Query 016350
Match_columns 391
No_of_seqs 369 out of 1419
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 12:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-34 3.7E-39 270.6 30.3 325 46-374 7-365 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.1E-34 3.8E-39 266.5 22.3 295 48-374 23-348 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 4.8E-34 1.6E-38 263.2 12.4 309 47-370 24-340 (451)
4 2gfp_A EMRD, multidrug resista 100.0 4.6E-31 1.6E-35 237.4 11.4 261 54-350 3-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 9.3E-28 3.2E-32 223.7 23.4 314 55-371 17-374 (491)
6 2cfq_A Lactose permease; trans 99.9 3.8E-25 1.3E-29 201.4 4.9 285 57-369 13-307 (417)
7 2xut_A Proton/peptide symporte 99.9 9.6E-23 3.3E-27 191.3 15.8 166 59-227 20-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 4.6E-15 1.6E-19 136.2 15.8 174 52-228 253-433 (451)
9 4gc0_A D-xylose-proton symport 99.6 1.1E-14 3.9E-19 135.2 12.5 174 60-243 286-472 (491)
10 2cfq_A Lactose permease; trans 99.5 6.5E-14 2.2E-18 127.2 10.3 140 91-231 262-403 (417)
11 3o7q_A L-fucose-proton symport 99.5 1.1E-13 3.7E-18 126.6 10.2 162 58-224 265-428 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.4 1E-12 3.5E-17 122.0 13.5 159 65-227 297-470 (491)
13 2gfp_A EMRD, multidrug resista 99.2 4.5E-12 1.5E-16 113.4 2.5 156 53-214 201-362 (375)
14 2xut_A Proton/peptide symporte 99.0 1.6E-09 5.5E-14 101.3 10.3 136 91-226 338-500 (524)
15 2g9p_A Antimicrobial peptide l 57.3 4.9 0.00017 18.4 1.1 14 107-120 2-15 (26)
16 3v5u_A Uncharacterized membran 30.8 2.4E+02 0.0081 23.8 8.4 61 56-120 168-228 (320)
17 4dve_A Biotin transporter BIOY 30.3 1E+02 0.0036 23.8 5.6 25 94-118 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.1e-34 Score=270.56 Aligned_cols=325 Identities=28% Similarity=0.449 Sum_probs=249.7
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCc------chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 016350 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119 (391)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 119 (391)
.+..+...++.+++.++.+++..+++..+|.+.++++.+. ++...|++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3444555666778889999999999999999999885432 2234589999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHH------------------hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH
Q 016350 120 AFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181 (391)
Q Consensus 120 ~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 181 (391)
+++++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc-------chhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCC
Q 016350 182 IQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG 254 (391)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~l~~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 254 (391)
.+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..++.||+|+|+..+++.+++.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 99999999999988876554321 23899999988888888888899999999999999999988887776543
Q ss_pred CCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh---hHHHHHHH
Q 016350 255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVG 331 (391)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 331 (391)
+...++..+..+.....+ +.......++. +..........+..+...+.+..|.+...+..+... .......+
T Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGR-KTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTHHHHSCC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhh-hhhhHHHHhcc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 322222222111111000 01111112222 233344444555556666777778777776655543 23556678
Q ss_pred HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (391)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
+...++.++++++.||+|||+.+..+...+.++++.+......
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999888888887776654433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.1e-34 Score=266.52 Aligned_cols=295 Identities=13% Similarity=0.116 Sum_probs=242.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (391)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 127 (391)
+++..+..+++..+..++......+.+|.+.+++|++.++. |++.+++.+++.++++++|+++||+|||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556667777788888888899999999999999988877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc-cc
Q 016350 128 MIIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EI 203 (391)
Q Consensus 128 ~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~ 203 (391)
.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999988 65
Q ss_pred cch------------------------hHHHHHHHHHHHHHHHHHhhc--cccchhHHHHcCCHHHHHHHHHHHhCCCCc
Q 016350 204 AGW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257 (391)
Q Consensus 204 ~~~------------------------w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (391)
.+. ||+.|++.+...++..+..++ .||+++. .++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~---------------- 240 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHS---------------- 240 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CCC----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----ccc----------------
Confidence 554 899998776666655444433 3444321 000
Q ss_pred hhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHh-HHHHHhhcCCChhHHHHHHHHHHHH
Q 016350 258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLL 336 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (391)
++++.....++++++++|.++...+..++..........+.+.| ..+.++.+....+.......++..+
T Consensus 241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 01112223456678888999988888777777776666777777 6665566555677888888999999
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (391)
Q Consensus 337 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
+.++.+++.||++||+.+.++..+..++++++.+.++.
