Query 016351
Match_columns 391
No_of_seqs 366 out of 3349
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 3.1E-61 6.8E-66 441.8 28.4 312 38-376 20-332 (346)
2 KOG1500 Protein arginine N-met 100.0 1.3E-50 2.8E-55 364.5 20.0 317 36-375 135-451 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 4.7E-45 1E-49 357.2 23.3 275 54-375 154-448 (448)
4 KOG0822 Protein kinase inhibit 100.0 1.1E-32 2.3E-37 262.1 18.2 289 55-390 337-647 (649)
5 PTZ00357 methyltransferase; Pr 99.9 2.4E-26 5.3E-31 224.3 20.9 292 56-377 645-1040(1072)
6 KOG1501 Arginine N-methyltrans 99.9 5.1E-23 1.1E-27 192.0 17.6 292 52-377 34-354 (636)
7 COG2226 UbiE Methylase involve 99.8 5.4E-18 1.2E-22 152.0 14.1 141 39-183 12-155 (238)
8 PF12847 Methyltransf_18: Meth 99.7 7.4E-17 1.6E-21 129.6 12.2 107 78-184 1-111 (112)
9 PF01209 Ubie_methyltran: ubiE 99.7 3E-17 6.5E-22 148.6 9.8 142 38-183 7-152 (233)
10 PLN02233 ubiquinone biosynthes 99.7 1.9E-15 4.1E-20 139.8 14.7 144 38-184 33-182 (261)
11 COG2227 UbiG 2-polyprenyl-3-me 99.6 9.1E-16 2E-20 135.3 8.8 104 77-187 58-164 (243)
12 PF03848 TehB: Tellurite resis 99.6 5.1E-15 1.1E-19 128.7 12.3 110 70-183 22-132 (192)
13 PLN02396 hexaprenyldihydroxybe 99.6 1.5E-14 3.3E-19 136.7 16.2 105 77-185 130-236 (322)
14 TIGR02752 MenG_heptapren 2-hep 99.6 1.5E-14 3.2E-19 131.7 15.1 140 40-183 7-150 (231)
15 PRK11207 tellurite resistance 99.6 7.8E-15 1.7E-19 130.1 12.6 106 74-182 26-132 (197)
16 TIGR00138 gidB 16S rRNA methyl 99.6 1.4E-14 3.1E-19 126.3 13.0 100 77-184 41-142 (181)
17 TIGR00477 tehB tellurite resis 99.6 1.2E-14 2.6E-19 128.7 11.9 107 72-182 24-131 (195)
18 PF13847 Methyltransf_31: Meth 99.6 2E-14 4.3E-19 122.2 12.2 105 78-186 3-112 (152)
19 PRK00107 gidB 16S rRNA methylt 99.6 3.4E-14 7.4E-19 124.3 13.4 100 78-185 45-146 (187)
20 COG4076 Predicted RNA methylas 99.6 5.1E-15 1.1E-19 124.4 6.4 136 52-195 10-146 (252)
21 PF06325 PrmA: Ribosomal prote 99.6 2.4E-14 5.1E-19 133.2 11.6 106 67-183 152-258 (295)
22 PF05175 MTS: Methyltransferas 99.6 8.9E-14 1.9E-18 120.4 14.2 104 78-182 31-138 (170)
23 PLN02244 tocopherol O-methyltr 99.6 8.9E-14 1.9E-18 133.5 15.4 104 77-184 117-223 (340)
24 PF02353 CMAS: Mycolic acid cy 99.6 6.3E-14 1.4E-18 129.8 13.8 116 68-187 52-169 (273)
25 PF08241 Methyltransf_11: Meth 99.5 3.4E-14 7.3E-19 110.1 9.9 93 83-182 1-95 (95)
26 COG2264 PrmA Ribosomal protein 99.5 2.5E-14 5.5E-19 131.7 10.6 109 68-184 154-263 (300)
27 KOG1270 Methyltransferases [Co 99.5 1.8E-14 3.9E-19 127.9 7.8 121 58-185 62-196 (282)
28 PRK11036 putative S-adenosyl-L 99.5 8.5E-14 1.9E-18 128.6 12.6 103 77-183 43-148 (255)
29 KOG1540 Ubiquinone biosynthesi 99.5 2.3E-13 4.9E-18 120.2 14.5 135 41-181 63-211 (296)
30 PRK15068 tRNA mo(5)U34 methylt 99.5 1.3E-13 2.9E-18 131.1 13.9 112 69-183 113-225 (322)
31 COG2230 Cfa Cyclopropane fatty 99.5 9.8E-14 2.1E-18 126.8 12.3 115 68-186 62-178 (283)
32 PRK12335 tellurite resistance 99.5 1.5E-13 3.2E-18 129.2 11.8 102 77-182 119-221 (287)
33 TIGR00452 methyltransferase, p 99.5 2.9E-13 6.2E-18 127.5 13.7 114 68-184 111-225 (314)
34 COG4123 Predicted O-methyltran 99.5 1.6E-13 3.5E-18 123.2 10.3 107 77-183 43-169 (248)
35 PRK00216 ubiE ubiquinone/menaq 99.5 6.9E-13 1.5E-17 121.0 13.9 143 37-183 10-157 (239)
36 PF05401 NodS: Nodulation prot 99.5 2.8E-13 6.1E-18 116.5 10.1 109 73-185 38-147 (201)
37 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.1E-13 6.7E-18 124.2 10.9 106 77-184 55-164 (247)
38 PF13659 Methyltransf_26: Meth 99.5 3.5E-13 7.6E-18 109.1 9.3 105 79-183 1-114 (117)
39 TIGR02469 CbiT precorrin-6Y C5 99.4 2.3E-12 4.9E-17 105.1 13.7 107 72-185 13-123 (124)
40 PRK15001 SAM-dependent 23S rib 99.4 1.1E-12 2.5E-17 126.2 13.2 114 70-183 220-339 (378)
41 TIGR00406 prmA ribosomal prote 99.4 1.5E-12 3.2E-17 122.3 13.7 101 77-184 158-259 (288)
42 PF13649 Methyltransf_25: Meth 99.4 2.9E-13 6.2E-18 106.7 7.4 93 82-178 1-101 (101)
43 PRK10258 biotin biosynthesis p 99.4 1.1E-12 2.3E-17 121.0 12.3 106 68-183 32-139 (251)
44 TIGR00740 methyltransferase, p 99.4 1.3E-12 2.8E-17 119.6 11.9 105 78-184 53-161 (239)
45 PTZ00098 phosphoethanolamine N 99.4 1.2E-12 2.6E-17 121.3 11.5 112 70-185 44-157 (263)
46 TIGR00537 hemK_rel_arch HemK-r 99.4 1.8E-12 3.9E-17 113.2 11.9 104 77-184 18-140 (179)
47 PRK14103 trans-aconitate 2-met 99.4 1.4E-12 3E-17 120.5 11.2 103 70-183 21-125 (255)
48 PRK13944 protein-L-isoaspartat 99.4 3.5E-12 7.5E-17 113.9 13.4 108 67-183 61-172 (205)
49 smart00828 PKS_MT Methyltransf 99.4 1.5E-12 3.2E-17 117.9 11.0 102 80-184 1-104 (224)
50 PRK14967 putative methyltransf 99.4 3.6E-12 7.8E-17 115.4 13.5 105 76-183 34-158 (223)
51 PRK08287 cobalt-precorrin-6Y C 99.4 5.6E-12 1.2E-16 110.9 14.2 104 72-183 25-130 (187)
52 PLN02490 MPBQ/MSBQ methyltrans 99.4 3E-12 6.6E-17 121.5 13.2 131 43-182 79-213 (340)
53 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 4.5E-12 9.7E-17 114.4 13.6 135 43-183 4-142 (223)
54 PRK05785 hypothetical protein; 99.4 1.9E-12 4E-17 117.2 11.1 127 40-178 11-141 (226)
55 TIGR03533 L3_gln_methyl protei 99.4 4.7E-12 1E-16 118.5 13.9 107 78-185 121-252 (284)
56 PRK00377 cbiT cobalt-precorrin 99.4 5E-12 1.1E-16 112.2 13.4 106 72-183 34-144 (198)
57 PRK00517 prmA ribosomal protei 99.4 3.8E-12 8.3E-17 117.2 12.5 94 77-183 118-212 (250)
58 TIGR00080 pimt protein-L-isoas 99.4 4.6E-12 9.9E-17 114.0 12.5 106 68-183 67-176 (215)
59 PRK11873 arsM arsenite S-adeno 99.4 4.3E-12 9.3E-17 118.4 12.7 105 76-184 75-183 (272)
60 PRK01683 trans-aconitate 2-met 99.4 3E-12 6.5E-17 118.5 11.5 105 70-183 23-129 (258)
61 KOG1271 Methyltransferases [Ge 99.4 2.1E-12 4.5E-17 108.4 8.5 110 80-189 69-186 (227)
62 PRK11805 N5-glutamine S-adenos 99.4 8.4E-12 1.8E-16 117.9 13.4 105 80-185 135-264 (307)
63 PRK13942 protein-L-isoaspartat 99.4 7.8E-12 1.7E-16 112.1 12.5 106 68-183 66-175 (212)
64 PRK00121 trmB tRNA (guanine-N( 99.4 5.9E-12 1.3E-16 112.1 11.5 105 78-183 40-155 (202)
65 PLN02336 phosphoethanolamine N 99.3 9.3E-12 2E-16 125.4 13.3 104 76-184 264-369 (475)
66 PRK06922 hypothetical protein; 99.3 9.4E-12 2E-16 125.3 12.7 107 76-184 416-537 (677)
67 TIGR02021 BchM-ChlM magnesium 99.3 1.4E-11 3E-16 111.3 12.5 104 76-183 53-157 (219)
68 PRK09489 rsmC 16S ribosomal RN 99.3 1.2E-11 2.6E-16 118.3 12.7 103 78-183 196-302 (342)
69 TIGR00536 hemK_fam HemK family 99.3 1.8E-11 3.8E-16 114.9 13.5 107 80-187 116-247 (284)
70 PRK15128 23S rRNA m(5)C1962 me 99.3 1.4E-11 3.1E-16 119.9 12.9 111 78-189 220-344 (396)
71 PF08242 Methyltransf_12: Meth 99.3 3.8E-13 8.2E-18 105.6 1.5 94 83-180 1-99 (99)
72 COG2242 CobL Precorrin-6B meth 99.3 3.3E-11 7.1E-16 103.0 13.1 110 69-186 25-137 (187)
73 PF08003 Methyltransf_9: Prote 99.3 2E-11 4.4E-16 111.8 12.2 112 69-183 106-218 (315)
74 PRK08317 hypothetical protein; 99.3 3.5E-11 7.6E-16 109.6 13.6 116 65-185 6-125 (241)
75 TIGR01177 conserved hypothetic 99.3 2.2E-11 4.7E-16 116.7 12.7 116 66-183 170-293 (329)
76 KOG4300 Predicted methyltransf 99.3 1.3E-11 2.9E-16 105.7 9.6 100 80-183 78-181 (252)
77 PRK10909 rsmD 16S rRNA m(2)G96 99.3 3.5E-11 7.5E-16 106.2 12.6 104 77-185 52-160 (199)
78 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.2E-11 4.9E-16 108.9 11.4 114 63-182 20-150 (213)
79 PRK05134 bifunctional 3-demeth 99.3 4.4E-11 9.6E-16 109.0 13.2 110 68-183 38-150 (233)
80 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.2E-11 2.6E-16 129.5 10.6 108 78-185 538-657 (702)
81 PRK11705 cyclopropane fatty ac 99.3 3E-11 6.5E-16 117.6 12.5 107 70-184 159-267 (383)
82 TIGR02716 C20_methyl_CrtF C-20 99.3 4.4E-11 9.5E-16 113.5 13.4 116 68-185 139-255 (306)
83 PF13489 Methyltransf_23: Meth 99.3 1.1E-11 2.3E-16 105.9 8.4 105 66-185 9-116 (161)
84 COG2813 RsmC 16S RNA G1207 met 99.3 3.8E-11 8.3E-16 110.1 12.4 114 68-183 148-265 (300)
85 PRK14968 putative methyltransf 99.3 4.8E-11 1E-15 104.8 12.5 106 77-183 22-147 (188)
86 PRK07402 precorrin-6B methylas 99.3 7.7E-11 1.7E-15 104.5 13.8 109 69-185 31-143 (196)
87 TIGR01983 UbiG ubiquinone bios 99.3 7.4E-11 1.6E-15 106.7 14.0 120 59-183 26-148 (224)
88 PRK00312 pcm protein-L-isoaspa 99.3 6.5E-11 1.4E-15 106.3 13.3 105 68-183 68-174 (212)
89 PRK04266 fibrillarin; Provisio 99.3 5.6E-11 1.2E-15 107.2 12.8 103 73-183 67-175 (226)
90 PLN03075 nicotianamine synthas 99.3 7.3E-11 1.6E-15 109.3 13.7 106 78-185 123-234 (296)
91 PRK14966 unknown domain/N5-glu 99.3 5.4E-11 1.2E-15 114.8 13.0 124 57-185 232-382 (423)
92 COG2263 Predicted RNA methylas 99.3 9.1E-11 2E-15 99.8 12.8 93 73-169 40-133 (198)
93 COG2890 HemK Methylase of poly 99.3 5.4E-11 1.2E-15 110.8 12.5 120 62-185 95-239 (280)
94 PLN02585 magnesium protoporphy 99.3 1.2E-11 2.6E-16 116.7 8.2 100 77-181 143-247 (315)
95 PRK01544 bifunctional N5-gluta 99.3 4.6E-11 1E-15 120.3 12.7 106 79-185 139-270 (506)
96 PLN02781 Probable caffeoyl-CoA 99.3 4.8E-11 1E-15 108.5 11.4 106 77-188 67-182 (234)
97 TIGR00091 tRNA (guanine-N(7)-) 99.3 3.7E-11 8E-16 106.3 10.4 105 78-183 16-131 (194)
98 COG4106 Tam Trans-aconitate me 99.2 2E-11 4.3E-16 105.5 8.0 109 72-189 24-134 (257)
99 PLN02336 phosphoethanolamine N 99.2 3.6E-11 7.9E-16 121.1 11.4 112 69-185 28-143 (475)
100 smart00138 MeTrc Methyltransfe 99.2 2.4E-11 5.3E-16 112.5 8.7 107 78-185 99-243 (264)
101 TIGR00095 RNA methyltransferas 99.2 1.1E-10 2.4E-15 102.5 12.0 105 77-185 48-160 (189)
102 COG2519 GCD14 tRNA(1-methylade 99.2 1.1E-10 2.5E-15 104.1 12.0 107 69-183 85-194 (256)
103 PRK04457 spermidine synthase; 99.2 1E-10 2.2E-15 108.2 11.7 106 78-183 66-176 (262)
104 TIGR02072 BioC biotin biosynth 99.2 1E-10 2.2E-15 106.6 11.6 99 77-183 33-134 (240)
105 PRK09328 N5-glutamine S-adenos 99.2 1.7E-10 3.7E-15 107.8 13.2 121 61-183 91-237 (275)
106 TIGR03534 RF_mod_PrmC protein- 99.2 2E-10 4.4E-15 105.7 13.5 118 64-183 74-216 (251)
107 PHA03412 putative methyltransf 99.2 9.1E-11 2E-15 104.7 10.1 103 78-186 49-165 (241)
108 PRK14904 16S rRNA methyltransf 99.2 2.2E-10 4.7E-15 114.2 13.7 114 74-188 246-381 (445)
109 COG1092 Predicted SAM-dependen 99.2 1E-10 2.3E-15 112.5 10.9 113 77-189 216-341 (393)
110 COG2518 Pcm Protein-L-isoaspar 99.2 1.4E-10 3E-15 101.3 10.6 104 69-183 63-168 (209)
111 PRK13255 thiopurine S-methyltr 99.2 1.4E-10 3E-15 104.2 11.0 100 77-181 36-152 (218)
112 PF10672 Methyltrans_SAM: S-ad 99.2 1.7E-10 3.6E-15 106.9 11.7 109 78-186 123-240 (286)
113 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.1E-10 4.5E-15 106.4 12.0 113 75-188 68-203 (264)
114 TIGR03704 PrmC_rel_meth putati 99.2 3.3E-10 7.1E-15 104.2 12.9 120 62-185 69-217 (251)
115 PRK10901 16S rRNA methyltransf 99.2 2.7E-10 5.8E-15 112.9 12.9 113 74-188 240-376 (427)
116 PRK14902 16S rRNA methyltransf 99.2 2.5E-10 5.5E-15 113.7 12.8 114 74-188 246-383 (444)
117 PRK14903 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 112.6 12.9 114 74-188 233-370 (431)
118 PRK07580 Mg-protoporphyrin IX 99.2 4.1E-10 8.9E-15 102.3 12.5 101 77-181 62-163 (230)
119 PRK14901 16S rRNA methyltransf 99.2 3.3E-10 7.2E-15 112.5 12.8 114 74-188 248-388 (434)
120 PRK00811 spermidine synthase; 99.2 3.2E-10 7E-15 106.1 12.0 109 78-186 76-193 (283)
121 PRK06202 hypothetical protein; 99.2 3.3E-10 7.2E-15 103.2 11.8 109 67-181 49-164 (232)
122 PRK13943 protein-L-isoaspartat 99.1 5.5E-10 1.2E-14 105.7 13.5 104 69-182 71-178 (322)
123 PRK14121 tRNA (guanine-N(7)-)- 99.1 4.4E-10 9.6E-15 107.9 12.9 107 76-183 120-234 (390)
124 TIGR03587 Pse_Me-ase pseudamin 99.1 3.1E-10 6.8E-15 101.0 11.0 90 78-175 43-135 (204)
125 PRK11188 rrmJ 23S rRNA methylt 99.1 4.2E-10 9E-15 100.6 11.8 96 77-183 50-164 (209)
126 PRK03522 rumB 23S rRNA methylu 99.1 5.5E-10 1.2E-14 106.3 12.8 111 67-185 162-275 (315)
127 smart00650 rADc Ribosomal RNA 99.1 5.4E-10 1.2E-14 96.6 11.5 106 70-183 5-112 (169)
128 TIGR03438 probable methyltrans 99.1 5.7E-10 1.2E-14 105.5 12.4 116 67-185 54-178 (301)
129 TIGR00563 rsmB ribosomal RNA s 99.1 6E-10 1.3E-14 110.4 12.9 116 74-189 234-373 (426)
130 COG4976 Predicted methyltransf 99.1 2E-11 4.4E-16 106.2 2.0 134 38-185 85-226 (287)
131 PF01135 PCMT: Protein-L-isoas 99.1 3.4E-10 7.4E-15 100.7 9.8 106 67-182 61-170 (209)
132 PRK11088 rrmA 23S rRNA methylt 99.1 6E-10 1.3E-14 103.9 11.6 89 78-182 85-179 (272)
133 PF03602 Cons_hypoth95: Conser 99.1 3.7E-10 8.1E-15 98.5 9.1 106 77-185 41-154 (183)
134 PLN02476 O-methyltransferase 99.1 6.2E-10 1.3E-14 102.6 10.8 106 77-188 117-232 (278)
135 COG0742 N6-adenine-specific me 99.1 1.6E-09 3.5E-14 93.2 12.6 111 77-187 42-157 (187)
136 KOG2904 Predicted methyltransf 99.1 9.5E-10 2.1E-14 98.4 11.3 123 62-185 129-286 (328)
137 PF01596 Methyltransf_3: O-met 99.1 4.5E-10 9.7E-15 99.6 9.3 107 77-189 44-160 (205)
138 PTZ00146 fibrillarin; Provisio 99.1 1E-09 2.3E-14 101.3 11.9 113 63-183 114-236 (293)
139 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.5E-09 3.2E-14 108.2 14.0 113 63-184 282-400 (443)
140 cd02440 AdoMet_MTases S-adenos 99.1 1E-09 2.2E-14 85.4 9.9 100 81-183 1-103 (107)
141 COG4122 Predicted O-methyltran 99.1 9.8E-10 2.1E-14 97.4 10.0 107 77-189 58-171 (219)
142 PHA03411 putative methyltransf 99.0 1E-09 2.2E-14 100.3 9.6 100 78-183 64-182 (279)
143 TIGR02085 meth_trns_rumB 23S r 99.0 2.4E-09 5.3E-14 104.2 12.5 100 77-184 232-334 (374)
144 PLN02366 spermidine synthase 99.0 4.5E-09 9.7E-14 99.0 13.1 112 78-189 91-211 (308)
145 PLN02672 methionine S-methyltr 99.0 2E-09 4.3E-14 115.2 11.8 133 60-193 99-287 (1082)
146 PF10294 Methyltransf_16: Puta 99.0 1.7E-09 3.6E-14 93.8 9.2 103 76-181 43-153 (173)
147 KOG1541 Predicted protein carb 99.0 2E-09 4.4E-14 93.3 9.2 99 78-183 50-159 (270)
148 PF08704 GCD14: tRNA methyltra 99.0 3.4E-09 7.3E-14 96.3 11.1 107 68-182 30-144 (247)
149 TIGR00479 rumA 23S rRNA (uraci 99.0 5.9E-09 1.3E-13 103.7 13.3 113 63-183 277-395 (431)
150 TIGR00417 speE spermidine synt 99.0 6.2E-09 1.3E-13 96.9 12.5 108 78-185 72-187 (270)
151 PLN02589 caffeoyl-CoA O-methyl 99.0 3.2E-09 7E-14 96.6 9.5 107 77-189 78-195 (247)
152 TIGR00438 rrmJ cell division p 99.0 3.7E-09 8.1E-14 93.0 9.6 97 76-183 30-145 (188)
153 PF03291 Pox_MCEL: mRNA cappin 99.0 6.8E-09 1.5E-13 98.7 11.9 106 78-183 62-185 (331)
154 PF02475 Met_10: Met-10+ like- 98.9 5.9E-09 1.3E-13 91.8 10.4 106 66-180 91-198 (200)
155 PRK01581 speE spermidine synth 98.9 6.3E-09 1.4E-13 98.7 11.2 108 77-184 149-268 (374)
156 PRK03612 spermidine synthase; 98.9 5.6E-09 1.2E-13 105.8 10.9 110 77-186 296-417 (521)
157 KOG2899 Predicted methyltransf 98.9 6.5E-09 1.4E-13 91.5 9.6 106 76-183 56-208 (288)
158 PTZ00338 dimethyladenosine tra 98.9 1.2E-08 2.7E-13 95.5 11.1 83 69-153 27-110 (294)
159 KOG3010 Methyltransferase [Gen 98.9 1.9E-09 4.2E-14 95.0 5.1 97 80-182 35-135 (261)
160 TIGR02081 metW methionine bios 98.9 1.4E-08 3.1E-13 89.8 10.5 89 78-177 13-105 (194)
161 KOG1501 Arginine N-methyltrans 98.8 8.1E-09 1.7E-13 97.8 8.1 220 103-360 391-624 (636)
162 PRK14896 ksgA 16S ribosomal RN 98.8 2E-08 4.3E-13 92.9 10.6 82 67-153 18-100 (258)
163 PRK04338 N(2),N(2)-dimethylgua 98.8 1.7E-08 3.7E-13 98.0 10.2 97 79-183 58-157 (382)
164 PF01170 UPF0020: Putative RNA 98.8 3.9E-08 8.5E-13 85.7 11.2 120 64-183 14-150 (179)
165 COG1041 Predicted DNA modifica 98.8 2.7E-08 5.8E-13 93.3 10.7 118 65-185 184-311 (347)
166 PRK13256 thiopurine S-methyltr 98.8 2.8E-08 6.1E-13 89.1 10.4 118 63-183 29-162 (226)
167 PF05724 TPMT: Thiopurine S-me 98.8 9.5E-09 2.1E-13 92.2 7.3 115 64-181 24-152 (218)
168 PF07021 MetW: Methionine bios 98.8 1.6E-08 3.5E-13 87.1 8.1 88 77-175 12-103 (193)
169 PRK00274 ksgA 16S ribosomal RN 98.8 2.7E-08 5.9E-13 92.7 9.5 81 68-153 32-114 (272)
170 KOG1975 mRNA cap methyltransfe 98.8 2.1E-08 4.6E-13 91.8 8.4 107 77-183 116-236 (389)
171 PF02527 GidB: rRNA small subu 98.8 1.6E-07 3.4E-12 81.8 12.7 98 81-186 51-150 (184)
172 TIGR00478 tly hemolysin TlyA f 98.7 3.7E-08 8E-13 88.7 8.6 48 68-115 65-113 (228)
173 TIGR02143 trmA_only tRNA (urac 98.7 9.7E-08 2.1E-12 92.2 11.8 94 80-183 199-310 (353)
174 PRK11727 23S rRNA mA1618 methy 98.7 7.9E-08 1.7E-12 90.8 10.5 76 78-153 114-198 (321)
175 PLN02823 spermine synthase 98.7 1.3E-07 2.8E-12 90.2 11.6 106 78-183 103-219 (336)
176 PRK05031 tRNA (uracil-5-)-meth 98.7 1.5E-07 3.3E-12 91.1 12.2 110 63-183 192-319 (362)
177 COG0421 SpeE Spermidine syntha 98.7 1.5E-07 3.2E-12 87.3 11.4 111 80-190 78-196 (282)
178 PF00891 Methyltransf_2: O-met 98.7 1.9E-07 4.2E-12 85.4 12.1 106 70-185 92-200 (241)
179 PF02390 Methyltransf_4: Putat 98.7 1.4E-07 3.1E-12 83.2 10.7 103 80-183 19-132 (195)
180 KOG3420 Predicted RNA methylas 98.7 4.1E-08 8.8E-13 79.7 6.5 82 69-152 39-122 (185)
181 COG2521 Predicted archaeal met 98.7 1.7E-08 3.7E-13 88.4 4.6 120 63-182 117-243 (287)
182 PF05891 Methyltransf_PK: AdoM 98.7 3.8E-08 8.3E-13 86.5 6.8 105 79-185 56-162 (218)
183 PRK04148 hypothetical protein; 98.7 2.6E-07 5.7E-12 75.5 10.9 76 66-150 4-83 (134)
184 COG2265 TrmA SAM-dependent met 98.7 1.7E-07 3.7E-12 92.1 11.7 118 60-185 275-397 (432)
185 COG2520 Predicted methyltransf 98.7 1.5E-07 3.3E-12 88.9 10.3 99 77-182 187-287 (341)
186 KOG2361 Predicted methyltransf 98.7 6.2E-08 1.4E-12 85.5 7.1 106 81-189 74-188 (264)
187 KOG0820 Ribosomal RNA adenine 98.6 1.7E-07 3.8E-12 84.1 9.9 86 65-152 45-131 (315)
188 KOG3191 Predicted N6-DNA-methy 98.6 4.8E-07 1E-11 76.5 11.5 102 78-182 43-166 (209)
189 COG3897 Predicted methyltransf 98.6 1.5E-07 3.2E-12 80.6 7.8 104 68-179 69-173 (218)
190 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.8E-07 6.1E-12 89.1 10.8 97 79-183 45-146 (374)
191 TIGR00755 ksgA dimethyladenosi 98.6 2.5E-07 5.5E-12 85.3 9.8 81 68-153 19-103 (253)
192 COG0357 GidB Predicted S-adeno 98.6 4.1E-07 8.9E-12 80.6 10.1 134 41-182 25-166 (215)
193 PF09445 Methyltransf_15: RNA 98.6 1.5E-07 3.2E-12 79.8 6.7 72 80-152 1-77 (163)
194 COG0116 Predicted N6-adenine-s 98.6 9.6E-07 2.1E-11 84.1 12.6 123 63-185 176-345 (381)
195 COG0030 KsgA Dimethyladenosine 98.5 5.3E-07 1.1E-11 82.0 10.4 83 67-153 19-104 (259)
196 PRK11933 yebU rRNA (cytosine-C 98.5 7.8E-07 1.7E-11 88.5 12.3 113 75-188 110-246 (470)
197 PF01739 CheR: CheR methyltran 98.5 2.5E-07 5.5E-12 81.4 7.9 128 57-185 6-176 (196)
198 PF01564 Spermine_synth: Sperm 98.5 4.7E-07 1E-11 82.9 9.8 107 78-184 76-191 (246)
199 KOG1663 O-methyltransferase [S 98.5 6.8E-07 1.5E-11 78.7 10.1 107 77-189 72-188 (237)
200 PLN02232 ubiquinone biosynthes 98.5 2.4E-07 5.3E-12 79.2 7.1 77 105-184 1-81 (160)
201 PF12147 Methyltransf_20: Puta 98.5 2.3E-06 5E-11 78.1 12.7 112 77-188 134-253 (311)
202 PF06080 DUF938: Protein of un 98.5 7.1E-07 1.5E-11 78.1 9.0 103 81-184 28-141 (204)
203 COG1189 Predicted rRNA methyla 98.5 7.7E-07 1.7E-11 78.9 8.7 106 65-182 66-176 (245)
204 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.1E-06 2.3E-11 85.0 10.2 92 63-157 182-291 (352)
205 KOG2940 Predicted methyltransf 98.4 3.6E-07 7.7E-12 80.0 5.7 99 79-183 73-173 (325)
206 PRK10611 chemotaxis methyltran 98.4 7.4E-07 1.6E-11 83.0 8.1 106 79-185 116-263 (287)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.4 2.1E-06 4.5E-11 90.3 12.2 118 63-180 174-343 (702)
208 COG0220 Predicted S-adenosylme 98.4 2.4E-06 5.2E-11 76.8 10.5 103 80-183 50-163 (227)
209 PF05219 DREV: DREV methyltran 98.4 8.4E-07 1.8E-11 79.9 7.4 97 78-188 94-192 (265)
210 COG3963 Phospholipid N-methylt 98.4 2.5E-06 5.4E-11 71.3 9.4 112 65-183 35-155 (194)
211 COG1352 CheR Methylase of chem 98.4 2.8E-06 6E-11 78.1 10.1 129 56-185 71-242 (268)
212 PF04816 DUF633: Family of unk 98.3 5.6E-06 1.2E-10 73.4 10.3 95 82-181 1-98 (205)
213 KOG1661 Protein-L-isoaspartate 98.3 3.1E-06 6.6E-11 73.4 7.8 97 76-181 80-190 (237)
214 PF05148 Methyltransf_8: Hypot 98.3 3.8E-06 8.3E-11 73.3 8.3 86 78-186 72-160 (219)
215 PF07942 N2227: N2227-like pro 98.3 1.3E-05 2.7E-10 73.7 11.9 102 78-183 56-201 (270)
216 PF08123 DOT1: Histone methyla 98.3 7.4E-06 1.6E-10 72.7 10.1 108 70-181 34-155 (205)
217 PRK00536 speE spermidine synth 98.2 1.3E-05 2.8E-10 73.6 10.7 102 78-190 72-177 (262)
218 KOG2915 tRNA(1-methyladenosine 98.2 2E-05 4.4E-10 71.0 11.1 104 68-179 95-204 (314)
219 PRK00050 16S rRNA m(4)C1402 me 98.1 6.5E-06 1.4E-10 76.9 7.8 81 69-152 10-98 (296)
220 PF03141 Methyltransf_29: Puta 98.1 1.9E-06 4.2E-11 84.1 4.4 117 63-188 98-223 (506)
221 KOG2187 tRNA uracil-5-methyltr 98.1 4.6E-06 9.9E-11 81.5 5.8 115 60-181 365-487 (534)
222 PF01728 FtsJ: FtsJ-like methy 98.1 6E-06 1.3E-10 72.1 5.8 94 78-182 23-137 (181)
223 PF00398 RrnaAD: Ribosomal RNA 98.1 1.3E-05 2.7E-10 74.4 8.0 84 65-152 17-105 (262)
224 PRK11760 putative 23S rRNA C24 98.1 1.9E-05 4E-10 74.4 9.0 86 77-177 210-296 (357)
225 KOG3045 Predicted RNA methylas 98.0 2.1E-05 4.6E-10 70.3 8.6 86 78-186 180-266 (325)
226 PF13679 Methyltransf_32: Meth 98.0 2.5E-05 5.4E-10 65.3 8.3 74 77-150 24-105 (141)
227 PRK01544 bifunctional N5-gluta 98.0 3.7E-05 8E-10 77.8 10.4 105 78-183 347-461 (506)
228 COG0144 Sun tRNA and rRNA cyto 98.0 0.0001 2.2E-09 71.2 12.9 116 73-189 151-293 (355)
229 KOG3178 Hydroxyindole-O-methyl 98.0 3.9E-05 8.5E-10 72.0 9.2 97 80-185 179-276 (342)
230 COG4262 Predicted spermidine s 97.9 4.8E-05 1E-09 71.2 8.9 113 80-192 291-415 (508)
231 TIGR01444 fkbM_fam methyltrans 97.9 3.7E-05 8.1E-10 64.1 7.3 57 81-138 1-59 (143)
232 PF13578 Methyltransf_24: Meth 97.9 7.2E-06 1.6E-10 64.9 2.6 98 83-184 1-105 (106)
233 PHA01634 hypothetical protein 97.9 8.2E-05 1.8E-09 59.3 8.1 72 76-151 26-99 (156)
234 PF05971 Methyltransf_10: Prot 97.9 0.00018 3.9E-09 67.0 11.8 76 79-155 103-188 (299)
235 KOG2730 Methylase [General fun 97.8 1.8E-05 3.8E-10 69.2 4.4 98 78-179 94-197 (263)
236 PF02384 N6_Mtase: N-6 DNA Met 97.8 8.8E-05 1.9E-09 70.6 9.7 114 68-181 36-180 (311)
237 PRK10742 putative methyltransf 97.8 0.00014 3.1E-09 65.6 10.2 86 70-156 78-176 (250)
238 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 9.7E-05 2.1E-09 69.2 9.6 113 75-188 82-223 (283)
239 PF09243 Rsm22: Mitochondrial 97.8 0.00022 4.9E-09 66.4 11.6 107 68-176 23-133 (274)
240 COG0293 FtsJ 23S rRNA methylas 97.8 6.3E-05 1.4E-09 65.9 7.1 94 78-182 45-157 (205)
241 PF03059 NAS: Nicotianamine sy 97.7 0.00033 7.1E-09 64.7 11.4 103 79-183 121-229 (276)
242 COG0500 SmtA SAM-dependent met 97.7 0.00051 1.1E-08 57.0 10.7 99 82-186 52-157 (257)
243 PF01269 Fibrillarin: Fibrilla 97.7 0.00074 1.6E-08 59.8 11.5 114 62-183 54-177 (229)
244 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 6.8E-05 1.5E-09 68.5 4.6 108 76-183 54-198 (256)
245 KOG4058 Uncharacterized conser 97.5 0.00038 8.2E-09 57.0 7.1 106 71-183 65-171 (199)
246 TIGR02987 met_A_Alw26 type II 97.5 0.00032 7E-09 71.7 8.3 75 78-153 31-121 (524)
247 TIGR03439 methyl_EasF probable 97.4 0.002 4.4E-08 61.1 12.4 112 68-183 68-196 (319)
248 KOG1269 SAM-dependent methyltr 97.4 0.00034 7.4E-09 67.3 6.4 106 77-185 109-216 (364)
249 COG2384 Predicted SAM-dependen 97.4 0.0033 7.1E-08 55.5 11.9 92 79-175 17-111 (226)
250 PF06962 rRNA_methylase: Putat 97.3 0.001 2.2E-08 54.9 7.8 81 103-184 1-92 (140)
251 KOG3201 Uncharacterized conser 97.3 0.00011 2.5E-09 61.1 2.0 112 67-181 18-137 (201)
252 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0008 1.7E-08 65.4 8.2 98 79-183 50-153 (377)
253 KOG1709 Guanidinoacetate methy 97.3 0.0024 5.2E-08 55.9 10.1 102 77-185 100-207 (271)
254 PF01861 DUF43: Protein of unk 97.1 0.011 2.4E-07 53.1 12.8 98 74-178 40-142 (243)
255 KOG1122 tRNA and rRNA cytosine 97.1 0.0039 8.5E-08 59.9 10.5 115 74-189 237-376 (460)
256 PF04989 CmcI: Cephalosporin h 97.1 0.0034 7.5E-08 55.2 9.3 120 56-185 14-148 (206)
257 KOG2352 Predicted spermine/spe 97.1 0.0038 8.3E-08 61.3 10.0 98 81-181 51-158 (482)
258 COG1889 NOP1 Fibrillarin-like 97.1 0.0052 1.1E-07 53.4 9.6 115 61-183 56-179 (231)
259 KOG1331 Predicted methyltransf 97.0 0.00041 9E-09 63.3 2.3 95 78-182 45-141 (293)
260 KOG1227 Putative methyltransfe 97.0 0.00038 8.3E-09 63.7 2.0 97 78-181 194-293 (351)
261 KOG2798 Putative trehalase [Ca 97.0 0.011 2.3E-07 54.8 11.3 103 79-185 151-297 (369)
262 KOG4589 Cell division protein 96.9 0.0051 1.1E-07 52.7 8.0 94 77-181 68-181 (232)
263 KOG3987 Uncharacterized conser 96.8 0.00028 6.1E-09 61.2 0.1 92 78-183 112-206 (288)
264 PF04672 Methyltransf_19: S-ad 96.8 0.0075 1.6E-07 55.3 9.2 106 80-187 70-193 (267)
265 COG5459 Predicted rRNA methyla 96.8 0.0034 7.3E-08 58.9 6.9 114 68-183 103-224 (484)
266 PF11968 DUF3321: Putative met 96.7 0.0046 9.9E-08 54.6 6.4 83 80-179 53-139 (219)
267 PF07091 FmrO: Ribosomal RNA m 96.7 0.01 2.2E-07 53.7 8.5 83 64-150 93-177 (251)
268 TIGR00006 S-adenosyl-methyltra 96.6 0.016 3.4E-07 54.5 9.9 82 69-152 11-100 (305)
269 KOG2671 Putative RNA methylase 96.6 0.0025 5.3E-08 59.6 4.4 77 76-153 206-293 (421)
270 KOG1099 SAM-dependent methyltr 96.3 0.01 2.2E-07 52.6 6.3 96 75-181 37-160 (294)
271 KOG2793 Putative N2,N2-dimethy 96.2 0.031 6.8E-07 50.8 8.9 99 78-179 86-194 (248)
272 KOG2920 Predicted methyltransf 96.1 0.003 6.4E-08 57.9 2.1 110 76-188 114-238 (282)
273 cd00315 Cyt_C5_DNA_methylase C 95.9 0.016 3.4E-07 54.1 6.0 65 81-152 2-70 (275)
274 COG4798 Predicted methyltransf 95.9 0.026 5.6E-07 48.8 6.6 111 74-185 44-167 (238)
275 PF04445 SAM_MT: Putative SAM- 95.9 0.032 7E-07 50.2 7.4 75 80-155 77-162 (234)
276 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.027 5.8E-07 53.6 7.1 97 79-183 53-153 (380)
277 PF03141 Methyltransf_29: Puta 95.8 0.014 3E-07 57.7 5.3 104 79-189 366-472 (506)
278 COG1063 Tdh Threonine dehydrog 95.8 0.017 3.7E-07 55.9 5.9 93 78-183 168-268 (350)
279 KOG1253 tRNA methyltransferase 95.8 0.0044 9.5E-08 60.8 1.7 100 78-184 109-216 (525)
280 COG1064 AdhP Zn-dependent alco 95.6 0.061 1.3E-06 51.2 8.6 92 76-185 164-260 (339)
281 PRK09424 pntA NAD(P) transhydr 95.6 0.064 1.4E-06 54.2 9.2 95 77-183 163-284 (509)
282 KOG1562 Spermidine synthase [A 95.6 0.025 5.4E-07 52.1 5.5 112 78-189 121-241 (337)
283 KOG3115 Methyltransferase-like 95.4 0.042 9.2E-07 47.8 6.1 102 79-181 61-180 (249)
284 PRK09880 L-idonate 5-dehydroge 94.6 0.14 3E-06 49.2 8.1 95 76-183 167-265 (343)
285 cd08283 FDH_like_1 Glutathione 94.6 0.074 1.6E-06 52.1 6.2 105 75-183 181-305 (386)
286 PF11599 AviRa: RRNA methyltra 94.5 0.76 1.6E-05 40.7 11.5 105 78-182 51-212 (246)
287 COG3129 Predicted SAM-dependen 94.5 0.068 1.5E-06 47.5 4.9 76 78-154 78-163 (292)
288 KOG0024 Sorbitol dehydrogenase 94.2 0.11 2.3E-06 48.8 5.8 93 77-183 168-272 (354)
289 COG0275 Predicted S-adenosylme 94.1 0.42 9.1E-06 44.5 9.5 83 68-152 13-104 (314)
290 COG0286 HsdM Type I restrictio 94.0 0.41 8.9E-06 48.5 10.3 86 69-154 177-274 (489)
291 PF00145 DNA_methylase: C-5 cy 93.8 0.1 2.2E-06 49.7 5.4 64 81-152 2-69 (335)
292 KOG2078 tRNA modification enzy 93.5 0.029 6.3E-07 54.1 1.0 87 43-139 223-311 (495)
293 COG1568 Predicted methyltransf 93.5 0.4 8.6E-06 44.0 8.0 76 76-154 150-231 (354)
294 PRK11524 putative methyltransf 93.5 0.29 6.3E-06 45.8 7.6 46 76-122 206-252 (284)
295 KOG1596 Fibrillarin and relate 93.4 0.27 5.8E-06 44.1 6.6 99 73-183 151-260 (317)
296 PF01795 Methyltransf_5: MraW 93.3 0.18 3.9E-06 47.5 5.9 81 70-152 12-101 (310)
297 PF07757 AdoMet_MTase: Predict 93.3 0.15 3.3E-06 39.8 4.4 32 78-110 58-89 (112)
298 PF05711 TylF: Macrocin-O-meth 93.2 0.86 1.9E-05 41.7 9.9 124 59-187 55-215 (248)
299 PRK13699 putative methylase; P 92.9 0.49 1.1E-05 42.7 7.9 46 77-123 162-208 (227)
300 TIGR00027 mthyl_TIGR00027 meth 92.8 0.9 2E-05 42.0 9.8 124 60-185 64-198 (260)
301 PF03269 DUF268: Caenorhabditi 92.8 0.067 1.5E-06 44.9 2.0 96 79-183 2-110 (177)
302 PF01555 N6_N4_Mtase: DNA meth 92.6 0.33 7.1E-06 43.3 6.4 42 76-118 189-231 (231)
303 TIGR00561 pntA NAD(P) transhyd 92.5 0.34 7.4E-06 49.0 6.9 92 78-181 163-281 (511)
304 TIGR00675 dcm DNA-methyltransf 92.3 0.16 3.4E-06 48.4 4.1 64 82-152 1-67 (315)
305 TIGR03366 HpnZ_proposed putati 92.2 0.39 8.5E-06 44.7 6.7 95 76-183 118-217 (280)
306 cd08281 liver_ADH_like1 Zinc-d 92.2 0.32 6.9E-06 47.3 6.3 95 75-183 188-289 (371)
307 TIGR03451 mycoS_dep_FDH mycoth 91.8 0.35 7.6E-06 46.7 6.0 96 75-183 173-275 (358)
308 PRK01747 mnmC bifunctional tRN 91.8 0.64 1.4E-05 49.1 8.3 104 78-181 57-203 (662)
309 TIGR01202 bchC 2-desacetyl-2-h 91.7 0.58 1.3E-05 44.2 7.2 84 78-183 144-230 (308)
310 KOG2198 tRNA cytosine-5-methyl 91.5 1.6 3.5E-05 41.8 9.7 112 75-187 152-299 (375)
311 COG0686 Ald Alanine dehydrogen 91.5 0.7 1.5E-05 43.2 7.1 96 78-182 167-266 (371)
312 cd08239 THR_DH_like L-threonin 91.3 0.53 1.1E-05 45.0 6.6 95 75-182 160-260 (339)
313 cd08230 glucose_DH Glucose deh 91.0 0.75 1.6E-05 44.4 7.3 92 77-183 171-268 (355)
314 cd08237 ribitol-5-phosphate_DH 90.9 1.1 2.3E-05 43.1 8.4 90 77-183 162-255 (341)
315 PF02636 Methyltransf_28: Puta 90.6 0.86 1.9E-05 41.8 7.1 68 79-150 19-101 (252)
316 PF07279 DUF1442: Protein of u 90.5 3.9 8.6E-05 36.3 10.5 99 78-184 41-148 (218)
317 PLN02740 Alcohol dehydrogenase 90.3 1.9 4.1E-05 42.1 9.5 44 75-118 195-241 (381)
318 PRK10309 galactitol-1-phosphat 90.1 0.68 1.5E-05 44.4 6.2 96 76-183 158-259 (347)
319 PF02737 3HCDH_N: 3-hydroxyacy 90.1 1.7 3.7E-05 37.7 8.0 101 81-190 1-120 (180)
320 PF06859 Bin3: Bicoid-interact 89.9 0.095 2.1E-06 41.2 0.0 41 144-184 1-44 (110)
321 COG0270 Dcm Site-specific DNA 89.9 0.57 1.2E-05 44.9 5.4 67 80-152 4-75 (328)
322 cd00401 AdoHcyase S-adenosyl-L 89.7 2.4 5.2E-05 41.9 9.6 87 77-184 200-289 (413)
323 PF06460 NSP13: Coronavirus NS 89.3 1.2 2.6E-05 40.6 6.4 111 59-181 41-166 (299)
324 KOG2651 rRNA adenine N-6-methy 89.3 1.3 2.8E-05 42.5 7.0 40 79-119 154-195 (476)
325 PRK12475 thiamine/molybdopteri 89.0 0.97 2.1E-05 43.5 6.2 74 77-150 22-122 (338)
326 cd05188 MDR Medium chain reduc 88.9 1.5 3.2E-05 39.8 7.3 92 77-182 133-230 (271)
327 cd08254 hydroxyacyl_CoA_DH 6-h 88.9 2.3 5E-05 40.2 8.9 94 76-183 163-262 (338)
328 KOG0821 Predicted ribosomal RN 88.9 1.4 3.1E-05 39.0 6.5 94 41-140 17-111 (326)
329 PRK05854 short chain dehydroge 88.9 3.3 7.1E-05 39.2 9.8 76 76-152 11-101 (313)
330 KOG2912 Predicted DNA methylas 88.6 1.3 2.8E-05 41.5 6.4 71 82-153 106-187 (419)
331 TIGR02356 adenyl_thiF thiazole 88.1 1.5 3.4E-05 38.7 6.5 34 77-110 19-54 (202)
332 PRK11524 putative methyltransf 88.0 0.58 1.3E-05 43.8 3.9 54 129-183 9-79 (284)
333 TIGR02354 thiF_fam2 thiamine b 87.9 4.6 9.9E-05 35.7 9.4 33 78-110 20-54 (200)
334 KOG1201 Hydroxysteroid 17-beta 87.8 3.2 7E-05 38.7 8.5 73 76-152 35-122 (300)
335 PRK10458 DNA cytosine methylas 87.8 2.9 6.3E-05 42.0 8.8 59 79-140 88-147 (467)
336 PRK07688 thiamine/molybdopteri 87.5 1.2 2.7E-05 42.8 5.9 74 77-150 22-122 (339)
337 PLN02827 Alcohol dehydrogenase 86.7 3.6 7.8E-05 40.1 8.8 95 75-182 190-293 (378)
338 PRK08644 thiamine biosynthesis 86.4 2.5 5.5E-05 37.7 6.9 73 78-150 27-123 (212)
339 COG2933 Predicted SAM-dependen 86.4 2.6 5.7E-05 38.5 6.8 86 77-177 210-296 (358)
340 cd00757 ThiF_MoeB_HesA_family 86.2 2.1 4.5E-05 38.6 6.4 73 78-150 20-117 (228)
341 cd08232 idonate-5-DH L-idonate 86.2 4.3 9.3E-05 38.6 8.9 90 77-182 164-260 (339)
342 cd08285 NADP_ADH NADP(H)-depen 86.1 1.3 2.9E-05 42.4 5.4 95 75-182 163-264 (351)
343 COG1062 AdhC Zn-dependent alco 86.1 2.1 4.5E-05 40.7 6.3 45 75-119 182-229 (366)
344 KOG0022 Alcohol dehydrogenase, 86.1 1.9 4E-05 40.6 5.9 44 76-119 190-236 (375)
345 KOG3924 Putative protein methy 85.8 2.4 5.2E-05 41.0 6.7 108 72-183 186-307 (419)
346 TIGR02822 adh_fam_2 zinc-bindi 85.7 5.1 0.00011 38.2 9.2 88 75-183 162-253 (329)
347 COG1565 Uncharacterized conser 85.7 3.4 7.4E-05 39.6 7.6 46 78-123 77-132 (370)
348 TIGR00518 alaDH alanine dehydr 85.6 1.7 3.7E-05 42.4 5.9 96 78-182 166-265 (370)
349 PF05206 TRM13: Methyltransfer 85.4 3.5 7.7E-05 38.0 7.4 65 77-141 17-87 (259)
350 PF04072 LCM: Leucine carboxyl 85.1 1.5 3.3E-05 38.1 4.7 108 61-169 60-181 (183)
351 PRK13699 putative methylase; P 85.1 0.83 1.8E-05 41.3 3.1 53 129-182 2-70 (227)
352 cd08278 benzyl_alcohol_DH Benz 85.0 1.7 3.7E-05 42.1 5.6 90 76-182 184-283 (365)
353 COG3510 CmcI Cephalosporin hyd 84.5 5 0.00011 35.0 7.3 117 57-188 52-184 (237)
354 cd01492 Aos1_SUMO Ubiquitin ac 84.3 3.7 8E-05 36.2 6.8 74 78-151 20-117 (197)
355 PF03492 Methyltransf_7: SAM d 84.0 4.8 0.0001 38.6 8.0 106 78-183 16-182 (334)
356 PRK06035 3-hydroxyacyl-CoA deh 84.0 6.7 0.00015 36.7 8.9 93 80-181 4-118 (291)
357 PRK15001 SAM-dependent 23S rib 83.7 7.5 0.00016 38.0 9.3 92 81-181 47-139 (378)
358 PRK09260 3-hydroxybutyryl-CoA 83.7 5.2 0.00011 37.4 8.0 99 80-186 2-119 (288)
359 COG1255 Uncharacterized protei 83.6 6.7 0.00015 31.1 7.1 59 80-150 15-76 (129)
360 cd08231 MDR_TM0436_like Hypoth 83.5 8.2 0.00018 37.1 9.6 94 77-183 176-279 (361)
361 cd01065 NAD_bind_Shikimate_DH 83.3 11 0.00024 31.2 9.2 82 65-152 5-89 (155)
362 TIGR03201 dearomat_had 6-hydro 83.2 7.9 0.00017 37.1 9.3 43 75-118 163-208 (349)
363 TIGR02819 fdhA_non_GSH formald 82.6 2.7 5.8E-05 41.3 5.9 99 76-182 183-297 (393)
364 PRK08293 3-hydroxybutyryl-CoA 82.6 7.7 0.00017 36.3 8.7 96 80-183 4-119 (287)
365 PF00107 ADH_zinc_N: Zinc-bind 82.1 0.33 7.2E-06 39.2 -0.7 82 88-186 1-91 (130)
366 PRK07066 3-hydroxybutyryl-CoA 82.0 8.1 0.00018 36.9 8.6 94 80-181 8-116 (321)
367 cd01487 E1_ThiF_like E1_ThiF_l 82.0 5.4 0.00012 34.3 6.9 30 81-110 1-32 (174)
368 PRK07819 3-hydroxybutyryl-CoA 82.0 6.4 0.00014 36.8 7.9 98 80-186 6-123 (286)
369 cd08233 butanediol_DH_like (2R 81.8 3.4 7.3E-05 39.6 6.2 96 75-183 169-271 (351)
370 PRK07530 3-hydroxybutyryl-CoA 81.8 11 0.00024 35.2 9.5 98 80-186 5-121 (292)
