Query 016352
Match_columns 391
No_of_seqs 335 out of 2580
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 2.6E-25 5.7E-30 203.6 5.5 136 3-205 128-265 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.8 4.8E-22 1E-26 182.2 5.0 104 3-128 159-264 (279)
3 KOG1074 Transcriptional repres 99.8 3.7E-20 8E-25 189.9 3.0 49 82-130 606-656 (958)
4 KOG3608 Zn finger proteins [Ge 99.7 1E-16 2.2E-21 150.8 6.1 170 6-205 135-314 (467)
5 KOG3608 Zn finger proteins [Ge 99.6 6.9E-17 1.5E-21 151.9 4.2 169 6-205 178-374 (467)
6 KOG3576 Ovo and related transc 99.6 9.3E-17 2E-21 140.7 3.7 111 2-132 114-237 (267)
7 KOG1074 Transcriptional repres 99.6 5.6E-17 1.2E-21 166.8 -0.0 76 45-127 352-441 (958)
8 KOG3576 Ovo and related transc 99.4 2.5E-14 5.5E-19 125.5 1.4 122 43-209 114-238 (267)
9 KOG3623 Homeobox transcription 99.4 9.9E-14 2.1E-18 140.9 1.9 79 43-128 891-971 (1007)
10 KOG3623 Homeobox transcription 99.4 1.7E-13 3.7E-18 139.2 2.1 106 6-129 211-331 (1007)
11 PLN03086 PRLI-interacting fact 99.1 4.6E-10 1E-14 115.1 10.2 138 7-207 409-564 (567)
12 PLN03086 PRLI-interacting fact 99.0 1E-09 2.3E-14 112.5 7.9 101 3-129 451-562 (567)
13 PHA00733 hypothetical protein 98.8 4.8E-09 1E-13 88.5 4.0 79 43-129 37-121 (128)
14 PHA00733 hypothetical protein 98.7 1.2E-08 2.6E-13 86.1 4.9 84 3-105 38-124 (128)
15 KOG3993 Transcription factor ( 98.6 1.2E-08 2.7E-13 98.8 2.2 158 46-210 267-485 (500)
16 PHA02768 hypothetical protein; 98.6 2.5E-08 5.5E-13 70.3 1.6 43 46-97 5-47 (55)
17 PHA02768 hypothetical protein; 98.3 2.3E-07 5E-12 65.5 2.2 43 81-124 5-48 (55)
18 PF13465 zf-H2C2_2: Zinc-finge 98.3 4E-07 8.6E-12 54.8 2.1 26 68-93 1-26 (26)
19 KOG3993 Transcription factor ( 98.3 1.9E-07 4.2E-12 90.7 0.8 79 6-104 268-379 (500)
20 PF13465 zf-H2C2_2: Zinc-finge 98.2 9.6E-08 2.1E-12 57.5 -1.4 26 170-195 1-26 (26)
21 PHA00616 hypothetical protein 97.8 7.1E-06 1.5E-10 55.2 1.3 34 5-51 1-34 (44)
22 COG5189 SFP1 Putative transcri 97.7 2.9E-05 6.2E-10 73.2 2.9 73 105-206 346-421 (423)
23 COG5189 SFP1 Putative transcri 97.6 2.1E-05 4.7E-10 74.1 0.8 69 43-127 346-418 (423)
24 PHA00732 hypothetical protein 97.5 5.1E-05 1.1E-09 58.4 2.5 47 5-77 1-48 (79)
25 PHA00616 hypothetical protein 97.5 4.6E-05 9.9E-10 51.3 1.5 34 46-86 1-34 (44)
26 PF00096 zf-C2H2: Zinc finger, 97.5 6.6E-05 1.4E-09 43.5 1.9 23 6-28 1-23 (23)
27 PHA00732 hypothetical protein 97.4 0.00014 3E-09 56.0 2.9 45 46-103 1-46 (79)
28 PF05605 zf-Di19: Drought indu 97.1 0.00067 1.5E-08 48.2 4.1 52 5-77 2-53 (54)
29 PF13912 zf-C2H2_6: C2H2-type 97.0 0.00039 8.4E-09 41.9 1.8 25 5-29 1-25 (27)
30 PF13894 zf-C2H2_4: C2H2-type 97.0 0.00051 1.1E-08 39.7 2.2 24 6-29 1-24 (24)
31 PF12756 zf-C2H2_2: C2H2 type 96.9 0.0006 1.3E-08 54.2 2.5 72 7-103 1-72 (100)
32 PF05605 zf-Di19: Drought indu 96.8 0.0021 4.7E-08 45.6 4.5 47 47-103 3-51 (54)
33 PF00096 zf-C2H2: Zinc finger, 96.1 0.0051 1.1E-07 35.3 2.4 16 60-75 7-22 (23)
34 smart00355 ZnF_C2H2 zinc finge 96.1 0.0038 8.2E-08 36.4 1.8 24 6-29 1-24 (26)
35 KOG2231 Predicted E3 ubiquitin 95.8 0.019 4E-07 60.5 6.3 107 6-130 100-235 (669)
36 PF12756 zf-C2H2_2: C2H2 type 95.7 0.0067 1.4E-07 48.0 2.4 71 48-129 1-72 (100)
37 PF12874 zf-met: Zinc-finger o 95.7 0.0062 1.3E-07 35.8 1.6 23 6-28 1-23 (25)
38 PF13894 zf-C2H2_4: C2H2-type 95.4 0.017 3.7E-07 33.0 2.6 17 60-76 7-23 (24)
39 COG5048 FOG: Zn-finger [Genera 95.1 0.0057 1.2E-07 60.9 -0.1 52 60-111 296-354 (467)
40 PF09237 GAGA: GAGA factor; I 95.1 0.018 4E-07 39.8 2.3 23 81-103 24-46 (54)
41 PF13912 zf-C2H2_6: C2H2-type 94.9 0.019 4.1E-07 34.3 1.9 17 60-76 8-24 (27)
42 COG5236 Uncharacterized conser 94.5 0.022 4.7E-07 54.8 2.1 125 46-204 151-302 (493)
43 KOG1146 Homeobox protein [Gene 94.0 0.078 1.7E-06 59.3 5.4 144 44-209 463-615 (1406)
44 PRK04860 hypothetical protein; 93.8 0.032 6.9E-07 48.9 1.7 35 81-119 119-155 (160)
45 PF13909 zf-H2C2_5: C2H2-type 93.6 0.041 9E-07 31.9 1.4 23 6-29 1-23 (24)
46 PF12171 zf-C2H2_jaz: Zinc-fin 93.6 0.018 4E-07 34.5 -0.1 23 6-28 2-24 (27)
47 PRK04860 hypothetical protein; 93.4 0.045 9.8E-07 48.0 1.9 40 45-95 118-157 (160)
48 PF12874 zf-met: Zinc-finger o 93.2 0.053 1.2E-06 31.7 1.4 19 110-128 2-21 (25)
49 PF12171 zf-C2H2_jaz: Zinc-fin 92.6 0.062 1.3E-06 32.2 1.2 22 184-205 2-23 (27)
50 COG5236 Uncharacterized conser 92.4 0.071 1.5E-06 51.4 1.8 126 5-159 151-302 (493)
51 PF09237 GAGA: GAGA factor; I 92.2 0.19 4.2E-06 34.9 3.3 32 43-81 21-52 (54)
52 smart00355 ZnF_C2H2 zinc finge 91.5 0.18 3.8E-06 28.9 2.3 17 60-76 7-23 (26)
53 KOG2231 Predicted E3 ubiquitin 91.1 0.34 7.4E-06 51.3 5.3 88 65-160 126-234 (669)
54 PF13913 zf-C2HC_2: zinc-finge 90.9 0.18 3.9E-06 29.8 1.8 21 109-130 3-24 (25)
55 KOG4173 Alpha-SNAP protein [In 90.9 0.088 1.9E-06 47.2 0.7 78 43-128 76-167 (253)
56 smart00451 ZnF_U1 U1-like zinc 90.8 0.17 3.8E-06 31.9 1.9 25 4-28 2-26 (35)
57 KOG1146 Homeobox protein [Gene 90.7 0.082 1.8E-06 59.2 0.4 120 4-130 464-641 (1406)
58 PF13909 zf-H2C2_5: C2H2-type 88.6 0.5 1.1E-05 27.2 2.5 17 60-77 7-23 (24)
59 PF13913 zf-C2HC_2: zinc-finge 86.1 0.57 1.2E-05 27.6 1.8 21 6-27 3-23 (25)
60 COG5048 FOG: Zn-finger [Genera 85.5 0.25 5.5E-06 49.0 0.0 116 2-122 316-460 (467)
61 smart00451 ZnF_U1 U1-like zinc 85.1 0.66 1.4E-05 29.2 1.8 22 82-103 4-25 (35)
62 KOG2482 Predicted C2H2-type Zn 83.4 5.1 0.00011 39.0 7.7 54 44-103 142-217 (423)
63 KOG2893 Zn finger protein [Gen 82.7 0.38 8.3E-06 44.2 -0.1 40 84-126 13-53 (341)
64 KOG2186 Cell growth-regulating 80.2 1.1 2.4E-05 41.6 2.0 32 69-102 18-49 (276)
65 PF09538 FYDLN_acid: Protein o 79.0 1.3 2.8E-05 36.2 1.8 29 82-120 10-39 (108)
66 COG4049 Uncharacterized protei 78.1 0.96 2.1E-05 32.0 0.7 24 105-128 14-38 (65)
67 COG4049 Uncharacterized protei 77.7 1.1 2.4E-05 31.7 0.9 28 2-29 14-41 (65)
68 KOG2893 Zn finger protein [Gen 75.1 0.87 1.9E-05 41.9 -0.2 44 48-102 12-55 (341)
69 PF09538 FYDLN_acid: Protein o 71.0 2.7 5.9E-05 34.3 1.8 33 2-66 7-39 (108)
70 KOG2482 Predicted C2H2-type Zn 68.3 7.4 0.00016 37.9 4.3 24 5-28 195-218 (423)
71 TIGR02300 FYDLN_acid conserved 66.5 3.8 8.2E-05 34.2 1.7 34 81-124 9-43 (129)
72 KOG2785 C2H2-type Zn-finger pr 66.2 14 0.0003 36.6 5.8 63 5-74 3-89 (390)
73 PF09986 DUF2225: Uncharacteri 64.5 1.7 3.6E-05 40.0 -0.7 12 109-120 49-61 (214)
74 PRK00464 nrdR transcriptional 63.7 1.9 4.1E-05 37.5 -0.5 15 108-122 28-43 (154)
75 PF02892 zf-BED: BED zinc fing 63.2 6.5 0.00014 26.2 2.2 25 3-27 14-42 (45)
76 KOG4173 Alpha-SNAP protein [In 59.6 4.5 9.8E-05 36.6 1.1 79 3-104 77-170 (253)
77 cd00350 rubredoxin_like Rubred 58.9 6.3 0.00014 24.7 1.4 10 80-89 16-25 (33)
78 PF04959 ARS2: Arsenite-resist 57.5 3.1 6.6E-05 38.3 -0.3 23 107-129 76-99 (214)
79 PF12013 DUF3505: Protein of u 57.5 30 0.00064 27.9 5.6 23 5-28 11-33 (109)
80 KOG2071 mRNA cleavage and poly 55.8 16 0.00035 38.3 4.5 28 105-132 415-443 (579)
81 PF12013 DUF3505: Protein of u 55.5 25 0.00053 28.4 4.8 21 109-129 81-106 (109)
82 KOG4124 Putative transcription 55.3 1.7 3.6E-05 42.3 -2.5 70 44-127 347-418 (442)
83 PF13717 zinc_ribbon_4: zinc-r 54.9 9.7 0.00021 24.5 1.8 31 83-117 4-35 (36)
84 cd00729 rubredoxin_SM Rubredox 54.9 6.6 0.00014 24.9 1.0 8 81-88 18-25 (34)
85 COG1997 RPL43A Ribosomal prote 54.6 7.2 0.00016 30.3 1.3 12 107-118 52-64 (89)
86 smart00614 ZnF_BED BED zinc fi 53.2 9.5 0.00021 26.2 1.7 23 6-28 19-47 (50)
87 PF13719 zinc_ribbon_5: zinc-r 52.8 10 0.00023 24.4 1.7 31 83-117 4-35 (37)
88 KOG4167 Predicted DNA-binding 52.8 3.5 7.6E-05 43.9 -0.8 28 182-209 791-818 (907)
89 COG1592 Rubrerythrin [Energy p 52.7 7.7 0.00017 34.2 1.4 11 81-91 134-144 (166)
90 TIGR00373 conserved hypothetic 48.4 17 0.00037 31.7 2.9 34 78-119 106-140 (158)
91 KOG4167 Predicted DNA-binding 47.3 5.3 0.00011 42.6 -0.5 25 5-29 792-816 (907)
92 smart00531 TFIIE Transcription 46.2 24 0.00052 30.3 3.5 38 79-119 97-135 (147)
93 PF05443 ROS_MUCR: ROS/MUCR tr 45.5 18 0.00038 30.7 2.4 37 106-145 70-107 (132)
94 smart00734 ZnF_Rad18 Rad18-lik 45.4 14 0.0003 21.9 1.3 20 184-204 2-21 (26)
95 PRK06266 transcription initiat 44.4 17 0.00037 32.4 2.3 33 79-119 115-148 (178)
96 KOG2785 C2H2-type Zn-finger pr 43.0 42 0.00091 33.4 4.9 74 44-128 164-241 (390)
97 TIGR00622 ssl1 transcription f 40.3 35 0.00076 28.0 3.3 88 4-102 14-102 (112)
98 PF06524 NOA36: NOA36 protein; 40.2 29 0.00062 32.7 3.1 83 104-199 138-225 (314)
99 COG5188 PRP9 Splicing factor 3 39.8 10 0.00022 37.1 0.2 27 177-203 368-395 (470)
100 KOG2186 Cell growth-regulating 39.8 14 0.00031 34.6 1.1 46 81-128 3-49 (276)
101 KOG4124 Putative transcription 39.7 10 0.00022 37.1 0.1 75 106-209 347-424 (442)
102 KOG2593 Transcription initiati 39.3 31 0.00067 34.9 3.4 39 77-117 124-163 (436)
103 PF14353 CpXC: CpXC protein 38.9 31 0.00067 28.7 3.0 18 109-126 39-57 (128)
104 COG4530 Uncharacterized protei 38.4 16 0.00034 29.7 1.0 26 83-118 11-37 (129)
105 TIGR00622 ssl1 transcription f 38.3 35 0.00076 28.0 3.0 76 44-129 13-103 (112)
106 PF09986 DUF2225: Uncharacteri 36.1 6 0.00013 36.4 -2.0 44 44-94 3-61 (214)
107 PF04959 ARS2: Arsenite-resist 36.0 23 0.0005 32.6 1.8 28 2-29 74-101 (214)
108 TIGR02300 FYDLN_acid conserved 35.4 22 0.00048 29.8 1.5 12 6-17 10-21 (129)
109 COG2888 Predicted Zn-ribbon RN 33.1 48 0.001 23.9 2.6 8 107-114 49-57 (61)
110 PRK06266 transcription initiat 32.8 26 0.00057 31.2 1.7 35 43-93 114-148 (178)
111 COG1198 PriA Primosomal protei 32.6 22 0.00047 38.8 1.3 23 170-192 462-484 (730)
112 PF05290 Baculo_IE-1: Baculovi 31.9 20 0.00044 30.2 0.7 13 110-122 123-136 (140)
113 KOG1280 Uncharacterized conser 31.4 24 0.00052 34.6 1.2 29 80-108 78-107 (381)
114 PHA00626 hypothetical protein 31.2 24 0.00053 25.1 0.9 15 4-18 22-36 (59)
115 PRK14890 putative Zn-ribbon RN 30.8 39 0.00084 24.4 1.9 9 107-115 47-56 (59)
116 TIGR00373 conserved hypothetic 30.5 65 0.0014 28.1 3.7 35 43-93 106-140 (158)
117 PTZ00255 60S ribosomal protein 30.5 26 0.00056 27.6 1.0 13 107-119 53-66 (90)
118 COG1592 Rubrerythrin [Energy p 30.0 32 0.0007 30.3 1.7 25 45-89 133-157 (166)
119 PF06524 NOA36: NOA36 protein; 29.4 41 0.00088 31.7 2.3 20 105-124 206-226 (314)
120 PF10571 UPF0547: Uncharacteri 29.1 28 0.00061 20.7 0.8 11 184-194 15-25 (26)
121 PF15135 UPF0515: Uncharacteri 27.9 59 0.0013 30.5 3.1 59 43-120 109-168 (278)
122 PRK09678 DNA-binding transcrip 27.9 19 0.00042 27.1 -0.0 15 106-120 25-42 (72)
123 TIGR02098 MJ0042_CXXC MJ0042 f 27.7 40 0.00087 21.5 1.4 16 6-21 3-18 (38)
124 TIGR00280 L37a ribosomal prote 27.0 29 0.00063 27.4 0.8 13 107-119 52-65 (91)
125 smart00440 ZnF_C2C2 C2C2 Zinc 26.7 12 0.00027 24.6 -1.1 10 108-117 28-38 (40)
126 KOG4377 Zn-finger protein [Gen 26.5 28 0.00061 34.8 0.8 116 5-130 271-426 (480)
127 PF09723 Zn-ribbon_8: Zinc rib 25.6 23 0.0005 23.5 -0.0 16 5-20 5-20 (42)
128 smart00531 TFIIE Transcription 25.5 59 0.0013 27.8 2.5 40 43-93 96-135 (147)
129 COG4957 Predicted transcriptio 25.1 32 0.0007 29.0 0.8 20 7-29 78-97 (148)
130 smart00154 ZnF_AN1 AN1-like Zi 24.6 36 0.00077 22.3 0.8 14 5-18 12-25 (39)
131 PF15269 zf-C2H2_7: Zinc-finge 24.5 49 0.0011 22.4 1.4 23 6-28 21-43 (54)
132 PF01780 Ribosomal_L37ae: Ribo 24.3 22 0.00047 28.0 -0.4 11 108-118 53-64 (90)
133 PF07975 C1_4: TFIIH C1-like d 23.6 19 0.00041 25.2 -0.7 26 4-29 20-45 (51)
134 KOG3408 U1-like Zn-finger-cont 23.3 49 0.0011 27.5 1.5 26 3-28 55-80 (129)
135 PF07754 DUF1610: Domain of un 23.1 38 0.00082 19.8 0.6 10 4-13 15-24 (24)
136 PRK03976 rpl37ae 50S ribosomal 22.4 37 0.00081 26.7 0.6 13 107-119 53-66 (90)
137 PRK04023 DNA polymerase II lar 22.1 73 0.0016 35.9 2.9 12 108-119 663-675 (1121)
138 COG5151 SSL1 RNA polymerase II 21.5 48 0.001 32.0 1.3 46 84-130 365-411 (421)
139 PF03145 Sina: Seven in absent 21.3 71 0.0015 28.7 2.3 30 44-79 42-73 (198)
140 PRK00398 rpoP DNA-directed RNA 21.0 61 0.0013 21.7 1.4 14 4-17 2-15 (46)
141 smart00834 CxxC_CXXC_SSSS Puta 20.9 44 0.00095 21.4 0.6 16 4-19 4-19 (41)
142 TIGR02605 CxxC_CxxC_SSSS putat 20.8 28 0.00061 23.9 -0.4 10 80-89 25-34 (52)
143 KOG0696 Serine/threonine prote 20.7 31 0.00068 35.0 -0.2 59 2-89 70-129 (683)
144 COG5151 SSL1 RNA polymerase II 20.4 46 0.00099 32.2 0.9 25 181-205 386-410 (421)
145 PF13134 DUF3948: Protein of u 20.4 56 0.0012 20.6 0.9 11 338-348 12-22 (35)
146 PRK04023 DNA polymerase II lar 20.2 1.1E+02 0.0023 34.7 3.6 13 183-195 663-675 (1121)
147 PF12760 Zn_Tnp_IS1595: Transp 20.1 1.1E+02 0.0023 20.6 2.5 27 81-115 18-45 (46)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.91 E-value=2.6e-25 Score=203.57 Aligned_cols=136 Identities=21% Similarity=0.452 Sum_probs=126.2
