 v~E~L~---~DL---------~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~deEEHi 131 (157)
T COG2193 83 VKEMLE---ADL---------ALEYEARDALKEAIAYCEEVQDYVSRDLLEEILADEEEHI 131 (157)
T ss_pred HHHHHH---HHH---------HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHcchHHHH
Confidence 222221 132 3444444555567888999999999999999999999997
No 57
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=62.46 E-value=60 Score=28.54 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHH---------HHH
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWN---------QCK 239 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe---------~a~ 239 (391)
..|..|=|.....+=+|.. ..- |..+|.+|++|...+...++.+|..-=..+.-.+.+. ...
T Consensus 10 e~Ek~a~~~Y~~~~~k~~~------~~~---F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~ 80 (135)
T cd01048 10 EEEKLARDVYLALYEKFGG------LRP---FSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGP 80 (135)
T ss_pred HHHHHHHHHHHHHHHHhcC------cch---HHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhcc
Confidence 6788888877766666741 122 3457899999999999999999876321111112211 112
Q ss_pred hhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhh
Q 016349 240 KSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVG 297 (391)
Q Consensus 240 ~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G 297 (391)
.|..+.+ |+| +-.|.-+. ..+-+.+....|....+|+..+...|..|-..=
T Consensus 81 ~s~~~al-~~g---~~~E~~~i---~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~~~f 131 (135)
T cd01048 81 KSLQDAL-EVG---VLIEELDI---ADYDRLLERTQNPDIRDVFENLQAASRNHHLPF 131 (135)
T ss_pred ccHHHHH-HHH---HHHHHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 333 23444332 245556677888888999999999999997653
No 58
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=60.91 E-value=1.2e+02 Score=29.42 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCC--------ccchhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCH
Q 016349 194 DGFFADFAHVADDESRHFAWCSQRLAELGFKYGDM--------PAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGP 265 (391)
Q Consensus 194 ~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDl--------PaH~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP 265 (391)
.+.-+++.+.+.=|.||.+=....=+.||+. -|+ |+|+.+-.++.+ ..+..=|-|-.+..|+=-+-
T Consensus 37 P~~~deL~rLakME~rH~kgF~aCGrNL~V~-~Dm~fA~~fF~~Lh~nFq~A~~~--gk~~tCLlIQaliIE~FAIa--- 110 (219)
T PF11266_consen 37 PDQKDELIRLAKMENRHKKGFQACGRNLGVT-PDMPFAKEFFSPLHGNFQRAAAE--GKVVTCLLIQALIIECFAIA--- 110 (219)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHTHHHHHHHH---
T ss_pred cccHHHHHHHHHHHHHHHhHHHHhccCCcCC-CCcHHHHHHHHHHHHHHHHHHHc--CCeeehHHHHHHHHHHHHHH---
Confidence 3557889999999999999888888888876 344 456655544443 56777777777777763221
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHH
Q 016349 266 RLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSV 304 (391)
Q Consensus 266 ~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~l 304 (391)
--.-...+-|.-+.+|-+-+..||-.|..+|-.|++.-
T Consensus 111 -AYniYIpVAD~FARkITegVVkDEy~HLNfGe~WLk~~ 148 (219)
T PF11266_consen 111 -AYNIYIPVADPFARKITEGVVKDEYTHLNFGEEWLKAN 148 (219)
T ss_dssp -HHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhceecccHHHHHHHHHHHhhHHHhcchHHHHHHHH
Confidence 12234467899999999999999999999999999763
No 59
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=57.36 E-value=51 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcC
Q 016349 267 LTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMK 309 (391)
Q Consensus 267 ~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g 309 (391)
+..-....+|.....+++.|-.||..|.. ||..+..+.+
T Consensus 17 Y~~~a~~~~~~~~~~~~~~la~eE~~H~~----~l~~~~~~~~ 55 (139)
T cd01045 17 YLELAEKAKDPELKKLFEELAEEEKEHAE----RLEELYEKLF 55 (139)
T ss_pred HHHHHhHCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc
Confidence 33334456777888999999999999985 5666666654
No 60
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=52.48 E-value=45 Score=31.24 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhH
Q 016349 200 FAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRT 279 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~s 279 (391)
+.++|.+|..|-.-+.+.|.+++.-. ..|..+|. +||=.-..|.. +..|.+.+.-+.-|+.+.
T Consensus 42 fr~iA~~E~~HA~~~~~~l~~~~~~~-------------~~~~eNl~--~aieGE~~e~~--emyp~~ae~A~~~g~~~~ 104 (166)
T COG1592 42 FRAIAEAEAVHAKNHLKLLGKLLLVL-------------GDTRENLE--EAIEGETYEIT--EMYPVFAEVAEEEGFKEA 104 (166)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc-------------ccHHHHHH--HHHccchHHHH--HhChHHHHHHHHcCcHHH
Confidence 45789999999999999999988222 23434443 44445555544 567889999999999999
Q ss_pred HHHHHHHHHhHhhhHhh
Q 016349 280 SNIVARIADEEVAHVAV 296 (391)
Q Consensus 280 a~IL~iI~~DEI~HVa~ 296 (391)
+.-++.+..+|..|-..