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999888888887777665443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.8e-34 Score=263.25 Aligned_cols=309 Identities=13% Similarity=0.050 Sum_probs=236.5
Q ss_pred chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 126 (391)
+.+++.+..++++.+...++.....+.+|.+.+++ .+.++. |++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34566777888888999999999999999999999 888877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350 127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (391)
Q Consensus 127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 202 (391)
+.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ccchhHHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhc
Q 016350 203 IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (391)
Q Consensus 203 ~~~~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
..+.||+.|++.++..++..+ ..+++||+|+....+++++... ..+. +...+.+++........+++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-----------DYPD-DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-----------C--------------CCTHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-----------cccc-cchhhhhcccccccchHHHH
Confidence 554389999998877766544 4466788765321111110000 0000 00000000111111124667
Q ss_pred ccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHH
Q 016350 282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF 359 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~ 359 (391)
+++|.++...+..++..+.......+.+.|+.+.++.+....+.......++.+++.++.+++.||+ +||+.+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 8888888887777777766666555666666544444444467788888999999999999999999 99988887776
Q ss_pred HHH-HHHHHHHH
Q 016350 360 SMA-VSMAIQVA 370 (391)
Q Consensus 360 ~~~-~~~~~~~~ 370 (391)
+.. ++++++.+
T Consensus 329 ~~~~~~~~~~~~ 340 (451)
T 1pw4_A 329 TLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 665 55554443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=4.6e-31 Score=237.41 Aligned_cols=261 Identities=14% Similarity=0.133 Sum_probs=224.6
Q ss_pred HHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH
Q 016350 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (391)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (391)
.++++..+...+......+.+|.+.+++|.+.++. +++.+++.++..+++++.|+++||+|||+++..+..+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45666778888888889999999999999988877 8999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (391)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~ 213 (391)
+.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 9999998
Q ss_pred HHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (391)
Q Consensus 214 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (391)
.++..++..+ ..+++||+++.. + ++++...++++++++|.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---A------------------------------PRTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---C------------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---c------------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence 8887777665 445677764310 0 00112334667788888888888
Q ss_pred HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 016350 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (391)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (391)
..++..........+.+.|..+.++.+....+.......++.+++.++.+++.||.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777767778888888777777777888888899999999999999999887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=9.3e-28 Score=223.67 Aligned_cols=314 Identities=14% Similarity=0.106 Sum_probs=208.3
Q ss_pred HHHHHHHHhhhhhhcccchHH-HhHhh-----hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHH
Q 016350 55 VATLSSFLFGYHLGVVNEPLE-SISLD-----LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP 127 (391)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~-----~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~ 127 (391)
.+.+..+...+......+.++ .+.++ +|.+.++. +++.+++.++..++++++|+++|| +|||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 334444444444433333333 44444 89887776 899999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccc--cchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350 128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (391)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 205 (391)
.+++.+++++++|++.++++|+++|++.+...+...++++|++|+++ |++++++++.+..+|..++|.+++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999988 7778888999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc-ccch----hHHHHcCCHHHHHHHHHH----------------HhCCCCchhHHHH-
Q 016350 206 WWRICFWVSIVPAAILCLAMVFC-AESP----HWLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE- 263 (391)
Q Consensus 206 ~w~~~f~~~~~~~~~~~~~~~~~-~e~~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~- 263 (391)
||+.|++.++..++..+..++. ++.. +....+.+.++.++..+. ..+..........
T Consensus 175 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (491)
T 4aps_A 175 -YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL 253 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh
Confidence 9999999877666655544332 2211 000011122222222221 0111100000000
Q ss_pred --------hhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHH
Q 016350 264 --------LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335 (391)
Q Consensus 264 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
........+.......+..+........+...+...........++.|.++..+.+....+.......++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4aps_A 254 TIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIM 333 (491)
T ss_dssp HHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHH
Confidence 000000000000001111112223444445555555555556677777777666665667888888889999
Q ss_pred HHHHHHHHHHhhhCchHHHH-----HHHHHHHHHHHHHHHH
Q 016350 336 LGSVVAMVLMDKLGRKALLQ-----WSFFSMAVSMAIQVAA 371 (391)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~ 371 (391)
++.++.+++.||++||+... .+..+.+++++++...
T Consensus 334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886544 6777777776666654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=3.8e-25 Score=201.44 Aligned_cols=285 Identities=15% Similarity=0.074 Sum_probs=180.0
Q ss_pred HHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH---
Q 016350 57 TLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--- 132 (391)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--- 132 (391)
....+..........+.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||++++.+..+.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~ 90 (417)
T 2cfq_A 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33334444445555677776 455689988877 999999999999999999999999999999998887765532
Q ss_pred HHHHhhhhHH-HHHHHHHHhhhccchhhHHHHHHHhhcCCc--cccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350 133 SISATTRNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (391)
Q Consensus 133 ~~~~~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~ 209 (391)
...++++... .+...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+. + ||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~ 168 (417)
T 2cfq_A 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQF 168 (417)
T ss_dssp HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhH
Confidence 2223333221 234567777776666554444444444433 4567777777777888999999999888763 5 899
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhH
Q 016350 210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (391)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (391)
.|++.++..++..+..++.+|+++. +.+.++ . +.+++++....++++++++|.++.
