Query 016353
Match_columns 391
No_of_seqs 209 out of 1385
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 9.3E-54 2E-58 400.1 28.2 288 44-360 1-298 (299)
2 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 1.9E-53 4.2E-58 406.1 30.0 300 44-355 1-309 (309)
3 cd08571 GDPD_SHV3_plant Glycer 100.0 1.7E-53 3.6E-58 405.3 28.4 294 44-361 1-302 (302)
4 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 3.8E-53 8.2E-58 408.1 27.9 305 42-364 15-356 (356)
5 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 2.5E-52 5.5E-57 397.2 28.8 294 44-361 1-300 (300)
6 PRK11143 glpQ glycerophosphodi 100.0 1.2E-51 2.5E-56 399.3 30.5 320 7-364 4-353 (355)
7 cd08559 GDPD_periplasmic_GlpQ_ 100.0 3.6E-50 7.8E-55 382.8 26.7 277 44-355 1-296 (296)
8 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1E-49 2.2E-54 382.0 27.6 289 44-356 1-318 (318)
9 cd08580 GDPD_Rv2277c_like Glyc 100.0 7.6E-51 1.6E-55 378.5 18.2 249 44-358 1-263 (263)
10 cd08601 GDPD_SaGlpQ_like Glyce 100.0 5.9E-49 1.3E-53 367.8 25.5 246 45-362 2-255 (256)
11 cd08609 GDPD_GDE3 Glycerophosp 100.0 1.4E-48 3.1E-53 371.6 26.0 262 43-383 26-300 (315)
12 cd08612 GDPD_GDE4 Glycerophosp 100.0 1.2E-48 2.6E-53 373.0 25.1 265 36-363 19-299 (300)
13 cd08610 GDPD_GDE6 Glycerophosp 100.0 1.1E-48 2.4E-53 372.2 24.2 271 40-386 19-304 (316)
14 PRK09454 ugpQ cytoplasmic glyc 100.0 2.6E-48 5.7E-53 361.6 25.4 239 43-362 7-246 (249)
15 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 5.8E-48 1.3E-52 359.4 23.4 238 43-353 1-251 (252)
16 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.8E-47 4E-52 352.0 24.6 229 46-355 1-229 (229)
17 cd08608 GDPD_GDE2 Glycerophosp 100.0 1.8E-47 4E-52 367.5 25.1 263 43-381 1-276 (351)
18 cd08581 GDPD_like_1 Glyceropho 100.0 2E-47 4.3E-52 351.0 23.5 227 46-355 1-229 (229)
19 cd08565 GDPD_pAtGDE_like Glyce 100.0 1.4E-47 3.1E-52 353.2 22.5 233 46-358 1-234 (235)
20 cd08582 GDPD_like_2 Glyceropho 100.0 7.7E-47 1.7E-51 348.7 24.4 231 46-357 1-233 (233)
21 cd08563 GDPD_TtGDE_like Glycer 100.0 9.2E-47 2E-51 347.5 24.4 230 44-355 1-230 (230)
22 cd08575 GDPD_GDE4_like Glycero 100.0 4.5E-47 9.7E-52 356.0 20.9 250 44-358 1-264 (264)
23 cd08564 GDPD_GsGDE_like Glycer 100.0 1.4E-46 3.1E-51 353.2 24.0 241 42-362 2-264 (265)
24 cd08568 GDPD_TmGDE_like Glycer 100.0 1.1E-46 2.3E-51 346.1 22.4 223 45-357 1-225 (226)
25 cd08579 GDPD_memb_like Glycero 100.0 7.4E-47 1.6E-51 345.9 20.8 220 46-355 1-220 (220)
26 cd08573 GDPD_GDE1 Glycerophosp 100.0 8.5E-46 1.8E-50 345.9 24.7 242 46-354 1-257 (258)
27 cd08570 GDPD_YPL206cp_fungi Gl 100.0 1.9E-45 4.1E-50 339.6 24.6 229 46-355 1-234 (234)
28 cd08567 GDPD_SpGDE_like Glycer 100.0 1.8E-45 3.8E-50 345.7 23.5 253 45-357 2-263 (263)
29 cd08606 GDPD_YPL110cp_fungi Gl 100.0 2.1E-45 4.7E-50 349.1 23.8 260 44-363 2-285 (286)
30 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.8E-45 3.9E-50 342.9 22.0 238 46-362 1-249 (249)
31 cd08607 GDPD_GDE5 Glycerophosp 100.0 6.1E-45 1.3E-49 346.8 23.2 265 45-355 1-290 (290)
32 cd08572 GDPD_GDE5_like Glycero 100.0 6.1E-45 1.3E-49 345.8 21.0 264 45-355 1-293 (293)
33 cd08605 GDPD_GDE5_like_1_plant 100.0 4E-44 8.6E-49 339.7 22.8 252 46-355 2-282 (282)
34 cd08566 GDPD_AtGDE_like Glycer 100.0 7.2E-44 1.6E-48 329.8 23.2 237 45-355 1-240 (240)
35 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 1.5E-42 3.3E-47 320.8 22.3 231 46-356 1-236 (237)
36 cd08585 GDPD_like_3 Glyceropho 100.0 2.4E-42 5.3E-47 318.5 22.6 228 44-352 4-236 (237)
37 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.3E-41 2.9E-46 318.8 22.2 243 40-358 20-307 (309)
38 COG0584 UgpQ Glycerophosphoryl 100.0 1.3E-40 2.9E-45 311.7 22.8 249 43-363 5-255 (257)
39 PF03009 GDPD: Glycerophosphor 100.0 2.4E-40 5.2E-45 308.0 18.7 248 49-357 1-256 (256)
40 cd08556 GDPD Glycerophosphodie 100.0 1.8E-36 3.9E-41 270.1 20.3 188 46-354 1-189 (189)
41 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 6.9E-35 1.5E-39 258.1 19.0 174 46-354 1-179 (179)
42 cd08578 GDPD_NUC-2_fungi Putat 100.0 1.6E-27 3.5E-32 224.8 19.6 250 60-355 17-297 (300)
43 KOG2258 Glycerophosphoryl dies 99.9 2.9E-27 6.2E-32 227.9 11.4 266 43-367 68-334 (341)
44 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 3.8E-23 8.2E-28 180.8 16.7 187 46-357 1-191 (192)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.6 8.5E-15 1.8E-19 133.7 12.1 211 64-354 15-228 (228)
46 cd08576 GDPD_like_SMaseD_PLD G 99.5 3E-13 6.5E-18 124.5 15.4 55 298-366 191-250 (265)
47 cd08592 PI-PLCc_gamma Catalyti 98.7 7.3E-08 1.6E-12 87.0 10.3 42 54-95 25-66 (229)
48 PF13653 GDPD_2: Glycerophosph 98.7 1.4E-08 3E-13 61.2 2.2 30 313-356 1-30 (30)
49 cd08627 PI-PLCc_gamma1 Catalyt 98.6 2.2E-07 4.7E-12 83.6 10.1 42 54-95 25-66 (229)
50 cd08597 PI-PLCc_PRIP_metazoa C 98.2 1.2E-05 2.6E-10 74.2 9.8 41 55-95 26-66 (260)
51 KOG2421 Predicted starch-bindi 98.0 5.7E-07 1.2E-11 89.2 -1.6 65 36-100 317-388 (417)
52 smart00148 PLCXc Phospholipase 98.0 5.9E-05 1.3E-09 63.4 9.5 43 53-95 23-65 (135)
53 cd08594 PI-PLCc_eta Catalytic 97.5 0.00084 1.8E-08 60.7 10.1 41 55-95 26-66 (227)
54 cd08633 PI-PLCc_eta2 Catalytic 97.5 0.00085 1.8E-08 61.6 9.8 41 55-95 26-66 (254)
55 cd08596 PI-PLCc_epsilon Cataly 97.4 0.0012 2.7E-08 60.7 9.9 41 55-95 26-66 (254)
56 cd08632 PI-PLCc_eta1 Catalytic 97.4 0.0013 2.7E-08 60.4 9.8 40 56-95 27-66 (253)
57 cd08558 PI-PLCc_eukaryota Cata 97.4 0.0015 3.1E-08 59.3 10.0 41 55-95 26-66 (226)
58 cd08631 PI-PLCc_delta4 Catalyt 97.4 0.0014 3E-08 60.5 9.8 40 56-95 27-66 (258)
59 cd08595 PI-PLCc_zeta Catalytic 97.4 0.0014 3E-08 60.5 9.7 41 55-95 26-66 (257)
60 cd08629 PI-PLCc_delta1 Catalyt 97.3 0.0018 3.8E-08 59.8 9.9 41 55-95 26-66 (258)
61 cd08593 PI-PLCc_delta Catalyti 97.3 0.0018 3.8E-08 60.0 9.7 41 55-95 26-66 (257)
62 cd08630 PI-PLCc_delta3 Catalyt 97.3 0.0018 4E-08 59.8 9.8 41 55-95 26-66 (258)
63 cd08628 PI-PLCc_gamma2 Catalyt 97.3 0.002 4.3E-08 59.4 9.8 40 56-95 27-66 (254)
64 cd08598 PI-PLC1c_yeast Catalyt 97.3 0.002 4.4E-08 58.6 9.8 41 55-95 26-66 (231)
65 cd08626 PI-PLCc_beta4 Catalyti 97.3 0.0019 4.1E-08 59.6 9.6 41 55-95 26-68 (257)
66 cd08599 PI-PLCc_plant Catalyti 97.1 0.0042 9.1E-08 56.5 10.5 40 56-95 27-66 (228)
67 cd08623 PI-PLCc_beta1 Catalyti 97.1 0.0028 6.1E-08 58.5 9.3 40 56-95 27-68 (258)
68 cd08624 PI-PLCc_beta2 Catalyti 97.0 0.004 8.7E-08 57.6 9.4 41 55-95 26-68 (261)
69 PF10223 DUF2181: Uncharacteri 97.0 0.088 1.9E-06 48.5 17.9 211 59-359 12-242 (244)
70 cd08591 PI-PLCc_beta Catalytic 97.0 0.0053 1.2E-07 56.7 9.7 41 55-95 26-68 (257)
71 cd08625 PI-PLCc_beta3 Catalyti 96.9 0.0055 1.2E-07 56.8 9.5 41 55-95 26-68 (258)
72 PLN02230 phosphoinositide phos 95.9 0.038 8.2E-07 57.2 9.3 49 47-95 128-179 (598)
73 KOG1264 Phospholipase C [Lipid 95.6 0.0098 2.1E-07 62.0 3.3 49 48-96 323-374 (1267)
74 PLN02228 Phosphoinositide phos 95.5 0.073 1.6E-06 54.9 9.3 48 48-95 120-171 (567)
75 KOG0169 Phosphoinositide-speci 95.2 0.076 1.6E-06 55.5 8.3 48 48-95 303-353 (746)
76 PLN02952 phosphoinositide phos 95.2 0.12 2.5E-06 53.8 9.7 49 47-95 136-188 (599)
77 PLN02222 phosphoinositide phos 94.5 0.2 4.3E-06 51.9 9.2 49 47-95 116-168 (581)
78 cd08589 PI-PLCc_SaPLC1_like Ca 94.0 3.9 8.5E-05 39.4 16.2 29 57-85 43-71 (324)
79 PF08139 LPAM_1: Prokaryotic m 92.1 0.097 2.1E-06 30.1 1.4 21 2-22 5-25 (25)
80 PLN02223 phosphoinositide phos 91.1 0.22 4.7E-06 50.9 3.8 49 48-96 120-172 (537)
81 cd00137 PI-PLCc Catalytic doma 90.3 0.44 9.6E-06 45.0 4.9 40 56-95 32-71 (274)
82 PLN02591 tryptophan synthase 89.4 6.2 0.00013 36.7 11.6 28 55-82 13-40 (250)
83 COG2200 Rtn c-di-GMP phosphodi 87.8 7.1 0.00015 36.3 11.1 42 299-354 194-235 (256)
84 PF00388 PI-PLC-X: Phosphatidy 87.2 1.1 2.4E-05 37.9 4.8 40 56-95 24-63 (146)
85 PF04309 G3P_antiterm: Glycero 86.9 1.4 3.1E-05 38.5 5.3 52 300-364 33-90 (175)
86 PF04309 G3P_antiterm: Glycero 84.5 1.5 3.3E-05 38.3 4.4 141 155-357 29-173 (175)
87 cd08590 PI-PLCc_Rv2075c_like C 80.0 13 0.00029 34.8 9.3 37 58-95 41-77 (267)
88 KOG2421 Predicted starch-bindi 79.5 1.4 3.1E-05 44.1 2.7 49 45-93 43-105 (417)
89 KOG1265 Phospholipase C [Lipid 77.7 3.8 8.3E-05 44.0 5.2 38 59-96 342-381 (1189)
90 PF10566 Glyco_hydro_97: Glyco 77.0 4.7 0.0001 37.9 5.2 56 300-357 75-130 (273)
91 COG0826 Collagenase and relate 74.4 9.5 0.00021 37.3 6.8 60 301-365 52-111 (347)
92 cd04724 Tryptophan_synthase_al 73.6 75 0.0016 29.2 16.4 24 56-79 12-35 (242)
93 PF13627 LPAM_2: Prokaryotic l 71.9 5.9 0.00013 22.6 2.7 20 7-26 2-21 (24)
94 COG0269 SgbH 3-hexulose-6-phos 68.7 92 0.002 28.2 11.7 67 301-386 96-162 (217)
95 COG1242 Predicted Fe-S oxidore 67.4 27 0.00058 32.9 7.6 149 154-381 97-253 (312)
96 PRK11372 lysozyme inhibitor; P 66.4 7.5 0.00016 31.2 3.4 21 5-25 3-23 (109)
97 PF03599 CdhD: CO dehydrogenas 65.8 24 0.00052 34.9 7.4 91 195-353 84-176 (386)
98 PRK10781 rcsF outer membrane l 64.0 11 0.00024 31.3 4.0 19 6-24 2-20 (133)
99 cd04728 ThiG Thiazole synthase 62.7 11 0.00025 34.7 4.3 39 300-352 109-150 (248)
100 TIGR02764 spore_ybaN_pdaB poly 61.2 98 0.0021 27.0 10.1 28 297-324 106-133 (191)
101 PF06291 Lambda_Bor: Bor prote 60.8 14 0.00031 29.0 3.9 67 8-82 5-72 (97)
102 PRK11443 lipoprotein; Provisio 60.5 7.2 0.00016 32.1 2.4 19 7-25 3-21 (124)
103 PRK11627 hypothetical protein; 60.4 6 0.00013 35.2 2.0 23 3-25 1-23 (192)
104 PRK09810 entericidin A; Provis 60.4 7 0.00015 25.4 1.8 22 3-24 2-23 (41)
105 COG3056 Uncharacterized lipopr 59.8 9.2 0.0002 33.4 3.0 24 3-26 14-37 (204)
106 COG1954 GlpP Glycerol-3-phosph 59.6 1.2E+02 0.0026 26.5 10.3 138 155-354 33-174 (181)
107 PRK11059 regulatory protein Cs 59.4 56 0.0012 34.6 9.6 41 300-354 592-632 (640)
108 PRK00208 thiG thiazole synthas 59.0 14 0.00031 34.0 4.3 39 300-352 109-150 (250)
109 PF03060 NMO: Nitronate monoox 55.4 16 0.00034 35.4 4.2 39 300-353 125-163 (330)
110 cd04743 NPD_PKS 2-Nitropropane 54.8 17 0.00037 35.1 4.2 38 301-353 93-130 (320)
111 PF00563 EAL: EAL domain; Int 54.8 18 0.00039 32.4 4.3 40 301-354 193-232 (236)
112 PRK10060 RNase II stability mo 54.7 94 0.002 33.2 10.3 41 300-354 600-640 (663)
113 PF02402 Lysis_col: Lysis prot 53.8 6.6 0.00014 25.7 0.9 17 7-23 6-22 (46)
114 PF09370 TIM-br_sig_trns: TIM- 53.4 12 0.00025 35.0 2.8 44 300-358 139-182 (268)
115 TIGR00381 cdhD CO dehydrogenas 53.4 94 0.002 30.8 9.0 43 301-353 230-274 (389)
116 TIGR01768 GGGP-family geranylg 53.3 1.2E+02 0.0026 27.7 9.3 44 297-354 163-209 (223)
117 TIGR00262 trpA tryptophan synt 53.0 1.9E+02 0.0042 26.8 17.7 40 42-81 8-47 (256)
118 COG4943 Predicted signal trans 52.6 76 0.0017 32.3 8.4 38 298-349 458-495 (524)
119 TIGR03352 VI_chp_3 type VI sec 52.5 19 0.00042 30.4 3.8 18 9-26 5-22 (146)
120 PRK15396 murein lipoprotein; P 50.0 15 0.00031 27.6 2.3 16 9-24 10-25 (78)
121 PRK15452 putative protease; Pr 49.8 36 0.00078 34.5 5.8 56 301-364 49-107 (443)
122 PRK13561 putative diguanylate 49.1 95 0.0021 32.9 9.3 48 300-361 593-643 (651)
123 COG5510 Predicted small secret 48.9 13 0.00029 24.3 1.7 17 6-22 8-24 (44)
124 PF02638 DUF187: Glycosyl hydr 48.8 28 0.00062 33.4 4.8 18 301-318 73-90 (311)
125 PRK00865 glutamate racemase; P 48.6 2E+02 0.0043 26.7 10.3 75 155-247 17-96 (261)
126 TIGR02873 spore_ylxY probable 47.8 1.6E+02 0.0035 27.5 9.6 28 297-324 185-212 (268)
127 COG3009 Uncharacterized protei 47.5 12 0.00027 32.6 1.8 76 1-95 1-78 (190)
128 cd08586 PI-PLCc_BcPLC_like Cat 47.3 93 0.002 29.4 7.9 38 57-94 32-69 (279)
129 PF04131 NanE: Putative N-acet 46.1 83 0.0018 27.9 6.7 47 300-360 133-184 (192)
130 PRK10523 lipoprotein involved 45.9 47 0.001 30.5 5.4 73 4-96 5-77 (234)
131 PF12912 N_NLPC_P60: NLPC_P60 45.5 7.3 0.00016 31.9 0.1 21 7-27 1-21 (124)
132 COG1830 FbaB DhnA-type fructos 45.2 55 0.0012 30.6 5.8 87 301-387 133-229 (265)
133 PRK00022 lolB outer membrane l 44.8 21 0.00046 31.8 3.1 19 4-22 2-20 (202)
134 PRK13733 conjugal transfer pro 44.5 17 0.00037 31.5 2.2 19 5-23 4-22 (171)
135 PF13344 Hydrolase_6: Haloacid 44.3 55 0.0012 25.6 5.0 39 300-348 19-57 (101)
136 PRK09973 putative outer membra 43.7 21 0.00045 27.2 2.3 17 8-24 8-24 (85)
137 cd08557 PI-PLCc_bacteria_like 43.5 26 0.00057 32.4 3.6 38 58-95 37-75 (271)
138 TIGR03151 enACPred_II putative 42.4 35 0.00076 32.7 4.3 39 300-353 98-136 (307)
139 COG1456 CdhE CO dehydrogenase/ 41.5 2.4E+02 0.0051 27.7 9.4 30 199-240 149-178 (467)
140 PRK11548 outer membrane biogen 41.1 23 0.00049 28.6 2.4 23 1-23 1-23 (113)
141 COG0159 TrpA Tryptophan syntha 40.7 3.1E+02 0.0068 25.7 16.8 27 55-81 28-54 (265)
142 COG5461 Type IV pili component 39.5 59 0.0013 28.9 4.7 29 196-233 103-131 (224)
143 COG4238 Murein lipoprotein [Ce 38.7 26 0.00055 25.9 2.0 20 4-23 5-24 (78)
144 COG3317 NlpB Uncharacterized l 38.1 36 0.00078 32.8 3.5 25 1-25 1-25 (342)
145 PRK09776 putative diguanylate 38.0 1.9E+02 0.0041 32.6 10.0 54 300-367 1033-1089(1092)
146 cd06589 GH31 The enzymes of gl 37.9 47 0.001 30.9 4.4 50 300-357 68-117 (265)
147 KOG0023 Alcohol dehydrogenase, 37.1 64 0.0014 31.2 5.0 79 299-391 193-275 (360)
148 TIGR01182 eda Entner-Doudoroff 37.0 1.8E+02 0.0038 26.2 7.6 39 299-352 89-127 (204)
149 PRK13111 trpA tryptophan synth 36.9 3.5E+02 0.0076 25.2 16.5 41 42-82 10-50 (258)
150 cd08588 PI-PLCc_At5g67130_like 36.4 35 0.00076 32.1 3.2 48 44-92 16-68 (270)
151 cd02812 PcrB_like PcrB_like pr 36.2 2.6E+02 0.0057 25.4 8.7 42 299-354 161-205 (219)
152 COG1954 GlpP Glycerol-3-phosph 35.8 96 0.0021 27.0 5.4 56 300-368 37-98 (181)
153 COG5633 Predicted periplasmic 35.6 28 0.00061 28.2 2.0 18 9-26 6-23 (123)
154 TIGR00752 slp outer membrane l 35.0 22 0.00047 31.4 1.4 18 5-23 4-21 (182)
155 COG4314 NosL Predicted lipopro 35.0 38 0.00082 28.9 2.8 25 3-27 1-25 (176)
156 TIGR02884 spore_pdaA delta-lac 34.9 3.4E+02 0.0074 24.4 9.9 27 297-323 138-164 (224)
157 COG3417 FlgN Collagen-binding 34.8 55 0.0012 29.0 3.8 22 1-22 1-22 (200)
158 TIGR00548 lolB outer membrane 34.5 32 0.00069 30.8 2.5 18 7-24 4-21 (202)
159 PF10210 MRP-S32: Mitochondria 34.3 30 0.00066 27.0 2.0 17 77-93 4-21 (96)
160 TIGR01004 PulS_OutS lipoprotei 33.7 39 0.00086 27.8 2.6 24 2-25 3-26 (128)
161 PRK06852 aldolase; Validated 33.5 1.1E+02 0.0023 29.4 6.0 62 301-363 157-226 (304)
162 COG4594 FecB ABC-type Fe3+-cit 33.5 38 0.00083 31.4 2.8 26 1-26 3-28 (310)
163 PRK10081 entericidin B membran 33.2 29 0.00063 23.4 1.5 16 8-23 10-25 (48)
164 COG2185 Sbm Methylmalonyl-CoA 33.1 61 0.0013 27.3 3.8 44 296-353 76-122 (143)
165 PRK09250 fructose-bisphosphate 32.8 1.8E+02 0.0039 28.4 7.4 63 301-363 182-247 (348)
166 PF06673 L_lactis_ph-MCP: Lact 32.4 41 0.00089 29.9 2.7 45 51-95 256-301 (347)
167 COG3010 NanE Putative N-acetyl 32.1 1.3E+02 0.0029 27.1 5.8 48 300-361 169-221 (229)
168 PRK05265 pyridoxine 5'-phospha 31.9 4.1E+02 0.009 24.5 13.7 130 50-240 16-146 (239)
169 cd00381 IMPDH IMPDH: The catal 31.5 47 0.001 32.1 3.3 38 301-352 123-162 (325)
170 PRK15452 putative protease; Pr 31.4 3.5E+02 0.0075 27.5 9.5 22 56-77 8-29 (443)
171 PRK11829 biofilm formation reg 31.0 3.7E+02 0.0079 28.4 10.3 49 301-363 599-650 (660)
172 COG3017 LolB Outer membrane li 31.0 41 0.00089 30.1 2.5 25 2-26 4-28 (206)
173 PRK10802 peptidoglycan-associa 30.0 46 0.001 29.0 2.7 65 156-230 85-149 (173)
174 smart00052 EAL Putative diguan 30.0 72 0.0016 28.5 4.1 40 301-354 193-232 (241)