T Consensus 105 a~~f~~~~~~Ek~H~~~ 121 (166)
T COG1592 105 ARSFRAAAKAEKRHAEM 121 (166)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999643
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.79 E-value=46 Score=38.69 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCCCCCccc--hhhHHHHHhhhhcH
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAEL-GFKYGDMPAH--DVLWNQCKKSSDNV 245 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eL-G~~YGDlPaH--~gLWe~a~~T~~dl 245 (391)
.||..+-+-.-.+.-+..+. -=+++|. +.|.+|.+|...+.+++++. .-.-.++-.- ..++...... .++
T Consensus 870 ~mE~~g~~FY~~~A~~a~~~---~~K~lF~---~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 942 (1006)
T PRK12775 870 EIELGGMAFYARAAKETSDP---VLKELFL---KFAGMEQEHMATLARRYHAAAPSPTEGFKIERAAIMAGVKGRP-DDP 942 (1006)
T ss_pred HHHHHHHHHHHHHHHHcCCH---HHHHHHH---HHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhcccc-CCH
Confidence 45555554444444333221 1234444 46789999999999998752 1100111000 1111110001 111
Q ss_pred --HHHHhhchhhHhhcCCCCCHHHHHHHHhCCChh-HHHHHHHHHHhHhhhHhh
Q 016349 246 --AARLAVIPLVQEARGLDAGPRLTQKLIGFGDHR-TSNIVARIADEEVAHVAV 296 (391)
Q Consensus 246 --laRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~-sa~IL~iI~~DEI~HVa~ 296 (391)
.-||| |-+|+..+|. +.+..+...|.+ ..++++.|.++|.+|++.
T Consensus 943 ~~al~lA---m~~Ekdai~f---Y~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~ 990 (1006)
T PRK12775 943 GNLFRIA---IEFERRAVKF---FKERVAETPDGSVERQLYKELAAEEREHVAL 990 (1006)
T ss_pred HHHHHHH---HHHHHHHHHH---HHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 22444 6789888874 555555677875 589999999999999875
No 62
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=49.54 E-value=9 Score=33.71 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=60.7
Q ss_pred hHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCC-ch-----HHHHHHHHhcCC-CC
Q 016349 255 VQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRA-PC-----STFKDLLKEYDV-EL 327 (391)
Q Consensus 255 vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~d-p~-----~tf~~lv~~~~~-~l 327 (391)
-.|-.|-|+=-.+.+|+ | ...+...|.++|..|.. .+..+.++.|+. |. ..|.... |.. ..
T Consensus 10 e~Ek~a~~~Y~~~~~k~---~---~~~~F~~la~~E~~H~~----~l~~L~~~~~~~~p~~~~~~~~f~~~~--~~~l~~ 77 (135)
T cd01048 10 EEEKLARDVYLALYEKF---G---GLRPFSNIAESEQRHMD----ALKTLLERYGLPDPVDPFSGGVFTNPQ--YNQLVE 77 (135)
T ss_pred HHHHHHHHHHHHHHHHh---c---CcchHHHHHHHHHHHHH----HHHHHHHHcCCCCCCCccccccccchh--HHHHHH
Confidence 44556666555555555 3 56789999999999997 677777766641 21 1222211 211 12
Q ss_pred CCCCCHHHHHhcCCCc-----ccccchhhhhhhhhcccccchhhHHHHHHHHH
Q 016349 328 KGPFNYSARDEAGIPR-----DWYDPSAAHEQDKNQKHDANNKLSVVYERLAS 375 (391)
Q Consensus 328 k~PFN~eAR~~AGfs~-----~~y~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (391)
.++.+..+=.+.|+.- .+|+.+. ..++.+.++.||.+|+.
T Consensus 78 ~~~~s~~~al~~g~~~E~~~i~~ye~~~--------~~~~d~d~k~v~~~L~~ 122 (135)
T cd01048 78 QGPKSLQDALEVGVLIEELDIADYDRLL--------ERTQNPDIRDVFENLQA 122 (135)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHH--------HhcccHHHHHHHHHHHH
Confidence 4455555555555443 3455554 55566889999999975
No 63
>PF07410 Phage_Gp111: Streptococcus thermophilus bacteriophage Gp111 protein; InterPro: IPR010878 This family consists of several proteins whose function is not known. It is named after the Streptococcus bacteriophage Gp111 protein.