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 224 (417)
T 2cfq_A 169 VFWLGSGCALILAVLLFFAKTDAPS---SATVAN----------A-----------VGANHSAFSLKLALELFRQPKLWF 224 (417)
T ss_dssp HHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS----------S-----------SSSCCCCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCccccc---cccccc----------c-----------cccccccccHHHHHHHhcCCchhh
Confidence 9988776655555555554443310 000000 0 000001111223456777888776
Q ss_pred HHHHHHHHHHHhhhchhhHHHhHHHHHhh---cCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350 290 VFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (391)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 366 (391)
..+..+...........+.+.|.++.++. .....+.......++.+++.++.++++||++||+++..+..+.+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 65544443333333334456666543321 122235566677778889999999999999999998888777777655
Q ss_pred HHH
Q 016350 367 IQV 369 (391)
Q Consensus 367 ~~~ 369 (391)
++.
T Consensus 305 ~~~ 307 (417)
T 2cfq_A 305 GSS 307 (417)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=9.6e-23 Score=191.34 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=141.7
Q ss_pred HHHHhhhhhhcccchHH-HhHhhhc------cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHhhHHHHH
Q 016350 59 SSFLFGYHLGVVNEPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMII 130 (391)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i 130 (391)
..+...+......+.++ .+.+++| .+..+. +++.+++.++..++.+++|+++||+ |||+++..+.++.++
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33444444433344444 4667888 887777 8999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH---HHHHHHHHHHHHHHhccccccccch
Q 016350 131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGW 206 (391)
Q Consensus 131 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~ 206 (391)
+.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+. .+.+..+|..++|.+++.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g- 176 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG- 176 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 999999999 999999999999999999999999999999999999877666 889999999999999999988778
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 016350 207 WRICFWVSIVPAAILCLAMVF 227 (391)
Q Consensus 207 w~~~f~~~~~~~~~~~~~~~~ 227 (391)
||+.|++.++..++..+..++
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887776665555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.63 E-value=4.6e-15 Score=136.23 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhHHHHHhhHHH
Q 016350 52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPM 128 (391)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~ 128 (391)
.+....+..+.............|.+.++ +|.+..+. +++.+.+.++..++.++.|++.||+ |||+.+..+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 34444455555555555566677877776 88877766 8999999999999999999999999 9999988887776
Q ss_pred H-HHHHHHHhh--hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhcccccccc
Q 016350 129 I-IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIA 204 (391)
Q Consensus 129 ~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~ 204 (391)
. ++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 331 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 666666665 36778888889999999999888899999999999999999999999999 9999999999999888
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Q 016350 205 GWWRICFWVSIVPAAILCLAMVFC 228 (391)
Q Consensus 205 ~~w~~~f~~~~~~~~~~~~~~~~~ 228 (391)
+ |+..|++.++..++..+..+++
T Consensus 411 g-~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 G-WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999998887777766655443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.57 E-value=1.1e-14 Score=135.21 Aligned_cols=174 Identities=20% Similarity=0.137 Sum_probs=119.7
Q ss_pred HHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh
Q 016350 60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR 139 (391)
Q Consensus 60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 139 (391)
.+........+....|.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 33333344444556677888877665544 4556667788889999999999999999999999888888777655431
Q ss_pred -----hHHHHH-HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc------chh
Q 016350 140 -----NLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------GWW 207 (391)
Q Consensus 140 -----~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~w 207 (391)
+...++ +.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. + +
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~ 441 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-N 441 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-T
T ss_pred hcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Confidence 222222 22222333322 34567789999999999999999999999999988887776654422 2 4
Q ss_pred HHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHH
Q 016350 208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAE 243 (391)
Q Consensus 208 ~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~ 243 (391)
.+.|++.++++++..+ .++++||+ ++++.|
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PET------kg~tLe 472 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPET------KGKTLE 472 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCC------TTCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHheecCC------CCCCHH
Confidence 4567776666666554 45779999 666554
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=6.5e-14 Score=127.25 Aligned_cols=140 Identities=13% Similarity=-0.002 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 016350 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (391)
Q Consensus 91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 170 (391)
++..++..++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 67777888888899999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CccccchHHHH-HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh-hccccc
Q 016350 171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAES 231 (391)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e~ 231 (391)
|++.|+++.+. ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+.. .+.+|+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999998 478888999999999999888777 7888888777777665554 445554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=1.1e-13 Score=126.61 Aligned_cols=162 Identities=14% Similarity=0.037 Sum_probs=126.1
Q ss_pred HHHHHhhhhhhcccchHHHh-Hhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350 58 LSSFLFGYHLGVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (391)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (391)
+..+.............|.+ .++ +|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33333333344444556655 555 48877766 899999999999999999999999999999999999999999888
Q ss_pred HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH
Q 016350 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (391)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~ 215 (391)
.+.++...++.. ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+.++..|++.+
T Consensus 343 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 343 AFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp HHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred HHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 888887665544 8889999999999999999999866 888888877 5568999999999999887664677777655
Q ss_pred HHHHHHHHH
Q 016350 216 VPAAILCLA 224 (391)
Q Consensus 216 ~~~~~~~~~ 224 (391)
+..++..+.