175 PRK15447 putative protease; Pr 29.7 1.3E+02 0.0028 28.7 5.9 52 301-363 51-105 (301)
176 COG3521 Predicted component of 29.7 96 0.0021 26.7 4.4 24 69-92 47-70 (159)
177 PF05690 ThiG: Thiazole biosyn 29.6 64 0.0014 29.7 3.5 37 302-352 114-150 (247)
178 PF08955 BofC_C: BofC C-termin 29.4 81 0.0017 23.5 3.4 15 79-93 13-27 (75)
179 PF13167 GTP-bdg_N: GTP-bindin 29.3 2.8E+02 0.006 21.6 7.2 61 301-361 11-75 (95)
180 PRK13883 conjugal transfer pro 29.3 43 0.00094 28.5 2.3 17 6-22 3-19 (151)
181 TIGR01370 cysRS possible cyste 29.2 1.5E+02 0.0031 28.7 6.1 84 299-384 82-196 (315)
182 PRK10175 lipoprotein; Provisio 28.6 33 0.00071 25.4 1.2 17 7-23 3-19 (75)
183 COG0189 RimK Glutathione synth 28.5 1.1E+02 0.0023 29.6 5.1 46 47-92 237-286 (318)
184 PRK14864 putative biofilm stre 28.2 61 0.0013 25.8 2.8 22 3-24 3-24 (104)
185 COG5016 Pyruvate/oxaloacetate 28.0 97 0.0021 30.9 4.7 47 301-354 128-177 (472)
186 PF13798 PCYCGC: Protein of un 27.9 52 0.0011 28.1 2.5 19 8-26 2-20 (158)
187 PF12957 DUF3846: Domain of un 27.8 1.1E+02 0.0023 23.6 4.2 35 56-95 15-49 (95)
188 PRK10449 heat-inducible protei 27.8 57 0.0012 27.3 2.8 20 6-25 3-22 (140)
189 COG2342 Predicted extracellula 27.7 91 0.002 29.4 4.2 48 336-384 129-179 (300)
190 PF11153 DUF2931: Protein of u 27.6 51 0.0011 29.7 2.6 20 7-26 3-22 (216)
191 PRK04169 geranylgeranylglycery 27.6 4.8E+02 0.01 23.9 9.6 42 299-354 170-214 (232)
192 PRK08227 autoinducer 2 aldolas 27.5 1.4E+02 0.003 28.0 5.5 59 301-363 130-189 (264)
193 COG4126 Hydantoin racemase [Am 27.4 4.7E+02 0.01 23.9 8.5 46 197-250 54-99 (230)
194 TIGR01769 GGGP geranylgeranylg 27.4 2.6E+02 0.0057 25.1 7.1 42 297-352 161-204 (205)
195 TIGR00640 acid_CoA_mut_C methy 27.3 1E+02 0.0023 25.5 4.2 39 301-353 71-112 (132)
196 cd02809 alpha_hydroxyacid_oxid 27.0 5.4E+02 0.012 24.3 12.2 40 300-353 160-200 (299)
197 CHL00162 thiG thiamin biosynth 26.8 72 0.0016 29.7 3.4 37 302-352 128-164 (267)
198 PRK11596 cyclic-di-GMP phospho 26.7 81 0.0017 29.0 3.9 46 301-360 199-247 (255)
199 TIGR01212 radical SAM protein, 26.7 2.5E+02 0.0055 26.7 7.4 64 155-239 92-158 (302)
200 TIGR03850 bind_CPR_0540 carboh 26.2 2E+02 0.0044 28.4 7.0 19 6-24 6-24 (437)
201 COG2609 AceE Pyruvate dehydrog 26.1 2.2E+02 0.0048 30.6 7.1 116 50-211 361-512 (887)
202 COG2179 Predicted hydrolase of 25.9 30 0.00066 30.0 0.8 20 342-361 23-42 (175)
203 PF03537 Glyco_hydro_114: Glyc 25.9 74 0.0016 23.4 2.8 20 299-318 37-56 (74)
204 PRK06015 keto-hydroxyglutarate 25.8 2.6E+02 0.0056 25.1 6.7 41 299-355 85-125 (201)
205 PF06924 DUF1281: Protein of u 25.8 21 0.00045 29.6 -0.3 47 12-69 32-78 (134)
206 PRK10722 hypothetical protein; 25.7 66 0.0014 29.6 2.9 43 5-66 15-57 (247)
207 COG1064 AdhP Zn-dependent alco 25.6 1E+02 0.0022 30.1 4.4 49 300-363 179-228 (339)
208 PF03740 PdxJ: Pyridoxal phosp 25.4 95 0.0021 28.6 3.9 40 301-354 114-153 (239)
209 PRK10866 outer membrane biogen 25.4 71 0.0015 29.4 3.2 18 5-22 5-22 (243)
210 cd04728 ThiG Thiazole synthase 25.2 5.6E+02 0.012 23.8 12.3 42 298-353 161-204 (248)
211 PF11525 CopK: Copper resistan 25.2 59 0.0013 23.7 2.0 24 79-102 43-66 (73)
212 TIGR01163 rpe ribulose-phospha 25.2 65 0.0014 28.4 2.9 23 56-78 9-31 (210)
213 TIGR02747 TraV type IV conjuga 24.9 42 0.00091 28.3 1.4 15 8-22 6-20 (144)
214 PRK13792 lysozyme inhibitor; P 24.9 52 0.0011 27.2 2.0 20 7-26 6-25 (127)
215 cd01948 EAL EAL domain. This d 24.4 1.1E+02 0.0023 27.3 4.2 40 301-354 192-231 (240)
216 TIGR02722 lp_ uncharacterized 24.3 75 0.0016 28.1 3.0 17 7-23 5-21 (189)
217 COG4545 Glutaredoxin-related p 24.0 76 0.0016 23.7 2.4 33 58-92 48-80 (85)
218 PRK00208 thiG thiazole synthas 23.8 5.9E+02 0.013 23.6 12.7 41 299-353 162-204 (250)
219 TIGR02898 spore_YhcN_YlaJ spor 23.7 54 0.0012 28.2 1.9 36 196-241 98-133 (158)
220 PF13617 Lipoprotein_19: YnbE- 23.5 66 0.0014 22.8 1.9 17 6-22 2-18 (59)
221 PRK11616 hypothetical protein; 23.1 61 0.0013 25.9 1.9 17 6-22 6-22 (109)
222 COG1646 Predicted phosphate-bi 23.0 2.5E+02 0.0055 25.8 6.1 44 297-354 178-221 (240)
223 PF00107 ADH_zinc_N: Zinc-bind 23.0 1.2E+02 0.0025 24.2 3.8 49 303-366 6-55 (130)
224 PRK13859 type IV secretion sys 23.0 65 0.0014 21.9 1.7 18 8-25 3-20 (55)
225 PRK13731 conjugal transfer sur 22.8 49 0.0011 30.4 1.5 23 1-23 1-24 (243)
226 PRK13835 conjugal transfer pro 22.6 65 0.0014 27.2 2.1 18 6-23 3-20 (145)
227 cd02067 B12-binding B12 bindin 22.6 2.2E+02 0.0048 22.5 5.3 48 300-359 67-115 (119)
228 PF00532 Peripla_BP_1: Peripla 22.5 1.9E+02 0.0042 26.9 5.7 42 301-352 21-62 (279)
229 COG5567 Predicted small peripl 22.4 1.2E+02 0.0025 21.1 2.9 21 9-29 9-29 (58)
230 COG1509 KamA Lysine 2,3-aminom 22.4 4.3E+02 0.0093 26.0 7.8 27 299-325 207-234 (369)
231 COG5645 Predicted periplasmic 22.0 53 0.0012 24.5 1.3 17 8-24 5-21 (80)
232 PRK06552 keto-hydroxyglutarate 21.5 6E+02 0.013 22.8 9.6 41 299-355 97-137 (213)
233 COG2022 ThiG Uncharacterized e 21.4 81 0.0018 28.9 2.6 37 301-351 120-156 (262)
234 COG3065 Slp Starvation-inducib 21.3 64 0.0014 28.2 1.9 19 7-25 10-28 (191)
235 PRK11530 hypothetical protein; 21.1 77 0.0017 27.6 2.3 24 1-24 1-24 (183)
236 PF15240 Pro-rich: Proline-ric 21.0 61 0.0013 28.4 1.7 18 6-23 1-18 (179)
237 PRK11251 DNA-binding transcrip 20.9 78 0.0017 25.4 2.2 18 5-22 3-20 (109)
238 PRK11070 ssDNA exonuclease Rec 20.8 4.1E+02 0.0088 28.0 8.0 49 294-354 111-159 (575)
239 PF06474 MLTD_N: MltD lipid at 20.7 88 0.0019 19.5 1.8 14 9-22 21-34 (34)
240 TIGR00559 pdxJ pyridoxine 5'-p 20.7 1.4E+02 0.003 27.5 4.0 39 301-353 113-151 (237)
241 cd00003 PNPsynthase Pyridoxine 20.3 1.4E+02 0.0031 27.3 4.0 39 301-353 113-151 (234)
242 PF11353 DUF3153: Protein of u 20.2 48 0.001 29.8 1.0 18 7-24 1-18 (209)
No 1
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=9.3e-54 Score=400.10 Aligned_cols=288 Identities=32% Similarity=0.502 Sum_probs=243.5
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCC--CEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGA--DFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Ga--d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~ 121 (391)
|+||||||+++.+||||++||+.|++.|+ ++||||||+||||++||+||.+|.|+|++.. .|+.|++++.++|+..
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~--~F~~r~~t~~idG~~~ 78 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR--VYPKRKKTYSVNGVST 78 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc--cccccccccccccccc
Confidence 68999999999999999999999999999 4799999999999999999999999999986 4999999999999999
Q ss_pred ccceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHH
Q 016353 122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (391)
Q Consensus 122 ~g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (391)
+|+++.|+||+||++|++...+.+|++.|.++.+||||+|+|++++. .++.+|||.+.+++. .+..+++.+
T Consensus 79 ~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g~~~IpTLeEvl~~~~~----~gi~i~ie~~~~~~~-----~gl~~~~~l 149 (299)
T cd08603 79 KGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVEDVVTLAKP----EGLWLNVQHDAFYQQ-----HNLSMSSYL 149 (299)
T ss_pred CCceeccCCHHHHhhCCCCCCcccCCcccCCcCCCCCHHHHHHHhHh----cCeEEEEecHHHHHH-----cCCCHHHHH
Confidence 99889999999999999987666677888876699999999999874 345556666655543 467899999
Q ss_pred HHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhc---CCCceEE-EEecccccccccccccccccchHHHHHHHh
Q 016353 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK---TDSPKIF-LIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (391)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~---~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (391)
+++|++++ .++||||+...|+++++. ...+.++ +++...+ .......|..+.. .+++|++
T Consensus 150 ~~~L~~~~-------------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~-~~~~~~~y~~~~~--~L~eIa~ 213 (299)
T cd08603 150 LSLSKTVK-------------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDV-EPSTNQTYGSILK--NLTFIKT 213 (299)
T ss_pred HHHHHHcC-------------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCc-CCCCCccHHHHHH--hHHHHHH
Confidence 99999886 389999999999999976 3455664 5554332 2234567877765 6889999
Q ss_pred hhhhcCCCcceeeecC-CCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcC---ccEEEeC
Q 016353 278 YCVGIGPWKDTVVPVA-NNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIG---VDGLFTD 353 (391)
Q Consensus 278 ~~~~i~~~~~~l~~~~-~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~G---VdgIiTD 353 (391)
||.+++|+..++.|.. ..+......+|+.+|++|+.||+||+.++.. .+++|..||..|+.. +++.| ||||+||
T Consensus 214 yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~-~~~~g~~~vDGvfTD 291 (299)
T cd08603 214 FASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLS-FVGNGNFSVDGVLSD 291 (299)
T ss_pred HHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHH-HHhcCCCCCCEEEec
Confidence 9999999999998863 4455556689999999999999999999887 788999999999986 45667 9999999
Q ss_pred CchhHHH
Q 016353 354 FPGSLHN 360 (391)
Q Consensus 354 ~P~~l~~ 360 (391)
+|+++.+
T Consensus 292 fP~~a~~ 298 (299)
T cd08603 292 FPITASE 298 (299)
T ss_pred Cchhhcc
Confidence 9998753
No 2
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=1.9e-53 Score=406.14 Aligned_cols=300 Identities=58% Similarity=0.957 Sum_probs=243.3
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|+||||||+++.+||||++||+.|++.|+|+||||||+||||++||+||.+|+|+|++...+.+++++.++.++|.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999998878899999888888888778
Q ss_pred ceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcC----CceeEEEeecCchhccccccccCcccHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFED 199 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~~~~~ 199 (391)
+.|.++|++||++++++.+++.+++.+.+.++||||+|+|++++..+ +.++++||||.+..... +.+..+++
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~----~~~~~~~~ 156 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNA----PLGLPMED 156 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcccCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhccc----ccCCCHHH
Confidence 77999999999999999988765555666569999999999997542 25899999997653211 12346899
Q ss_pred HHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccc----cccccccccchHHHHHH
Q 016353 200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTED----TNQSYSEITSDAYLNYI 275 (391)
Q Consensus 200 ~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i 275 (391)
+++++++++++... .++++|+|||++.|++++++...+.++|+........+ ....|..+.....+..+
T Consensus 157 ~v~~~l~~~~~~~~-------~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (309)
T cd08602 157 KLLETLKKYGYTGK-------KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEI 229 (309)
T ss_pred HHHHHHHHcCCCCC-------CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHH
Confidence 99999999987520 14899999999999999998866667776533210000 12344444455556666
Q ss_pred HhhhhhcCCCcceeeec-CCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 276 KEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 276 ~~~~~~i~~~~~~l~~~-~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..++.+++++...+.+. .......++++++.+|++|+.|++||||++....+++|+.|+.+++.. +.++||||||||+
T Consensus 230 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~-l~~~GVdgiiTD~ 308 (309)
T cd08602 230 ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRA-FLDAGVDGLFTDF 308 (309)
T ss_pred HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHH-HHHhCCCEEeCCC
Confidence 67778888877666553 223344577999999999999999999999877789999999999874 7789999999999
Q ss_pred c
Q 016353 355 P 355 (391)
Q Consensus 355 P 355 (391)
|
T Consensus 309 P 309 (309)
T cd08602 309 P 309 (309)
T ss_pred C
Confidence 8
No 3
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=1.7e-53 Score=405.34 Aligned_cols=294 Identities=30% Similarity=0.485 Sum_probs=233.2
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|+||||||+++.+||||++||+.|+++|+|+||||||+||||++||+||.+|+|+|++.. .++.+++++..+|....|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIAS--VFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccc--ccccccceecccCcccCC
Confidence 689999999999999999999999999999999999999999999999999999999885 467777888888888888
Q ss_pred ceecccCHHHHcccccccccc----CCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYS----FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED 199 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~----~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~ 199 (391)
++|.++|++||++|+++..+. +|++.+.++++||||+|+|++++..+ .++++||||.+..... . .+.++++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~---~-~~~~~~~ 153 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAE---H-KGLLSVD 153 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhh---h-ccccHHH
Confidence 779999999999999865433 35566666679999999999998643 3679999997643211 0 1246889
Q ss_pred HHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcC--CCceEEEEecccccccccccccccccchHHHHHHHh
Q 016353 200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT--DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (391)
Q Consensus 200 ~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~--p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (391)
.++++++++++.. ..++++++||++..|++++++. |.....++..... .+ .....+..+..
T Consensus 154 ~v~~~l~~~~~~~-------~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~--~~--------~~~~~l~~~~~ 216 (302)
T cd08571 154 AVLTSLSKAGYDQ-------TAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTE--PD--------TLLSNLTEIKK 216 (302)
T ss_pred HHHHHHHHcCCCC-------CCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCc--CC--------CChhHHHHHHH
Confidence 9999999998752 1258999999999999999998 6544433322100 00 01233566677
Q ss_pred hhhhcCCCcceeeec-CCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHc-CccEEEeCCc
Q 016353 278 YCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKI-GVDGLFTDFP 355 (391)
Q Consensus 278 ~~~~i~~~~~~l~~~-~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~-GVdgIiTD~P 355 (391)
++.+++++...+.+. ...+...+..+|+.+|++|+.|++||+|++....+++|..|++.++..++..+ ||||||||+|
T Consensus 217 ~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P 296 (302)
T cd08571 217 FASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFP 296 (302)
T ss_pred hcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCc
Confidence 778888766655542 12334445799999999999999999999998888899999999988766666 9999999999
Q ss_pred hhHHHH
Q 016353 356 GSLHNY 361 (391)
Q Consensus 356 ~~l~~~ 361 (391)
+.+++|
T Consensus 297 ~~~~~~ 302 (302)
T cd08571 297 ATAARA 302 (302)
T ss_pred hhhhcC
Confidence 998764
No 4
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.8e-53 Score=408.10 Aligned_cols=305 Identities=24% Similarity=0.345 Sum_probs=233.3
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCC-CcccccccCCccccccccccccccCcc
Q 016353 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV-FLDDTTNIADHKEFADRKRTCMVQGVN 120 (391)
Q Consensus 42 ~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~-~l~r~t~~~~~~~~~~~~~~~~~~g~~ 120 (391)
+.+++|||||+++.+||||++||+.|+++|||+||+||++||||++||+||. +|+|+|++...|+++.++++...+|..