Probab=48.62 E-value=58 Score=28.54 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHh-------hHHHHHHHHHHhCCCCC
Q 016349 173 NAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESR-------HFAWCSQRLAELGFKYG 226 (391)
Q Consensus 173 nAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEar-------HF~Ll~~RL~eLG~~YG 226 (391)
+|=|+|=+++.+|++ --.+||..=|+.|+.++| -|.-+.++|.+.| .|-
T Consensus 3 ~AW~iAK~aa~KFGG----KAkEYfaESLKmAW~~aK~~~tsl~~~~~~~~kl~k~g-~ys 58 (106)
T PF07410_consen 3 NAWEIAKEAAKKFGG----KAKEYFAESLKMAWAMAKGENTSLEDVKAMEGKLRKAG-KYS 58 (106)
T ss_pred hHHHHHHHHHHHhCc----hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcC-cee
Confidence 577888889999986 478999999999999999 5888999999999 554
No 64
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=48.12 E-value=78 Score=30.64 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC
Q 016349 165 HNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK 224 (391)
Q Consensus 165 HaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~ 224 (391)
+.-+-+|+.-|=..+=+.|--.+ .-..+=|.=...|+.||-.|+.|..+-|..+|..
T Consensus 2 q~Ai~lE~atip~YL~a~ySi~~---~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 2 QQAIELELATIPPYLTALYSIKP---GTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBS----TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHHHHHHcccCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44457888888877766665543 3455577888899999999999999999999986
No 65
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=44.40 E-value=22 Score=33.37 Aligned_cols=103 Identities=26% Similarity=0.454 Sum_probs=62.4
Q ss_pred HHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHhhc----------CCCCCHHHHHHHHhCC
Q 016349 206 DESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEAR----------GLDAGPRLTQKLIGFG 275 (391)
Q Consensus 206 DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEAR----------GLDvtP~~i~kl~~~G 275 (391)
+|.-+-.==.+||++|||+-|.+-.-.. .+ -.|+.|-|.|-+|. ||||-.....+|- +
T Consensus 16 ~e~~ri~~ri~rLN~LGFdV~El~~~~~---------~~-g~~~~i~p~Vvd~ghh~rrL~rLTGLdv~E~QArrlL--n 83 (165)
T PF13224_consen 16 DERWRIEERIRRLNELGFDVGELEITTD---------DD-GTRLRIQPKVVDAGHHRRRLLRLTGLDVQENQARRLL--N 83 (165)
T ss_pred hHHHHHHHHHHHHHhcCCceeeeEeEEc---------CC-CCEEEEEeeEeCCcHHHHHHHHHhCCCccHHHHHHHH--H
Confidence 4444444457899999999999865432 11 34777777776654 9999998888876 4
Q ss_pred ChhHHHHHHHHHHhHhhhHhhhhHHHHHHHH----------HcCCCchHHHHHHHHh
Q 016349 276 DHRTSNIVARIADEEVAHVAVGVHWFLSVCQ----------KMKRAPCSTFKDLLKE 322 (391)
Q Consensus 276 D~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~----------~~g~dp~~tf~~lv~~ 322 (391)
|..+-...+ ...++.==.+-.+|+..+-+ ..+++|.+-|++++.+
T Consensus 84 di~~yra~~--~~~~~~~e~aAh~Wl~~vfeP~v~~Ip~~l~~klepAqlfheILeH 138 (165)
T PF13224_consen 84 DIDSYRAQE--DGRDVDEEEAAHDWLTEVFEPTVRAIPRELRGKLEPAQLFHEILEH 138 (165)
T ss_pred HHHHHHhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhhHHHhCCCCHHHHHHHHHHH
Confidence 444322221 01111111233467655433 1257888999998853
No 66
>PRK14983 aldehyde decarbonylase; Provisional
Probab=44.05 E-value=63 Score=31.57 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCc--------cchhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHH
Q 016349 195 GFFADFAHVADDESRHFAWCSQRLAELGFKYGDMP--------AHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPR 266 (391)
Q Consensus 195 ~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlP--------aH~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~ 266 (391)
+.-+++.+.|.=|.||.+=....=+.||+. -|+| +|+.+-.++.+ ..+..=|-|-.+..|+=-+-+-
T Consensus 48 ~~~dEL~rLakME~rH~kgF~aCGrNL~V~-~Dm~fA~~fF~~Lh~nFq~A~~e--gkv~TCLlIQaLiIE~FAIaAY-- 122 (231)
T PRK14983 48 EHAEELTRLAKMEMRHKKGFTACGRNLGVT-PDMPFAKEFFSPLHGNFQKAAAE--GKVVTCLLIQALIIEAFAIAAY-- 122 (231)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHcccCcCC-CCcHHHHHHHHHHHHHHHHHHhc--CCeeehHHHHHHHHHHHHHHHH--
Confidence 456788999999999998777776666665 2554 55554444332 4555555566665555322211
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHH
Q 016349 267 LTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSV 304 (391)