371 PRK07063 short chain dehydroge 81.8 8.3 0.00018 35.0 8.5 74 77-151 5-93 (260)
372 PRK06197 short chain dehydroge 81.6 12 0.00026 35.1 9.7 76 76-152 13-103 (306)
373 PRK05808 3-hydroxybutyryl-CoA 81.5 14 0.00031 34.3 10.1 98 80-186 4-120 (282)
374 PF03686 UPF0146: Uncharacteri 81.5 6.1 0.00013 32.0 6.4 70 66-150 4-76 (127)
375 COG4301 Uncharacterized conser 81.3 30 0.00066 31.6 11.2 103 77-183 77-192 (321)
376 PLN02586 probable cinnamyl alc 80.9 7.1 0.00015 37.8 8.1 91 77-183 182-277 (360)
377 PRK06139 short chain dehydroge 80.7 11 0.00024 36.0 9.2 73 77-152 5-92 (330)
378 cd05278 FDH_like Formaldehyde 80.4 3.6 7.8E-05 39.2 5.8 94 76-182 165-265 (347)
379 TIGR02818 adh_III_F_hyde S-(hy 80.2 5.3 0.00012 38.7 7.0 95 74-182 181-285 (368)
380 cd01483 E1_enzyme_family Super 80.0 8.2 0.00018 31.8 7.1 70 81-150 1-95 (143)
381 PF03721 UDPG_MGDP_dh_N: UDP-g 80.0 7.3 0.00016 33.9 7.0 99 81-183 2-119 (185)
382 PRK05690 molybdopterin biosynt 79.8 6.4 0.00014 36.0 6.9 74 77-150 30-128 (245)
383 PF01488 Shikimate_DH: Shikima 79.6 6.7 0.00014 32.1 6.4 69 76-150 9-81 (135)
384 PF10354 DUF2431: Domain of un 79.4 7.8 0.00017 33.1 6.9 100 84-184 2-125 (166)
385 PRK05708 2-dehydropantoate 2-r 79.1 9.4 0.0002 36.1 8.1 94 80-183 3-103 (305)
386 PRK08589 short chain dehydroge 78.9 15 0.00033 33.7 9.4 73 77-152 4-90 (272)
387 cd08240 6_hydroxyhexanoate_dh_ 78.9 5.8 0.00013 37.9 6.7 89 78-182 175-272 (350)
388 PRK12548 shikimate 5-dehydroge 78.5 20 0.00044 33.5 10.1 89 62-151 109-206 (289)
389 COG3315 O-Methyltransferase in 78.5 6.6 0.00014 37.0 6.7 122 60-184 75-209 (297)
390 PRK05876 short chain dehydroge 78.3 13 0.00028 34.4 8.6 73 77-152 4-91 (275)
391 PRK08339 short chain dehydroge 78.2 12 0.00027 34.2 8.4 74 77-152 6-93 (263)
392 cd05285 sorbitol_DH Sorbitol d 78.0 7 0.00015 37.3 7.0 96 74-182 158-263 (343)
393 PRK05597 molybdopterin biosynt 77.9 7.3 0.00016 37.7 7.0 74 77-150 26-124 (355)
394 cd05279 Zn_ADH1 Liver alcohol 77.9 7 0.00015 37.8 7.0 94 75-182 180-283 (365)
395 PF02254 TrkA_N: TrkA-N domain 77.8 10 0.00022 29.7 6.8 84 82-181 1-93 (116)
396 PRK05476 S-adenosyl-L-homocyst 77.8 17 0.00036 36.2 9.5 85 77-183 210-298 (425)
397 TIGR00936 ahcY adenosylhomocys 77.8 18 0.0004 35.6 9.7 85 77-183 193-281 (406)
398 PF10237 N6-adenineMlase: Prob 77.7 9.9 0.00022 32.3 6.9 107 63-185 12-124 (162)
399 PRK08306 dipicolinate synthase 77.7 16 0.00035 34.4 9.1 87 76-182 149-239 (296)
400 cd08236 sugar_DH NAD(P)-depend 77.3 7.4 0.00016 37.0 6.9 93 75-183 156-257 (343)
401 PRK06914 short chain dehydroge 76.8 14 0.00031 33.9 8.5 72 79-151 3-88 (280)
402 PRK05867 short chain dehydroge 76.8 13 0.00029 33.6 8.2 73 77-152 7-94 (253)
403 cd08261 Zn_ADH7 Alcohol dehydr 76.6 7.4 0.00016 37.0 6.7 94 75-182 156-256 (337)
404 cd08265 Zn_ADH3 Alcohol dehydr 76.5 6.8 0.00015 38.2 6.5 96 75-182 200-305 (384)
405 TIGR02437 FadB fatty oxidation 76.4 12 0.00026 39.9 8.7 101 80-189 314-433 (714)
406 TIGR02825 B4_12hDH leukotriene 76.3 7.2 0.00016 36.8 6.5 94 74-182 134-235 (325)
407 cd01488 Uba3_RUB Ubiquitin act 76.3 11 0.00023 35.5 7.3 70 81-150 1-94 (291)
408 PRK07062 short chain dehydroge 76.3 15 0.00033 33.4 8.5 75 77-152 6-95 (265)
409 PRK07035 short chain dehydroge 76.3 15 0.00032 33.1 8.3 73 77-152 6-93 (252)
410 KOG2013 SMT3/SUMO-activating c 76.2 4.1 8.8E-05 40.4 4.6 73 78-150 11-109 (603)
411 PLN02494 adenosylhomocysteinas 76.1 11 0.00024 37.8 7.8 86 77-183 252-340 (477)
412 PRK06130 3-hydroxybutyryl-CoA 75.8 18 0.00039 34.1 9.0 94 80-181 5-112 (311)
413 PLN03209 translocon at the inn 75.6 10 0.00023 39.0 7.6 77 74-151 75-166 (576)
414 KOG2352 Predicted spermine/spe 75.5 3.2 7E-05 41.3 3.8 104 79-183 296-415 (482)
415 COG0604 Qor NADPH:quinone redu 75.3 6.6 0.00014 37.5 5.9 95 74-183 138-240 (326)
416 PF00106 adh_short: short chai 75.2 14 0.0003 30.8 7.4 70 80-151 1-87 (167)
417 cd08279 Zn_ADH_class_III Class 75.2 8 0.00017 37.3 6.5 91 76-182 180-280 (363)
418 PRK08328 hypothetical protein; 75.1 12 0.00026 33.8 7.2 32 78-109 26-59 (231)
419 PRK11730 fadB multifunctional 75.0 15 0.00032 39.3 8.9 101 80-189 314-433 (715)
420 cd08255 2-desacetyl-2-hydroxye 74.8 14 0.0003 33.8 7.9 92 75-182 94-188 (277)
421 PF03712 Cu2_monoox_C: Copper 74.8 8 0.00017 32.7 5.6 34 326-360 73-106 (156)
422 PF11899 DUF3419: Protein of u 74.7 10 0.00022 37.1 7.0 44 72-116 29-73 (380)
423 cd08234 threonine_DH_like L-th 74.7 20 0.00042 33.8 9.1 93 74-182 155-255 (334)
424 PRK06172 short chain dehydroge 74.7 18 0.00039 32.6 8.5 73 77-152 5-92 (253)
425 PLN02545 3-hydroxybutyryl-CoA 74.6 26 0.00057 32.7 9.7 99 80-187 5-122 (295)
426 PRK06194 hypothetical protein; 74.6 18 0.00039 33.3 8.6 73 77-152 4-91 (287)
427 cd08286 FDH_like_ADH2 formalde 74.6 9.3 0.0002 36.4 6.8 94 76-182 164-264 (345)
428 PRK08862 short chain dehydroge 74.6 17 0.00037 32.5 8.2 73 77-152 3-91 (227)
429 KOG1205 Predicted dehydrogenas 74.4 18 0.0004 33.7 8.3 75 77-152 10-99 (282)
430 PLN02514 cinnamyl-alcohol dehy 74.2 17 0.00037 35.0 8.6 92 77-183 179-274 (357)
431 PRK07806 short chain dehydroge 74.1 45 0.00098 29.7 11.0 104 77-183 4-133 (248)
432 cd08293 PTGR2 Prostaglandin re 74.0 12 0.00027 35.5 7.5 89 80-182 156-252 (345)
433 cd08263 Zn_ADH10 Alcohol dehyd 73.9 9.4 0.0002 36.8 6.7 91 77-183 186-286 (367)
434 TIGR02441 fa_ox_alpha_mit fatt 73.9 12 0.00026 40.0 7.9 101 80-189 336-455 (737)
435 PRK08223 hypothetical protein; 73.9 14 0.00031 34.6 7.4 73 78-150 26-123 (287)
436 cd00755 YgdL_like Family of ac 73.7 12 0.00025 34.0 6.7 33 78-110 10-44 (231)
437 PRK08762 molybdopterin biosynt 73.7 10 0.00022 37.0 6.9 34 77-110 133-168 (376)
438 PRK11154 fadJ multifunctional 73.6 18 0.00039 38.6 9.1 101 80-189 310-430 (708)
439 cd08294 leukotriene_B4_DH_like 73.4 6.8 0.00015 36.9 5.5 94 74-182 139-239 (329)
440 cd05281 TDH Threonine dehydrog 73.0 9.6 0.00021 36.3 6.5 93 77-182 162-260 (341)
441 PF02558 ApbA: Ketopantoate re 73.0 13 0.00028 30.7 6.5 86 82-182 1-99 (151)
442 PRK06124 gluconate 5-dehydroge 73.0 21 0.00046 32.2 8.5 72 77-151 9-95 (256)
443 PRK05225 ketol-acid reductoiso 72.9 5.1 0.00011 39.9 4.4 92 76-186 33-133 (487)
444 PRK08303 short chain dehydroge 72.7 26 0.00056 33.0 9.2 73 77-152 6-103 (305)
445 COG1748 LYS9 Saccharopine dehy 72.7 10 0.00023 37.0 6.5 68 80-152 2-76 (389)
446 KOG0725 Reductases with broad 72.4 35 0.00075 31.7 9.8 76 76-152 5-97 (270)
447 PRK07109 short chain dehydroge 72.3 22 0.00049 33.9 8.8 73 77-152 6-93 (334)
448 PLN02178 cinnamyl-alcohol dehy 72.2 29 0.00062 33.8 9.7 90 77-183 177-272 (375)
449 PF02826 2-Hacid_dh_C: D-isome 72.1 4.7 0.0001 34.8 3.7 91 75-182 32-125 (178)
450 PRK08324 short chain dehydroge 71.8 33 0.00072 36.4 10.6 72 77-152 420-506 (681)
451 PRK09242 tropinone reductase; 71.6 24 0.00051 31.9 8.5 74 77-151 7-95 (257)
452 PRK06522 2-dehydropantoate 2-r 71.6 30 0.00065 32.2 9.4 91 81-182 2-98 (304)
453 cd05284 arabinose_DH_like D-ar 71.3 12 0.00026 35.5 6.7 91 76-182 165-264 (340)
454 PRK08945 putative oxoacyl-(acy 71.2 27 0.0006 31.3 8.8 74 76-151 9-99 (247)
455 PRK07478 short chain dehydroge 71.2 24 0.00053 31.8 8.5 73 77-152 4-91 (254)
456 PRK07453 protochlorophyllide o 71.2 29 0.00063 32.7 9.3 72 78-152 5-91 (322)
457 PRK07890 short chain dehydroge 71.1 25 0.00054 31.7 8.5 73 77-152 3-90 (258)
458 PRK08703 short chain dehydroge 71.1 33 0.00072 30.5 9.3 59 77-137 4-66 (239)
459 PRK08213 gluconate 5-dehydroge 71.0 25 0.00054 31.8 8.5 73 77-152 10-97 (259)
460 PRK12549 shikimate 5-dehydroge 71.0 47 0.001 31.0 10.4 86 61-150 109-198 (284)
461 PRK07417 arogenate dehydrogena 70.9 20 0.00042 33.4 7.8 83 81-180 2-87 (279)
462 cd01485 E1-1_like Ubiquitin ac 70.9 19 0.00042 31.6 7.4 33 78-110 18-52 (198)
463 PF01262 AlaDh_PNT_C: Alanine 70.5 1.8 4E-05 37.0 0.7 38 77-115 18-58 (168)
464 cd08300 alcohol_DH_class_III c 70.4 14 0.00031 35.7 7.1 94 75-182 183-286 (368)
465 PRK07791 short chain dehydroge 70.3 33 0.00071 31.8 9.3 73 77-152 4-100 (286)
466 PF05050 Methyltransf_21: Meth 70.2 9 0.0002 31.9 5.0 53 84-136 1-61 (167)
467 PRK12826 3-ketoacyl-(acyl-carr 70.1 28 0.00061 31.1 8.6 73 77-152 4-91 (251)
468 KOG1208 Dehydrogenases with di 69.9 39 0.00085 32.1 9.7 75 77-152 33-122 (314)
469 TIGR02355 moeB molybdopterin s 69.8 12 0.00026 34.0 6.0 73 78-150 23-120 (240)
470 PRK07904 short chain dehydroge 69.7 23 0.0005 32.2 8.0 73 78-151 7-94 (253)
471 KOG2539 Mitochondrial/chloropl 69.6 5.2 0.00011 39.6 3.7 103 76-181 198-312 (491)
472 PRK07677 short chain dehydroge 69.6 25 0.00054 31.7 8.1 71 79-152 1-86 (252)
473 cd08242 MDR_like Medium chain 69.5 36 0.00078 31.8 9.5 90 74-182 151-243 (319)
474 PRK05866 short chain dehydroge 69.4 26 0.00057 32.7 8.4 71 78-151 39-124 (293)
475 cd08296 CAD_like Cinnamyl alco 69.3 24 0.00051 33.5 8.3 94 75-182 160-257 (333)
476 PLN02702 L-idonate 5-dehydroge 69.2 29 0.00062 33.4 8.9 96 74-182 177-283 (364)
477 cd08301 alcohol_DH_plants Plan 69.1 15 0.00032 35.5 6.9 95 75-183 184-288 (369)
478 cd08245 CAD Cinnamyl alcohol d 69.0 42 0.00091 31.5 9.9 92 75-183 159-255 (330)
479 cd01484 E1-2_like Ubiquitin ac 68.9 22 0.00048 32.2 7.4 70 81-150 1-97 (234)
480 PRK12749 quinate/shikimate deh 68.9 42 0.00092 31.4 9.6 63 60-122 105-170 (288)
481 PRK09186 flagellin modificatio 68.9 27 0.00058 31.4 8.2 74 78-152 3-91 (256)
482 COG0863 DNA modification methy 68.8 21 0.00045 33.3 7.6 48 75-123 219-267 (302)
483 PLN02989 cinnamyl-alcohol dehy 68.8 21 0.00046 33.6 7.8 72 78-151 4-84 (325)
484 PRK06196 oxidoreductase; Provi 68.8 29 0.00062 32.7 8.6 69 77-152 24-107 (315)
485 cd08277 liver_alcohol_DH_like 68.6 16 0.00034 35.3 6.9 95 75-183 181-285 (365)
486 PLN02662 cinnamyl-alcohol dehy 68.5 22 0.00048 33.3 7.8 71 78-150 3-82 (322)
487 PF05430 Methyltransf_30: S-ad 68.4 4.5 9.7E-05 32.8 2.5 54 129-182 33-88 (124)
488 PRK06249 2-dehydropantoate 2-r 68.4 20 0.00043 34.0 7.4 92 80-183 6-105 (313)
489 TIGR00853 pts-lac PTS system, 68.4 24 0.00052 27.0 6.5 53 80-151 4-57 (95)
490 cd01489 Uba2_SUMO Ubiquitin ac 68.2 26 0.00057 33.3 8.0 70 81-150 1-96 (312)
491 PRK07878 molybdopterin biosynt 68.2 15 0.00033 36.0 6.8 32 78-109 41-74 (392)
492 PRK08643 acetoin reductase; Va 68.1 28 0.00061 31.3 8.2 71 79-152 2-87 (256)
493 PRK05600 thiamine biosynthesis 67.9 18 0.00039 35.3 7.1 34 77-110 39-74 (370)
494 PRK06935 2-deoxy-D-gluconate 3 67.7 29 0.00062 31.4 8.2 72 77-151 13-98 (258)
495 PRK08217 fabG 3-ketoacyl-(acyl 67.6 32 0.00069 30.7 8.4 72 77-151 3-89 (253)
496 PRK07454 short chain dehydroge 67.6 37 0.0008 30.2 8.8 71 78-151 5-90 (241)
497 PRK07523 gluconate 5-dehydroge 67.1 31 0.00067 31.1 8.2 73 77-152 8-95 (255)
498 cd08287 FDH_like_ADH3 formalde 67.0 12 0.00027 35.5 5.8 91 76-182 166-266 (345)
499 PRK06113 7-alpha-hydroxysteroi 67.0 33 0.00071 30.9 8.4 72 77-151 9-95 (255)
500 PRK07411 hypothetical protein; 67.0 16 0.00034 35.9 6.5 73 78-150 37-134 (390)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-61 Score=441.85 Aligned_cols=312 Identities=43% Similarity=0.739 Sum_probs=290.6
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~ 117 (391)
...+.||++|+....|+.||+|.+|+.+|+.+|.++-..+++++|||+|||||+|++++|++|+++|+|||.|.+++.|+
T Consensus 20 ~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 20 TSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFAR 99 (346)
T ss_pred chhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHH
Confidence 35677999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCc
Q 016351 118 TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 196 (391)
Q Consensus 118 ~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~ 196 (391)
+.++.|++++.|+++++.++++.+| +++|+|+|||||+++..|.++..++.+..++|+|||.++|+.++++++++++..
T Consensus 100 ~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~ 179 (346)
T KOG1499|consen 100 KIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDS 179 (346)
T ss_pred HHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCch
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999998752
Q ss_pred CccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccccc
Q 016351 197 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIR 276 (391)
Q Consensus 197 ~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~ 276 (391)
...+.+.+|+ ++|||||+++.+ .....+.++.+.+++++++|+.+.++|+.++..+++
T Consensus 180 ------~~~~~i~fW~-------~Vygfdms~~~~--------~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~- 237 (346)
T KOG1499|consen 180 ------YKDDKIGFWD-------DVYGFDMSCIKK--------IAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDL- 237 (346)
T ss_pred ------hhhhhcCccc-------cccccchhhhhh--------hhhcccceeccChhHhcccceeeEEeeeeeeeccce-
Confidence 3355678894 999999999954 334568889999999999999999999999999999
Q ss_pred ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEE
Q 016351 277 EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMT 356 (391)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~ 356 (391)
.++..|++.+. +++.+|||++|||++|..... ...+.+||+|. .+.|||+|+||.|+.|+.|+.|+.|.+++.+.
T Consensus 238 ~F~s~f~l~v~-r~~~i~g~v~yFDv~F~~~~~---~~~~~fST~P~-~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~ 312 (346)
T KOG1499|consen 238 SFTSPFKLKVT-RNGYLHAFVAYFDVEFTGCHG---KKRLGFSTSPS-SPYTHWKQTVFYLENPLTVKEGEDITGTITMK 312 (346)
T ss_pred eeccceEEEEc-cCceEEEEEEEEEEeeccCCC---CCcceeecCCC-CCCceeeeEEEEecCccceecCceEEEEEEEe
Confidence 69999999999 999999999999999976511 26799999994 88999999999999999999999999999999
Q ss_pred eCCCCCeeeEEEEEEEEecc
Q 016351 357 RSKENHRLLEVEFSCEIRES 376 (391)
Q Consensus 357 ~~~~~~r~~~~~~~~~~~~~ 376 (391)
++..|+|.+++.+.|++++.
T Consensus 313 ~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 313 PNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred eCCCCCccceEEEEEecCCc
Confidence 99999999999999999998
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1.3e-50 Score=364.46 Aligned_cols=317 Identities=37% Similarity=0.617 Sum_probs=281.9
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHH
Q 016351 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDH 115 (391)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~ 115 (391)
+......||..|+++.+++.|+.|.+|+..|.++|.++...+.++.|||+|||+|+++++++++|+++|+|||.|.|+++
T Consensus 135 EesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqy 214 (517)
T KOG1500|consen 135 EESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQY 214 (517)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHH
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 116 ARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
|++.++.|.+.++|++|.|.++++++|+++|+||+|+|++.+.+|.+++.++.+. ++|+|.|.++|....++++|..+.
T Consensus 215 A~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 215 ARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred HHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence 9999999999999999999999999999999999999999999999999999987 999999999999999999999764
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016351 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
..|.+.....++|.. .+.||+|++.+..... +-|.++|.++.+++.-+...+ ....+||.+...+++
T Consensus 294 ---~Ly~E~~nkAnFWyQ-----q~fyGVdLt~L~g~a~----~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedl 360 (517)
T KOG1500|consen 294 ---QLYVEQFNKANFWYQ-----QNFYGVDLTPLYGSAH----QEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDL 360 (517)
T ss_pred ---HHHHHHHhhhhhhhh-----hccccccchhhhhhhh----hhhhccccccccccceeeccc-hHhhhhhhhcccchh
Confidence 334455567788964 5899999999855332 337789999998886655544 567899999999999
Q ss_pred cceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEE
Q 016351 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSM 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~ 355 (391)
.++..++++.+. ..|++||+++|||+.|+++ .-.+.++|+| ..+.|||.|..+.|..|+.|++|++|++++.+
T Consensus 361 h~i~iPlkF~~~-~~g~iHGLAfWFDV~F~GS-----~~~~wlsTap-~apltHwyqvrCll~~Pi~v~aGq~ltGr~~L 433 (517)
T KOG1500|consen 361 HEIDIPLKFHAL-QCGRIHGLAFWFDVLFDGS-----TVQVWLSTAP-TAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLL 433 (517)
T ss_pred eeecccceehhh-hhcceeeeeeEEEEEeccc-----eEEEccCCCC-CCCcccceeeeeeccCchhhhcCCeeeeeEEE
Confidence 778888899888 8899999999999999876 4457899999 58999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEEEEEEEec
Q 016351 356 TRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~ 375 (391)
..++. .+|+|.+...++.
T Consensus 434 iA~~~--QSY~i~i~l~~~~ 451 (517)
T KOG1500|consen 434 IANSR--QSYDITITLSAKM 451 (517)
T ss_pred EEccc--cceeEEEEEEeee
Confidence 88764 4788888877654
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=4.7e-45 Score=357.17 Aligned_cols=275 Identities=32% Similarity=0.503 Sum_probs=210.2
Q ss_pred HhhcCChHhHHHHHHHHHhcCCCC--------CCCEEEEECCcccHHHHHHHHcC-----CCeEEEEech-HHHHHHHHH
Q 016351 54 KEMLSDRVRMDAYFNSIFQNKHHF--------QGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 54 ~~ml~d~~r~~~~~~~i~~~~~~~--------~~~~VLDlGcGtG~l~~~~a~~g-----~~~V~avD~s-~~~~~a~~~ 119 (391)
+.+.+|..+|+.|.+||.+++... ++++|||||||+|.|+.++++++ +.+|+|||.| .+...++++
T Consensus 154 e~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~ 233 (448)
T PF05185_consen 154 EVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR 233 (448)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred hhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence 345799999999999998765321 25789999999999999999886 5699999999 555556677
Q ss_pred HHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQ 199 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~ 199 (391)
++.|+++++|+++++|++++.+|+++|+||||+||+++.+|. .+.++.++.|+|||+|++||+.++.|++|+++..+..
T Consensus 234 v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~ 312 (448)
T PF05185_consen 234 VNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQ 312 (448)
T ss_dssp HHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHH
T ss_pred HHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHH
Confidence 799999999999999999999999999999999999999984 5567999999999999999999999999998753211
Q ss_pred chhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccc-eeEEEEEcCCCCc--cccc
Q 016351 200 KQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTA-AVVKNIDCSTATV--DDIR 276 (391)
Q Consensus 200 ~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~dl~~~~~--~~~~ 276 (391)
. ...|. . ...+..+.+..+++...++.+ +.+++|++.+... +...
T Consensus 313 ~-------~~~~~-------~------------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~ 360 (448)
T PF05185_consen 313 E-------VRNWW-------N------------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDN 360 (448)
T ss_dssp H-------HHHHH-------G------------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGS
T ss_pred H-------HHhhc-------c------------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhh
Confidence 1 11110 0 011233555666666778888 8999998887662 2333
Q ss_pred ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC---CCCCCccceEEecCCccccCCCCEEEEEE
Q 016351 277 EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST---YNGTHWGQQVFLFRPSVRVSEGDDLNVSF 353 (391)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~---~~~~hW~q~~~~l~~p~~v~~g~~l~~~~ 353 (391)
.....++|.+. ++|++|||++||++.|++ +|.|||+|.. .+++||+|++|||++|+.|++|++|++++
T Consensus 361 ~r~~~~~F~i~-~~g~vhGfagwFd~~Ly~--------~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i 431 (448)
T PF05185_consen 361 SRSSELEFKIK-RDGVVHGFAGWFDAVLYG--------DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHI 431 (448)
T ss_dssp EEEEEEEEEBS-SSEEEEEEEEEEEEEEEC--------SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEE
T ss_pred heeeeEEEeeC-CCcEEEEEEEEEEEEeeC--------CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEE
Confidence 67788999988 999999999999999964 5999999952 26899999999999999999999998665
Q ss_pred EEEeCCCCCeeeEEEEEEEEec
Q 016351 354 SMTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 354 ~~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+|+.+++| |||||.|++
T Consensus 432 --~R~~~~~~---vWYEW~v~s 448 (448)
T PF05185_consen 432 --WRKTDDRK---VWYEWSVES 448 (448)
T ss_dssp --EEECCSTC---EEEEEEEEE
T ss_pred --EEEcCCCc---EEEEEEEeC
Confidence 78888888 999999974
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-32 Score=262.09 Aligned_cols=289 Identities=22% Similarity=0.323 Sum_probs=223.1
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC-----C--CCEEEEECCcccHHHHHHHHc---CCC--eEEEEechHHHHHHHHHHHH
Q 016351 55 EMLSDRVRMDAYFNSIFQNKHHF-----Q--GKTVLDVGTGSGILAIWSAQA---GAR--KVYAVEATKMSDHARTLVKA 122 (391)
Q Consensus 55 ~ml~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcGtG~l~~~~a~~---g~~--~V~avD~s~~~~~a~~~~~~ 122 (391)
.+-.|.+.|..|.+||..++... + ..+|+-+|+|.|.+.-...++ -.+ ++++||.++.+-...++.+.
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~ 416 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF 416 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch
Confidence 34678999999999998775432 1 246889999999986555443 222 68999999333333344666
Q ss_pred cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016351 123 NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 123 ~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~ 201 (391)
..++++|+++.+||+.+..| ++.|++|||++|.+.++|- -+..|+.+.++|||+|+.||..++.|++|+.+..+
T Consensus 417 ~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l---- 491 (649)
T KOG0822|consen 417 ECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL---- 491 (649)
T ss_pred hhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH----
Confidence 77889999999999999987 9999999999999999985 45679999999999999999999999999987533
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016351 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
|+...+. . +...| ..+.+..++.-..|++|+.+++|.+.+..+.--......
T Consensus 492 ---------~q~v~a~-~-----~~~~f-------------e~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s 543 (649)
T KOG0822|consen 492 ---------YQEVKAT-N-----DPNAF-------------EAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKS 543 (649)
T ss_pred ---------HHHHHhc-C-----Ccccc-------------ccceEEEecceeecCCCCceeEEecCCccccccccccee
Confidence 3222111 0 01122 235567777777889999999998877643322244556
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeCC
Q 016351 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSK 359 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~ 359 (391)
.+|++. ++|.+|||++|||++| +++|.||+.|.+ +.+.+|++++|||++|+.|..|++|++.| +|+.
T Consensus 544 ~eF~~~-~~~~lHGFaGYFd~~L--------YkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~--wR~~ 612 (649)
T KOG0822|consen 544 VEFKVK-SNGVLHGFAGYFDAVL--------YKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHF--WRCV 612 (649)
T ss_pred EEEecC-CCceEeecchhhhhhh--------hheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEE--EEEe
Confidence 677777 9999999999999999 568999999974 45689999999999999999999999655 8888
Q ss_pred CCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016351 360 ENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 360 ~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
++.+ |||||.|+ .++ ...=+++|..|++
T Consensus 613 d~~k---VWYEW~v~~~~~l~~~~~s~iHN~~Grsy~~ 647 (649)
T KOG0822|consen 613 DSTK---VWYEWSVESFIYLMKPSSSEIHNPNGRSYSM 647 (649)
T ss_pred CCce---eEEEEEeeeeecccCCCcccccCCCCceeec
Confidence 8878 99999998 444 5556778888875
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.95 E-value=2.4e-26 Score=224.27 Aligned_cols=292 Identities=19% Similarity=0.233 Sum_probs=196.7
Q ss_pred hcCChHhHHHHHHHHHhcCCCC---------------------------------CCCEEEEECCcccHHHHHHHHc---
Q 016351 56 MLSDRVRMDAYFNSIFQNKHHF---------------------------------QGKTVLDVGTGSGILAIWSAQA--- 99 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDlGcGtG~l~~~~a~~--- 99 (391)
+-+|...|+.|.+||..++... ...+|+-+|+|.|.|.-.+.++
T Consensus 645 FEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~ 724 (1072)
T PTZ00357 645 FERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSA 724 (1072)
T ss_pred HcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHH
Confidence 4678899999999988775210 0136899999999885544443
Q ss_pred -CCC-eEEEEech-HHHHHHHHHH-HHcCC-------CCcEEEEEcccccCCCC------------CcccEEEEcccccc
Q 016351 100 -GAR-KVYAVEAT-KMSDHARTLV-KANNL-------QDVVEVIEGSVEDIVLP------------EKVDVIISEWMGYF 156 (391)
Q Consensus 100 -g~~-~V~avD~s-~~~~~a~~~~-~~~~~-------~~~v~~i~~d~~~~~~~------------~~~D~Ivse~~~~~ 156 (391)
|.+ +|+|||.| +.+.....+. ....+ .++|++|..||+++..+ +++|+||||++|.+
T Consensus 725 ~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 725 LGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred cCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 322 79999999 6544443332 33455 34699999999998543 37999999999999
Q ss_pred ccCcchHHHHHHHHhccccC----Ce-------EEEcccceeEEeecccCcCccchhhcccc----ccchhhhhhcCccc
Q 016351 157 LLRESMFDSVICARDRWLKP----TG-------VMYPSHARMWVAPIRSGLGDQKQQDYEGA----LDDWYSFLKETKTY 221 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~----gG-------~ii~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~w~~~~~~~~~~ 221 (391)
.++|-. +..|+.+.+.||+ +| +.||..++.|++|+.+..+.+........ ...| .
T Consensus 805 GDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~~gltvP~p~---------c 874 (1072)
T PTZ00357 805 GDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAVKGLTVPPPG---------C 874 (1072)
T ss_pred ccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhhcccccCCcc---------c
Confidence 999854 5568888888875 55 59999999999999886543221100000 0000 0
Q ss_pred cccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcc----------------cccceeeEEEEE
Q 016351 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVD----------------DIREVRSKFLSS 285 (391)
Q Consensus 222 ~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~----------------~~~~~~~~~~~~ 285 (391)
...+.+ ....+.+..++....++.|+++++|.+.+.... .....+..+.|+
T Consensus 875 ~~~haa-------------~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~ 941 (1072)
T PTZ00357 875 HDHHAA-------------LNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFE 941 (1072)
T ss_pred cccchh-------------hcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEe
Confidence 000011 112345566666666788999999988654411 111345667788
Q ss_pred EEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecC---CccccCCCC---------EEEE
Q 016351 286 IRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFR---PSVRVSEGD---------DLNV 351 (391)
Q Consensus 286 ~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~---~p~~v~~g~---------~l~~ 351 (391)
+. .++++|||++||++.|++.... ..+.|||.|.+ ..+-+|++.+|||+ ++..++.|+ .|.+
T Consensus 942 v~-~d~vlHGFAGYFdAvLYkDVt~---~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~ 1017 (1072)
T PTZ00357 942 VP-PCGRCCGLAGYFSAVLYQSATA---PATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRV 1017 (1072)
T ss_pred cC-CCcceeeeeeEEEEEeecCCCc---cceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEE
Confidence 77 9999999999999999752100 12789999963 35679999999998 555566665 5665
Q ss_pred EEEEEeCCCCCeeeEEEEEEEEeccc
Q 016351 352 SFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 352 ~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
.+....+-+.+| |||||.|.-.|
T Consensus 1018 ~l~Rr~~~~e~r---VwYew~v~~~~ 1040 (1072)
T PTZ00357 1018 QLDRRTSLAEQR---VWYEWSVTYGD 1040 (1072)
T ss_pred eeeeccccccce---EEEEEEEeech
Confidence 554444447788 89999986554
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.90 E-value=5.1e-23 Score=192.05 Aligned_cols=292 Identities=21% Similarity=0.211 Sum_probs=206.2
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCC------CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC
Q 016351 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQG------KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN 124 (391)
Q Consensus 52 ~~~~ml~d~~r~~~~~~~i~~~~~~~~~------~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~ 124 (391)
...+||+|..|+..|+..|+..+...+. ..|||||+|||+|+++++++|+..|+|+|.- +|.+.|+++..+||
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence 3458999999999999999887654321 4689999999999999999999999999999 99999999999999
Q ss_pred CCCcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchh
Q 016351 125 LQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQ 202 (391)
Q Consensus 125 ~~~~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~~ 202 (391)
+.++|++|.....++... .+.|+++.+.+..-+..|+.++.+-++..+++++|...+|..++.|++++++.++..
T Consensus 114 ~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~--- 190 (636)
T KOG1501|consen 114 MSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN--- 190 (636)
T ss_pred CccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh---
Confidence 999999999999888654 468999998888888888899999999999999999999999999999999875543
Q ss_pred hccccccchhhhhh-cCcccccccc------ccCCCcchhhhhhhhcccCceeec-CCCCccccceeEEEEEcCC-CC-c
Q 016351 203 DYEGALDDWYSFLK-ETKTYYGVDM------SVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCST-AT-V 272 (391)
Q Consensus 203 ~~~~~~~~w~~~~~-~~~~~~g~dl------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~p~~~~~~dl~~-~~-~ 272 (391)
|+.+.. +.+...|+.+ +|+-.+... + ....+.. +.-++|+++...+.+||.. .. .
T Consensus 191 --------~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~-----d--~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~ 255 (636)
T KOG1501|consen 191 --------LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ-----D--SQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSN 255 (636)
T ss_pred --------hhccccccccccCCcccCCCccccCCCchhHH-----H--HHHhhcchhhheeecCcceeEEeecchhhhcc
Confidence 322211 1122222222 111110000 0 0111111 2235799999999999973 11 1
Q ss_pred ccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCC--------CCccceEEecC--Cccc
Q 016351 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--------THWGQQVFLFR--PSVR 342 (391)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~--------~hW~q~~~~l~--~p~~ 342 (391)
.+. +. .+...+. .+|++..+..|||++++. ...+.+...|.+... .||.|++++++ +...
T Consensus 256 s~~-~~--~r~~va~-~Sg~~~~~l~wwdi~mD~------~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~ 325 (636)
T KOG1501|consen 256 SEI-EE--LRPPVAV-HSGPLRSNLLWWDISMDQ------FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNR 325 (636)
T ss_pred hhh-hh--hcCcccc-cccchhheeeeeeeeecc------CcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCc
Confidence 122 11 2233345 789999999999999975 345678888864332 49999998887 3333
Q ss_pred cCCCCEEEEEEEEEeCCCCCeeeEEEEEEEEeccc
Q 016351 343 VSEGDDLNVSFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 343 v~~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
+..+...-.-+.. +-+|.+++...++.+-
T Consensus 326 i~~~ss~~~v~~~------H~~l~i~~~~h~~~~~ 354 (636)
T KOG1501|consen 326 IHNVSSLMTVFSY------HLWLYIYRTDHYHCHL 354 (636)
T ss_pred eeeccceEEEeee------eeeeEEeeeeeecccc
Confidence 3333222222211 2255666666666554
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=5.4e-18 Score=152.01 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=119.2
Q ss_pred cchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHH
Q 016351 39 DFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 39 ~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a 116 (391)
.-..+|+..+..|+....+........|++++...+...++.+|||||||||.+++.+++. |..+|+|+|+| .|+..|
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 4466888888888875544455556778887777665568999999999999999999997 66689999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++++...+..+ |+|+++|+++++++ ++||++.+ .+.+.+-.+.+..|++++|+|||||+++..
T Consensus 92 ~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 92 REKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred HHHhhccCccc-eEEEEechhhCCCCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 99999988888 99999999999998 89999996 566666667899999999999999977643
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=7.4e-17 Score=129.61 Aligned_cols=107 Identities=29% Similarity=0.358 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEEEEcc-c
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEW-M 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~~~~~~~D~Ivse~-~ 153 (391)
|+.+|||||||+|.+++.+++. ...+|+|+|+| .+++.|++++...+..++|+++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5689999999999999999993 34489999999 99999999998888888999999999 5555568899999966 2
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
...+........+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222456788999999999999998753
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=3e-17 Score=148.62 Aligned_cols=142 Identities=24% Similarity=0.260 Sum_probs=81.6
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSD 114 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~ 114 (391)
..-...|+..+..|+...-+........|++.+.+.....++.+|||+|||||.++..+++. + ..+|+++|+| .|++
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 34566777777777763333333344566666666555667889999999999999998876 3 2489999999 9999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 115 HARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|+++.+..+.. +|+++++|+++++++ ++||+|+| .+.+.+-.+....++++.|+|||||.+++.