Q ss_pred CCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCc
Q 016352 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~ 82 (391)
...|+|..|+|.|.+..+|-+|..+|- .....+.+.|++ | +|.|...-.|+.|+|+|+ -++
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~----------~~~s~ka~~C~~--C-----~K~YvSmpALkMHirTH~--l~c 188 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHR----------SLDSKKAFSCKY--C-----GKVYVSMPALKMHIRTHT--LPC 188 (279)
T ss_pred CCceeccccccccccccccchhhcccc----------cccccccccCCC--C-----CceeeehHHHhhHhhccC--CCc
Confidence 347999999999999999999999995 122478899999 9 999999999999999998 589
Q ss_pred cCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCCCcCCchhhhhcccc
Q 016352 83 KCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRRDSFITHRAFCDALAEESQKANQGLNPQLGHVSEHISSMPI 160 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p~f~~~~~L~~H~~~ 160 (391)
+|.+|||.|.+.--|+-|+|+ +|||||.|. |+|.|..+++|+.|++
T Consensus 189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ-------------------------------- 236 (279)
T KOG2462|consen 189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ-------------------------------- 236 (279)
T ss_pred ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH--------------------------------
Confidence 999999999999999999999 899999999 9999999999999998
Q ss_pred cCCCCCCCCccccccccCCCCCCccCCccccccCCchhHHhhhhc
Q 016352 161 NNHTENNNNPLAHHELMPMPPKPFNTMAAASIFESSNNNLQQSAA 205 (391)
Q Consensus 161 h~~e~~~~~~L~~H~~~htg~kp~~C~~C~~~F~~~~~L~~H~~~ 205 (391)
+|.+.|+|+|..|+|.|+.++-|.+|+..
T Consensus 237 ----------------THS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 237 ----------------THSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred ----------------hhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 67789999999999999999999999954
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.85 E-value=4.8e-22 Score=182.23 Aligned_cols=104 Identities=28% Similarity=0.583 Sum_probs=99.9
Q ss_pred CCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCc
Q 016352 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~ 82 (391)
.+-|.|+.|+|.|.....|+.|+|+|+ .+++|.+ | ||.|.....|+-|+|+|+|||||
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~i--C-----GKaFSRPWLLQGHiRTHTGEKPF 216 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECGI--C-----GKAFSRPWLLQGHIRTHTGEKPF 216 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC---------------CCccccc--c-----cccccchHHhhcccccccCCCCc
Confidence 567999999999999999999999996 5789999 9 99999999999999999999999
Q ss_pred cCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccChhHHHHHHH
Q 016352 83 KCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRRDSFITHRA 128 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~~~L~~H~~ 128 (391)
.|..|+|+|+.+++|+.|+++ .+.|+|+|. |+|+|...+.|.+|..
T Consensus 217 ~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 217 SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 999999999999999999999 688999999 9999999999999996
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.78 E-value=3.7e-20 Score=189.88 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=46.4
Q ss_pred ccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccChhHHHHHHHHh
Q 016352 82 WKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRRDSFITHRAFC 130 (391)
Q Consensus 82 ~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~~~L~~H~~~h 130 (391)
-+|-+|-+...-++.|+.|.++ .||+||+|. |++.|.++.+|+.|+.+|
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vH 656 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVH 656 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccc
Confidence 4799999999999999999999 799999999 999999999999999876
No 4
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.65 E-value=1e-16 Score=150.76 Aligned_cols=170 Identities=19% Similarity=0.320 Sum_probs=131.9
Q ss_pred eec--cccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCcc
Q 016352 6 FVC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWK 83 (391)
Q Consensus 6 f~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~ 83 (391)
|.| +.|+..|.....|..|+..|..-...............+.|.+..| -+.|.+++.|.+|+|.|++||.-.
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~C-----t~~~~~k~~LreH~r~Hs~eKvvA 209 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMC-----TKHMGNKYRLREHIRTHSNEKVVA 209 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhh-----hhhhccHHHHHHHHHhcCCCeEEe
Confidence 556 6899999999999999999972111111112222345688999889 999999999999999999999999
Q ss_pred CCcCccccCChhHHHHHHhh-c--CCCceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCC----CcCCchhhh
Q 016352 84 CEKCSKKYAVQSDWKAHSKT-C--GTKEYKCD-CGTIFSRRDSFITHRAFCDALAEESQKANQGLNP----QLGHVSEHI 155 (391)
Q Consensus 84 C~~C~k~F~~~~~L~~H~~~-~--gek~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p----~f~~~~~L~ 155 (391)
|+.|+.-|.++..|-.|.+. + ...+|.|. |.|.|.+...|+.|+..| +..=..| +....++|.
T Consensus 210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH---------vn~ykCplCdmtc~~~ssL~ 280 (467)
T KOG3608|consen 210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH---------VNCYKCPLCDMTCSSASSLT 280 (467)
T ss_pred cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh---------hhcccccccccCCCChHHHH
Confidence 99999999999999999987 3 56799999 999999999999999854 1221222 567777787
Q ss_pred hcccccCCCCCCCCccccccccCCCCCCccCCccccccCCchhHHhhhhc
Q 016352 156 SSMPINNHTENNNNPLAHHELMPMPPKPFNTMAAASIFESSNNNLQQSAA 205 (391)
Q Consensus 156 ~H~~~h~~e~~~~~~L~~H~~~htg~kp~~C~~C~~~F~~~~~L~~H~~~ 205 (391)
.|++. .|..+|||+|+.|++.|.+.+.|.+|...
T Consensus 281 ~H~r~----------------rHs~dkpfKCd~Cd~~c~~esdL~kH~~~ 314 (467)
T KOG3608|consen 281 THIRY----------------RHSKDKPFKCDECDTRCVRESDLAKHVQV 314 (467)
T ss_pred HHHHh----------------hhccCCCccccchhhhhccHHHHHHHHHh
Confidence 77775 44556777777777777777777777743
No 5
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.65 E-value=6.9e-17 Score=151.87 Aligned_cols=169 Identities=21% Similarity=0.417 Sum_probs=132.6
Q ss_pred eecc--ccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc--CCCC
Q 016352 6 FVCE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH--GEKK 81 (391)
Q Consensus 6 f~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~--~ekp 81 (391)
+.|. .|-+.|..+..|++|++.|+ +++...|+. | +..|.++..|..|.+..+ ...+
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs-------------~eKvvACp~--C-----g~~F~~~tkl~DH~rRqt~l~~n~ 237 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHS-------------NEKVVACPH--C-----GELFRTKTKLFDHLRRQTELNTNS 237 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcC-------------CCeEEecch--H-----HHHhccccHHHHHHHhhhhhcCCc
Confidence 4564 69999999999999999998 888889988 8 888999988998987655 3567
Q ss_pred ccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCC--------CcCCch
Q 016352 82 WKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITHRAFCDALAEESQKANQGLNP--------QLGHVS 152 (391)
Q Consensus 82 ~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p--------~f~~~~ 152 (391)
|.|..|.|.|.+...|+.|+..| ..-|+|+ |+.+....++|.+|++. .|...+| .|...+
T Consensus 238 fqC~~C~KrFaTeklL~~Hv~rH-vn~ykCplCdmtc~~~ssL~~H~r~----------rHs~dkpfKCd~Cd~~c~~es 306 (467)
T KOG3608|consen 238 FQCAQCFKRFATEKLLKSHVVRH-VNCYKCPLCDMTCSSASSLTTHIRY----------RHSKDKPFKCDECDTRCVRES 306 (467)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHh-hhcccccccccCCCChHHHHHHHHh----------hhccCCCccccchhhhhccHH
Confidence 88888888888888888888774 2448888 88888888888888874 4555565 567778
Q ss_pred hhhhcccccCCCCC------------CCCccccccc-cCCC--CCCccCCccccccCCchhHHhhhhc
Q 016352 153 EHISSMPINNHTEN------------NNNPLAHHEL-MPMP--PKPFNTMAAASIFESSNNNLQQSAA 205 (391)
Q Consensus 153 ~L~~H~~~h~~e~~------------~~~~L~~H~~-~htg--~kp~~C~~C~~~F~~~~~L~~H~~~ 205 (391)
+|.+|..+|...-- ....+++|++ +|.| +-+|.|..|++.|.+-.+|..|+..
T Consensus 307 dL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~k 374 (467)
T KOG3608|consen 307 DLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMK 374 (467)
T ss_pred HHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHH
Confidence 88888877762211 4455667776 4445 4579999999999999999999944
No 6
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.64 E-value=9.3e-17 Score=140.72 Aligned_cols=111 Identities=25% Similarity=0.599 Sum_probs=102.6
Q ss_pred CCCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCC
Q 016352 2 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKK 81 (391)
Q Consensus 2 g~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp 81 (391)
+...|.|.+|+|.|.-..-|.+|++.|. .-+.|.|.. | +|.|.....|++|+|+|+|.+|
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~--c-----gkgfndtfdlkrh~rthtgvrp 173 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTF--C-----GKGFNDTFDLKRHTRTHTGVRP 173 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhh--c-----cCcccchhhhhhhhccccCccc
Confidence 3457999999999999999999999998 678899999 9 9999999999999999999999
Q ss_pred ccCCcCccccCChhHHHHHHhh-cC-----------CCceecC-CCCcccChhHHHHHHHHhhh
Q 016352 82 WKCEKCSKKYAVQSDWKAHSKT-CG-----------TKEYKCD-CGTIFSRRDSFITHRAFCDA 132 (391)
Q Consensus 82 ~~C~~C~k~F~~~~~L~~H~~~-~g-----------ek~~~C~-C~k~F~~~~~L~~H~~~h~~ 132 (391)
|+|..|+|.|+++-.|..|++. || +|.|.|+ ||.+-.....+..|++.|+.
T Consensus 174 ykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 174 YKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred cchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 9999999999999999999987 75 4779999 99999999999999986654
No 7
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.62 E-value=5.6e-17 Score=166.76 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=63.0
Q ss_pred ceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhhcCCCc-------------eec
Q 016352 45 RVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKE-------------YKC 111 (391)
Q Consensus 45 ~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~-------------~~C 111 (391)
.+++|.+ | +|.|...+.|+.|.|.|++|+||+|.+||.+|.++.+|+.|...|.++. +.|
T Consensus 352 ~khkCr~--C-----akvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~ 424 (958)
T KOG1074|consen 352 FKHKCRF--C-----AKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQY 424 (958)
T ss_pred ccchhhh--h-----HhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcc
Confidence 3578999 9 9999999999999999999999999999999999999999998865542 356
Q ss_pred C-CCCcccChhHHHHHH
Q 016352 112 D-CGTIFSRRDSFITHR 127 (391)
Q Consensus 112 ~-C~k~F~~~~~L~~H~ 127 (391)
. |...|.+--+..-+.
T Consensus 425 ~i~st~~p~g~~vpp~k 441 (958)
T KOG1074|consen 425 VITSTGLPYGPSVPPEK 441 (958)
T ss_pred eeeccccCCCCCCCCCC
Confidence 6 666666555544444
No 8
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.43 E-value=2.5e-14 Score=125.51 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=104.6
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccCh
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRR 120 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~ 120 (391)
....|.|.+ | +|.|.....|.+|++-|...|.|.|..|||.|...-+|++|+++ +|.+||+|. |+|.|.++
T Consensus 114 d~d~ftCrv--C-----gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr 186 (267)
T KOG3576|consen 114 DQDSFTCRV--C-----GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR 186 (267)
T ss_pred CCCeeeeeh--h-----hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence 456899999 9 99999999999999999999999999999999999999999999 799999999 99999999
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcCCCC-CcCCchhhhhcccccCCCCCCCCccccccccCCCCCCccCCccccccCCchhH
Q 016352 121 DSFITHRAFCDALAEESQKANQGLNP-QLGHVSEHISSMPINNHTENNNNPLAHHELMPMPPKPFNTMAAASIFESSNNN 199 (391)
Q Consensus 121 ~~L~~H~~~h~~~~~~~~~~h~~~~p-~f~~~~~L~~H~~~h~~e~~~~~~L~~H~~~htg~kp~~C~~C~~~F~~~~~L 199 (391)
-+|..|.+ ++|..... .| ....+|.|.|..||..-.+...+
T Consensus 187 csleshl~----------kvhgv~~~yay----------------------------kerr~kl~vcedcg~t~~~~e~~ 228 (267)
T KOG3576|consen 187 CSLESHLK----------KVHGVQHQYAY----------------------------KERRAKLYVCEDCGYTSERPEVY 228 (267)
T ss_pred ccHHHHHH----------HHcCchHHHHH----------------------------HHhhhheeeecccCCCCCChhHH
Confidence 99999998 34431110 00 01146789999999999999999
Q ss_pred HhhhhccCCC
Q 016352 200 LQQSAAASAS 209 (391)
Q Consensus 200 ~~H~~~~~~s 209 (391)
..|++..++.