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~ 94 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANA 94 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccccc
Confidence 4689999999999999999999999999999999999999999999999996 899999999889999999988777765
Q ss_pred ----cccceecccCHHHHcccccccc-----------c-----cCCccccCCCccccCHHHHHHHHHhcCCceeEEEeec
Q 016353 121 ----TTGFFVVDFTLEELKTLRAKQR-----------Y-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMK 180 (391)
Q Consensus 121 ----~~g~~v~dlt~~EL~~l~~~~~-----------~-----~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK 180 (391)
.++++|.|+||+||++|+.+.+ + .+|+..+.+.++||||+|+|++++.. .++++||||
T Consensus 95 ~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~--~v~l~iEiK 172 (356)
T cd08560 95 TKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSL--GVKMTPELK 172 (356)
T ss_pred ccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhc--CceEEEEeC
Confidence 3456899999999999987531 1 12344455557999999999999864 389999999
Q ss_pred CchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCc-e--EEEEeccccccc
Q 016353 181 NPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-K--IFLIDDVDILTE 257 (391)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~-~--~~l~~~~~~~~~ 257 (391)
.+..............+++.++++++++++.. ++|+++||+++.|+++++..|.. . +++.+... +.
T Consensus 173 ~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---------~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~--~~ 241 (356)
T cd08560 173 SPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---------SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDD--TA 241 (356)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHcCCCC---------CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCc--cc
Confidence 87643211000011258899999999999763 58999999999999998887753 2 23322211 00
Q ss_pred ccccccccccchHHHHHH-HhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCccccc--c-------
Q 016353 258 DTNQSYSEITSDAYLNYI-KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFL--H------- 327 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i-~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~--~------- 327 (391)
+. .+.. ...+..+ +.++.+++|+...+.+...+....+..+|+.+|++|++|++|||++++.+. +
T Consensus 242 ~~--~~~~---~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~ 316 (356)
T cd08560 242 DF--PATW---SPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTI 316 (356)
T ss_pred cc--cccH---HHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCcccccccc
Confidence 00 0111 1234555 456778888766665432234457899999999999999999998775443 1
Q ss_pred ---cccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhc
Q 016353 328 ---FNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQEL 364 (391)
Q Consensus 328 ---~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~ 364 (391)
.++.+|+..+++..+.++|||||+||+|++...|.+|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~~~~~~~~ 356 (356)
T cd08560 317 EDVINNDGDMYNVLDVLARDVGILGIFSDWPATVTYYANC 356 (356)
T ss_pred cccccccccHHHHHHHHHHhcCCCEEEccCCCceeEecCC
Confidence 1346777899987666999999999999999988775
No 5
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=2.5e-52 Score=397.18 Aligned_cols=294 Identities=27% Similarity=0.510 Sum_probs=224.6
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|+||||||+++.+||||++||+.|++.|+|+||||||+||||++||+||.+|+|+|++.. +.++.+++++ +.+...+|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~-~~~~~~~~~~-~~~~~~~~ 78 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVAT-SKFSNRATTV-PEIGSTSG 78 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCc-cccccccccc-ccccccCc
Confidence 689999999999999999999999999999999999999999999999999999999875 4666666653 33333556
Q ss_pred ceecccCHHHHcccccccccc------CCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccH
Q 016353 124 FFVVDFTLEELKTLRAKQRYS------FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF 197 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~------~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~ 197 (391)
+++.++||+||++++++..+. +|...+.+.++||||+|+|++++..+ .++++||||.+...... .+..+
T Consensus 79 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~-~~~l~iEiK~~~~~~~~----~~~~~ 153 (300)
T cd08604 79 IFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKS-LSGVLINVENAAYLAEK----KGLDV 153 (300)
T ss_pred eeeecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcC-CceEEEEeeccchhhhc----cCccH
Confidence 679999999999999875322 23345555569999999999998643 24799999976432100 12358
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHh
Q 016353 198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (391)
Q Consensus 198 ~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (391)
++.++++++++++.... .++++|+||+++.|+++++....+.++++..... .+ .+..+..+..
T Consensus 154 ~~~v~~~l~~~~~~~~~------~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~-------~~----~~~~~~~~~~ 216 (300)
T cd08604 154 VDAVLDALTNAGYDNQT------AQKVLIQSTDSSVLAAFKKQISYERVYVVDETIR-------DA----SDSSIEEIKK 216 (300)
T ss_pred HHHHHHHHHHcCCCCCC------CCeEEEEcCCHHHHHHHHhccCCceEEEecCccc-------cc----ChhHHHHHHH
Confidence 89999999999985210 0479999999999999999885555666642210 00 1223445555
Q ss_pred hhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 278 YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 278 ~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
++.++++....+.+....+...+..+++.+|++|+.|++||||++....+++|++++++++.+++.++||||||||+|++
T Consensus 217 ~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~ 296 (300)
T cd08604 217 FADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPAT 296 (300)
T ss_pred hccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchh
Confidence 66667665544433211122224589999999999999999999987778899999998888888899999999999999
Q ss_pred HHHH
Q 016353 358 LHNY 361 (391)
Q Consensus 358 l~~~ 361 (391)
+.+|
T Consensus 297 ~~~~ 300 (300)
T cd08604 297 AARY 300 (300)
T ss_pred hhcC
Confidence 8765
No 6
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.2e-51 Score=399.30 Aligned_cols=320 Identities=33% Similarity=0.563 Sum_probs=230.9
Q ss_pred hHHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCe
Q 016353 7 CFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGV 86 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~ 86 (391)
+-+.++++.||+||++... ...+|++|||||+++.+||||++||++|++.|+|+||||||+||||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--------------~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~ 69 (355)
T PRK11143 4 LSLALLLAALLAGSAAAAA--------------DSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQ 69 (355)
T ss_pred hHHHHHHHHHHHHhhHhhh--------------cCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCc
Confidence 4567788999999998554 35679999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccccccCCccccccccccccccCcccccceecccCHHHHccccccccccCC-----------ccccCCCcc
Q 016353 87 LICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFR-----------DQQYNGKFP 155 (391)
Q Consensus 87 ~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~EL~~l~~~~~~~~r-----------~~~~~~~~~ 155 (391)
+||+||.+++|+|++.. .++.+.++ +| .| +|.++||+||++++++.+|... .......++
T Consensus 70 lVv~HD~~l~rtT~~~~--~~~~~~~~---~g---~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~ 140 (355)
T PRK11143 70 LVVLHDHYLDRVTDVAE--RFPDRARK---DG---RY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFR 140 (355)
T ss_pred EEEeCCchhcccCCccc--cccccccc---CC---ce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCc
Confidence 99999999999998753 34433321 11 13 7999999999999999876421 111122468
Q ss_pred ccCHHHHHHHHHhc----CCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccCh
Q 016353 156 IITFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP 231 (391)
Q Consensus 156 ipTLeEvL~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~ 231 (391)
||||+|+|++++.. +..++++||||.+.... +.+.++++.++++++++++.. ..++++|+||++
T Consensus 141 IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~-----~~~~~~~~~v~~~l~~~g~~~-------~~~~v~i~SFd~ 208 (355)
T PRK11143 141 VHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHH-----QEGKDIAAKVLEVLKKYGYTG-------KDDKVYLQCFDA 208 (355)
T ss_pred cCCHHHHHHHHHHhhhhcCCCceeeEeccCccccc-----ccchhHHHHHHHHHHHhCCCC-------CCCCEEEeCCCH
Confidence 99999999999753 23578999999864321 123468999999999999742 015899999999
Q ss_pred hHHHHHhh-cCCC-----ceEEEEecccccc------cc--cccccccccchHHHHHHHhhhhhcCCCcceeeec-CCCC
Q 016353 232 TSLVYISN-KTDS-----PKIFLIDDVDILT------ED--TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNY 296 (391)
Q Consensus 232 ~~l~~l~~-~~p~-----~~~~l~~~~~~~~------~~--~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~-~~~~ 296 (391)
+.|+++++ ..|. +.++++....... .. ....|........+..+..++.+++|....+.+. ...+
T Consensus 209 ~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~ 288 (355)
T PRK11143 209 NELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPG 288 (355)
T ss_pred HHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchhhhcChhhHHHHHhhceeecCChhheeeccccCC
Confidence 99999998 5564 5566653221110 00 0111222222233455556677777754333221 1233
Q ss_pred CCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhc
Q 016353 297 SQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQEL 364 (391)
Q Consensus 297 ~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~ 364 (391)
...++++++.+|++|+.|++||||++. + .+|..|+.+..+..+.++||||||||+|+.+.+++..
T Consensus 289 ~~~~~~~v~~ah~~Gl~V~~WTVn~~~-~--~~~~~d~~~~~~~~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 289 NIKLTGMVKEAHQAKLVVHPYTVRADQ-L--PEYATDVNQLYDILYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred ccChHHHHHHHHHcCCEEEEEEecccc-c--hhhhcChHHHHHHHHHccCCCEEEcCChHHHHHHHhc
Confidence 445679999999999999999999873 2 2566666555443345899999999999999998763
No 7
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=3.6e-50 Score=382.83 Aligned_cols=277 Identities=50% Similarity=0.816 Sum_probs=202.3
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|+||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++...... +|....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~---------~~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPF---------RGRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCccccccc---------cccCCCC
Confidence 7899999999999999999999999999999999999999999999999999999988731111 1112223
Q ss_pred ceecccCHHHHcccccccccc----CCccccCCCccccCHHHHHHHHHhcC----CceeEEEeecCchhccccccccCcc
Q 016353 124 FFVVDFTLEELKTLRAKQRYS----FRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGK 195 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~----~r~~~~~~~~~ipTLeEvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~ 195 (391)
..|.++|++||++++++.||. .+...+...++||||+|+|++++... +.++++||||.+...+. .+.
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~-----~~~ 146 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQ-----EGP 146 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhh-----cCC
Confidence 479999999999999997652 12222223469999999999997632 25889999998643210 135
Q ss_pred cHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC-ceEEEEecccccccccccccccccchHHHHH
Q 016353 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNY 274 (391)
Q Consensus 196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
.+++.++++++++++.. ..++++++||++++|+++++..|. +.++|+.............|..+.....+..
T Consensus 147 ~~~~~v~~~l~~~~~~~-------~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (296)
T cd08559 147 DIEEKLLEVLKKYGYTG-------KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKE 219 (296)
T ss_pred CHHHHHHHHHHHcCCCC-------CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHH
Confidence 68999999999998751 015899999999999999999885 5556654322111111122333333444455
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecC---------cccccccccCCCchHHHHHHHHHc
Q 016353 275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRN---------EHQFLHFNFLQDPYREYDYWINKI 345 (391)
Q Consensus 275 i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~---------~~~~~~~~~~~~~~~~~~~~l~~~ 345 (391)
++.++.++++....+..........++++|+.+|++|+.|++||||+ ++++ .++.++
T Consensus 220 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~~~--------------~~l~~~ 285 (296)
T cd08559 220 IAKYADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDM--------------DALYNA 285 (296)
T ss_pred HHHHhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecCcccccccccccCH--------------HHHHHH
Confidence 54556666664333321111223345899999999999999999999 6666 467888
Q ss_pred -CccEEEeCCc
Q 016353 346 -GVDGLFTDFP 355 (391)
Q Consensus 346 -GVdgIiTD~P 355 (391)
||||||||+|
T Consensus 286 ~GVdgIiTD~P 296 (296)
T cd08559 286 AGVDGVFTDFP 296 (296)
T ss_pred hCCCEEEcCCC
Confidence 9999999998
No 8
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1e-49 Score=381.98 Aligned_cols=289 Identities=38% Similarity=0.639 Sum_probs=210.4
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|+||||||+++.+||||++||+.|++.|+|+||||||+||||++||+||.+|+|+|++.. .++.++++ +| .|
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~---~g---~~ 72 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE--KFPDRKRK---DG---RY 72 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc--cccccccc---CC---ce
Confidence 689999999999999999999999999999999999999999999999999999999763 23333321 12 13
Q ss_pred ceecccCHHHHccccccccccCCc----cc----c---CCCccccCHHHHHHHHHhc----CCceeEEEeecCchhcccc
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRD----QQ----Y---NGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQH 188 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~----~~----~---~~~~~ipTLeEvL~~~~~~----~~~~~l~iEiK~~~~~~~~ 188 (391)
.|.++||+||++|+++.||+.++ +. + .+.++||||+|+|++++.. +..+.++||||.+.....
T Consensus 73 -~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~- 150 (318)
T cd08600 73 -YVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ- 150 (318)
T ss_pred -eEeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh-
Confidence 69999999999999998874321 01 1 1346899999999998742 235789999997643211
Q ss_pred ccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhh-cCC----C-ceEEEEeccccccc-----
Q 016353 189 VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN-KTD----S-PKIFLIDDVDILTE----- 257 (391)
Q Consensus 189 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~-~~p----~-~~~~l~~~~~~~~~----- 257 (391)
.+..+++.++++++++++..+ .++++|+||++.+|+++++ ..| . +.++|+....+...
T Consensus 151 ----~~~~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (318)
T cd08600 151 ----EGKDIAAATLEVLKKYGYTSK-------NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP 219 (318)
T ss_pred ----ccccHHHHHHHHHHHcCCCCC-------CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence 234689999999999998521 1479999999999999997 676 4 55566542211100
Q ss_pred --ccccccccccchHHHHHHHhhhhhcCCCcceeeec-CCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCc
Q 016353 258 --DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDP 334 (391)
Q Consensus 258 --~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~-~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~ 334 (391)
.....|..+.....+..++.++.+++++...+.+. ...+...+.++|+.+|++|+.|++||||+++... ++.++
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~---~~~~~ 296 (318)
T cd08600 220 GGWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE---YAKDA 296 (318)
T ss_pred CCccccchhhhcCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccc---ccCCH
Confidence 00112333333444566777888888876555332 1113346789999999999999999999997531 23333
Q ss_pred hHHHHHHHHHcCccEEEeCCch
Q 016353 335 YREYDYWINKIGVDGLFTDFPG 356 (391)
Q Consensus 335 ~~~~~~~l~~~GVdgIiTD~P~ 356 (391)
...+..++.++||||||||+|+
T Consensus 297 ~~~~~~~l~~~GVDGiiTD~P~ 318 (318)
T cd08600 297 DQLLDALLNKAGVDGVFTDFPD 318 (318)
T ss_pred HHHHHHHHHhcCCcEEEcCCCC
Confidence 3433334678999999999995
No 9
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=7.6e-51 Score=378.54 Aligned_cols=249 Identities=19% Similarity=0.230 Sum_probs=185.7
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|++|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~--------------------g 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS--------------------G 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC--------------------C
Confidence 67999999999999999999999999999999999999999999999999999999987 4
Q ss_pred ceecccCHHHHccccccccccCC-ccccCC-CccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFR-DQQYNG-KFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r-~~~~~~-~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (391)
.|+++||+||++++++.||... +..|.+ .++||||+|+|++++. +.++||||.+. ...+++.+
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~----~~l~iEiK~~~----------~~~~~~~v 125 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPD----TPFILDMKSLP----------ADPQAKAV 125 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcC----CeEEEEECCCC----------cHHHHHHH
Confidence 7999999999999999887421 112332 2589999999999953 67999999753 23688999
Q ss_pred HHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC-------ceEEEEeccccccc-ccc---cccccccchH
Q 016353 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-------PKIFLIDDVDILTE-DTN---QSYSEITSDA 270 (391)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-------~~~~l~~~~~~~~~-~~~---~~~~~~~~~~ 270 (391)
+++++++++. ++++++||++..|+.+++..|. ....++........ ... .....+....
T Consensus 126 ~~~i~~~~~~----------~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (263)
T cd08580 126 ARVLERENAW----------SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRR 195 (263)
T ss_pred HHHHHhcCCC----------CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccc
Confidence 9999999986 5899999999999999999874 11111110000000 000 0000000000
Q ss_pred HHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHc-CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 271 YLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 271 ~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~-Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
.+.....++.+. ..+ ..++.++++++|+.+|++ |+.|++||||++++| ++|.++||||
T Consensus 196 ~~~~~~~~~~~~----~~~---~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~~~--------------~~l~~~GVDg 254 (263)
T cd08580 196 KVTVVETFTLGE----GRS---PVQATLWTPAAVDCFRRNSKVKIVLFGINTADDY--------------RLAKCLGADA 254 (263)
T ss_pred cchheeeecccc----ccc---ccccccCCHHHHHHHHhcCCcEEEEEEeCCHHHH--------------HHHHHcCCCE
Confidence 000010110111 111 124567899999999999 999999999999999 6899999999
Q ss_pred EEeCCchhH
Q 016353 350 LFTDFPGSL 358 (391)
Q Consensus 350 IiTD~P~~l 358 (391)
||||+|+.+
T Consensus 255 IiTD~P~~~ 263 (263)
T cd08580 255 VMVDSPAAM 263 (263)
T ss_pred EEeCCcccC
Confidence 999999863
No 10
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.9e-49 Score=367.81 Aligned_cols=246 Identities=38% Similarity=0.547 Sum_probs=193.8
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCccccccc--CCccccccccccccccCcccc
Q 016353 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI--ADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 45 ~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~--~~~~~~~~~~~~~~~~g~~~~ 122 (391)
+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++ .
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~-------------------- 61 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP-------------------- 61 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC--------------------
Confidence 589999999999999999999999999999999999999999999999999999987 5
Q ss_pred cceecccCHHHHccccccccccC-----CccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccH
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSF-----RDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF 197 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~-----r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~ 197 (391)
| .|+++|++||++++++.+|.. ++..+.+ ++||||+|+|++++. .+.++||||.+.. ...+
T Consensus 62 g-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~iptL~evl~~~~~---~~~l~IEiK~~~~---------~~~~ 127 (256)
T cd08601 62 G-PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG-LKVPTLEEVIERYGG---RANYYIETKSPDL---------YPGM 127 (256)
T ss_pred c-eeecCcHHHHHhcCCCccccccCccccccccCC-ccCCCHHHHHHHhcc---CceEEEEeeCCCC---------CCCH
Confidence 4 799999999999999876631 1122333 699999999999964 3689999997532 1257
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC-ceEEEEecccccccccccccccccchHHHHHHH
Q 016353 198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK 276 (391)
Q Consensus 198 ~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 276 (391)
++.++++++++++..+.. ..++++|+||++++++++++..|. +.++++...... . .....+..+.
T Consensus 128 ~~~v~~~l~~~~~~~~~~----~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~-~~~~~~~~~~ 193 (256)
T cd08601 128 EEKLLATLDKYGLLTDNL----KNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA---------E-TYDKWLDEIK 193 (256)
T ss_pred HHHHHHHHHHcCCCcccC----CCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc---------c-cchhHHHHHH
Confidence 899999999998752100 015899999999999999998875 455565432110 0 0112233333
Q ss_pred hhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCch
Q 016353 277 EYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPG 356 (391)
Q Consensus 277 ~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~ 356 (391)
.++.++++ ++..+++++++.+|++|+.|++||+|+.+++ +++.++||||||||+|+
T Consensus 194 ~~~~~~~~----------~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~--------------~~l~~~Gvd~IiTD~p~ 249 (256)
T cd08601 194 EYAIGIGP----------SIADADPWMVHLIHKKGLLVHPYTVNEKADM--------------IRLINWGVDGMFTNYPD 249 (256)
T ss_pred hcCeEeCC----------chhhcCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHhcCCCEEEeCCHH
Confidence 33333332 3345689999999999999999999999998 57999999999999999
Q ss_pred hHHHHH
Q 016353 357 SLHNYQ 362 (391)
Q Consensus 357 ~l~~~~ 362 (391)
++++++
T Consensus 250 ~~~~~~ 255 (256)
T cd08601 250 RLKEVL 255 (256)
T ss_pred HHHHhh
Confidence 998875
No 11
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=1.4e-48 Score=371.60 Aligned_cols=262 Identities=21% Similarity=0.185 Sum_probs=199.9
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
.|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++... ++++.