T Consensus 87 ~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 87 VARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 999999998876 599999999999987 89999997 344444446788999999999999998754
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=1.9e-15 Score=139.82 Aligned_cols=144 Identities=20% Similarity=0.137 Sum_probs=104.2
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSD 114 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~ 114 (391)
.....+|+..+..|+...-+........|++.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+| .|++
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 34566888888888862211111123445555544445556789999999999999988875 4 2489999999 9999
Q ss_pred HHHHHHHH--cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 115 HARTLVKA--NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 115 ~a~~~~~~--~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.|+++... .....+++++++|+.+++++ ++||+|++... +.+-.+...+++++.|+|||||.+++..
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 99876542 22234599999999999877 68999998432 3333357789999999999999987653
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.63 E-value=9.1e-16 Score=135.34 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=91.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE-ccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS-EWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs-e~~ 153 (391)
.++++|||+|||-|+|+..+|+.|+ +|+|+|++ ++++.|+..+..+++. +++.+..++++... ++||+|+| |.+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 6789999999999999999999997 79999999 9999999999999987 88999999998665 89999999 433
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+-.+...++..+.+++||||.++.+..+-
T Consensus 135 ----EHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 135 ----EHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ----HccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 333467789999999999999999886653
No 12
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.62 E-value=5.1e-15 Score=128.74 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+.++++..++.++||||||.|..++.+|+.|. .|+|+|.| ..++.+++.++..+++ |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556788999999999999999999999 69999999 8899999999999987 99999999998888999999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|..+..++..+ ..+.+++.+...++|||+++..
T Consensus 99 ~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEE
Confidence 997666666655 5788999999999999997753
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.61 E-value=1.5e-14 Score=136.69 Aligned_cols=105 Identities=23% Similarity=0.276 Sum_probs=87.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.++.+|||||||+|.++..+++.|+ +|+|||.+ .+++.|++++...+...+|+++++|++++..+ ++||+|+|..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v- 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV- 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-
Confidence 3567999999999999999998877 79999999 99999998887766655699999999988655 78999998332
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+-.+...++.++.++|||||.+++...
T Consensus 208 --LeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 --IEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred --HHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 22233567899999999999999997643
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.61 E-value=1.5e-14 Score=131.74 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=106.6
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHH
Q 016351 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a 116 (391)
...+|+..+..|+...-.....+...+++.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 355777777777663222223345566666766666667889999999999999998876 3 3489999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.+..++. +++++++|+.+++++ ++||+|++... +.+......++.++.++|+|||.++..
T Consensus 87 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 87 RQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred HHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999888774 599999999887765 78999997432 223335677899999999999998753
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=7.8e-15 Score=130.10 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=88.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++.+ ++++..|+.++.++++||+|+|..
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~ 103 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTV 103 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEec
Confidence 3345668999999999999999999987 89999999 99999999999988865 899999998877777899999965
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.+++. ...+..++..+.++|+|||.++.
T Consensus 104 ~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 104 VLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred chhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 544433 33578899999999999998653
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=1.4e-14 Score=126.32 Aligned_cols=100 Identities=28% Similarity=0.386 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.+ .|++.++++++.+++.+ ++++++|+.++...++||+|+|+.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~- 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRAL- 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhh-
Confidence 457899999999999999988764 4589999999 89999999999998865 9999999998755589999999652
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..++.+++.+.++|+|||.+++..
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 135567888899999999998653
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.2e-14 Score=128.67 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=87.1
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++. +++...|+....++++||+|++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEE
Confidence 334445568999999999999999999987 79999999 8999999999888875 7888888876666678999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..+.+.+.. .....+++.+.++|+|||++++
T Consensus 101 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 101 TVVFMFLQA-GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ecccccCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 665444332 3567889999999999998553
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2e-14 Score=122.19 Aligned_cols=105 Identities=32% Similarity=0.430 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
++.+|||+|||+|.++..+++ . ...+++|+|+| .|++.|+++++.+++. +++++++|+.+++ ++++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 568999999999999999994 3 24589999999 9999999999999998 5999999999976 447999999964
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+. .+......+++.+.++|+++|+++.....
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 33 33345678899999999999999876554
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=3.4e-14 Score=124.26 Aligned_cols=100 Identities=30% Similarity=0.369 Sum_probs=85.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
++.+|||+|||+|.+++.+++. ...+|+++|++ .|++.|+++++.+++.+ ++++++|+.++...++||+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc--
Confidence 3789999999999999988874 44589999999 99999999999999977 9999999998766578999998642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..++.++..+.++|+|||.+++...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2467889999999999999886533
No 20
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.56 E-value=5.1e-15 Score=124.35 Aligned_cols=136 Identities=29% Similarity=0.406 Sum_probs=119.1
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016351 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 52 ~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
+|.++|.|..|...|..+|.+... ..+.|+|+|+|+|++.+|++ +++|+|||.+ ...+.|.++++-+|..+ ++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~e 83 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-WE 83 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-eE
Confidence 456789999999999999988643 67999999999999999988 7799999999 78899999998888866 99
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 131 ~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
++.+|.++..+ +..|+|+|+.+...+..|...+ ++.++..+|+.++.+||.....-+.|++..
T Consensus 84 vv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 84 VVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 99999999988 7899999999998888886554 567777799999999999999888888653
No 21
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=2.4e-14 Score=133.24 Aligned_cols=106 Identities=33% Similarity=0.440 Sum_probs=82.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+++.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+. ...+. ..++|
T Consensus 152 l~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~ 226 (295)
T PF06325_consen 152 LELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKF 226 (295)
T ss_dssp HHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-E
T ss_pred HHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccC
Confidence 3455554 35678999999999999999999999999999999 8899999999999999877663 22222 12899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+++++... +..+...+.++|+|||.+|.+
T Consensus 227 dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 227 DLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred CEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 99999886543 456788888999999999975
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.55 E-value=8.9e-14 Score=120.41 Aligned_cols=104 Identities=29% Similarity=0.403 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
+..+|||+|||+|.+++.+++.+.. +|+++|++ .+++.++++++.|++.+ ++++..|..+...+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 5688999999999999999998765 79999999 89999999999999988 999999987754458999999987533
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLR--ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~--e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.... ...+..++....++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 2221 12467889999999999999864
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=8.9e-14 Score=133.54 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=87.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++. ++ +|+|||+| .|++.|+++++.+++.++++++.+|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45689999999999999999986 55 89999999 99999999999999887899999999998776 79999998332
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+++ .+...++.++.++|||||.+++..
T Consensus 196 ~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2222 346788999999999999988753
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=6.3e-14 Score=129.81 Aligned_cols=116 Identities=27% Similarity=0.326 Sum_probs=87.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||||||.|.+++.+++. |+ +|+||.+| ...+.|++.++..|+.+++++...|.++++ .+|
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~f 128 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKF 128 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCC
Confidence 34555666778999999999999999999998 87 89999999 999999999999999999999999999875 489
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
|.|+|-.+..... ....+.++..+.++|+|||.++....+.
T Consensus 129 D~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 129 DRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999933322222 2357889999999999999998765443
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=3.4e-14 Score=110.07 Aligned_cols=93 Identities=29% Similarity=0.424 Sum_probs=76.1
Q ss_pred EEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCc
Q 016351 83 LDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE 160 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e 160 (391)
||+|||+|..+..+++.+..+|+++|++ ++++.++++....+ +.++++|+.+++++ +.||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999955589999999 99999998876543 67999999999887 899999995543333
Q ss_pred chHHHHHHHHhccccCCeEEEc
Q 016351 161 SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 161 ~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.....+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4678899999999999999874
No 26
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.5e-14 Score=131.69 Aligned_cols=109 Identities=31% Similarity=0.380 Sum_probs=86.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+++.+.. .++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++...++.-..+.......++||
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 3444443 3789999999999999999999999999999999 789999999999998753333333444433336999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||++.+.. .+..+...+.++|+|||.+|.+-
T Consensus 232 vIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 232 VIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 999987543 35578888999999999999765
No 27
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=1.8e-14 Score=127.93 Aligned_cols=121 Identities=23% Similarity=0.335 Sum_probs=92.7
Q ss_pred CChHhHHHHHHHHHhcCCC-CC------CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-
Q 016351 58 SDRVRMDAYFNSIFQNKHH-FQ------GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV- 128 (391)
Q Consensus 58 ~d~~r~~~~~~~i~~~~~~-~~------~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~- 128 (391)
.+..|....++-+....+. .+ +++|||+|||+|+|+..+|+.|+ .|+|||.+ .|++.|++....+...+.
T Consensus 62 mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~ 140 (282)
T KOG1270|consen 62 MNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGA 140 (282)
T ss_pred ccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccc
Confidence 3455665555555554421 22 47899999999999999999998 79999999 999999999666555443
Q ss_pred ----EEEEEcccccCCCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 129 ----VEVIEGSVEDIVLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 ----v~~i~~d~~~~~~~~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++.+.+++.+. ++||.|+| |. +.+-.++..++..+.++|||+|.+++...
T Consensus 141 ~~y~l~~~~~~~E~~~--~~fDaVvcsev----leHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 141 IAYRLEYEDTDVEGLT--GKFDAVVCSEV----LEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred cceeeehhhcchhhcc--cccceeeeHHH----HHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 778888877765 56999999 33 33445788999999999999999886543
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=8.5e-14 Score=128.61 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.++..+++.|. +|+++|+| .|++.|+++++..++.++++++++|+.++. .+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3457999999999999999999986 79999999 999999999999988778999999998864 2378999998544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.+ .....++..+.++|||||.++..
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 3333 24567899999999999998754
No 29
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.53 E-value=2.3e-13 Score=120.17 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=108.2
Q ss_pred hhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT 110 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~------~~V~avD~s 110 (391)
...|++++..|+. ++|... ...|.+.....+...++.+|||++||||-++..+.++ +. ++|+.+|+|
T Consensus 63 ~~vF~~vA~~YD~---mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din 139 (296)
T KOG1540|consen 63 HHVFESVAKKYDI---MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN 139 (296)
T ss_pred HHHHHHHHHHHHH---HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC
Confidence 4466777777655 555543 3456666666677777899999999999999988876 44 689999999
Q ss_pred -HHHHHHHHHHHHcCCCCc--EEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 111 -KMSDHARTLVKANNLQDV--VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~~~~~a~~~~~~~~~~~~--v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+|+..+++++++.++... +.++.+|+++++++ ..+|..++ .+.+-+--.++..+++++|+|||||+|.
T Consensus 140 p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 140 PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999988888765 99999999999998 89999885 3444333457788999999999999887
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=131.05 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=88.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...+...++++|||||||+|.++..+++.|+.+|+|+|.| .++..++...+..+...+|+++.+|+.+++.+++||+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~ 192 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT 192 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence 445555556789999999999999999999998789999999 7776655444333333459999999999877789999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|..+.+ +..++..+++.+++.|+|||.+++.
T Consensus 193 V~s~~vl~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLY---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhh---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99943322 3345678899999999999999875
No 31
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=9.8e-14 Score=126.82 Aligned_cols=115 Identities=30% Similarity=0.325 Sum_probs=97.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...+|.+|||||||-|.+++.+|+. |. +|+|+++| ++.+.++++++..|++++|+++..|.+++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--ccc
Confidence 45666677889999999999999999999998 56 79999999 999999999999999988999999999986 559
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|-|+|-.|...+..+ ..+.++..++++|+|||.++....+
T Consensus 139 DrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 139 DRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEec
Confidence 999994443333333 4788999999999999999866443
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=1.5e-13 Score=129.18 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|.| .+++.++++++.+++ ++++...|+....++++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 4456899999999999999999987 79999999 999999999999888 3899999988776678999999976555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++.. .....++..+.++|+|||+++.
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEE
Confidence 5433 3577899999999999998653
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=2.9e-13 Score=127.50 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
.++...+...++++|||||||+|.++..++..|+.+|+|||+| .|+..++...+..+...++.++..++.+++....||
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD 190 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence 3455555567889999999999999999998888789999999 788765443332222345889999999887667899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|+|..+.++. ..+..++.++++.|+|||.++...
T Consensus 191 ~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99995433332 356678999999999999998754
No 34
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=1.6e-13 Score=123.19 Aligned_cols=107 Identities=25% Similarity=0.343 Sum_probs=89.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~~~D~Ivse 151 (391)
....+|||||||+|.+++++|+. ...+|+|||++ .+++.|+++++.|++.++|+++++|+.++... .+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34689999999999999999998 54689999999 99999999999999999999999999997533 569999999
Q ss_pred cccccccCc---------------chHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRE---------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e---------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+..+-.... ..++.++..+.++|||||.+.+.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 853322111 24788899999999999998754
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=6.9e-13 Score=121.03 Aligned_cols=143 Identities=24% Similarity=0.257 Sum_probs=104.0
Q ss_pred cccchhhhhhhhhhhhhH-hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HH
Q 016351 37 EVDFANYFCTYAFLYHQK-EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KM 112 (391)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~ 112 (391)
..+...+|+.++..|+.. .... ......+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 88 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLLS-FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM 88 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHh-cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH
Confidence 335566888877777531 1111 11122333334444444467899999999999999999886 3689999999 89
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.+++++..+++.++++++.+|+.++..+ +.||+|++.. .+.+-..+..++..+.++|+|||.++..
T Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 89 LAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 999999988776766799999999887654 7899999733 2333345778899999999999988754
No 36
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.47 E-value=2.8e-13 Score=116.51 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=84.0
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.++...-.++||+|||.|.++..+|..+. +++++|++ ..++.|+++... .+ .|++++.|+.+..++++||+||+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCCCCCeeEEEEe
Confidence 34444557899999999999999998864 89999999 899999988864 33 499999999998777999999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
-+.|++.....+..++..+...|+|||.+|+...
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6788887766788899999999999999998643
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=3.1e-13 Score=124.19 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++..++..++++++++|+.+++++ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 36689999999999999888772 23489999999 99999999999888877899999999987654 699999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+++.. .....+++.+.+.|+|||.++...
T Consensus 134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4444443 235678999999999999998764
No 38
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=3.5e-13 Score=109.05 Aligned_cols=105 Identities=33% Similarity=0.438 Sum_probs=84.8
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~~~ 154 (391)
+.+|||+|||+|.+++.+++.+..+++++|++ ..++.|+.++..+++.++++++++|..++. ++ ++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 45899999999999999999985699999999 899999999999999888999999998875 33 899999998743
Q ss_pred cccc-----CcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLL-----RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~-----~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... .......+++.+.++|+|||.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 2111 1123567899999999999998743
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=2.3e-12 Score=105.14 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=84.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDV 147 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~ 147 (391)
..+...++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.+++.+ ++++.+|.... ..+++||+
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCCE
Confidence 3333445679999999999999999987 34689999999 99999999999888764 89999987652 12378999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++... ......+++.+.++|+|||.++...+
T Consensus 92 v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 92 VFIGGS------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEECCc------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 998431 12346789999999999999987643
No 40
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.1e-12 Score=126.18 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.++...+.+|||+|||+|.+++.+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.+...+++|
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~f 299 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 299 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCE
Confidence 4444444445689999999999999999874 4489999999 8999999999988754 2689999998664334689
Q ss_pred cEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999987543321 1223567888899999999998765
No 41
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.44 E-value=1.5e-12 Score=122.28 Aligned_cols=101 Identities=30% Similarity=0.417 Sum_probs=84.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++++|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 4678999999999999999999988899999999 89999999999999988788887764332 24789999997642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+..++..+.++|+|||.++.+.
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 234567888999999999998653
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=2.9e-13 Score=106.73 Aligned_cols=93 Identities=20% Similarity=0.379 Sum_probs=75.4
Q ss_pred EEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE-cc-c
Q 016351 82 VLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS-EW-M 153 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs-e~-~ 153 (391)
|||+|||+|..+..+++.. ..+++++|+| .|++.+++.....+. +++++++|+.+++.. ++||+|+| .. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998873 2589999999 999999999988776 499999999998654 79999999 33 3
Q ss_pred cccccCcchHHHHHHHHhccccCCe
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
.+ .....+..+++.+.++|+|||
T Consensus 79 ~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC--CCHHHHHHHHHHHHHHhCCCC
Confidence 33 344468899999999999998
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.1e-12 Score=121.01 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
+.+.+.+...+..+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+.+++++ ++|
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcE
Confidence 3444444444568999999999999999988876 89999999 89998887642 157889999988766 689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|... +.+..++..++.++.++|+|||.+++.
T Consensus 105 D~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998543 233345778999999999999999864
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=1.3e-12 Score=119.58 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|+++++..+...+++++++|+.+++++ .+|+|++...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecc
Confidence 5679999999999999988875 23479999999 99999999988777666799999999988764 6899988554
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+++.. .....+++.+.+.|+|||.+++..
T Consensus 132 l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 132 LQFLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 343332 245678999999999999998764
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=121.28 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|..+..+++....+|+|+|++ .|++.|+++... .++++++.+|+.+.+++ ++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 33445556778999999999999988877533389999999 899999987654 34599999999887766 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++.....+.. ......+++.+.++|||||.+++...
T Consensus 121 V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99832212221 12567899999999999999987543
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=1.8e-12 Score=113.22 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.+. +|+++|++ .+++.++++++.++.. ++++.+|..+.. .++||+|++++..+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV-RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc-CCcccEEEECCCCC
Confidence 4567899999999999999999887 89999999 9999999999988864 899999987754 46899999976432
Q ss_pred cccC------------------cchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLR------------------ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~------------------e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.... ...+..+++.+.++|+|||.++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 1111 1125678899999999999987643
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=1.4e-12 Score=120.54 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. .++++++|+.++...++||+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~ 92 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDV 92 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceE
Confidence 3444555677899999999999999998872 2389999999 899888652 27899999988754479999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|..+.+++ .+...++.++.+.|||||.+++.
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9996543333 34678899999999999998865
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=3.5e-12 Score=113.86 Aligned_cols=108 Identities=29% Similarity=0.273 Sum_probs=83.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|..+....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 344555555567789999999999999888875 2 3489999999 99999999999999887799999999875333
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+||+|++..... .+...+.+.|+|||+++..
T Consensus 141 ~~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAAS---------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcc---------hhhHHHHHhcCcCcEEEEE
Confidence 6899999854211 2234567889999998753
No 49
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=1.5e-12 Score=117.92 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=85.2
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
++|||||||+|.++..+++.. ..+|+|+|+| .+++.|+++++..++.++++++..|+.+.+.+++||+|++..+.+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999888863 3489999999 89999999999999988899999999766556889999984332222
Q ss_pred cCcchHHHHHHHHhccccCCeEEEccc
Q 016351 158 LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.....+++.+.++|+|||.+++..
T Consensus 81 ---~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 81 ---KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 346789999999999999998654
No 50
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=3.6e-12 Score=115.36 Aligned_cols=105 Identities=30% Similarity=0.339 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.++.+|+++|++ .+++.++++++.+++. ++++++|+.+....++||+|++++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~npP- 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNPP- 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECCC-
Confidence 34568999999999999999998877689999999 8999999999988873 8999999877533478999999863
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+....+ ..+..+++.+.++|+|||+++..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 221111 12456788889999999998853
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=5.6e-12 Score=110.92 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=83.2
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
..+...++.+|||+|||+|.+++.+++.+ ..+|+++|++ .+++.|+++++.+++.+ ++++.+|... .++++||+|+
T Consensus 25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~-~~~~~~D~v~ 102 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI-ELPGKADAIF 102 (187)
T ss_pred HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh-hcCcCCCEEE
Confidence 33444567899999999999999998874 3589999999 89999999999888754 9999998753 3457899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.... ..+..++..+.+.|+|||.++..
T Consensus 103 ~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 103 IGGSG------GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ECCCc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 85321 13567888899999999998864
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=3e-12 Score=121.54 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=92.5
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+..+..|++. +......+...+.+.+... ..++.+|||||||+|.+++.+++. +..+|+++|.| .|++.|+++
T Consensus 79 ~y~~lA~~YD~~--~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 79 FYRFLSIVYDHI--INPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred EccceeeecCCC--eecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh
Confidence 567777777761 2212223333333333222 235679999999999999888775 44589999999 999999887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... .+++++.+|+.++.++ +.||+|++....+.+ .+...+++++.++|+|||.+++
T Consensus 157 ~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 157 EPL----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred hhc----cCCeEEeccHHhCCCCCCceeEEEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 643 2388999999998765 789999984322222 2356789999999999999875
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=4.5e-12 Score=114.40 Aligned_cols=135 Identities=24% Similarity=0.229 Sum_probs=97.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~ 119 (391)
.|+..+..|+...+.........+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .++..++++
T Consensus 4 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~ 83 (223)
T TIGR01934 4 MFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK 83 (223)
T ss_pred HHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHH
Confidence 45555555555433322222234444555544445778999999999999999988865 389999999 888888887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. ...+++++.+|+.+...+ ++||+|++.. .+.+...+..+++.+.++|+|||.++..
T Consensus 84 ~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 84 SE---LPLNIEFIQADAEALPFEDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred hc---cCCCceEEecchhcCCCCCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 65 334589999999987655 6899999743 2333445778899999999999998854
No 54
>PRK05785 hypothetical protein; Provisional
Probab=99.40 E-value=1.9e-12 Score=117.25 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=87.8
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016351 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
-...|+..+..|+....+........|++.+.+.+. ..++.+|||||||||.++..+++....+|+|+|+| +|++.|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a 90 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN 90 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence 356788888888764221111112233332222211 12367999999999999999988732389999999 999998
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCe
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
++. ..++++|+++++++ ++||+|++.. .+.+-.+++..++++.|+|||..
T Consensus 91 ~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 91 LVA---------DDKVVGSFEALPFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Hhc---------cceEEechhhCCCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 753 24578899998876 8999999843 23333467889999999999953
No 55
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=4.7e-12 Score=118.49 Aligned_cols=107 Identities=26% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.+++.++|+++++|+.+....++||+|+|++. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP-y 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP-Y 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC-C
Confidence 45789999999999999999863 3489999999 9999999999999998789999999865322358999999863 1
Q ss_pred cc-----------cCc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FL-----------LRE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~-----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. .++ .....++..+.++|+|||.++....
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 011 1235678888999999999986654
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=5e-12 Score=112.24 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=85.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCccc
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D 146 (391)
..+...++.+|||+|||+|.+++.+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|..+.. ..++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3445567899999999999999998875 3 3589999999 999999999999997667999999987742 236899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|++.. ....+..+++.+.+.|+|||.++..
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999742 1124677899999999999998853
No 57
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.39 E-value=3.8e-12 Score=117.16 Aligned_cols=94 Identities=39% Similarity=0.524 Sum_probs=77.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+.+.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-
Confidence 4678999999999999999998888789999999 89999999999998865566554432 79999986532
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+..++..+.++|+|||.++.+
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13556788899999999999965
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=4.6e-12 Score=114.02 Aligned_cols=106 Identities=25% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++... .+|+++|++ .+++.|+++++.+++.+ ++++++|..+.... .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence 3444555566789999999999999999998742 369999999 99999999999999854 99999999775332 6
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|+++... ..+.+.+.+.|+|||+++..
T Consensus 146 ~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 89999975321 12334566789999998754
No 59
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=4.3e-12 Score=118.42 Aligned_cols=105 Identities=32% Similarity=0.385 Sum_probs=86.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
..++.+|||||||+|..++.+++. +. .+|+++|++ .|++.|+++....++. +++++.+|+.+++++ +.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEc
Confidence 356789999999999988877765 54 379999999 9999999999988885 489999999988765 689999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.+.. .....+++++.++|+|||++++..
T Consensus 154 ~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 543332 245678999999999999998754
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=3e-12 Score=118.52 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=83.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++..+++||+
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccE
Confidence 444444556789999999999999988876 34589999999 8999998764 238999999988765579999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|....+.+ .+...++..+.+.|+|||.++..
T Consensus 97 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 9996543333 34567899999999999998875
No 61
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.37 E-value=2.1e-12 Score=108.41 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=89.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE----cc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS----EW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivs----e~ 152 (391)
.+|||+|||.|.+...+++.|.. ..+|||.| .+++.|+.+++++++++.|+|.+.|+.+.. .+++||+|+- +.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 38999999999999999999765 49999999 899999999999999999999999998854 3489999986 22
Q ss_pred cccccc-CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 153 MGYFLL-RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 153 ~~~~~~-~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+.-... ....+..++..+.++|+|||++++..+++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 221111 1123466788899999999999988777654
No 62
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=8.4e-12 Score=117.87 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=83.7
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
.+|||+|||+|.+++.+++.. ..+|+++|+| .+++.|+++++.+++.++|+++++|+.+...+++||+|+|++. |..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP-yi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP-YVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC-CCC
Confidence 689999999999999998873 4589999999 9999999999999998889999999866332368999999863 110
Q ss_pred -----------cCc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 158 -----------LRE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 158 -----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.++ .....++..+.++|+|||.++....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 011 1245778888999999999986543
No 63
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=7.8e-12 Score=112.11 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|+++++.+++.+ ++++++|......+ .
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCcCC
Confidence 34445555667899999999999999988876 32 489999999 99999999999988854 99999998765433 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|++... . + .+...+.+.|+|||+++..
T Consensus 145 ~fD~I~~~~~---~--~----~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAA---G--P----DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCC---c--c----cchHHHHHhhCCCcEEEEE
Confidence 8999998431 1 1 2233556689999998753
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.36 E-value=5.9e-12 Score=112.06 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=82.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCC--CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIV--LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~~--~~-~~~D~Ivse 151 (391)
++.+|||+|||+|.++..+++. ...+|+|+|+| .+++.|+++++.+++.+ ++++++|+ ..+. ++ +.||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEEE
Confidence 5678999999999999988876 34479999999 99999999999988854 99999999 6654 43 789999985
Q ss_pred ccccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....... +. .....+++.+.++|+|||.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 3221111 00 12467899999999999999864
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=9.3e-12 Score=125.36 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
..++.+|||||||+|.++..+++....+|+|+|+| .++..|+++.. +...+++++++|+.+.+++ ++||+|+|..+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 34678999999999999988888633389999999 99999988765 4445699999999988766 68999999432
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.. +-.+...++.++.++|+|||.+++..
T Consensus 342 l~---h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 IL---HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cc---ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 22 22356788999999999999998764
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.34 E-value=9.4e-12 Score=125.30 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivs 150 (391)
..++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++....+. +++++++|+.+++ ++ ++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998887765 34589999999 899999988766553 3889999998875 33 78999998
Q ss_pred cccccccc----------CcchHHHHHHHHhccccCCeEEEccc
Q 016351 151 EWMGYFLL----------RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~----------~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+.+.+. ....+..+++++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65433221 12356788999999999999998754
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.33 E-value=1.4e-11 Score=111.27 Aligned_cols=104 Identities=23% Similarity=0.282 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .|+..|+++...++..+++++.++|+.++. ++||+|++..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l 129 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVL 129 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHH
Confidence 34678999999999999999998876 89999999 999999999988887667999999998875 789999983322
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+... ...+..++..+.+++++++++...
T Consensus 130 ~~~~-~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 130 IHYP-ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2222 234667788888888877766543
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=118.34 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=82.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
...+|||+|||+|.++..+++.+. .+|+++|++ .+++.|+++++.+++. .+++..|+.+. .+++||+|+|++..+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fDlIvsNPPFH 272 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFDMIISNPPFH 272 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCccEEEECCCcc
Confidence 345899999999999999998743 489999999 8999999999999886 57788887653 357899999987533
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLR--ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~--e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... ......++..+.++|+|||.+++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2211 134678899999999999998764
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.33 E-value=1.8e-11 Score=114.86 Aligned_cols=107 Identities=27% Similarity=0.349 Sum_probs=84.8
Q ss_pred CEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
.+|||+|||+|.+++.+++... .+|+|+|+| .+++.|+++++.+++.++++++++|+.+.....+||+|+|++. +..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP-yi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP-YID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC-CCC
Confidence 6899999999999999998743 489999999 8999999999999998779999999876422248999999752 111
Q ss_pred -----------cCc------------chHHHHHHHHhccccCCeEEEccccee
Q 016351 158 -----------LRE------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 158 -----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.++ .....++..+.++|+|||.+++.....
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 011 135577888889999999998765543
No 70
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=1.4e-11 Score=119.91 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=88.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~-----~~~~~D~Ivs 150 (391)
++++|||+|||+|.+++.++..|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999998887788899999999 9999999999999996 46999999998752 1358999999
Q ss_pred ccccccccCc-------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 151 EWMGYFLLRE-------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 151 e~~~~~~~~e-------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++.. +.... .....++....++|+|||.++.+.++.++
T Consensus 300 DPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 300 DPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred CCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 9853 22221 12445556678999999999977665443
No 71
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=3.8e-13 Score=105.57 Aligned_cols=94 Identities=24% Similarity=0.334 Sum_probs=60.0
Q ss_pred EEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEEccccccc
Q 016351 83 LDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---~~~~~~D~Ivse~~~~~~ 157 (391)
||||||+|.++..+++. ...+++++|+| .|++.|+++.......+ ...+..+..+. ..+++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888887 33489999999 99989988888876543 34444433332 223699999985443443
Q ss_pred cCcchHHHHHHHHhccccCCeEE
Q 016351 158 LRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
..+..+++.+.++|+|||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 46789999999999999975
No 72
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=3.3e-11 Score=102.98 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=90.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
.....+...++.+++|||||||.+++.++..+ ..+|+|||.+ ++++..++|+++.+.++ ++++.++..+.-.. .++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcCCCCC
Confidence 34455667788999999999999999999764 4589999999 99999999999999765 99999999886333 379
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|.|+. +-. ..++.+++.+...|+|||+++....+
T Consensus 104 daiFI---GGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 104 DAIFI---GGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CEEEE---CCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 99995 322 35778999999999999999966544
No 73
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.31 E-value=2e-11 Score=111.77 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...+..+++++|||||||.|..+..++++|++.|+|+|.+ ......+...+..+....+.++..-+++++..+.||+
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDT 185 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCE
Confidence 455666678999999999999999999999999999999999 5443333333333334445666567777765689999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|-.+.|+ ....-..+..++..|++||.+|..
T Consensus 186 VF~MGVLYH---rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 186 VFSMGVLYH---RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEEeeehhc---cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 999444333 234556788899999999998744
No 74
>PRK08317 hypothetical protein; Provisional
Probab=99.30 E-value=3.5e-11 Score=109.64 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.+++.+...+...++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.++++... ...+++++..|+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCC
Confidence 344455555666678899999999999999888763 3589999999 889999887332 23459999999988765
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+ ++||+|++..+... ......+++.+.++|+|||.++....
T Consensus 84 ~~~~~D~v~~~~~~~~---~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQH---LEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhc---cCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 5 78999998543222 23467789999999999999886643
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=2.2e-11 Score=116.69 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=91.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
...++.......++.+|||+|||+|.+++.++..++ +|+|+|++ .|+..|+++++.+++.+ ++++++|+.+++.+ +
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 334444444456778999999999999988888776 79999999 99999999999999987 89999999998765 7
Q ss_pred cccEEEEcccccc---ccCc---chHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYF---LLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~---~~~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|++++.-.. ...+ .....++..+.+.|+|||.++..
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 8999999864211 1111 23577899999999999988743
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=1.3e-11 Score=105.70 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=80.8
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCC-CC-CcccEEEEccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIV-LP-EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~-~i~~d~~~~~-~~-~~~D~Ivse~~~~ 155 (391)
..||+||||||..-.+.-.....+|+.+|.+ .|-+.|.+.++++...+ ++ |+.++.++++ ++ +++|+||+-.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tl--- 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTL--- 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEE---
Confidence 4589999999987665554434489999999 89999999998885544 66 9999999987 44 8999999843
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+....+....|.+.+|+|+|||++++-
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3555556788899999999999998854
No 77
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.30 E-value=3.5e-11 Score=106.24 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.+++.++..++.+|+++|.+ .+++.|+++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 3567999999999999997666677799999999 8999999999999986 4999999987742 1257999999985
Q ss_pred cccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 154 GYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
|. .+....+++.+. .+|+|+++++.+..
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 21 123344444443 45889998886644
No 78
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=2.2e-11 Score=108.89 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QD 127 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~ 127 (391)
+..+.+.+... ...++.+|||+|||.|..+..+|+.|. +|+|||+| .+++.+.+ ++++ ..
T Consensus 20 ~~~l~~~~~~l-~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPAL-GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 34444444332 123567999999999999999999999 69999999 77776533 2222 23
Q ss_pred cEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 128 VVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 128 ~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+++++|+.++... ++||.|+...+...+ .......++..+.++|+|||.++.
T Consensus 95 ~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 95 NIEIFCGDFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ceEEEEccCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999987642 679999874432333 334567789999999999997654
No 79
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=4.4e-11 Score=108.97 Aligned_cols=110 Identities=30% Similarity=0.398 Sum_probs=86.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~ 144 (391)
+.+.......++.+|||||||+|.++..+++.+. +|+++|++ .++..|++++...+.. ++++..++.++. ..++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcCCC
Confidence 3444444455778999999999999999998876 79999999 8999999988877663 888888888764 3379
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|++..+ +.+......++..+.++|+|||.+++.
T Consensus 115 fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 115 FDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999998432 223335677899999999999998865
No 80
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.29 E-value=1.2e-11 Score=129.45 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=88.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999999999998889999999 9999999999999997 57999999987742 2468999999874
Q ss_pred ccccc--------CcchHHHHHHHHhccccCCeEEEcccc
Q 016351 154 GYFLL--------RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~~~--------~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..... .......++..+.++|+|||+++.+.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32111 112345677888899999999887644
No 81
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.28 E-value=3e-11 Score=117.57 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=83.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+.+.+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++++ ++. +++...|..++ +++||.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l--~~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL--NGQFDR 231 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc--CCCCCE
Confidence 444455567889999999999999999886 55 89999999 99999998874 332 88899998776 478999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..+..... ...+..+++.+.++|||||.++...
T Consensus 232 Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99854333222 2246788999999999999998753
No 82
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=4.4e-11 Score=113.55 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.+.+.....+..+|||||||+|.++..+++.. ..+++++|...+++.++++++..++.++|+++.+|+.+..++ .+|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCC
Confidence 334444444566899999999999999999874 347999998888999999999999998999999999875555 479
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|++..+.+... +.....+++.+.+.|+|||++++...
T Consensus 218 ~v~~~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 987533323222 22346789999999999999987653
No 83
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.28 E-value=1.1e-11 Score=105.88 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=74.7
Q ss_pred HHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CC
Q 016351 66 YFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LP 142 (391)
Q Consensus 66 ~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~ 142 (391)
+.+.+.+..+ ..++.+|||||||+|.++..+++.|. +|+|+|++ .+++. .. +....-+..... .+
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc
Confidence 3344444332 45678999999999999999999988 89999999 77766 11 233332222322 23
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|+|..+.+.+ .++..++..+.++|||||.+++...
T Consensus 77 ~~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 77 GSFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SSEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred cchhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 899999995433333 3578899999999999999986644
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.8e-11 Score=110.15 Aligned_cols=114 Identities=27% Similarity=0.328 Sum_probs=88.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.++...+.+|||+|||.|.+++.+++.. ..+|+-+|.| ..++.|+++++.|++++. .++..|..+-. .++|
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~kf 225 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGKF 225 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-cccc
Confidence 445566665556699999999999999999984 5689999999 889999999999999874 67777765532 3599
Q ss_pred cEEEEccccccccCc--chHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e--~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|||++..+-.... ..-..++....+.|++||.+.+.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 999999854432211 11247889999999999987654
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=4.8e-11 Score=104.81 Aligned_cols=106 Identities=33% Similarity=0.400 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
.++++|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++..+++.++ +.++++|+.+....++||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4668999999999999999998864 89999999 899999999999888665 88999998774433689999986532
Q ss_pred ccc------------------cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFL------------------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~------------------~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... .....+..++.++.++|+|||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 110 00122566789999999999988754
No 86
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=7.7e-11 Score=104.48 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=83.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~~~ 144 (391)
.+...+...++.+|||+|||+|.++..+++. ...+|+++|++ .+++.|+++++.+++.+ ++++.+|+.+. . ....
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhCCCC
Confidence 3444455557789999999999999998875 33589999999 89999999999988854 99999998652 1 2245
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|.++.+. ...+..++..+.++|+|||.++....
T Consensus 110 ~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 67776532 12456789999999999999886643
No 87
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=7.4e-11 Score=106.74 Aligned_cols=120 Identities=31% Similarity=0.377 Sum_probs=92.3
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
+..|.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .++..+++++..++.. ++++...|+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 4556666666665432234578999999999999999988876 69999999 8999999988887763 3899999988
Q ss_pred cCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 138 DIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... ++||+|++..+ +.+......++..+.++|+|||.+++.
T Consensus 104 ~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 76533 78999998432 233345678899999999999998764
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.27 E-value=6.5e-11 Score=106.27 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|+++++.+++.+ ++++.+|..+...+ ++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCc
Confidence 3444455556778999999999999998888754 89999999 99999999999998876 99999998664323 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++... ...+...+.+.|+|||.++..
T Consensus 146 D~I~~~~~---------~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAA---------APEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CEEEEccC---------chhhhHHHHHhcCCCcEEEEE
Confidence 99998531 122344567889999998753
No 89
>PRK04266 fibrillarin; Provisional
Probab=99.27 E-value=5.6e-11 Score=107.21 Aligned_cols=103 Identities=22% Similarity=0.211 Sum_probs=78.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCccc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVD 146 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D 146 (391)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .+|.++.+|+.+. .++++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 355667889999999999999999986 33489999999 8998887776643 3389999998752 2346799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+++... ......++..+.++|||||.+++.
T Consensus 144 ~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99986421 112234678899999999998875
No 90
>PLN03075 nicotianamine synthase; Provisional
Probab=99.27 E-value=7.3e-11 Score=109.30 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=83.4
Q ss_pred CCCEEEEECCcccHH-HHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGIL-AIWSA-QA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l-~~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
++++|+|||||.|.+ ++.++ ++ ...+++++|++ ++++.|++.++. .++.++|+|..+|+.+.... ++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998755 34444 33 34479999999 999999999965 88988999999999886433 789999997
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.++ . ......+++.+.+.|+|||.++...+
T Consensus 203 ALi~~-d-k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 ALVGM-D-KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ccccc-c-cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 43332 1 13567899999999999999997653
No 91
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=5.4e-11 Score=114.84 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=91.1
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
+-....++.+.+.+...+. ++.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|+++++.++. +++++++
T Consensus 232 LIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred cCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 3344456666666655432 4568999999999999988875 45589999999 999999999998875 4999999
Q ss_pred ccccCCC--CCcccEEEEccccccccC--------------------c---chHHHHHHHHhccccCCeEEEcccc
Q 016351 135 SVEDIVL--PEKVDVIISEWMGYFLLR--------------------E---SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~--~~~~D~Ivse~~~~~~~~--------------------e---~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+.+... .++||+|+|++. +.... + .....++..+.++|+|||.++....
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred chhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9876433 357999999874 22110 0 1234667777889999999875443
No 92
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.1e-11 Score=99.85 Aligned_cols=93 Identities=33% Similarity=0.348 Sum_probs=73.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.....+++.|+|+|||||.|++.++-.|+.+|+|+|++ ++++.+++++.+ +...|+|+.+|+.++. .++|.++.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 33456889999999999999999999999999999999 999999999998 3345999999999986 679999998
Q ss_pred cccccccCcchHHHHHHH
Q 016351 152 WMGYFLLRESMFDSVICA 169 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~ 169 (391)
+..-..-...+.+-+..+
T Consensus 116 PPFG~~~rhaDr~Fl~~A 133 (198)
T COG2263 116 PPFGSQRRHADRPFLLKA 133 (198)
T ss_pred CCCccccccCCHHHHHHH
Confidence 642222222455544444
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.4e-11 Score=110.79 Aligned_cols=120 Identities=27% Similarity=0.357 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~ 139 (391)
.++.+.+.+......... +|||||||||.+++.+++.+. ..|+|+|+| .+++.|+++++.+++ .++.++.+|..+-
T Consensus 95 dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~ 172 (280)
T COG2890 95 DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP 172 (280)
T ss_pred chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc
Confidence 455555554422222222 799999999999999999864 389999999 999999999999999 5577777765552
Q ss_pred CCCCcccEEEEccccccccC-----------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 140 VLPEKVDVIISEWMGYFLLR-----------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~-----------e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..++||+|||++. |.... | .....++..+.+.|+|||.++....
T Consensus 173 -~~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 173 -LRGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred -cCCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 2369999999873 22211 1 1346777888899999998886654
No 94
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.26 E-value=1.2e-11 Score=116.70 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCCCcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.++.+|||||||+|.+++.+++.|. +|+|+|+| .|++.|+++.+..+. ...+++...|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3568999999999999999999886 79999999 999999999876522 13488999998765 4789999984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+..++..+ ....++..+.+ +.++|++|
T Consensus 220 ~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 332222222 23455666654 46677655
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=4.6e-11 Score=120.28 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+....++||+|+|++. |.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPP-Yi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPP-YI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCC-CC
Confidence 468999999999999988865 44589999999 8999999999999988889999999865322368999999763 21
Q ss_pred cc------------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 157 LL------------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 ~~------------~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. +| .....++..+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 11 1234567788899999999987644
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=4.8e-11 Score=108.50 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~-~~~~D 146 (391)
.+.++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++.+++.++|+++.+|+.+.- . .++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45689999999999988877765 35589999999 899999999999999999999999997741 1 26899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- ......++..+.++|+|||+++....-+.
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 9998642 12345678888899999999887655433
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=3.7e-11 Score=106.32 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=81.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~~D~Ivse 151 (391)
...+|||||||+|.++..+++. ...+|+|+|++ .+++.|++++...+++ +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4468999999999999988886 34489999999 9999999999998887 4999999998753 33 589999975
Q ss_pred cccccccC-----cchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~-----e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
........ .-....++..+.++|||||.+++.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 42221110 011256889999999999998754
No 98
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.25 E-value=2e-11 Score=105.46 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=87.8
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
..++......|.|||||+|..+..+++. +...|+|+|.| +|++.|++... + ++|..+|+.++..+.+.|+|+
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~-~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D-ATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C-CceecccHhhcCCCCccchhh
Confidence 3455556689999999999999999887 55589999999 99998866542 2 899999999998889999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++.+.+.+.. ...++..+...|.|||.+-........
T Consensus 98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9877666653 356788888899999998766554444
No 99
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=3.6e-11 Score=121.08 Aligned_cols=112 Identities=21% Similarity=0.390 Sum_probs=85.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-Cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~~~~-~~ 144 (391)
.+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++. ++...+++++++|+.. ++++ ++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCC
Confidence 344455555678999999999999999998865 89999999 898876543 2223459999999964 3444 78
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
||+|+|..+.+++..+ .+..+++.+.++|+|||++++...
T Consensus 104 fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 104 VDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999997755555432 467889999999999999987654
No 100
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.24 E-value=2.4e-11 Score=112.45 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHcCC------CeEEEEech-HHHHHHHHHHHH----c-------------------
Q 016351 78 QGKTVLDVGTGSGI----LAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKA----N------------------- 123 (391)
Q Consensus 78 ~~~~VLDlGcGtG~----l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~----~------------------- 123 (391)
++.+|||+|||||. +++.+++.+. .+|+|+|+| .|++.|++.+-. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 6666766532 379999999 999999875310 0
Q ss_pred ---CCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 124 ---NLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 124 ---~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.++|+|.+.|+.+..++ ++||+|+|..+..++.. .....++..+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 1224699999999997764 89999999544333332 3456789999999999999986543
No 101
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.1e-10 Score=102.53 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--C-CcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--P-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~--~-~~~D~Ivs 150 (391)
.++.+|||++||+|.+++.++..|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . + . ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999899999999 89999999999999987799999999553 1 1 1 24789888
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~~ 185 (391)
++.... .....++..+ ..+|+++|+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 874322 1233334333 468999998886644
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-10 Score=104.06 Aligned_cols=107 Identities=29% Similarity=0.302 Sum_probs=93.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.|.......++.+|||.|.|+|.++..+|++ | ..+|+.+|+. +.++.|++|++..++.++|++..+|+.+...++.|
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v 164 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV 164 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence 3556666789999999999999999999986 4 3699999999 99999999999999999999999999998777899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|.|+.+.. +...++..+.+.|+|||.++..