T Consensus 229 ~~h~~~~hp~ 238 (267)
T KOG3576|consen 229 YLHLKLHHPF 238 (267)
T ss_pred HHHHHhcCCC
Confidence 9999776654
No 9
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.38 E-value=9.9e-14 Score=140.88 Aligned_cols=79 Identities=24% Similarity=0.638 Sum_probs=73.0
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccCh
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRR 120 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~ 120 (391)
....|.|+. | +|.|...+.|.+|.--|+|.|||+|.+|.|+|..+.+|..|+|. .|||||+|+ |+|+|+..
T Consensus 891 e~gmyaCDq--C-----DK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHS 963 (1007)
T KOG3623|consen 891 EDGMYACDQ--C-----DKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHS 963 (1007)
T ss_pred ccccchHHH--H-----HHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccc
Confidence 567899999 9 99999999999999999999999999999999999999999999 699999999 99999999
Q ss_pred hHHHHHHH
Q 016352 121 DSFITHRA 128 (391)
Q Consensus 121 ~~L~~H~~ 128 (391)
.++..||.
T Consensus 964 GSYSQHMN 971 (1007)
T KOG3623|consen 964 GSYSQHMN 971 (1007)
T ss_pred cchHhhhc
Confidence 99999996
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.36 E-value=1.7e-13 Score=139.18 Aligned_cols=106 Identities=25% Similarity=0.594 Sum_probs=95.1
Q ss_pred eeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcC-------
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHG------- 78 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~------- 78 (391)
..|..|...|++...|+.|++.-+ +..+.-|.|.. | ...|.++..|.+|+.+|..
T Consensus 211 ltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~l--C-----sytFAyRtQLErhm~~hkpg~dqa~s 272 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCML--C-----SYTFAYRTQLERHMQLHKPGGDQAIS 272 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchh--h-----hhhhhhHHHHHHHHHhhcCCCccccc
Confidence 579999999999999999987654 12456788999 9 9999999999999999863
Q ss_pred ------CCCccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccChhHHHHHHHH
Q 016352 79 ------EKKWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRRDSFITHRAF 129 (391)
Q Consensus 79 ------ekp~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~~~L~~H~~~ 129 (391)
-|.|+|.+|+|+|..+.+|+.|+|+ .|||||.|+ |.|+|+...++..|+..
T Consensus 273 ltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 273 LTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred ccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence 3679999999999999999999999 699999999 99999999999999963
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.08 E-value=4.6e-10 Score=115.05 Aligned_cols=138 Identities=16% Similarity=0.285 Sum_probs=104.1
Q ss_pred eccccccccCChhhHHHHHHhcC-----CC-cccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCC
Q 016352 7 VCEICNKGFQRDQNLQLHRRGHN-----LP-WKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEK 80 (391)
Q Consensus 7 ~C~~C~k~F~~~~~L~~H~~~H~-----~~-~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ek 80 (391)
.|..|.+... ..+|..|..... .| ..|.........++.+.|+. | ++.|. ...|..|+++|+ +
T Consensus 409 ~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~--C-----gk~f~-~s~LekH~~~~H--k 477 (567)
T PLN03086 409 ECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEK--C-----GQAFQ-QGEMEKHMKVFH--E 477 (567)
T ss_pred ECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCC--C-----CCccc-hHHHHHHHHhcC--C
Confidence 6989988654 567778876654 12 12444444444567789999 9 99996 678999999986 7
Q ss_pred CccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccC----------hhHHHHHHHHhhhhhhhhhhhhcCCCCCc
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSR----------RDSFITHRAFCDALAEESQKANQGLNPQL 148 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~----------~~~L~~H~~~h~~~~~~~~~~h~~~~p~f 148 (391)
++.|+ |++.+ .+..|..|+.+ +.++++.|. |++.|.. .+.|..|..
T Consensus 478 pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~-------------------- 535 (567)
T PLN03086 478 PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES-------------------- 535 (567)
T ss_pred CccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHH--------------------
Confidence 99999 99755 67999999988 899999999 9999953 235666664
Q ss_pred CCchhhhhcccccCCCCCCCCccccccccCCCCCCccCCccccccCCchhHHhhhhccC
Q 016352 149 GHVSEHISSMPINNHTENNNNPLAHHELMPMPPKPFNTMAAASIFESSNNNLQQSAAAS 207 (391)
Q Consensus 149 ~~~~~L~~H~~~h~~e~~~~~~L~~H~~~htg~kp~~C~~C~~~F~~~~~L~~H~~~~~ 207 (391)
. .|.+++.|..|++.|..+ .|..|+.+.+
T Consensus 536 ----------------------------~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 536 ----------------------------I-CGSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred ----------------------------h-cCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 3 288999999999888765 5677775544
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.97 E-value=1e-09 Score=112.46 Aligned_cols=101 Identities=22% Similarity=0.493 Sum_probs=86.4
Q ss_pred CCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCc
Q 016352 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~ 82 (391)
++.+.|+.|++.|. ...|..|++.|+ +++.|+ | ++.+ .+..|..|+++|..++++
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp---C-----g~~~-~R~~L~~H~~thCp~Kpi 505 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP---C-----GVVL-EKEQMVQHQASTCPLRLI 505 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC---C-----CCCc-chhHHHhhhhccCCCCce
Confidence 46788999999996 688999999874 578997 7 7655 678999999999999999
Q ss_pred cCCcCccccC----------ChhHHHHHHhhcCCCceecC-CCCcccChhHHHHHHHH
Q 016352 83 KCEKCSKKYA----------VQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITHRAF 129 (391)
Q Consensus 83 ~C~~C~k~F~----------~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H~~~ 129 (391)
.|..|++.|. ....|..|...+|.+++.|. |++.|..+ .+..|+..
T Consensus 506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~ 562 (567)
T PLN03086 506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIA 562 (567)
T ss_pred eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHH
Confidence 9999999995 24589999999999999999 99998765 56788874
No 13
>PHA00733 hypothetical protein
Probab=98.78 E-value=4.8e-09 Score=88.52 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=66.4
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHH--HH---HhcCCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCc
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKH--FS---RKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTI 116 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H--~~---~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~ 116 (391)
..+++.|.+ | .+.|.....|..+ ++ .+++++||.|+.|++.|.....|..|++.+ +.+|.|. |++.
T Consensus 37 ~~~~~~~~~--~-----~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~ 108 (128)
T PHA00733 37 EQKRLIRAV--V-----KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE 108 (128)
T ss_pred hhhhHHHHH--H-----hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence 568899999 8 7777777666655 22 334588999999999999999999999875 4679999 9999
Q ss_pred ccChhHHHHHHHH
Q 016352 117 FSRRDSFITHRAF 129 (391)
Q Consensus 117 F~~~~~L~~H~~~ 129 (391)
|.....|..|++.
T Consensus 109 F~~~~sL~~H~~~ 121 (128)
T PHA00733 109 FRNTDSTLDHVCK 121 (128)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999999974
No 14
>PHA00733 hypothetical protein
Probab=98.73 E-value=1.2e-08 Score=86.08 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=70.2
Q ss_pred CCceeccccccccCChhhHHHH--HHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCC
Q 016352 3 TNRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEK 80 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~~~L~~H--~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ek 80 (391)
.+++.|.+|.+.|.....|..| ++.|. .....++|+|+. | ++.|.....|..|++.| +.
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~--C-----gk~Fss~s~L~~H~r~h--~~ 98 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPL--C-----LMPFSSSVSLKQHIRYT--EH 98 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCC--C-----CCcCCCHHHHHHHHhcC--Cc
Confidence 5789999999999988777766 33331 112578999999 9 99999999999999987 45
Q ss_pred CccCCcCccccCChhHHHHHHhh-cC
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKT-CG 105 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~-~g 105 (391)
+|.|..|++.|.....|..|+.. |+
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 79999999999999999999987 65
No 15
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.63 E-value=1.2e-08 Score=98.78 Aligned_cols=158 Identities=15% Similarity=0.291 Sum_probs=103.9
Q ss_pred eeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhhcCCC------------------
Q 016352 46 VYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTK------------------ 107 (391)
Q Consensus 46 ~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek------------------ 107 (391)
.|.|.. | ...|.+...|.+|+-.-.-.--|+|++|+|.|.-..+|..|.|+|..+
T Consensus 267 dyiCqL--C-----K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r 339 (500)
T KOG3993|consen 267 DYICQL--C-----KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR 339 (500)
T ss_pred HHHHHH--H-----HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence 489999 9 899999999999975333333599999999999999999999986311
Q ss_pred ----------------ceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhh----cCCCCCcCCchhhhhcccc-cC---
Q 016352 108 ----------------EYKCD-CGTIFSRRDSFITHRAFCDALAEESQKAN----QGLNPQLGHVSEHISSMPI-NN--- 162 (391)
Q Consensus 108 ----------------~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h----~~~~p~f~~~~~L~~H~~~-h~--- 162 (391)
.|.|. |+|.|.++..|+.|+..|+.......+.- ....+.|.....+..|... +.
T Consensus 340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~ 419 (500)
T KOG3993|consen 340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGD 419 (500)
T ss_pred hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccc
Confidence 28999 99999999999999998866433221100 0000011111111122211 00
Q ss_pred -----------------CCCC-CCCccccccccCCCCCCccCCccccccCCchhHHhhhhccCCCc
Q 016352 163 -----------------HTEN-NNNPLAHHELMPMPPKPFNTMAAASIFESSNNNLQQSAAASASA 210 (391)
Q Consensus 163 -----------------~e~~-~~~~L~~H~~~htg~kp~~C~~C~~~F~~~~~L~~H~~~~~~s~ 210 (391)
+..+ .+..--.+.+.-..+.-|.|.+|...|.+...|.+|....+.+.
T Consensus 420 ~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse 485 (500)
T KOG3993|consen 420 EVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE 485 (500)
T ss_pred ceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence 0000 22222233333334567999999999999999999998877764
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.55 E-value=2.5e-08 Score=70.35 Aligned_cols=43 Identities=16% Similarity=0.427 Sum_probs=25.7
Q ss_pred eeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHH
Q 016352 46 VYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDW 97 (391)
Q Consensus 46 ~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L 97 (391)
-|.|++ | ++.|...+.|..|+++|+ ++|+|..|++.|.+.+.|
T Consensus 5 ~y~C~~--C-----GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 5 GYECPI--C-----GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred ccCcch--h-----CCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 356666 6 666666666666666665 456666666666554443
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.35 E-value=2.3e-07 Score=65.54 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=39.8
Q ss_pred CccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHH
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFI 124 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~ 124 (391)
.|+|++||+.|...+.|..|+++|. ++|+|. |++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence 4899999999999999999999965 899999 999999988876
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.30 E-value=4e-07 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.824 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCccCCcCccccCC
Q 016352 68 GIKKHFSRKHGEKKWKCEKCSKKYAV 93 (391)
Q Consensus 68 ~L~~H~~~H~~ekp~~C~~C~k~F~~ 93 (391)
+|.+|+++|++++||.|++|++.|..
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47889999999999999999998863
No 19
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.28 E-value=1.9e-07 Score=90.67 Aligned_cols=79 Identities=23% Similarity=0.534 Sum_probs=65.1
Q ss_pred eeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcC-------
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHG------- 78 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~------- 78 (391)
|.|..|...|.+-..|.+|.-.-. ....|+|++ | +|.|+-..+|..|+|+|..
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPE--C-----~KVFsCPANLASHRRWHKPR~eaa~a 327 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPE--C-----DKVFSCPANLASHRRWHKPRPEAAKA 327 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCc--c-----cccccCchhhhhhhcccCCchhhhhc
Confidence 889999999999999998853322 456799999 9 9999999999999999852
Q ss_pred --------------------------CCCccCCcCccccCChhHHHHHHhhc
Q 016352 79 --------------------------EKKWKCEKCSKKYAVQSDWKAHSKTC 104 (391)
Q Consensus 79 --------------------------ekp~~C~~C~k~F~~~~~L~~H~~~~ 104 (391)
+.-|.|.+|+|.|.++..|+.|+.+|
T Consensus 328 ~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlth 379 (500)
T KOG3993|consen 328 GSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTH 379 (500)
T ss_pred CCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhh
Confidence 11388999999999999999997663
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.25 E-value=9.6e-08 Score=57.51 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.1
Q ss_pred ccccccccCCCCCCccCCccccccCC
Q 016352 170 PLAHHELMPMPPKPFNTMAAASIFES 195 (391)
Q Consensus 170 ~L~~H~~~htg~kp~~C~~C~~~F~~ 195 (391)
+|..|+++|++++||+|++|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 36788899999999999999999974
No 21
>PHA00616 hypothetical protein
Probab=97.83 E-value=7.1e-06 Score=55.23 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=31.3
Q ss_pred ceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCC
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPE 51 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~ 51 (391)
||+|..||+.|..+++|..|++.|+ +++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence 7999999999999999999999998 788888765
No 22
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.65 E-value=2.9e-05 Score=73.22 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=50.7
Q ss_pred CCCceecC---CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCCCcCCchhhhhcccccCCCCCCCCccccccccCCCC
Q 016352 105 GTKEYKCD---CGTIFSRRDSFITHRAFCDALAEESQKANQGLNPQLGHVSEHISSMPINNHTENNNNPLAHHELMPMPP 181 (391)
Q Consensus 105 gek~~~C~---C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p~f~~~~~L~~H~~~h~~e~~~~~~L~~H~~~htg~ 181 (391)
++|||+|+ |.|.|.....|+.|+. |-... .++|.... -..|...-...
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~l------------hGH~~------------~~~~~~p~-----p~~~~~F~~~~ 396 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHML------------HGHQN------------QKLHENPS-----PEKMNIFSAKD 396 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhh------------ccccC------------cccCCCCC-----ccccccccccC
Confidence 56999997 9999999999999995 11100 11121111 11122233457
Q ss_pred CCccCCccccccCCchhHHhhhhcc
Q 016352 182 KPFNTMAAASIFESSNNNLQQSAAA 206 (391)
Q Consensus 182 kp~~C~~C~~~F~~~~~L~~H~~~~ 206 (391)
|||.|++|+|+|++..-|+.|+...
T Consensus 397 KPYrCevC~KRYKNlNGLKYHr~Hs 421 (423)
T COG5189 397 KPYRCEVCDKRYKNLNGLKYHRKHS 421 (423)
T ss_pred CceeccccchhhccCccceeccccc
Confidence 9999999999999999999998654
No 23
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.57 E-value=2.1e-05 Score=74.06 Aligned_cols=69 Identities=22% Similarity=0.542 Sum_probs=40.1
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc-CCCCccCC--cCccccCChhHHHHHHhhcCCCceecC-CCCccc
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFS 118 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~-~ekp~~C~--~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~ 118 (391)
.+|||+|++++| .|.+.+...|+-|+.--| ..+...-+ +--..| .-..|||.|+ |+|+|.