Q Consensus 267 ~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~l 304 (391)
.-...+-|.-+.+|-+-+..||-.|.-+|-.|++.=
T Consensus 123 --niYIpVAD~FARkITegVVkDEY~HLN~Ge~WLk~~ 158 (231)
T PRK14983 123 --NIYIPVADPFARKITEGVVKDEYLHLNFGEEWLKAN 158 (231)
T ss_pred --hhccccccHHHHHHHHhHHhhHHHhcchHHHHHHHH
Confidence 122357788889999999999999999999999763
No 67
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=43.21 E-value=1.2e+02 Score=31.25 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=65.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhchhhHhhc--------------------C
Q 016349 201 AHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEAR--------------------G 260 (391)
Q Consensus 201 l~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvVp~vlEAR--------------------G 260 (391)
...+..|+-|-..|.--+..++.. | ..+++... +...+.+|...|-...+.- +
T Consensus 110 ~~q~~~E~IHs~sYs~il~tl~~~----~--~e~f~~~~-~~~~i~~K~~~i~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 182 (376)
T PRK09101 110 ETWSFSETIHSRSYTHIIRNIVND----P--SVVFDDIV-TNEEILKRAKDISSYYDDLIEMTSYYHLLGEGTHTVNGKT 182 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC----H--HHHHHHHH-hCHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccc
Confidence 456679999999999999998552 2 24666543 4457777777765554431 1
Q ss_pred CCC-CHHHHHH-------------------------HHhCCCh-hHHHHHHHHHHhHhhhHhhhhHHHHHHHH
Q 016349 261 LDA-GPRLTQK-------------------------LIGFGDH-RTSNIVARIADEEVAHVAVGVHWFLSVCQ 306 (391)
Q Consensus 261 LDv-tP~~i~k-------------------------l~~~GD~-~sa~IL~iI~~DEI~HVa~G~rWF~~lC~ 306 (391)
.+. +..+.++ |.+.|-. -++++++-|.+||.-|+.+|..=|+.+..
T Consensus 183 ~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~ 255 (376)
T PRK09101 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLMRS 255 (376)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1111222 2344555 36789999999999999999888888875
No 68
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=42.05 E-value=96 Score=29.61 Aligned_cols=134 Identities=22% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCC-CccchhhHHHH
Q 016349 161 AYMLHNLAHVELNAIDL-AWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGD-MPAHDVLWNQC 238 (391)
Q Consensus 161 a~lLHaiAHIElnAIDL-AwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGD-lPaH~gLWe~a 238 (391)
+-+|=-+|-.|+.|.+. |-|+ ++.+. |. =.....+.|.-|-.||..|.++|.++|.+--+ +--..+-.+..
T Consensus 8 ~~llg~lAy~eL~aF~rLa~da--~~AP~---l~--~r~ala~mAaae~~hf~~L~~~l~~~G~d~~~am~pf~~~ld~f 80 (185)
T PF13794_consen 8 VDLLGVLAYGELAAFERLAEDA--RMAPT---LA--DRIALARMAAAEFGHFERLEARLAERGVDPEEAMEPFVGALDAF 80 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CC-SS---ST--THHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhCcC---HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44666788999999985 7777 56642 32 23467899999999999999999999988431 11122212111
Q ss_pred H-h-hhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHH
Q 016349 239 K-K-SSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQK 307 (391)
Q Consensus 239 ~-~-T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~ 307 (391)
. . +..|-+.+|-=.- |..+ ..-.+..++...=|..+..++..++ +|-+|-.+.+.-++..++.
T Consensus 81 ~~rT~P~dW~E~LvKaY-Vg~g----la~DFy~~va~~L~~~~r~~v~~vl-~~~~~s~f~~~~vraai~a 145 (185)
T PF13794_consen 81 HARTRPSDWLESLVKAY-VGDG----LAADFYREVASGLDPETRALVLDVL-ADTGHSEFAVAEVRAAIAA 145 (185)
T ss_dssp HHTT--SSHHHHHHHHH-HHHH----HHHHHHHHHCCCS-HHHHHHHHHHS---HHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCChHHHHHHHH-HHHh----HHHHHHHHHHhcCCHHHHHHHHHHh-ccccchHHHHHHHHHHHhh
Confidence 1 0 1112233322000 0000 0112333444444555666655554 3467777777777776665
No 69
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=38.87 E-value=1.8e+02 Score=22.35 Aligned_cols=62 Identities=19% Similarity=0.065 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCchHHHHHHHHhcCCCCCCCCCHHHHHhcC
Q 016349 274 FGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPCSTFKDLLKEYDVELKGPFNYSARDEAG 340 (391)
Q Consensus 274 ~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~~tf~~lv~~~~~~lk~PFN~eAR~~AG 340 (391)
+.+.....++..+..||..|.. +|..+....|..|........ ........+.|........