T Consensus 165 Dav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 165 DAVFLDLP--------DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred CEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEE
Confidence 99998653 3567889999999999988744
No 103
>PRK04457 spermidine synthase; Provisional
Probab=99.21 E-value=1e-10 Score=108.16 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~Ivse~~ 153 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++.+...+..++++++.+|..+. ..+++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4578999999999999988776 44589999999 99999999887666556799999998764 22468999999764
Q ss_pred ccc-ccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYF-LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~-~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... ....-....++..+.+.|+|||+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 321 111112367899999999999999864
No 104
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.21 E-value=1e-10 Score=106.63 Aligned_cols=99 Identities=26% Similarity=0.337 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+++++|++ .++..+++... .+++++.+|+.+.+++ ++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 3457899999999999999998753 468999999 88888877654 2489999999988755 78999998544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ +..++..++..+.++|+|||.+++.
T Consensus 108 l~---~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 LQ---WCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEEEE
Confidence 33 2335678899999999999998865
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=107.79 Aligned_cols=121 Identities=25% Similarity=0.300 Sum_probs=88.5
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
..++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|+++++ +....+++++.+|+.+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE 169 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence 3345555555544444566899999999999999999874 4589999999 89999999988 4444569999999866
Q ss_pred CCCCCcccEEEEcccccccc------------C------------cchHHHHHHHHhccccCCeEEEcc
Q 016351 139 IVLPEKVDVIISEWMGYFLL------------R------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~~~~D~Ivse~~~~~~~------------~------------e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....++||+|++++. +... + ......++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 433378999999753 1110 0 012356777788999999998863
No 106
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.21 E-value=2e-10 Score=105.67 Aligned_cols=118 Identities=24% Similarity=0.248 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
+.+.+.+...+. ..+.+|||+|||+|.++..+++. ...+|+|+|++ .+++.|+++++.+++. +++++++|+.+...
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc
Confidence 334444444332 24468999999999999999987 34489999999 9999999999999886 49999999977433
Q ss_pred CCcccEEEEccccccc------cC-----c------------chHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFL------LR-----E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~------~~-----e------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++||+|++++.-... .. + .....+++.+.++|+|||.++..
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4789999997642210 00 0 01246778889999999998864
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=99.20 E-value=9.1e-11 Score=104.71 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.+.+|||+|||+|.+++.+++. ...+|+++|++ .++..|+++.. .+.++++|+....+.++||+|||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999988874 23489999999 89999987653 2889999998766667999999988
Q ss_pred ccccccCc---------chHHHHHHHHhccccCCeEEEcccce
Q 016351 153 MGYFLLRE---------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~~~~e---------~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.-.-.... .....++..+.+++++|+.++|...-
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 53211111 12455777777888999988887543
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.2e-10 Score=114.18 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ |+++++|+.++...++||+|++
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEE
Confidence 34457789999999999999888874 23489999999 99999999999999864 9999999988764478999998
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 e~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++...... ... ....++..+.++|+|||+++.+.+++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 75422211 001 123578899999999999998766554
No 109
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.19 E-value=1e-10 Score=112.47 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=93.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||+-|-||.+++.+|..||++|+.||+| ..++.|+++++.||+. +++.++++|+.++- -..+||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3589999999999999999999999999999999 9999999999999995 56899999998852 125999999
Q ss_pred Ecccccccc------CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLL------RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~------~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.++..+.-. ...+...++..+.++|+|||+++.+.+....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 998644321 1134567778889999999999988776554
No 110
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-10 Score=101.32 Aligned_cols=104 Identities=24% Similarity=0.280 Sum_probs=83.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.+.+.+...++.+|||||||+|..+..+|+... +|++||.. ...+.|+++++..|+.| |.++++|-..-..+ .+||
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence 455566677889999999999999999999855 89999999 89999999999999988 99999998775434 8999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|+...-.. ..++.++ +.|++||+++.-
T Consensus 141 ~I~Vtaaa~-----~vP~~Ll----~QL~~gGrlv~P 168 (209)
T COG2518 141 RIIVTAAAP-----EVPEALL----DQLKPGGRLVIP 168 (209)
T ss_pred EEEEeeccC-----CCCHHHH----HhcccCCEEEEE
Confidence 999743211 1234444 458999998743
No 111
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=1.4e-10 Score=104.17 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=77.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~i~~d~~~~~~ 141 (391)
.++.+|||+|||.|..++.+|+.|. +|+|||+| ..++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3567999999999999999999999 69999999 77776532 3332 2458999999998854
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 142 ~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. ..||+|+...+...+. ......++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence 3 5899999755433333 3456788999999999998644
No 112
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.19 E-value=1.7e-10 Score=106.94 Aligned_cols=109 Identities=23% Similarity=0.360 Sum_probs=83.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC----CCCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV----LPEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~----~~~~~D~Ivse 151 (391)
++++|||+-|-||.+++.++..||++|+.||.| .+++.|+++++.|+++ ++++++..|+.+.- -.++||+||++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 578999999999999999999999999999999 9999999999999986 67999999987631 23699999999
Q ss_pred cccccccC---cchHHHHHHHHhccccCCeEEEcccce
Q 016351 152 WMGYFLLR---ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~---e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+..+.-.. +.+...++..+.++|+|||.++.+.++
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 86443221 124566788888999999998876554
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=2.1e-10 Score=106.39 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+++.+ |++++.|...+... ++||.|++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEE
Confidence 3457789999999999999988875 2 3489999999 99999999999999865 99999998876433 67999999
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 e~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++..+... .+. ....++..+.++|+|||+++.+.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 86533221 011 124588888999999999986655533
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.17 E-value=3.3e-10 Score=104.16 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 62 RMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
.++.+.+.+...+.. ....+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555544443322 22358999999999999998875 33489999999 99999999998876 4789999876
Q ss_pred CC---CCCcccEEEEccccccc------c-----Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IV---LPEKVDVIISEWMGYFL------L-----RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~---~~~~~D~Ivse~~~~~~------~-----~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. ..++||+|++++...-. . ++ ..+..++..+.++|+|||.++....
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 13579999998742100 0 00 1245778888899999999886543
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.7e-10 Score=112.90 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-~~~~D~I 148 (391)
+...++.+|||+|||+|..++.+++.+. .+|+|+|++ .++..++++++.+|+. ++++++|+.++. . +++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 3456788999999999999999988743 489999999 9999999999999885 789999998753 1 3679999
Q ss_pred EEcccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++...... ... ....++..+.++|+|||.++.+.+++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9877432210 111 124678888999999999997766544
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.5e-10 Score=113.73 Aligned_cols=114 Identities=19% Similarity=0.135 Sum_probs=88.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++. ++++||+|
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEE
Confidence 33456789999999999999998886 34589999999 89999999999999976 999999998763 33789999
Q ss_pred EEcccccccc------------Ccch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL------------RESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~------------~e~~-------l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++..+... .+.. ...++..+.++|+|||.++.+.+++.
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9986422111 0011 24578888999999999986555443
No 117
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.8e-10 Score=112.57 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=89.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+.+ ++++++|..++. ..++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 34567789999999999999988876 24589999999 99999999999999865 999999998765 24789999
Q ss_pred EEccccccccCc-------------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLLRE-------------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++..+..... .....++..+.++|+|||.++.+.+++.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 997654322210 0125668888999999999998777643
No 118
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.16 E-value=4.1e-10 Score=102.28 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+++|++ .|++.|+++....+..+++++..+|+... .+.||+|++..+.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhh
Confidence 4568999999999999999999887 69999999 99999999998888766799999995432 37899999843222
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
... ...+..+++.+.+.+++++++.
T Consensus 139 ~~~-~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYP-QEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence 222 2346677888877765555443
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=3.3e-10 Score=112.46 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=89.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----C-CCcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----L-PEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~-~~~~ 145 (391)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++. . .++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 34457789999999999999988876 2 3489999999 99999999999999976 999999998864 2 3689
Q ss_pred cEEEEccccccccC----c--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 146 DVIISEWMGYFLLR----E--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 146 D~Ivse~~~~~~~~----e--------~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
|.|++++..+.... . . ....++..+.++|||||+++.+.++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99999764332110 0 0 135778889999999999987666544
No 120
>PRK00811 spermidine synthase; Provisional
Probab=99.15 E-value=3.2e-10 Score=106.08 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C--CCcEEEEEcccccCC--CCCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L--QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~--~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ . ..+++++.+|...+. ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998887 67799999999 99999999876532 2 457999999988753 237899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
++.......... ....+++.+++.|+|||+++.....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 976433322111 1256788899999999999865443
No 121
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=3.3e-10 Score=103.15 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
...+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| .|++.|+++...++ +++...+...+.
T Consensus 49 ~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~ 124 (232)
T PRK06202 49 RRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELV 124 (232)
T ss_pred HHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccccc
Confidence 333333333345679999999999998887753 32 379999999 99999988765443 556666555554
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+ ++||+|+|..+.+.+..+ .+..+++++.++++ +++++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccCCCccEEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence 43 799999996544444332 35678999999887 44433
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=5.5e-10 Score=105.73 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~ 144 (391)
.+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ .+++.|+++++.+++.+ +.++++|..+.... .+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCC
Confidence 344444455778999999999999999988632 369999999 99999999999998854 89999998765433 67
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
||+|++.. . ...+...+.+.|+|||.++.
T Consensus 150 fD~Ii~~~---g------~~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 150 YDVIFVTV---G------VDEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ccEEEECC---c------hHHhHHHHHHhcCCCCEEEE
Confidence 99999742 1 11223345678999998764
No 123
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.15 E-value=4.4e-10 Score=107.93 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=83.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivs 150 (391)
...+..+||||||+|.++..+|+.. ...++|+|++ +++..|.+++..+++.+ +.++++|+..+ .++ +.+|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEE
Confidence 3456789999999999999998873 4479999999 99999999999999977 99999999764 233 78999997
Q ss_pred ccccccccCc-c--hHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRE-S--MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e-~--~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.......-.. . ..+.++..+.|+|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4322111000 0 1367899999999999988754
No 124
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.15 E-value=3.1e-10 Score=100.98 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
++.+|||||||+|.++..+++. +..+++|||+| .|++.|+++.. .++++++|+.+ +++ ++||+|++..+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECChh
Confidence 5578999999999999988886 44589999999 89999987542 27888999887 444 799999996554
Q ss_pred ccccCcchHHHHHHHHhcccc
Q 016351 155 YFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~ 175 (391)
+++. ...+..+++++.++++
T Consensus 116 ~hl~-p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 116 IHIN-PDNLPTAYRELYRCSN 135 (204)
T ss_pred hhCC-HHHHHHHHHHHHhhcC
Confidence 4443 2356778888888873
No 125
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=4.2e-10 Score=100.61 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C-CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~-~~~~ 145 (391)
.++.+|||||||+|.++..+++.. . .+|+|||+++|. .+.+ ++++++|+.+.. + .+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCCCC
Confidence 467899999999999999888873 2 489999999732 2233 899999998853 3 3789
Q ss_pred cEEEEccccccccCcc--------hHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRES--------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~--------~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|+...+...... .+..++..+.++|+|||.++..
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999976433322110 1246788999999999998863
No 126
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.13 E-value=5.5e-10 Score=106.33 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~ 143 (391)
.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|.+ .+++.|+++++.+++. +++++++|+.++.. .+
T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~ 239 (315)
T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQGE 239 (315)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcCC
Confidence 33333333334568999999999999999999875 89999999 9999999999999994 59999999987642 25
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+||+|++++.-.. ....++..+.+ ++|+++++.+..
T Consensus 240 ~~D~Vv~dPPr~G-----~~~~~~~~l~~-~~~~~ivyvsc~ 275 (315)
T PRK03522 240 VPDLVLVNPPRRG-----IGKELCDYLSQ-MAPRFILYSSCN 275 (315)
T ss_pred CCeEEEECCCCCC-----ccHHHHHHHHH-cCCCeEEEEECC
Confidence 7999999875322 22233333333 577776665433
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=5.4e-10 Score=96.61 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=77.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.+++++.. .++++++++|+.++.++ ..+|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 4444445567899999999999999999985 489999999 899999888754 23599999999998766 46999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|++++. +... ...+..++.. ..+.++|.++..
T Consensus 81 vi~n~P-y~~~-~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLP-YNIS-TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEECCC-cccH-HHHHHHHHhc--CCCcceEEEEEE
Confidence 999864 3221 2233333332 224577777655
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.12 E-value=5.7e-10 Score=105.47 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=80.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~ 142 (391)
.+.|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++....-.-+|.++++|+.+ +.++
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 245789999999999999988874 2479999999 9999998887654322248889999987 3444
Q ss_pred Ccc---cE--EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKV---DV--IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~---D~--Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..+ +. +++....+.+. ......+++.+++.|+|||.+++...
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 333 33 33322222222 33467889999999999999986543
No 129
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.12 E-value=6e-10 Score=110.42 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=88.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+...+.++.+|...... .++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 34457789999999999999998886 44589999999 9999999999999987445557777765442 3689999
Q ss_pred EEcccccccc--C--cc---------------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 149 ISEWMGYFLL--R--ES---------------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 149 vse~~~~~~~--~--e~---------------~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++++..+... . .. ....++..+.++|||||.++.+.+++..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 9876433211 1 00 1356888899999999999987776553
No 130
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.12 E-value=2e-11 Score=106.20 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=90.9
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhH---HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRM---DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMS 113 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~---~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~ 113 (391)
-..+..|+.|+...++. |-|+..| ....+.|.. ....+-+++||||||||+.+..+-.. +.+++|+|+| .|+
T Consensus 85 aYVe~LFD~~Ae~Fd~~--LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl 160 (287)
T COG4976 85 AYVETLFDQYAERFDHI--LVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML 160 (287)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHH
Confidence 34567889999888774 4333332 233333433 33333589999999999998877665 4489999999 999
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~---~~~~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.|.++--.. ++.+.+...+ ..+++||+|++ +.+.|. +.+..++..+..+|+|||.+.++.-
T Consensus 161 ~kA~eKg~YD------~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 161 AKAHEKGLYD------TLYVAEAVLFLEDLTQERFDLIVAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHhccchH------HHHHHHHHHHhhhccCCcccchhhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEec
Confidence 8887643221 2333443322 22489999998 554444 4677888899999999999987643
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.12 E-value=3.4e-10 Score=100.67 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||||||+|.++..+++. |.. +|++||.. .+++.|+++++..++.+ |+++++|...-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccccC
Confidence 344556666778999999999999999999987 432 69999999 89999999999998875 99999998764323
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+||.|++... . +..... +.+.|++||+++.
T Consensus 140 apfD~I~v~~a---~--~~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTAA---V--PEIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESSB---B--SS--HH----HHHTEEEEEEEEE
T ss_pred CCcCEEEEeec---c--chHHHH----HHHhcCCCcEEEE
Confidence 78999998431 1 112233 4456899999874
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.11 E-value=6e-10 Score=103.91 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=69.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC----CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA----RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~----~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
+..+|||+|||+|.++..+++... .+|+|+|+| .|++.|+++. ..+.++.+|+.+++++ ++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 457899999999999988876521 269999999 8998887642 2388999999988776 789999983
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. +..+.++.|+|+|||.++.
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEEE
Confidence 21 1235678899999999985
No 133
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.10 E-value=3.7e-10 Score=98.48 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=78.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++.+|||+-||||.+++.++..|+++|+.||.+ ..+...+++++..++.++++++..|....- ..++||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 899999999999999888999999965531 2479999999
Q ss_pred ccccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
++.-..... ...++..+. .+|+++|.++....
T Consensus 121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 984322211 244555554 89999999986643
No 134
>PLN02476 O-methyltransferase
Probab=99.09 E-value=6.2e-10 Score=102.60 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-----~~~~D 146 (391)
.+.++|||||+++|..++.+|+. + ..+|+++|.+ ..++.|++++++.|+.++|+++.+|..+.- + .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999985 2 3479999999 899999999999999999999999987741 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- ......+++.+.++|+|||+++....-+.
T Consensus 197 ~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 197 FAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 9998652 23456778888899999999887655433
No 135
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.09 E-value=1.6e-09 Score=93.16 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=86.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCC--cccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPE--KVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~--~~D~Ivse 151 (391)
..+.++||+-+|||.+++.++..|+.+|+.||.+ ......+++++..++..+++++..|.... .... +||+|+.|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 6889999999999999999999999999999999 89999999999999888899999998854 2233 49999999
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+.......+.....+.-.-..+|+|+|.++......
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 853321111111222222468899999998775543
No 136
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=9.5e-10 Score=98.38 Aligned_cols=123 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhcCC---CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 62 RMDAYFNSIFQNKH---HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~~~---~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
.++.|.+++.+.+. ..++..+||+|||+|.+++.++.. +...|+|||.| .++..|.+|++++++.+++.+++-++
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 45666666554432 234567999999999999888765 66689999999 89999999999999999999997766
Q ss_pred ccC---C--C-CCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 137 EDI---V--L-PEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~---~--~-~~~~D~Ivse~~~~~~~~------------e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.- + + .+++|+++|++. |.... | ..+..++.-+.|.|+|||.+.+...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 542 1 1 289999999873 32111 1 1234455667899999998876533
No 137
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.09 E-value=4.5e-10 Score=99.60 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~-~~~~D 146 (391)
.+.++||+|||++|.-++.+|++ + ..+|+.+|.+ ..++.|+++++..|+.++|+++.+|..+.- . .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35689999999999999999986 2 2489999999 899999999999999999999999987741 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+|+.+.- ......++..+.++|+|||+++....-+..
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 9998652 223456777788999999999877665443
No 138
>PTZ00146 fibrillarin; Provisional
Probab=99.09 E-value=1e-09 Score=101.27 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=79.4
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
...+..+|..- +...++.+|||||||+|.++..+++. + ..+|+|||++ .|.+.+.+.++.. .+|.++.+|+
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34455566433 33457789999999999999999987 3 3489999999 7665554444332 2388999998
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+... +.+.+|+|+++.. . ......++.++.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva--~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA--Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC--C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 6531 2268999999763 1 123445666788999999999873
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=108.18 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
++.+.+.+...+...++.+|||+|||+|.+++.+++.+. +|+|+|+| .|++.|+++++.+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 445555555555555678999999999999999998864 89999999 99999999999999865 999999987632
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ .++||+|++++.-.. +..+++.+.+ ++|+++++.+.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 257999999874322 1234455544 58888777553
No 140
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.08 E-value=1e-09 Score=85.40 Aligned_cols=100 Identities=33% Similarity=0.387 Sum_probs=78.5
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccccccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~ 157 (391)
+|||+|||+|.++..+++....+++++|.+ .++..+++.....+ ..+++++.+|+.+... ++++|+|++..+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888556689999999 78888876444433 3459999999988763 4789999986643332
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......++..+.+.|+++|.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345778889999999999999865
No 141
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.06 E-value=9.8e-10 Score=97.44 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=88.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV---LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-~d~~~~~---~~~~~D~Iv 149 (391)
...++||+||++.|.-++.+|.. . ..+++.||.+ ++++.|++++++.|+.++|+++. +|..+.- ..++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999999987 3 4589999999 99999999999999999999999 5876642 248999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+. .....+.+++.+.++|+|||+++....-+..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 754 1224567899999999999999877664443
No 142
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=1e-09 Score=100.28 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
...+|||+|||+|.+++.+++. +..+|+++|++ .|++.++++.. +++++++|+.++...++||+|++++.-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFESNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcccCCCcEEEEcCCcc
Confidence 3468999999999999888775 34589999999 89999887531 3899999999876567899999987433
Q ss_pred cccCcc---------------h--HHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRES---------------M--FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~---------------~--l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+. . +..++.....+|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 322110 0 345566667788888866544
No 143
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.03 E-value=2.4e-09 Score=104.16 Aligned_cols=100 Identities=10% Similarity=0.078 Sum_probs=78.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.+++.++..+. +|+|||++ .+++.|+++++.+++. +++++.+|+.++.. .++||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 4567999999999999999998774 89999999 9999999999999986 59999999977532 256999999986
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
-. . ....+++.+.+ ++|+++++.+.
T Consensus 310 r~-G----~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 310 RR-G----IGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CC-C----CcHHHHHHHHh-cCCCeEEEEEe
Confidence 32 2 22344555543 68888777553
No 144
>PLN02366 spermidine synthase
Probab=99.01 E-value=4.5e-09 Score=99.02 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCC--C-CCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIV--L-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~~--~-~~~~D~Iv 149 (391)
+.++||+||||.|.++..+++. +..+|+.||++ .+++.|++.+... ++ ..+++++.+|....- . .++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4689999999999999999988 35689999999 8999999987643 23 347999999986642 2 36899999
Q ss_pred EccccccccCc-chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e-~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++......... -.-..+++.+++.|+|||+++......+.
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 97644322111 11346788999999999999876554443
No 145
>PLN02672 methionine S-methyltransferase
Probab=99.01 E-value=2e-09 Score=115.21 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=95.3
Q ss_pred hHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC----------
Q 016351 60 RVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ---------- 126 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~---------- 126 (391)
...++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++|++.|+++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3445666665433211 1245789999999999999998874 4589999999 9999999999987643
Q ss_pred -----CcEEEEEcccccCCCC--CcccEEEEccccccccC---------------------------------c---chH
Q 016351 127 -----DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLR---------------------------------E---SMF 163 (391)
Q Consensus 127 -----~~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~---------------------------------e---~~l 163 (391)
++|+++++|+.+.... .+||+|||++. |.... + ...
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred cccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 4699999998875322 36999999873 21110 0 113
Q ss_pred HHHHHHHhccccCCeEEEcccceeEEeecc
Q 016351 164 DSVICARDRWLKPTGVMYPSHARMWVAPIR 193 (391)
Q Consensus 164 ~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~ 193 (391)
..++....++|+|||.+++....-....+.
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 566777789999999999887765554443
No 146
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.00 E-value=1.7e-09 Score=93.79 Aligned_cols=103 Identities=30% Similarity=0.476 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEcccccC-----CCCCcccE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--LQDVVEVIEGSVEDI-----VLPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~-----~~~~~~D~ 147 (391)
..++++|||||||+|+.++.+++. +..+|+..|.++.++.++.+++.|+ ...++.+...|-.+- ..+.+||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 457799999999999999999999 7779999999988899999999988 566788888765431 11268999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
|++.-+ +..+...+.++..+.++|+++|.++
T Consensus 123 IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 123 ILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred EEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 997222 3335578889999999999998844
No 147
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.99 E-value=2e-09 Score=93.33 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-CcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~-~~~D~Ivse~~~ 154 (391)
+..-|||||||||+.+..+...|. ..+|+|+| .|++.|.+.--+ -.++.+|+-+ +++. +.||-+||-..-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 79999999 999999862211 3678888865 4444 899999883322
Q ss_pred ccccCc--------chHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRE--------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+++. ..+..++..++.+|++|+..++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 223221 23566788899999999998865
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.99 E-value=3.4e-09 Score=96.29 Aligned_cols=107 Identities=28% Similarity=0.298 Sum_probs=82.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--- 141 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--- 141 (391)
..|...+...++.+|||.|+|+|.++..++++ | ..+|+..|.. +.++.|+++++.+++.++|++.+.|+.+-.+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 45667777889999999999999999999987 3 4599999999 9999999999999999889999999965322
Q ss_pred -CCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEc
Q 016351 142 -PEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYP 182 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L-~~gG~ii~ 182 (391)
...+|.|+.|+.. +...+..+.+.| ++||++..
T Consensus 110 ~~~~~DavfLDlp~--------Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 110 LESDFDAVFLDLPD--------PWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp -TTSEEEEEEESSS--------GGGGHHHHHHHE-EEEEEEEE
T ss_pred ccCcccEEEEeCCC--------HHHHHHHHHHHHhcCCceEEE
Confidence 3679999987643 223466677889 89998763
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.98 E-value=5.9e-09 Score=103.69 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
.+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|++ .+++.|+++++.+++.+ ++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHH
Confidence 334444455554445568999999999999999998754 89999999 99999999999999864 999999987631
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ..+||+|+.++.-.. ....+++.+.+ ++|+++++.+
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 1 246999999875322 12345555543 7888877654
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.98 E-value=6.2e-09 Score=96.90 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
.+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ + ..+++++.+|..+.- .+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34699999999999998888875 6689999999 89999998875432 1 246889998886631 2478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.......... ....+++.+.+.|+|||+++....
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76432221111 135678889999999999987644
No 151
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.96 E-value=3.2e-09 Score=96.65 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=86.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C------CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~------~~~~ 145 (391)
.+.++||+||+++|.-++.+|+. + ..+|+.+|.+ +.++.|+++++..|+.++|+++.++..+.- + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35689999999999999999876 2 2489999999 899999999999999999999999987741 1 2589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
|+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 99998642 223456777788999999998876654443
No 152
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=3.7e-09 Score=93.01 Aligned_cols=97 Identities=26% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. +..+|+++|++++. .. ..++++++|+.+.. .+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 456789999999999999888776 34479999999432 12 23788998987642 23 67
Q ss_pred ccEEEEcccccc-----ccCc---chHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYF-----LLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~-----~~~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+++...+. ..+. .....++..+.++|+|||.++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999652211 1100 12367888899999999998864
No 153
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.95 E-value=6.8e-09 Score=98.72 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccCC-----CC
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~i~~d~~~~~-----~~ 142 (391)
++.+|||||||-|.-..-..+++.++++|+|++ ..++.|+++.+.. ...-...++.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999887777777888899999999 8899998888321 11123678888875431 12
Q ss_pred --CcccEEEEc-cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 --EKVDVIISE-WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+||+|-|- .++|....+.....++..+...|+|||+||-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 599999994 47888888888889999999999999999843
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=5.9e-09 Score=91.82 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=76.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
-+..|... ..++.+|||+.||.|.+++.+|+. .+++|+|+|++ ..++.++++++.|++.++|.++++|.+++...+
T Consensus 91 Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~ 168 (200)
T PF02475_consen 91 ERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEG 168 (200)
T ss_dssp HHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT
T ss_pred HHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCcc
Confidence 33445544 356799999999999999999984 45589999999 899999999999999999999999999986568
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
.+|-|+++..... ..++.++..++++||++
T Consensus 169 ~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 169 KFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp -EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred ccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 9999998654322 23566777889999876
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=98.94 E-value=6.3e-09 Score=98.69 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH-----HHcCC-CCcEEEEEcccccCC--CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV-----KANNL-QDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~-----~~~~~-~~~v~~i~~d~~~~~--~~~~~D 146 (391)
...++||+||||+|..+..+++.. ..+|++||++ .+++.|++.. ....+ ..+++++.+|..++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345799999999999888888874 5689999999 8999999621 11222 357999999998852 237899
Q ss_pred EEEEcccccccc--CcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|++++...... ..-.-..++..+++.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999986432211 11112567889999999999987653
No 156
>PRK03612 spermidine synthase; Provisional
Probab=98.92 E-value=5.6e-09 Score=105.81 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHH--HH---cCCC-CcEEEEEcccccCC--CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLV--KA---NNLQ-DVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~--~~---~~~~-~~v~~i~~d~~~~~--~~~~~D 146 (391)
.++++|||||||+|..+..+++.+. .+|++||++ ++++.++++. .. ..++ .+++++.+|.++.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3468999999999999999988854 699999999 9999999842 21 1232 46999999998742 347999
Q ss_pred EEEEccccccccC--cchHHHHHHHHhccccCCeEEEcccce
Q 016351 147 VIISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivse~~~~~~~~--e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+|+++........ .-.-..+++.+++.|+|||+++.+...
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999864322111 111245788899999999999876543
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=6.5e-09 Score=91.50 Aligned_cols=106 Identities=20% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-----CC----------------------
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-----LQ---------------------- 126 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-----~~---------------------- 126 (391)
...++.+|||||.+|.+++.+|+. |+..|.|+|++ ..++.|+++++..- ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 456789999999999999999997 88899999999 88999999876321 00
Q ss_pred --------------CcEEEEEcccccCCCCCcccEEEE----ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 127 --------------DVVEVIEGSVEDIVLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 --------------~~v~~i~~d~~~~~~~~~~D~Ivs----e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+..+-..|+.+.. ..+||+|+| -|++-....+ -+..++..+.++|.|||++|..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEc
Confidence 01111112222111 268999998 3332222333 4778999999999999999854
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=95.54 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.|.......++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++...+..++++++++|+.+..+ ..+|+
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~ 104 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDV 104 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCE
Confidence 344445556778999999999999999998865 79999999 9999999999887755679999999988765 47899
Q ss_pred EEEccc
Q 016351 148 IISEWM 153 (391)
Q Consensus 148 Ivse~~ 153 (391)
|++++.
T Consensus 105 VvaNlP 110 (294)
T PTZ00338 105 CVANVP 110 (294)
T ss_pred EEecCC
Confidence 999864
No 159
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=1.9e-09 Score=94.98 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=71.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEE-cccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIIS-EWMGYF 156 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivs-e~~~~~ 156 (391)
+.++|+|||+|.-+..+|.. +++|+|+|+| .|++.|++.....-.....++...++.++.- ++++|+|+| +.++.+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 48999999999777778877 6689999999 9999988765443332234555555555543 389999998 333322
Q ss_pred ccCcchHHHHHHHHhccccCCe-EEEc
Q 016351 157 LLRESMFDSVICARDRWLKPTG-VMYP 182 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG-~ii~ 182 (391)
+++.++..++|+|+++| ++.+
T Consensus 114 -----dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -----DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -----chHHHHHHHHHHcCCCCCEEEE
Confidence 57889999999999987 5543
No 160
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=1.4e-08 Score=89.77 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CC-CcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV-LP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~-~~-~~~D~Ivse~~ 153 (391)
++.+|||||||+|.++..+++.....++|+|++ +++..+++ . .++++++|+.+ +. ++ ++||+|+|...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 567999999999999988887644478999999 88877753 1 27888888876 32 33 68999999543
Q ss_pred cccccCcchHHHHHHHHhccccCC
Q 016351 154 GYFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~g 177 (391)
.+. -.+...+++++.+.++++
T Consensus 85 l~~---~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 85 LQA---TRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hHc---CcCHHHHHHHHHHhCCeE
Confidence 222 234667788777766653
No 161
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.84 E-value=8.1e-09 Score=97.77 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=136.7
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc--ccccCcc-hHHHHHHHHhccccCCe
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG--YFLLRES-MFDSVICARDRWLKPTG 178 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~--~~~~~e~-~l~~~l~~~~~~L~~gG 178 (391)
+++.++.+ ..-....++.-...+.+ ++.+..=+ ..+.+.|+++.+++. ....+.. .+-.....+...+.++.
T Consensus 391 ~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~ 466 (636)
T KOG1501|consen 391 KRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDEL 466 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCce
Confidence 45555666 33333344444444433 33333222 223456877777642 1222221 12233455677889999
Q ss_pred EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhh---hhhhcccCceeecCCCCc
Q 016351 179 VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQ---KKYYLQTSLWSNLHPDQV 255 (391)
Q Consensus 179 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 255 (391)
.+.|..+.+.+.|.. +....++..+...+.|||+++|.++..... +.....+++|+ ++...
T Consensus 467 ~V~P~~~~L~Ai~~k--------------F~DL~~I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWE--Y~~~~ 530 (636)
T KOG1501|consen 467 RVEPHMGVLKAIPEK--------------FEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWE--YAGIV 530 (636)
T ss_pred eeccccchhhhhhHH--------------HHHHHhhcccccccccceeeehhHHHHhhchhhhhhhccchhhh--ccCee
Confidence 999999998887663 223345666778999999999966543220 01111246666 56788
Q ss_pred cccceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCC-------CCCCC
Q 016351 256 IGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS-------TYNGT 328 (391)
Q Consensus 256 ls~p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~-------~~~~~ 328 (391)
+++|.++++|++......+ +..+.+. +.+.-||+.+|++++|.+ +.|||+-. ..+..
T Consensus 531 ~~d~~eIL~F~~~~~V~~Q------k~~V~i~-~~~sS~A~~mWME~~~~~---------~nLSTGLL~~~~~G~~~WN~ 594 (636)
T KOG1501|consen 531 KGDAVEILRFPIDGRVSSQ------KCVVNID-NMSSSNAIPMWMEWEFGG---------INLSTGLLSISSAGVPEWNK 594 (636)
T ss_pred cCCceeEEEeccCCccccc------eeEEEcc-CCCccccceeeEEeeeCc---------eeecccceeecCCCCcccCc
Confidence 9999999999998654432 3556667 999999999999999964 56665431 14567
Q ss_pred CccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016351 329 HWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 329 hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
|.||+||++..-+ .-.-++.+.+.|.++..
T Consensus 595 ~~KQ~VYF~~t~L--~~~ksl~~~~~F~~~TG 624 (636)
T KOG1501|consen 595 GYKQGVYFPITAL--RNDKSLCLHALFDKSTG 624 (636)
T ss_pred cccceeEEEhHHh--CCCceEEEEEEEcCCCC
Confidence 9999999874433 33346777777766554
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=2e-08 Score=92.87 Aligned_cols=82 Identities=29% Similarity=0.454 Sum_probs=67.0
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+.|.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.+++++.. . ++++++++|+.++.++ .+
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-~~ 92 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-EF 92 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch-hc
Confidence 34455555556778999999999999999999865 89999999 999999987754 2 3599999999987764 58
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
|.|++++.
T Consensus 93 d~Vv~NlP 100 (258)
T PRK14896 93 NKVVSNLP 100 (258)
T ss_pred eEEEEcCC
Confidence 99999875
No 163
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.83 E-value=1.7e-08 Score=98.00 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
+.+|||++||+|.+++.+++. ++.+|+++|++ .+++.++++++.|++.+ ++++++|+..+.. .++||+|+.++.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 468999999999999998875 66689999999 89999999999999875 7899999877533 4679999998742
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+++...+.++++|++..+
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234666655668999998877
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=3.9e-08 Score=85.67 Aligned_cols=120 Identities=25% Similarity=0.314 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-Ce---------EEEEech-HHHHHHHHHHHHcCCCCcEEEE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RK---------VYAVEAT-KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~---------V~avD~s-~~~~~a~~~~~~~~~~~~v~~i 132 (391)
+....++.......++..|||--||+|.+.+.++..+. .. ++|+|++ .++..|+++++..++.+.|.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 45556666666666788999999999999988877632 13 7899999 9999999999999999899999
Q ss_pred EcccccCCC-CCcccEEEEccc-cccccC----cchHHHHHHHHhccccCCeEEEcc
Q 016351 133 EGSVEDIVL-PEKVDVIISEWM-GYFLLR----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 133 ~~d~~~~~~-~~~~D~Ivse~~-~~~~~~----e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.|+.++++ .+.+|+||+++. +.-+.. +.....+++.+.+.|++..+++..
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999984 489999999874 221221 123456678888999995555433
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.7e-08 Score=93.28 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~ 142 (391)
.+.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|+.-|+.|.+..++.+ ..++.. |++.++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4455565555667888999999999999999999999 79999999 99999999999998876 555555 99999988
Q ss_pred C-cccEEEEcccccccc----C---cchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 E-KVDVIISEWMGYFLL----R---ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~-~~D~Ivse~~~~~~~----~---e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+ .+|.|++|+. |.-. . +.....+++.+.+.|++||++++...
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 4999999874 2211 1 23467788889999999998875544
No 166
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=2.8e-08 Score=89.07 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH-------HHc----CCCCcEE
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV-------KAN----NLQDVVE 130 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~-------~~~----~~~~~v~ 130 (391)
+..+.+.+.... ..++.+||+.|||.|.-+..+|+.|. +|+|+|+| ..++.+.+.. +.+ .-...|+
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 334444444332 23568999999999999999999999 69999999 6676664411 000 0013599
Q ss_pred EEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 131 VIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 131 ~i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++++|+.++... ++||+|+-......+ ...+...+.+.+.++|+|||.++.-
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999998631 589998864433333 3456788899999999999987643
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=9.5e-09 Score=92.16 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-c------C----CCCcEEE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-N------N----LQDVVEV 131 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~------~----~~~~v~~ 131 (391)
..+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . + -.++|++
T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 344444444 3345667999999999999999999998 79999999 667666332111 0 0 0235899
Q ss_pred EEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 132 IEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 132 i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+++|+.++... ++||+|+-......+ ...+...+.+.+.++|+|||.++
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred EEcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 99999998654 589999975443333 34567889999999999999954
No 168
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.81 E-value=1.6e-08 Score=87.10 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=62.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~ 152 (391)
.++.+|||||||.|.+...+.+....+.+|||++ +.+..+.+ +| +.++++|+.+- .++ ++||.||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIl-- 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVIL-- 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEeh--
Confidence 4679999999999999988888644479999999 65544432 33 78999999873 244 89999995
Q ss_pred ccccccCcchHHHHHHHHhcccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~ 175 (391)
...+-.-..+..+++++.|.-+
T Consensus 82 -sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 -SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred -HhHHHhHhHHHHHHHHHHHhcC
Confidence 2333333346677777765533
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.78 E-value=2.7e-08 Score=92.68 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-c
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-V 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~-~ 145 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. ++++++++|+.+++++.- .
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 3344444556778999999999999999999976 89999999 999999886642 359999999999876532 5
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
|.|++++.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 88998864
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.78 E-value=2.1e-08 Score=91.79 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEcccccC------CCCC-
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSVEDI------VLPE- 143 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~i~~d~~~~------~~~~- 143 (391)
.++..+||+|||-|.-.+..-++|..+++++|+. ..++.|+++.+...-.. .+.|+.+|.... +.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 4567899999999998888889999999999999 77888877665422111 378999987553 2233
Q ss_pred cccEEEEc-cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISE-WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|-|. .++|.+..+.....++..+.+.|+|||+||=.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 49999985 46777777777888999999999999999844
No 171
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.75 E-value=1.6e-07 Score=81.81 Aligned_cols=98 Identities=30% Similarity=0.393 Sum_probs=80.5
Q ss_pred EEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016351 81 TVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~ 158 (391)
+++|||+|.|.-++.+|-. ...+|+.+|.+ .-+...+..+...+++| ++++++++++.....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhc----
Confidence 7999999999988887766 34489999999 88999999999999986 99999999994445899999998764
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.+..++.-+.++|++||.++...+.
T Consensus 126 ---~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 126 ---PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp ---SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3567888889999999999866554
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.74 E-value=3.7e-08 Score=88.68 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
.++.......++++|||+|||||.++..+++.|+++|+|+|.+ .|+..
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3444433345788999999999999999999999899999999 67654
No 173
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.73 E-value=9.7e-08 Score=92.18 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=71.8
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C-----
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P----- 142 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~----- 142 (391)
.+|||++||+|.+++.+++.. ++|+|||++ ++++.|+++++.|++.+ ++++.+|+.++.. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 469999999999999888774 589999999 99999999999999975 9999999877421 0
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++|+|+.|+.-.. ..+.+++.+.+ |+++++.+
T Consensus 277 ~~~~d~v~lDPPR~G-----~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG-----LDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cCCCCEEEECCCCCC-----CcHHHHHHHHc---CCcEEEEE
Confidence 13799999886322 23345555433 66666544
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.72 E-value=7.9e-08 Score=90.76 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEE-cccccCC-----CCCcccEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIE-GSVEDIV-----LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~-~d~~~~~-----~~~~~D~I 148 (391)
++.+|||||||+|.+..+++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999876655554 333489999999 8999999999999 8998899875 3333321 13689999
Q ss_pred EEccc
Q 016351 149 ISEWM 153 (391)
Q Consensus 149 vse~~ 153 (391)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
No 175
>PLN02823 spermine synthase
Probab=98.71 E-value=1.3e-07 Score=90.17 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||.||+|.|.++..+++. +..+|++||++ .+++.|++.+..++ + ..+++++.+|.+..- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988886 56789999999 89999999876432 2 357999999998852 2378999999
Q ss_pred cccccc---ccCcchHHHHHH-HHhccccCCeEEEcc
Q 016351 151 EWMGYF---LLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~---~~~e~~l~~~l~-~~~~~L~~gG~ii~~ 183 (391)
+..... ....-.-..+++ .+.+.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 854321 011111235666 788999999998764
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.70 E-value=1.5e-07 Score=91.13 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
.+.+.+.+...+.. .+.+|||++||+|.+++.+++. +++|+|||.+ .+++.|+++++.|++. +++++.+|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444443322 2357999999999999988876 4589999999 9999999999999986 4999999987741
Q ss_pred -C---------------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -L---------------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~---------------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ..+||+|+.|+.- .. ..+.++..+.+ ++++++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G----~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AG----LDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-CC----CcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999999863 22 22344554433 56655543
No 177
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.70 E-value=1.5e-07 Score=87.33 Aligned_cols=111 Identities=22% Similarity=0.209 Sum_probs=87.8
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
++||-||.|.|..+..+++.. ..+++.||++ .+++.+++.+.... . ..+++++.+|..++- .+++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 799999999999999999985 5689999999 89999999876543 2 368999999988863 336899999977
Q ss_pred ccccccCcch-HHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 153 MGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
.......+.. -..+++.+++.|+++|+++......+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5553222221 2578899999999999999876665554
No 178
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.69 E-value=1.9e-07 Score=85.42 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+.......+.++|||||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -++|. +|++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D~~ 162 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-ADVY 162 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ESEE
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-ccce
Confidence 344444445579999999999999998887 3348999999877777776 567999999998 46667 9999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCC--eEEEcccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPT--GVMYPSHA 185 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~g--G~ii~~~~ 185 (391)
+...+.+.+..+ ....+|+++++.|+|| |++++...
T Consensus 163 ~l~~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 976555555544 4667899999999998 99886543
No 179
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=1.4e-07 Score=83.22 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=75.4
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEEEEccc
Q 016351 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D~Ivse~~ 153 (391)
..+||||||.|.+.+.+|+. .-..++|||+. ..+..|.+++...+++| +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 48999999999999888876 44589999999 88899988898889977 99999998873 23478998886433
Q ss_pred cccccCcc-----hHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRES-----MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~-----~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+...-... .-+.++..+.+.|+|||.+.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 33221111 2367889999999999988643
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.1e-08 Score=79.68 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.|.......++++++|||||+|.|+..++-.++..|.|+|+. ..++.+.+++....++ ++++++|+.++.+. +.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEe
Confidence 344555567899999999999999988887788899999999 8999999999988876 79999999998766 8899
Q ss_pred EEEEcc
Q 016351 147 VIISEW 152 (391)
Q Consensus 147 ~Ivse~ 152 (391)
..+.++
T Consensus 117 taviNp 122 (185)
T KOG3420|consen 117 TAVINP 122 (185)
T ss_pred eEEecC
Confidence 999875
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.69 E-value=1.7e-08 Score=88.42 Aligned_cols=120 Identities=24% Similarity=0.253 Sum_probs=90.2
Q ss_pred HHHHHHHHHhc--CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEccccc
Q 016351 63 MDAYFNSIFQN--KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~--~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~ 138 (391)
.+-|..++.+. ....++.+|||...|-|..++.+++.||.+|+.+|.+ ..++.|.-|=-..++. ..|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 34445544432 2234689999999999999999999999999999999 7877765322111221 248999999988
Q ss_pred C--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 139 I--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 139 ~--~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+ .++ ++||+||.++.-..+..+-.-..+.+++.|+|+|||.++-
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 6 344 7899999998766666665567889999999999999883
No 182
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.69 E-value=3.8e-08 Score=86.46 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
..++||.|||.|..+..+.-.-+.+|..||.. ..++.|++..... .....++.+..+.++.++ .+||+|++.|+..+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 47899999999999986655457799999999 8999998765541 234478899999998765 79999999987666
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|..+ ++-.+|..++..|+|+|+|++-..
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence 6554 678899999999999998885433
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.67 E-value=2.6e-07 Score=75.46 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++ + ++++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH
Confidence 34456665555567899999999996 8999999888 79999999 766666543 2 78999999887655
Q ss_pred -CcccEEEE
Q 016351 143 -EKVDVIIS 150 (391)
Q Consensus 143 -~~~D~Ivs 150 (391)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.7e-07 Score=92.11 Aligned_cols=118 Identities=24% Similarity=0.278 Sum_probs=90.8
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
...++.+.+.....+...++.+|||+-||.|.+++.+|+... +|+|+|++ ++++.|+++++.|++.| ++|+.++.++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 344555555555566556778999999999999999997654 89999999 99999999999999998 9999999998
Q ss_pred CCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+... ..+|+|+.|+.-..+. +.+++.+.+ ++|..+++.+..