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~--~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV--FPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC--ccccc-----------
Confidence 47999999999999999999999999999999999999999999999999999999997620 00000
Q ss_pred cceecccCHHHHccccccccccCCcc-------------ccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccc
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~-------------~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (391)
..+|+++|++||++++++.||..+.+ .+.+ ++||||+|+|+.+++.+ +.++||||.+.....
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~~-- 167 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADN-QTVPSLSELLDLAKKHN--VSIMFDLRNENNSHV-- 167 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCCc--
Confidence 01499999999999999988743210 1233 69999999999998643 779999997531000
Q ss_pred cccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccch
Q 016353 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (391)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (391)
....+++.+++.++++++.. +++++ |+...++.+++..|.....+...
T Consensus 168 ---~~~~f~~~vl~~i~~~~~~~---------~~v~~--~~~~~l~~~~~~~P~~~~~~~~~------------------ 215 (315)
T cd08609 168 ---FYSSFVFYTLETILKLGIPP---------DKVWW--LPDEYRHDVMKMEPGFKQVYGRQ------------------ 215 (315)
T ss_pred ---cHHHHHHHHHHHHHHcCCCc---------ceEEE--eCHHHHHHHHHhCcCceeecccc------------------
Confidence 12367889999999998753 34443 46788999999988654422100
Q ss_pred HHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 270 ~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
.......+. .+. .++..+++++++.+|++|++|++||||+++.+ +++.++||||
T Consensus 216 --~~~~~~~~~-------~i~---~~~~~l~~~~v~~~~~~G~~v~vWTVNd~~~~--------------~~l~~~GVDg 269 (315)
T cd08609 216 --KEMLMDGGN-------FMN---LPYQDLSALEIKELRKDNVSVNLWVVNEPWLF--------------SLLWCSGVSS 269 (315)
T ss_pred --hhhHhcCCe-------EEe---cccccCCHHHHHHHHHCCCEEEEECCCCHHHH--------------HHHHhcCCCE
Confidence 000011111 222 24566799999999999999999999999999 6899999999
Q ss_pred EEeCCchhHHHHHhccCCCCCCchHHHHHhhhhh
Q 016353 350 LFTDFPGSLHNYQELTSPVSKDNRASKLLHKIAV 383 (391)
Q Consensus 350 IiTD~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (391)
||||+|+.+.++.+..-.. +...+|+.+|+.
T Consensus 270 IiTD~P~~l~~~~~~~~~~---~~~~~~~~~~~~ 300 (315)
T cd08609 270 VTTNACQLLKDMSKPIWLL---EPNTYLGIWIAT 300 (315)
T ss_pred EEcCCHHHHHHhhhhhhhC---ChhhHHHHHHHH
Confidence 9999999999988765554 677888888763
No 12
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=1.2e-48 Score=373.05 Aligned_cols=265 Identities=20% Similarity=0.237 Sum_probs=193.0
Q ss_pred CCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCcccccccccccc
Q 016353 36 KQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115 (391)
Q Consensus 36 ~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~ 115 (391)
.+..+...|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++.
T Consensus 19 ~~~~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~------------- 85 (300)
T cd08612 19 KKKKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD------------- 85 (300)
T ss_pred cccccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC-------------
Confidence 3445577899999999999999999999999999999999999999999999999999999999977
Q ss_pred ccCcccccceecccCHHHHccccccccc-----cCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhcccccc
Q 016353 116 VQGVNTTGFFVVDFTLEELKTLRAKQRY-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVK 190 (391)
Q Consensus 116 ~~g~~~~g~~v~dlt~~EL~~l~~~~~~-----~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~ 190 (391)
| .|+++|++||++++.+..+ .+++..+.+ ++||||+|+|+.++ .+.++||||.+.
T Consensus 86 -------g-~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g-~~IPtL~EvL~~~~----~~~lnIEiK~~~------- 145 (300)
T cd08612 86 -------K-LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD-RRIPLLEEVFEAFP----DTPINIDIKVEN------- 145 (300)
T ss_pred -------c-ccccCCHHHHhhccccccccccCCccccccCCC-CCCCCHHHHHHhCC----CCeEEEEECCCc-------
Confidence 4 6999999999999543211 112234444 69999999999884 368999999752
Q ss_pred ccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEeccccc---------cccccc
Q 016353 191 WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDIL---------TEDTNQ 261 (391)
Q Consensus 191 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~---------~~~~~~ 261 (391)
..+++.++++++++++. ++++++||+++.|+++++..|...+.+....... ......
T Consensus 146 ----~~~~~~v~~~i~~~~~~----------~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T cd08612 146 ----DELIKKVSDLVRKYKRE----------DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPI 211 (300)
T ss_pred ----hHHHHHHHHHHHHcCCC----------CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccC
Confidence 24889999999999976 5899999999999999999887555432110000 000000
Q ss_pred ccccccchHHHHHHHhhhhh--cCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHH
Q 016353 262 SYSEITSDAYLNYIKEYCVG--IGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYD 339 (391)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~--i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~ 339 (391)
....+...........+... ......... ..++..+++++++.+|++|+.|++||||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~~~-------------- 275 (300)
T cd08612 212 KESFLEIPMPSIFLKTYFPKSMSRLNRFVLF--LIDWLLMRPSLFRHLQKRGIQVYGWVLNDEEEF-------------- 275 (300)
T ss_pred ccccccccchhhhhhhcccccccccccceec--ccccccCCHHHHHHHHHCCCEEEEeecCCHHHH--------------
Confidence 00000000000000000000 000000011 123456799999999999999999999999999
Q ss_pred HHHHHcCccEEEeCCchhHHHHHh
Q 016353 340 YWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 340 ~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
+++.++||||||||+|+.+.+++.
T Consensus 276 ~~l~~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 276 ERAFELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred HHHHhcCCCEEEeCCHHHHHHHHh
Confidence 589999999999999999988764
No 13
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=1.1e-48 Score=372.19 Aligned_cols=271 Identities=19% Similarity=0.216 Sum_probs=201.0
Q ss_pred CCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCc
Q 016353 40 QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGV 119 (391)
Q Consensus 40 ~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~ 119 (391)
-...|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++.. .+++++.
T Consensus 19 ~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~--~~~~~~~------- 89 (316)
T cd08610 19 LGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGE--VQPESAC------- 89 (316)
T ss_pred cCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCC--ccccccc-------
Confidence 3566899999999999999999999999999999999999999999999999999999999863 1222221
Q ss_pred ccccceecccCHHHHccccccccccCC------------c-cccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhcc
Q 016353 120 NTTGFFVVDFTLEELKTLRAKQRYSFR------------D-QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFIN 186 (391)
Q Consensus 120 ~~~g~~v~dlt~~EL~~l~~~~~~~~r------------~-~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~ 186 (391)
| .|.++||+||++++++.||... + ..+.+ ++||||+|+|+++++.+ +.++||||.+...
T Consensus 90 ---~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~- 161 (316)
T cd08610 90 ---E-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPK- 161 (316)
T ss_pred ---c-chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCccc-
Confidence 3 6999999999999999887421 0 12233 69999999999998543 6899999974211
Q ss_pred ccccccCcccHHHHHHHHH-HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEeccccccccccccccc
Q 016353 187 QHVKWADGKKFEDKFVDTL-KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSE 265 (391)
Q Consensus 187 ~~~~~~~~~~~~~~v~~~l-~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 265 (391)
.+....+++.+++.+ +++++. +++++ ||++..+.++++..|.....+....
T Consensus 162 ----~~~~~~~~~~v~~~i~~~~~~~----------~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~------------- 213 (316)
T cd08610 162 ----HPYRHTWIRRVLEVILNEVGIE----------QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKV------------- 213 (316)
T ss_pred ----CcchhHHHHHHHHHHHHHcCCC----------CCEEE-EcCHHHHHHHHHHCcchhhhhcccc-------------
Confidence 011224777888876 677875 45666 5889999999999886443221100
Q ss_pred ccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHc
Q 016353 266 ITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKI 345 (391)
Q Consensus 266 ~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (391)
. ...+.. .+ ...+. .++..+++++++.+|++|+.|++||||+++.+ +++.++
T Consensus 214 --~---~~~l~~----~~--~~~l~---~~~~~l~~~~v~~a~~~Gl~V~vWTVNd~~~~--------------~~l~~~ 265 (316)
T cd08610 214 --P---IETLLK----NN--ISILN---LAYKKLFSNDIRDYKAANIHTNVYVINEPWLF--------------SLAWCS 265 (316)
T ss_pred --c---HHHHHH----cC--CeEEc---cchhhCCHHHHHHHHHCCCEEEEECCCCHHHH--------------HHHHhC
Confidence 0 111111 11 12232 24566799999999999999999999999998 589999
Q ss_pred CccEEEeCCchhHHHHHhccCCCCCCchHHHH-Hhhhhhhhc
Q 016353 346 GVDGLFTDFPGSLHNYQELTSPVSKDNRASKL-LHKIAVLIS 386 (391)
Q Consensus 346 GVdgIiTD~P~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 386 (391)
||||||||+|+.+.++.+ +..+-+.+.+| +..|+.+|+
T Consensus 266 GVDgIiTD~P~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 304 (316)
T cd08610 266 GIHSVTTNNIHLLKQLDH---PHFFMTPKFYVFMWLLADIIS 304 (316)
T ss_pred CcCEEEeCCHHHHHHhhc---hhhhCCHHHHHHHHHHHHHHH
Confidence 999999999999977655 44445666655 444555553
No 14
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2.6e-48 Score=361.57 Aligned_cols=239 Identities=23% Similarity=0.215 Sum_probs=184.2
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
.|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++.
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~-------------------- 66 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW-------------------- 66 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC--------------------
Confidence 489999999999999999999999999999999999999999999999999999999987
Q ss_pred cceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHH
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFV 202 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~ 202 (391)
| .|.++||+||++++++.++. ..+.+ ++||||+|+|+.+... .+.++||+|..... .....+.+.
T Consensus 67 ~-~v~~~t~~el~~l~~~~~~~---~~~~~-~~iPtL~evl~~~~~~--~~~l~iEiK~~~~~--------~~~~~~~v~ 131 (249)
T PRK09454 67 G-VAGELTWQDLAQLDAGSWFS---AAFAG-EPLPTLSQVAARCRAH--GMAANIEIKPTTGR--------EAETGRVVA 131 (249)
T ss_pred C-chhhCCHHHHHhcCCCCccC---CCCCC-CcCCCHHHHHHHHHhc--CCEEEEEECCCCCc--------chhHHHHHH
Confidence 4 69999999999999987763 33444 5899999999999753 37899999964311 122333444
Q ss_pred HHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCc-eEEEEecccccccccccccccccchHHHHHHHhhhhh
Q 016353 203 DTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVG 281 (391)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 281 (391)
.+++.+.... .++++++||++..|++++++.|.. ..+++.... ......+..
T Consensus 132 ~~~~~~~~~~--------~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~---------------~~~~~~~~~---- 184 (249)
T PRK09454 132 LAARALWAGA--------AVPPLLSSFSEDALEAARQAAPELPRGLLLDEWP---------------DDWLELTRR---- 184 (249)
T ss_pred HHHHHHhcCC--------CCCEEEEeCCHHHHHHHHHhCCCCcEEEEecccc---------------ccHHHHHHh----
Confidence 4444432110 158999999999999999998864 445543210 001111111
Q ss_pred cCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHH
Q 016353 282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNY 361 (391)
Q Consensus 282 i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~ 361 (391)
.+. ..+. .++..+++.+++.+|++|++|++||||+++++ +++.++||||||||+|+.++..
T Consensus 185 ~~~--~~~~---~~~~~~~~~~v~~~~~~g~~v~~WTvn~~~~~--------------~~l~~~GVdgIiTD~p~~~~~~ 245 (249)
T PRK09454 185 LGC--VSLH---LNHKLLDEARVAALKAAGLRILVYTVNDPARA--------------RELLRWGVDCICTDRIDLIGPD 245 (249)
T ss_pred cCC--eEEe---cccccCCHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHcCCCEEEeCChHhcCcc
Confidence 111 1222 24566799999999999999999999999998 5899999999999999988654
Q ss_pred H
Q 016353 362 Q 362 (391)
Q Consensus 362 ~ 362 (391)
+
T Consensus 246 ~ 246 (249)
T PRK09454 246 F 246 (249)
T ss_pred c
Confidence 3
No 15
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=5.8e-48 Score=359.45 Aligned_cols=238 Identities=22% Similarity=0.255 Sum_probs=182.1
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
+|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++.. ..+.++.
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g--~~~~~~~---------- 68 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVAD--VFPERAH---------- 68 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCc--ccccccc----------
Confidence 4789999999999999999999999999999999999999999999999999999998763 1111111
Q ss_pred cceecccCHHHHccccccccccCCcc-------------ccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccc
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~-------------~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (391)
| +|.++||+||++|+++.||..+++ .+.+ ++||||+|+|+++++.+ +.++||||.+....
T Consensus 69 ~-~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~--- 141 (252)
T cd08574 69 E-RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNH--- 141 (252)
T ss_pred c-chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccC---
Confidence 2 599999999999999998743221 3344 59999999999998643 68999999753110
Q ss_pred cccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccch
Q 016353 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (391)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (391)
+....+++.++++++++++. ++++++||+.. ++.++++.|...+.+.... +
T Consensus 142 --~~~~~~~~~v~~~l~~~~~~----------~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~----------~------ 192 (252)
T cd08574 142 --PYYQSYVNITLDTILASGIP----------QHQVFWLPDEY-RALVRKVAPGFQQVSGRKL----------P------ 192 (252)
T ss_pred --ccHHHHHHHHHHHHHHcCCC----------cccEEEccHHH-HHHHHHHCCCCeEeecccc----------c------
Confidence 01235889999999999875 34556566554 7899999887655432110 0
Q ss_pred HHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 270 ~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
...+.. .+. ..+. ..+..+++++++.+|++|+.|++||||+++++ +++.++||||
T Consensus 193 --~~~~~~----~~~--~~~~---~~~~~~~~~~v~~~~~~g~~v~~WTVn~~~~~--------------~~l~~~GVdg 247 (252)
T cd08574 193 --VESLRE----NGI--SRLN---LEYSQLSAQEIREYSKANISVNLYVVNEPWLY--------------SLLWCSGVQS 247 (252)
T ss_pred --hHHHHh----cCC--eEEc---cCcccCCHHHHHHHHHCCCEEEEEccCCHHHH--------------HHHHHcCCCE
Confidence 011111 111 2232 24566799999999999999999999999998 5899999999
Q ss_pred EEeC
Q 016353 350 LFTD 353 (391)
Q Consensus 350 IiTD 353 (391)
||||
T Consensus 248 IiTD 251 (252)
T cd08574 248 VTTN 251 (252)
T ss_pred EecC
Confidence 9999
No 16
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=1.8e-47 Score=352.01 Aligned_cols=229 Identities=27% Similarity=0.353 Sum_probs=184.0
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|++++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~--------------------~-~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS--------------------G-A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC--------------------c-e
Confidence 689999999999999999999999999999999999999999999999999999976 4 7
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|+++||+||++++.+.++. +.+.+ ++||||+|+|+++++.+ +.++||+|.+.. ....+++.+++++
T Consensus 60 i~~lt~~el~~l~~~~~~~---~~~~~-~~iptl~evl~~~~~~~--~~l~iEiK~~~~--------~~~~~~~~v~~~l 125 (229)
T cd08562 60 VTELTWAELAQLDAGSWFS---PEFAG-EPIPTLADVLELARELG--LGLNLEIKPDPG--------DEALTARVVAAAL 125 (229)
T ss_pred eecCcHHHHhhcCCCcccC---CCCCC-CCCCCHHHHHHHHHhcC--CEEEEEECCCCC--------ccHHHHHHHHHHH
Confidence 9999999999999886643 33344 58999999999997543 789999998642 1235788899999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 285 (391)
++++... ++++++||+++.++++++..|...+.++..... ....+.+.. .+.
T Consensus 126 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~--------------~~~~~~~~~----~~~- 177 (229)
T cd08562 126 RELWPHA---------SKLLLSSFSLEALRAARRAAPELPLGLLFDTLP--------------ADWLELLAA----LGA- 177 (229)
T ss_pred HHhcCCc---------CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC--------------cCHHHHHHH----cCC-
Confidence 9998742 589999999999999999988655443322100 001111111 111
Q ss_pred cceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 286 KDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
..+. .++..+++++++.+|++|+.|++||+|+++++ .++.++||||||||+|
T Consensus 178 -~~~~---~~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~--------------~~~~~~gVdgiiTD~p 229 (229)
T cd08562 178 -VSIH---LNYRGLTEEQVKALKDAGYKLLVYTVNDPARA--------------AELLEWGVDAIFTDRP 229 (229)
T ss_pred -eEEe---cChhhCCHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHCCCCEEEcCCC
Confidence 1222 24556789999999999999999999999988 5799999999999998
No 17
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=1.8e-47 Score=367.55 Aligned_cols=263 Identities=19% Similarity=0.195 Sum_probs=196.0
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
+|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.. ..++++.
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g--~v~~~~~---------- 68 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDR--VFPERQY---------- 68 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCC--ccccccc----------
Confidence 4789999999999999999999999999999999999999999999999999999999873 0111110
Q ss_pred cceecccCHHHHccccccccccCCcc-------------ccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccc
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV 189 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~-------------~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~ 189 (391)
..++++||+||++++++.||..+++ .+.+ ++||||+|+|+++++.+ ..++||||.+...
T Consensus 69 -~~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g-e~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~---- 140 (351)
T cd08608 69 -EDASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN-QSVCSLAELLELAKRYN--ASVLLNLRRPPPN---- 140 (351)
T ss_pred -cccccCCHHHHhhCCCCcccccCCccccccccccccccccCC-CCCCCHHHHHHHHHhcC--CeEEEEECCCccc----
Confidence 0357899999999999988742211 2333 69999999999998643 6799999975311
Q ss_pred cccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccch
Q 016353 190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269 (391)
Q Consensus 190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (391)
++....+++.+++++.++++.. ++++++||+. ++.+++..|.........