T Consensus 24 ~~~~~~~~~~~~~a~~E~~H~~----~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 85 (130)
T cd00657 24 APDPDLKDELLEIADEERRHAD----ALAERLRELGGTPPLPPAHLL-AAYALPKTSDDPAEALRAA 85 (130)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCCCCHHHHH-HhcccCCCccCHHHHHHHH
Confidence 3478889999999999999985 466666666766543222211 1122334456665555444
No 70
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=38.29 E-value=2.1e+02 Score=23.62 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCCCCccchhhHHHHHhh
Q 016349 162 YMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKS 241 (391)
Q Consensus 162 ~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~YGDlPaH~gLWe~a~~T 241 (391)
-.|..|..++..+|+-.=.++-.-. ..++..-|.+.+.+-.+|..-|..++.++| |+.+-+.+++-.+.++
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~~------~~~lk~~f~~~~~~~~~~~~~L~~~i~~~G---g~p~~~gs~~g~~~r~ 74 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKAE------DPELKSLFQEFAQERQQHAEELQAEIQELG---GEPEESGSFKGALHRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----H----HHCHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcCcccCHHHHHHHH
Confidence 4577788888888877555544443 257778888899999999999999999999 7777777766665555
Q ss_pred hhcH
Q 016349 242 SDNV 245 (391)
Q Consensus 242 ~~dl 245 (391)
--++
T Consensus 75 ~~~i 78 (111)
T PF09537_consen 75 WMDI 78 (111)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 4333
No 71
>PF13668 Ferritin_2: Ferritin-like domain
Probab=36.41 E-value=94 Score=26.63 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 016349 163 MLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAE 220 (391)
Q Consensus 163 lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~e 220 (391)
+|-.-.=+|-.++.....++-++.+ .+...=...++..|++|-.+++..|.+
T Consensus 86 ~L~~A~~~E~~~~~~Y~g~~~~~~~------~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 86 FLRLAYTLEDVGVSAYKGAAPQIED------PELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3434446799999999988888863 357778889999999999999988753
No 72
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=33.09 E-value=2e+02 Score=26.23 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCC
Q 016349 197 FADFAHVADDESRHFAWCSQRLAELGFK 224 (391)
Q Consensus 197 y~Dwl~VA~DEarHF~Ll~~RL~eLG~~ 224 (391)
..=+-+++.++..|+-.+.+||..+|..
T Consensus 57 H~~lee~~~~~~~~~D~iAERi~~lGg~ 84 (162)
T PRK09448 57 HEMLDGFRTALEDHLDTMAERAVQLGGV 84 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCC
Confidence 4445567789999999999999999875
No 73
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=33.06 E-value=1e+02 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCCch
Q 016349 274 FGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRAPC 313 (391)
Q Consensus 274 ~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~dp~ 313 (391)
.++....+++..|-.||..|.. ||..+..+.|.+|.
T Consensus 44 ~~~~~~k~~f~~lA~eE~~H~~----~l~~~i~~lgg~p~ 79 (154)
T cd07908 44 EKYPEIAETFLGIAIVEMHHLE----ILGQLIVLLGGDPR 79 (154)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCc
Confidence 4677889999999999999996 77777777776663
No 74
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=32.23 E-value=75 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=33.3
Q ss_pred HhhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCCC
Q 016349 256 QEARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKRA 311 (391)
Q Consensus 256 lEARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~d 311 (391)
+..+|+.+++.+++..+ ..|+..+- ++.-.+|..|+...+++.++.
T Consensus 18 ~~~~g~~it~~~i~~~A-------~~i~~~~~---~~~f~~s~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 18 QEALGIPISGEQIREKA-------LEILQRLG---LENFKASNGWLTRFKKRHNIV 63 (66)
T ss_pred HHHCCCCCCHHHHHHHH-------HHHHHHcC---CCCCCCCHHHHHHHHHHcCCc
Confidence 56789999999988764 23333332 346789999999999987753
No 75
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=30.59 E-value=44 Score=33.83 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q 016349 200 FAHVADDESRHFAWCSQRLAEL 221 (391)
Q Consensus 200 wl~VA~DEarHF~Ll~~RL~eL 221 (391)
.-++|.||.||+..+.+.++.+
T Consensus 184 ~~~IA~DE~rH~~fy~~~v~~~ 205 (297)
T cd01050 184 LGRIAADEARHEAFYRDIVEAL 205 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999996653
No 76
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=27.71 E-value=4.2e+02 Score=28.60 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhHHHHHHHH-HHhCCCCCCCccchhhHHHHHhhhhcHHHHHhhc---hhhHhhcCCCCC----------
Q 016349 199 DFAHVADDESRHFAWCSQRL-AELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVI---PLVQEARGLDAG---------- 264 (391)
Q Consensus 199 Dwl~VA~DEarHF~Ll~~RL-~eLG~~YGDlPaH~gLWe~a~~T~~dllaRlAvV---p~vlEARGLDvt---------- 264 (391)
-..+|-.||-||.=-+...| +..|. +| ++ .++.|+.|..-- ||+|.|=|....