T Consensus 346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F-----------~~~~KPYrCevC~KRYK 409 (423)
T COG5189 346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF-----------SAKDKPYRCEVCDKRYK 409 (423)
T ss_pred cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccc-----------cccCCceeccccchhhc
Confidence 357888888778 888888888887765322 11110000 000011 0244777777 777777
Q ss_pred ChhHHHHHH
Q 016352 119 RRDSFITHR 127 (391)
Q Consensus 119 ~~~~L~~H~ 127 (391)
....|+.|+
T Consensus 410 NlNGLKYHr 418 (423)
T COG5189 410 NLNGLKYHR 418 (423)
T ss_pred cCccceecc
Confidence 777777776
No 24
>PHA00732 hypothetical protein
Probab=97.55 E-value=5.1e-05 Score=58.43 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=29.3
Q ss_pred ceeccccccccCChhhHHHHHHh-cCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRG-HNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH 77 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~ 77 (391)
||.|+.|++.|.+...|+.|++. |. ++.|+. | ++.|. .|..|.+++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------------~~~C~~--C-----gKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT----------------LTKCPV--C-----NKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC----------------CCccCC--C-----CCEeC---ChhhhhcccC
Confidence 56777777777777777777664 32 235776 6 67665 3556664443
No 25
>PHA00616 hypothetical protein
Probab=97.50 E-value=4.6e-05 Score=51.34 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=23.9
Q ss_pred eeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCc
Q 016352 46 VYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEK 86 (391)
Q Consensus 46 ~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~ 86 (391)
+|+|+. | |+.|..++.|.+|++.|++++++.|+.
T Consensus 1 pYqC~~--C-----G~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLR--C-----GGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccch--h-----hHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 466777 7 777777777777777777777777654
No 26
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.49 E-value=6.6e-05 Score=43.47 Aligned_cols=23 Identities=43% Similarity=0.908 Sum_probs=21.7
Q ss_pred eeccccccccCChhhHHHHHHhc
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H 28 (391)
|+|+.|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 79999999999999999999875
No 27
>PHA00732 hypothetical protein
Probab=97.37 E-value=0.00014 Score=55.98 Aligned_cols=45 Identities=29% Similarity=0.567 Sum_probs=33.4
Q ss_pred eeecCCCCCCCCCCCCccCCHHHHHHHHHH-hcCCCCccCCcCccccCChhHHHHHHhh
Q 016352 46 VYVCPEPSCVHHNPARALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKT 103 (391)
Q Consensus 46 ~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~ 103 (391)
+|.|+. | ++.|.....|..|++. |. ++.|+.|++.|. .+..|.++
T Consensus 1 py~C~~--C-----gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPI--C-----GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCC--C-----CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 467888 8 8888888888888874 44 357888888887 46777755
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.13 E-value=0.00067 Score=48.24 Aligned_cols=52 Identities=23% Similarity=0.525 Sum_probs=27.0
Q ss_pred ceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH 77 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~ 77 (391)
.|.|+.|++ .-+...|..|....+. ...+.+.|++ | ...+. ..|..|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~-----------~~~~~v~CPi--C-----~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHR-----------SESKNVVCPI--C-----SSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCc-----------CCCCCccCCC--c-----hhhhh--hHHHHHHHHhc
Confidence 366666666 3445566666544431 0233566666 6 44332 35666665544
No 29
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.02 E-value=0.00039 Score=41.88 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=23.6
Q ss_pred ceeccccccccCChhhHHHHHHhcC
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
||+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 7999999999999999999999885
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.01 E-value=0.00051 Score=39.67 Aligned_cols=24 Identities=42% Similarity=0.901 Sum_probs=20.3
Q ss_pred eeccccccccCChhhHHHHHHhcC
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
|.|++|++.|.+...|..|++.|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999998873
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.91 E-value=0.0006 Score=54.15 Aligned_cols=72 Identities=18% Similarity=0.434 Sum_probs=15.7
Q ss_pred eccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCc
Q 016352 7 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEK 86 (391)
Q Consensus 7 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~ 86 (391)
+|..|+..|.....|..|+...+. - ..+. ...+.....+..+.+... ...|.|..
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~-------------~---~~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~ 55 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHG-------------F---DIPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY 55 (100)
T ss_dssp -------------------------------------------------------------------------SSEEBSS
T ss_pred Cccccccccccccccccccccccc-------------c---cccc--------cccccccccccccccccc-CCCCCCCc
Confidence 478888888888888888755440 0 0011 111122223333332221 12567777
Q ss_pred CccccCChhHHHHHHhh
Q 016352 87 CSKKYAVQSDWKAHSKT 103 (391)
Q Consensus 87 C~k~F~~~~~L~~H~~~ 103 (391)
|++.|.....|..|++.
T Consensus 56 C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 56 CNKTFRSREALQEHMRS 72 (100)
T ss_dssp SS-EESSHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHcC
Confidence 77777777777777765
No 32
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.81 E-value=0.0021 Score=45.63 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=24.2
Q ss_pred eecCCCCCCCCCCCCccCCHHHHHHHHHHhcC-C-CCccCCcCccccCChhHHHHHHhh
Q 016352 47 YVCPEPSCVHHNPARALGDLTGIKKHFSRKHG-E-KKWKCEKCSKKYAVQSDWKAHSKT 103 (391)
Q Consensus 47 ~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~-e-kp~~C~~C~k~F~~~~~L~~H~~~ 103 (391)
|.|++ | ++. .+...|..|....+. + +.+.|++|...+. .+|..|+..
T Consensus 3 f~CP~--C-----~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 3 FTCPY--C-----GKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred cCCCC--C-----CCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence 55666 6 553 334556666544332 2 3456666665433 255556554
No 33
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.13 E-value=0.0051 Score=35.33 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=8.7
Q ss_pred CCccCCHHHHHHHHHH
Q 016352 60 ARALGDLTGIKKHFSR 75 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~~ 75 (391)
++.|.+...|..|++.
T Consensus 7 ~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 7 GKSFSSKSNLKRHMRR 22 (23)
T ss_dssp TEEESSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHhH
Confidence 5555555555555544
No 34
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.08 E-value=0.0038 Score=36.37 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=22.1
Q ss_pred eeccccccccCChhhHHHHHHhcC
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999774
No 35
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.019 Score=60.54 Aligned_cols=107 Identities=17% Similarity=0.355 Sum_probs=67.4
Q ss_pred eecccccccc---------------CChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCC-----CCCCccCC
Q 016352 6 FVCEICNKGF---------------QRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHH-----NPARALGD 65 (391)
Q Consensus 6 f~C~~C~k~F---------------~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~-----~~~k~F~~ 65 (391)
+.|.+|++.| .....|+.|++.-+ +.+.|.. |... .-.+.| +
T Consensus 100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------------~~~~c~l--C~~~~kif~~e~k~Y-t 161 (669)
T KOG2231|consen 100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------------KLHLCSL--CLQNLKIFINERKLY-T 161 (669)
T ss_pred hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------------hhhcccc--ccccceeeeeeeehe-h
Confidence 4566666665 36778999985443 2344444 2111 003333 4
Q ss_pred HHHHHHHHHHh-cCCCC----ccCCcCccccCChhHHHHHHhhcCCCceec---C-CCCcccChhHHHHHHHHh
Q 016352 66 LTGIKKHFSRK-HGEKK----WKCEKCSKKYAVQSDWKAHSKTCGTKEYKC---D-CGTIFSRRDSFITHRAFC 130 (391)
Q Consensus 66 ~~~L~~H~~~H-~~ekp----~~C~~C~k~F~~~~~L~~H~~~~gek~~~C---~-C~k~F~~~~~L~~H~~~h 130 (391)
...|..|+..- .+++- -.|..|...|.....|.+|++.+.+--+-| + ++..|.....|..|.+..
T Consensus 162 ~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~ 235 (669)
T KOG2231|consen 162 RAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKG 235 (669)
T ss_pred HHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhc
Confidence 56677776642 22222 469999999999999999998832222334 2 567888899999999843
No 36
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.75 E-value=0.0067 Score=48.03 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred ecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHHHH
Q 016352 48 VCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITH 126 (391)
Q Consensus 48 ~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H 126 (391)
+|.. | +..|.+...|..|+...++-..- ....+.....+..+.+..-...+.|. |++.|.+...|..|
T Consensus 1 ~C~~--C-----~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H 69 (100)
T PF12756_consen 1 QCLF--C-----DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH 69 (100)
T ss_dssp -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred Cccc--c-----ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence 4778 8 99999999999999876653211 11222234444444444223469999 99999999999999
Q ss_pred HHH
Q 016352 127 RAF 129 (391)
Q Consensus 127 ~~~ 129 (391)
++.
T Consensus 70 m~~ 72 (100)
T PF12756_consen 70 MRS 72 (100)
T ss_dssp HHH
T ss_pred HcC
Confidence 984
No 37
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.73 E-value=0.0062 Score=35.75 Aligned_cols=23 Identities=43% Similarity=0.980 Sum_probs=21.4
Q ss_pred eeccccccccCChhhHHHHHHhc
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H 28 (391)
|.|++|++.|.++..|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999865
No 38
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=95.37 E-value=0.017 Score=32.97 Aligned_cols=17 Identities=6% Similarity=0.378 Sum_probs=8.6
Q ss_pred CCccCCHHHHHHHHHHh
Q 016352 60 ARALGDLTGIKKHFSRK 76 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~~H 76 (391)
++.|.+...|+.|++.|
T Consensus 7 ~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 7 GKSFRSKSELRQHMRTH 23 (24)
T ss_dssp S-EESSHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHhh
Confidence 55555555555555544
No 39
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.09 E-value=0.0057 Score=60.92 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCccCCHHHHHHHHH--HhcCC--CCccCC--cCccccCChhHHHHHHhh-cCCCceec
Q 016352 60 ARALGDLTGIKKHFS--RKHGE--KKWKCE--KCSKKYAVQSDWKAHSKT-CGTKEYKC 111 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~--~H~~e--kp~~C~--~C~k~F~~~~~L~~H~~~-~gek~~~C 111 (391)
...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|... .+.+++.|
T Consensus 296 ~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T COG5048 296 NISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE 354 (467)
T ss_pred cCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence 555555555555555 55555 555555 466666555555555555 34444444
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.06 E-value=0.018 Score=39.82 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=8.0
Q ss_pred CccCCcCccccCChhHHHHHHhh
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKT 103 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~ 103 (391)
|-.|++|+..+.+..+|++|+..
T Consensus 24 PatCP~C~a~~~~srnLrRHle~ 46 (54)
T PF09237_consen 24 PATCPICGAVIRQSRNLRRHLEI 46 (54)
T ss_dssp -EE-TTT--EESSHHHHHHHHHH
T ss_pred CCCCCcchhhccchhhHHHHHHH
Confidence 33444444444444444444433
No 41
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.89 E-value=0.019 Score=34.33 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=9.6
Q ss_pred CCccCCHHHHHHHHHHh
Q 016352 60 ARALGDLTGIKKHFSRK 76 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~~H 76 (391)
++.|.+...|..|++.|
T Consensus 8 ~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 8 GKTFSSLSALREHKRSH 24 (27)
T ss_dssp TEEESSHHHHHHHHCTT
T ss_pred CCccCChhHHHHHhHHh
Confidence 55555555555555544
No 42
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.46 E-value=0.022 Score=54.79 Aligned_cols=125 Identities=19% Similarity=0.350 Sum_probs=84.0
Q ss_pred eeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCc---ccc------CChhHHHHHHhh-cCC---C-ceec
Q 016352 46 VYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCS---KKY------AVQSDWKAHSKT-CGT---K-EYKC 111 (391)
Q Consensus 46 ~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~---k~F------~~~~~L~~H~~~-~ge---k-~~~C 111 (391)
.|.|+..-| .........|+.|.+..|+ .+-|.+|- +.| .++..|..|... ..+ | .-.|
T Consensus 151 ~F~CP~skc-----~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C 223 (493)
T COG5236 151 SFKCPKSKC-----HRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC 223 (493)
T ss_pred HhcCCchhh-----hhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence 478887667 7777778899999988775 36677763 333 355677777765 222 2 2369
Q ss_pred C-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCC------CcCCchhhhhcccccCCCCCCCCccccccccCCCCCCc
Q 016352 112 D-CGTIFSRRDSFITHRAFCDALAEESQKANQGLNP------QLGHVSEHISSMPINNHTENNNNPLAHHELMPMPPKPF 184 (391)
Q Consensus 112 ~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p------~f~~~~~L~~H~~~h~~e~~~~~~L~~H~~~htg~kp~ 184 (391)
. |.+.|-.-+.|..|.|. .+.++|-+.+- .|.+-..|..|.+- -.|
T Consensus 224 ~FC~~~FYdDDEL~~HcR~------~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~---------------------~hy 276 (493)
T COG5236 224 IFCKIYFYDDDELRRHCRL------RHEACHICDMVGPIRYQYFKSYEDLEAHFRN---------------------AHY 276 (493)
T ss_pred hhccceecChHHHHHHHHh------hhhhhhhhhccCccchhhhhCHHHHHHHhhc---------------------Cce
Confidence 9 99999999999999983 34445544332 45666666666542 226
Q ss_pred cCCc--cc----cccCCchhHHhhhh
Q 016352 185 NTMA--AA----SIFESSNNNLQQSA 204 (391)
Q Consensus 185 ~C~~--C~----~~F~~~~~L~~H~~ 204 (391)
-|.+ |- ..|.....|..|+.
T Consensus 277 ~ct~qtc~~~k~~vf~~~~el~~h~~ 302 (493)
T COG5236 277 CCTFQTCRVGKCYVFPYHTELLEHLT 302 (493)
T ss_pred EEEEEEEecCcEEEeccHHHHHHHHH
Confidence 6654 32 47888888999983
No 43
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.02 E-value=0.078 Score=59.30 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhh--cCCCceecC-CCCcccCh
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT--CGTKEYKCD-CGTIFSRR 120 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~--~gek~~~C~-C~k~F~~~ 120 (391)
.+.|+|+. | ...|.....|..|+|..|-+-.- .+|. .+.....+.+ ... .+.++|.|. |...+...
T Consensus 463 ~kt~~cpk--c-----~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~ar-g~~~~~~~~p~~C~~C~~stttn 531 (1406)
T KOG1146|consen 463 FKTLKCPK--C-----NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLAR-GEVYRCPGKPYPCRACNYSTTTN 531 (1406)
T ss_pred cccccCCc--c-----chhhhhHHHhhhcccccccccch--hHhH-hccccccccc-cccccCCCCcccceeeeeeeecc
Confidence 36677777 7 77777777777777764332111 2221 1111111111 011 355889999 99999999
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcCCCCCcCCchhhhhcccccCCC----CCCCCcccccccc--CCCCCCccCCccccccC
Q 016352 121 DSFITHRAFCDALAEESQKANQGLNPQLGHVSEHISSMPINNHT----ENNNNPLAHHELM--PMPPKPFNTMAAASIFE 194 (391)
Q Consensus 121 ~~L~~H~~~h~~~~~~~~~~h~~~~p~f~~~~~L~~H~~~h~~e----~~~~~~L~~H~~~--htg~kp~~C~~C~~~F~ 194 (391)
..|..|+..+-.+.+....... .-.+++++... .+....+..-.-. ...+-.+.|.+|++.-.
T Consensus 532 g~LsihlqS~~h~~~lee~~~~-----------~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetn 600 (1406)
T KOG1146|consen 532 GNLSIHLQSDLHRNELEEAEEN-----------AGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETN 600 (1406)
T ss_pred hHHHHHHHHHhhHHHHHHHHhc-----------cccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhh
Confidence 9999999854222220000000 01111111111 1100111000000 11233589999999999
Q ss_pred CchhHHhhhhccCCC
Q 016352 195 SSNNNLQQSAAASAS 209 (391)
Q Consensus 195 ~~~~L~~H~~~~~~s 209 (391)
-..+|..|+......
T Consensus 601 iarnlrihmtss~~s 615 (1406)
T KOG1146|consen 601 IARNLRIHMTASPSS 615 (1406)
T ss_pred hhhccccccccCCCC
Confidence 999999999654443
No 44
>PRK04860 hypothetical protein; Provisional
Probab=93.82 E-value=0.032 Score=48.91 Aligned_cols=35 Identities=26% Similarity=0.747 Sum_probs=19.0
Q ss_pred CccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccC
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSR 119 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~ 119 (391)
+|.|. |++ ....+.+|.++ .++++|.|. |+..|..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF 155 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence 45555 554 44455555555 455556665 6555543
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=93.61 E-value=0.041 Score=31.90 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=18.7
Q ss_pred eeccccccccCChhhHHHHHHhcC
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
|+|+.|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 79999999998 999999998864
No 46
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.60 E-value=0.018 Score=34.55 Aligned_cols=23 Identities=30% Similarity=0.800 Sum_probs=20.8
Q ss_pred eeccccccccCChhhHHHHHHhc
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H 28 (391)
|.|..|++.|.+...|..|++..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 78999999999999999998653
No 47
>PRK04860 hypothetical protein; Provisional
Probab=93.39 E-value=0.045 Score=47.96 Aligned_cols=40 Identities=20% Similarity=0.606 Sum_probs=33.7
Q ss_pred ceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChh
Q 016352 45 RVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 95 (391)
Q Consensus 45 ~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~ 95 (391)
-+|.|. | ++ ....+.+|.++|+++++|+|..|++.|....