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGAD-----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCC-----HHHHHHHHh-cCCCcEEEEeCC
Confidence 7533 4789999988655432 345555544 577776665533
No 185
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=88.88 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.+|.+|||+-||-|.+++.+|+.|..+|+|+|+| ..+..++++++.|++.++|+.+++|.+++... +.+|-|+...+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 4589999999999999999999998779999999 89999999999999999999999999998766 88999996433
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. -..++..+.+.++++|++..
T Consensus 266 --~~----a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 --KS----AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred --Cc----chhhHHHHHHHhhcCcEEEE
Confidence 22 23456666778888998763
No 186
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=6.2e-08 Score=85.53 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=77.9
Q ss_pred EEEEECCcccHHHHHHHHcCCC---eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEEc
Q 016351 81 TVLDVGTGSGILAIWSAQAGAR---KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIISE 151 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~---~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Ivse 151 (391)
+||+||||.|.....+.+.... +|+++|.| .+++..+++...+. +++.-...|+..-. .++.+|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 7999999999988888876332 79999999 88888887776654 33554445554422 12789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+...+..+. ....++.+.++|||||.+++..+..+-
T Consensus 152 FvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccch
Confidence 5444455543 567799999999999999988776554
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=1.7e-07 Score=84.06 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.|.......+...||++|.|||.++..+.++|+ +|+|+|++ .|+....++++-...+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3445566666677889999999999999999999987 79999999 99999999988777778999999999988765
Q ss_pred cccEEEEcc
Q 016351 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivse~ 152 (391)
.||.+|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999975
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.8e-07 Score=76.50 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=78.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..+.+||||||+|..+-++++. +.....++|+| .+++..++.++.|+.. +++++.|+..--.++++|+++-++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNPP- 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNPP- 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECCC-
Confidence 3678999999999999888886 34578899999 8888889999988875 8899999877544589999998662
Q ss_pred cccc-----------------Cc--chHHHHHHHHhccccCCeEEEc
Q 016351 155 YFLL-----------------RE--SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~~~-----------------~e--~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|... .. ...+.++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 2211 11 1256778888889999998763
No 189
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=80.56 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.|..+.....+++|||+|+|+|+.++.++++|++.|++.|+. -..+.++-|++.|+.. |.+...|... .+..+|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CCccee
Confidence 3455555667789999999999999999999999999999999 6777888899999976 8999888776 357899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+|+..- .......-..++. +.+.|+..|.
T Consensus 145 l~LagD---lfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 145 LLLAGD---LFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred EEEeec---eecCchHHHHHHH-HHHHHHhCCC
Confidence 999622 2222223344555 4444555543
No 190
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=2.8e-07 Score=89.10 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~ 153 (391)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|++.+ ++++++|+..+.. .++||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999987 77899999999 89999999999998864 8999999987632 267999998874
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ....+++.+.+.++++|++...
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1235777888889999988765
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.59 E-value=2.5e-07 Score=85.31 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=64.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d 93 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFP 93 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcC
Confidence 3444445556778999999999999999999876 69999999 899998877643 24599999999987764 566
Q ss_pred ---EEEEccc
Q 016351 147 ---VIISEWM 153 (391)
Q Consensus 147 ---~Ivse~~ 153 (391)
+|++++.
T Consensus 94 ~~~~vvsNlP 103 (253)
T TIGR00755 94 KQLKVVSNLP 103 (253)
T ss_pred CcceEEEcCC
Confidence 8888753
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=4.1e-07 Score=80.62 Aligned_cols=134 Identities=23% Similarity=0.246 Sum_probs=95.9
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC---CCC--CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH---HFQ--GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMS 113 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~---~~~--~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~ 113 (391)
..|++..................+.|.+.+...+. ..+ +++++|||+|.|.-++.+|-. ...+|+-+|.. .-+
T Consensus 25 ~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~ 104 (215)
T COG0357 25 EAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI 104 (215)
T ss_pred HHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH
Confidence 44554444333333333333334556665544332 222 589999999999988887733 33469999999 889
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccCCCCCc-ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~-~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
...+...+..+++| ++++++.++++....+ ||+|+|..+. .+..+..-+..++++||.++.
T Consensus 105 ~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 105 AFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchh
Confidence 99999999999987 9999999999865434 9999998764 356677888899999998763
No 193
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.56 E-value=1.5e-07 Score=79.81 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~-~~D~Ivse~ 152 (391)
.+|+|+.||.|..++.+|+.+. +|+|||++ ..++.|+.+++-.|..++|+++++|+.++... . .+|+|+.++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999965 89999999 89999999999999999999999999886322 1 289999865
No 194
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.55 E-value=9.6e-07 Score=84.11 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---------------------------------------- 102 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~---------------------------------------- 102 (391)
.+.+..+|.......++..++|--||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4666778887777777788999999999999988876531
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc-cccccCcchHH----HHHHHHhcccc
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM-GYFLLRESMFD----SVICARDRWLK 175 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~-~~~~~~e~~l~----~~l~~~~~~L~ 175 (391)
.++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+ +.+|+|||++. +--+..+..+. .+...+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 37799999 99999999999999999999999999999877 89999999874 22233333333 33344456666
Q ss_pred CCeEEEcccc
Q 016351 176 PTGVMYPSHA 185 (391)
Q Consensus 176 ~gG~ii~~~~ 185 (391)
.-+..|+...
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 6666665543
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.3e-07 Score=82.03 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=69.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC--
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-- 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-- 143 (391)
.+.|.......++..|||||+|.|.++..+++.+. +|+|||++ .++...++... ..++++++++|+...+++.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 45566666666789999999999999999999987 69999999 88888887765 2345999999999999886
Q ss_pred cccEEEEccc
Q 016351 144 KVDVIISEWM 153 (391)
Q Consensus 144 ~~D~Ivse~~ 153 (391)
.++.|++++.
T Consensus 95 ~~~~vVaNlP 104 (259)
T COG0030 95 QPYKVVANLP 104 (259)
T ss_pred CCCEEEEcCC
Confidence 7899999874
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.54 E-value=7.8e-07 Score=88.47 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=88.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||++||.|.-+..+|.. +...|+|+|++ .-+..+++++++.|+.+ |.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 3467899999999999998888875 23489999999 88999999999999976 889999988753 347899999
Q ss_pred Ecccccccc----Cc---------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL----RE---------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~----~e---------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.|...+... .. .....+|..+.++|||||+++-+.+++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 876533211 10 0125678888899999999998877644
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.54 E-value=2.5e-07 Score=81.43 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=75.7
Q ss_pred cCChHhHHHHHHHHHh-cCC---CCCCCEEEEECCccc----HHHHHHHHc---CC---CeEEEEech-HHHHHHHHHH-
Q 016351 57 LSDRVRMDAYFNSIFQ-NKH---HFQGKTVLDVGTGSG----ILAIWSAQA---GA---RKVYAVEAT-KMSDHARTLV- 120 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~-~~~---~~~~~~VLDlGcGtG----~l~~~~a~~---g~---~~V~avD~s-~~~~~a~~~~- 120 (391)
+.|....+.+.+.+.. .+. ..+..+|+..||+|| .+++.+... .. -+|+|+|+| .+++.|++-+
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3455556666666662 221 124478999999999 456666662 12 279999999 8898887521
Q ss_pred -------------HH-----c--C------CCCcEEEEEccccc-CCCCCcccEEEEccccccccCcchHHHHHHHHhcc
Q 016351 121 -------------KA-----N--N------LQDVVEVIEGSVED-IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 121 -------------~~-----~--~------~~~~v~~i~~d~~~-~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~ 173 (391)
++ . + +.+.|+|.+.|+.+ .+..++||+|+|..+...+. ......+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHH
Confidence 00 0 0 12569999999988 33348999999954433333 33567899999999
Q ss_pred ccCCeEEEcccc
Q 016351 174 LKPTGVMYPSHA 185 (391)
Q Consensus 174 L~~gG~ii~~~~ 185 (391)
|+|||.++....
T Consensus 165 L~pgG~L~lG~s 176 (196)
T PF01739_consen 165 LKPGGYLFLGHS 176 (196)
T ss_dssp EEEEEEEEE-TT
T ss_pred cCCCCEEEEecC
Confidence 999999986644
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=4.7e-07 Score=82.93 Aligned_cols=107 Identities=24% Similarity=0.209 Sum_probs=79.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCC---CCcEEEEEcccccCC--CCC-cccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNL---QDVVEVIEGSVEDIV--LPE-KVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~---~~~v~~i~~d~~~~~--~~~-~~D~Iv 149 (391)
+.++||-||.|.|..+..+.+.. ..+|+.||++ .+++.|++.+..... ..+++++.+|...+- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56899999999999999998874 5689999999 899999998765332 357999999998752 235 899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.......... .-..+++.+++.|+|+|+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 977543222111 13578899999999999988654
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=6.8e-07 Score=78.70 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~-~~~~D 146 (391)
...+++||||.-||.-++..|.+ --.+|+++|++ ...+.+.+..+..|..++|++++++..+. .. .+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 46789999999999988888776 22389999999 89999999999999999999999987663 11 37899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+++.+. . ......++..+.++|++||+++.....+..
T Consensus 152 faFvDa---d---K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVDA---D---KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEcc---c---hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 999743 1 112235677788999999999887765555
No 200
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.52 E-value=2.4e-07 Score=79.24 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=59.8
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016351 105 YAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
+|+|+| +|++.|+++.+..+ ..++|+++++|+.+++++ ++||+|++.. .+.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234599999999999876 6899999843 2333346778999999999999999
Q ss_pred Eccc
Q 016351 181 YPSH 184 (391)
Q Consensus 181 i~~~ 184 (391)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7553
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.48 E-value=2.3e-06 Score=78.10 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~~~~D~I 148 (391)
...-+||||.||.|...+-+... . ..+|...|.| ..++..++.++..|+.+.++|.++|+.+.. +.-+.+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999987766654 3 3589999999 789999999999999998899999987742 22457888
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+...+...+.....+...+..+.+.+.|||++|.....++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 7755444444434567778899999999999996654444
No 202
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.48 E-value=7.1e-07 Score=78.12 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=78.1
Q ss_pred EEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016351 81 TVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------~~~~D~Iv 149 (391)
+|||||||||..+..+|++-. -+..-.|.+ ......+..+...++++...-+..|+..-.. ++.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998733 345667887 5556777777788887765666667665421 25899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|-.|.++..++ ....++..+.++|++||.++...
T Consensus 108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeC
Confidence 96666766665 46788999999999999988543
No 203
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=7.7e-07 Score=78.87 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE-EcccccCCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI-EGSVEDIVL- 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i-~~d~~~~~~- 141 (391)
.+..++...--..+++++||||+-||.++..+.+.||++|+|||.. ..+.+--+. ..+|..+ ..+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 3345555544456889999999999999999999999999999998 654432211 1234443 346666543
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 --~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+..|+++|+. ++. .+..++..+..++++++.+++
T Consensus 140 ~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEEE
Confidence 36789999975 222 367788889999999997763
No 204
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.45 E-value=1.1e-06 Score=84.96 Aligned_cols=92 Identities=27% Similarity=0.319 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
++.+.+.+...+...++ .|||+-||+|.+++.+|+... +|+|||.+ .+++.|+++++.|++.+ ++|+.+++.++..
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhH
Confidence 34444545555554444 799999999999999998755 89999999 99999999999999976 9999987765421
Q ss_pred ----------------C-CcccEEEEccccccc
Q 016351 142 ----------------P-EKVDVIISEWMGYFL 157 (391)
Q Consensus 142 ----------------~-~~~D~Ivse~~~~~~ 157 (391)
. ..+|+|+.++.-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 268999998865544
No 205
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=3.6e-07 Score=79.95 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
...++||||+-|.+...+...+..+++-+|.| .|++.++. ++.+++. +....+|-+.+++. .++|+|++.. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~--~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIE--TSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceE--EEEEecchhcccccccchhhhhhhh---h
Confidence 46799999999999999998888899999999 99988765 3335544 67778888888876 7999999843 3
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.++++..+..++..|||+|.||-+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 445567788888899999999998843
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.42 E-value=7.4e-07 Score=82.96 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCEEEEECCccc----HHHHHHHHcC-----CCeEEEEech-HHHHHHHHHH------------------HH-----cC-
Q 016351 79 GKTVLDVGTGSG----ILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLV------------------KA-----NN- 124 (391)
Q Consensus 79 ~~~VLDlGcGtG----~l~~~~a~~g-----~~~V~avD~s-~~~~~a~~~~------------------~~-----~~- 124 (391)
..+|+..||.|| .+++.+.+.+ .-+|+|+|+| .+++.|++-+ .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4566666642 1279999999 8999887642 00 01
Q ss_pred ------CCCcEEEEEcccccCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 125 ------LQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 125 ------~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+.|+|.+.|+.+.+. .++||+|+|..+...+.. .....++..+.+.|+|||.++....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 33568899999887543 389999999544333332 3567899999999999999886543
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=2.1e-06 Score=90.34 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcC-----------------------------------------
Q 016351 63 MDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAG----------------------------------------- 100 (391)
Q Consensus 63 ~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~l~~~~a~~g----------------------------------------- 100 (391)
.+.+..+|...... .++..++|-+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 45666677766554 456899999999999988876521
Q ss_pred --CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEccc-cccccCcchHHHHHHHHhcc
Q 016351 101 --ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWM-GYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 101 --~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~ 173 (391)
..+++|+|++ .++..|++++..+|+.+.|++.++|+.++..+ +++|+|++++. +.-+..+..+..+...+.+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 1269999999 99999999999999998899999999988654 46999999874 22222223344444444333
Q ss_pred cc---CCeEE
Q 016351 174 LK---PTGVM 180 (391)
Q Consensus 174 L~---~gG~i 180 (391)
|+ +|+.+
T Consensus 334 lk~~~~g~~~ 343 (702)
T PRK11783 334 LKQQFGGWNA 343 (702)
T ss_pred HHHhCCCCeE
Confidence 33 66544
No 208
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.40 E-value=2.4e-06 Score=76.83 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=78.7
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEccc
Q 016351 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~~D~Ivse~~ 153 (391)
..+||||||.|.+...+|+. ....++|||+. ..+..|.+.+.+.++.| +.+++.|+..+. .+ ++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999998888877 44579999999 88999999999999964 999999998852 23 48888876332
Q ss_pred ccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+...- ++ -..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 22111 10 12467889999999999988754
No 209
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.39 E-value=8.4e-07 Score=79.91 Aligned_cols=97 Identities=27% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~ 155 (391)
...++||||+|.|..+..++.. .++|++.|.| .|.. +.++.|+ +++.. .++. .+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~----~vl~~--~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGF----TVLDI--DDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCC----eEEeh--hhhhccCCceEEEee---hh
Confidence 3468999999999999999886 4479999999 7743 3444453 44432 2232 2368999998 23
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.++.-..+..+++.+++.|+|+|++|....-.+
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~ 192 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF 192 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 344445678899999999999999886644333
No 210
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.38 E-value=2.5e-06 Score=71.27 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
...+.+...+....+.-||++|.|||.++..+.++|. ..+++||.| +......+... .++++++|..++.
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHH
Confidence 3345566666667788999999999999999999874 379999999 88776665543 2789999998875
Q ss_pred -C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ...||.|||-...-.+... .--.+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 1 2679999995422122221 2346788888889999988843
No 211
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.36 E-value=2.8e-06 Score=78.14 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=88.3
Q ss_pred hcCChHhHHHHHHHHHhcC-CCC--CCCEEEEECCccc----HHHHHHHHcCC------CeEEEEech-HHHHHHHHHHH
Q 016351 56 MLSDRVRMDAYFNSIFQNK-HHF--QGKTVLDVGTGSG----ILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~-~~~--~~~~VLDlGcGtG----~l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~ 121 (391)
++.+....+.+.+.+...+ ... ..-+|+.+||+|| .+++.+.+.+. -+|+|+|++ .+++.|+.-+=
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence 4556666666666665422 111 2578999999999 56677777642 379999999 89988865211
Q ss_pred H-----cC-----------------------CCCcEEEEEcccccCC-CCCcccEEEEccccccccCcchHHHHHHHHhc
Q 016351 122 A-----NN-----------------------LQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDR 172 (391)
Q Consensus 122 ~-----~~-----------------------~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~ 172 (391)
. .+ +.+.|.|-..|+.+-. .+++||+|+|..+...+.. .....++.....
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-~~q~~il~~f~~ 229 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-ETQERILRRFAD 229 (268)
T ss_pred ChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-HHHHHHHHHHHH
Confidence 1 11 1235777778877765 5688999999544333333 356788999999
Q ss_pred cccCCeEEEcccc
Q 016351 173 WLKPTGVMYPSHA 185 (391)
Q Consensus 173 ~L~~gG~ii~~~~ 185 (391)
.|+|||.++.-..
T Consensus 230 ~L~~gG~LflG~s 242 (268)
T COG1352 230 SLKPGGLLFLGHS 242 (268)
T ss_pred HhCCCCEEEEccC
Confidence 9999999886543
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.29 E-value=5.6e-06 Score=73.41 Aligned_cols=95 Identities=27% Similarity=0.356 Sum_probs=67.1
Q ss_pred EEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccccc
Q 016351 82 VLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLL 158 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~ 158 (391)
|.||||-.|.+++.+.+.|. .+|+|+|++ .-++.|+++++..++.++|+++.+|-.+.-.+ +..|+|+.-.||..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999974 479999999 88999999999999999999999997664334 44899987666544
Q ss_pred CcchHHHHHHHHhccccCCeEEE
Q 016351 159 RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
....++.+....++....+|
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEE
T ss_pred ---HHHHHHHhhHHHhccCCeEE
Confidence 24556666655555443444
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.1e-06 Score=73.38 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCC--eEEEEech-HHHHHHHHHHHHcC--------C-CCcEEEEEcccccCCCC
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GAR--KVYAVEAT-KMSDHARTLVKANN--------L-QDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~--~V~avD~s-~~~~~a~~~~~~~~--------~-~~~v~~i~~d~~~~~~~ 142 (391)
..++...||+|.|||.|+.++++. |+. .+.|||.- +.++.+++++...- + ..++.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 468899999999999999988865 432 34899988 89999999887653 1 13488999999997665
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+||.|.+-. . . ..+.+++...|++||.++
T Consensus 160 ~a~YDaIhvGA---a--a----~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---A--A----SELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---C--c----cccHHHHHHhhccCCeEE
Confidence 7999999732 1 1 122334445577777665
No 214
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.27 E-value=3.8e-06 Score=73.27 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=53.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc--ccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE--WMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse--~~~ 154 (391)
+..+|.|+|||.+.++..+. .+. +|...|+-+ .| -.++.+|+.+++++ +.+|++|+- +|+
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n-----~~Vtacdia~vPL~~~svDv~VfcLSLMG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN-----PRVTACDIANVPLEDESVDVAVFCLSLMG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS-----TTEEES-TTS-S--TT-EEEEEEES---S
T ss_pred CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC-----CCEEEecCccCcCCCCceeEEEEEhhhhC
Confidence 45799999999999985443 333 599999852 11 14677999999988 899998862 232
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
. .+..++.++.|.||+||.+.+....
T Consensus 135 T------n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 135 T------NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp S-------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C------CcHHHHHHHHheeccCcEEEEEEec
Confidence 2 4678899999999999998765443
No 215
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.25 E-value=1.3e-05 Score=73.70 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----cC----------------------------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----NN---------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----~~---------------------------- 124 (391)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.... +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347899999999999999999999 79999999 886554443331 00
Q ss_pred -------CCCcEEEEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 125 -------LQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 125 -------~~~~v~~i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-..+.....||+.++-.+ ++||+|++ .++++....+-.+++.+.++|||||+.|-.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEEec
Confidence 012355666777665433 58999997 466776666778899999999999977733
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.25 E-value=7.4e-06 Score=72.66 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=61.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHH-HcCCCeEEEEech-HHHHHHHHHH-------HHcCC-CCcEEEEEcccccC
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSA-QAGARKVYAVEAT-KMSDHARTLV-------KANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a-~~g~~~V~avD~s-~~~~~a~~~~-------~~~~~-~~~v~~i~~d~~~~ 139 (391)
|.+.+...++.+.+|||||.|...+.+| ..+.++++|||+. ...+.|+... +..|. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 3344555678899999999999877655 4588789999998 6655554422 23343 24589999998774
Q ss_pred CCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 140 VLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+.. ...|+|+++.. ...+ .+..-+......||+|.++|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~---~F~~-~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT---CFDP-DLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHGHC-SEEEE--T---TT-H-HHHHHHHHHHTTS-TT-EEE
T ss_pred HhHhhhhcCCCEEEEecc---ccCH-HHHHHHHHHHhcCCCCCEEE
Confidence 321 46899998543 2233 34444566667789998887
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.20 E-value=1.3e-05 Score=73.60 Aligned_cols=102 Identities=22% Similarity=0.032 Sum_probs=77.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CCC-CcEEEEEcccccCCCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NLQ-DVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~~-~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..++||-||.|.|..+..+.|+.. +|+-||++ .+++.+++..... +++ .+++++.. +.+. ..++||+||++..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcCC
Confidence 458999999999999999999964 89999999 8999999854432 232 46888762 2221 1378999999753
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
. -+.+.+.+++.|+|||+++....+.+..
T Consensus 149 ----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 149 ----P----DIHKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred ----C----ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence 1 1456788999999999999887766653
No 218
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2e-05 Score=70.98 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=82.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-- 142 (391)
..|...+...++.+||+-|+|+|.++.+++++ .-.|++..|.. .-++.|++.++..++.+++++.+.|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34666677789999999999999999999997 33589999999 78899999999999999999999999876544
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
..+|.|+.++.... + .++ .+.+.||.+|.
T Consensus 175 s~~aDaVFLDlPaPw---~-AiP----ha~~~lk~~g~ 204 (314)
T KOG2915|consen 175 SLKADAVFLDLPAPW---E-AIP----HAAKILKDEGG 204 (314)
T ss_pred ccccceEEEcCCChh---h-hhh----hhHHHhhhcCc
Confidence 68999998764322 2 222 33346777763
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.15 E-value=6.5e-06 Score=76.91 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=64.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCC
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPE 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~ 143 (391)
.+...+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .+++.|++.+.. .++++++++|+.++. +++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc
Confidence 34444445577899999999999999999884 3589999999 999999987754 356999999998863 122
Q ss_pred ---cccEEEEcc
Q 016351 144 ---KVDVIISEW 152 (391)
Q Consensus 144 ---~~D~Ivse~ 152 (391)
++|.|+.++
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 799999865
No 220
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.15 E-value=1.9e-06 Score=84.13 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCC--CCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech----HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 63 MDAYFNSIFQNKHH--FQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT----KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~--~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s----~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
...|.+.|.+.++. ..+ .++||+|||+|.++..+...+.. +..+-.+ ..++.| .+-|+.--+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfa----leRGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFA----LERGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhh----hhcCcchhhhh--h
Confidence 34666667666654 222 67999999999999999988652 3333222 233333 33444321211 1
Q ss_pred ccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 135 SVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 135 d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
-...++++ +.||+|.|.-...-+... -..++-++.|+|+|||+++.+....+
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPN--DGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccccchhc--ccceeehhhhhhccCceEEecCCccc
Confidence 23456777 899999983222111111 13467788999999999998877666
No 221
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=4.6e-06 Score=81.49 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=81.4
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
..-.+.+...|.+......++.+||+-||||.+++.+|+. +++|+|||++ +.+..|+++++.||+.| .+|+++-.++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3344556667777777777799999999999999999865 6689999999 89999999999999988 9999997666
Q ss_pred CCC----C--Cccc-EEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 139 IVL----P--EKVD-VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 ~~~----~--~~~D-~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+-. + ..-+ ++|.++.-.. +-..++.+++.+-++.=.++
T Consensus 443 ~~~sl~~~~~~~~~~v~iiDPpR~G-----lh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 443 LFPSLLTPCCDSETLVAIIDPPRKG-----LHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred ccchhcccCCCCCceEEEECCCccc-----ccHHHHHHHHhccCccceEE
Confidence 521 1 2335 4555553322 22345555554433443333
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.08 E-value=6e-06 Score=72.07 Aligned_cols=94 Identities=31% Similarity=0.366 Sum_probs=59.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C---CCc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L---PEK 144 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~---~~~ 144 (391)
++.+||||||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++++|+.+.. + .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999997 568999999843 111 22777777765531 1 158
Q ss_pred ccEEEEccccccccC----c----chHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLR----E----SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~----e----~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+|+|+........ + ......+..+..+|+|||.++.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 999999873222111 1 1122233344577999998774
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=1.3e-05 Score=74.41 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.|.+.+...++..|||||+|+|.++..+++.+ ++|+++|++ .+++..++... ...+++++++|+..+..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 344455555555578999999999999999999998 589999999 88888887665 2345999999999987654
Q ss_pred ----cccEEEEcc
Q 016351 144 ----KVDVIISEW 152 (391)
Q Consensus 144 ----~~D~Ivse~ 152 (391)
....|++++
T Consensus 93 ~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 93 LLKNQPLLVVGNL 105 (262)
T ss_dssp HCSSSEEEEEEEE
T ss_pred hhcCCceEEEEEe
Confidence 566778765
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.06 E-value=1.9e-05 Score=74.35 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
.++.++|||||++|.++..+++.|+ +|+|||..+|.... ..+ .+|+.+.+|...... .+++|+++|+...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVE- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEeccc-
Confidence 5788999999999999999999999 89999976654332 222 348888888777654 5889999998752
Q ss_pred cccCcchHHHHHHHHhccccCC
Q 016351 156 FLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~g 177 (391)
.+..+.+-+.++|..|
T Consensus 281 ------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ------KPARVAELMAQWLVNG 296 (357)
T ss_pred ------CHHHHHHHHHHHHhcC
Confidence 2345666677788776
No 225
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.05 E-value=2.1e-05 Score=70.28 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=62.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
.+.+|.|+|||-+.++. .... +|+..|+-+ .+ -.++.+|+.+++++ +++|++|+-+ +
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a----------~~-----~~V~~cDm~~vPl~d~svDvaV~CL--S- 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERH-KVHSFDLVA----------VN-----ERVIACDMRNVPLEDESVDVAVFCL--S- 237 (325)
T ss_pred CceEEEecccchhhhhh---cccc-ceeeeeeec----------CC-----CceeeccccCCcCccCcccEEEeeH--h-
Confidence 45789999999988765 2222 688888752 11 46788999999888 8999988622 1
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+-. ..+..++.+++|+|++||.+.+....
T Consensus 238 LMg-tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 238 LMG-TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred hhc-ccHHHHHHHHHHHhccCceEEEEehh
Confidence 111 24678899999999999987655443
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.03 E-value=2.5e-05 Score=65.32 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=59.2
Q ss_pred CCCCEEEEECCcccHHHHHHHH-----cCCCeEEEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQ-----AGARKVYAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~-----~g~~~V~avD~s-~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
.+...|+|+|||.|.|+..++. ....+|++||.+ ..++.+.++.+..+ +..++++..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4568999999999999999998 433489999999 88899988888877 555688888877665444667777
Q ss_pred EE
Q 016351 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 76
No 227
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.99 E-value=3.7e-05 Score=77.82 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
.+..+||||||.|.+...+|+. .-..++|||+. ..+..|.+.+...++.| +.++..|+..+. ++ +++|-|....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4578999999999998888887 44479999999 77777777778888876 888988876432 33 7799888743
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+...- +. -.-+.++..+.+.|+|||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 332221 11 12367888999999999988743
No 228
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0001 Score=71.20 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=88.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-Cc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EK 144 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~ 144 (391)
.+...++.+|||+.++.|.=+..+|+... ..|+|+|.+ .-+...++++++.|+.+ +.++..|...+. .. ++
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 45567889999999999998888887632 357999999 88999999999999988 788888876542 12 36
Q ss_pred ccEEEEccccccccCc-------------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 145 VDVIISEWMGYFLLRE-------------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
||.|+.+...+...-- .....++....++|||||.++-+.+++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999997654332100 12457888889999999999988777654
No 229
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.96 E-value=3.9e-05 Score=72.00 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~ 158 (391)
...+|+|.|.|..+..+... +.+|-+++.. +.+..++.... .| |+.+.+|+..- .| +.|+|+.-|+.+.+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC-CcCeEEEEeecccCC
Confidence 78999999999999888874 5579999999 76665555543 33 88889998876 44 567999999888877
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccc
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+ ++..+|+++++.|+|+|.+|....
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 76 467799999999999999875433
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.92 E-value=4.8e-05 Score=71.22 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=84.8
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH--H---HcCCC-CcEEEEEcccccCCC--CCcccEEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV--K---ANNLQ-DVVEVIEGSVEDIVL--PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~--~---~~~~~-~~v~~i~~d~~~~~~--~~~~D~Iv 149 (391)
.+||-+|.|.|.-...+.|.. ..+|+-||.+ .|++.++++. . .+.+. .+++++..|..++-- .+.||+||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 689999999999999999984 7799999999 9999988322 2 22332 479999999988632 27999999
Q ss_pred EccccccccCcch--HHHHHHHHhccccCCeEEEcccceeEEeec
Q 016351 150 SEWMGYFLLRESM--FDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 150 se~~~~~~~~e~~--l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~ 192 (391)
.+..+..-+.... -..+...+++.|+++|+++.+....|..|-
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 9775443322221 234566678999999999988887776544
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.90 E-value=3.7e-05 Score=64.13 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=50.1
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
++||+|||.|.++..+++.+.. +|+++|.+ .+.+.++++++.|++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999988654 89999999 89999999999998865 8888877665
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.89 E-value=7.2e-06 Score=64.86 Aligned_cols=98 Identities=31% Similarity=0.459 Sum_probs=43.8
Q ss_pred EEECCcccHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEccccc
Q 016351 83 LDVGTGSGILAIWSAQA----GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGY 155 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~----g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~~~~ 155 (391)
||||+..|..+..+++. +..+++++|..+..+.+++.+++.++.++++++.++..+. .++ +++|+|+.+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999888776654 2237999999943556666777677777899999999775 233 7999999876322
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
. + .....+..+.+.|+|||++++..
T Consensus 81 ~---~-~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 Y---E-AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp H---H-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred H---H-HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 2 33445777888999999998764
No 233
>PHA01634 hypothetical protein
Probab=97.87 E-value=8.2e-05 Score=59.32 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
..++++|+|||++.|-.++.++-.||++|+++|.+ .+.+..+++++.+.+-++..-.. +++-. +++|+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 35789999999999999999999999999999999 88899999988876544322221 23222 789988864
No 234
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.87 E-value=0.00018 Score=67.01 Aligned_cols=76 Identities=29% Similarity=0.365 Sum_probs=48.9
Q ss_pred CCEEEEECCccc-HHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEccccc-C----CC-CCcccEE
Q 016351 79 GKTVLDVGTGSG-ILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVED-I----VL-PEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcGtG-~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~-~----~~-~~~~D~I 148 (391)
..++||||||.. +..+..++. |. +++|.|++ ..++.|+++++.| +++++|+++...-.. + .. .+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 358999999985 556666654 66 89999999 8999999999999 999999998764322 1 11 2789999
Q ss_pred EEccccc
Q 016351 149 ISEWMGY 155 (391)
Q Consensus 149 vse~~~~ 155 (391)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9988543
No 235
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.85 E-value=1.8e-05 Score=69.16 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~-~~~D~Ivse 151 (391)
...+|+|.-||.|..++..|..+. .|++||++ -.+..|+.+++-.|++++|+|++||+.++- +. ..+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 446799999999999888888877 79999999 789999999999999999999999998862 22 345677643
Q ss_pred cccccccCcchHHHHHHHHhccccCCeE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+ -+.+.+-+..-+..+...+.|.|.
T Consensus 173 p---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 P---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred C---CCCCcchhhhhhhhhhhhcchhHH
Confidence 2 122222222223334555666643
No 236
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.85 E-value=8.8e-05 Score=70.56 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~i~~d~~ 137 (391)
+.+...+...++.+|||-.||+|.+...+.+. ...+++|+|++ .++..|+.++...+.... ..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 34444445556778999999999998877762 34489999999 788888877766665443 468888876
Q ss_pred cCCC---CCcccEEEEccccccc--cCc----------------chHHHHHHHHhccccCCeEEE
Q 016351 138 DIVL---PEKVDVIISEWMGYFL--LRE----------------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~---~~~~D~Ivse~~~~~~--~~e----------------~~l~~~l~~~~~~L~~gG~ii 181 (391)
.... .++||+|++++.-... ... ..-..++..+.+.|+++|++.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 5433 2689999998642221 000 011235666778999999754
No 237
>PRK10742 putative methyltransferase; Provisional
Probab=97.84 E-value=0.00014 Score=65.62 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc------C--CCCcEEEEEccccc
Q 016351 70 IFQNKHHFQGK--TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN------N--LQDVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~~--~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~------~--~~~~v~~i~~d~~~ 138 (391)
|.+++...++. +|||+=+|+|..++.++..|++ |+++|.+ .+....++.++.. + +..+++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33344344555 8999999999999999999995 9999999 6777777777663 2 23569999999887
Q ss_pred CC--CCCcccEEEEcccccc
Q 016351 139 IV--LPEKVDVIISEWMGYF 156 (391)
Q Consensus 139 ~~--~~~~~D~Ivse~~~~~ 156 (391)
+- .+..||+|..++|...
T Consensus 157 ~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHhhCCCCCcEEEECCCCCC
Confidence 52 2357999999997443
No 238
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.84 E-value=9.7e-05 Score=69.17 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~~~~D~I 148 (391)
...++..|||+.++.|.=+..+++. +...|+|.|++ .-+...++++++.|..+ +.++..|..... ....||.|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccchh
Confidence 4567889999999999988888776 24589999999 88999999999999977 778878888762 22469999
Q ss_pred EEcccccccc--C----------cc-------hHHHHHHHHhccc----cCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL--R----------ES-------MFDSVICARDRWL----KPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~--~----------e~-------~l~~~l~~~~~~L----~~gG~ii~~~~~~~ 188 (391)
+.+...+... . +. ....+|+.+.+++ +|||+++-+.+++.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 9976544321 0 00 2346788888999 99999997766654
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.82 E-value=0.00022 Score=66.42 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=62.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
..|....+.....+|||+|||+|.-...+... ...+++++|.| .|++.++..++................+...-.+
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP 102 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC
Confidence 33444455667789999999999765555443 35589999999 9999999887654321111111111111111134
Q ss_pred ccEEEEc-cccccccCcchHHHHHHHHhccccC
Q 016351 145 VDVIISE-WMGYFLLRESMFDSVICARDRWLKP 176 (391)
Q Consensus 145 ~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~ 176 (391)
.|+|++. .++... . .....+++.+-+.+++
T Consensus 103 ~DLvi~s~~L~EL~-~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 103 DDLVIASYVLNELP-S-AARAELVRSLWNKTAP 133 (274)
T ss_pred CcEEEEehhhhcCC-c-hHHHHHHHHHHHhccC
Confidence 5999973 333322 2 3455666666555555
No 240
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=6.3e-05 Score=65.94 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=65.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EKVD 146 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~-~~~D 146 (391)
++.+|+|||+-.|.++..+++. +. .+|+|||+.+|-. ..+ |.++++|+++-+ ++ .++|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------IPG-VIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------CCC-ceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 5689999999999999999987 33 2499999986421 123 999999998753 23 4579
Q ss_pred EEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016351 147 VIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+|++........ ......++-+...|+|+|.++.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 99998753221111 1123344555789999998873
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.75 E-value=0.00033 Score=64.69 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHH-HHHHHHc-CC-CeEEEEech-HHHHHHHHHHH-HcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016351 79 GKTVLDVGTGSGIL-AIWSAQA-GA-RKVYAVEAT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcGtG~l-~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~-~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~ 152 (391)
.++|+=||||.=.+ ++.+++. +. ..|.++|++ ..++.|++.++ ..++.++++|+.+|..+.... ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999998555 4556654 32 379999999 89999999888 678888899999999887544 7899998633
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. .....-..++..+.+.++||+.++..
T Consensus 201 lVg--~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG--MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcc--cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 221 11224578899999999999988855
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.67 E-value=0.00051 Score=57.03 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=65.4
Q ss_pred EEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCCC--cccEEEEcccc
Q 016351 82 VLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLPE--KVDVIISEWMG 154 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~~~~~--~~D~Ivse~~~ 154 (391)
++|+|||+|... .+++... ..++++|.+ .++..++......+... +.++..+... +++.. .+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444422 279999999 77777544443221111 6788888776 55553 79999432221
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+.. . ....+..+.+.|+|+|.++.....
T Consensus 130 ~~~---~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HLL---P-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hcC---C-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 111 1 567788899999999988865443
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.65 E-value=0.00074 Score=59.78 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 62 RMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 62 r~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
+...+..+|..- ++..++.+||-||+.+|.-.-.++.- | ...|+|||.| ......-..+++. .+|-.+.+|
T Consensus 54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~D 130 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILED 130 (229)
T ss_dssp TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-
T ss_pred hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeecc
Confidence 345556666543 34567899999999999988888875 5 4579999999 5443333444432 337778888
Q ss_pred cccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 136 VEDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... +-+.+|+|+++..- ......+...+..+||+||.+++.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 87742 23789999997631 124566677788999999998854
No 244
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.60 E-value=6.8e-05 Score=68.50 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC----------------CC-----------C
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN----------------LQ-----------D 127 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~----------------~~-----------~ 127 (391)
..++.++||||||.-+.....|..-+++|+..|.. ...+..++-++..+ -. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 34678999999999776555555556689999988 66655554443221 00 1
Q ss_pred cE-EEEEcccccCC-------CCCcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 128 VV-EVIEGSVEDIV-------LPEKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ~v-~~i~~d~~~~~-------~~~~~D~Ivse~~~~-~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.| .++..|+.... +|+++|+|++-.... .-.........++.+.++|||||.+|..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 13 37778887742 234699999843222 1122234567788889999999998853
No 245
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00038 Score=57.05 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=78.5
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
...+...+..+.+|||+|.|.+.+.+++.|....+|+|++ =.+.+++-.+-+.|+.....|...|+..+++. .|..++
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vv 143 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVV 143 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEE
Confidence 4444445556799999999999999999997789999999 57788888888889988899999998887663 444444
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. +..|..++.+-+++..-|..+..++-+
T Consensus 144 i------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 144 I------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred E------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 3 122344555666666566777776643
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.50 E-value=0.00032 Score=71.66 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC---------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA---------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L 141 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~---------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~ 141 (391)
...+|||.+||+|.+...+++... .+++|+|++ .++..++.++...+. ..+.+...|..... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 346899999999999888776421 368999999 888999888876652 12556666544321 1
Q ss_pred CCcccEEEEccc
Q 016351 142 PEKVDVIISEWM 153 (391)
Q Consensus 142 ~~~~D~Ivse~~ 153 (391)
.++||+||+++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999874
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.45 E-value=0.002 Score=61.07 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccC-
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDI- 139 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~- 139 (391)
..|...+ .++..++|+|||+|.-+..+.++ + ..+.++||+| ++++.+.+.+....++. .|.-+.+|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3455443 24568999999999765443332 1 2369999999 89999988887444443 244488888663
Q ss_pred ---CC---CCcccEEEE--ccccccccCcchHHHHHHHHhc-cccCCeEEEcc
Q 016351 140 ---VL---PEKVDVIIS--EWMGYFLLRESMFDSVICARDR-WLKPTGVMYPS 183 (391)
Q Consensus 140 ---~~---~~~~D~Ivs--e~~~~~~~~e~~l~~~l~~~~~-~L~~gG~ii~~ 183 (391)
.. +....+++. ..++.+-.. ....+++.+++ .|+||+.+++.
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~--ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRP--EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHH--HHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 234567765 223333222 24567888888 99999988764
No 248
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.38 E-value=0.00034 Score=67.33 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.++..++|+|||-|..+...+..+...+++++.+ -.+..+.......++.++..++.+|+...+++ ..||.+-+ .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~---l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF---L 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE---E
Confidence 3556899999999999999998876689999999 66777777777777777778888888887766 78999886 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
....+...+..++.++.|.++|||.++....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 2233344677889999999999999885543
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.38 E-value=0.0033 Score=55.49 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~~~~~D~Ivse~~~~ 155 (391)
+.++.||||-.+.|...+.+.+ +..+++.|++ .-++.|.++++++++.+++++..+|.... .....+|+|+.-.||.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 3459999999999999999875 5689999999 88999999999999999999999998553 3335899999866654
Q ss_pred cccCcchHHHHHHHHhcccc
Q 016351 156 FLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~ 175 (391)
.+ +..++++....|+
T Consensus 97 ~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 97 TL-----IREILEEGKEKLK 111 (226)
T ss_pred HH-----HHHHHHHhhhhhc
Confidence 42 3445555544444
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.33 E-value=0.001 Score=54.87 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=58.1
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC-cccEEEEccccccccCcch-------HHHHHHHHh
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE-KVDVIISEWMGYFLLRESM-------FDSVICARD 171 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~-~~D~Ivse~~~~~~~~e~~-------l~~~l~~~~ 171 (391)
+|+|+|+. .+++.++++.+..++.++|++++..=+++.. ++ ++|+++-++ ||....... --..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 8999999999999998899999987666542 34 899999875 776554421 223466677
Q ss_pred ccccCCeEEEccc
Q 016351 172 RWLKPTGVMYPSH 184 (391)
Q Consensus 172 ~~L~~gG~ii~~~ 184 (391)
++|+|||++++..
T Consensus 80 ~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 80 ELLKPGGIITIVV 92 (140)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhhccCCEEEEEE
Confidence 8999999988653
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00011 Score=61.08 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccC--
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDI-- 139 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~i~~d~~~~-- 139 (391)
.-.+.+......++.||++|.|- |+-++++|.. ....|...|-+ ..++-.+++...|-... ++.++.-+...-
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 33344444445568899999995 6777777764 55679999999 78888888777763321 232222222211
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.....||+|+|. .++...+....+.+.+.++|+|.|..+
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee
Confidence 112589999982 223333356788899999999999854
No 252
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.31 E-value=0.0008 Score=65.39 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC--CCCcccEEEEcc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
+.+|||.=+|||+-++..++. +..+|++-|+| ++++.++++++.|++++ ++++.+.|+..+- ..+.||+|=.|+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 468999999999999888876 66799999999 89999999999999998 7999999998865 458999999877
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|. ...+++.+.+.++.||++...
T Consensus 130 fGS-------p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 FGS-------PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------ccHhHHHHHHHhhcCCEEEEe
Confidence 653 346788888899999988754
No 253
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0024 Score=55.88 Aligned_cols=102 Identities=28% Similarity=0.377 Sum_probs=76.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccC--CCC-CcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~i~~d~~~~--~~~-~~~D~Ivs 150 (391)
.++.+||.||-|-|+..-.+.++...+-+.||.+ .+++.+++ +|+. ++|.++.+.-++. .++ +.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence 5789999999999999999998877678889999 77766554 4443 4577777766664 233 78999997
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+..+ -..| ++..+.+.+.++|||+|++-....
T Consensus 176 DTy~--e~yE-dl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 176 DTYS--ELYE-DLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred echh--hHHH-HHHHHHHHHhhhcCCCceEEEecC
Confidence 5532 2233 567778889999999998865443
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.14 E-value=0.011 Score=53.14 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~I 148 (391)
...+.+++||-||-.. +.|++++-. ..++|+.+|++ .+++..++.+++.|++ |+.++.|+++--+ .++||++
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 3456889999999776 445554443 45689999999 9999999999999998 9999999988422 2899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCe
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
++++.-. + .-+..++......||..|
T Consensus 117 ~TDPPyT-~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPPYT-P---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EE---SS-H---HHHHHHHHHHHHTB-STT
T ss_pred EeCCCCC-H---HHHHHHHHHHHHHhCCCC
Confidence 9998532 2 235566777677777766
No 255
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.14 E-value=0.0039 Score=59.90 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=85.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~~~~D~ 147 (391)
+...++.+|||+.+-.|.=+.++|.. +-..|+|.|.+ .-+.....++.+.|+.+ ..++..|..+++ ++++||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence 34567899999999999766665554 44579999999 88999999999999877 567777877653 3458999
Q ss_pred EEEcccccc--ccCc-----------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 148 IISEWMGYF--LLRE-----------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivse~~~~~--~~~e-----------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
|+.+...+. +... .....++.....++++||+++-+.+++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 998765443 1111 12346677778999999999988777664
No 256
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.12 E-value=0.0034 Score=55.25 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=63.4
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcE
Q 016351 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----A-GARKVYAVEAT-KMSDHARTLVKANNLQDVV 129 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~----~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v 129 (391)
+++.....-.|++.|-+. +++.|+++|.-.|.-+++.|. . +..+|++||++ .. ..++..+...+.++|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCce
Confidence 355566666777766654 568999999999876665553 2 34589999997 42 223334455666789
Q ss_pred EEEEcccccCC-------C--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 130 EVIEGSVEDIV-------L--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 130 ~~i~~d~~~~~-------~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++++||..+.. . +....+|+-+. .+ .++..+ ..|.....++++|+++|....