T Consensus 141 nlfqvnvEEgRHlWaMvyLL~k~FG~--------dG-re----eAe~LL~rrsGd~d~PRiL~AFN~~t~dWlsffmFT~ 207 (471)
T TIGR03225 141 NLFQVNVEEGRHLWAMVYLLHKYFGR--------DG-RE----EAEALLRRRSGDADNPRILGAFNEKTPDWLSFFMFTY 207 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--------cc-HH----HHHHHHHhhcCCCCCcchhhhccCCCccHHHHhHhhe
Confidence 45679999999987777777 55554 34 33 345778887766 599999887643
Q ss_pred ------HHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhh----HHHHHHHHHc
Q 016349 265 ------PRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGV----HWFLSVCQKM 308 (391)
Q Consensus 265 ------P~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~----rWF~~lC~~~ 308 (391)
...+..|++.|=.--+.+....+.||.-|.-+|- |=..+-|+..
T Consensus 208 ftDRdGk~QL~alaeS~FdPLaRt~rfMltEEahHmfvGetGv~rviqrtce~m 261 (471)
T TIGR03225 208 FTDRDGKMQLAALAESGFDPLSRTCRFMLTEEAHHMFVGESGVGRVIERTCQVM 261 (471)
T ss_pred eecccchhhHHHHHhcCCchHhhhhHHHhhhhHhHhhhhhHHHHHHHHHHHHHH
Confidence 3345567777766667788999999999999998 8888888864
No 77
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.49 E-value=3.4e+02 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.3
Q ss_pred cccchhhHHHHHHHHHHHhhhccc
Q 016349 360 HDANNKLSVVYERLASIISMESEN 383 (391)
Q Consensus 360 ~~~~~~~~~~~~~l~~i~~~e~~~ 383 (391)
+...+++..+++-|++|.+-.+.|
T Consensus 123 ~a~~~il~~ffdlL~~Iaa~s~~N 146 (198)
T cd04401 123 PAHASILYDFFDLLSSIAAHSSVN 146 (198)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcc
Confidence 456789999999999999888777
No 78
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=24.65 E-value=2e+02 Score=31.75 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=73.4
Q ss_pred hhhHHHHHhhhhcHHHHHhhchhhHhhcCCCCC----HHHHHHHHhCCChhHHH----HHHHHHHhHhhhHhhhhHHHHH
Q 016349 232 DVLWNQCKKSSDNVAARLAVIPLVQEARGLDAG----PRLTQKLIGFGDHRTSN----IVARIADEEVAHVAVGVHWFLS 303 (391)
Q Consensus 232 ~gLWe~a~~T~~dllaRlAvVp~vlEARGLDvt----P~~i~kl~~~GD~~sa~----IL~iI~~DEI~HVa~G~rWF~~ 303 (391)
-..|.|+..-.+.+- +|+|..-|++|+--- -..++=++..|.+.+++ |+++.++|-+---++|.-=..+
T Consensus 9 wrkwrm~~~~~~~~~---nILp~l~~~~g~~~~~~~Lnal~~WlRrggkk~aA~Rf~Yi~Q~f~~d~~LA~r~~r~L~~w 85 (677)
T COG4389 9 WRKWRMADMKKITPQ---NILPLLSESLGHTDFVNVLNALIKWLRRGGKKCAAERFDYIIQTFKQDRELASRFSRCLYIW 85 (677)
T ss_pred HHHHHHHhhccCCHh---hhhhhcchhhhhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356888777666554 678888899998532 23455666666666665 7788888888888999888888
Q ss_pred HHHHc--------CCCchH-HHHHHHHhcCCCCCCCCCHHHHHhcCCC--------cccccchh
Q 016349 304 VCQKM--------KRAPCS-TFKDLLKEYDVELKGPFNYSARDEAGIP--------RDWYDPSA 350 (391)
Q Consensus 304 lC~~~--------g~dp~~-tf~~lv~~~~~~lk~PFN~eAR~~AGfs--------~~~y~~L~ 350 (391)
+|+.+ |+-.-+ -.+|++++...++.|||-..+-..+=|+ .+|++.|.