T Consensus 118 ~~Y~C~---C-----~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK---C-----QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC---C-----CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 579995 7 65 5667899999999999999999999987643
No 48
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.19 E-value=0.053 Score=31.66 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=8.8
Q ss_pred ecC-CCCcccChhHHHHHHH
Q 016352 110 KCD-CGTIFSRRDSFITHRA 128 (391)
Q Consensus 110 ~C~-C~k~F~~~~~L~~H~~ 128 (391)
.|. |++.|.+...|+.|++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHC
Confidence 444 4444444444444443
No 49
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.64 E-value=0.062 Score=32.21 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=20.2
Q ss_pred ccCCccccccCCchhHHhhhhc
Q 016352 184 FNTMAAASIFESSNNNLQQSAA 205 (391)
Q Consensus 184 ~~C~~C~~~F~~~~~L~~H~~~ 205 (391)
|.|..|++.|.+...|..|+..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999853
No 50
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.41 E-value=0.071 Score=51.37 Aligned_cols=126 Identities=15% Similarity=0.297 Sum_probs=77.0
Q ss_pred ceecc--ccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccC------CHHHHHHHHHHh
Q 016352 5 RFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALG------DLTGIKKHFSRK 76 (391)
Q Consensus 5 pf~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~------~~~~L~~H~~~H 76 (391)
.|.|+ .|.........|+.|.+..+ ..+.|.+ |.-+ .+.|. ++..|..|...-
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H---------------~~~~C~~--C~~n--Kk~F~~E~~lF~~~~Lr~H~~~G 211 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQH---------------GFVLCSE--CIGN--KKDFWNEIRLFRSSTLRDHKNGG 211 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhc---------------CcEEhHh--hhcC--cccCccceeeeecccccccccCC
Confidence 36675 36666666788999987664 2345655 5322 22232 234556665543
Q ss_pred cCCCCc----cCCcCccccCChhHHHHHHhhcCCCceecC-C----CCcccChhHHHHHHHHhhhhhhhhhhhhcCCCC-
Q 016352 77 HGEKKW----KCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-C----GTIFSRRDSFITHRAFCDALAEESQKANQGLNP- 146 (391)
Q Consensus 77 ~~ekp~----~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C----~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p- 146 (391)
..+.-| .|..|.+.|.....|.+|++.-.|+-|.|+ - ..-|....+|..|.+ +.|-...-
T Consensus 212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~----------~~hy~ct~q 281 (493)
T COG5236 212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFR----------NAHYCCTFQ 281 (493)
T ss_pred ccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhh----------cCceEEEEE
Confidence 333233 488899999998999999888446656664 2 245777888888886 22321111
Q ss_pred --------CcCCchhhhhccc
Q 016352 147 --------QLGHVSEHISSMP 159 (391)
Q Consensus 147 --------~f~~~~~L~~H~~ 159 (391)
.|....+|..|+.
T Consensus 282 tc~~~k~~vf~~~~el~~h~~ 302 (493)
T COG5236 282 TCRVGKCYVFPYHTELLEHLT 302 (493)
T ss_pred EEecCcEEEeccHHHHHHHHH
Confidence 5677777777764
No 51
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=92.23 E-value=0.19 Score=34.87 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=23.9
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCC
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKK 81 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp 81 (391)
.+.|..|++ | +..+....+|.+|+..+|+.||
T Consensus 21 S~~PatCP~--C-----~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPI--C-----GAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TT--T-------EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCc--c-----hhhccchhhHHHHHHHHhcccC
Confidence 577999999 9 9999999999999999988775
No 52
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.50 E-value=0.18 Score=28.94 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=8.7
Q ss_pred CCccCCHHHHHHHHHHh
Q 016352 60 ARALGDLTGIKKHFSRK 76 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~~H 76 (391)
++.|.....|..|++.|
T Consensus 7 ~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 7 GKVFKSKSALKEHMRTH 23 (26)
T ss_pred cchhCCHHHHHHHHHHh
Confidence 55555555555555443
No 53
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.34 Score=51.34 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHhcCCCCccCCcC---------ccccCChhHHHHHHhh--cCCCc----eecC-CCCcccChhHHHHHHH
Q 016352 65 DLTGIKKHFSRKHGEKKWKCEKC---------SKKYAVQSDWKAHSKT--CGTKE----YKCD-CGTIFSRRDSFITHRA 128 (391)
Q Consensus 65 ~~~~L~~H~~~H~~ekp~~C~~C---------~k~F~~~~~L~~H~~~--~gek~----~~C~-C~k~F~~~~~L~~H~~ 128 (391)
....|+.|++..|. .+.|..| .....++..|..|+.. .+++- -.|. |...|.....|.+|++
T Consensus 126 s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~ 203 (669)
T KOG2231|consen 126 SVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLR 203 (669)
T ss_pred HHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhc
Confidence 66789999865443 3555544 2334567788888876 32322 4699 9999999999999998
Q ss_pred HhhhhhhhhhhhhcCCCC-----CcCCchhhhhcccc
Q 016352 129 FCDALAEESQKANQGLNP-----QLGHVSEHISSMPI 160 (391)
Q Consensus 129 ~h~~~~~~~~~~h~~~~p-----~f~~~~~L~~H~~~ 160 (391)
.. ++.+|-+.+. -|..-..|..|.+.
T Consensus 204 ~~------h~~chfC~~~~~~neyy~~~~dLe~HfR~ 234 (669)
T KOG2231|consen 204 FD------HEFCHFCDYKTGQNEYYNDYDDLEEHFRK 234 (669)
T ss_pred cc------eeheeecCcccccchhcccchHHHHHhhh
Confidence 42 2233333211 45566666666553
No 54
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=90.91 E-value=0.18 Score=29.77 Aligned_cols=21 Identities=33% Similarity=0.852 Sum_probs=13.2
Q ss_pred eecC-CCCcccChhHHHHHHHHh
Q 016352 109 YKCD-CGTIFSRRDSFITHRAFC 130 (391)
Q Consensus 109 ~~C~-C~k~F~~~~~L~~H~~~h 130 (391)
..|+ |++.| ..+.|..|+.+|
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~C 24 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKIC 24 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHhc
Confidence 3566 77777 566666676543
No 55
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=0.088 Score=47.21 Aligned_cols=78 Identities=22% Similarity=0.517 Sum_probs=65.2
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhh-c----------CCCceec
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-C----------GTKEYKC 111 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~----------gek~~~C 111 (391)
.-+.+.|++.+| .+.|........|..+-++. .|..|.+.|.+..-|..|+.- | |..-|.|
T Consensus 76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C 147 (253)
T KOG4173|consen 76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC 147 (253)
T ss_pred ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence 345688999888 89998888888888665553 799999999999999999865 4 4556999
Q ss_pred C---CCCcccChhHHHHHHH
Q 016352 112 D---CGTIFSRRDSFITHRA 128 (391)
Q Consensus 112 ~---C~k~F~~~~~L~~H~~ 128 (391)
- |+..|.+......|+.
T Consensus 148 lvEgCt~KFkT~r~RkdH~I 167 (253)
T KOG4173|consen 148 LVEGCTEKFKTSRDRKDHMI 167 (253)
T ss_pred HHHhhhhhhhhhhhhhhHHH
Confidence 4 9999999999999996
No 56
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=90.83 E-value=0.17 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.769 Sum_probs=21.9
Q ss_pred CceeccccccccCChhhHHHHHHhc
Q 016352 4 NRFVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 4 kpf~C~~C~k~F~~~~~L~~H~~~H 28 (391)
.+|.|++|++.|.....+..|++..
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChH
Confidence 3689999999999999999998654
No 57
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=90.74 E-value=0.082 Score=59.16 Aligned_cols=120 Identities=16% Similarity=0.275 Sum_probs=88.0
Q ss_pred CceeccccccccCChhhHHHHHHhcC-CC--cccc--------cc-cccccCCceeecCCCCCCCCCCCCccCCHHHHHH
Q 016352 4 NRFVCEICNKGFQRDQNLQLHRRGHN-LP--WKLR--------QR-STTEIRKRVYVCPEPSCVHHNPARALGDLTGIKK 71 (391)
Q Consensus 4 kpf~C~~C~k~F~~~~~L~~H~~~H~-~~--~~~~--------~~-~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~ 71 (391)
|-|+|..|+..|+....|..|+|.-+ .. ..|. .+ ....-..++|.|.. | ...+..+.+|..
T Consensus 464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~--C-----~~stttng~Lsi 536 (1406)
T KOG1146|consen 464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRA--C-----NYSTTTNGNLSI 536 (1406)
T ss_pred ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCccccee--e-----eeeeecchHHHH
Confidence 56899999999999999999999733 10 0010 00 11112457899999 8 899999999999
Q ss_pred HHHHh--cC-----------------------------------------CCCccCCcCccccCChhHHHHHHhh-cC-C
Q 016352 72 HFSRK--HG-----------------------------------------EKKWKCEKCSKKYAVQSDWKAHSKT-CG-T 106 (391)
Q Consensus 72 H~~~H--~~-----------------------------------------ekp~~C~~C~k~F~~~~~L~~H~~~-~g-e 106 (391)
|+..- .. +..|.|..|+.......+|..|+.. +. .
T Consensus 537 hlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~ 616 (1406)
T KOG1146|consen 537 HLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSS 616 (1406)
T ss_pred HHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCC
Confidence 97642 10 1249999999999999999999988 43 3
Q ss_pred CceecC-CCCcccChhHHHHHHHHh
Q 016352 107 KEYKCD-CGTIFSRRDSFITHRAFC 130 (391)
Q Consensus 107 k~~~C~-C~k~F~~~~~L~~H~~~h 130 (391)
.|..|. |.-.+.....+..+.+.+
T Consensus 617 ~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 617 PPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred ChHHHhhhcchhhccccccCcCCCC
Confidence 448888 888888888777777644
No 58
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=88.63 E-value=0.5 Score=27.21 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=8.1
Q ss_pred CCccCCHHHHHHHHHHhc
Q 016352 60 ARALGDLTGIKKHFSRKH 77 (391)
Q Consensus 60 ~k~F~~~~~L~~H~~~H~ 77 (391)
..... ...|.+|++.++
T Consensus 7 ~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 7 SYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp S-EES-HHHHHHHHHHHH
T ss_pred CCcCC-HHHHHHHHHhhC
Confidence 44444 555555555543
No 59
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=86.12 E-value=0.57 Score=27.60 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=17.9
Q ss_pred eeccccccccCChhhHHHHHHh
Q 016352 6 FVCEICNKGFQRDQNLQLHRRG 27 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~ 27 (391)
.+|..|++.| ....|.+|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 67889999764
No 60
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=85.51 E-value=0.25 Score=48.97 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=64.5
Q ss_pred CC--Cceecc--ccccccCChhhHHHHHHhcCCC--ccccc-----------------c---cccccCCceeecCCCCCC
Q 016352 2 AT--NRFVCE--ICNKGFQRDQNLQLHRRGHNLP--WKLRQ-----------------R---STTEIRKRVYVCPEPSCV 55 (391)
Q Consensus 2 g~--kpf~C~--~C~k~F~~~~~L~~H~~~H~~~--~~~~~-----------------~---~~~~~~~~~~~C~~~~C~ 55 (391)
++ +|+.|. .|++.|.+...+..|...|... ..+.. . .........+.|....|
T Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 394 (467)
T COG5048 316 GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSC- 394 (467)
T ss_pred cccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhccCccCCccccccccch-
Confidence 55 899999 7999999999999999888711 11000 0 00000122333433334
Q ss_pred CCCCCCccCCHHHHHHHHHHhcCCC--CccCCcCccccCChhHHHHHHhhcCCC-ceecCCCCcccChhH
Q 016352 56 HHNPARALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYAVQSDWKAHSKTCGTK-EYKCDCGTIFSRRDS 122 (391)
Q Consensus 56 ~~~~~k~F~~~~~L~~H~~~H~~ek--p~~C~~C~k~F~~~~~L~~H~~~~gek-~~~C~C~k~F~~~~~ 122 (391)
...+.....+..|...|...+ .+.|..|.+.|.....+..|++.+... ++.|.+.+.|.....
T Consensus 395 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (467)
T COG5048 395 ----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLD 460 (467)
T ss_pred ----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCceeeccccccchhhh
Confidence 555555555566655555544 345566777777777777777663333 333334444444333
No 61
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=85.08 E-value=0.66 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=11.6
Q ss_pred ccCCcCccccCChhHHHHHHhh
Q 016352 82 WKCEKCSKKYAVQSDWKAHSKT 103 (391)
Q Consensus 82 ~~C~~C~k~F~~~~~L~~H~~~ 103 (391)
|.|+.|++.|.....+..|+..
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred eEccccCCccCCHHHHHHHHCh
Confidence 4455555555555555555443
No 62
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=83.39 E-value=5.1 Score=38.98 Aligned_cols=54 Identities=24% Similarity=0.497 Sum_probs=37.3
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcC------C----------------CCccCCcCccccCChhHHHHHH
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHG------E----------------KKWKCEKCSKKYAVQSDWKAHS 101 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~------e----------------kp~~C~~C~k~F~~~~~L~~H~ 101 (391)
....+|-. |. ......++....|+-.-|+ + ..++|-.|.|.|..+..|+.||
T Consensus 142 ~fslqClF--Cn----~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHM 215 (423)
T KOG2482|consen 142 IFSLQCLF--CN----NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHM 215 (423)
T ss_pred eeeeEEEE--ec----chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHH
Confidence 34567888 73 3444566777777643332 0 1378999999999999999999
Q ss_pred hh
Q 016352 102 KT 103 (391)
Q Consensus 102 ~~ 103 (391)
+.
T Consensus 216 rk 217 (423)
T KOG2482|consen 216 RK 217 (423)
T ss_pred Hh
Confidence 86
No 63
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=82.70 E-value=0.38 Score=44.17 Aligned_cols=40 Identities=23% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHHHH
Q 016352 84 CEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITH 126 (391)
Q Consensus 84 C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H 126 (391)
|-+|++.|.....|.+|++. |.|+|. |.|...+-..|..|
T Consensus 13 cwycnrefddekiliqhqka---khfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceee
Confidence 55555555555555555543 235555 55555444444444
No 64
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.21 E-value=1.1 Score=41.63 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCCccCCcCccccCChhHHHHHHh
Q 016352 69 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK 102 (391)
Q Consensus 69 L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~ 102 (391)
+.+|+.+.++ ..|.|-.|++.|.. ..++.|..
T Consensus 18 vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 18 VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred hHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 4445554444 34555555555554 44455544
No 65
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.97 E-value=1.3 Score=36.22 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=19.4
Q ss_pred ccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccCh
Q 016352 82 WKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRR 120 (391)
Q Consensus 82 ~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~ 120 (391)
..|+.||++|... +..|..|+ ||..|.-.
T Consensus 10 R~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence 4677777777653 33667777 77777655
No 66
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=78.15 E-value=0.96 Score=31.98 Aligned_cols=24 Identities=38% Similarity=0.940 Sum_probs=12.9
Q ss_pred CCCceecC-CCCcccChhHHHHHHH
Q 016352 105 GTKEYKCD-CGTIFSRRDSFITHRA 128 (391)
Q Consensus 105 gek~~~C~-C~k~F~~~~~L~~H~~ 128 (391)
||..+.|+ |++.|..+.++.+|..