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs-~H--~~~hvl-~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS-SH--THEHVL-AELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHH-HHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC-Cc--cHHHHH-HHHHHhCccCCCCCEEEEEec
Confidence 99999987752 1 12344666444 22 223334 346668899999999886544
No 257
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0038 Score=61.28 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=73.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH-HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc-cccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR-TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYF 156 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~-~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~-~~~~ 156 (391)
++|-+|||.-.++..+-+.|...|+-+|.| ..+..+. .+++.. ....+...|+..+.++ ++||+|+-.. ++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCccccc
Confidence 899999999999999999999999999999 4443332 222222 2389999999999888 8999999844 3333
Q ss_pred ccCcch------HHHHHHHHhccccCCeEEE
Q 016351 157 LLRESM------FDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 157 ~~~e~~------l~~~l~~~~~~L~~gG~ii 181 (391)
+..+.. ....+..+.++|+++|+.+
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 333322 2456677899999999866
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0052 Score=53.38 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=78.4
Q ss_pred HhHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 61 VRMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 61 ~r~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+...+..+|..- ++..++.+||=||+-+|.-.-.++.- |...|+|||.| .+.......+++. +++-.+.+|
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~D 132 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILED 132 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecc
Confidence 3445566666644 34567899999999999887777775 65679999999 5443333333331 337777788
Q ss_pred cccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 136 VEDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... +-+.+|+|+.+..- .+...-+...+..+|+++|.++..
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cCCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEE
Confidence 87642 22789999987531 123556677889999999977644
No 259
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.98 E-value=0.00041 Score=63.31 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~ 155 (391)
.+..+||+|||.|-... ......+++.|.+ ..+..+++. +...+..+|+..++.+ ..||.+++..+-+
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 47899999999986542 1233368999999 777666542 1125777899888776 8999999977777
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+.....-..+++++.+.|+|||.+++
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 777666677889999999999998763
No 260
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.97 E-value=0.00038 Score=63.72 Aligned_cols=97 Identities=25% Similarity=0.356 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHH-HHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~-~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+..|.|+-+|-|.+++ .+.++||+.|+|+|.+ ..++..+++++.|+..++..++.+|.+...+....|-|.. +-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL---GL 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL---GL 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee---cc
Confidence 45789999999999999 8899999999999999 8899999999999998889999999998877788898884 44
Q ss_pred cccCcchHHHHHHHHhccccCCeE-EE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGV-MY 181 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~-ii 181 (391)
....+.-.+.. .++|+|.|- ++
T Consensus 271 lPSse~~W~~A----~k~Lk~eggsil 293 (351)
T KOG1227|consen 271 LPSSEQGWPTA----IKALKPEGGSIL 293 (351)
T ss_pred ccccccchHHH----HHHhhhcCCcEE
Confidence 44445444433 345677543 44
No 261
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.011 Score=54.83 Aligned_cols=103 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEE--------------------------
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEV-------------------------- 131 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~-------------------------- 131 (391)
..+||-=|||.|.|+..++..|. .+-|=|.| -|+-...=.+..-..++.+++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 46799999999999999999998 58888999 675443333321112222211
Q ss_pred -------------EEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 132 -------------IEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 132 -------------i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..||+.+.-.. +.||+|+. .++.+.....-.+++.+.+.|+|||+.|--.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 22343333111 36999986 35555555556689999999999998884433
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.0051 Score=52.72 Aligned_cols=94 Identities=26% Similarity=0.293 Sum_probs=60.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-ccccC--------CCC-Cc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG-SVEDI--------VLP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~--------~~~-~~ 144 (391)
.++.+|||+||..|.++..+.+. ....|.|||+-... .... ++++++ |+++. .+| .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPEG-ATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCCC-cccccccccCCHHHHHHHHHhCCCCc
Confidence 46799999999999999998886 34479999986321 1112 566666 66653 134 78
Q ss_pred ccEEEEcccccc-----ccCcch---HHHHHHHHhccccCCeEEE
Q 016351 145 VDVIISEWMGYF-----LLRESM---FDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D~Ivse~~~~~-----~~~e~~---l~~~l~~~~~~L~~gG~ii 181 (391)
+|+|+|+..... .++... ...++.-....+.|+|.++
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999764221 112111 1223344456778999877
No 263
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.85 E-value=0.00028 Score=61.16 Aligned_cols=92 Identities=24% Similarity=0.320 Sum_probs=61.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-ccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS-EWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs-e~~~~ 155 (391)
++.++||+|+|.|-++..++.. ..+|+|.|.| .|....+++ ++ .++.. .+-....-++|+|.| +.+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~~-~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLTE-IEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceeee-hhhhhcCceeehHHHHHHHHh
Confidence 3479999999999999988876 3479999999 887665432 22 12110 011111247999998 33333
Q ss_pred cccCcchHHHHHHHHhccccC-CeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKP-TGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~-gG~ii~~ 183 (391)
+ -+.-.+++.+..+|+| +|.+|..
T Consensus 182 c----~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C----FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h----cChHHHHHHHHHHhccCCCcEEEE
Confidence 3 2455678888889999 8887755
No 264
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.83 E-value=0.0075 Score=55.28 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=64.7
Q ss_pred CEEEEECCccc--HHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------------CC
Q 016351 80 KTVLDVGTGSG--ILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------------VL 141 (391)
Q Consensus 80 ~~VLDlGcGtG--~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------------~~ 141 (391)
...||||||-= .....+|+. ...+|+-||.+ -.+..++.....+.- .+..++++|+++. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 67999999942 234445553 44589999999 567888887776532 2489999999884 23
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+++=+++...+ +++..+.....++..++..|.||..++++..+.
T Consensus 149 ~rPVavll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 355666665554 455555578899999999999999999886653
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0034 Score=58.88 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=67.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~- 142 (391)
..+....+.+..+.+||+|.|.|.-..++-.. -.+.++.+|.|+.+...-.-+..|-...+......|+..- +++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 33444456677788999999988755444333 1346888898865555555555554433334444444332 222
Q ss_pred -CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 -EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..|++++. .+..+. .+..+...++.+..++.|||.+++.
T Consensus 183 ad~ytl~i~--~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 183 ADLYTLAIV--LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cceeehhhh--hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 55666654 122222 2233555788888999999988754
No 266
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.68 E-value=0.0046 Score=54.60 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=60.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivse~~~~ 155 (391)
.++|||||=+...... ..+.-.|++||+++. . -.+.+.|+.+.++| ++||+|++.++-.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------~------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------H------PGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC---------C------CCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6899999976543322 233336999999831 0 35567788776654 7999999988766
Q ss_pred cccCcchHHHHHHHHhccccCCeE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+.........++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 666555667889999999999998
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.65 E-value=0.01 Score=53.70 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
+.+.+.+...+ .+..+|+|||||.=.+++..... ....++|+|++ .+++.........+.. .++...|...-..
T Consensus 93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 34444444432 23689999999998888765544 22389999999 9999999999998877 6666668777655
Q ss_pred CCcccEEEE
Q 016351 142 PEKVDVIIS 150 (391)
Q Consensus 142 ~~~~D~Ivs 150 (391)
+...|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 688999885
No 268
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.62 E-value=0.016 Score=54.54 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=64.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~ 141 (391)
.+...+...++..++|.=+|.|..+..+++. +..+|+|+|.+ .++..|++..+.. .++++++++++.++. .
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 3444455567789999999999999998876 34689999999 8999998887653 467999999988752 1
Q ss_pred C-CcccEEEEcc
Q 016351 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivse~ 152 (391)
+ .++|.|+.++
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 2 5799999865
No 269
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.61 E-value=0.0025 Score=59.63 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHH-------HHHHHHHHcCCCC-cEEEEEcccccCCCC--Cc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSD-------HARTLVKANNLQD-VVEVIEGSVEDIVLP--EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~-------~a~~~~~~~~~~~-~v~~i~~d~~~~~~~--~~ 144 (391)
..+|+.|.|=-.|||.+...+|..|+ .|+|.|++ .++. -.+.++++.|... -+.++.+|..+-.+- ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 45789999999999999999999999 89999999 7665 2466788877543 367788888775443 68
Q ss_pred ccEEEEccc
Q 016351 145 VDVIISEWM 153 (391)
Q Consensus 145 ~D~Ivse~~ 153 (391)
||.|||++.
T Consensus 285 fDaIvcDPP 293 (421)
T KOG2671|consen 285 FDAIVCDPP 293 (421)
T ss_pred eeEEEeCCC
Confidence 999999884
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.01 Score=52.58 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=65.2
Q ss_pred CCCCC-CEEEEECCcccHHHHHHHHcCC----------CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016351 75 HHFQG-KTVLDVGTGSGILAIWSAQAGA----------RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 75 ~~~~~-~~VLDlGcGtG~l~~~~a~~g~----------~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--- 140 (391)
+.+++ ++|+|+.+..|.++..+++.-. +++++||+.+|+. ++. |.-+++|+....
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHH
Confidence 34444 6899999999999999887521 1399999987642 223 788899988753
Q ss_pred -----CC-CcccEEEEccccccc-cCc-------chHHHHHHHHhccccCCeEEE
Q 016351 141 -----LP-EKVDVIISEWMGYFL-LRE-------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 -----~~-~~~D~Ivse~~~~~~-~~e-------~~l~~~l~~~~~~L~~gG~ii 181 (391)
+. ++.|+|+|+...... .++ ..+...|.-...+|+|||.|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 33 699999997643221 111 112233444568999999987
No 271
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.18 E-value=0.031 Score=50.78 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHH-----cCCCCcEEEEEcccccC---C-CCCc-ccE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA-----NNLQDVVEVIEGSVEDI---V-LPEK-VDV 147 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~-----~~~~~~v~~i~~d~~~~---~-~~~~-~D~ 147 (391)
+...||++|+|+|..++.+|..+...|.-.|..........+... +++...+.+...+-.+. . .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998654478888887444444444333 33332344443332221 1 1133 899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
|++.-+ ...++....+...+..+|..++.
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~ 194 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGT 194 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCe
Confidence 997322 22233455667777778888883
No 272
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.13 E-value=0.003 Score=57.92 Aligned_cols=110 Identities=24% Similarity=0.361 Sum_probs=62.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH-------HHHHHH--HcCCCCcEEEEEcccccCCC--CC
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH-------ARTLVK--ANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~-------a~~~~~--~~~~~~~v~~i~~d~~~~~~--~~ 143 (391)
...+++|||+|||+|+.++.+...|+..+...|.| ..++. ++..+. .+....-..+++.+..++.+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35679999999999999999999987789999988 55521 111111 11111112333331112222 13
Q ss_pred --cccEEEEccccccccCcchHHHH-HHHHhccccCCeEEEcccceeE
Q 016351 144 --KVDVIISEWMGYFLLRESMFDSV-ICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 144 --~~D~Ivse~~~~~~~~e~~l~~~-l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.||+|.+.-.-|... .++.+ ......+++++|+++...-..|
T Consensus 194 ~~~ydlIlsSetiy~~~---~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID---SLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred ccchhhhhhhhhhhCcc---hhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 788888633223332 23333 5556678889998775543333
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.92 E-value=0.016 Score=54.11 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=50.7
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~Ivse~ 152 (391)
+|+|+.||.|.++..+.++|...|.++|++ .+++..+.+.. + .++.+|+.++.. ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 589999999999999999999889999999 66666655542 1 256778877653 35799999855
No 274
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.90 E-value=0.026 Score=48.80 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEechHHH-------HHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMS-------DHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~-~V~avD~s~~~-------~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
....++.+|+|+=.|.|.++..++.. |++ .|++.=..+.. ...+...++....| ++.+-.+...+..+++
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCCc
Confidence 34567899999999999999998886 432 67776443221 11122222223333 6777777777776688
Q ss_pred ccEEEEccccccc----cCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFL----LRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~----~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.|++......+.+ .+......+..++.+.|||||+++....
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 8888764332222 2234567788889999999999876544
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.86 E-value=0.032 Score=50.25 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=44.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechH-HHHH---HHHHHHHcCCC-----CcEEEEEcccccC-CC-CCcccEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDH---ARTLVKANNLQ-----DVVEVIEGSVEDI-VL-PEKVDVI 148 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~-~~~~---a~~~~~~~~~~-----~~v~~i~~d~~~~-~~-~~~~D~I 148 (391)
.+|||.=+|-|.-++.+|..|. +|+++|.|+ +... +.++.....-. .+|+++++|..++ .. ..++|+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999999998888 699999994 3322 33333333221 3699999998885 32 3799999
Q ss_pred EEccccc
Q 016351 149 ISEWMGY 155 (391)
Q Consensus 149 vse~~~~ 155 (391)
..++|..
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 9999844
No 276
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.027 Score=53.62 Aligned_cols=97 Identities=26% Similarity=0.273 Sum_probs=77.2
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~~~ 154 (391)
..+|||.=+|||+-++..+.. +..+|+.-|+| ...+.+++|++.|...+ ..+++.|...+... ..||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 688999999999999988876 55489999999 89999999999994444 67777887776433 789999887765
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.- ..+++++.+.++.+|++-..
T Consensus 132 SP-------aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 SP-------APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC-------chHHHHHHHHhhcCCEEEEE
Confidence 43 34677888888999977643
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.81 E-value=0.014 Score=57.69 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~ 155 (391)
-..|+|..+|.|.++.++.+...- .|+-+.....+. .+-.-|+ |-+.+.=.+.++ .|..||+|.++.+..
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~----vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLP----VIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEecccCCCCcch----hhhhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 378999999999999888776431 122221112121 1222344 334443333343 468999999976655
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.....-.+..++-++.|.|+|+|.+|+......+
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 5555555788999999999999999977654443
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.80 E-value=0.017 Score=55.92 Aligned_cols=93 Identities=27% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-cc----ccCCCCCcccEEE
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SV----EDIVLPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~----~~~~~~~~~D~Iv 149 (391)
++.+|+-+|||. |+++..+++. |+++|+++|.+ .-++.|++.....- +..... +. .++.-...+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~----~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV----VVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE----eecCccccHHHHHHHHhCCCCCCEEE
Confidence 445899999998 9998888876 88899999999 77888876432210 111111 11 1111123699998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
- ..+ ....+..+.++++++|.++..
T Consensus 244 e-~~G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 E-AVG--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred E-CCC--------CHHHHHHHHHHhcCCCEEEEE
Confidence 4 122 123566677889999988743
No 279
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.0044 Score=60.75 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C---CcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P---EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~---~~~D~Iv 149 (391)
++.+|||.=|+||+-++..|+. |..+|+|-|.+ ..+...+++++.|+..+.++..+.|+..+.. + ..||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 3468999999999999988886 67789999999 8899999999999999999999999877532 2 7899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.|+.|. ...+|+.+.+.++.||++....
T Consensus 189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cCCCCC-------ccHHHHHHHHHhhcCCEEEEEe
Confidence 877543 3467888889999999887553
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.60 E-value=0.061 Score=51.24 Aligned_cols=92 Identities=27% Similarity=0.292 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-cccCC-CCCcccEEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-VEDIV-LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-~~~~~-~~~~~D~Ivs 150 (391)
..++++|+-+|+|- |.+++.+|++ |+ +|+++|.+ +.++.|++.-.. .++... ..... ..+.+|+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEE
Confidence 45789999999982 4677778884 85 89999999 878888765432 333322 11111 1245999996
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
-. . ...+....+.|+++|.++..-.
T Consensus 236 tv----~------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 236 TV----G------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred CC----C------hhhHHHHHHHHhcCCEEEEECC
Confidence 22 1 2235556678999999885544
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.59 E-value=0.064 Score=54.21 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=59.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----------CC--
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----------IV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-----------~~-- 140 (391)
.++.+|+-+|||. |..++.+|+. |+ .|+++|.+ ..++.+++ .|. +++.-+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcchh
Confidence 4678999999998 8888887876 88 79999999 66665554 332 221111100 00
Q ss_pred ---------CC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 ---------LP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---------~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. +.+|+||.-. ..........+.+...+.+||||+++.-
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 3689999632 1111111223347777889999998754
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.56 E-value=0.025 Score=52.07 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CCC-CcEEEEEcccccCC--C-CCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NLQ-DVVEVIEGSVEDIV--L-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~~-~~v~~i~~d~~~~~--~-~~~~D~Iv 149 (391)
..++||-||.|.|......+++ ....+.-+|+. ..++..++..... ++. .+|.+.-||-..+- . .++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999888777776 34478899999 7788887766643 333 46899999865541 2 37999999
Q ss_pred EccccccccCcch-HHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+.-......+.. ...++.-+.+.||++|+++...-.+|+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 8653333332221 345677788999999998866544443
No 283
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.41 E-value=0.042 Score=47.85 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC-------CCCcEEEEEcccccCCCC----Ccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN-------LQDVVEVIEGSVEDIVLP----EKV 145 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~-------~~~~v~~i~~d~~~~~~~----~~~ 145 (391)
.-...|||||-|.|.+.++... -.-+.|.|+- .+.++.++++.+.. +.+ +.++..+....... ++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccc
Confidence 3568999999999999888874 3468999999 88899888887754 333 56665554443211 111
Q ss_pred c-EEEEcccccccc----CcchHHHHHHHHhccccCCeEEE
Q 016351 146 D-VIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D-~Ivse~~~~~~~----~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+ ..++-+=.++.- +.-....++....-+|++||.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 1 112211011110 00112456667777889999876
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.59 E-value=0.14 Score=49.21 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse 151 (391)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ ..++.+++ .|....+..-..+..++.. .+.+|+|+.-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 34678999999875 6677777776 77789999998 66666654 3432111111112222111 1358988852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. ...+....++|+++|.++..
T Consensus 243 -~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 -SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 221 12345556789999998854
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.58 E-value=0.074 Score=52.13 Aligned_cols=105 Identities=22% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-c----ccCCCCCccc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-V----EDIVLPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-~----~~~~~~~~~D 146 (391)
...++.+||.+|||. |.++..+|++ |..+|++++.+ ...+.+++.. +. ..+.....+ . .++.....+|
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 345678999999988 8888888776 66569999998 7777776542 11 112221111 1 1121124699
Q ss_pred EEEEccccc------------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGY------------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~------------~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.-.-+. .+.........+....+.|+++|.++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 988622100 0001111234567777889999988744
No 286
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.53 E-value=0.76 Score=40.67 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=62.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHH-------------------------------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKA------------------------------- 122 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~------------------------------- 122 (391)
.+-++.|-.||+|.+.-.+.-. ..+.|+|-|++ ++++.|++|..-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4468999999999875444332 23479999999 999999988751
Q ss_pred ----------cCCCCcEEEEEcccccC------CCCCcccEEEEccc-cccccCcc-----hHHHHHHHHhccccCCeEE
Q 016351 123 ----------NNLQDVVEVIEGSVEDI------VLPEKVDVIISEWM-GYFLLRES-----MFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 123 ----------~~~~~~v~~i~~d~~~~------~~~~~~D~Ivse~~-~~~~~~e~-----~l~~~l~~~~~~L~~gG~i 180 (391)
.|-.....+...|+.+. ......|+|+.+.. +....|++ ....++..+...|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11112266777777763 33345799999763 44444443 4678899999999655655
Q ss_pred Ec
Q 016351 181 YP 182 (391)
Q Consensus 181 i~ 182 (391)
..
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 287
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.45 E-value=0.068 Score=47.55 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=54.0
Q ss_pred CCCEEEEECCcccHH-HHH-HHHcCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC------CCcccE
Q 016351 78 QGKTVLDVGTGSGIL-AIW-SAQAGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l-~~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~~~~------~~~~D~ 147 (391)
++.++||||.|.-.+ -+. .-..|. +.+|.|++ ..++.|+.++..| +++..|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999987433 221 222366 68999999 7899999999999 888778877654332211 278999
Q ss_pred EEEcccc
Q 016351 148 IISEWMG 154 (391)
Q Consensus 148 Ivse~~~ 154 (391)
.+|++..
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9998743
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.15 E-value=0.11 Score=48.78 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=61.6
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc--ccC------CCC-Cc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV--EDI------VLP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~--~~~------~~~-~~ 144 (391)
..+.+||-+|+|. |++++.+|++ |+++|+.+|.+ .-++.|++ + |... +....... .++ .+. ..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhccccC
Confidence 4678999999997 9999999998 99999999999 88888887 2 3221 22221111 111 112 45
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.+.-. . ....++.....++++|.++..
T Consensus 243 ~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 243 PDVTFDCS---G------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCeEEEcc---C------chHHHHHHHHHhccCCEEEEe
Confidence 78887511 1 233455556778999987644
No 289
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.08 E-value=0.42 Score=44.49 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---- 140 (391)
+.....+...++...+|.=-|.|..+..+.+.. ..+++|+|.+ .+++.|+++....+ ++++++++.+.++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 344455566778999999999999998888774 3579999999 89999999888765 56999999988763
Q ss_pred -CC-CcccEEEEcc
Q 016351 141 -LP-EKVDVIISEW 152 (391)
Q Consensus 141 -~~-~~~D~Ivse~ 152 (391)
.. +++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 11 5889988764
No 290
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.01 E-value=0.41 Score=48.48 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=60.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~- 141 (391)
.|.+.+...+..+|.|-.||+|.+...+++. + ...++|.|++ .....|+.+.--+|+...+...++|...-+.
T Consensus 177 liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~ 256 (489)
T COG0286 177 LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKH 256 (489)
T ss_pred HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcc
Confidence 3444444345579999999999876666554 2 2469999999 8899999999888886435666666544321
Q ss_pred -----CCcccEEEEcccc
Q 016351 142 -----PEKVDVIISEWMG 154 (391)
Q Consensus 142 -----~~~~D~Ivse~~~ 154 (391)
.++||.|++++..
T Consensus 257 ~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 257 DDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cccCCccceeEEEeCCCC
Confidence 2679999997643
No 291
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.84 E-value=0.1 Score=49.67 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=49.7
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~Ivse~ 152 (391)
+++|+-||.|.+++.+.++|...|.|+|++ ..++.-+.+.. ....+|+.++.. ++.+|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 689999999999999999998889999999 66666665553 778899998853 23699999744
No 292
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.54 E-value=0.029 Score=54.13 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=66.6
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
|--.|+..||..++.....|... . ..++..|-|+-||.|.+++.+++.+. +|++-|.+ +++++.+.+++
T Consensus 223 Fk~DfskVYWnsRL~~Eherlsg-------~--fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEHERLSG-------L--FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIK 292 (495)
T ss_pred EEEecceEEeeccchhHHHHHhh-------c--cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhcc
Confidence 33446666765444433333322 2 24678899999999999999999985 89999999 99999999999
Q ss_pred HcCCCCc-EEEEEcccccC
Q 016351 122 ANNLQDV-VEVIEGSVEDI 139 (391)
Q Consensus 122 ~~~~~~~-v~~i~~d~~~~ 139 (391)
.|.+... |++...|..++
T Consensus 293 lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccccchhheeeecccHHHH
Confidence 9988776 88888887664
No 293
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.49 E-value=0.4 Score=43.96 Aligned_cols=76 Identities=20% Similarity=0.362 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Iv 149 (391)
.+.++.|+-+| -.-+.+++++-.| +++|..||++ ..+....+.+++.|++| ++.+.-|+++. +| ++||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhccc-ChHHHHhhCCeee
Confidence 45778999999 4446666655544 6689999999 89999999999999976 88898899884 33 7999999
Q ss_pred Ecccc
Q 016351 150 SEWMG 154 (391)
Q Consensus 150 se~~~ 154 (391)
.++..
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 98753
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=93.45 E-value=0.29 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..++..|||--||+|.-++++.+.|- +.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46889999999999999999988876 79999999 899999988754
No 295
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.38 E-value=0.27 Score=44.12 Aligned_cols=99 Identities=26% Similarity=0.251 Sum_probs=62.2
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H----HHHHHHHHHHHcCCCCcEEEEEcccccCC----C
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K----MSDHARTLVKANNLQDVVEVIEGSVEDIV----L 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~----~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~ 141 (391)
.++..++.+||=||+++|.-.-.++.. |. .-|||||.| . ++..|+++ .| |-.|..|++... +
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tN-iiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TN-IIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CC-ceeeeccCCCchheeee
Confidence 345678899999999999876666665 32 369999988 3 22333322 12 555666776632 1
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-.-+|+|+++....- ....+.-....+||+||-++++
T Consensus 224 VgmVDvIFaDvaqpd-----q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPD-----QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCCch-----hhhhhhhhhhhhhccCCeEEEE
Confidence 146788888653211 1222333456899999988865
No 296
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.32 E-value=0.18 Score=47.50 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C-
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L- 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~- 141 (391)
+...+...++..++|.=-|.|..+..+.+. +..+|+|+|.+ .+++.|+++.+.. .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 334444567789999999999999998876 44699999999 8888888766543 577999999988862 2
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
..++|.|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 26899999864
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.28 E-value=0.15 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s 110 (391)
+.....|||||.|+|.-.+.+.|. +=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345789999999999999999998 57888864
No 298
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.20 E-value=0.86 Score=41.66 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=70.6
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH---c-C--CCeEEEEech----------------------
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ---A-G--ARKVYAVEAT---------------------- 110 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~---~-g--~~~V~avD~s---------------------- 110 (391)
...|...+..++...+...-...|+++||-.|..++.++. . + .+++++.|.=
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 4567777788887766443346799999999976655432 1 2 3468887620
Q ss_pred -H----HHHHHHHHHHHcCC-CCcEEEEEcccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 111 -K----MSDHARTLVKANNL-QDVVEVIEGSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~----~~~~a~~~~~~~~~-~~~v~~i~~d~~~~~~--~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. .++..++++...++ .++++++.|.+.+.-. + +++-++..+. . ..+ .....|..++..|.|||++|
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lYe-sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LYE-STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---chH-HHHHHHHHHHhhcCCCeEEE
Confidence 0 12333344444443 4579999999877422 1 4444444332 1 112 24456888889999999999
Q ss_pred ccccee
Q 016351 182 PSHARM 187 (391)
Q Consensus 182 ~~~~~~ 187 (391)
+..+..
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 887655
No 299
>PRK13699 putative methylase; Provisional
Probab=92.88 E-value=0.49 Score=42.75 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
.++..|||--||+|.-+.++.+.|- +.+|+|++ ...+.|.++++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 5788999999999999999888877 69999999 8888888887653
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.84 E-value=0.9 Score=41.97 Aligned_cols=124 Identities=11% Similarity=0.095 Sum_probs=79.8
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVE 137 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~i~~d~~ 137 (391)
..|...+.+.+.+.+... ...|+.||||-=.....+......+++=+|..++++.-++.++..+. ..+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 456666666666655432 35699999997655544432211245555555677777777776543 356889999986
Q ss_pred cC-----C---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 138 DI-----V---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 138 ~~-----~---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+- . + +...-++++|.+.+++..+ ....++..+.+...||+.+++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEec
Confidence 21 0 1 1345678888887776655 577889988888789988887643
No 301
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.80 E-value=0.067 Score=44.93 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEccccc-C-CCCCcccEEEE-ccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--MSDHARTLVKANNLQDVVEVIEGSVED-I-VLPEKVDVIIS-EWM 153 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~--~~~~a~~~~~~~~~~~~v~~i~~d~~~-~-~~~~~~D~Ivs-e~~ 153 (391)
+++++-+|...=..-.++.++|+++|..||.++ .-+..+.++ ..+...|+.. + ...++||.+.| ..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 578899999987777778888999999999873 111111111 1122222211 1 23478998877 222
Q ss_pred cccc--------cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFL--------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~--------~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.. ...+++.. +..++++|||||.+++.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEE
Confidence 2221 12234444 56678999999998744
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.57 E-value=0.33 Score=43.29 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
..++..|||--||+|.-+.++.+.|- +.+|+|++ ..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 35789999999999999999998877 79999999 78887764
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.52 E-value=0.34 Score=48.97 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=56.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----------------
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---------------- 138 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---------------- 138 (391)
++.+||-+|+|. |..+..+++. |+ .|+++|.+ ..++.+++ .|. +++.-|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHHH
Confidence 568999999997 6777776665 77 69999999 65554443 332 332222211
Q ss_pred -------CC-CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 139 -------IV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 -------~~-~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+. .-..+|+|++-.+ .........+.++..+.+|||++++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 0156999987432 1122122234566678899999877
No 304
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.33 E-value=0.16 Score=48.43 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred EEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 82 VLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+.. + .++.+|+.++... ..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999998778899999 66555555432 2 4456788887532 4689998744
No 305
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.25 E-value=0.39 Score=44.68 Aligned_cols=95 Identities=24% Similarity=0.266 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--cccccCCCCCcccEEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~~~~~~~~~~D~Ivs 150 (391)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ .-++.+++ .|....+..-. ..+.++.....+|+++-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 34778999999875 6666667765 77669999988 55555544 34321111100 00111112246898884
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+. ...+....+.|+++|.++..
T Consensus 194 -~~G~--------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 -FSGA--------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -CCCC--------hHHHHHHHHHhcCCCEEEEe
Confidence 1111 12355556789999998744
No 306
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.20 E-value=0.32 Score=47.31 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|....+.....+. .++. ++.+|+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-~~g~d~ 262 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-GGGVDY 262 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-CCCCCE
Confidence 345678899999875 6666666765 77679999988 66666543 34321111111111 1111 236898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+-- .+. ...+....+.|+++|.++..
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEEE
Confidence 8841 111 12344555789999998743
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.80 E-value=0.35 Score=46.73 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc----cCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE----DIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~----~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+.+|+++|.+ ...+.+++ .|....+.....+.. +......+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 345678999999865 6666777776 77679999988 66666643 343211111111111 1111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+- ..+. ...+....+.|+++|+++..
T Consensus 249 vid-~~g~--------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VID-AVGR--------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEE-CCCC--------HHHHHHHHHHhccCCEEEEE
Confidence 884 2221 12344455789999998754
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.76 E-value=0.64 Score=49.08 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEechH----HH-----------HHHHHHHHH-----cC
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEATK----MS-----------DHARTLVKA-----NN 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-------g~------~~V~avD~s~----~~-----------~~a~~~~~~-----~~ 124 (391)
+.-+|||+|=|+|...+.+.+. .. -+++++|..+ -+ ..+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876555422 11 1789999631 11 112222211 12
Q ss_pred C------CC--cEEEEEcccccCC--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 125 L------QD--VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ~------~~--~v~~i~~d~~~~~--~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+ .+ .++++.+|+++.- +...+|+++.+.+...-..+---..++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 3567778887642 23579999988765433222223578999999999999887
No 309
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.69 E-value=0.58 Score=44.24 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+- ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid-~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYD-ASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEE-CCC
Confidence 467799999886 7777777775 88778888887 555544421 1 11 11110 1246898884 222
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ...++...++|+++|+++..
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEE
Confidence 1 12455666789999998843
No 310
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.53 E-value=1.6 Score=41.83 Aligned_cols=112 Identities=18% Similarity=0.039 Sum_probs=68.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcC-CC----eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAG-AR----KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------- 140 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g-~~----~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------- 140 (391)
...++.+|||+.+-.|.=+..+.++. .. .|++=|.+ .-+...+.......-. .+.+...|+..++
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence 34578999999999998776666652 22 69998988 5455555444433322 2444444433221
Q ss_pred -CC-CcccEEEEcccccc--ccCc------------------chHHHHHHHHhccccCCeEEEccccee
Q 016351 141 -LP-EKVDVIISEWMGYF--LLRE------------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 141 -~~-~~~D~Ivse~~~~~--~~~e------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.. ..||-|+|+..... .... ...-.++....++||+||.++-+.+++
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 57999999764221 1100 012346666789999999999776653
No 311
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.47 E-value=0.7 Score=43.21 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
++.+|.-||.|. |..+..+|- .|+ .|+.+|.| +-+......+. .+++.+-....++... .+.|++|.-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 346788898886 655544443 467 79999999 76655544432 4488888877777544 78999997432
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
......+..+.+++.+.+|||.+++-
T Consensus 241 ---IpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 241 ---IPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ---ecCCCCceehhHHHHHhcCCCcEEEE
Confidence 34444556667777888999998873
No 312
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.32 E-value=0.53 Score=44.98 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCCCCcccEE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~~~~~~~~D~I 148 (391)
...++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 345688999998865 5666666665 77559999988 65555543 3432111111111 1111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+--. + . ...+....+.|+++|.++.
T Consensus 236 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 236 IECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 8421 1 1 1234445577999998874
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.97 E-value=0.75 Score=44.37 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=53.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEec---h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEA---T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~---s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
.++.+||-+|+|. |.++..+|++ |+ +|++++. + .-.+.+ ++.|... +.....+..+......+|+|+-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhhhhhcCCCCEEEE
Confidence 4678999999876 7777777776 77 7999986 4 333433 3444321 1111111111111246898885
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
- .+ . ...+....+.|+++|.++..
T Consensus 245 ~-~g----~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 A-TG----V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C-cC----C----HHHHHHHHHHccCCcEEEEE
Confidence 2 11 1 12455667889999988743
No 314
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.93 E-value=1.1 Score=43.08 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+||-+|||. |.++..+++ .|+.+|+++|.+ .-++.|++ .+. ...+ .+ +.....+|+|+- .
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~-~~---~~~~~g~d~viD-~ 229 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI-DD---IPEDLAVDHAFE-C 229 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh-hh---hhhccCCcEEEE-C
Confidence 4678999999986 666666555 356689999998 66666653 111 1111 11 111124898884 2
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. . ..+..+....++|+++|+++..
T Consensus 230 ~G~----~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 230 VGG----R-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCC----C-ccHHHHHHHHHhCcCCcEEEEE
Confidence 221 0 1123456667889999998743
No 315
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.64 E-value=0.86 Score=41.84 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=42.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-C--------CCeEEEEech-HHHHHHHHHHHHc-----CCCCcEEEEEcccccCCCCC
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-G--------ARKVYAVEAT-KMSDHARTLVKAN-----NLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g--------~~~V~avD~s-~~~~~a~~~~~~~-----~~~~~v~~i~~d~~~~~~~~ 143 (391)
..+|+|+|+|+|.++.-+++. . ..+++.||.| .+.+..++.+... ....+|.++ .+..+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 368999999999998887765 1 1379999999 7777666666542 234457773 3444432
Q ss_pred cccEEEE
Q 016351 144 KVDVIIS 150 (391)
Q Consensus 144 ~~D~Ivs 150 (391)
..-+|++
T Consensus 95 ~~~~iia 101 (252)
T PF02636_consen 95 FPGFIIA 101 (252)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 3455666
No 316
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.49 E-value=3.9 Score=36.26 Aligned_cols=99 Identities=19% Similarity=0.348 Sum_probs=60.2
Q ss_pred CCCEEEEECCccc----HHHHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCCC-CcccEE
Q 016351 78 QGKTVLDVGTGSG----ILAIWSA-QA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVLP-EKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG----~l~~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~-~~~~~-~~~D~I 148 (391)
.-+.++++.|+-| .+++.+| ++ |. +++.|-.. ..+...++.+...++.+.++|+.++.. ++... ..+|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 4477888865533 3344433 33 44 67777777 666677777777888887899998853 33222 789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+. - .++....+|+.+. +.|.|-++...
T Consensus 120 vVDc---~--~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 120 VVDC---K--REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred EEeC---C--chhHHHHHHHHhc--cCCCceEEEEe
Confidence 9654 1 1222225666543 55666655443
No 317
>PLN02740 Alcohol dehydrogenase-like
Probab=90.25 E-value=1.9 Score=42.07 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=32.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.|++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 445678999999875 6666666765 77679999998 66666644
No 318
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.08 E-value=0.68 Score=44.44 Aligned_cols=96 Identities=24% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~---~~~~~~~~D~Iv 149 (391)
..++.+||-.|+|. |.++..+|++ |++.|++++.+ +..+.+++ .|....+.....+.. .+.....+|.++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 45678999999876 6666666665 77668999988 65555533 343211111111111 111124577444
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|..+. ...+....+.|+++|.++..
T Consensus 234 ~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 333321 12455566788999998744
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.08 E-value=1.7 Score=37.72 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=61.9
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--------cCCC--------CcEEEEEcccccCCC
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--------NNLQ--------DVVEVIEGSVEDIVL 141 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--------~~~~--------~~v~~i~~d~~~~~~ 141 (391)
+|.-||+|+ | .++..++.+|. +|+.+|.+ ..++.+++.++. ..+. .++++ ..|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467899987 4 46777788888 79999999 888777776654 1111 23543 3455444
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
...|+|+=.. ......-..++..+.+.+.|+.++.-+..++-..
T Consensus 77 -~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~ 120 (180)
T PF02737_consen 77 -VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSIS 120 (180)
T ss_dssp -CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH
T ss_pred -hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH
Confidence 3689888422 2222345678999999999999887665555443
No 320
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.89 E-value=0.095 Score=41.16 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred cccEEEEcccc---ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 144 KVDVIISEWMG---YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivse~~~---~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||+|+|=.+. +.-.+..-+..+++.+.++|+|||.+|...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 58999993221 111122347789999999999999999553
No 321
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.89 E-value=0.57 Score=44.89 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=51.2
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~-~~D~Ivse~ 152 (391)
.+++|+-||.|.+.+-+..+|..-+.++|++ ..++.-+.+... ..++..|+.++... . .+|+|+.-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5799999999999999999998889999999 555555544432 46677788776433 2 789999744
No 322
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.74 E-value=2.4 Score=41.87 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
.++++|+-+|+|. |.....+++. |+ +|+++|.+ .-+..|++ .|. +.+ +..+. -..+|+|+.-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~--v~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA--VKEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH--HcCCCEEEECC-
Confidence 5789999999997 7666666654 88 79999998 54444443 343 222 12221 14689998621
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ ....+-....+.+++||+++...
T Consensus 266 G-------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 G-------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 1 12222233467899999887543
No 323
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=89.33 E-value=1.2 Score=40.55 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=56.6
Q ss_pred ChHhHHHHHHHHHh-cCCCCCCCEEEEECCcc--cHH--HHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEE
Q 016351 59 DRVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGS--GIL--AIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 59 d~~r~~~~~~~i~~-~~~~~~~~~VLDlGcGt--G~l--~~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~ 131 (391)
.-..+..+.+.|.. .+....+.+||.+|+|+ |.- +..+.+.-.. .++-.|+.+.+. +.-..
T Consensus 41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS------------Da~~~ 108 (299)
T PF06460_consen 41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS------------DADQS 108 (299)
T ss_dssp HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEE
T ss_pred eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc------------ccCCc
Confidence 34556666666644 22233468999999997 322 2333333222 455555544221 22456
Q ss_pred EEcccccCCCCCcccEEEEcccc--------ccccCcchHHHHHHHHhccccCCeEEE
Q 016351 132 IEGSVEDIVLPEKVDVIISEWMG--------YFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 132 i~~d~~~~~~~~~~D~Ivse~~~--------~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+.+|.+.+..+.++|+|||+.-. .....+.-...+..-++..|+-||.+.
T Consensus 109 ~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 109 IVGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred eeccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 77899998888999999998641 112233445666677788899999876
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.27 E-value=1.3 Score=42.54 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
-..|.|+|+|-|.++.+++-. |. .|+|||.| ...+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 378999999999999887754 55 79999999 555555543
No 325
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.98 E-value=0.97 Score=43.49 Aligned_cols=74 Identities=26% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEE
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEATK----------------------MSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s~----------------------~~~~a~~~~~~~~~~~~v~~i 132 (391)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+|+.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 467778889988999998751 234444555554333336666
Q ss_pred EcccccC---CCCCcccEEEE
Q 016351 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6554321 11267999986
No 326
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.94 E-value=1.5 Score=39.84 Aligned_cols=92 Identities=28% Similarity=0.410 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---~~~~~~~D~Ivs 150 (391)
.++.+||..|+|+ |.....+++. |. +|++++.+ ...+.+++ .+....+.....+... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 5678999999996 6666666665 64 79999988 65555543 2221111111111100 111257999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. + . ........+.|+++|.++.
T Consensus 208 ~~-~----~----~~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 208 AV-G----G----PETLAQALRLLRPGGRIVV 230 (271)
T ss_pred CC-C----C----HHHHHHHHHhcccCCEEEE
Confidence 22 1 1 0234455677899998874
No 327
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.92 E-value=2.3 Score=40.21 Aligned_cols=94 Identities=29% Similarity=0.352 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---~~~~~~~D~Iv 149 (391)
..++.+||..|+|. |..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+..+ ....+.+|+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 45667888888764 7777777775 66 69999988 66666543 3432111111111100 11225789888
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... + ....+....+.|+++|.++..
T Consensus 238 d~~-g--------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFV-G--------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECC-C--------CHHHHHHHHHHhhcCCEEEEE
Confidence 521 1 123466667899999998743
No 328
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.91 E-value=1.4 Score=39.05 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
...|.-.+...-.+.+|.|-.-+ +.|.+......+.-|.+||.|.|.++..+..+|+.+...||++ ..+.-.+..
T Consensus 17 i~lYRLqA~K~LSQNfLMD~~lT----~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L 92 (326)
T KOG0821|consen 17 IKLYRLQAAKQLSQNFLMDLRLT----DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQML 92 (326)
T ss_pred HHHHHHHHHHHHhHhHHhhhHHH----HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHH
Confidence 34455545444444556555433 3355555556778899999999999999999998889999988 666555554
Q ss_pred HHHcCCCCcEEEEEcccccCC
Q 016351 120 VKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.++.. .+..+.++|+..+.
T Consensus 93 ~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 93 SEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred hhcCC--cceEEeccccceeh
Confidence 44433 34778888876653
No 329
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.87 E-value=3.3 Score=39.23 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
..+++++|-.|+++|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999998875 4555667787 79988887 555544444433221234889999987752
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
..+++|++|.+.
T Consensus 90 ~~~~iD~li~nA 101 (313)
T PRK05854 90 EGRPIHLLINNA 101 (313)
T ss_pred hCCCccEEEECC
Confidence 125689999754
No 330
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.62 E-value=1.3 Score=41.46 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=49.0
Q ss_pred EEEECCcccHHH-HH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCCCcccEEEE
Q 016351 82 VLDVGTGSGILA-IW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLPEKVDVIIS 150 (391)
Q Consensus 82 VLDlGcGtG~l~-~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--------~~~~~~D~Ivs 150 (391)
=+|||.|+..+- +. +.+.+. ...|+|+. .....|.+++.+|++.+.+.+++...... .....||++.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 379988875432 22 222243 58899999 66899999999999999899888743221 11245899999
Q ss_pred ccc
Q 016351 151 EWM 153 (391)
Q Consensus 151 e~~ 153 (391)
++.
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 773
No 331
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.11 E-value=1.5 Score=38.73 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 35677888899899999865
No 332
>PRK11524 putative methyltransferase; Provisional
Probab=88.00 E-value=0.58 Score=43.84 Aligned_cols=54 Identities=28% Similarity=0.292 Sum_probs=38.6
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc--------------CcchHHHHHHHHhccccCCeEEEcc
Q 016351 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL--------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~i~~d~~~~--~~~-~~~D~Ivse~~~~~~~--------------~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+++++|+.++ .++ +++|+|++++. |... +...+..++.++.++|||||.++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57899999885 233 78999999874 2210 0012356888999999999998764
No 333
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.93 E-value=4.6 Score=35.70 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=26.3
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999996 4 46777888898888888765
No 334
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.82 E-value=3.2 Score=38.70 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
...++.||-=|.|+|+ +++.+|+.|+ ++...|++ +......+.++++| ++.....|+.+.+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3467899999999984 6788899998 79999999 66666666666665 4888888887752
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 126899999854
No 335
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.78 E-value=2.9 Score=42.00 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.-+++|+-||.|.+++.+-++|...|.++|++ .+.+.-+.+.... + ...++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCc
Confidence 35899999999999999999998788999999 5444444443110 1 1345566776654
No 336
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.55 E-value=1.2 Score=42.76 Aligned_cols=74 Identities=31% Similarity=0.310 Sum_probs=46.4
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech----------------------HHHHHHHHHHHHcCCCCcEEEE
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT----------------------KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s----------------------~~~~~a~~~~~~~~~~~~v~~i 132 (391)
+...+||-+|||. | .++..++++|..+++.+|.+ ..++.|++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3557899999995 4 45677888899899999964 1233444444443322235566
Q ss_pred EcccccC---CCCCcccEEEE
Q 016351 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 5554331 11267999996
No 337
>PLN02827 Alcohol dehydrogenase-like
Probab=86.69 E-value=3.6 Score=40.12 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccccc-CC--CCCccc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVED-IV--LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~~~-~~--~~~~~D 146 (391)
...++.+||-.|+|. |.+++.+|++ |+..|+++|.+ ...+.|+ ..|....+.... .+... +. ..+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 345688999999875 6666666665 87679999987 6555553 345421111111 01111 10 123689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~ 182 (391)
+|+- ..+. ...+....++|+++ |.++.