T Consensus 86 v~q~~~ypLli~~Gi~sR~GF~rE~~~RLyeR~~Ps~kd~~~L~~~F~~LF~~E~DA~Wlq~l~ 149 (677)
T COG4389 86 LAQIHIYPLLIKLGIFSRHGFAREMGIRLYERFSPSYKDFANLGEVFLYLFHSENDAKWLQTLN 149 (677)
T ss_pred HHhcCchhHHHhcCcccchhhHHHHHHHHHHhcCCCCCChhhHHHHHHHhhhccchhHHHHHhh
Confidence 88753 222222 2344544433355666655555555443 36777775
No 79
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=24.32 E-value=84 Score=27.07 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--hhhcCCCcccchhHHHHHHHH-HHHHHHhhHHHHHHHHHHhC
Q 016349 160 NAYMLHNLAHVELNAIDLAWDT--VVRFSPFTDILEDGFFADFAH-VADDESRHFAWCSQRLAELG 222 (391)
Q Consensus 160 ra~lLHaiAHIElnAIDLAwD~--v~RF~~~~~~lP~~Fy~Dwl~-VA~DEarHF~Ll~~RL~eLG 222 (391)
.-.+-.++.|-+..+|+.--++ +++-- ...=..||++ .+.||.+|..++.+.|..|+
T Consensus 75 ~~~l~~~~~~E~~e~~~~y~~~~~~A~~e------~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l~ 134 (134)
T cd01041 75 LENLKAAIAGETYEYTEMYPEFAEVAEEE------GFKEAARSFEAIAEAEKVHAERYKKALENLE 134 (134)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445666666655566653322 22221 1122344554 88999999999999988763
No 80
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=24.06 E-value=6.2e+02 Score=23.94 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHH-HHHHHHhhHHHHHHHHHHhCCC--CCCCccch-----
Q 016349 161 AYMLHNLAHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAH-VADDESRHFAWCSQRLAELGFK--YGDMPAHD----- 232 (391)
Q Consensus 161 a~lLHaiAHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~-VA~DEarHF~Ll~~RL~eLG~~--YGDlPaH~----- 232 (391)
+.+|-.=-|.||+|-++.+.+.+=|.. .....+..|++ .|.||--|...+-+.|.+-|.. .|.+.+-+
T Consensus 7 ~~~LN~Q~N~E~yas~lYl~maa~~~~----~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~~~s 82 (167)
T COG1528 7 IELLNEQMNLEFYASNLYLQMAAWCSS----ESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNKFSS 82 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccccCC
Confidence 445556668999999999888777764 24466777765 5889999999999999999875 66665543
Q ss_pred --hhHHHHHhhhhcHHHHHhhchhhHhhcCCCCCHHHHHHHHhCCChhHHHHHH
Q 016349 233 --VLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKLIGFGDHRTSNIVA 284 (391)
Q Consensus 233 --gLWe~a~~T~~dllaRlAvVp~vlEARGLDvtP~~i~kl~~~GD~~sa~IL~ 284 (391)
.+++.+.+...-+...+. .+.+.-...+|..+..-|+
T Consensus 83 ~~e~f~~tlehEq~vt~~I~---------------~L~~~a~~~kD~~T~nFLq 121 (167)
T COG1528 83 LKELFEKTLEHEQKVTSSIN---------------ELAEVAREEKDYATFNFLQ 121 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHcCchhHHHHHH
Confidence 344444444333333332 2334445667777777664
No 81
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=22.57 E-value=67 Score=23.76 Aligned_cols=47 Identities=6% Similarity=0.119 Sum_probs=26.4
Q ss_pred hhcCCCCCHHHHHHHHhCCChhHHHHHHHHHHhHhhhHhhhhHHHHHHHHHcCC
Q 016349 257 EARGLDAGPRLTQKLIGFGDHRTSNIVARIADEEVAHVAVGVHWFLSVCQKMKR 310 (391)
Q Consensus 257 EARGLDvtP~~i~kl~~~GD~~sa~IL~iI~~DEI~HVa~G~rWF~~lC~~~g~ 310 (391)
+.+|..+|..++.... ..|.+........--.+|..|+...+++.++
T Consensus 16 ~~~g~~vt~~~i~~~A-------~~i~~~~~~~~~~~~~~s~~W~~~F~~Rh~i 62 (66)
T PF03221_consen 16 RRKGFPVTREMIREKA-------KEIAELAKSPGPPEFKASKGWLDRFKKRHGI 62 (66)
T ss_dssp CGCT---SCHHHHHHH-------HHHHH-SCCCT-TT-S--CHHHHHHHHHTS-
T ss_pred HHcCCCCCHHHHHHHH-------HHHHHhhcccccCcCCcccHHHHHHHHHcCC
Confidence 6788888888887654 2233222445567788999999999888764
No 82
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.24 E-value=1.9e+02 Score=25.32 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCCCCC-ccchhhHHH
Q 016349 193 EDGFFADFAHVADDESRHFAWCSQRLAEL-GFKYGDM-PAHDVLWNQ 237 (391)
Q Consensus 193 P~~Fy~Dwl~VA~DEarHF~Ll~~RL~eL-G~~YGDl-PaH~gLWe~ 237 (391)
..+-|.+|+.-..|+----. +..||..| -..+||. ||..|.||.