T Consensus 141 -~~~~~~~~~~v~~~i~~~~~~~---------~~vi~sSf~~--~~~vr~l~P~~~~~~~~~------------------ 190 (351)
T cd08608 141 -HPYHQSWINLTLKTILASGIPQ---------EQVMWTPDWQ--RKLVRKVAPGFQQTSGEK------------------ 190 (351)
T ss_pred -CcchhHHHHHHHHHHHHhCCCc---------CeEEEEcchH--HHHHHHHCCCCeeecccc------------------
Confidence 1122467888999999998753 5788889977 478888888644321000
Q ss_pred HHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 270 ~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
.....+.. .+. ..+.+ ++..+++++++.+|++|+.|++||||+++.+ .++.++||||
T Consensus 191 ~~~~~~~~----~~~--~~l~~---~~~~lt~~~v~~~~~~Gl~V~vWTVN~~~~~--------------~~l~~~GVdg 247 (351)
T cd08608 191 LPVASLRE----RGI--TRLNL---RYTQASAQEIRDYSASNLSVNLYTVNEPWLY--------------SLLWCSGVPS 247 (351)
T ss_pred chHHHHHH----cCC--eEEcc---chhhcCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHHCCCCE
Confidence 00111111 111 12322 4566799999999999999999999999998 5899999999
Q ss_pred EEeCCchhHHHHHhccCCCCCCchHHHHHhhh
Q 016353 350 LFTDFPGSLHNYQELTSPVSKDNRASKLLHKI 381 (391)
Q Consensus 350 IiTD~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
||||+|+.+.++.. |.-.-++.+.+|..+
T Consensus 248 IiTD~P~~l~~l~~---~~~~~~~~~~~~~~~ 276 (351)
T cd08608 248 VTSDASHVLRKVPF---PLWLMPPDEYCLIWI 276 (351)
T ss_pred EEECCHHHHHHhhh---hhhhCChhhhhHHHH
Confidence 99999999987644 444455666555543
No 18
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2e-47 Score=350.96 Aligned_cols=227 Identities=22% Similarity=0.270 Sum_probs=171.5
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE--------------------G-L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC--------------------c-e
Confidence 589999999999999999999999999999999999999999999999999999977 4 7
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|.++|++||+++++.....+ +..+.+ ++||||+|+|++++++ ..+.++||+|.+... ...+.+.+.+++
T Consensus 60 v~~~t~~el~~l~~~~~~~~-~~~~~~-~~iptL~evl~~~~~~-~~~~l~iEiK~~~~~--------~~~~~~~v~~~~ 128 (229)
T cd08581 60 LHELEDAELDSLRVAEPARF-GSRFAG-EPLPSLAAVVQWLAQH-PQVTLFVEIKTESLD--------RFGLERVVDKVL 128 (229)
T ss_pred eccCCHHHHhhcccccCccc-ccccCC-ccCCCHHHHHHHHhhC-CCceEEEEecCCccc--------ccchhHHHHHHH
Confidence 99999999999976432211 234454 5999999999999763 247899999985421 123445555556
Q ss_pred HHcC-CCCcccccccCCCCEEEEccChhHHHHHhhcCCC-ceEEEEecccccccccccccccccchHHHHHHHhhhhhcC
Q 016353 206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG 283 (391)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 283 (391)
+.++ .. ++++++||++.+|++++++ |. +..+++.... .... ..+..++
T Consensus 129 ~~~~~~~----------~~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~---------------~~~~----~~~~~~~ 178 (229)
T cd08581 129 RALPAVA----------AQRVLISFDYDLLALAKQQ-GGPRTGWVLPDWD---------------DASL----AEADELQ 178 (229)
T ss_pred HHHHhcc----------CCeEEEeCCHHHHHHHHhc-CCCCeEEEeccCC---------------hHHH----HHHHhhC
Confidence 5554 32 5899999999999999999 54 4444442210 0001 1112233
Q ss_pred CCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 284 PWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
+ .++.+ ++.. . ..++.+|++|++|++||||+++++ .++.++||||||||+|
T Consensus 179 ~--~~~~~---~~~~-~-~~v~~~~~~G~~v~vWTVn~~~~~--------------~~l~~~GVdgiiTD~P 229 (229)
T cd08581 179 P--DYLFC---DKNL-L-PDTGDLWAGTWKWVIYEVNEPAEA--------------LALAARGVALIETDNI 229 (229)
T ss_pred C--CEEec---cccc-C-hhhHHHHhCCceEEEEEcCCHHHH--------------HHHHHhCCcEEEcCCC
Confidence 2 22322 2222 2 457889999999999999999999 6899999999999998
No 19
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.4e-47 Score=353.19 Aligned_cols=233 Identities=24% Similarity=0.280 Sum_probs=180.0
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------g-~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT--------------------G-A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC--------------------C-c
Confidence 589999999999999999999999999999999999999999999999999999976 4 6
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|+++|++||++++++.++ + ++||||+|+|++++. ..+.++||+|.+.... ....+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~~--------~-~~iptL~evl~~~~~--~~~~l~iEiK~~~~~~------~~~~~~~~v~~~i 122 (235)
T cd08565 60 VRDLTLAERKALRLRDSF--------G-EKIPTLEEVLALFAP--SGLELHVEIKTDADGT------PYPGAAALAAATL 122 (235)
T ss_pred eeeccHHHHhcCCCCCCC--------C-CCCCCHHHHHHHhhc--cCcEEEEEECCCCCCC------ccHHHHHHHHHHH
Confidence 999999999999998643 2 589999999999975 3478999999753100 1235889999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceE-EEEecccccccccccccccccchHHHHHHHhhhhhcCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 284 (391)
+++++. ++++|+||+++.|+++++. |...+ +++...... ....... ........+..++
T Consensus 123 ~~~~~~----------~~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~------~~~~~~~--~~~~~~~~~~~~~- 182 (235)
T cd08565 123 RRHGLL----------ERSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLE------RLGGELP--FLTATALKAHIVA- 182 (235)
T ss_pred HhCCCc----------CCEEEEECCHHHHHHHHhC-CCCcEEEEecccccc------ccccccc--hhhhhhccCcEEc-
Confidence 999976 5899999999999999999 86544 444321000 0000000 0000001111111
Q ss_pred CcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhH
Q 016353 285 WKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSL 358 (391)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l 358 (391)
+. ..+...++.+++.+| +|+.|++||||+++++ +++.++||||||||+|+.+
T Consensus 183 ----~~---~~~~~~~~~~v~~~~-~g~~v~~WTVn~~~~~--------------~~l~~~GVdgIiTD~P~~~ 234 (235)
T cd08565 183 ----VE---QSLLAATWELVRAAV-PGLRLGVWTVNDDSLI--------------RYWLACGVRQLTTDRPDLA 234 (235)
T ss_pred ----cC---cccccCCHHHHHHHh-CCCEEEEEccCCHHHH--------------HHHHHcCCCEEEeCCcccc
Confidence 11 122246889999987 4999999999999998 5899999999999999865
No 20
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.7e-47 Score=348.73 Aligned_cols=231 Identities=29% Similarity=0.427 Sum_probs=184.2
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||++|++.|+++||+||++||||++||+||.++.|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD--------------------G-A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC--------------------c-c
Confidence 589999999999999999999999999999999999999999999999999999876 4 7
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|+++||+||++++++.++. ..+.+ ++||||+|+|++++++ .+.++||+|.+. ....+++.+++++
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~-~~iptL~evl~~~~~~--~~~l~ieiK~~~---------~~~~~~~~~~~~~ 124 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG-EKVPTLEEYLAIVPKY--GKKLFIEIKHPR---------RGPEAEEELLKLL 124 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC-CcCCCHHHHHHHHHhc--CceEEEEeCCCc---------cCccHHHHHHHHH
Confidence 9999999999999987654 23333 6899999999999864 488999999851 2346889999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceE-EEEecccccccccccccccccchHHHHHHHhhhhhcCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 284 (391)
++++... ++++++||++..++++++..|...+ ++...... ... ....... ..+.++.+
T Consensus 125 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---------~~~-~~~~~~~--~~~~~i~~ 183 (233)
T cd08582 125 KESGLLP---------EQIVIISFDAEALKRVRELAPTLETLWLRNYKSP---------KED-PRPLAKS--GGAAGLDL 183 (233)
T ss_pred HHcCCCC---------CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCcc---------ccc-hhHHHHh--hCceEEcc
Confidence 9995432 6899999999999999999887544 44322110 000 0000000 11122222
Q ss_pred CcceeeecCCCCCC-CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 285 WKDTVVPVANNYSQ-TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 285 ~~~~l~~~~~~~~~-~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
++.. .++++++.+|++|++|++||+|+++++ .++.++||||||||+|+.
T Consensus 184 ----------~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~--------------~~l~~~GVdgi~TD~p~~ 233 (233)
T cd08582 184 ----------SYEKKLNPAFIKALRDAGLKLNVWTVDDAEDA--------------KRLIELGVDSITTNRPGR 233 (233)
T ss_pred ----------cccccCCHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHCCCCEEEcCCCCC
Confidence 2333 689999999999999999999999998 578999999999999973
No 21
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=9.2e-47 Score=347.54 Aligned_cols=230 Identities=32% Similarity=0.491 Sum_probs=185.5
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
++||||||+++.+||||++||++|++.|+++||+|||+||||++||+||.++.|+|+++ |
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------~ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK--------------------G 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC--------------------C
Confidence 46899999999999999999999999999999999999999999999999999999876 4
Q ss_pred ceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (391)
.|+++||+||++++.+.+++ +.+. .+++|||+|+|+.+++. .+.++||+|.+... ...+++.+++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~-~~~iptL~evl~~~~~~--~~~l~leiK~~~~~--------~~~~~~~l~~ 125 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFT-GEKIPTLEEVLDLLKDK--DLLLNIEIKTDVIH--------YPGIEKKVLE 125 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCC-CCcCCCHHHHHHHHHhc--CcEEEEEECCCCCc--------ChhHHHHHHH
Confidence 69999999999999987654 2233 35899999999999853 48999999986421 1357899999
Q ss_pred HHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcC
Q 016353 204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG 283 (391)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 283 (391)
+++++++. ++++++||++..++++++..|...+.++...... .....+.. .+
T Consensus 126 ~l~~~~~~----------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------------~~~~~~~~----~~ 177 (230)
T cd08563 126 LVKEYNLE----------DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQ--------------DPKDYAKK----IG 177 (230)
T ss_pred HHHHcCCC----------CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCccc--------------CHHHHHHH----hC
Confidence 99999865 5899999999999999999886554433321110 00111111 11
Q ss_pred CCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 284 PWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
...+.+ ++..+++++++.+|++|+.|++||+|+++++ .++.++||||||||+|
T Consensus 178 --~~~v~~---~~~~~~~~~i~~~~~~g~~v~~Wtvn~~~~~--------------~~~~~~GVdgi~TD~P 230 (230)
T cd08563 178 --ADSLHP---DFKLLTEEVVEELKKRGIPVRLWTVNEEEDM--------------KRLKDLGVDGIITNYP 230 (230)
T ss_pred --CEEEcc---CchhcCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHHCCCCEEeCCCC
Confidence 112222 3455689999999999999999999999988 5899999999999998
No 22
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=4.5e-47 Score=356.00 Aligned_cols=250 Identities=28% Similarity=0.330 Sum_probs=184.1
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
|++|||||+++.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~--------------------~ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS--------------------G 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc--------------------e
Confidence 78999999999999999999999999999999999999999999999999999999986 4
Q ss_pred ceecccCHHHHccccccccccCCc------cccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRD------QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF 197 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~------~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~ 197 (391)
.|+++|++||++++++.++...+ ..+. .++||||+|+|+.+++ +.++||+|.+.. ..+
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~----~~l~iEiK~~~~----------~~~ 124 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG-DGRIPTLEEVFKAFPD----TPINIDIKSPDA----------EEL 124 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCC-CCcCCcHHHHHHhCCC----CeEEEEECCCCH----------HHH
Confidence 79999999999999987764221 1122 3589999999998842 789999997531 358
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCce-EEEEecccccccccccccccccchHHHHHHH
Q 016353 198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIK 276 (391)
Q Consensus 198 ~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 276 (391)
++.++++++++++. ++++++||+++.|+++++..|... .++.......... ..+....... ...
T Consensus 125 ~~~v~~~i~~~~~~----------~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~ 189 (264)
T cd08575 125 IAAVLDLLEKYKRE----------DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLA--LGYTGLLPFV---PIK 189 (264)
T ss_pred HHHHHHHHHhcccc----------ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHH--hheeccCCCC---CCC
Confidence 89999999999976 589999999999999999877532 2222110000000 0000000000 000
Q ss_pred hhhhhcCCCccee-------eecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 277 EYCVGIGPWKDTV-------VPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 277 ~~~~~i~~~~~~l-------~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
..+..+.+....+ .....++...++++++.+|++|++|++||||+++++ +++.++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~~~--------------~~l~~~GVdg 255 (264)
T cd08575 190 ESFFEIPRPVIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDEEDF--------------EEAFDLGADG 255 (264)
T ss_pred ceEEEeecccEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCHHHH--------------HHHHhcCCCE
Confidence 0000010000000 001224556799999999999999999999999999 6899999999
Q ss_pred EEeCCchhH
Q 016353 350 LFTDFPGSL 358 (391)
Q Consensus 350 IiTD~P~~l 358 (391)
||||+|+.+
T Consensus 256 IiTD~P~~~ 264 (264)
T cd08575 256 VMTDSPTKL 264 (264)
T ss_pred EEeCCcccC
Confidence 999999863
No 23
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.4e-46 Score=353.17 Aligned_cols=241 Identities=25% Similarity=0.343 Sum_probs=188.0
Q ss_pred CCCEEEecCCCCCC--CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCccc--------ccccCCcccccccc
Q 016353 42 SRPYNLAHRGSNGE--FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD--------TTNIADHKEFADRK 111 (391)
Q Consensus 42 ~~p~iiaHRG~~~~--~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r--------~t~~~~~~~~~~~~ 111 (391)
.+|+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.++++ ++++.
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~--------- 72 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGF--------- 72 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCCc---------
Confidence 46899999999887 999999999999999999999999999999999999987665 44433
Q ss_pred ccccccCcccccceecccCHHHHccccccccccCCcc---ccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhcccc
Q 016353 112 RTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQ---QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQH 188 (391)
Q Consensus 112 ~~~~~~g~~~~g~~v~dlt~~EL~~l~~~~~~~~r~~---~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 188 (391)
| .|+++|++||++++++.|+.-++. .+.+ ++||||+|+|+.+++ .+.++||||.+.
T Consensus 73 -----------~-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~-~~iptL~evl~~~~~---~~~l~iEiK~~~----- 131 (265)
T cd08564 73 -----------K-NINDLSLDEITRLHFKQLFDEKPCGADEIKG-EKIPTLEDVLVTFKD---KLKYNIELKGRE----- 131 (265)
T ss_pred -----------c-chhhCcHHHHhhcccCcccccCcccccccCC-ccCCCHHHHHHHhcc---CcEEEEEeCCCc-----
Confidence 4 699999999999999987642211 1233 699999999999964 489999999753
Q ss_pred ccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccCh-hHHHHHhhcCCC----ceEEEEeccccccccccccc
Q 016353 189 VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP-TSLVYISNKTDS----PKIFLIDDVDILTEDTNQSY 263 (391)
Q Consensus 189 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~-~~l~~l~~~~p~----~~~~l~~~~~~~~~~~~~~~ 263 (391)
..+++.++++++++++. ++++|+||++ ..++++++..|. +..+++...... .+
T Consensus 132 ------~~~~~~v~~~l~~~~~~----------~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------~~ 189 (265)
T cd08564 132 ------VGLGERVLNLVEKYGMI----------LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP------SP 189 (265)
T ss_pred ------hhHHHHHHHHHHHcCCC----------CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc------cc
Confidence 35789999999999976 5899999999 999999998874 445555432110 00
Q ss_pred ccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEe----ecCcccccccccCCCchHHHH
Q 016353 264 SEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYT----YRNEHQFLHFNFLQDPYREYD 339 (391)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WT----vn~~~~~~~~~~~~~~~~~~~ 339 (391)
.+...... ..+. ..+.+ .+..+++++++.+|++|+.|++|| +|+++.+
T Consensus 190 -----~~~~~~~~----~~~~--~~v~~---~~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~-------------- 241 (265)
T cd08564 190 -----LDFLEQAK----YYNA--TWVNF---SYDFWTEEFVKKAHENGLKVMTYFDEPVNDNEEDY-------------- 241 (265)
T ss_pred -----ccHHHHHH----hcCC--ceeee---chhhhhHHHHHHHHHcCCEEEEecCCCCCCCHHHH--------------
Confidence 01112111 1111 12222 345568999999999999999999 6777777
Q ss_pred HHHHHcCccEEEeCCchhHHHHH
Q 016353 340 YWINKIGVDGLFTDFPGSLHNYQ 362 (391)
Q Consensus 340 ~~l~~~GVdgIiTD~P~~l~~~~ 362 (391)
+++.++||||||||+|+.+.+++
T Consensus 242 ~~l~~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 242 KVYLELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred HHHHHcCCCEEEcCCHHHHHHhh
Confidence 57899999999999999999886
No 24
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=1.1e-46 Score=346.09 Aligned_cols=223 Identities=24% Similarity=0.269 Sum_probs=173.9
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccc
Q 016353 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF 124 (391)
Q Consensus 45 ~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~ 124 (391)
+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~--------------------g- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD--------------------L- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC--------------------c-
Confidence 4799999999999999999999999999999999999999999999999999999976 4
Q ss_pred eecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHH
Q 016353 125 FVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204 (391)
Q Consensus 125 ~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~ 204 (391)
.|+++|++||++++++ +++||||+|+|+++++ ...++||||.+ ..++.++++
T Consensus 60 ~v~~~t~~eL~~l~~~------------g~~iPtL~evl~~~~~---~~~l~iEiK~~-------------~~~~~~~~~ 111 (226)
T cd08568 60 KVKELTYKELKKLHPG------------GELIPTLEEVFRALPN---DAIINVEIKDI-------------DAVEPVLEI 111 (226)
T ss_pred eeecCCHHHHhhCCCC------------CCcCCCHHHHHHhcCC---CcEEEEEECCc-------------cHHHHHHHH
Confidence 7999999999999874 2589999999999853 36799999974 256789999
Q ss_pred HHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceE-EEEecccccccccccccccccchHHHHHHHh-hhhhc
Q 016353 205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKE-YCVGI 282 (391)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~i 282 (391)
++++++. ++++++||+++.|+++++..|...+ +++..... ... ....... .+..+
T Consensus 112 l~~~~~~----------~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~-----------~~~--~~~~~~~~~~~~~ 168 (226)
T cd08568 112 VEKFNAL----------DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEE-----------GFS--IPELHEKLKLYSL 168 (226)
T ss_pred HHHcCCC----------CcEEEEECCHHHHHHHHHhCCCCcEEEEeecccc-----------ccC--HHHHHHhcCCcEe
Confidence 9999875 5899999999999999999886555 44432100 000 0011111 11112
Q ss_pred CCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
++....+. .....+++++++.+|++|++|++||||+++.+ +++... |||||||+|+.
T Consensus 169 ~~~~~~~~---~~~~~~~~~~v~~~~~~G~~v~~WTvn~~~~~--------------~~l~~~-vdgiiTD~p~~ 225 (226)
T cd08568 169 HVPIDAIG---YIGFEKFVELLRLLRKLGLKIVLWTVNDPELV--------------PKLKGL-VDGVITDDVEK 225 (226)
T ss_pred ccchhhhc---cccccccHHHHHHHHHCCCEEEEEcCCCHHHH--------------HHHHhh-CCEEEccCccc
Confidence 22111110 00112368999999999999999999999888 466665 99999999985
No 25
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=7.4e-47 Score=345.87 Aligned_cols=220 Identities=26% Similarity=0.331 Sum_probs=180.5
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||++|++.|+++||+|||+||||++||+||.++.|+|++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~-~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN--------------------K-K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC--------------------C-C
Confidence 689999999999999999999999999999999999999999999999999999876 4 6
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|.++|++||++++++.++ .+ ++||||+|+|++++++ .+.++||||.+.. ....+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~~-------~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~--------~~~~~~~~v~~~l 121 (220)
T cd08579 60 VWDLTLEELKKLTIGENG-------HG-AKIPSLDEYLALAKGL--KQKLLIELKPHGH--------DSPDLVEKFVKLY 121 (220)
T ss_pred hhhCCHHHHhcCcCccCC-------CC-CcCCCHHHHHHHhhcc--CCeEEEEECCCCC--------CCHHHHHHHHHHH
Confidence 999999999999987642 23 5899999999999753 4789999998642 1346889999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 285 (391)
+++++. ++++|+||++..++.+++..|...+.++..... ... ....+..