T Consensus 266 ~vid-~~G~--------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFE-CVGD--------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEE-CCCC--------hHHHHHHHHhhccCCCEEEE
Confidence 8884 2221 12344455678898 98874
No 338
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.45 E-value=2.5 Score=37.71 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-------------------HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-------------------KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-------------------~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
+..+|+-+|||. | .++..+++.|..+++.+|.+ ..++.+.+++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 457899999995 4 46777888899889888865 23344445554433332355555444
Q ss_pred ccCC---CCCcccEEEE
Q 016351 137 EDIV---LPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~---~~~~~D~Ivs 150 (391)
.... +-..+|+||.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 3311 1257899985
No 339
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.36 E-value=2.6 Score=38.47 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
.++....|+|+..|.++-.+.+.+- .|++||-..|++... .. ..|+....|-..+.+ +.+.|-.||+.+.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmVE- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMVE- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehhc-
Confidence 4677899999999999999999987 799999877654332 22 238888888887766 4899999998752
Q ss_pred cccCcchHHHHHHHHhccccCC
Q 016351 156 FLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~g 177 (391)
....+-..+..+|..|
T Consensus 281 ------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 ------KPARVAALIAKWLVNG 296 (358)
T ss_pred ------CcHHHHHHHHHHHHcc
Confidence 2233444455666655
No 340
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.20 E-value=2.1 Score=38.64 Aligned_cols=73 Identities=25% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEe-------------------ch-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVE-------------------AT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD-------------------~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+.+|+-+|||. | ..+..+++.|..+++.+| +. ..++.+.+++++.+-.-+|+.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 457899999995 4 456778888998888884 33 3445555555554432236666555
Q ss_pred cccCC---CCCcccEEEE
Q 016351 136 VEDIV---LPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~---~~~~~D~Ivs 150 (391)
+..-. +-..+|+||+
T Consensus 100 i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 100 LDAENAEELIAGYDLVLD 117 (228)
T ss_pred eCHHHHHHHHhCCCEEEE
Confidence 42211 1256999997
No 341
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.17 E-value=4.3 Score=38.58 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCC-CCcccEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVL-PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~~~~-~~~~D~Iv 149 (391)
.++.+||..|||. |..+..++++ |..+|++++.+ ...+.+++ .+.. .++..+ ...+.. .+.+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 3778899998875 5666666665 77579999988 65554433 2332 222211 112211 24589998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... + . ...+....+.|+++|.++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 521 1 0 1234556688899999874
No 342
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.11 E-value=1.3 Score=42.41 Aligned_cols=95 Identities=26% Similarity=0.354 Sum_probs=54.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |..+..+|++ |+.+|++++.+ ...+.+++ .|....+.....+. ..+.....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 345678899888774 5666666666 77679999988 55555543 44321111111111 11111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++... + . ...+....+.|+++|.++-
T Consensus 239 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 239 VIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88511 1 1 1245566677899998873
No 343
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.09 E-value=2.1 Score=40.75 Aligned_cols=45 Identities=33% Similarity=0.456 Sum_probs=36.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+..++..|.-+|||. |+.++.-|+. |+.+++|||++ ..+++|++.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 345678999999987 7777776664 99999999999 778887764
No 344
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.05 E-value=1.9 Score=40.56 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..++.+|.-.|+|. |+..++-+++ ||++++|||++ +-.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 44678899999987 6666666665 99999999999 777777653
No 345
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.80 E-value=2.4 Score=40.95 Aligned_cols=108 Identities=21% Similarity=0.175 Sum_probs=68.3
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHH-------HHHHcCC-CCcEEEEEcccccCCC
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHART-------LVKANNL-QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~-------~~~~~~~-~~~v~~i~~d~~~~~~ 141 (391)
+.+...++..-.|+|.|.|.+..+++.. +.+.-+|+|+. ...+.|.. ..+..|- .+.++.+++++.+...
T Consensus 186 dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 186 DELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKR 265 (419)
T ss_pred HHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHH
Confidence 3345567789999999999987766654 56677888876 43343332 2233343 4568999998877432
Q ss_pred ----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 ----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....++|+++.+ ...+ .+..=+..+..-+++|.++|-.
T Consensus 266 v~eI~~eatvi~vNN~---~Fdp-~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNV---AFDP-ELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHhhcceEEEEecc---cCCH-HHHHhhHHHHhhCCCcceEecc
Confidence 257899997543 2222 2222234566667899888833
No 346
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.74 E-value=5.1 Score=38.18 Aligned_cols=88 Identities=20% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS- 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs- 150 (391)
...++.+||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.|++ .|... ++. ..+. ..+.+|+++-
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEEC
Confidence 445678999999864 5555666665 77 69999988 55555544 44432 111 1111 1245786653
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. ...+....+.|+++|.++..
T Consensus 231 ~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 231 APA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 111 12455566789999998753
No 347
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=3.4 Score=39.62 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=34.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC---------CCeEEEEech-HHHHHHHHHHHHc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG---------ARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g---------~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
....+++||+|+|.++..+++.. +.++..||.| ...+.-+++.+..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34689999999999977665542 4489999999 7666666666543
No 348
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.63 E-value=1.7 Score=42.35 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~ 153 (391)
++.+|+-+|+|. |..+...++ .|+ +|+++|.+ ..++.+.... +. .+.....+..++. .-..+|+||+-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHHHHHHHccCCEEEEccc
Confidence 557799999985 665555554 487 69999998 5444332221 11 1222111212221 1157899997321
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... .. ....+-....+.++++++++-
T Consensus 240 ~~g--~~-~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 240 IPG--AK-APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred cCC--CC-CCcCcCHHHHhcCCCCCEEEE
Confidence 000 00 011112333355788887763
No 349
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.40 E-value=3.5 Score=37.98 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC------CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG------ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g------~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.++..++|+|||.|.|+.++++.- ...++.||....-..+...+........++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 456789999999999999988863 23789999862212343444443321237777888888764
No 350
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.11 E-value=1.5 Score=38.08 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCCCCCC-CEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccc
Q 016351 61 VRMDAYFNSIFQNKHHFQG-KTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSV 136 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~-~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~i~~d~ 136 (391)
.|...+.+.+...+...++ ..|+.||||-=.....+... +..+++=+|..++++.-++.++..+.. ...+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 4555555555555433344 48999999987777777664 233566666666777777776665321 2246788898
Q ss_pred ccCC---------C-CCcccEEEEccccccccCcchHHHHHHH
Q 016351 137 EDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICA 169 (391)
Q Consensus 137 ~~~~---------~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~ 169 (391)
.+.. + +...-++++|.+...+..+ ....++..
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHH
Confidence 7631 1 2556688888876666544 34455544
No 351
>PRK13699 putative methylase; Provisional
Probab=85.06 E-value=0.83 Score=41.30 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc----------Cc---chHHHHHHHHhccccCCeEEEc
Q 016351 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL----------RE---SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~i~~d~~~~--~~~-~~~D~Ivse~~~~~~~----------~e---~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++++++|+.++ .++ +++|+|+.++. |... .. .-+...+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46888998875 455 89999999874 3211 00 1245678889999999998764
No 352
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=84.99 E-value=1.7 Score=42.10 Aligned_cols=90 Identities=23% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-------ccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-------EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-------~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.+++.+|++ |+.+|++++.+ ...+.+++ .+.. .++..+- ..+. ...+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~~ 255 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCCC
Confidence 44678898888765 6666667775 88779999988 55555443 3321 2222111 1112 3568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+|+... + . ...+....+.|+++|.++.
T Consensus 256 d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 256 DYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred cEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 9888521 1 1 1234556677899998874
No 353
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.47 E-value=5 Score=35.00 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=69.9
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC-CCeEEEEech-HHHH-HHHHHHHHcCCCCcE
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----AG-ARKVYAVEAT-KMSD-HARTLVKANNLQDVV 129 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~----~g-~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v 129 (391)
++.....-.|++.|-+ .++..|++.|.--|..+++.|. .| ..+|.++|++ .-++ .|++ . ..|
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-p~i 120 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-PDI 120 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-CCe
Confidence 4445555566655544 3567899999988876666554 35 2379999999 5443 3332 1 349
Q ss_pred EEEEcccccCCC-------C-CcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 130 EVIEGSVEDIVL-------P-EKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 130 ~~i~~d~~~~~~-------~-~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.|++++..+... . +.--+.+| +..+ ..+..+ ..++...++|.-|-+++.....+-
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdH---s~~hvL-Ael~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDH---SMEHVL-AELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCc---hHHHHH-HHHHHhhhHhhcCceEEEeccccc
Confidence 999999888632 1 22233344 2221 112222 346667788888988876555433
No 354
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.26 E-value=3.7 Score=36.20 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+.+||-+|||. | ..+..++..|.++++.+|.. + .++.+++.+++.+-.-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999996 3 34666788899899998854 1 133444445444333235555554
Q ss_pred cccCC--CCCcccEEEEc
Q 016351 136 VEDIV--LPEKVDVIISE 151 (391)
Q Consensus 136 ~~~~~--~~~~~D~Ivse 151 (391)
+.+.. +-..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 43321 12689999973
No 355
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=83.99 E-value=4.8 Score=38.63 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------C--C-------CeEEEEech--HHHHHHHHHHHH----cCCCC-cEEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--------G--A-------RKVYAVEAT--KMSDHARTLVKA----NNLQD-VVEVIE 133 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--------g--~-------~~V~avD~s--~~~~~a~~~~~~----~~~~~-~v~~i~ 133 (391)
+.-+|+|+||.+|..++.+... . . -+|+--|.- +.-...+..-.. ....+ =+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3468999999999887765432 0 0 157777753 333332221111 00111 023334
Q ss_pred cccccCCCC-CcccEEEEcccccccc-------C-----------------------------cchHHHHHHHHhccccC
Q 016351 134 GSVEDIVLP-EKVDVIISEWMGYFLL-------R-----------------------------ESMFDSVICARDRWLKP 176 (391)
Q Consensus 134 ~d~~~~~~~-~~~D~Ivse~~~~~~~-------~-----------------------------e~~l~~~l~~~~~~L~~ 176 (391)
+.+-.--+| ++.|+++|-.-.+.+. . ..++..+|+.+.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 444443344 8899999832111111 0 12567788888899999
Q ss_pred CeEEEcc
Q 016351 177 TGVMYPS 183 (391)
Q Consensus 177 gG~ii~~ 183 (391)
||+++..
T Consensus 176 GG~mvl~ 182 (334)
T PF03492_consen 176 GGRMVLT 182 (334)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 9999854
No 356
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.97 E-value=6.7 Score=36.71 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN----------NL---------QDVVEVIEGSVE 137 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~----------~~---------~~~v~~i~~d~~ 137 (391)
++|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688999996 4 46677777887 79999999 7777665543321 11 0112221 1221
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. -...|+|+.-. .........++..+.+.++++.+++
T Consensus 82 ~---~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 15689888532 1121234667777888888888765
No 357
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.75 E-value=7.5 Score=37.97 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=63.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEccccccccC
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~-v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~ 159 (391)
.||-++-.-|.|+..++..+...+ .|.--.-...+++.+.|++... ++++. ..+ ++++.+|+|+.-+. -.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~-~~~~~~d~vl~~~P----K~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLD--STA-DYPQQPGVVLIKVP----KT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeec--ccc-cccCCCCEEEEEeC----CC
Confidence 699999999999999996654211 2322233456788999998643 55543 222 34677999986432 22
Q ss_pred cchHHHHHHHHhccccCCeEEE
Q 016351 160 ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 160 e~~l~~~l~~~~~~L~~gG~ii 181 (391)
...+...+..+...|.||+.+|
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEE
Confidence 2356778888899999999977
No 358
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.73 E-value=5.2 Score=37.43 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=56.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---C-----CC--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---N-----LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---~-----~~--------~~v~~i~~d~~~~~ 140 (391)
++|.-||+|. +.++..++++|. +|+.+|.+ +.++.+.+..... + +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 345666777787 69999999 7777665432211 1 00 012222 222211
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
-...|+|+.-.. ........++..+.+.++++.++..+..+
T Consensus 79 -~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 156899985321 11122345667777888888766554444
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.61 E-value=6.7 Score=31.11 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=44.5
Q ss_pred CEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEE
Q 016351 80 KTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivs 150 (391)
.+|.++|-|.=. .+..+++.|. .|+++|+++. ++. ..++++..|+.+.... +..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 479999998743 4677888887 5999999932 111 2289999999886554 78999998
No 360
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.46 E-value=8.2 Score=37.09 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=52.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCCccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-------~~~~~~~~~~D 146 (391)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ .....++ ..|....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3678888888764 5555556665 77679999887 5444443 34442211111111 11111125689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.- .+. ...+....+.|+++|.++..
T Consensus 252 ~vid~-~g~--------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEA-SGH--------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEEC-CCC--------hHHHHHHHHHhccCCEEEEE
Confidence 98852 111 12344556788999998743
No 361
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.29 E-value=11 Score=31.19 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.+.+++...-...++++|+-+|||. | .++..+++.|...|+.+|.+ +..+...+...... +.....+..+.
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 78 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--
Confidence 3445555543335678999999974 2 23334444554579999988 54443333222111 11122233222
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+.+|+|++-.
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999843
No 362
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=83.19 E-value=7.9 Score=37.14 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 345678999999976 6777777776 77 69999988 66666643
No 363
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=82.64 E-value=2.7 Score=41.33 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc----ccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~---d~----~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.++..+|++ |++.|+++|.+ .-++.|++ .|.. .+... +. .++.....+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCCC
Confidence 45677888888875 6666667765 88667777887 55666554 3432 12211 11 111112468
Q ss_pred cEEEEccccccc------cCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~------~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+++- ..+.-. ..+......+....++++++|.++.
T Consensus 256 Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 256 DCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 98885 122110 0001122356666789999999875
No 364
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.60 E-value=7.7 Score=36.27 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=56.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC---------CcEEEEEcccccC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ---------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~---------~~v~~i~~d~~~~ 139 (391)
.+|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.++.. .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 2 35566777777 79999999 7777766543211 111 123322 233221
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-...|+|+.-.. ........++..+...++++.++...
T Consensus 82 --~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 --VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 156898886321 11123456677777778777765433
No 365
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.08 E-value=0.33 Score=39.22 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=51.3
Q ss_pred cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCcccEEEEcccccccc
Q 016351 88 GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 88 GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~~~D~Ivse~~~~~~~ 158 (391)
|.|.++..+|++ | .+|+++|.+ .-++.+++ .|.. .++..+-.+ +.....+|+|+-- .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEe-cC----
Confidence 468888888887 7 589999999 66665543 4422 333332221 1112479999841 11
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
. ...++....+|+++|.++.....
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEESST
T ss_pred c----HHHHHHHHHHhccCCEEEEEEcc
Confidence 1 24566777889999998855443
No 366
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.02 E-value=8.1 Score=36.87 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=56.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHH-------HcCCC-----CcEEEEEcccccCCCCCc
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK-------ANNLQ-----DVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~-------~~~~~-----~~v~~i~~d~~~~~~~~~ 144 (391)
++|--||+|+ | .++..++.+|. +|+..|.+ +.++.+++.++ +.++. .++++.. +..+. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcC
Confidence 6789999996 3 46677788888 79999999 66665544332 12221 1233221 22211 157
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.|+|+-.. ......-..++..+.+.++|+.++-
T Consensus 84 aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 84 ADFIQESA----PEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 89888532 2222334577888888999988443
No 367
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.99 E-value=5.4 Score=34.33 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s 110 (391)
+|+-+|||. |. .+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 488999995 54 5777888899889888865
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.96 E-value=6.4 Score=36.85 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCCC---------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNLQ---------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~~---------~~v~~i~~d~~~~~ 140 (391)
.+|--||+|+ +.++..++++|. .|+.+|.+ +.++.+++.+.. .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 346677788888 79999999 777776555332 1110 11222 2333222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L-~~gG~ii~~~~~ 186 (391)
...|+|+-.. ......-..++..+.+.+ +|+.++.-+..+
T Consensus 83 --~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 --ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5789988532 222233456777778887 777766544433
No 369
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.83 E-value=3.4 Score=39.61 Aligned_cols=96 Identities=25% Similarity=0.286 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|+. |+.+|++++.+ +..+.+++ .|....+.....+. .+....+.+|+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 345678888888753 4555555555 77679999887 66665543 24321111111111 11111135899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++-.. +. ...+....+.|+++|.++..
T Consensus 245 vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCA-GV--------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEECC-CC--------HHHHHHHHHhccCCCEEEEE
Confidence 98521 10 12355566789999988743
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.76 E-value=11 Score=35.18 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=58.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------CC-C--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------NL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~~-~--------~~v~~i~~d~~~~~ 140 (391)
++|.-||+|. | .++..++++|. .|+.+|.+ +.++.+.+.+..+ +. . .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 5688899996 3 45666777787 79999999 7766654433221 21 1 113322 233222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
...|+|+.-. .........++..+...++++.+++-...+
T Consensus 82 --~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5789888522 111123456677788889999877644443
No 371
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.75 E-value=8.3 Score=35.02 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=49.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+..|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++..|+.+...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457889999987764 4555667788 69999988 6555555544442223458888988876420
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
-+++|.+|..
T Consensus 84 ~g~id~li~~ 93 (260)
T PRK07063 84 FGPLDVLVNN 93 (260)
T ss_pred hCCCcEEEEC
Confidence 1468988874
No 372
>PRK06197 short chain dehydrogenase; Provisional
Probab=81.56 E-value=12 Score=35.08 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..++++||-.|+..|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++..|+.+...
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4567899999976654 3444566687 68888877 5444444333322112348889999877520
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 14689998754
No 373
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.51 E-value=14 Score=34.27 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=58.1
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHH-------HHHcCC-C--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTL-------VKANNL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~-------~~~~~~-~--------~~v~~i~~d~~~~~ 140 (391)
.+|--||+|. +.++..+++.|. +|+++|.+ +.++.+++. +.+.+. . .++++. .|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~-- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD-- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3578899986 456777788887 79999999 766554432 222331 1 123322 23222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
-+..|+|+--. .........++..+.+.++++.++......
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 25689888522 111112347788888889999877554444
No 374
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.46 E-value=6.1 Score=32.00 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-- 142 (391)
+.+.|.+.. ...+|+++|-|.=. .+..++++|. .|+++|+++. .+. .| +.++..|+.+-.+.
T Consensus 4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHH
T ss_pred HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHh
Confidence 444555432 33589999999843 5677788897 7999999942 222 22 78889999885544
Q ss_pred CcccEEEE
Q 016351 143 EKVDVIIS 150 (391)
Q Consensus 143 ~~~D~Ivs 150 (391)
+..|+|.|
T Consensus 69 ~~a~lIYS 76 (127)
T PF03686_consen 69 EGADLIYS 76 (127)
T ss_dssp TTEEEEEE
T ss_pred cCCcEEEE
Confidence 78999998
No 375
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.28 E-value=30 Score=31.57 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHH-HHHHHHHc-CCCCcEEEEEcccccC--CCCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDH-ARTLVKAN-NLQDVVEVIEGSVEDI--VLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~-a~~~~~~~-~~~~~v~~i~~d~~~~--~~~~~~D 146 (391)
...+..+|+|+|+..-+..+.++ | ..+.+.||++ ..+.. |+.+.... ++. |.-+.+|...- .+++.--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcccCCCe
Confidence 34689999999998666555544 3 2478999999 76654 44444432 333 66677776542 2232222
Q ss_pred EEEE---ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIIS---EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs---e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-+++ ..++.+... ....++..++..|+||-.++.-
T Consensus 155 Rl~~flGStlGN~tp~--e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPG--ECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChH--HHHHHHHHHHhcCCCcceEEEe
Confidence 2222 233443332 3567899999999999887754
No 376
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.94 E-value=7.1 Score=37.77 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEEc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-~d~~~~~-~~~~~D~Ivse 151 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.... .++..|.. .++. .+...+. ..+.+|+++-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~---~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDE---AINRLGAD---SFLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhh---HHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEE-
Confidence 4678888899875 6777777776 77 68888877 43221 22234432 1221 1111110 1135888884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+ . ...+....+.|+++|.++..
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEe
Confidence 222 1 12345566789999998743
No 377
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.70 E-value=11 Score=36.02 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
.++++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.++..+. ++.++..|+.+.. .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456899999997764 4555677788 69999988 666655555555443 3778888886631 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|++|.+.
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 15789999854
No 378
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=80.37 E-value=3.6 Score=39.19 Aligned_cols=94 Identities=23% Similarity=0.422 Sum_probs=51.9
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~I 148 (391)
..++.+||..|+|. |..++.+|++ |..+|++++.+ ...+.+++ .+....+.....+. ..+...+.+|++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 34567888887753 6666666665 65578899777 55554443 23211111111111 111122568988
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.. .+. ...+....+.|+++|.++.
T Consensus 241 ld~-~g~--------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 241 IEA-VGF--------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEc-cCC--------HHHHHHHHHHhhcCCEEEE
Confidence 852 111 1245556678899998873
No 379
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.21 E-value=5.3 Score=38.70 Aligned_cols=95 Identities=21% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccc----ccCCCCCc
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSV----EDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~----~~~~~~~~ 144 (391)
....++.+||-.|+|. |.++..+|++ |+.+|+++|.+ ..++.|++ .|....+.... .+. .++. .+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~g 255 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-DGG 255 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-CCC
Confidence 3445678999999875 6667767776 77679999998 66666644 34322121111 011 1111 136
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~ 182 (391)
+|+++-- .+. ...+....+.++++ |.++.
T Consensus 256 ~d~vid~-~G~--------~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 256 VDYSFEC-IGN--------VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCEEEEC-CCC--------HHHHHHHHHHhhcCCCeEEE
Confidence 8888841 111 12344455678886 87763
No 380
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.03 E-value=8.2 Score=31.77 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=41.5
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+||-+|||. |. ++..+++.|..+++.+|.+ ..++.+++.+++.+-.-+++.+......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 478899984 43 5677888898888888743 2233344444443322235555544433
Q ss_pred C---CCCCcccEEEE
Q 016351 139 I---VLPEKVDVIIS 150 (391)
Q Consensus 139 ~---~~~~~~D~Ivs 150 (391)
. .+-.++|+|++
T Consensus 81 ~~~~~~~~~~diVi~ 95 (143)
T cd01483 81 DNLDDFLDGVDLVID 95 (143)
T ss_pred hhHHHHhcCCCEEEE
Confidence 2 12268999997
No 381
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.99 E-value=7.3 Score=33.93 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=48.5
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHH------------HHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHART------------LVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~------------~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+|--+|.|- | .++..+|+.|. +|+|+|++ ..++..++ .++++.-..+..+. .|..+. ....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--hhcc
Confidence 466778886 5 35677888888 79999999 65544331 11111001122222 222221 1457
Q ss_pred cEEEE-ccccccccCc---chHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIIS-EWMGYFLLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs-e~~~~~~~~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+++. -+....-... ..+...++.+.+.|+++.+++..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 87764 2211111211 23566777888888997776644
No 382
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.82 E-value=6.4 Score=35.98 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=44.2
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEc
Q 016351 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
..+.+||-+|||. |. .+..+++.|..+++.+|.+ + .++.|++++++.+-.-+|+.+..
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 3568899999984 43 5677888898888888754 2 22333444444332223555554
Q ss_pred ccccCC---CCCcccEEEE
Q 016351 135 SVEDIV---LPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~~---~~~~~D~Ivs 150 (391)
.+.+.. +-..+|+||.
T Consensus 110 ~i~~~~~~~~~~~~DiVi~ 128 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLD 128 (245)
T ss_pred cCCHHHHHHHHhcCCEEEe
Confidence 443311 1157999996
No 383
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=79.63 E-value=6.7 Score=32.14 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=43.2
Q ss_pred CCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE
Q 016351 76 HFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivs 150 (391)
..++++||-||+|- |. ....+++.|+++|+.+..+ +-++...+.+ + ...++++..+ ++. ...++|+||+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~-~~~~~~~~~~--~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---G-GVNIEAIPLE--DLEEALQEADIVIN 81 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---T-GCSEEEEEGG--GHCHHHHTESEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---C-ccccceeeHH--HHHHHHhhCCeEEE
Confidence 46789999999985 33 3445666699889999988 5433333333 1 1125665443 332 1268999997
No 384
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.40 E-value=7.8 Score=33.11 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=58.7
Q ss_pred EECCcccHHHHHHHHc-C-CCeEEEEech---HHHHH---HHHHHHHcCCCCcEEEEE-cccccCC--C---CCcccEEE
Q 016351 84 DVGTGSGILAIWSAQA-G-ARKVYAVEAT---KMSDH---ARTLVKANNLQDVVEVIE-GSVEDIV--L---PEKVDVII 149 (391)
Q Consensus 84 DlGcGtG~l~~~~a~~-g-~~~V~avD~s---~~~~~---a~~~~~~~~~~~~v~~i~-~d~~~~~--~---~~~~D~Iv 149 (391)
-||-|.=.++..++++ + ...++|.-.. ...+. +..+++...-.+ ++++. .|+..+. . .++||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEE
Confidence 3566666677888876 4 5567765443 22222 334444432222 34333 4666653 1 27899999
Q ss_pred Eccccccc----------cCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFL----------LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~----------~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
-+...... .+...+..++..+.++|+++|.+.+..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 76533321 112346788889999999999887653
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.07 E-value=9.4 Score=36.07 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=54.0
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCCCcccEEEEcc
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.+|+-+|+|. |.++..++++|. .|+.++.+ +.++..++ .+|+. .....+..........+.+|+|+.-.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4689999997 567888888887 69999987 54443332 22321 00011110011111125789888522
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
=.+ .+...+..+..++.++..+++.
T Consensus 79 K~~------~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 79 KAY------DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CHH------hHHHHHHHHHhhCCCCCEEEEE
Confidence 111 2456677788888888877654
No 386
>PRK08589 short chain dehydrogenase; Validated
Probab=78.94 E-value=15 Score=33.65 Aligned_cols=73 Identities=26% Similarity=0.305 Sum_probs=47.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++.++...+.++..+ .++.++..|+.+.. ..
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467899999998764 4555667787 7999988832333333333332 34788888887642 11
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
++.|++|.+.
T Consensus 81 g~id~li~~A 90 (272)
T PRK08589 81 GRVDVLFNNA 90 (272)
T ss_pred CCcCEEEECC
Confidence 4689998754
No 387
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=78.91 E-value=5.8 Score=37.94 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=51.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----C--CCCCcccEE
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----I--VLPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~--~~~~~~D~I 148 (391)
++.+||-.|+|. |.++..+|++ |+++|++++.+ ...+.+++ .|.. .++..+..+ + ..++.+|++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcEE
Confidence 568888888764 5556666665 87789999887 65555532 3432 222221111 1 011368888
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+... +. ...+....+.|+++|.++.
T Consensus 248 id~~-g~--------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 248 IDFV-NN--------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EECC-CC--------HHHHHHHHHHhhcCCeEEE
Confidence 8521 10 1235556678899998874
No 388
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.54 E-value=20 Score=33.52 Aligned_cols=89 Identities=13% Similarity=0.177 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHH---HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-CCCcEEEEEccc
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL---AIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-LQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l---~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-~~~~v~~i~~d~ 136 (391)
....+.+.+.+.....+++++|-+|+| |.- +..+++.|+++|+.++.+ ...+.+++.++... ....+.+...|.
T Consensus 109 D~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~ 187 (289)
T PRK12548 109 DGLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDL 187 (289)
T ss_pred CHHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEech
Confidence 345566666554334567899999997 532 233456788789999887 32333333332211 001133444454
Q ss_pred ccCC----CCCcccEEEEc
Q 016351 137 EDIV----LPEKVDVIISE 151 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivse 151 (391)
.+.. .-..+|+||..
T Consensus 188 ~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 188 NDTEKLKAEIASSDILVNA 206 (289)
T ss_pred hhhhHHHhhhccCCEEEEe
Confidence 4321 11467999873
No 389
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.50 E-value=6.6 Score=37.01 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSV 136 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~i~~d~ 136 (391)
..|...+-+.+...+... -..|+-||||-=.-+--+-. +. .+|+=||.-++++.=++.++..+. +..++++..|+
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 345555556666655433 47899999984322211111 22 256666666777777777776653 23589999999
Q ss_pred ccCCC----------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 137 EDIVL----------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~~~----------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++-.. +...-++++|.+..++..+ ....++..+..++.||-.++...
T Consensus 153 ~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~-~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 153 REDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEE-AVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cccchHHHHHhcCCCcCCCeEEEeccccccCCHH-HHHHHHHHHHHhCCCCceEEEec
Confidence 85321 2455678888887777655 46788999988888887776554
No 390
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.26 E-value=13 Score=34.37 Aligned_cols=73 Identities=25% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++.++..|+.+..-
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999988764 4555667788 69999988 555544444443332 37888889876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 14689988744
No 391
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.18 E-value=12 Score=34.18 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------~ 142 (391)
++++++|-.|++.|+ ++..+++.|+ +|+.++.+ .-++.+.+.++... ..++.++..|+.+..- -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 467899999998874 4566777788 69999988 55554444443321 2248888888877420 1
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|+++.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4689888743
No 392
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.00 E-value=7 Score=37.25 Aligned_cols=96 Identities=27% Similarity=0.322 Sum_probs=53.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-------~~~~~~~~ 143 (391)
....++.+||-.|+|. |..+..+|+. |++.|++++.+ ...+.+++. +....+.....+ +.+....+
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCC
Confidence 3455678888888765 5666666665 77558898877 655555432 332111111111 11121124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+|+|+... + . ...+....+.|+++|.++.
T Consensus 234 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 234 GPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 1 1 1234555678899998873
No 393
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.92 E-value=7.3 Score=37.74 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
+.+.+||-+|||. | ..+..+++.|.++++.+|.+ ..++.|++++++.+-.-+|+.+..
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3557899999995 4 35677888898888887753 233445555555443333555554
Q ss_pred ccccC---CCCCcccEEEE
Q 016351 135 SVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~---~~~~~~D~Ivs 150 (391)
.+..- .+-..+|+|+.
T Consensus 106 ~i~~~~~~~~~~~~DvVvd 124 (355)
T PRK05597 106 RLTWSNALDELRDADVILD 124 (355)
T ss_pred ecCHHHHHHHHhCCCEEEE
Confidence 44321 12267999996
No 394
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=77.85 E-value=7 Score=37.77 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=52.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--cc----ccCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SV----EDIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~--d~----~~~~~~~~~ 145 (391)
...++.+||-.|+|. |.++..+|++ |+..|++++.+ ...+.+++ .|....+..-.. +. .++. ++.+
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-~~~~ 254 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-DGGV 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-CCCC
Confidence 345678888888764 5555556665 77678899877 65555533 333211211111 11 1111 3568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhcccc-CCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLK-PTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~-~gG~ii~ 182 (391)
|+++. ..+. ...+....+.|+ ++|.++.
T Consensus 255 d~vid-~~g~--------~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 255 DYAFE-VIGS--------ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred cEEEE-CCCC--------HHHHHHHHHHhccCCCEEEE
Confidence 98884 2111 123444556678 9998874
No 395
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.83 E-value=10 Score=29.71 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=45.7
Q ss_pred EEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEEcc
Q 016351 82 VLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISEW 152 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~-~~~D~Ivse~ 152 (391)
|+-+|+| .++..+++. +...|+.+|.+ +.++.+++ .+ +.++.+|..+.. .. +++|.+++-.
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEcc
Confidence 3455665 444444432 33479999999 65554443 22 689999988752 22 6889888622
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
- .......+....+-+.|...++
T Consensus 71 ~------~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 D------DDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp S------SHHHHHHHHHHHHHHTTTSEEE
T ss_pred C------CHHHHHHHHHHHHHHCCCCeEE
Confidence 1 1112222333345566766555
No 396
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.82 E-value=17 Score=36.19 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..+++|+-+|+|. |......++ .|+ +|+.+|.+ .....+. ..|. ++. ++.+. -+.+|+|+.-.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~----~v~--~l~ea--l~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF----RVM--TMEEA--AELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC----Eec--CHHHH--HhCCCEEEECC-
Confidence 4789999999997 544444444 477 79999998 4322221 1232 222 23332 14689998621
Q ss_pred cccccCcchHHHHHH-HHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~-~~~~~L~~gG~ii~~ 183 (391)
+ .. .++. .....+|+|++++..
T Consensus 276 G-------~~-~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 276 G-------NK-DVITAEHMEAMKDGAILANI 298 (425)
T ss_pred C-------CH-HHHHHHHHhcCCCCCEEEEc
Confidence 1 11 2333 456778999987743
No 397
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=77.77 E-value=18 Score=35.65 Aligned_cols=85 Identities=25% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s~-~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..+++|+-+|+|. |......++. |+ +|+++|.++ ....|+ ..|. .+. ++.+. -...|+||+-.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l~~aDVVItaT- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--AKIGDIFITAT- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--HhcCCEEEECC-
Confidence 5789999999997 6655555554 77 799999883 222222 2232 222 22222 14679988621
Q ss_pred cccccCcchHHHHHH-HHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~-~~~~~L~~gG~ii~~ 183 (391)
+ . ..++. .....+|+|++++..
T Consensus 259 G-------~-~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 259 G-------N-KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred C-------C-HHHHHHHHHhcCCCCcEEEEE
Confidence 1 1 22333 356788999988754
No 398
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.71 E-value=9.9 Score=32.35 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~ 140 (391)
.+.+.+.+.+.. ....+|+-|||=|-...+.-......+++..|.+ ... .. .+. .|+.=|.... .
T Consensus 12 ~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~--~~~-~F~fyD~~~p~~ 78 (162)
T PF10237_consen 12 AEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QF--GGD-EFVFYDYNEPEE 78 (162)
T ss_pred HHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hc--CCc-ceEECCCCChhh
Confidence 344445555532 3457899999977444333311234479999988 432 21 111 3444454432 1
Q ss_pred ----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 141 ----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+++|+||+|+.- ..+.++..+...++.++++++.+|...+
T Consensus 79 ~~~~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 79 LPEELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhhhcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 23799999999843 4455666777777778888888875544
No 399
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.69 E-value=16 Score=34.37 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCCCCEEEEECCcc-cHHHHH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEc
Q 016351 76 HFQGKTVLDVGTGS-GILAIW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse 151 (391)
...+++|+-||+|. |..... +.+.|+ +|+++|.+ .....+ +..+. +++. ..++. .-..+|+||.-
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~----~~~G~----~~~~--~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI----TEMGL----SPFH--LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH----HHcCC----eeec--HHHHHHHhCCCCEEEEC
Confidence 34679999999986 433333 334477 89999998 533333 33332 3221 11211 11579999973
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
. .. ..+-......++|+++++-
T Consensus 218 ~-p~--------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 218 I-PA--------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred C-Ch--------hhhhHHHHHcCCCCcEEEE
Confidence 2 11 1122344466788887773
No 400
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.29 E-value=7.4 Score=36.99 Aligned_cols=93 Identities=26% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d------~~~~~~~~~~ 145 (391)
...++.+||..|+|. |..+..+|++ |...|++++.+ ...+.++ ..+.. .++..+ +........+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGAD---DTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCC---EEecCccccHHHHHHHhCCCCC
Confidence 345677888888765 5566666665 76459999877 5554443 23332 222211 1112112459
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+++... + . ...+....+.|+++|.++..
T Consensus 229 d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 229 DLVIEAA-G----S----PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 9998521 1 1 12345566788999987743
No 401
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.81 E-value=14 Score=33.88 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------CCc
Q 016351 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------PEK 144 (391)
Q Consensus 79 ~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------~~~ 144 (391)
++++|-.|+..|+ ++..+++.|+ +|++++.+ +.++...+.....+...++.++.+|+.+... -++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4678999976653 3444566687 69999877 5444444444444444568999999877421 035
Q ss_pred ccEEEEc
Q 016351 145 VDVIISE 151 (391)
Q Consensus 145 ~D~Ivse 151 (391)
+|.|+..
T Consensus 82 id~vv~~ 88 (280)
T PRK06914 82 IDLLVNN 88 (280)
T ss_pred eeEEEEC
Confidence 7888874
No 402
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.80 E-value=13 Score=33.55 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++..|+.+..-
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999998764 4555677788 69999988 65555555454433 347888888766420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14789988743
No 403
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.56 E-value=7.4 Score=36.95 Aligned_cols=94 Identities=28% Similarity=0.335 Sum_probs=53.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||..|+|. |..+..+|+. |. +|+++..+ +..+.+++ .+....+.....+. ........+|+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence 345678899998764 6666666766 76 69988777 65555533 23221111111111 11111246899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++... + . ...+..+.+.|+++|.++.
T Consensus 231 vld~~-g----~----~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 231 VIDAT-G----N----PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred EEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 98621 1 1 1234556678899998773
No 404
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=76.50 E-value=6.8 Score=38.21 Aligned_cols=96 Identities=24% Similarity=0.222 Sum_probs=52.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---c----cccCCCCCc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---S----VEDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~---d----~~~~~~~~~ 144 (391)
...++.+||-.|+|. |..++.+|++ |+.+|++++.+ ...+.+ +..|....+..... + +.++.....
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~----~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLA----KEMGADYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcCCCEEEcccccccccHHHHHHHhcCCCC
Confidence 345678888888765 5555556665 77679999887 533333 33444221111110 1 111222246
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+|+.. .+ . ....+....+.|+++|+++.
T Consensus 276 vDvvld~-~g----~---~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 276 ADIQVEA-AG----A---PPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCEEEEC-CC----C---cHHHHHHHHHHHHcCCEEEE
Confidence 8988852 11 1 11234555677899999874
No 405
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.45 E-value=12 Score=39.87 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=64.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CC--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~i~~d~~~~~ 140 (391)
++|--||+|+ +.++..+|.+|. .|+.+|.+ +.++.+++.+..+ + +. .+|++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 356777888898 79999999 8877766555421 1 11 123332 122111
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
...|+||=.. ......-..++.++.+.++|+.++--+..++-.
T Consensus 391 --~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 391 --DNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred --cCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 5789888422 222234568899999999999877655444433
No 406
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.32 E-value=7.2 Score=36.84 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred CCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC---CCCCcc
Q 016351 74 KHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI---VLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~---~~~~~~ 145 (391)
....++.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.++ ..|....+..... +..+. ..++.+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCCCCe
Confidence 34457789999985 347777777776 77 79999887 5555553 3454221111111 11110 112468
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+|+. .++. ..+....+.|+++|.++.
T Consensus 209 dvv~d-~~G~---------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 209 DCYFD-NVGG---------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred EEEEE-CCCH---------HHHHHHHHHhCcCcEEEE
Confidence 98884 2221 123455678999999884
No 407
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.32 E-value=11 Score=35.51 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=43.9
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+||-+|||. | .++..++..|.++++.+|.+ ..++.|.+.+++.+-.-+|+....++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 488999984 4 35667788898888887743 1223344444443333346777777665
Q ss_pred CC--CCCcccEEEE
Q 016351 139 IV--LPEKVDVIIS 150 (391)
Q Consensus 139 ~~--~~~~~D~Ivs 150 (391)
.. +-..||+|++
T Consensus 81 ~~~~f~~~fdvVi~ 94 (291)
T cd01488 81 KDEEFYRQFNIIIC 94 (291)
T ss_pred hhHHHhcCCCEEEE
Confidence 42 2268999997
No 408
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.29 E-value=15 Score=33.39 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+......-..++.++..|+.+.. .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988764 4555666788 69999988 555554444433221224778888887642 0
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 14689888743
No 409
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.27 E-value=15 Score=33.12 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=48.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+++|+ ++..+++.|+ +|++++.+ ..++...+.+...+ .++.++..|+.+..-
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456889999998874 4555666788 79999988 55555444444333 237788888766420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+++...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 14689988643
No 410
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=4.1 Score=40.39 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+.+||-||||- |. |...++..|..+|..||++ + .+..|++.+++..-.-++..++++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 467899999985 43 5555676788888887753 1 233455555554434458888999
Q ss_pred cccCCCC----CcccEEEE
Q 016351 136 VEDIVLP----EKVDVIIS 150 (391)
Q Consensus 136 ~~~~~~~----~~~D~Ivs 150 (391)
+.+..++ ++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 9887554 67888875
No 411
>PLN02494 adenosylhomocysteinase
Probab=76.12 E-value=11 Score=37.77 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..+++|+-+|+|. |......++ .|+ +|+++|.+ .....| ...|. .++ ++.+. -...|+|++-.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA----~~~G~----~vv--~leEa--l~~ADVVI~tT- 317 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQA----LMEGY----QVL--TLEDV--VSEADIFVTTT- 317 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHH----HhcCC----eec--cHHHH--HhhCCEEEECC-
Confidence 5789999999997 554444444 477 79999988 332222 22232 222 23222 14689998611
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ....+.......+|+|++++..
T Consensus 318 G-------t~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 318 G-------NKDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred C-------CccchHHHHHhcCCCCCEEEEc
Confidence 1 1112234555779999988854
No 412
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.82 E-value=18 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=52.4
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCC----------CCcEEEEEcccccCCCCCcc
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNL----------QDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~----------~~~v~~i~~d~~~~~~~~~~ 145 (391)
++|.-||+|. +.++..+++.|. +|+++|.+ +.++.+++.+.. .+. ..++++. .|..+. .+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~~a 80 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA--VSGA 80 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH--hccC
Confidence 4688899996 345666777777 79999998 766666553221 110 0112221 222221 1568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
|+|+.-. .........++..+..+++++.+++
T Consensus 81 DlVi~av----~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 81 DLVIEAV----PEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CEEEEec----cCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 9888522 1111124566777777777766554
No 413
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.62 E-value=10 Score=38.99 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-------CCcEEEEEcccccCCC-
Q 016351 74 KHHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-------QDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-------~~~v~~i~~d~~~~~~- 141 (391)
.....+++||-.|+..|+ +...+++.|+ +|+++..+ ..+....+.+....+ ..+++++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 334567889999875332 2334455577 79999887 544433332222111 1348899999987431
Q ss_pred ---CCcccEEEEc
Q 016351 142 ---PEKVDVIISE 151 (391)
Q Consensus 142 ---~~~~D~Ivse 151 (391)
-+.+|+||+.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 1578998874
No 414
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=75.51 E-value=3.2 Score=41.26 Aligned_cols=104 Identities=18% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCCCcccEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLPEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--------~~~~~~D~I 148 (391)
...+|-+|-|.|.+..++-.. +..+++|||+. .|+..|++.+....-. +..+.-.|-.+. .-...||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 467899999999988776554 54589999999 8999998876432211 122222222111 112579999
Q ss_pred EEccccccccCc------chHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRE------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.=+.-.+.- -.-..++..++..|.|.|.+++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 874311111111 12356777889999999998644
No 415
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=75.30 E-value=6.6 Score=37.54 Aligned_cols=95 Identities=27% Similarity=0.289 Sum_probs=55.9
Q ss_pred CCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcc
Q 016351 74 KHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt--G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~~~~~~~ 145 (391)
....++.+||-.|+.. |.+++.+|++ |+ .++++-.+ +-.+. ++..|-...+.+...|+.+ +...+.+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 3445689999998554 5677778876 77 45555555 43333 3444544334444444333 2222479
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+.-. + ...+....+.|+++|.++..