T Consensus 8 ~~d~F~~W~~kLkD~~Aka~-I~~Rl~rl~~GN~GD~kpvgeGV~EL 53 (100)
T COG3657 8 GTDTFSEWLKKLKDRRAKAK-IAARLDRLALGNFGDVKPVGEGVSEL 53 (100)
T ss_pred chHHHHHHHHHHHhHHHHHH-HHHHHHHHhcCCCcCccccccchhhh
Confidence 45779999999888754444 45555554 4579997 999999986
No 83
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=20.89 E-value=72 Score=33.02 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCcc
Q 016349 168 AHVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPA 230 (391)
Q Consensus 168 AHIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPa 230 (391)
.--||+--=|.=.+.=|..+....+ .+. +.=.|-|||||-..|++-|.+.|.. .|-|.-
T Consensus 82 cTaEFSGflLYKEl~rrlk~~~P~l-ae~---F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk 142 (337)
T TIGR02029 82 CTSEFSGFLLYKELSRRLKNRDPVV-AEL---FQLMARDEARHAGFLNKALGDFGLALDLGFLTK 142 (337)
T ss_pred hhhhhhhhHHHHHHHHhcCCCChHH-HHH---HHHHhhhhHHHhhhHHHHHHHcCcccchhhhcc
Confidence 3446666555444444554321112 122 3346889999999999999998764 444443
No 84
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.76 E-value=74 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCccc
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPAH 231 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPaH 231 (391)
--||+--=|.=.+.=|..+.+..+ -.-+.=.|-|||||-..|++-|.+.|.. .|-|.-.
T Consensus 89 TaEFSGflLYKEl~rrlk~~nP~l----ae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~ 149 (351)
T CHL00185 89 TAEFSGFLLYKELSRKLKDKNPLL----AEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKS 149 (351)
T ss_pred hhhhhhhHHHHHHHHHhccCCcHH----HHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccC
Confidence 346665544444444553322222 2223346889999999999999998764 4544433
No 85
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=20.57 E-value=74 Score=32.79 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK 224 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~ 224 (391)
--||+--=|.=.+.=|-.+.+..+- .-+.=.|-|||||-..|++-|.+.|..
T Consensus 73 taEFSGflLYKEl~rrlk~~nP~la----e~F~lMaRDEARHAGFlNkam~df~l~ 124 (323)
T cd01047 73 TSEFSGFLLYKELGRRLKNTNPVVA----ELFRLMARDEARHAGFLNKALSDFNLA 124 (323)
T ss_pred hhhhhhHHHHHHHHHHcccCCcHHH----HHHHHHhhhHHHHhhhHHHHHHHcCcc
Confidence 3466655444444444433222221 223346889999999999999998764
No 86
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.43 E-value=76 Score=33.10 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC--CCCCcc
Q 016349 169 HVELNAIDLAWDTVVRFSPFTDILEDGFFADFAHVADDESRHFAWCSQRLAELGFK--YGDMPA 230 (391)
Q Consensus 169 HIElnAIDLAwD~v~RF~~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~RL~eLG~~--YGDlPa 230 (391)
--||+--=|.=.+.=|..+.+..+ -.-+.=.|-|||||-..|++-|.+.|.. .|-|.-
T Consensus 93 taEFSGflLYKEl~rrlk~~nP~l----ae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk 152 (355)
T PRK13654 93 TAEFSGFLLYKELSRRLKDRNPLL----AELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTK 152 (355)
T ss_pred hhhhhhHHHHHHHHHhccccCcHH----HHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhcc
Confidence 346665544444444443221112 2223346889999999999999998764 444443
No 87
>PLN02673 quinolinate synthetase A
Probab=20.19 E-value=3.6e+02 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.016 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 016349 86 IDSASSLAELGSLVLSTSDPLSKSKLSHLAFS 117 (391)
Q Consensus 86 ~~~~~sL~~~A~~vL~t~dp~~K~~lt~~~~~ 117 (391)
...|.+|.+.....-..+|.++|.++.-++..
T Consensus 79 e~lP~kl~eIveeF~~l~dWEeRYr~LIeLGK 110 (724)
T PLN02673 79 ELVPCKLQRLIKEFKSLTEPVDRVKRLLHYAS 110 (724)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 36678899999999999999999887555444
No 88
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=20.17 E-value=1.2e+02 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHHhCCCCC
Q 016349 207 ESRHFAWCSQRLAELGFKYG 226 (391)
Q Consensus 207 EarHF~Ll~~RL~eLG~~YG 226 (391)
|..|..|+++.|+++|.+-.
T Consensus 15 ~~~H~~Lf~~~L~~~Gi~~~ 34 (106)
T PF14518_consen 15 ERSHPELFRRFLRALGIDDE 34 (106)
T ss_dssp GG-HHHHHHHHHHHTT----
T ss_pred cccHHHHHHHHHHHcCCCCc
Confidence 34899999999999999855
Done!