T Consensus 122 ~~~~~~----------~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~---------~~~--------~~~~~~~---- 170 (220)
T cd08579 122 KQNLIE----------NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNI---------GNL--------PKTNVDF---- 170 (220)
T ss_pred HHcCCC----------cCeEEEeCCHHHHHHHHHHCCCCeEEEEEeccc---------Ccc--------cccCceE----
Confidence 999876 589999999999999999888654433322111 000 0011111
Q ss_pred cceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 286 KDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
+. .++..+++++++.+|++|++|++||+|+++++ +++.++|||||+||+|
T Consensus 171 ---~~---~~~~~~~~~~v~~~~~~G~~v~~wtvn~~~~~--------------~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 171 ---YS---IEYSTLNKEFIRQAHQNGKKVYVWTVNDPDDM--------------QRYLAMGVDGIITDYP 220 (220)
T ss_pred ---Ee---eehhhcCHHHHHHHHHCCCEEEEEcCCCHHHH--------------HHHHHcCCCEEeCCCC
Confidence 11 13455689999999999999999999999988 5789999999999998
No 26
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=8.5e-46 Score=345.92 Aligned_cols=242 Identities=25% Similarity=0.320 Sum_probs=184.5
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++. | .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~--------------------g-~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT--------------------G-L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC--------------------c-e
Confidence 589999999999999999999999999999999999999999999999999999976 4 6
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
|+++||+||++++++.+++.+ +.|.+ ++||||+|+|+++++. .+.++||+|.+. ..+++.+++++
T Consensus 60 v~~~t~~el~~l~~~~~~~~~-~~~~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~-----------~~~~~~v~~~l 124 (258)
T cd08573 60 VAELTWEELRKLNAAAKHRLS-SRFPG-EKIPTLEEAVKECLEN--NLRMIFDVKSNS-----------SKLVDALKNLF 124 (258)
T ss_pred EecCcHHHHhhCCCCCCCCCc-cccCC-CCCCCHHHHHHHHHhc--CCEEEEEeCCCc-----------HHHHHHHHHHH
Confidence 999999999999999876532 23444 5999999999999754 378999999753 25788999999
Q ss_pred HHcC-CCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEec-ccccccc---cccc---cccccchHHHHHHHh
Q 016353 206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDD-VDILTED---TNQS---YSEITSDAYLNYIKE 277 (391)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~-~~~~~~~---~~~~---~~~~~~~~~~~~i~~ 277 (391)
++++ +. ++++++||++..++++++..|...+.++.. ....... .... +... .......+..
T Consensus 125 ~~~~~~~----------~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 193 (258)
T cd08573 125 KKYPGLY----------DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHF-LYSMLDVILE 193 (258)
T ss_pred HHCCCcc----------CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHH-HHHHHHHHHH
Confidence 9998 54 589999999999999999988755544332 1100000 0000 0000 0000111111
Q ss_pred hh------hhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHH-cCccEE
Q 016353 278 YC------VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINK-IGVDGL 350 (391)
Q Consensus 278 ~~------~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~-~GVdgI 350 (391)
+. ...++ +.+.+ ++..+++++++.+|++|++|++||||+++++ +++.+ +||| |
T Consensus 194 ~~~~~~~~~~~~~--~~v~~---~~~~~~~~~v~~~~~~G~~v~vWTVn~~~~~--------------~~l~~~~GVd-i 253 (258)
T cd08573 194 WSLHSWLPYFLGV--SALLI---HKDDISSAYVRYWRARGIRVIAWTVNTPTEK--------------QYFAKTLNVP-Y 253 (258)
T ss_pred HHHHhhhhhhcCe--eEEEe---chHhcCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHHHhCCC-e
Confidence 10 11121 23332 4666799999999999999999999999998 58999 9999 9
Q ss_pred EeCC
Q 016353 351 FTDF 354 (391)
Q Consensus 351 iTD~ 354 (391)
|||+
T Consensus 254 iTD~ 257 (258)
T cd08573 254 ITDS 257 (258)
T ss_pred ecCC
Confidence 9997
No 27
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=1.9e-45 Score=339.59 Aligned_cols=229 Identities=24% Similarity=0.332 Sum_probs=176.5
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.++.|++++. |..
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--------------------~~~ 60 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--------------------GLI 60 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--------------------CCE
Confidence 589999999999999999999999999999999999999999999999999999876 127
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhc-CCceeEEEeecCchhccccccccCcccHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~ 204 (391)
|+++|++||++++++. .+.++||||+|+|++++.+ ++.+.++||+|... ....+.+.+.++
T Consensus 61 v~~~t~~eL~~l~~~~---------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~---------~~~~~~~~v~~~ 122 (234)
T cd08570 61 IDDSTWDELSHLRTIE---------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDN---------DPEILFKLIAEM 122 (234)
T ss_pred eccCCHHHHhhccccc---------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCC---------CHHHHHHHHHHH
Confidence 9999999999998863 1235899999999999754 13588999999743 123567788888
Q ss_pred HHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCce-EEEEecccccccccccccccccchHHHHHHHhh---hh
Q 016353 205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY---CV 280 (391)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~ 280 (391)
+++++... |..++++++||++..++++++..|... .++..... . ...+..+ +.
T Consensus 123 i~~~~~~~------~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~----------------~-~~~~~~~~~~~~ 179 (234)
T cd08570 123 LAVKPDLD------FWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD----------------Y-ARHFLNYSEKLV 179 (234)
T ss_pred HHhcCCcc------cccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH----------------H-HHHHhccccccc
Confidence 88876421 123689999999999999999988544 34432110 0 0001111 11
Q ss_pred hcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 281 ~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
++++. ... .+..+++++++.+|++|++|++||||+++++ +++.++||||||||+|
T Consensus 180 ~~~~~-----~~~-~~~~~~~~~v~~~~~~gl~v~~wTvn~~~~~--------------~~l~~~gvdgiiTD~P 234 (234)
T cd08570 180 GISMH-----FVS-LWGPFGQAFLPELKKNGKKVFVWTVNTEEDM--------------RYAIRLGVDGVITDDP 234 (234)
T ss_pred eEEee-----eeh-hhcccCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHHCCCCEEEeCCC
Confidence 12110 000 0111589999999999999999999999998 5899999999999998
No 28
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-45 Score=345.74 Aligned_cols=253 Identities=25% Similarity=0.368 Sum_probs=185.5
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccc
Q 016353 45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF 124 (391)
Q Consensus 45 ~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~ 124 (391)
.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+++......++. ...|
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~----------~~~~- 70 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLP----------YEGP- 70 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCccc----------ccCc-
Confidence 48999999999999999999999999999999999999999999999999998653211000000 0113
Q ss_pred eecccCHHHHccccccccccCC--ccccC-----CCccccCHHHHHHHHHhcC-CceeEEEeecCchhccccccccCccc
Q 016353 125 FVVDFTLEELKTLRAKQRYSFR--DQQYN-----GKFPIITFEEYISIALDAQ-RVVGIYPEMKNPVFINQHVKWADGKK 196 (391)
Q Consensus 125 ~v~dlt~~EL~~l~~~~~~~~r--~~~~~-----~~~~ipTLeEvL~~~~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~ 196 (391)
.|+++|++||++++++.++..+ +..|. ..++||||+|+|+++++.+ +.+.++||+|.+..... ..+....
T Consensus 71 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~--~~~~~~~ 148 (263)
T cd08567 71 ALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDI--LHPPPEE 148 (263)
T ss_pred chhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccc--cCccHHH
Confidence 7999999999999998765110 11111 1258999999999998642 24789999997542210 0112346
Q ss_pred HHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceE-EEEecccccccccccccccccchHHHHHH
Q 016353 197 FEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYI 275 (391)
Q Consensus 197 ~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 275 (391)
+++.++++++++++. ++++|+||+++.++.++++.|...+ +++..... ......+
T Consensus 149 ~~~~v~~~l~~~~~~----------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------------~~~~~~~ 204 (263)
T cd08567 149 FVDAVLAVIRKAGLE----------DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL--------------GNLPRAA 204 (263)
T ss_pred HHHHHHHHHHHcCCC----------CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc--------------cCHHHHH
Confidence 889999999999875 5899999999999999999886544 44422100 0011111
Q ss_pred HhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 276 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
. ..+. ..+.+ .+..+++++++.+|++|+.|++||+|+++.+ .++.++||||||||+|
T Consensus 205 ~----~~~~--~~~~~---~~~~~~~~~i~~~~~~G~~v~vwtvn~~~~~--------------~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 205 K----KLGA--DIWSP---YFTLVTKELVDEAHALGLKVVPWTVNDPEDM--------------ARLIDLGVDGIITDYP 261 (263)
T ss_pred H----HhCC--cEEec---chhhcCHHHHHHHHHCCCEEEEecCCCHHHH--------------HHHHHcCCCEEEcCCC
Confidence 1 1111 12222 3455789999999999999999999999887 5789999999999999
Q ss_pred hh
Q 016353 356 GS 357 (391)
Q Consensus 356 ~~ 357 (391)
++
T Consensus 262 ~~ 263 (263)
T cd08567 262 DL 263 (263)
T ss_pred CC
Confidence 74
No 29
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=2.1e-45 Score=349.12 Aligned_cols=260 Identities=22% Similarity=0.289 Sum_probs=186.1
Q ss_pred CEEEecCCCCCCCc--------hhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCcccccccccccc
Q 016353 44 PYNLAHRGSNGEFP--------EETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115 (391)
Q Consensus 44 p~iiaHRG~~~~~p--------ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~ 115 (391)
+.||||||+++.+| |||++||+.|+++|+|+||+|||+||||++||+||.+++|+ ++.
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~------------- 67 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD------------- 67 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC-------------
Confidence 67999999999999 99999999999999999999999999999999999999995 443
Q ss_pred ccCcccccceecccCHHHHccccccccc-cCCccccC----CC---ccccCHHHHHHHHHhcCCceeEEEeecCchhccc
Q 016353 116 VQGVNTTGFFVVDFTLEELKTLRAKQRY-SFRDQQYN----GK---FPIITFEEYISIALDAQRVVGIYPEMKNPVFINQ 187 (391)
Q Consensus 116 ~~g~~~~g~~v~dlt~~EL~~l~~~~~~-~~r~~~~~----~~---~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~ 187 (391)
| .|.++|++||++++..... .+.+..|. +. .+||||+|+|+.++ ..+.++||||.+.....
T Consensus 68 -------~-~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~---~~~~l~IEiK~~~~~~~ 136 (286)
T cd08606 68 -------V-PIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLP---KSVGFNIELKYPMLHEA 136 (286)
T ss_pred -------C-ccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCC---CccceEEEEecCCcchh
Confidence 3 6999999999999743211 01111221 21 36899999999984 24789999997542110
Q ss_pred ccc-----ccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCce-EEEEeccccccccccc
Q 016353 188 HVK-----WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQ 261 (391)
Q Consensus 188 ~~~-----~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~-~~l~~~~~~~~~~~~~ 261 (391)
... .++.+.+++.++++++++++. ++++|+||++++|+.++++.|... .+++... ... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----------~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~-~~~-~--- 201 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----------RNIIFSSFTPDICILLSLKQPGYPVLFLTEAG-KAP-D--- 201 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----------CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCC-CCc-c---
Confidence 000 001135778999999999875 689999999999999999988544 4544321 100 0
Q ss_pred ccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEee--cCcccccccccCCCchHHHH
Q 016353 262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTY--RNEHQFLHFNFLQDPYREYD 339 (391)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTv--n~~~~~~~~~~~~~~~~~~~ 339 (391)
..... ........++...+. ..+.+ ...+..+++.+++.+|++|+.|++||| |+++.+
T Consensus 202 --~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~~~-------------- 261 (286)
T cd08606 202 --MDVRA-ASLQEAIRFAKQWNL--LGLVS-AAEPLVMCPRLIQVVKRSGLVCVSYGVLNNDPENA-------------- 261 (286)
T ss_pred --CCchh-hcHHHHHHHHHHCCC--eEEEe-chHHhhhChHHHHHHHHCCcEEEEECCccCCHHHH--------------
Confidence 00000 001111122222222 11221 113345689999999999999999999 888888
Q ss_pred HHHHHcCccEEEeCCchhHHHHHh
Q 016353 340 YWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 340 ~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
+++.++||||||||+|+.+++.+.
T Consensus 262 ~~l~~~GVdgIiTD~p~~~~~~~~ 285 (286)
T cd08606 262 KTQVKAGVDAVIVDSVLAIRRGLT 285 (286)
T ss_pred HHHHHcCCCEEEECCHHHHHHHhc
Confidence 579999999999999999998764
No 30
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-45 Score=342.87 Aligned_cols=238 Identities=30% Similarity=0.390 Sum_probs=185.8
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
||||||+++.+||||++||+.|++.|+++||+|||+||||++||+||.++.|++++. | .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~--------------------~-~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT--------------------G-P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC--------------------C-c
Confidence 589999999999999999999999999999999999999999999999999999987 3 6
Q ss_pred ecccCHHHHccccccccccCCcc-----ccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQ-----QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK 200 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~-----~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~ 200 (391)
|.++|++||++++.+.+|..++. .+. .+++|||+|+|+.+++ +.++||+|.+. ..+++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-----------~~~~~~ 123 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-----------PAAAAA 123 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-----------hhHHHH
Confidence 99999999999998876532211 112 2599999999999852 78999999852 358899
Q ss_pred HHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhh-
Q 016353 201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC- 279 (391)
Q Consensus 201 v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 279 (391)
++++++++++. ++++++||++.+++++++..|...+.+.... .........
T Consensus 124 ~~~~l~~~~~~----------~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~------------------~~~~~~~~~~ 175 (249)
T cd08561 124 LADLIERYGAQ----------DRVLVASFSDRVLRRFRRLCPRVATSAGEGE------------------VAAFVLASRL 175 (249)
T ss_pred HHHHHHHcCCC----------CcEEEEECCHHHHHHHHHHCCCcceeccHHH------------------HHHHHHHhhc
Confidence 99999999865 5899999999999999999886544332110 000000000
Q ss_pred ---hhcCCCcceee-ec-CCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 280 ---VGIGPWKDTVV-PV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 280 ---~~i~~~~~~l~-~~-~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
.........+. +. ..++..+++.+++.+|++|+.|++||||+++.+ .++.++|||||+||+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVN~~~~~--------------~~l~~~gVdgIiTD~ 241 (249)
T cd08561 176 GLGSLYSPPYDALQIPVRYGGVPLVTPRFVRAAHAAGLEVHVWTVNDPAEM--------------RRLLDLGVDGIITDR 241 (249)
T ss_pred ccccccCCCCcEEEcCcccCCeecCCHHHHHHHHHCCCEEEEEecCCHHHH--------------HHHHhcCCCEEEcCC
Confidence 00001111111 11 123346789999999999999999999999998 579999999999999
Q ss_pred chhHHHHH
Q 016353 355 PGSLHNYQ 362 (391)
Q Consensus 355 P~~l~~~~ 362 (391)
|+.+++++
T Consensus 242 p~~~~~~~ 249 (249)
T cd08561 242 PDLLLEVL 249 (249)
T ss_pred HHHHHhhC
Confidence 99998763
No 31
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=6.1e-45 Score=346.76 Aligned_cols=265 Identities=21% Similarity=0.271 Sum_probs=184.4
Q ss_pred EEEecCCCC-------CCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCcccccccccccccc
Q 016353 45 YNLAHRGSN-------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ 117 (391)
Q Consensus 45 ~iiaHRG~~-------~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~ 117 (391)
+.|||||++ +.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|++++... . .
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~--~---------~ 69 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD--S---------D 69 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc--c---------C
Confidence 368999984 789999999999999999999999999999999999999999999886410 0 0
Q ss_pred CcccccceecccCHHHHccccccccccCCccccC---------CCccccCHHHHHHHHHhcCCceeEEEeecCchhcccc
Q 016353 118 GVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYN---------GKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQH 188 (391)
Q Consensus 118 g~~~~g~~v~dlt~~EL~~l~~~~~~~~r~~~~~---------~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 188 (391)
+....+..|.++||+||++++++.++.+.+..|. ..++||||+|+|+.+++ .+.++||||.+......
T Consensus 70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~lnIEiK~~~~~~~~ 146 (290)
T cd08607 70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPE---DVGFNIEIKWPQQQKDG 146 (290)
T ss_pred ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCC---ccceEEEEecCcccccc
Confidence 0000112699999999999998764332222222 13589999999999853 47899999976421110
Q ss_pred c------cccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC-ceEEEEeccccccccccc
Q 016353 189 V------KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQ 261 (391)
Q Consensus 189 ~------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-~~~~l~~~~~~~~~~~~~ 261 (391)
. .+.+.+.+++.+++.+.+++.. ++++|+||++.+|..++++.|. +..++...... ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----------~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~----~~~ 212 (290)
T cd08607 147 SWESELFTYFDRNLFVDIILKIVLEHAGK----------RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQ----RYP 212 (290)
T ss_pred ccccccccccchhHHHHHHHHHHHHhCCC----------CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCC----ccc
Confidence 0 0112235788999999998764 5899999999999999999885 55555432210 000
Q ss_pred ccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEee--cCcccccccccCCCchHHHH
Q 016353 262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTY--RNEHQFLHFNFLQDPYREYD 339 (391)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTv--n~~~~~~~~~~~~~~~~~~~ 339 (391)
.+...... .+.....++...+.. .+.. ...+...++++++.+|++|+.|++||+ |+++.+
T Consensus 213 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~-------------- 274 (290)
T cd08607 213 EFMDLRTR-TFEIAVNFAQAEELL--GVNL-HSEDLLKDPSQIELAKSLGLVVFCWGDDLNDPENR-------------- 274 (290)
T ss_pred cccchHHH-hHHHHHHHHHHcCCc--eeEe-chhhhhcChHHHHHHHHcCCEEEEECCCCCCHHHH--------------
Confidence 01000000 011111122222211 1111 123455689999999999999999999 999888
Q ss_pred HHHHHcCccEEEeCCc
Q 016353 340 YWINKIGVDGLFTDFP 355 (391)
Q Consensus 340 ~~l~~~GVdgIiTD~P 355 (391)
.++.++||||||||++
T Consensus 275 ~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 275 KKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHcCCCEEEecCC
Confidence 5799999999999985
No 32
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.1e-45 Score=345.84 Aligned_cols=264 Identities=21% Similarity=0.291 Sum_probs=187.6
Q ss_pred EEEecCCCC--------CCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccc
Q 016353 45 YNLAHRGSN--------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMV 116 (391)
Q Consensus 45 ~iiaHRG~~--------~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~ 116 (391)
+||||||++ +.+||||++||+.|+++|+|+||+|||+||||++||+||.++.|++++... .