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhh
Confidence 45555555 5555555555555554
No 67
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=77.71 E-value=1.1 Score=31.67 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCceeccccccccCChhhHHHHHHhcC
Q 016352 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 2 g~kpf~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
||.-+.|+.|++.|.......+|++..+
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 6777899999999999999999987654
No 68
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=75.09 E-value=0.87 Score=41.92 Aligned_cols=44 Identities=27% Similarity=0.451 Sum_probs=36.7
Q ss_pred ecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHh
Q 016352 48 VCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK 102 (391)
Q Consensus 48 ~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~ 102 (391)
.|.+ | .+.|....-|.+|++.. -|+|.+|.|...+-..|..|.-
T Consensus 12 wcwy--c-----nrefddekiliqhqkak----hfkchichkkl~sgpglsihcm 55 (341)
T KOG2893|consen 12 WCWY--C-----NREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCM 55 (341)
T ss_pred eeee--c-----ccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehh
Confidence 5878 9 99999999999998754 4999999998888777777743
No 69
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.01 E-value=2.7 Score=34.31 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=23.9
Q ss_pred CCCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCH
Q 016352 2 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDL 66 (391)
Q Consensus 2 g~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~ 66 (391)
|+| ..|..||++|... .+.|.+|+. | |..|.-.
T Consensus 7 GtK-R~Cp~CG~kFYDL------------------------nk~PivCP~--C-----G~~~~~~ 39 (108)
T PF09538_consen 7 GTK-RTCPSCGAKFYDL------------------------NKDPIVCPK--C-----GTEFPPE 39 (108)
T ss_pred CCc-ccCCCCcchhccC------------------------CCCCccCCC--C-----CCccCcc
Confidence 444 4799999999863 346888999 8 7766544
No 70
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=68.34 E-value=7.4 Score=37.91 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=22.0
Q ss_pred ceeccccccccCChhhHHHHHHhc
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H 28 (391)
.+.|-.|.|.|..+..|+.|||..
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK 218 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKK 218 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhc
Confidence 588999999999999999999865
No 71
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.46 E-value=3.8 Score=34.23 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=24.8
Q ss_pred CccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHH
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFI 124 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~ 124 (391)
...|+.|+++|... +..|..|+ |+..|.-...++
T Consensus 9 Kr~Cp~cg~kFYDL----------nk~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNTGSKFYDL----------NRRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCcCcccccc----------CCCCccCCCcCCccCcchhhc
Confidence 36789999988764 44788899 998886664433
No 72
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=66.25 E-value=14 Score=36.63 Aligned_cols=63 Identities=21% Similarity=0.489 Sum_probs=43.3
Q ss_pred ceeccccccccCChhhHHHHHHhc--C---------CCcc----c---------ccccccccCCceeecCCCCCCCCCCC
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGH--N---------LPWK----L---------RQRSTTEIRKRVYVCPEPSCVHHNPA 60 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H--~---------~~~~----~---------~~~~~~~~~~~~~~C~~~~C~~~~~~ 60 (391)
-|.|.-|...|.+...-+.|.++- . .|-. + .........+.++.|.. | .
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~--c-----~ 75 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEA--C-----N 75 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHH--h-----h
Confidence 389999999999988888887654 1 1111 0 01111234567899999 9 9
Q ss_pred CccCCHHHHHHHHH
Q 016352 61 RALGDLTGIKKHFS 74 (391)
Q Consensus 61 k~F~~~~~L~~H~~ 74 (391)
+.|........|+.
T Consensus 76 k~~~s~~a~~~hl~ 89 (390)
T KOG2785|consen 76 KSFASPKAHENHLK 89 (390)
T ss_pred ccccChhhHHHHHH
Confidence 99998888777754
No 73
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.52 E-value=1.7 Score=40.02 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.2
Q ss_pred eecC-CCCcccCh
Q 016352 109 YKCD-CGTIFSRR 120 (391)
Q Consensus 109 ~~C~-C~k~F~~~ 120 (391)
+.|+ |+..|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5799 99887755
No 74
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=63.74 E-value=1.9 Score=37.54 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.0
Q ss_pred ceecC-CCCcccChhH
Q 016352 108 EYKCD-CGTIFSRRDS 122 (391)
Q Consensus 108 ~~~C~-C~k~F~~~~~ 122 (391)
.|+|+ |+++|.+...
T Consensus 28 ~~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 28 RRECLACGKRFTTFER 43 (154)
T ss_pred eeeccccCCcceEeEe
Confidence 47888 8888877544
No 75
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=63.24 E-value=6.5 Score=26.20 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=16.6
Q ss_pred CCceeccccccccCCh----hhHHHHHHh
Q 016352 3 TNRFVCEICNKGFQRD----QNLQLHRRG 27 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~----~~L~~H~~~ 27 (391)
.+..+|..|++.+... .+|.+|++.
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 4567899999998764 789999843
No 76
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.59 E-value=4.5 Score=36.55 Aligned_cols=79 Identities=24% Similarity=0.497 Sum_probs=58.7
Q ss_pred CCceeccc--cccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc---
Q 016352 3 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH--- 77 (391)
Q Consensus 3 ~kpf~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~--- 77 (391)
.+.|.|.+ |-..|........|..+-+ .-.|.. | .+.|.+...|..|+...|
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h----------------~~sCs~--C-----~r~~Pt~hLLd~HI~E~HDs~ 133 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLH----------------GNSCSF--C-----KRAFPTGHLLDAHILEWHDSL 133 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcc----------------cchhHH--H-----HHhCCchhhhhHHHHHHHHHH
Confidence 34577765 6677777666666654333 237999 9 999999999999976433
Q ss_pred -------CCCCccC--CcCccccCChhHHHHHHhh-c
Q 016352 78 -------GEKKWKC--EKCSKKYAVQSDWKAHSKT-C 104 (391)
Q Consensus 78 -------~ekp~~C--~~C~k~F~~~~~L~~H~~~-~ 104 (391)
|..-|.| +.|+..|.+...-+.|+-. |
T Consensus 134 Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 134 FQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred HHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 4556899 5599999999999999877 5
No 77
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=58.88 E-value=6.3 Score=24.73 Aligned_cols=10 Identities=30% Similarity=1.076 Sum_probs=6.3
Q ss_pred CCccCCcCcc
Q 016352 80 KKWKCEKCSK 89 (391)
Q Consensus 80 kp~~C~~C~k 89 (391)
.+|.|++|+.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4666777653
No 78
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=57.49 E-value=3.1 Score=38.26 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=11.1
Q ss_pred CceecC-CCCcccChhHHHHHHHH
Q 016352 107 KEYKCD-CGTIFSRRDSFITHRAF 129 (391)
Q Consensus 107 k~~~C~-C~k~F~~~~~L~~H~~~ 129 (391)
..|.|. |+|.|.-..-.+.|+..
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHhh
Confidence 345555 55555555555555543
No 79
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=57.47 E-value=30 Score=27.95 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=18.6
Q ss_pred ceeccccccccCChhhHHHHHHhc
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H 28 (391)
-..|..|...... .++..|++..
T Consensus 11 vlIC~~C~~av~~-~~v~~HL~~~ 33 (109)
T PF12013_consen 11 VLICRQCQYAVQP-SEVESHLRKR 33 (109)
T ss_pred EEEeCCCCcccCc-hHHHHHHHHh
Confidence 3579999998876 8899999844
No 80
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=55.85 E-value=16 Score=38.28 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCCceecC-CCCcccChhHHHHHHHHhhh
Q 016352 105 GTKEYKCD-CGTIFSRRDSFITHRAFCDA 132 (391)
Q Consensus 105 gek~~~C~-C~k~F~~~~~L~~H~~~h~~ 132 (391)
..++-.|. ||.+|........|+.+|..
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhhh
Confidence 34567888 88888888888888877754
No 81
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=55.48 E-value=25 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=19.2
Q ss_pred eec----C-CCCcccChhHHHHHHHH
Q 016352 109 YKC----D-CGTIFSRRDSFITHRAF 129 (391)
Q Consensus 109 ~~C----~-C~k~F~~~~~L~~H~~~ 129 (391)
|.| . |+..+.+...++.|.+.
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~ 106 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRK 106 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHH
Confidence 889 8 99999999999999984
No 82
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=55.31 E-value=1.7 Score=42.31 Aligned_cols=70 Identities=26% Similarity=0.570 Sum_probs=38.8
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhh-cCCCceecC-CCCcccChh
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT-CGTKEYKCD-CGTIFSRRD 121 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~gek~~~C~-C~k~F~~~~ 121 (391)
.++|+|+.+.| .+.+.....|+.|...-+ |. -.-.-...-.-|.-. ...|+|.|+ |.+++....
T Consensus 347 ~~~~~~~vp~~-----~~~~~n~ng~~~~~~~~h------~s---~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~ 412 (442)
T KOG4124|consen 347 DKPYKCPVPNC-----DKAYKNQNGLKYHKLHGH------CS---PITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLN 412 (442)
T ss_pred cCCCCCCCCcc-----hhhcccCcceeeccccCc------CC---CCCCCCCCCCCcceeeeccCcccChhhhhhhccCC
Confidence 47889998888 888888777777654322 10 000000011112212 244677777 777776666
Q ss_pred HHHHHH
Q 016352 122 SFITHR 127 (391)
Q Consensus 122 ~L~~H~ 127 (391)
.|.-|+
T Consensus 413 ~l~~~~ 418 (442)
T KOG4124|consen 413 GLKYHR 418 (442)
T ss_pred CCCcee
Confidence 666555
No 83
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=54.93 E-value=9.7 Score=24.48 Aligned_cols=31 Identities=26% Similarity=0.819 Sum_probs=17.4
Q ss_pred cCCcCccccCChhHHHHHHhhcCCCceecC-CCCcc
Q 016352 83 KCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIF 117 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F 117 (391)
.|+.|+..|...+.... -.....+|. |+..|
T Consensus 4 ~Cp~C~~~y~i~d~~ip----~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIP----PKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCC----CCCcEEECCCCCCEe
Confidence 56777777766554211 223346677 77665
No 84
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.89 E-value=6.6 Score=24.91 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=4.4
Q ss_pred CccCCcCc
Q 016352 81 KWKCEKCS 88 (391)
Q Consensus 81 p~~C~~C~ 88 (391)
|..|++|+
T Consensus 18 p~~CP~Cg 25 (34)
T cd00729 18 PEKCPICG 25 (34)
T ss_pred CCcCcCCC
Confidence 45555554
No 85
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=54.58 E-value=7.2 Score=30.34 Aligned_cols=12 Identities=42% Similarity=1.093 Sum_probs=6.4
Q ss_pred CceecC-CCCccc
Q 016352 107 KEYKCD-CGTIFS 118 (391)
Q Consensus 107 k~~~C~-C~k~F~ 118 (391)
.-|.|. |+..|.
T Consensus 52 GIW~C~kCg~~fA 64 (89)
T COG1997 52 GIWKCRKCGAKFA 64 (89)
T ss_pred CeEEcCCCCCeec
Confidence 345555 555554
No 86
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=53.23 E-value=9.5 Score=26.25 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=19.0
Q ss_pred eeccccccccCCh-----hhHHHHHH-hc
Q 016352 6 FVCEICNKGFQRD-----QNLQLHRR-GH 28 (391)
Q Consensus 6 f~C~~C~k~F~~~-----~~L~~H~~-~H 28 (391)
-.|..|++.+... ++|.+|++ .|
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 4699999998765 68999998 55
No 87
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=52.80 E-value=10 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.905 Sum_probs=14.8
Q ss_pred cCCcCccccCChhHHHHHHhhcCCCceecC-CCCcc
Q 016352 83 KCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIF 117 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F 117 (391)
.|+.|+..|.....-.. .+.+..+|. |+..|
T Consensus 4 ~CP~C~~~f~v~~~~l~----~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLP----AGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcc----cCCcEEECCCCCcEe
Confidence 45666655555443110 123345566 66555
No 88
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=52.75 E-value=3.5 Score=43.92 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=23.5
Q ss_pred CCccCCccccccCCchhHHhhhhccCCC
Q 016352 182 KPFNTMAAASIFESSNNNLQQSAAASAS 209 (391)
Q Consensus 182 kp~~C~~C~~~F~~~~~L~~H~~~~~~s 209 (391)
.-|.|..|+|.|....++..|++.+.-.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3599999999999999999999765544
No 89
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=52.69 E-value=7.7 Score=34.18 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=5.8
Q ss_pred CccCCcCcccc
Q 016352 81 KWKCEKCSKKY 91 (391)
Q Consensus 81 p~~C~~C~k~F 91 (391)
.|+|.+||..+
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 35666665443
No 90
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.37 E-value=17 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccC
Q 016352 78 GEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSR 119 (391)
Q Consensus 78 ~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~ 119 (391)
...-|.|+.|+..|+....+. .-|.|+ ||.....
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME--------LNFTCPRCGAMLDY 140 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH--------cCCcCCCCCCEeee
Confidence 345688888888888777664 248888 8865443
No 91
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=47.34 E-value=5.3 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=23.2
Q ss_pred ceeccccccccCChhhHHHHHHhcC
Q 016352 5 RFVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
-|.|.+|+|.|-...++..||+.|.
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHH
Confidence 4899999999999999999999995
No 92
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=46.20 E-value=24 Score=30.26 Aligned_cols=38 Identities=21% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccC
Q 016352 79 EKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSR 119 (391)
Q Consensus 79 ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~ 119 (391)
...|.|+.|++.|.....+.. ......|.|+ |+.....
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQL---LDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHh---cCCCCcEECCCCCCEEEE
Confidence 346889999988886544332 0113338898 9876543
No 93
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=45.48 E-value=18 Score=30.70 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=20.6
Q ss_pred CCceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCC
Q 016352 106 TKEYKCD-CGTIFSRRDSFITHRAFCDALAEESQKANQGLN 145 (391)
Q Consensus 106 ek~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~ 145 (391)
+.-..|- |||.|.. |++|++.|+++..+.||..-|..
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp~eYR~kwGlp 107 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTPEEYRAKWGLP 107 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-HHHHHHHTT-G
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCHHHHHHHhCcC
Confidence 3446787 8888865 58888887777777666554433
No 94
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=45.45 E-value=14 Score=21.90 Aligned_cols=20 Identities=5% Similarity=-0.197 Sum_probs=16.7
Q ss_pred ccCCccccccCCchhHHhhhh
Q 016352 184 FNTMAAASIFESSNNNLQQSA 204 (391)
Q Consensus 184 ~~C~~C~~~F~~~~~L~~H~~ 204 (391)
..|++|++.+ ....+.+|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4699999999 6678888875
No 95
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.38 E-value=17 Score=32.38 Aligned_cols=33 Identities=15% Similarity=0.665 Sum_probs=24.2
Q ss_pred CCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccC
Q 016352 79 EKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSR 119 (391)
Q Consensus 79 ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~ 119 (391)
..-|.|+.|+..|+....+. .-|.|+ ||.....
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~--------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME--------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh--------cCCcCCCCCCCCee
Confidence 35688999998888876653 358899 9866554
No 96
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=42.98 E-value=42 Score=33.37 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=39.9
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CC---CcccC
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CG---TIFSR 119 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~---k~F~~ 119 (391)
..|-.|-. | ++.+.+...-..||..+|+- |.-+. ........|..-+..--..-+.|- |+ +.|.+
T Consensus 164 ~~Pt~CLf--C-----~~~~k~~e~~~~HM~~~Hgf--fIPdr--eYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~s 232 (390)
T KOG2785|consen 164 LIPTDCLF--C-----DKKSKSLEENLKHMFKEHGF--FIPDR--EYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSS 232 (390)
T ss_pred cCCcceee--c-----CCCcccHHHHHHHHhhccCC--cCCch--HhhhchhHHHHHHHHHhccCceEEEeccccCcccc
Confidence 34456777 7 77777777777788777762 11110 011222233332222111335666 66 77777
Q ss_pred hhHHHHHHH
Q 016352 120 RDSFITHRA 128 (391)
Q Consensus 120 ~~~L~~H~~ 128 (391)
-...+.||+
T Consensus 233 leavr~HM~ 241 (390)
T KOG2785|consen 233 LEAVRAHMR 241 (390)
T ss_pred cHHHHHHHh
Confidence 777777775
No 97
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.32 E-value=35 Score=28.01 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=40.2
Q ss_pred CceeccccccccCChhhHHHHHHhcC-CCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCc
Q 016352 4 NRFVCEICNKGFQRDQNLQLHRRGHN-LPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (391)
Q Consensus 4 kpf~C~~C~k~F~~~~~L~~H~~~H~-~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~ 82 (391)
-|-+|.+|+-.......|.+- .|+ -|.+--.............|-- | .+.|....... ...-.....|
T Consensus 14 LP~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~--C-----~~~f~~~~~~~--~~~~~~~~~y 82 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFG--C-----QGPFPKPPVSP--FDELKDSHRY 82 (112)
T ss_pred CCCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccC--c-----CCCCCCccccc--ccccccccce
Confidence 366778888777777777653 343 1111000000000111223555 6 55554432100 0001122356
Q ss_pred cCCcCccccCChhHHHHHHh
Q 016352 83 KCEKCSKKYAVQSDWKAHSK 102 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~ 102 (391)
+|+.|...|-..-+.-.|..