T Consensus 213 Dvv~D~v-G---------~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 213 DVVLDTV-G---------GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred eEEEECC-C---------HHHHHHHHHHhccCCEEEEE
Confidence 9999621 1 13355566778999988743
No 416
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.22 E-value=14 Score=30.75 Aligned_cols=70 Identities=31% Similarity=0.319 Sum_probs=48.2
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCeEEEEech---HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016351 80 KTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT---KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 80 ~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s---~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~~ 142 (391)
++||-.|+++|+ ++..+++.|+.+|+.+..+ +.++...+..+..+ .++.+++.|+.+.. ..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 468889998874 5666777777788888876 44444444455444 45999999977642 11
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
.++|++|..
T Consensus 79 ~~ld~li~~ 87 (167)
T PF00106_consen 79 GPLDILINN 87 (167)
T ss_dssp SSESEEEEE
T ss_pred ccccccccc
Confidence 579999974
No 417
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.17 E-value=8 Score=37.31 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-------ccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-------EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-------~~~~~~~~~ 145 (391)
..++.+||-.|+|. |..+..++++ |+.+|++++.+ ...+.++ ..+.. .++..+. ..+.....+
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~---~vv~~~~~~~~~~l~~~~~~~~v 252 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT---HTVNASEDDAVEAVRDLTDGRGA 252 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe---EEeCCCCccHHHHHHHHcCCCCC
Confidence 45678888888753 5555566665 77559998887 5444443 23432 2222211 111112568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+++.-. + . ...+....+.|+++|.++.
T Consensus 253 d~vld~~-~----~----~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 253 DYAFEAV-G----R----AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CEEEEcC-C----C----hHHHHHHHHHhhcCCeEEE
Confidence 9888521 1 0 1235556677899998874
No 418
>PRK08328 hypothetical protein; Provisional
Probab=75.08 E-value=12 Score=33.83 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=25.6
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEec
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEA 109 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~ 109 (391)
.+.+||-+|||. | ..+..+++.|.++++.+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999995 4 3567788889999999883
No 419
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.02 E-value=15 Score=39.30 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=64.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~--------~~v~~i~~d~~~~~ 140 (391)
++|.-||+|+ ..++..+|.+|. .|+.+|.+ +.++.+++.+... .+. .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999998 356777888898 79999999 8877766554321 111 124332 222222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
...|+||=.. ......-..++..+.+.++|+.++.-+..++-.
T Consensus 391 --~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 433 (715)
T PRK11730 391 --ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTISI 433 (715)
T ss_pred --cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 5789888422 222234567889999999999877655444433
No 420
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=74.81 E-value=14 Score=33.80 Aligned_cols=92 Identities=30% Similarity=0.333 Sum_probs=52.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
...++.+||-.|+|. |..+..+|++ |.++|++++.+ +..+.+++. |..+.+ +... ........+|+|+..
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~~~~~~d~vl~~ 166 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEIGGRGADVVIEA 166 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhhcCCCCCEEEEc
Confidence 345678888888875 6666666665 76449999988 665555542 311111 1110 011112568998852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
. +. ...+....+.|+++|.++.
T Consensus 167 ~-~~--------~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 167 S-GS--------PSALETALRLLRDRGRVVL 188 (277)
T ss_pred c-CC--------hHHHHHHHHHhcCCcEEEE
Confidence 1 10 1234555677899998873
No 421
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=74.81 E-value=8 Score=32.69 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCCCccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016351 326 NGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 326 ~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
+..+| |.+++|++|+.|.+||.|..+..+.....
T Consensus 73 ~dfn~-Q~~y~l~~~v~i~~GD~l~~~C~Ydns~~ 106 (156)
T PF03712_consen 73 YDFNW-QEFYPLKEPVTIPPGDTLRTECTYDNSDR 106 (156)
T ss_dssp TS-----S-EEEEEEEEE-TT-EEEEEEEEE-TT-
T ss_pred CCCcc-ceeEECCCceEecCCCEEEEEEEEeCCCC
Confidence 34466 77899999999999999999998876543
No 422
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.72 E-value=10 Score=37.14 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=29.5
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
+++...++.+||-|..|- -.++.++-.++++|+|||+| ..+...
T Consensus 29 ~aL~i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred HHhCCCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCHHHHHHH
Confidence 345566888999995543 44444455667799999999 544443
No 423
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.71 E-value=20 Score=33.84 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=53.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----CCCCCcc
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----IVLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-----~~~~~~~ 145 (391)
....++.+||.+|+|. |..+..++++ |.++|++++.+ +..+.+++ .+.. .++..+-.+ ....+.+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCC
Confidence 3445678899998753 5555556665 66558889888 66555533 2332 223222111 1122579
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+++... + . ...+....+.|+++|.++.
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 9999521 1 0 1345555678899998874
No 424
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.65 E-value=18 Score=32.58 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.++..+ .++.++..|+.+..-
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999987654 3445666787 69999988 55555544444433 348899999876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+|+...
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 14679999754
No 425
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.64 E-value=26 Score=32.75 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=57.7
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHH-------HcCC-C--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK-------ANNL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~-------~~~~-~--------~~v~~i~~d~~~~~ 140 (391)
++|--||+|. | .++..+++.|. +|+++|.+ +.++.+++.+. ..+. . ..+.+ ..+...+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 5688899985 3 45666777787 79999999 77665544332 1221 0 11222 2222221
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
...|+|+.-. .........++..+...++++.+++-...++
T Consensus 82 --~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 82 --RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred --CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 5689988522 2222334567777778888888766444443
No 426
>PRK06194 hypothetical protein; Provisional
Probab=74.61 E-value=18 Score=33.31 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=47.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.+|.+ ..++...+.....+ .++.++.+|+.+...
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789988876653 4455666787 79999987 55544444343333 248889999876421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+|+...
T Consensus 81 ~g~id~vi~~A 91 (287)
T PRK06194 81 FGAVHLLFNNA 91 (287)
T ss_pred cCCCCEEEECC
Confidence 13579998743
No 427
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.58 E-value=9.3 Score=36.39 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~I 148 (391)
..++.+||-.|+|. |..+..+++. |..+|++++.+ .....+++ .+....+.....+. ..+.....+|++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVV 239 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEE
Confidence 34667787788753 4444555555 74579999887 54444443 34322222221121 112222469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+... + . ...+..+.+.|+++|.++.
T Consensus 240 ld~~-g-------~-~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 240 IEAV-G-------I-PATFELCQELVAPGGHIAN 264 (345)
T ss_pred EECC-C-------C-HHHHHHHHHhccCCcEEEE
Confidence 8521 1 1 1235566688999999874
No 428
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.56 E-value=17 Score=32.49 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C--C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L--P 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~--~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ ..++.+.+.++..+ .++..+..|..+.. . .
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999986 5666777888 69999888 66655555554443 23666666665531 0 1
Q ss_pred -C-cccEEEEcc
Q 016351 143 -E-KVDVIISEW 152 (391)
Q Consensus 143 -~-~~D~Ivse~ 152 (391)
+ .+|+++.+.
T Consensus 80 ~g~~iD~li~na 91 (227)
T PRK08862 80 FNRAPDVLVNNW 91 (227)
T ss_pred hCCCCCEEEECC
Confidence 3 789888754
No 429
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.41 E-value=18 Score=33.72 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------~ 142 (391)
..+++||-=||-+|+ ++..++++|++ ++-+-.. .-++...+..++.+-.+++.++++|+.+.+. .
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 467899999999986 67778888984 5555544 5455553334333333369999999988631 1
Q ss_pred -CcccEEEEcc
Q 016351 143 -EKVDVIISEW 152 (391)
Q Consensus 143 -~~~D~Ivse~ 152 (391)
+..|++|.+.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 6899999864
No 430
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.19 E-value=17 Score=34.96 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~ 152 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +....+. +..|... .+...+...+. ....+|+++--
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~---~~~Ga~~--~i~~~~~~~~~~~~~~~D~vid~- 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEAL---EHLGADD--YLVSSDAAEMQEAADSLDYIIDT- 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH---HhcCCcE--EecCCChHHHHHhcCCCcEEEEC-
Confidence 4678888888765 6666667776 76 68888776 4433332 2344321 11111111110 11357888741
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ . ...+....+.|+++|.++..
T Consensus 252 ~g----~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 VP----V----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CC----c----hHHHHHHHHHhccCCEEEEE
Confidence 11 1 12344455778999988743
No 431
>PRK07806 short chain dehydrogenase; Provisional
Probab=74.11 E-value=45 Score=29.75 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=56.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.+++++|-.|+..|+ +...+++.|. +|+++..+ . ..+......+..+ .++.++.+|+.+...
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456889999976543 3344455677 68888765 2 3333333333322 347888889877421
Q ss_pred -CCcccEEEEccccccc---cCc-------chHHHHHHHHhccccCCeEEEcc
Q 016351 142 -PEKVDVIISEWMGYFL---LRE-------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~---~~e-------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-+.+|+++...-.... ..+ .....+++.+.+.++.+|.++..
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0358988864311100 000 01234566666666666665543
No 432
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.95 E-value=12 Score=35.48 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=51.4
Q ss_pred CEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEEEEc
Q 016351 80 KTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~Ivse 151 (391)
.+||-.|+ |.|..+..+|++ |+.+|++++.+ +..+.+++. .|....+..-..+. .++. ++.+|+|+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-~~gvd~vid- 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-PEGVDVYFD- 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-CCCceEEEE-
Confidence 78999986 347777777776 76579999888 555544432 34422111111111 1111 246899884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.++. . .+....+.|+++|.++.
T Consensus 231 ~~g~--------~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 231 NVGG--------E-ISDTVISQMNENSHIIL 252 (345)
T ss_pred CCCc--------H-HHHHHHHHhccCCEEEE
Confidence 2221 1 13455678999999884
No 433
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.86 E-value=9.4 Score=36.82 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=51.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~~~D 146 (391)
.++.+||-.|+|. |.++..+++. |+.+|++++.+ ...+.+++ .+.. .++..+..+ ......+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCCCC
Confidence 4567788777653 5555556665 77559999887 55554432 3332 223222111 11125689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+... + .. ..+....+.|+++|.++-.
T Consensus 259 ~vld~v-g----~~----~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 259 VVVEAL-G----KP----ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEEEeC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 998521 1 11 1345556789999988743
No 434
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.86 E-value=12 Score=40.04 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=64.9
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~--------~~v~~i~~d~~~~~ 140 (391)
++|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+.+.+..+ .+. .++++. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 346777788888 69999999 8877766655432 111 123332 122222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
...|+||=. .......-..++.++.+.++|+.++.-+..++-.
T Consensus 413 --~~aDlViEA----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 413 --KNADMVIEA----VFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred --ccCCeehhh----ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 578888832 1222234568899999999999987655544443
No 435
>PRK08223 hypothetical protein; Validated
Probab=73.85 E-value=14 Score=34.56 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=44.0
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
++.+||-+|||- | ..+..++++|..+++.+|.+ ..++.|++.+++.+-.-+|+.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 557899999995 4 46788899998888877643 1223344444443322235555544
Q ss_pred cccCC---CCCcccEEEE
Q 016351 136 VEDIV---LPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~---~~~~~D~Ivs 150 (391)
+.+-. +-..+|+|+.
T Consensus 106 l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFLDGVDVYVD 123 (287)
T ss_pred cCccCHHHHHhCCCEEEE
Confidence 43321 1257999984
No 436
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.68 E-value=12 Score=33.98 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s 110 (391)
.+.+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999985 54 4677888899889888843
No 437
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.66 E-value=10 Score=37.00 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=26.6
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016351 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567899999984 44 5677888899899998874
No 438
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.62 E-value=18 Score=38.61 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred CEEEEECCcc-c-HHHHHHH-HcCCCeEEEEech-HHHHHHHHHHHHc-------C-CC--------CcEEEEEcccccC
Q 016351 80 KTVLDVGTGS-G-ILAIWSA-QAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQ--------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a-~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~i~~d~~~~ 139 (391)
++|.-||+|+ | .++..++ .+|. .|+.+|.+ +.++.+++++... + +. +++++. .|...+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 6799999998 3 4566666 6787 79999999 7777766554331 1 11 124333 122211
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
...|+|+=.. ......-..++..+.+.++|+.++.-+..++-.
T Consensus 388 ---~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i 430 (708)
T PRK11154 388 ---KHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPI 430 (708)
T ss_pred ---ccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 5789888422 222234568899999999999887655444433
No 439
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.38 E-value=6.8 Score=36.89 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=53.7
Q ss_pred CCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C--CCCCccc
Q 016351 74 KHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I--VLPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~--~~~~~~D 146 (391)
....++.+||-.|+ |.|.+++.+|++ |+ +|++++.+ +..+.+++ .|....+.....+..+ + ..+..+|
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 33456789998884 346677777776 77 69999887 65555543 4442211111111111 1 0124689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+. .++ . ..+....+.|+++|.++.
T Consensus 214 ~vld-~~g----~-----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 214 CYFD-NVG----G-----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred EEEE-CCC----H-----HHHHHHHHhhccCCEEEE
Confidence 8884 221 1 234556678899999874
No 440
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.00 E-value=9.6 Score=36.27 Aligned_cols=93 Identities=29% Similarity=0.329 Sum_probs=49.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc---ccCCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV---EDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~---~~~~~~~~~D~Ivs 150 (391)
.++.+||-.|+|. |.++..++++ |..+|++++.+ .-.+.++ ..+....+.....+. ..+...+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 4667888888764 5566666665 66568888666 4444333 234321111111111 12222257899986
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. + . ........+.|+++|.++.
T Consensus 238 ~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 238 MS-G----N----PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CC-C----C----HHHHHHHHHHhccCCEEEE
Confidence 22 1 0 1234455677899998874
No 441
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.98 E-value=13 Score=30.72 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=50.5
Q ss_pred EEEECCcc-cH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcc---------cccCC--CCCcccEE
Q 016351 82 VLDVGTGS-GI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGS---------VEDIV--LPEKVDVI 148 (391)
Q Consensus 82 VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d---------~~~~~--~~~~~D~I 148 (391)
|+-+|+|. |. ++-.+++.|. +|+.+..++.++. .+..+ +++...+ ..... ..+++|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 56788886 43 4556666677 7999998862222 33333 2332222 01011 12689998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.-.=. ..+...++.+.+.+.++..+++
T Consensus 72 iv~vKa------~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAVKA------YQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-SSG------GGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEecc------cchHHHHHHHhhccCCCcEEEE
Confidence 862211 1356788889999999976663
No 442
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.97 E-value=21 Score=32.18 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=47.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+..-
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999987653 3444566687 79999988 65555544454443 348888888766420
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
-+++|.+|..
T Consensus 86 ~~~id~vi~~ 95 (256)
T PRK06124 86 HGRLDILVNN 95 (256)
T ss_pred cCCCCEEEEC
Confidence 1467888874
No 443
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=72.94 E-value=5.1 Score=39.89 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCCCEEEEECCcc-cHH-HHHHHHcCCCeEE------EEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 76 HFQGKTVLDVGTGS-GIL-AIWSAQAGARKVY------AVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l-~~~~a~~g~~~V~------avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
.+++++|+-||||+ |.. ++-+...|. .|+ +||.+ +. .+++...|+. + .+..+. -.+.|
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s----~~kA~~dGF~----v--~~~~Ea--~~~AD 99 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRAS----WRKATENGFK----V--GTYEEL--IPQAD 99 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccch----HHHHHhcCCc----c--CCHHHH--HHhCC
Confidence 35789999999998 441 111111244 233 33333 22 2334444552 1 233332 26899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+|+.-. +.+ ....+...+...||||..+.+++.-
T Consensus 100 vVviLl-----PDt-~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 100 LVINLT-----PDK-QHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred EEEEcC-----ChH-HHHHHHHHHHhhCCCCCEEEecCCc
Confidence 999722 222 2445568888999999998887654
No 444
>PRK08303 short chain dehydrogenase; Provisional
Probab=72.73 E-value=26 Score=33.03 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=46.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H----------HHHHHHHHHHHcCCCCcEEEEEcccccCC--
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K----------MSDHARTLVKANNLQDVVEVIEGSVEDIV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~----------~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-- 140 (391)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ . .++.+.+.++..+ .++.+++.|+.+..
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHH
Confidence 567899999998874 3555666787 68888765 1 2233333333333 34778888887642
Q ss_pred ---------CCCcccEEEEcc
Q 016351 141 ---------LPEKVDVIISEW 152 (391)
Q Consensus 141 ---------~~~~~D~Ivse~ 152 (391)
.-+++|++|.+.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 015789999865
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.69 E-value=10 Score=37.01 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=46.8
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEEEEcc
Q 016351 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~~~~D~Ivse~ 152 (391)
.+||-||||. |. .+..+|+.+...|+..|.+ +.+..+...... +++.++.|+.+.+ +-..+|+||+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4699999975 43 3455677775689999999 665555443321 4899999988863 225679999743
No 446
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=72.41 E-value=35 Score=31.67 Aligned_cols=76 Identities=26% Similarity=0.321 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~i~~d~~~~~---------- 140 (391)
.+.++++|--|..+|+ .+..+++.|+ +|+.++.+ +.++...+.....+. ..++..+..|+.+-+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 4678999999999985 5678889999 79999988 766666555554444 356888888887531
Q ss_pred --CCCcccEEEEcc
Q 016351 141 --LPEKVDVIISEW 152 (391)
Q Consensus 141 --~~~~~D~Ivse~ 152 (391)
+-++.|+++.+.
T Consensus 84 ~~~~GkidiLvnna 97 (270)
T KOG0725|consen 84 EKFFGKIDILVNNA 97 (270)
T ss_pred HHhCCCCCEEEEcC
Confidence 136899999854
No 447
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.30 E-value=22 Score=33.90 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++..|+.+...
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456889999987764 3455667787 79999988 65655555555444 348888899876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 83 ~g~iD~lInnA 93 (334)
T PRK07109 83 LGPIDTWVNNA 93 (334)
T ss_pred CCCCCEEEECC
Confidence 14789998754
No 448
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.24 E-value=29 Score=33.81 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HH-HHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KM-SDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~-~~~a~~~~~~~~~~~~v~~i~-~d~~~~~-~~~~~D~Ivs 150 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +. .+.+ +..|.. .++. .+...+. ....+|+++-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 3678899999875 6666777776 77 69999876 43 3333 334542 1221 1111110 1135888884
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
- .+ . ...+....+.|+++|.++..
T Consensus 249 ~-~G----~----~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 249 T-VS----A----EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C-CC----c----HHHHHHHHHhhcCCCEEEEE
Confidence 1 11 1 12345556788999998743
No 449
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=72.08 E-value=4.7 Score=34.77 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=47.6
Q ss_pred CCCCCCEEEEECCcc-cHHH-HHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGS-GILA-IWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~-~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
....+++|.-||+|. |.-. ..+...|. +|+++|.+ .... .....+ + -..++.++- ...|+|+..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell--~~aDiv~~~ 98 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE----GADEFG----V--EYVSLDELL--AQADIVSLH 98 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH----HHHHTT----E--EESSHHHHH--HH-SEEEE-
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh----hccccc----c--eeeehhhhc--chhhhhhhh
Confidence 356789999999986 5433 33333477 89999999 5332 122221 2 222444432 578999863
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. ..+.....+=.+....+|+|.++|-
T Consensus 99 ~p----lt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 99 LP----LTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp SS----SSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hc----cccccceeeeeeeeeccccceEEEe
Confidence 32 1111111112233456899998773
No 450
>PRK08324 short chain dehydrogenase; Validated
Probab=71.76 E-value=33 Score=36.41 Aligned_cols=72 Identities=25% Similarity=0.256 Sum_probs=46.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+.+... ..+.++..|+.+...
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999975543 3444556687 79999998 5554444333222 348888888766420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+.+|+||...
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 14689998743
No 451
>PRK09242 tropinone reductase; Provisional
Probab=71.64 E-value=24 Score=31.91 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+......-..++.++..|+.+.. .
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999997764 4455666787 69999988 655544444433311234888888886631 0
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
-+++|+|+..
T Consensus 86 ~g~id~li~~ 95 (257)
T PRK09242 86 WDGLHILVNN 95 (257)
T ss_pred cCCCCEEEEC
Confidence 1468998874
No 452
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=71.59 E-value=30 Score=32.25 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=49.8
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC---CcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ---DVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~---~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
+|+-||+|. | .++..+++.|. +|+.++.+ +.++..+ .+++. ........-..+....+.+|+|+.-.-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 588899987 3 45666777776 79999986 5444333 22331 1111000001111111678988862211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..+..++..+...+.++..++.
T Consensus 77 ------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 ------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ------ccHHHHHHHHhhhcCCCCEEEE
Confidence 1356677777777877766654
No 453
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=71.26 E-value=12 Score=35.45 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=50.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCccc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d------~~~~~~~~~~D 146 (391)
..++.+||-.|+|. |.++..+++. |..+|++++.+ ...+.++ ..+.. .++..+ +..+.....+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGAD---HVLNASDDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCc---EEEcCCccHHHHHHHHhCCCCCC
Confidence 34578899998664 4445555655 63479998877 5444443 33432 222211 11122124689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+... + . ...+....+.|+++|.++.
T Consensus 238 vvld~~-g----~----~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 238 AVIDFV-G----S----DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred EEEEcC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 998521 1 0 1235555677899998873
No 454
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=71.24 E-value=27 Score=31.26 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
..++++||-.|+..|+ ++..+++.|+ +|++++.+ ..++...+.++..+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 3467899999976543 2344556677 79999988 555444444444332 23677777764321
Q ss_pred --CCCcccEEEEc
Q 016351 141 --LPEKVDVIISE 151 (391)
Q Consensus 141 --~~~~~D~Ivse 151 (391)
.-+++|.||..
T Consensus 87 ~~~~~~id~vi~~ 99 (247)
T PRK08945 87 EEQFGRLDGVLHN 99 (247)
T ss_pred HHHhCCCCEEEEC
Confidence 01468888874
No 455
>PRK07478 short chain dehydrogenase; Provisional
Probab=71.23 E-value=24 Score=31.76 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++..|+.+...
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356789999988764 4556677788 69999987 55555544444443 347888888876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 81 ~~~id~li~~a 91 (254)
T PRK07478 81 FGGLDIAFNNA 91 (254)
T ss_pred cCCCCEEEECC
Confidence 14789988744
No 456
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=71.18 E-value=29 Score=32.75 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=46.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~~ 142 (391)
++++||-.|+..|+ ++..+++.|+ +|+.++.+ ..++.+.+.+... ..++.++..|+.+.. ..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 56789999987653 3445566687 79999887 5444443333221 234888899987642 11
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
.++|++|.+.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 3589999753
No 457
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.14 E-value=25 Score=31.67 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=48.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+++|+ ++..+++.|+ +|+.++.+ .-++.+.+.....+ .++.++..|+.+...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 356889999987764 4555666788 79999988 55544444444333 347888998866321
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+|+...
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 14689988744
No 458
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.14 E-value=33 Score=30.51 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=35.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.+...+- ..+.++..|+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~ 66 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLM 66 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeec
Confidence 456899999976553 3445566677 69999988 555444444433321 12455666654
No 459
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=71.00 E-value=25 Score=31.82 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|+..|+ ++..+++.|+ +|+.++.+ +.++...+.+...+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999965442 2344555677 79999988 66665555554433 347889999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|.|+...
T Consensus 87 ~~~id~vi~~a 97 (259)
T PRK08213 87 FGHVDILVNNA 97 (259)
T ss_pred hCCCCEEEECC
Confidence 14689988743
No 460
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=70.96 E-value=47 Score=31.04 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCccc-H-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSG-I-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG-~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
.....+.+.+........+++|+-||||-- . ....+++.|.++|+.++.+ +-++...+.+.... .. +.+...+
T Consensus 109 TD~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~-~~-~~~~~~~-- 184 (284)
T PRK12549 109 TDWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF-PA-ARATAGS-- 184 (284)
T ss_pred CCHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC-CC-eEEEecc--
Confidence 345566666665433456689999999963 3 2344556788889999998 54443333332211 11 3332211
Q ss_pred cCC-CCCcccEEEE
Q 016351 138 DIV-LPEKVDVIIS 150 (391)
Q Consensus 138 ~~~-~~~~~D~Ivs 150 (391)
++. ....+|+||.
T Consensus 185 ~~~~~~~~aDiVIn 198 (284)
T PRK12549 185 DLAAALAAADGLVH 198 (284)
T ss_pred chHhhhCCCCEEEE
Confidence 111 1156899987
No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.89 E-value=20 Score=33.37 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=47.3
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 81 TVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
+|.-||+|. |.++..+.+.|. +|+++|.+ +.++.+.+ .+. +.....+.. .....|+|+.-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~---~~~~aDlVilavp---- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS---LLKDCDLVILALP---- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh---HhcCCCEEEEcCC----
Confidence 467788885 456666777776 79999998 65555433 222 221111211 1257898885321
Q ss_pred cCcchHHHHHHHHhccccCCeEE
Q 016351 158 LRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
......+++.+...++++.++
T Consensus 67 --~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 --IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHHHHhCCCCcEE
Confidence 112344566666667776544
No 462
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=70.86 E-value=19 Score=31.61 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999995 3 34667788899889888743
No 463
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=70.50 E-value=1.8 Score=36.97 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHH
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDH 115 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~ 115 (391)
.++.+|+-+|.|. |.-+..+++. |+ +|+.+|.. ..++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQ 58 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHh
Confidence 4568999999997 5556555554 77 79999998 54443
No 464
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.37 E-value=14 Score=35.67 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--ccc----cCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SVE----DIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~--d~~----~~~~~~~~ 145 (391)
...++.+||-+|+|. |.++..+|++ |+.+|++++.+ ..++.+++ .|....+..... +.. ++. .+.+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-~~g~ 257 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-DGGV 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-CCCC
Confidence 345678999999865 5666666665 77679999998 66665543 343221211111 111 111 1368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~ 182 (391)
|+|+- ..+. ...+....+.|+++ |.++.
T Consensus 258 d~vid-~~g~--------~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 258 DYTFE-CIGN--------VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred cEEEE-CCCC--------hHHHHHHHHhhccCCCeEEE
Confidence 98884 1121 12344455678886 87774
No 465
>PRK07791 short chain dehydrogenase; Provisional
Probab=70.27 E-value=33 Score=31.81 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=45.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech----------HHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT----------KMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s----------~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--- 140 (391)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.+..+.+.++..+ .++.++..|+.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAA 80 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHH
Confidence 467899999998875 4555677788 68777643 22222222333322 24778888887631
Q ss_pred --------CCCcccEEEEcc
Q 016351 141 --------LPEKVDVIISEW 152 (391)
Q Consensus 141 --------~~~~~D~Ivse~ 152 (391)
.-+++|++|.+.
T Consensus 81 ~~~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHHHhcCCCCEEEECC
Confidence 115789998753
No 466
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=70.22 E-value=9 Score=31.91 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=29.7
Q ss_pred EECCccc--HHHHHHH--HcC-CCeEEEEech-HHHHHHHHH--HHHcCCCCcEEEEEccc
Q 016351 84 DVGTGSG--ILAIWSA--QAG-ARKVYAVEAT-KMSDHARTL--VKANNLQDVVEVIEGSV 136 (391)
Q Consensus 84 DlGcGtG--~l~~~~a--~~g-~~~V~avD~s-~~~~~a~~~--~~~~~~~~~v~~i~~d~ 136 (391)
|||++.| .....++ +.+ ..+|+++|.+ ...+..+++ +..+...+.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444333 332 3479999999 777888877 55554433355555433
No 467
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=70.09 E-value=28 Score=31.05 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
..+++||-.|++.++ ++..+++.|+ +|++++.+ ..+..+.+.+...+ .++.++.+|+.+...
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789988876543 3444566677 79999988 54444444444333 238889988876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|+|+...
T Consensus 81 ~~~~d~vi~~a 91 (251)
T PRK12826 81 FGRLDILVANA 91 (251)
T ss_pred hCCCCEEEECC
Confidence 03689888743
No 468
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.92 E-value=39 Score=32.11 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
..+++++--|+-+|+ .+..+|+.|+ +|+-.-.+ ...+.+++.+.......++.+++.|+.++. .
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 456789999988875 3566777896 78877777 666777666666444556999999988762 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
..+.|++|.+.
T Consensus 112 ~~~ldvLInNA 122 (314)
T KOG1208|consen 112 EGPLDVLINNA 122 (314)
T ss_pred CCCccEEEeCc
Confidence 26789888754
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=69.78 E-value=12 Score=34.04 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
++.+||-+|||. | ..+..+++.|..+++.+|.+ + .++.+++.+++.+-.-+|+.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 457899999995 4 35677888898888887753 1 223344444443333235555444
Q ss_pred cccC---CCCCcccEEEE
Q 016351 136 VEDI---VLPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~---~~~~~~D~Ivs 150 (391)
+.+. .+-..+|+|+.
T Consensus 103 i~~~~~~~~~~~~DlVvd 120 (240)
T TIGR02355 103 LDDAELAALIAEHDIVVD 120 (240)
T ss_pred CCHHHHHHHhhcCCEEEE
Confidence 3321 11257999996
No 470
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.69 E-value=23 Score=32.15 Aligned_cols=73 Identities=26% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HH-HHHHHHHHHHcCCCCcEEEEEcccccCCC---------C-
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KM-SDHARTLVKANNLQDVVEVIEGSVEDIVL---------P- 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~-~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------~- 142 (391)
.+++||-.|+++|+ ++..+++.|..+|++++.+ +. ++.+.+.++..+- .+++++..|+.+..- .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHhc
Confidence 45789999997764 2334455553379999887 43 5554444544432 248899999866421 1
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
+..|+++..
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 478988863
No 471
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=69.64 E-value=5.2 Score=39.60 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCcccHH--HHHHHHcC-CCeEEEEech-HHHHHHHHHHHH---cCCCCcEEEEEcccccCCCC----Cc
Q 016351 76 HFQGKTVLDVGTGSGIL--AIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA---NNLQDVVEVIEGSVEDIVLP----EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l--~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~---~~~~~~v~~i~~d~~~~~~~----~~ 144 (391)
......++|+|.|.|.- +......+ ...++.||.+ +|...+.+..+. +|. +.+...-+.+..+| ..
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~---~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGE---PIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCc---hhccccchhcccCCCCcccc
Confidence 34556788888876643 32222222 4568999999 998887776654 111 11111122222112 56
Q ss_pred ccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 145 VDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
||+|+|.- +......+..+.....-+++..++|+.++
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lV 312 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLV 312 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEE
Confidence 99999832 22333333233444445567788888765
No 472
>PRK07677 short chain dehydrogenase; Provisional
Probab=69.61 E-value=25 Score=31.71 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=46.7
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------CC
Q 016351 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------PE 143 (391)
Q Consensus 79 ~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~~ 143 (391)
++++|-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+.++..+ .++.++..|+.+... -+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3678999997764 3455666788 79999988 55555544444332 348889888866310 14
Q ss_pred cccEEEEcc
Q 016351 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivse~ 152 (391)
+.|++|...
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689988743
No 473
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.53 E-value=36 Score=31.83 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
....++.+||-.|+|. |..+..+++. |+ +|++++.+ +..+.+++ .|....+. . ......+.+|+++.
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~~~-~----~~~~~~~~~d~vid 220 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVETVLP-D----EAESEGGGFDVVVE 220 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcEEeC-c----cccccCCCCCEEEE
Confidence 3445678899888653 4444444554 77 59999888 66666654 34321111 1 11122257999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
- .+ . ...+....+.|+++|.++.
T Consensus 221 ~-~g----~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 221 A-TG----S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred C-CC----C----hHHHHHHHHHhhcCCEEEE
Confidence 2 11 1 1234445567899998874
No 474
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.41 E-value=26 Score=32.66 Aligned_cols=71 Identities=27% Similarity=0.321 Sum_probs=47.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
.+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.....+ .++.++..|+.+... -
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46889999987764 3445566677 79999988 65555444443333 237888888876420 1
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
+.+|+++..
T Consensus 116 g~id~li~~ 124 (293)
T PRK05866 116 GGVDILINN 124 (293)
T ss_pred CCCCEEEEC
Confidence 478999874
No 475
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=69.34 E-value=24 Score=33.45 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCCCcccEEEE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLPEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~~~~D~Ivs 150 (391)
...++.+||-.|+|. |..+..++++ |+ +|++++.+ +..+.+++ .|....+.....+... +.....+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 455678999999754 5555666665 77 69999888 65555533 3432111111111111 100135788884
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
. .+. ...+....+.|+++|.++.
T Consensus 235 ~-~g~--------~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 235 T-APN--------AKAISALVGGLAPRGKLLI 257 (333)
T ss_pred C-CCc--------hHHHHHHHHHcccCCEEEE
Confidence 1 110 1234555678899998874
No 476
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.24 E-value=29 Score=33.39 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE--Eccccc----C--CCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI--EGSVED----I--VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i--~~d~~~----~--~~~ 142 (391)
....++.+||-+|+|. |..+..++++ |+..|++++.+ ...+.+++ .+....+.+- ..+..+ + ...
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcC
Confidence 3445678888888763 5556666665 87778999988 55554443 3433211111 011111 1 112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.+|+|+.-. +. ...+....+.|+++|.++.
T Consensus 253 ~~~d~vid~~-g~--------~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 253 GGIDVSFDCV-GF--------NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred CCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEE
Confidence 4689888521 10 1235556678999998774
No 477
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=69.12 E-value=15 Score=35.53 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--cc----ccCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SV----EDIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~--d~----~~~~~~~~~ 145 (391)
...++.+||-.|+|. |.++..+|++ |+.+|++++.+ +..+.+++ .|....+..... +. .++. .+.+
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~~~ 258 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-GGGV 258 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-CCCC
Confidence 345778999998864 5566666665 77679999988 66665543 443211111110 01 1111 2368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
|+++-- .+. ...+....+.++++ |.++..
T Consensus 259 d~vid~-~G~--------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 259 DYSFEC-TGN--------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CEEEEC-CCC--------hHHHHHHHHHhhcCCCEEEEE
Confidence 888741 111 12344445677886 887643
No 478
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.96 E-value=42 Score=31.51 Aligned_cols=92 Identities=24% Similarity=0.198 Sum_probs=52.8
Q ss_pred CCCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEE
Q 016351 75 HHFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~Iv 149 (391)
...++..||-.|+| .|..+..+++. |. +|++++.+ ...+.+++ .+.. .++...-... ...+.+|+++
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhccCCCCEEE
Confidence 34567789989987 46666666666 76 69999888 66655533 2321 1221111111 0124689888
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... +. ........+.|+++|.++..
T Consensus 231 ~~~-~~--------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 231 VTV-VS--------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ECC-Cc--------HHHHHHHHHhcccCCEEEEE
Confidence 521 11 12345556789999988743
No 479
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.88 E-value=22 Score=32.22 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=41.6
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+||-+|||. |. +...++..|.++++.+|.+ + .++.|.+++++.+-.-+|+.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 478899984 43 5566777898888887754 2 122333444433323346666666632
Q ss_pred ---CC--CCCcccEEEE
Q 016351 139 ---IV--LPEKVDVIIS 150 (391)
Q Consensus 139 ---~~--~~~~~D~Ivs 150 (391)
+. +-+.||+|++
T Consensus 81 ~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 81 EQDFNDTFFEQFHIIVN 97 (234)
T ss_pred hhhchHHHHhCCCEEEE
Confidence 21 2278999997
No 480
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=68.87 E-value=42 Score=31.44 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=40.3
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHH--HHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW--SAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~--~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
......+.+.+.......++++||-||||--.-++. ++..|+++|+.++.+ ...+.|++.++.
T Consensus 105 NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~ 170 (288)
T PRK12749 105 NTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQR 170 (288)
T ss_pred ecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHH
Confidence 344556666666543345678999999986544433 455688899999987 434555555443
No 481
>PRK09186 flagellin modification protein A; Provisional
Probab=68.86 E-value=27 Score=31.42 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
++++||-.|++.|+ ++..+++.|+ +|+++..+ +.++.+.+.+....-...+.++.+|+.+..- -
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56889999987653 3455666687 69999887 5554444444322112346777888876420 1
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|++|...
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3489998754
No 482
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.83 E-value=21 Score=33.30 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=41.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
...++..|||--+|+|..+..+.+.|- +.+++|++ ..++.+.++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 356789999999999999998888876 79999999 8888888888754
No 483
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=68.83 E-value=21 Score=33.65 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCCEEEEECCcccHHHHH----HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEE
Q 016351 78 QGKTVLDVGTGSGILAIW----SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~----~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~~~~D~I 148 (391)
.+++||-.|+ +|.++.. +++.|. +|+++..+ .............+...+++++.+|+.+... -+.+|+|
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 3578999985 4554444 444576 68777655 3322222222222333458999999987531 1468988
Q ss_pred EEc
Q 016351 149 ISE 151 (391)
Q Consensus 149 vse 151 (391)
+..
T Consensus 82 ih~ 84 (325)
T PLN02989 82 FHT 84 (325)
T ss_pred EEe
Confidence 873
No 484
>PRK06196 oxidoreductase; Provisional
Probab=68.78 E-value=29 Score=32.71 Aligned_cols=69 Identities=28% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+. .+.++.+|+.+.. .
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 456889999976653 3444555677 69999888 54443332222 1678888887752 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|++|.+.
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 15789998754
No 485
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.56 E-value=16 Score=35.34 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=53.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d------~~~~~~~~~~ 145 (391)
...++.+||-.|+|. |.++..+|++ |+.+|++++.+ ...+.+++ .|....+.....+ +.++. ...+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-~~g~ 255 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-GGGV 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-CCCC
Confidence 345678999998864 5566666665 77679999988 65555543 3432211111100 11111 1468
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
|+|+-- .+. ...+....+.|+++ |.++..
T Consensus 256 d~vid~-~g~--------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 256 DYSFEC-TGN--------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CEEEEC-CCC--------hHHHHHHHHhcccCCCEEEEE
Confidence 988841 111 12344455678775 887643
No 486
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=68.47 E-value=22 Score=33.31 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCEEEEECCcccHHHHHH----HHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEE
Q 016351 78 QGKTVLDVGTGSGILAIWS----AQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~----a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~~~~D~I 148 (391)
++++||-.|+ +|.++..+ ++.|. +|+++..+ .............+...+++++.+|+.+... -+.+|.|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 3578998885 45554444 44466 68888766 3222222222112223458999999987431 1468988
Q ss_pred EE
Q 016351 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
+.
T Consensus 81 ih 82 (322)
T PLN02662 81 FH 82 (322)
T ss_pred EE
Confidence 86
No 487
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=68.41 E-value=4.5 Score=32.80 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=34.9
Q ss_pred EEEEEcccccC--CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 129 VEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~i~~d~~~~--~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+++..+|+++. .+...+|+|+-+.+...-..+---..++..+.+++++||++.-
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 67788888763 2237899999887654333222235789999999999998873
No 488
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.38 E-value=20 Score=33.97 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=50.7
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC-----CcEEEEEcccc-cCCCCCcccEEEEc
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQ-----DVVEVIEGSVE-DIVLPEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~-----~~v~~i~~d~~-~~~~~~~~D~Ivse 151 (391)
.+|+-||+|. |.++..++++|. .|+.+..+. .+ ....+++. ....+...... ..+....+|+|+.-
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 5799999997 457777888886 688887763 11 13334431 10111100010 11112578988752
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.-.+ .+..++..+..++++++.+++.
T Consensus 80 vK~~------~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKTT------ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecCC------ChHhHHHHHhhhcCCCCEEEEe
Confidence 2111 2345666777778888877643
No 489
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.37 E-value=24 Score=27.01 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=35.2
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse 151 (391)
++|| +-||+|.-+-.+++ ..++.++++|++ +++.+.+..++.. ...+|+|+.-
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC
Confidence 4565 55888866554442 345666778886 8888888776532 2678999973
No 490
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.17 E-value=26 Score=33.27 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=43.8
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+||-+|||. | -++..++..|.++++.+|.+ .-++.|.+.+++.+-.-+|+....++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 488999984 4 35666777898889988743 1233444455443322236666666654
Q ss_pred CC----CCCcccEEEE
Q 016351 139 IV----LPEKVDVIIS 150 (391)
Q Consensus 139 ~~----~~~~~D~Ivs 150 (391)
.. +-..+|+|++
T Consensus 81 ~~~~~~f~~~~DvVv~ 96 (312)
T cd01489 81 PDFNVEFFKQFDLVFN 96 (312)
T ss_pred ccchHHHHhcCCEEEE
Confidence 21 2268999997
No 491
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=68.17 E-value=15 Score=36.04 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=24.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEec
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEA 109 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~ 109 (391)
.+.+||-+|||. | ..+..+++.|.++++.+|.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 457899999996 4 4567788889888888774
No 492
>PRK08643 acetoin reductase; Validated
Probab=68.10 E-value=28 Score=31.34 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------CC
Q 016351 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------PE 143 (391)
Q Consensus 79 ~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~~ 143 (391)
++++|-.|+.+|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++..|+.+..- .+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678888877663 3455666787 79999988 65555544444433 347888888877420 14
Q ss_pred cccEEEEcc
Q 016351 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivse~ 152 (391)
++|++|...
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 689988743
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.87 E-value=18 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999995 4 35667788898888888754
No 494
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=67.74 E-value=29 Score=31.43 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=47.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+...+.+.+.....+ .++.++..|+.+... -
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999998864 3455667788 6888877632333444444333 348889999877421 1
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
+.+|++|..
T Consensus 90 g~id~li~~ 98 (258)
T PRK06935 90 GKIDILVNN 98 (258)
T ss_pred CCCCEEEEC
Confidence 368998874
No 495
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.61 E-value=32 Score=30.73 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.+++.|+.+...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356889999985543 2334555677 69999988 55555544444433 347888888765310
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
.+++|.||..
T Consensus 80 ~~~id~vi~~ 89 (253)
T PRK08217 80 FGQLNGLINN 89 (253)
T ss_pred cCCCCEEEEC
Confidence 1467998874
No 496
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.57 E-value=37 Score=30.23 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
+.+++|-.|+..|+ ++..+++.|. +|++++.+ +-.....+..+..+ .++.++.+|+.+... -
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34688999964432 3445556677 79999988 54444444343322 348889999877421 1
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
++.|++|..
T Consensus 82 ~~id~lv~~ 90 (241)
T PRK07454 82 GCPDVLINN 90 (241)
T ss_pred CCCCEEEEC
Confidence 357999874
No 497
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.05 E-value=31 Score=31.11 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+..|+ ++..+++.|+ +|+.++.+ ..++...+.++..+ .++.++..|+.+...
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999975442 3344555687 79999988 55555555554433 237888888876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|...
T Consensus 85 ~~~~d~li~~a 95 (255)
T PRK07523 85 IGPIDILVNNA 95 (255)
T ss_pred cCCCCEEEECC
Confidence 14689988743
No 498
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.00 E-value=12 Score=35.46 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-------~~~~~~~~~~ 145 (391)
..++..||-.|||. |.+...+|++ |++.+++++.+ ...+.++ ..|.. .++... +..+.....+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~ga~---~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR----EFGAT---DIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCc---eEecCCcccHHHHHHHhcCCCCC
Confidence 44567777788764 5556666665 77669999877 4333333 33432 222221 1111212468
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+++.- .+ . ...+....+.|+++|.++.
T Consensus 239 d~il~~-~g----~----~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 239 DAVLEC-VG----T----QESMEQAIAIARPGGRVGY 266 (345)
T ss_pred CEEEEC-CC----C----HHHHHHHHHhhccCCEEEE
Confidence 988852 11 1 2345556678899998874
No 499
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=66.96 E-value=33 Score=30.95 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+.+|+ ++..+++.|+ +|+.++.+ +.++.+.+..+..+ .++.++..|+.+..-
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999988764 3445666787 68888877 55544444333332 247788888876421
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
.+++|+++..
T Consensus 86 ~~~~d~li~~ 95 (255)
T PRK06113 86 LGKVDILVNN 95 (255)
T ss_pred cCCCCEEEEC
Confidence 1467988874
No 500
>PRK07411 hypothetical protein; Validated
Probab=66.96 E-value=16 Score=35.94 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=45.3
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
...+||-+|||. | ..+..++.+|..+++.+|.+ +. ++.|++.+++.+-.-+|+.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 457899999995 4 46777888898888887743 21 22344444433333346666655
Q ss_pred cccCC---CCCcccEEEE
Q 016351 136 VEDIV---LPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~---~~~~~D~Ivs 150 (391)
+.... +-..+|+|+.
T Consensus 117 ~~~~~~~~~~~~~D~Vvd 134 (390)
T PRK07411 117 LSSENALDILAPYDVVVD 134 (390)
T ss_pred cCHHhHHHHHhCCCEEEE
Confidence 44321 1267999996
Done!