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~--~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG--S--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc--c---------
Confidence 489999997 689999999999999999999999999999999999999999999986531 0
Q ss_pred cCcccccceecccCHHHHccccccccccCCcccc--------------CCCccccCHHHHHHHHHhcCCceeEEEeecCc
Q 016353 117 QGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQY--------------NGKFPIITFEEYISIALDAQRVVGIYPEMKNP 182 (391)
Q Consensus 117 ~g~~~~g~~v~dlt~~EL~~l~~~~~~~~r~~~~--------------~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~ 182 (391)
++....+..|.++|++||++++.+.++++.++.+ ...++||||+|+|+.++. .++++||||.+
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~---~~~l~IEiK~~ 146 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPK---DLGFNIEIKYP 146 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCC---ccceEEEEecC
Confidence 0000012279999999999999987754322111 113589999999999853 47899999976
Q ss_pred hhcccc----ccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC-ceEEEEeccccccc
Q 016353 183 VFINQH----VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTE 257 (391)
Q Consensus 183 ~~~~~~----~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~-~~~~l~~~~~~~~~ 257 (391)
...... ..++....+++.++++++++++. ++++++||++.+|..+++..|. +.++++......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----------~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~-- 214 (293)
T cd08572 147 QLLEDGEGELTPYFERNAFVDTILAVVFEHAGG----------RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNE-- 214 (293)
T ss_pred CccccccccccchHHHHHHHHHHHHHHHHhCCC----------CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCc--
Confidence 532110 01112246889999999999876 5899999999999999999885 555555322100
Q ss_pred ccccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEee--cCcccccccccCCCch
Q 016353 258 DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTY--RNEHQFLHFNFLQDPY 335 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTv--n~~~~~~~~~~~~~~~ 335 (391)
..+... ....+..+..++...+. ..+.+ ...+...++.+++.+|++|+.|++||+ |+++.+
T Consensus 215 ---~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~---------- 277 (293)
T cd08572 215 ---VEHMDP-RRRSLQAAVNFALAEGL--LGVVL-HAEDLLKNPSLISLVKALGLVLFTYGDDNNDPENV---------- 277 (293)
T ss_pred ---ccccch-hhhhHHHHHHHHHHCCC--eEEEe-chHHhhcCcHHHHHHHHcCcEEEEECCCCCCHHHH----------
Confidence 000000 00112222222222222 11211 112334589999999999999999999 888887
Q ss_pred HHHHHHHHHcCccEEEeCCc
Q 016353 336 REYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 336 ~~~~~~l~~~GVdgIiTD~P 355 (391)
.++.++||||||||+|
T Consensus 278 ----~~l~~~GVdgIiTD~~ 293 (293)
T cd08572 278 ----KKQKELGVDGVIYDRV 293 (293)
T ss_pred ----HHHHHcCCCEEEecCC
Confidence 5899999999999986
No 33
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=4e-44 Score=339.68 Aligned_cols=252 Identities=21% Similarity=0.231 Sum_probs=177.5
Q ss_pred EEecCCCCC-----------CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccc
Q 016353 46 NLAHRGSNG-----------EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTC 114 (391)
Q Consensus 46 iiaHRG~~~-----------~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~ 114 (391)
+|||||++. .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc-----------
Confidence 799999765 2459999999999999999999999999999999999999999988521
Q ss_pred cccCcccccceecccCHHHHccccccccccCCc----------cc---c--CCCccccCHHHHHHHHHhcCCceeEEEee
Q 016353 115 MVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----------QQ---Y--NGKFPIITFEEYISIALDAQRVVGIYPEM 179 (391)
Q Consensus 115 ~~~g~~~~g~~v~dlt~~EL~~l~~~~~~~~r~----------~~---~--~~~~~ipTLeEvL~~~~~~~~~~~l~iEi 179 (391)
..| .|.++||+||++++++.++.+.. .. + ...++||||+|+|+.++. .+.++|||
T Consensus 71 ------~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~l~IEi 140 (282)
T cd08605 71 ------ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPP---SLGFNIEL 140 (282)
T ss_pred ------Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCC---CccEEEEE
Confidence 014 69999999999999986542110 00 0 113689999999999843 47899999
Q ss_pred cCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCce-EEEEecccccccc
Q 016353 180 KNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTED 258 (391)
Q Consensus 180 K~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~-~~l~~~~~~~~~~ 258 (391)
|.+...... ...-..+++.++++++++++. ++++|+||++++|+.++++.|... .+++.....
T Consensus 141 K~~~~~~~~--~~~~~~~~~~v~~~i~~~~~~----------~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~---- 204 (282)
T cd08605 141 KFGDDNKTE--AEELVRELRAILAVCKQHAPG----------RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPY---- 204 (282)
T ss_pred ecCccccch--HHHHHHHHHHHHHHHHhcCCC----------CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCc----
Confidence 975421000 000012357788899988875 589999999999999999988644 455432110
Q ss_pred cccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEee--cCcccccccccCCCchH
Q 016353 259 TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTY--RNEHQFLHFNFLQDPYR 336 (391)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTv--n~~~~~~~~~~~~~~~~ 336 (391)
.+.... .........++..++. ..+.+. ......++++++.+|++|+.|++||+ |+++.+
T Consensus 205 ---~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~~~----------- 266 (282)
T cd08605 205 ---THNDPR-RNSIEAAIQVALEGGL--QGIVSE-VKVLLRNPTAVSLVKASGLELGTYGKLNNDAEAV----------- 266 (282)
T ss_pred ---cccCch-hhhHHHHHHHHHHcCC--ceEEec-HHHhhcCcHHHHHHHHcCcEEEEeCCCCCCHHHH-----------
Confidence 000000 0001111112222222 123221 11123589999999999999999999 999988
Q ss_pred HHHHHHHHcCccEEEeCCc
Q 016353 337 EYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 337 ~~~~~l~~~GVdgIiTD~P 355 (391)
+++.++||||||||++
T Consensus 267 ---~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 267 ---ERQADLGVDGVIVDHV 282 (282)
T ss_pred ---HHHHHcCCCEEEeCCC
Confidence 5899999999999986
No 34
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=7.2e-44 Score=329.75 Aligned_cols=237 Identities=26% Similarity=0.264 Sum_probs=174.7
Q ss_pred EEEecCCCCCC-CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 45 YNLAHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 45 ~iiaHRG~~~~-~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. |
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK--------------------G 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC--------------------C
Confidence 47999999998 99999999999999999999999999999999999999999999986 4
Q ss_pred ceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (391)
.|.++|++||++++++.++ ..+.+ ++||||+|+|+.+++. +.++||+|.+ ..+.+++
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~-~~iptL~evl~~~~~~---~~l~iEiK~~--------------~~~~~~~ 117 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD-EKVPTLEEALAWAKGK---ILLNLDLKDA--------------DLDEVIA 117 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC-CCCCCHHHHHHhhhcC---cEEEEEECch--------------HHHHHHH
Confidence 6999999999999998775 23344 6999999999999752 7899999963 3578899
Q ss_pred HHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcC
Q 016353 204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG 283 (391)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 283 (391)
+++++++. ++++++||+++.++.++++.|...+.++..... .. ..........++
T Consensus 118 ~~~~~~~~----------~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~--------------~~-~~~~~~~~~~~~ 172 (240)
T cd08566 118 LVKKHGAL----------DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAE--------------DL-DEEEARAIDALN 172 (240)
T ss_pred HHHHcCCc----------ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCc--------------ch-hHHHHhcccccc
Confidence 99999875 589999999999999999988755544322100 00 000001111111
Q ss_pred CCcceeeecCCCCCC-CCHHHHHHHHHc-CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 284 PWKDTVVPVANNYSQ-TPTDLVARAHAL-DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 284 ~~~~~l~~~~~~~~~-~~~~~v~~~~~~-Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
+ ..+.+ .+.. ..+..+..+|+. |++|++||+|+......-....+...++ .++.++|||||+||+|
T Consensus 173 ~--~~~~~---~~~~~~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~-~~l~~~Gvd~I~TD~P 240 (240)
T cd08566 173 L--LAFEI---TFDDLDLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVW-GELVDAGVDVIQTDRP 240 (240)
T ss_pred e--EEEEE---eccccccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHH-HHHHHcCCCEEecCCC
Confidence 1 12222 2232 367788888887 9999999999621100000000111222 4789999999999998
No 35
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=1.5e-42 Score=320.81 Aligned_cols=231 Identities=20% Similarity=0.230 Sum_probs=172.5
Q ss_pred EEecCCC--CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccccc
Q 016353 46 NLAHRGS--NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG 123 (391)
Q Consensus 46 iiaHRG~--~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g 123 (391)
+|||||+ ++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+.+... ...+
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~----------------~~~~ 64 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL----------------PTSK 64 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC----------------cccc
Confidence 4899997 577999999999999999999999999999999999999999987632210 0002
Q ss_pred ceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHH
Q 016353 124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD 203 (391)
Q Consensus 124 ~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~ 203 (391)
.+.++|++||++++.. .+ ++||||+|+|+++++.+ .+.++||+|..... ....++..+++
T Consensus 65 -~i~~~t~~el~~~~~~----------~~-~~iptL~evl~~~~~~~-~~~l~iEiK~~~~~-------~~~~~~~~l~~ 124 (237)
T cd08583 65 -NTKPLSYEEFKSKKIY----------GK-YTPMDFKDVIDLLKKYP-DVYIVTDTKQDDDN-------DIKKLYEYIVK 124 (237)
T ss_pred -cccCCCHHHHhhcccc----------CC-CCCCCHHHHHHHHHhCC-CeEEEEEecCCCcc-------cHHHHHHHHHH
Confidence 5999999999997653 33 58999999999998543 47899999975320 11245678888
Q ss_pred HHHHcC--CCCcccccccCCCCEEEEccChhHHHHHhhcCCCc-eEEEEecccccccccccccccccchHHHHHHHhhhh
Q 016353 204 TLKKYG--YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280 (391)
Q Consensus 204 ~l~~~~--~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 280 (391)
.+++++ +. +|++|+||++..|+.+++..|.. .+++...... ........ ++.
T Consensus 125 ~~~~~~~~~~----------~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~----~~~ 179 (237)
T cd08583 125 EAKEVDPDLL----------DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS-----------IRLDEIIA----FCY 179 (237)
T ss_pred HHHhhccccc----------ceeEEEecCHHHHHHHHHhCCCcceeeEeccccc-----------cchHHHHH----HHH
Confidence 888863 43 58999999999999999998863 3333321100 00011111 112
Q ss_pred hcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCch
Q 016353 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPG 356 (391)
Q Consensus 281 ~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~ 356 (391)
..+. ..+.+ ++..+++.+++.+|++|+.|++||||++.++ +++.++||||||||++.
T Consensus 180 ~~~~--~~~~~---~~~~~~~~~v~~~~~~Gl~v~vwTVn~~~~~--------------~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 180 ENGI--KAVTI---SKNYVNDKLIEKLNKAGIYVYVYTINDLKDA--------------QEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HcCC--cEEEe---chhhcCHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHcCCCEEEeCCCC
Confidence 2222 22332 3455689999999999999999999999999 68999999999999985
No 36
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.4e-42 Score=318.50 Aligned_cols=228 Identities=25% Similarity=0.323 Sum_probs=172.3
Q ss_pred CEEEecCCCCCC---CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcc
Q 016353 44 PYNLAHRGSNGE---FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN 120 (391)
Q Consensus 44 p~iiaHRG~~~~---~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~ 120 (391)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+++|+|++.
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~------------------ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE------------------ 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC------------------
Confidence 457999999764 79999999999999999 89999999999999999999999999976
Q ss_pred cccceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHH
Q 016353 121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK 200 (391)
Q Consensus 121 ~~g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~ 200 (391)
| .|.++|++||++++++. . .++||||+|+|+.++. .+.++||||.+.. ....+++.
T Consensus 65 --~-~v~~~t~~eL~~l~~~~---------~-~~~iPtL~evl~~~~~---~~~l~iEiK~~~~--------~~~~l~~~ 120 (237)
T cd08585 65 --G-RVEELTAAELRALRLLG---------T-DEHIPTLDEVLELVAG---RVPLLIELKSCGG--------GDGGLERR 120 (237)
T ss_pred --C-ccccCCHHHHhcCCCCC---------C-CCCCCCHHHHHHHhcc---CceEEEEEccCCc--------cchHHHHH
Confidence 4 69999999999999863 2 3599999999999863 3689999997542 13468889
Q ss_pred HHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCce-EEEEecccccccccccccccccchHHHHHHHhhh
Q 016353 201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC 279 (391)
Q Consensus 201 v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 279 (391)
+++++++++ .+++++||++..++++++..|... .+++..... ... .. .........+.. .
T Consensus 121 v~~~l~~~~------------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~-~~--~~~~~~~~~~~~-~ 181 (237)
T cd08585 121 VLAALKDYK------------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EAD-PA--FWNEALLSALFS-N 181 (237)
T ss_pred HHHHHHhcC------------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---ccc-cc--chhHHHHHhhhh-h
Confidence 999999874 379999999999999999988644 455432110 000 00 000000000100 0
Q ss_pred hhcCCCcceeeecCCCCCCCCHHHHHHHHHc-CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 280 ~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~-Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
...++ +.+.+ ++..+++++++.+|++ |+.|++||||+++++ +++.++|+++|+-
T Consensus 182 ~~~~~--~~~~~---~~~~~~~~~v~~~~~~~G~~v~vWTVnd~~~~--------------~~l~~~G~~~i~~ 236 (237)
T cd08585 182 LLTRP--DFIAY---HLDDLPNPFVTLARALLGMPVIVWTVRTEEDI--------------ARLKQYADNIIFE 236 (237)
T ss_pred hccCC--CEEEe---ChhhCcCHHHHHHHHhcCCcEEEEeCCCHHHH--------------HHHHHhCCeeEeC
Confidence 01122 22222 3456789999999999 999999999999999 5799999999874
No 37
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.3e-41 Score=318.77 Aligned_cols=243 Identities=22% Similarity=0.272 Sum_probs=181.8
Q ss_pred CCCCCEEEecCCCCCC----------------------CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCccc
Q 016353 40 QTSRPYNLAHRGSNGE----------------------FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD 97 (391)
Q Consensus 40 ~~~~p~iiaHRG~~~~----------------------~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r 97 (391)
....|++|||||++.. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 4667999999998654 499999999999999999999999999999999999999999
Q ss_pred ccccCCccccccccccccccCcccccceecccCHHHHccccccccccCC-cc--ccCC--CccccCHHHHHHHHHhcCCc
Q 016353 98 TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFR-DQ--QYNG--KFPIITFEEYISIALDAQRV 172 (391)
Q Consensus 98 ~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~EL~~l~~~~~~~~r-~~--~~~~--~~~ipTLeEvL~~~~~~~~~ 172 (391)
+|+++ | .|+++|++||++++++.+|... +. .+.+ ..+||||+|+|+.+++
T Consensus 100 ~T~g~--------------------g-~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~~~~---- 154 (309)
T cd08613 100 RTDGS--------------------G-VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAAFPD---- 154 (309)
T ss_pred ccCCC--------------------C-chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHhcCC----
Confidence 99887 4 6999999999999998765321 11 1111 2379999999999853
Q ss_pred eeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccC--hhHHHHHhhcCCCceEEEEe
Q 016353 173 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFA--PTSLVYISNKTDSPKIFLID 250 (391)
Q Consensus 173 ~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~--~~~l~~l~~~~p~~~~~l~~ 250 (391)
..++||||.+. ....+.+++++++++.. ++.+.||+ +..+++++++.|...++...
T Consensus 155 ~~l~IEiK~~~-----------~~~~~~v~~~i~~~~~~-----------r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~ 212 (309)
T cd08613 155 RRFLINFKSDD-----------AAEGELLAEKLATLPRK-----------RLQVLTVYGGDKPIAALRELTPDLRTLSKA 212 (309)
T ss_pred CcEEEEeCCCC-----------ccHHHHHHHHHHhcCcc-----------ceEEEEEECCHHHHHHHHHHCCCCceeccc
Confidence 57999999853 23568899999998864 56677776 77899999998876553211
Q ss_pred cccccccccccccccccchHHHHHHHhhhhhcCCCc---cee-eec-CCCCCCC-CHHHHHHHHHcCCeEEEE-------
Q 016353 251 DVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWK---DTV-VPV-ANNYSQT-PTDLVARAHALDLQVHPY------- 317 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~---~~l-~~~-~~~~~~~-~~~~v~~~~~~Gl~V~~W------- 317 (391)
.. ..-.+.++.....+..|.. ..+ .|. ...+.+. ++.+++++|+.|..|++|
T Consensus 213 ~~---------------~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~ 277 (309)
T cd08613 213 SM---------------KDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGE 277 (309)
T ss_pred ch---------------HHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCc
Confidence 10 0001111111112222222 122 122 1122333 899999999999999999
Q ss_pred ---eecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhH
Q 016353 318 ---TYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSL 358 (391)
Q Consensus 318 ---Tvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l 358 (391)
|+|++++| .++.+.|+|||+||+|+.+
T Consensus 278 ~~~~~d~~~~~--------------~~l~~~~~~gi~T~r~~~l 307 (309)
T cd08613 278 FSEGFDTPEDL--------------KRLPEGFTGYIWTNKIEAL 307 (309)
T ss_pred ccCCCCCHHHH--------------HHHHhhCCCeEEeCCHhhc
Confidence 89999999 6899999999999999876
No 38
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.3e-40 Score=311.66 Aligned_cols=249 Identities=36% Similarity=0.504 Sum_probs=194.7
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
.|++|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++.
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~-------------------- 64 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL-------------------- 64 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc--------------------
Confidence 589999999999999999999999999999999999999999999999999999999987
Q ss_pred cceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCccc-HHHHH
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKK-FEDKF 201 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~-~~~~v 201 (391)
| .+.++|++|+++++.+.++. ..+ ...+|||+|+++.+ . +.+++++|+|.+.... ... .+..+
T Consensus 65 ~-~~~~~~~~~~~~~~~~~~~~---~~~--~~~ip~l~~~l~~~-~--~~~~l~ieiK~~~~~~-------~~~~~~~~~ 128 (257)
T COG0584 65 G-TVRDLTLAELKRLDAGSFRI---PTF--GEEIPTLEELLEAT-G--RKIGLYIEIKSPGFHP-------QEGKILAAL 128 (257)
T ss_pred c-ccccCChhhhcCcccCcccC---CCC--CCccCCHHHHHHHh-c--ccCCeEEEecCCCccc-------chhhhHHHH
Confidence 3 58899999999999655432 223 35899999999988 3 3588999999876432 112 45667
Q ss_pred HHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCC-CceEEEEecccccccccccccccccchHHHHHHHhhhh
Q 016353 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280 (391)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 280 (391)
++.+.+..... ..++++++||+...++.+++..| .+.++++..... |.....+..+..+..++.
T Consensus 129 ~~~~~~~~~~~-------~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~ 193 (257)
T COG0584 129 LALLKRYGGTA-------ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQ--------YDWMELPRALKEVALYAD 193 (257)
T ss_pred HHHHHHhcccC-------CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccch--------hhhhhccchhhHHHhhhc
Confidence 67777664310 12689999999999999999987 566777654310 222333444555666666
Q ss_pred hcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHH
Q 016353 281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHN 360 (391)
Q Consensus 281 ~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~ 360 (391)
++++....+.+ ..+.++..+|..|+.|++||+|+++.+ +.+.++|||||+||+|+.+.+
T Consensus 194 ~~~~~~~~~~~-------~~~~~v~~~~~~gl~v~~~tv~~~~~~--------------~~~~~~gvd~i~td~p~~~~~ 252 (257)
T COG0584 194 GVGPDWAMLAE-------LLTELVDDAHAAGLKVHVWTVNEEDDI--------------RLLLEAGVDGLITDFPDLAVA 252 (257)
T ss_pred ccCcccceecc-------cccHHHHHHHhCCCeEEEEecCcHHHH--------------HHHHHcCCCEEEcCCHHHHHH
Confidence 66653222110 146899999999999999999999975 578999999999999999988
Q ss_pred HHh
Q 016353 361 YQE 363 (391)
Q Consensus 361 ~~~ 363 (391)
++.
T Consensus 253 ~~~ 255 (257)
T COG0584 253 FLN 255 (257)
T ss_pred hhc
Confidence 765
No 39
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=2.4e-40 Score=307.98 Aligned_cols=248 Identities=33% Similarity=0.442 Sum_probs=162.4
Q ss_pred cCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccceecc
Q 016353 49 HRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVD 128 (391)
Q Consensus 49 HRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~d 128 (391)
|||+++.+||||++||+.|++.|+++||+||++||||++||+||.++.|++++. | .|.+
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~--------------------~-~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD--------------------G-PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE--------------------S-BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC--------------------c-eecc
Confidence 999999999999999999999999999999999999999999999999999987 3 6999
Q ss_pred cCHHHHcccc-cccc--ccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 129 FTLEELKTLR-AKQR--YSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 129 lt~~EL~~l~-~~~~--~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
+||+||++++ ++.+ .+++++.+.+..+||||+|+|+++... .+.+++++|........ ....+.+.++..+
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~~~~i~tl~e~l~~~~~~--~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~ 133 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPGKQKIPTLEEVLELCAKV--KLNLEIKIKSKDEIKDP----EFLKIVKDIVESV 133 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCTCB--EBHHHHHHHHHTT--TSEEEEEEEECTTSHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHhhCcccccCCcccccccceecccccCcHHHHHHhhhhc--cceeEEEEeecccccch----hhccccccccccc
Confidence 9999999999 4333 345555554446899999999996543 36777777753211100 0002344455555
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCC-CceEEEEecccccccccccccccccchHHHHHHHhhhhhcCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 284 (391)
...... .+.+..++++++||++..++.+++..| .+..+++...... +...........+.. .