T Consensus 420 ~~~~~~~~~ 428 (438)
T 3o7q_A 420 LCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.43 E-value=1e-12 Score=122.04 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=119.5
Q ss_pred hhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH-----HhhHHHHHHHHHHHhh
Q 016350 65 YHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATT 138 (391)
Q Consensus 65 ~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~ 138 (391)
.........+|.+.++ ++.+..+. ++..+...++..++.++.|++.||+|||+... .+.++.+++.++.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555444 56554444 67788888888999999999999999987655 6777777776666654
Q ss_pred h---------hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350 139 R---------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (391)
Q Consensus 139 ~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~ 209 (391)
. +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~ 452 (491)
T 4aps_A 375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVA 452 (491)
T ss_dssp HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTH
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH
Confidence 3 66778888899999999988999999999999999999999999999999999999999887654 456
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 016350 210 CFWVSIVPAAILCLAMVF 227 (391)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~ 227 (391)
.|.+.+...++..+..++
T Consensus 453 ~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 453 YFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 676666666555444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=4.5e-12 Score=113.37 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH-HHH
Q 016350 53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MII 130 (391)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i 130 (391)
+....+..+.............|.+.++ +|.+..+. +++.+...++..++.++.+++.||+|+|.. .+..+ ...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~ 276 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3344444444444444455566665555 78876665 899999999999999999999999998432 22222 222
Q ss_pred HHH--HHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350 131 GAS--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (391)
Q Consensus 131 ~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 206 (391)
+.. .... .++.+.+++.-++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~- 354 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ- 354 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 221 2222 2467777788899999999999999999999998 889999999999999999999999988877655
Q ss_pred hHHHHHHH
Q 016350 207 WRICFWVS 214 (391)
Q Consensus 207 w~~~f~~~ 214 (391)
|+..+.+.
T Consensus 355 ~~~~~~~~ 362 (375)
T 2gfp_A 355 GSLGLLMT 362 (375)
T ss_dssp HHHHHHHH
T ss_pred ccHHHHHH
Confidence 77776654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.98 E-value=1.6e-09 Score=101.32 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----hcchh----hHHHHHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHhhh
Q 016350 91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT 153 (391)
Q Consensus 91 ~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~ 153 (391)
+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 5666666677777777776654 55543 356777888888887777664 366778888999999
Q ss_pred ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc-hh---------HHHHHHHHHHHHHHHH
Q 016350 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL 223 (391)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w---------~~~f~~~~~~~~~~~~ 223 (391)
+.+...+....++.|..|+++|++++|+.+....+|..+++.+.+.+.+..+ .| +..|++.+...++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876421 13 3336665555555544
Q ss_pred Hhh
Q 016350 224 AMV 226 (391)
Q Consensus 224 ~~~ 226 (391)
..+
T Consensus 498 ~~~ 500 (524)
T 2xut_A 498 VFA 500 (524)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.31 E-value=4.9 Score=18.40 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.1
Q ss_pred HHHHhhhcchhhHH
Q 016350 107 LSGWIADGVGRRRA 120 (391)
Q Consensus 107 ~~g~l~dr~Grr~~ 120 (391)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788999999864
No 16
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=30.75 E-value=2.4e+02 Score=23.79 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=32.2
Q ss_pred HHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 016350 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (391)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 120 (391)
+..+..........+......+.+.+|+++.-. |+. +..++...--.+....+-|-|+...
T Consensus 168 l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~i--Glt--lva~gtslPE~~~sv~aa~~g~~~l 228 (320)
T 3v5u_A 168 LIIGLIGVLVGAELFVDGAKKIALALDISDKVI--GFT--LVAFGTSLPELMVSLAAAKRNLGGM 228 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH--HHH--THHHHHTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHhCCchHHH--HHH--HHHHHhccHHHHHHHHHHHcCCCcH
Confidence 333333444444555667788999999986654 432 2233433333444444445555443
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.33 E-value=1e+02 Score=23.85 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhh
Q 016350 94 VSMCLGGAFIGSTLSGWIADGVGRR 118 (391)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~dr~Grr 118 (391)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888899999999999987644
Done!