T Consensus 83 ~C~~C~~~FC~dCD~fiHe~ 102 (112)
T TIGR00622 83 VCAVCKNVFCVDCDVFVHES 102 (112)
T ss_pred eCCCCCCccccccchhhhhh
Confidence 77777777766666555543
No 98
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=40.17 E-value=29 Score=32.71 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred cCCCceecC-CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCCCcCCchhhhhcccccCCCCCCCCccccccc----cC
Q 016352 104 CGTKEYKCD-CGTIFSRRDSFITHRAFCDALAEESQKANQGLNPQLGHVSEHISSMPINNHTENNNNPLAHHEL----MP 178 (391)
Q Consensus 104 ~gek~~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p~f~~~~~L~~H~~~h~~e~~~~~~L~~H~~----~h 178 (391)
||.+.|+|. |.. |.-.+.--.|+..|+.+..+.+++-+..+- .+.+-|+--+--. ..|.+ ..
T Consensus 138 hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNrl--Gq~sCLRCK~cfC----------ddHvrrKg~ky 204 (314)
T PF06524_consen 138 HGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNRL--GQYSCLRCKICFC----------DDHVRRKGFKY 204 (314)
T ss_pred CCCeEEEeecCCC-eeeccchhhhhhhhhhhhcccccccccccc--cchhhhheeeeeh----------hhhhhhccccc
Confidence 677888888 775 444455566888888887777776665543 2222222111000 01111 11
Q ss_pred CCCCCccCCccccccCCchhH
Q 016352 179 MPPKPFNTMAAASIFESSNNN 199 (391)
Q Consensus 179 tg~kp~~C~~C~~~F~~~~~L 199 (391)
...++++|+.|+.-...-..|
T Consensus 205 ~k~k~~PCPKCg~et~eTkdL 225 (314)
T PF06524_consen 205 EKGKPIPCPKCGYETQETKDL 225 (314)
T ss_pred ccCCCCCCCCCCCcccccccc
Confidence 234789999998776655444
No 99
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=39.83 E-value=10 Score=37.08 Aligned_cols=27 Identities=4% Similarity=-0.031 Sum_probs=21.1
Q ss_pred cCCCCCCccCCccc-cccCCchhHHhhh
Q 016352 177 MPMPPKPFNTMAAA-SIFESSNNNLQQS 203 (391)
Q Consensus 177 ~htg~kp~~C~~C~-~~F~~~~~L~~H~ 203 (391)
.|.-.+.|.|.+|+ +.+.-+..+.+|.
T Consensus 368 lhgLd~ef~CEICgNyvy~GR~~FdrHF 395 (470)
T COG5188 368 LHGLDIEFECEICGNYVYYGRDRFDRHF 395 (470)
T ss_pred hcCCCcceeeeecccccccchHHHHhhh
Confidence 45567889999999 7777777777776
No 100
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.80 E-value=14 Score=34.55 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=37.9
Q ss_pred CccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHHHHHH
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITHRA 128 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H~~ 128 (391)
.|.|..||.... +..+.+|+..+...-|.|- |++.|.+ .++..|..
T Consensus 3 ~FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence 378999998765 5678889999444779999 9999998 88899985
No 101
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=39.71 E-value=10 Score=37.11 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=48.0
Q ss_pred CCceecC---CCCcccChhHHHHHHHHhhhhhhhhhhhhcCCCCCcCCchhhhhcccccCCCCCCCCccccccccCCCCC
Q 016352 106 TKEYKCD---CGTIFSRRDSFITHRAFCDALAEESQKANQGLNPQLGHVSEHISSMPINNHTENNNNPLAHHELMPMPPK 182 (391)
Q Consensus 106 ek~~~C~---C~k~F~~~~~L~~H~~~h~~~~~~~~~~h~~~~p~f~~~~~L~~H~~~h~~e~~~~~~L~~H~~~htg~k 182 (391)
.++|+|. |.+.+.....|+.|.. |....+ +.++.+ .-..|.-.....|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~------------~~h~s~-------------i~~~s~----~~~ph~~~~~~nk 397 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKL------------HGHCSP-------------ITTPTP----APIPHQGFVVENK 397 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccc------------cCcCCC-------------CCCCCC----CCCCcceeeeccC
Confidence 4789996 9999999998888874 111111 111111 1112222333568
Q ss_pred CccCCccccccCCchhHHhhhhccCCC
Q 016352 183 PFNTMAAASIFESSNNNLQQSAAASAS 209 (391)
Q Consensus 183 p~~C~~C~~~F~~~~~L~~H~~~~~~s 209 (391)
+|.|++|.++++....|.-|....+-.
T Consensus 398 ~~r~~i~~~~~k~~~~l~~~~~~~~~~ 424 (442)
T KOG4124|consen 398 PYRCEVCSKRYKNLNGLKYHRTHSHLQ 424 (442)
T ss_pred cccChhhhhhhccCCCCCceeehhhhh
Confidence 999999999999998888877554433
No 102
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=39.26 E-value=31 Score=34.86 Aligned_cols=39 Identities=26% Similarity=0.607 Sum_probs=26.8
Q ss_pred cCCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcc
Q 016352 77 HGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIF 117 (391)
Q Consensus 77 ~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F 117 (391)
+...-|.|+.|.+.|.....+.-- .-..-.|.|. |+-..
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L~--~~~~~~F~C~~C~gel 163 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQLL--DNETGEFHCENCGGEL 163 (436)
T ss_pred cccccccCCccccchhhhHHHHhh--cccCceEEEecCCCch
Confidence 344579999999999987765421 1234569998 87543
No 103
>PF14353 CpXC: CpXC protein
Probab=38.90 E-value=31 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=9.2
Q ss_pred eecC-CCCcccChhHHHHH
Q 016352 109 YKCD-CGTIFSRRDSFITH 126 (391)
Q Consensus 109 ~~C~-C~k~F~~~~~L~~H 126 (391)
|.|+ ||..|.-...+..|
T Consensus 39 ~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 39 FTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred EECCCCCCceecCCCEEEE
Confidence 5666 66655544443333
No 104
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.42 E-value=16 Score=29.75 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=15.8
Q ss_pred cCCcCccccCChhHHHHHHhhcCCCceecC-CCCccc
Q 016352 83 KCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFS 118 (391)
Q Consensus 83 ~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~ 118 (391)
.|+.|++.|... ...|..|+ |+++|+
T Consensus 11 idPetg~KFYDL----------NrdPiVsPytG~s~P 37 (129)
T COG4530 11 IDPETGKKFYDL----------NRDPIVSPYTGKSYP 37 (129)
T ss_pred cCccccchhhcc----------CCCccccCcccccch
Confidence 466666666542 34566677 777773
No 105
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.29 E-value=35 Score=28.00 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=49.9
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHHhc-------CCCCc-------cCCcCccccCChhHHHHHHhhcCCCce
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKH-------GEKKW-------KCEKCSKKYAVQSDWKAHSKTCGTKEY 109 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~-------~ekp~-------~C~~C~k~F~~~~~L~~H~~~~gek~~ 109 (391)
+-|.+|+. | +-.......|.+-. |+ .|-+| .|--|.+.|........- .......|
T Consensus 13 ~LP~~Cpi--C-----gLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~-~~~~~~~y 82 (112)
T TIGR00622 13 ELPVECPI--C-----GLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD-ELKDSHRY 82 (112)
T ss_pred CCCCcCCc--C-----CCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCccccccc-ccccccce
Confidence 45788999 9 88887777766532 22 11122 388899999865321100 01234579
Q ss_pred ecC-CCCcccChhHHHHHHHH
Q 016352 110 KCD-CGTIFSRRDSFITHRAF 129 (391)
Q Consensus 110 ~C~-C~k~F~~~~~L~~H~~~ 129 (391)
.|+ |...|-..-+.-.|..+
T Consensus 83 ~C~~C~~~FC~dCD~fiHe~L 103 (112)
T TIGR00622 83 VCAVCKNVFCVDCDVFVHESL 103 (112)
T ss_pred eCCCCCCccccccchhhhhhc
Confidence 999 99999988888888864
No 106
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.14 E-value=6 Score=36.36 Aligned_cols=44 Identities=16% Similarity=0.434 Sum_probs=29.2
Q ss_pred CceeecCCCCCCCCCCCCccCCHHHHHHHHHH---hc-------CCC-----CccCCcCccccCCh
Q 016352 44 KRVYVCPEPSCVHHNPARALGDLTGIKKHFSR---KH-------GEK-----KWKCEKCSKKYAVQ 94 (391)
Q Consensus 44 ~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~---H~-------~ek-----p~~C~~C~k~F~~~ 94 (391)
++.++||. | ++.|.++.-.....+. .+ +.. .+.|+.||.+|...
T Consensus 3 ~k~~~CPv--C-----~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPV--C-----GKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCC--C-----CCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 46789999 9 9999877544433332 11 122 26899999888754
No 107
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=36.00 E-value=23 Score=32.56 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=21.1
Q ss_pred CCCceeccccccccCChhhHHHHHHhcC
Q 016352 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 2 g~kpf~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
++..|.|..|+|.|+-..-...|+..-+
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcC
Confidence 4567999999999999999999987654
No 108
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.41 E-value=22 Score=29.77 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=9.6
Q ss_pred eeccccccccCC
Q 016352 6 FVCEICNKGFQR 17 (391)
Q Consensus 6 f~C~~C~k~F~~ 17 (391)
..|..||++|..
T Consensus 10 r~Cp~cg~kFYD 21 (129)
T TIGR02300 10 RICPNTGSKFYD 21 (129)
T ss_pred ccCCCcCccccc
Confidence 478888888875
No 109
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=33.08 E-value=48 Score=23.93 Aligned_cols=8 Identities=50% Similarity=1.651 Sum_probs=4.5
Q ss_pred CceecC-CC
Q 016352 107 KEYKCD-CG 114 (391)
Q Consensus 107 k~~~C~-C~ 114 (391)
.+|+|+ ||
T Consensus 49 ~~Y~Cp~CG 57 (61)
T COG2888 49 NPYRCPKCG 57 (61)
T ss_pred CceECCCcC
Confidence 456665 55
No 110
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.85 E-value=26 Score=31.19 Aligned_cols=35 Identities=14% Similarity=0.518 Sum_probs=27.6
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCC
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 93 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~ 93 (391)
...-|.|+. | +..|+...++. .-|.|+.||.....
T Consensus 114 ~~~~Y~Cp~--C-----~~rytf~eA~~---------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 114 NNMFFFCPN--C-----HIRFTFDEAME---------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCCEEECCC--C-----CcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence 456899999 9 89998887653 36999999976654
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.59 E-value=22 Score=38.77 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=16.9
Q ss_pred ccccccccCCCCCCccCCccccc
Q 016352 170 PLAHHELMPMPPKPFNTMAAASI 192 (391)
Q Consensus 170 ~L~~H~~~htg~kp~~C~~C~~~ 192 (391)
.|..|.--+....|..|+.|+..
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCC
Confidence 45555555667789999999876
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=31.92 E-value=20 Score=30.24 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=9.0
Q ss_pred ecC-CCCcccChhH
Q 016352 110 KCD-CGTIFSRRDS 122 (391)
Q Consensus 110 ~C~-C~k~F~~~~~ 122 (391)
+|+ |..+|.+.+.
T Consensus 123 vCPvCkTSFKss~~ 136 (140)
T PF05290_consen 123 VCPVCKTSFKSSSS 136 (140)
T ss_pred CCCccccccccccc
Confidence 578 8888776543
No 113
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=31.39 E-value=24 Score=34.57 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=19.2
Q ss_pred CCccCCcCccccCChhHHHHHHhh-cCCCc
Q 016352 80 KKWKCEKCSKKYAVQSDWKAHSKT-CGTKE 108 (391)
Q Consensus 80 kp~~C~~C~k~F~~~~~L~~H~~~-~gek~ 108 (391)
..|.|++|++.-.....+..|+.. |-+-.
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~ 107 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEAS 107 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCcccC
Confidence 357777777776667777777766 65443
No 114
>PHA00626 hypothetical protein
Probab=31.22 E-value=24 Score=25.08 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=12.9
Q ss_pred CceeccccccccCCh
Q 016352 4 NRFVCEICNKGFQRD 18 (391)
Q Consensus 4 kpf~C~~C~k~F~~~ 18 (391)
..|+|..|+..|+..
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 579999999999854
No 115
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.76 E-value=39 Score=24.38 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=5.3
Q ss_pred CceecC-CCC
Q 016352 107 KEYKCD-CGT 115 (391)
Q Consensus 107 k~~~C~-C~k 115 (391)
.+|.|+ ||.
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 456666 663
No 116
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=30.50 E-value=65 Score=28.05 Aligned_cols=35 Identities=11% Similarity=0.449 Sum_probs=28.0
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCC
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 93 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~ 93 (391)
...-|.|+. | +..|+...++. .-|.|+.||.....
T Consensus 106 ~~~~Y~Cp~--c-----~~r~tf~eA~~---------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 106 NNMFFICPN--M-----CVRFTFNEAME---------LNFTCPRCGAMLDY 140 (158)
T ss_pred CCCeEECCC--C-----CcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence 567899999 9 89998888774 36999999976543
No 117
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=30.45 E-value=26 Score=27.59 Aligned_cols=13 Identities=15% Similarity=0.644 Sum_probs=7.6
Q ss_pred CceecC-CCCcccC
Q 016352 107 KEYKCD-CGTIFSR 119 (391)
Q Consensus 107 k~~~C~-C~k~F~~ 119 (391)
-.|.|. |++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 446666 6666653
No 118
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=30.01 E-value=32 Score=30.31 Aligned_cols=25 Identities=36% Similarity=0.882 Sum_probs=19.9
Q ss_pred ceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCcc
Q 016352 45 RVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSK 89 (391)
Q Consensus 45 ~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k 89 (391)
+.|.|++ | |.. +-++.|.+|++|+-
T Consensus 133 ~~~vC~v--C-----Gy~-------------~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPV--C-----GYT-------------HEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCC--C-----CCc-------------ccCCCCCcCCCCCC
Confidence 3899999 9 643 45688999999983
No 119
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=29.45 E-value=41 Score=31.72 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=13.4
Q ss_pred CCCceecC-CCCcccChhHHH
Q 016352 105 GTKEYKCD-CGTIFSRRDSFI 124 (391)
Q Consensus 105 gek~~~C~-C~k~F~~~~~L~ 124 (391)
..++++|+ |+.....-..|.
T Consensus 206 k~k~~PCPKCg~et~eTkdLS 226 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLS 226 (314)
T ss_pred cCCCCCCCCCCCcccccccce
Confidence 44789999 997665544443
No 120
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.06 E-value=28 Score=20.66 Aligned_cols=11 Identities=18% Similarity=-0.124 Sum_probs=8.8
Q ss_pred ccCCccccccC
Q 016352 184 FNTMAAASIFE 194 (391)
Q Consensus 184 ~~C~~C~~~F~ 194 (391)
-.|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 46889998885
No 121
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=27.94 E-value=59 Score=30.46 Aligned_cols=59 Identities=24% Similarity=0.502 Sum_probs=38.3
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCChhHHHHHHhhcCCCceecC-CCCcccCh
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRR 120 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~ 120 (391)
..+.|.|.. | ...+ -.++-.....-+|..|.+.|.--..= +..|.-.|.|+ |+..|...
T Consensus 109 ~drqFaC~~--C-----d~~W--------wRrvp~rKeVSRCr~C~~rYDPVP~d----kmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 109 VDRQFACSS--C-----DHMW--------WRRVPQRKEVSRCRKCRKRYDPVPCD----KMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cceeeeccc--c-----chHH--------HhccCcccccccccccccccCCCccc----cccceeeeecccccccchhh
Confidence 347899999 8 4322 12344444567899999888654321 11455669999 99999754
No 122
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=27.90 E-value=19 Score=27.06 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=8.6
Q ss_pred CCceecC---CCCcccCh
Q 016352 106 TKEYKCD---CGTIFSRR 120 (391)
Q Consensus 106 ek~~~C~---C~k~F~~~ 120 (391)
+.-+.|. |+.+|...
T Consensus 25 ~~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 25 ERYHQCQNVNCSATFITY 42 (72)
T ss_pred eeeeecCCCCCCCEEEEE
Confidence 4445664 66666554
No 123
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.66 E-value=40 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=12.5
Q ss_pred eeccccccccCChhhH
Q 016352 6 FVCEICNKGFQRDQNL 21 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L 21 (391)
+.|+.|+..|.-....
T Consensus 3 ~~CP~C~~~~~v~~~~ 18 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ 18 (38)
T ss_pred EECCCCCCEEEeCHHH
Confidence 6899999988866553
No 124
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=27.00 E-value=29 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=7.6
Q ss_pred CceecC-CCCcccC
Q 016352 107 KEYKCD-CGTIFSR 119 (391)
Q Consensus 107 k~~~C~-C~k~F~~ 119 (391)
-.|.|. |++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 346666 6666653
No 125
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=26.71 E-value=12 Score=24.56 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=5.7
Q ss_pred ceecC-CCCcc
Q 016352 108 EYKCD-CGTIF 117 (391)
Q Consensus 108 ~~~C~-C~k~F 117 (391)
-|.|. |+..|
T Consensus 28 fy~C~~C~~~w 38 (40)
T smart00440 28 FYVCTKCGHRW 38 (40)
T ss_pred EEEeCCCCCEe
Confidence 36666 66554
No 126
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=26.46 E-value=28 Score=34.84 Aligned_cols=116 Identities=16% Similarity=0.318 Sum_probs=66.3
Q ss_pred ceec--cccccccCChhhHHHHHHhcCCCcccccccc-cccCCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCC--
Q 016352 5 RFVC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRST-TEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGE-- 79 (391)
Q Consensus 5 pf~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~-~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~e-- 79 (391)
=|.| +.|+..+-.+..+.+|++.|..... .... ...-...|.|-...| .+ +.+....|...|+..
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdn--sL~dgf~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~n 340 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDN--SLIDGFHRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKRN 340 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHhhccc--ccccchhhcCccchhhhccc-----Cc---ccccccccCcccccccc
Confidence 3566 4688888889999999999961100 0000 000112367766557 66 455566677666532
Q ss_pred -----CCccCCcCc--cccCChhHHHHHHhh-cCC----C--------------------ceecC---CCCcccChhHHH
Q 016352 80 -----KKWKCEKCS--KKYAVQSDWKAHSKT-CGT----K--------------------EYKCD---CGTIFSRRDSFI 124 (391)
Q Consensus 80 -----kp~~C~~C~--k~F~~~~~L~~H~~~-~ge----k--------------------~~~C~---C~k~F~~~~~L~ 124 (391)
.-|.|..|+ ..|.....-..|.+- -++ + .+-|. |+.+|...+...
T Consensus 341 ~GfrrthfhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~ 420 (480)
T KOG4377|consen 341 NGFRRTHFHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMA 420 (480)
T ss_pred CceecceeEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhh
Confidence 236787766 455433333333322 111 1 13454 899999999999
Q ss_pred HHHHHh
Q 016352 125 THRAFC 130 (391)
Q Consensus 125 ~H~~~h 130 (391)
.|.+.|
T Consensus 421 shkrkh 426 (480)
T KOG4377|consen 421 SHKRKH 426 (480)
T ss_pred hhhhhh
Confidence 898854
No 127
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.59 E-value=23 Score=23.48 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=12.6
Q ss_pred ceeccccccccCChhh
Q 016352 5 RFVCEICNKGFQRDQN 20 (391)
Q Consensus 5 pf~C~~C~k~F~~~~~ 20 (391)
-|+|..||..|.....
T Consensus 5 ey~C~~Cg~~fe~~~~ 20 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQS 20 (42)
T ss_pred EEEeCCCCCEEEEEEE
Confidence 4899999998876544
No 128
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.51 E-value=59 Score=27.85 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=27.5
Q ss_pred CCceeecCCCCCCCCCCCCccCCHHHHHHHHHHhcCCCCccCCcCccccCC
Q 016352 43 RKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 93 (391)
Q Consensus 43 ~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~ 93 (391)
....|.|+. | +..|.....+.. .. .+..|.|+.|+.....
T Consensus 96 ~~~~Y~Cp~--C-----~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 96 NNAYYKCPN--C-----QSKYTFLEANQL---LD-MDGTFTCPRCGEELEE 135 (147)
T ss_pred CCcEEECcC--C-----CCEeeHHHHHHh---cC-CCCcEECCCCCCEEEE
Confidence 567899999 9 898886554332 11 1344999999987643
No 129
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=25.07 E-value=32 Score=29.05 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.7
Q ss_pred eccccccccCChhhHHHHHHhcC
Q 016352 7 VCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 7 ~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
.|-+|||.|+ +|++|+.+|.
T Consensus 78 icLEDGkkfK---SLKRHL~t~~ 97 (148)
T COG4957 78 ICLEDGKKFK---SLKRHLTTHY 97 (148)
T ss_pred EEeccCcchH---HHHHHHhccc
Confidence 6999999996 4999999986
No 130
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=24.64 E-value=36 Score=22.28 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=12.4
Q ss_pred ceeccccccccCCh
Q 016352 5 RFVCEICNKGFQRD 18 (391)
Q Consensus 5 pf~C~~C~k~F~~~ 18 (391)
||+|..|++.|-.+
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 89999999999864
No 131
>PF15269 zf-C2H2_7: Zinc-finger
Probab=24.52 E-value=49 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.2
Q ss_pred eeccccccccCChhhHHHHHHhc
Q 016352 6 FVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 6 f~C~~C~k~F~~~~~L~~H~~~H 28 (391)
|+|-.|..+..-++.|..|++.-
T Consensus 21 ykcfqcpftc~~kshl~nhmky~ 43 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKYS 43 (54)
T ss_pred ceeecCCcccchHHHHHHHHHHH
Confidence 67999999999999999998765
No 132
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=24.31 E-value=22 Score=28.00 Aligned_cols=11 Identities=45% Similarity=1.235 Sum_probs=6.6
Q ss_pred ceecC-CCCccc
Q 016352 108 EYKCD-CGTIFS 118 (391)
Q Consensus 108 ~~~C~-C~k~F~ 118 (391)
-|.|. |++.|.
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 36666 666654
No 133
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.61 E-value=19 Score=25.21 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=16.6
Q ss_pred CceeccccccccCChhhHHHHHHhcC
Q 016352 4 NRFVCEICNKGFQRDQNLQLHRRGHN 29 (391)
Q Consensus 4 kpf~C~~C~k~F~~~~~L~~H~~~H~ 29 (391)
.+|+|+.|...|--.=.+..|...|.
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CeEECCCCCCccccCcChhhhccccC
Confidence 57999999999998888888877775
No 134
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=23.34 E-value=49 Score=27.47 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCceeccccccccCChhhHHHHHHhc
Q 016352 3 TNRFVCEICNKGFQRDQNLQLHRRGH 28 (391)
Q Consensus 3 ~kpf~C~~C~k~F~~~~~L~~H~~~H 28 (391)
.--|-|-+|.+-|.+...|+.|.++-
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK 80 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTK 80 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhcc
Confidence 34589999999999999999998764
No 135
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.11 E-value=38 Score=19.81 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=8.4
Q ss_pred Cceecccccc
Q 016352 4 NRFVCEICNK 13 (391)
Q Consensus 4 kpf~C~~C~k 13 (391)
.+|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4799999985
No 136
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=22.41 E-value=37 Score=26.70 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=7.7
Q ss_pred CceecC-CCCcccC
Q 016352 107 KEYKCD-CGTIFSR 119 (391)
Q Consensus 107 k~~~C~-C~k~F~~ 119 (391)
-.|.|. |++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 346666 6666654
No 137
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.11 E-value=73 Score=35.86 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=7.1
Q ss_pred ceecC-CCCcccC
Q 016352 108 EYKCD-CGTIFSR 119 (391)
Q Consensus 108 ~~~C~-C~k~F~~ 119 (391)
+|.|+ |+..-..
T Consensus 663 ~y~CPKCG~El~~ 675 (1121)
T PRK04023 663 EDECEKCGREPTP 675 (1121)
T ss_pred CCcCCCCCCCCCc
Confidence 46677 7755443
No 138
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.50 E-value=48 Score=32.03 Aligned_cols=46 Identities=15% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCcCccccCChhHHHHHHhhcCCCceecC-CCCcccChhHHHHHHHHh
Q 016352 84 CEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGTIFSRRDSFITHRAFC 130 (391)
Q Consensus 84 C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k~F~~~~~L~~H~~~h 130 (391)
|-.|.-.|.....-..-.. ...-.|.|+ |...|-..-..-.|...|
T Consensus 365 Cf~CQ~~fp~~~~~~~~~~-~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDES-TSSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred ceeccCCCCCCCCCccccc-ccccceechhhhhhhhhhhHHHHHHHHh
Confidence 7778877876543222111 233569999 999999988888888754
No 139
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=21.29 E-value=71 Score=28.66 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=12.6
Q ss_pred CceeecCC--CCCCCCCCCCccCCHHHHHHHHHHhcCC
Q 016352 44 KRVYVCPE--PSCVHHNPARALGDLTGIKKHFSRKHGE 79 (391)
Q Consensus 44 ~~~~~C~~--~~C~~~~~~k~F~~~~~L~~H~~~H~~e 79 (391)
-+|+.|+. .+| ........|..|.+..|.+
T Consensus 42 ~~p~~CP~~~~~C------~~~G~~~~l~~Hl~~~H~~ 73 (198)
T PF03145_consen 42 FRPCSCPFPGSGC------DWQGSYKELLDHLRDKHSW 73 (198)
T ss_dssp TSEEE-SSSSTT---------EEECCCHHHHHHHHTTT
T ss_pred CcCCcCCCCCCCc------cccCCHHHHHHHHHHHCCC
Confidence 45666665 344 1222233455565554443
No 140
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=21.05 E-value=61 Score=21.72 Aligned_cols=14 Identities=14% Similarity=0.619 Sum_probs=10.6
Q ss_pred CceeccccccccCC
Q 016352 4 NRFVCEICNKGFQR 17 (391)
Q Consensus 4 kpf~C~~C~k~F~~ 17 (391)
..|.|..||..|..
T Consensus 2 ~~y~C~~CG~~~~~ 15 (46)
T PRK00398 2 AEYKCARCGREVEL 15 (46)
T ss_pred CEEECCCCCCEEEE
Confidence 35888888887764
No 141
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.91 E-value=44 Score=21.44 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.3
Q ss_pred CceeccccccccCChh
Q 016352 4 NRFVCEICNKGFQRDQ 19 (391)
Q Consensus 4 kpf~C~~C~k~F~~~~ 19 (391)
--|+|..|++.|....
T Consensus 4 Y~y~C~~Cg~~fe~~~ 19 (41)
T smart00834 4 YEYRCEDCGHTFEVLQ 19 (41)
T ss_pred EEEEcCCCCCEEEEEE
Confidence 3589999999887543
No 142
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.76 E-value=28 Score=23.91 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.4
Q ss_pred CCccCCcCcc
Q 016352 80 KKWKCEKCSK 89 (391)
Q Consensus 80 kp~~C~~C~k 89 (391)
..-.|+.|+.
T Consensus 25 ~~~~CP~Cg~ 34 (52)
T TIGR02605 25 PLATCPECGG 34 (52)
T ss_pred CCCCCCCCCC
Confidence 3445666654
No 143
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.74 E-value=31 Score=35.02 Aligned_cols=59 Identities=20% Similarity=0.464 Sum_probs=32.4
Q ss_pred CCCceeccccccccCChhhHHHHHHhcCCCcccccccccccCCceeecCCCCCCCCCCCCccCCHHHHHHHH-HHhcCCC
Q 016352 2 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHF-SRKHGEK 80 (391)
Q Consensus 2 g~kpf~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~k~F~~~~~L~~H~-~~H~~ek 80 (391)
|+.-|+|..|- +..|.|.| .-..|.|+- - ++.+.+...-.+|. +.|+=..
T Consensus 70 gKQGfQCqvC~--------fvvHkrCh--------------efVtF~CPG--a-----dkg~dtDdpr~kHkf~~~tYss 120 (683)
T KOG0696|consen 70 GKQGFQCQVCC--------FVVHKRCH--------------EFVTFSCPG--A-----DKGPDTDDPRSKHKFKIHTYSS 120 (683)
T ss_pred ccCceeeeEEe--------ehhhhhhc--------------ceEEEECCC--C-----CCCCCCCCcccccceeeeecCC
Confidence 34456666663 45677777 345666765 4 55555554444442 3444444
Q ss_pred CccCCcCcc
Q 016352 81 KWKCEKCSK 89 (391)
Q Consensus 81 p~~C~~C~k 89 (391)
|--|+.||-
T Consensus 121 PTFCDhCGs 129 (683)
T KOG0696|consen 121 PTFCDHCGS 129 (683)
T ss_pred CchhhhHHH
Confidence 555666663
No 144
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=20.37 E-value=46 Score=32.18 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=20.8
Q ss_pred CCCccCCccccccCCchhHHhhhhc
Q 016352 181 PKPFNTMAAASIFESSNNNLQQSAA 205 (391)
Q Consensus 181 ~kp~~C~~C~~~F~~~~~L~~H~~~ 205 (391)
.-.|.|+.|...|-...+...|...
T Consensus 386 s~rY~Ce~CK~~FC~dCdvfiHe~L 410 (421)
T COG5151 386 SGRYQCELCKSTFCSDCDVFIHETL 410 (421)
T ss_pred ccceechhhhhhhhhhhHHHHHHHH
Confidence 3469999999999999888888743
No 145
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=20.37 E-value=56 Score=20.62 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.7
Q ss_pred eecccccCCCC
Q 016352 338 VDFMGIGGSRT 348 (391)
Q Consensus 338 ~d~~g~~~~~~ 348 (391)
+||||.+||+.
T Consensus 12 ~D~lgsasga~ 22 (35)
T PF13134_consen 12 MDFLGSASGAA 22 (35)
T ss_pred hhhhhcccchH
Confidence 39999998754
No 146
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.22 E-value=1.1e+02 Score=34.67 Aligned_cols=13 Identities=0% Similarity=-0.314 Sum_probs=8.0
Q ss_pred CccCCccccccCC
Q 016352 183 PFNTMAAASIFES 195 (391)
Q Consensus 183 p~~C~~C~~~F~~ 195 (391)
+|.|+.|+..-..
T Consensus 663 ~y~CPKCG~El~~ 675 (1121)
T PRK04023 663 EDECEKCGREPTP 675 (1121)
T ss_pred CCcCCCCCCCCCc
Confidence 3667777765443
No 147
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.05 E-value=1.1e+02 Score=20.55 Aligned_cols=27 Identities=19% Similarity=0.640 Sum_probs=14.3
Q ss_pred CccCCcCccccCChhHHHHHHhhcCCCceecC-CCC
Q 016352 81 KWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCD-CGT 115 (391)
Q Consensus 81 p~~C~~C~k~F~~~~~L~~H~~~~gek~~~C~-C~k 115 (391)
.+.|+.|+.. .. ........|.|. |.+
T Consensus 18 g~~CP~Cg~~--~~------~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 18 GFVCPHCGST--KH------YRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCCe--ee------EEeCCCCeEECCCCCC
Confidence 3668887754 10 111124567777 764
Done!