T Consensus 134 ~~~~~~----~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~----~-- 196 (256)
T PF03009_consen 134 SDILKN----SKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEA-------PADISLFELYKFVKC----P-- 196 (256)
T ss_dssp HHCHHH----HHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHH-------HHH-CCHHHHHHHTT----T--
T ss_pred cccccc----cccccccccccccCcHHHHHHHHhcCCCceEEEEeccCccc-------cccchhhHHHHhhcc----c--
Confidence 544300 000112689999999999999999988 5666665432110 000000001111111 0
Q ss_pred CcceeeecCCCCC--CCCHHHHHHHHHcCCeEEEEeecCc--ccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 285 WKDTVVPVANNYS--QTPTDLVARAHALDLQVHPYTYRNE--HQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 285 ~~~~l~~~~~~~~--~~~~~~v~~~~~~Gl~V~~WTvn~~--~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
.+......+. ..++.+++.+|++|+.|++||+|++ +.+ +++.++||||||||+|++
T Consensus 197 ---~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~~~--------------~~l~~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 197 ---GFLASVWNYADRLGNPRLVQEAHKAGLKVYVWTVNDPDVEDM--------------KRLLDLGVDGIITDFPDT 256 (256)
T ss_dssp ---EEEEEHGGGGHHCEBHHHHHHHHHTT-EEEEBSB-SHSHHHH--------------HHHHHHT-SEEEES-HHH
T ss_pred ---cccccccccccccccHHHHHHHHHCCCEEEEEecCCcHHHHH--------------HHHHhCCCCEEEEcCCCC
Confidence 0110000111 1156799999999999999999999 777 579999999999999974
No 40
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=1.8e-36 Score=270.14 Aligned_cols=188 Identities=34% Similarity=0.507 Sum_probs=150.4
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
+|||||+++.+||||++||+.|++.|+++||+||++||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 58999999999999999999999999999999999999999999999
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
+|||+|+|+.+++ .+.+++|+|.+.. ...+++.+++++
T Consensus 48 ------------------------------i~tL~e~l~~~~~---~~~i~leiK~~~~---------~~~~~~~l~~~i 85 (189)
T cd08556 48 ------------------------------IPTLEEVLELVKG---GVGLNIELKEPTR---------YPGLEAKVAELL 85 (189)
T ss_pred ------------------------------CCCHHHHHHhccc---CcEEEEEECCCCC---------chhHHHHHHHHH
Confidence 4589999999975 4789999998642 246889999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceE-EEEecccccccccccccccccchHHHHHHHhhhhhcCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP 284 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 284 (391)
++++.. ++++++||++..+.++++..|...+ ++...... .. ... ..+...++
T Consensus 86 ~~~~~~----------~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~-----------~~----~~~--~~~~~~~~ 138 (189)
T cd08556 86 REYGLE----------ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPL-----------DP----LLA--ELARALGA 138 (189)
T ss_pred HHcCCc----------CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcc-----------cc----hhh--hHHHhcCC
Confidence 999865 5899999999999999999886555 44432211 00 000 00011111
Q ss_pred CcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 285 WKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..+. .++...++.+++.+|++|+.|++||+|+++++ +++.++|||||+||+
T Consensus 139 --~~v~---~~~~~~~~~~i~~~~~~g~~v~~wtvn~~~~~--------------~~~~~~GVdgI~TD~ 189 (189)
T cd08556 139 --DAVN---PHYKLLTPELVRAAHAAGLKVYVWTVNDPEDA--------------RRLLALGVDGIITDD 189 (189)
T ss_pred --eEEc---cChhhCCHHHHHHHHHcCCEEEEEcCCCHHHH--------------HHHHHCCCCEEecCC
Confidence 1222 23455689999999999999999999999988 578999999999996
No 41
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=100.00 E-value=6.9e-35 Score=258.14 Aligned_cols=174 Identities=29% Similarity=0.373 Sum_probs=139.4
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
++||||+++.+||||++||+.|++.|+++||+||++|+||++||+||.+++|++.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999988752
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhc----CCceeEEEeecCchhccccccccCcccHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (391)
.+++|||+|+|+.+++. +..+.++||+|.+.. ....+.+++
T Consensus 56 ---------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~--------~~~~~~~~~ 100 (179)
T cd08555 56 ---------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP--------EYDEFLAKV 100 (179)
T ss_pred ---------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC--------cchHHHHHH
Confidence 14899999999999863 135899999998642 134678899
Q ss_pred HHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhh
Q 016353 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVG 281 (391)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 281 (391)
++.+++++... ..++++++||. .+... +. .
T Consensus 101 ~~~~~~~~~~~-------~~~~v~i~sf~-----------------~~~~~----------~~----------------~ 130 (179)
T cd08555 101 LKELRVYFDYD-------LRGKVVLSSFN-----------------ALGVD----------YY----------------N 130 (179)
T ss_pred HHHHHHcCCcc-------cCCCEEEEeec-----------------ccCCC----------hh----------------c
Confidence 99999998310 02689999990 00000 00 0
Q ss_pred cCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecC-cccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRN-EHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 282 i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~-~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
+. .+...++++++.+|++|++|++||+|+ ++.+ +++.++|||||+||+
T Consensus 131 ~~-----------~~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~~--------------~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 131 FS-----------SKLIKDTELIASANKLGLLSRIWTVNDNNEII--------------NKFLNLGVDGLITDF 179 (179)
T ss_pred cc-----------chhhcCHHHHHHHHHCCCEEEEEeeCChHHHH--------------HHHHHcCCCEEeCCC
Confidence 00 012347999999999999999999999 8888 579999999999996
No 42
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.96 E-value=1.6e-27 Score=224.82 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccceecccCHHHHccccc
Q 016353 60 TAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA 139 (391)
Q Consensus 60 Tl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~EL~~l~~ 139 (391)
+..+|..|..+|+|+||+|||+||||+|||+||.++.++ ++. + +|.++||+||++++.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~--------------------~-~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK--------------------L-LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc--------------------E-EeecCcHHHHhccCC
Confidence 467999999999999999999999999999999999775 433 3 799999999999998
Q ss_pred cccccCC-c-------cccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccc------cccCcccHHHHHHHHH
Q 016353 140 KQRYSFR-D-------QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV------KWADGKKFEDKFVDTL 205 (391)
Q Consensus 140 ~~~~~~r-~-------~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~------~~~~~~~~~~~v~~~l 205 (391)
+.++... . ..+.+ .++|||+|+|+.+. ..++++||||.|....... ...+-+.+++.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~pTL~evL~~lp---~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~V 150 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLLS-SRVVSLETLLELLP---PSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVV 150 (300)
T ss_pred cccccccccccccchhhhhcC-CcCCCHHHHHHhhc---cCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHH
Confidence 7654320 0 01223 58999999999984 3589999999987642211 0112467999999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCC-CceEEEEeccccccc----------------ccccccccccc
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTE----------------DTNQSYSEITS 268 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p-~~~~~l~~~~~~~~~----------------~~~~~~~~~~~ 268 (391)
-++....+- ..-..++++|+||+|++|..++.+.| +|.++++.+...... .....|.+...
T Consensus 151 f~har~~~~--~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~ 228 (300)
T cd08578 151 FDHARYLRH--TPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRS 228 (300)
T ss_pred HHHhhhhcc--cCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchh
Confidence 887531000 00012789999999999999998877 577777665422100 00112333222
Q ss_pred hHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCcc
Q 016353 269 DAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVD 348 (391)
Q Consensus 269 ~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVd 348 (391)
..+.....+|...+.. .+.. ..+.....|.+|+.+|++|+.+.+|+-+.++.- ....+.|||
T Consensus 229 -~Si~~Av~fA~~~nL~--Giv~-~~~~L~~~P~lV~~ik~~GL~lv~~g~~~~~~~--------------~~~~~~~vn 290 (300)
T cd08578 229 -RSIKEAVRFAKNNNLL--GLIL-PYSLLNIVPQLVESIKSRGLLLIASGEPESLIE--------------VAEAGDGIN 290 (300)
T ss_pred -hhHHHHHHHHHHcCCc--EEEe-cHHHHhhChHHHHHHHHcCCEEEEECCCCcccc--------------ccccccCCc
Confidence 2234444555544331 1211 112244689999999999999999997632221 134567999
Q ss_pred EEEeCCc
Q 016353 349 GLFTDFP 355 (391)
Q Consensus 349 gIiTD~P 355 (391)
|++.|.-
T Consensus 291 G~~~~~~ 297 (300)
T cd08578 291 GVVTEDE 297 (300)
T ss_pred eEEeCCE
Confidence 9999863
No 43
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.94 E-value=2.9e-27 Score=227.89 Aligned_cols=266 Identities=27% Similarity=0.357 Sum_probs=202.6
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccc
Q 016353 43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122 (391)
Q Consensus 43 ~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~ 122 (391)
...+++|||+++.+||||++||++|++.|+|.||+||++|+||++|++||.+..|+++...
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~------------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE------------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------
Confidence 6889999999999999999999999999999999999999999999999999999999873
Q ss_pred cceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHH
Q 016353 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFV 202 (391)
Q Consensus 123 g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~ 202 (391)
.+.++||.|++++.....+++....+. ..++|+|+|....+..++ +.+.-|.|. .+.+.++
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~~~-~~~~~~l~e~v~~~~~~n--~~~l~d~~~--------------~~~~~vl 189 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPIIT-LEKLLTLAEAVASVVGNN--VAMLNDVKL--------------LVVDKVL 189 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccccc-hhhhccHHHHHHHHHcCC--hhhhhhhhh--------------hhHHHHH
Confidence 489999999999998876554222222 258999999999998643 445556551 3678888
Q ss_pred HHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhc
Q 016353 203 DTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI 282 (391)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i 282 (391)
+.+.+.+....+ .++++++||++.++.++++..|...+........ ......+++++..+
T Consensus 190 ~~l~~~~~~~~~------~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~--------------ls~~~dik~~~~~~ 249 (341)
T KOG2258|consen 190 EALKNATSDFSL------YDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTF--------------LSGIEDIKKRAFAV 249 (341)
T ss_pred HHHHHHhcCCCc------cceEEEEecCcHHHHHhccCCceEEecceecchh--------------hccchhhhccccee
Confidence 888888776532 3689999999999999999877622211111100 00122344444444
Q ss_pred CCCcceeeecCCCCC-CCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHH
Q 016353 283 GPWKDTVVPVANNYS-QTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNY 361 (391)
Q Consensus 283 ~~~~~~l~~~~~~~~-~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~ 361 (391)
.++...+.+...... .....++...++.++.|+.+..+.+ ...+.+|+.++..++..+....|++|.+|+++-.+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (341)
T KOG2258|consen 250 VSSKLAIFPVSDSLVLAITKNVVAPLQKLNLVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRL 328 (341)
T ss_pred eechHHHHHHHHHHhhhhhcceeeehhcCCcEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHh
Confidence 444444433311222 2244788999999999999999999 77789999999999998999999999999999999999
Q ss_pred HhccCC
Q 016353 362 QELTSP 367 (391)
Q Consensus 362 ~~~~~~ 367 (391)
.+..+.
T Consensus 329 ~~~~~~ 334 (341)
T KOG2258|consen 329 TDNPCE 334 (341)
T ss_pred hccccc
Confidence 885553
No 44
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.91 E-value=3.8e-23 Score=180.84 Aligned_cols=187 Identities=20% Similarity=0.235 Sum_probs=128.9
Q ss_pred EEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccce
Q 016353 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125 (391)
Q Consensus 46 iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~ 125 (391)
|||||| ||++||++|++. ++||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999999 9999999999 9999999999883
Q ss_pred ecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHH
Q 016353 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL 205 (391)
Q Consensus 126 v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l 205 (391)
++|||+|+|+.+++ ..++||||.+ .+++++.+++
T Consensus 42 -----------------------------~~PtLeEvL~~~~~----~~l~inIK~~-------------~l~~~l~~li 75 (192)
T cd08584 42 -----------------------------NGELLEDWLKEYNH----GTLILNIKAE-------------GLELRLKKLL 75 (192)
T ss_pred -----------------------------CCCCHHHHHHhccc----ccEEEEECch-------------hHHHHHHHHH
Confidence 36899999999853 4588999963 4789999999
Q ss_pred HHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCC
Q 016353 206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW 285 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 285 (391)
+++++. ++++|+||++..+++++.-.+...+-..+.. . .+ ..+.-+...-+.|
T Consensus 76 ~~~~~~----------~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E------------~--~~---~~~~~~~~~~~VW 128 (192)
T cd08584 76 AEYGIT----------NYFFLDMSVPDIIKYLENGEKRTATRVSEYE------------P--IP---TALSLYEKADWVW 128 (192)
T ss_pred HhcCCc----------ceEEEEcCCHHHHHHHhcCCCeeEEeecccc------------c--ch---HHHHhhccccEEE
Confidence 999986 5899999999999999875431111111111 0 01 1111111222334
Q ss_pred cceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHH-HHHH---cCccEEEeCCchh
Q 016353 286 KDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDY-WINK---IGVDGLFTDFPGS 357 (391)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~-~l~~---~GVdgIiTD~P~~ 357 (391)
.+.+ ....++.+.++...++|.++..=. |+-. .. |-.++++. +.++ .--++||||+|..
T Consensus 129 ~D~f-----~~~~~~~~~~~~~~~~~~~~c~VS---pELh-~~----~~~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 129 IDSF-----TSLWLDNDLILKLLKAGKKICLVS---PELH-GR----DHLAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred Eecc-----cccCCCHHHHHHHHHCCcEEEEEC---HHHc-CC----ChHHHHHHHHhhhhccccCeeEeccCccc
Confidence 4433 234568999999999999987643 3221 11 11222221 1112 2257999999975
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.59 E-value=8.5e-15 Score=133.67 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=119.8
Q ss_pred HHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccceecccCHHHHccccccccc
Q 016353 64 YMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRY 143 (391)
Q Consensus 64 f~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~EL~~l~~~~~~ 143 (391)
|..|++.||++||.||++| ||+++|.||..+.+. +. .+.++++++|.++....
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~-~~-----------------------tl~~Lyl~pL~~~l~~~-- 67 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP-AR-----------------------TLESLYLDPLLEILDQN-- 67 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc-cC-----------------------CHHHHhHHHHHHHHHHc--
Confidence 7789999999999999998 999999999988776 21 38999999999865432
Q ss_pred cCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCC
Q 016353 144 SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQP 223 (391)
Q Consensus 144 ~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~ 223 (391)
++ ... .+....+.++||||+... +.-.++..+++.+++.++...+..-.+..=.
T Consensus 68 -------n~--~~~---------~~~~~~l~LlIDiKt~g~--------~t~~~l~~~L~~~~~~~~~~~~~~~~~~pvt 121 (228)
T cd08577 68 -------NG--QAY---------NDPEQPLQLLIDIKTDGE--------STYPALEEVLKPYIDIGYLSYYDKLVPGPVT 121 (228)
T ss_pred -------CC--CCC---------CCCCCceEEEEEECCCCh--------HHHHHHHHHHHHHHhcCceeecCcEEecCeE
Confidence 11 111 233456899999998642 1225677778888887765322100111112
Q ss_pred EEEEccChhHHHHHhhcCCCceEEEEecccc--cccccccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCH
Q 016353 224 IFIQSFAPTSLVYISNKTDSPKIFLIDDVDI--LTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPT 301 (391)
Q Consensus 224 vii~Sf~~~~l~~l~~~~p~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~ 301 (391)
|+++.-.|..+ +.. ..++..++++.-. ........+..+.+..+-.. ++.+.....+. .-...-.
T Consensus 122 vV~tGn~p~~~--~~~--~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~-------~~~~~~g~~~~--~q~~~l~ 188 (228)
T cd08577 122 VVITGNRPKEE--VKS--QYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKF-------SKWNGKGDTPE--DEKEKLK 188 (228)
T ss_pred EEEeCCCChhh--hcc--ccCCeEEEeCChhhccccccccccceEEEccHHHh-------cCCCCCCCCCH--HHHHHHH
Confidence 33443334322 111 1233333333210 00000001111111111111 11000000000 0001125
Q ss_pred HHHHHHHHcCCeEEEEeecC-cccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 302 DLVARAHALDLQVHPYTYRN-EHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 302 ~~v~~~~~~Gl~V~~WTvn~-~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
++++.+|++|+++.+||+++ .+.+ +.+.++|||+|+||.
T Consensus 189 ~~v~~a~~~Gl~vr~Wtv~~~~~~~--------------~~l~~~GVd~I~TDd 228 (228)
T cd08577 189 SIIDKAHARGKKVRFWGTPDRPNVW--------------KTLMELGVDLLNTDD 228 (228)
T ss_pred HHHHHHHHCCCEEEEEccCChHHHH--------------HHHHHhCCCEEecCC
Confidence 67899999999999999975 5545 578999999999995
No 46
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.52 E-value=3e-13 Score=124.47 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHcCC-----eEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhccC
Q 016353 298 QTPTDLVARAHALDL-----QVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQELTS 366 (391)
Q Consensus 298 ~~~~~~v~~~~~~Gl-----~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~~~ 366 (391)
..+.++++.+|++|. +|++||||+++.+ +++.++||||||||+|+.+.++++...
T Consensus 191 ~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~~~--------------~~ll~~GVDGIITD~P~~i~~~l~~~~ 250 (265)
T cd08576 191 RTCARLREAIKKRDTPGYLGKVYGWTSDKGSSV--------------RKLLRLGVDGIITNYPKRIIDVLKESE 250 (265)
T ss_pred cccHHHHHHHHHcCCCCcCCeEEEEeCCCHHHH--------------HHHHhcCCCEEEECCHHHHHHHHHhcc
Confidence 457999999999999 9999999999888 578999999999999999998876543
No 47
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.74 E-value=7.3e-08 Score=86.99 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=40.0
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 54 ~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
...+|||++||+.|++.||++||+||+-++||+|||+||.++
T Consensus 25 Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tl 66 (229)
T cd08592 25 QLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTL 66 (229)
T ss_pred ccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 468899999999999999999999999999999999999877
No 48
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.65 E-value=1.4e-08 Score=61.24 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=23.3
Q ss_pred eEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCch
Q 016353 313 QVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPG 356 (391)
Q Consensus 313 ~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~ 356 (391)
+|+.||+|+.+.+ +.++++|||||+||+|+
T Consensus 1 kV~~WT~d~~~~~--------------~~~l~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPASW--------------RELLDLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHHHH--------------HHHHHHT-SEEEES-HH
T ss_pred CeEEecCCCHHHH--------------HHHHHcCCCEeeCCCCC
Confidence 5899999999888 57999999999999985
No 49
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.63 E-value=2.2e-07 Score=83.61 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=39.9
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 54 ~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
...+|||+++|..|+..||++||+||+-++||+|||+||.++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred ccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 457899999999999999999999999999999999999887
No 50
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=98.16 E-value=1.2e-05 Score=74.25 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|+++|..|+..||++||+||+-++||+|||+|+.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 34567899999999999999999999999999999999876
No 51
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.04 E-value=5.7e-07 Score=89.25 Aligned_cols=65 Identities=28% Similarity=0.300 Sum_probs=54.3
Q ss_pred CCCCCCCCCEEEecCCCCC-------CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccc
Q 016353 36 KQPLQTSRPYNLAHRGSNG-------EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100 (391)
Q Consensus 36 ~~~~~~~~p~iiaHRG~~~-------~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~ 100 (391)
+.+-.....+.++|||.+. ..+|||+..+..|.+.|+|++|+||++|+|.++||+||..+...-.
T Consensus 317 ~~w~~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~ 388 (417)
T KOG2421|consen 317 NYWKKNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSVI 388 (417)
T ss_pred hhhcccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEeec
Confidence 3333445678899999754 3679999999999999999999999999999999999988765433
No 52
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.96 E-value=5.9e-05 Score=63.39 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 53 NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 53 ~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
...+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 3467899999999999999999999999999999999999865
No 53
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=97.50 E-value=0.00084 Score=60.70 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+.|.++|..|+..||++||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45578899999999999999999999999999999998766
No 54
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.47 E-value=0.00085 Score=61.62 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=37.3
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+||+=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 26 LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45567899999999999999999999999999999998876
No 55
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=97.39 E-value=0.0012 Score=60.66 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|..+|..|+..||++||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34568899999999999999999999999999999998876
No 56
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.39 E-value=0.0013 Score=60.40 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
.-+-|.++|..|+..||++||+|++=-.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 4467899999999999999999999999999999998766
No 57
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=97.37 E-value=0.0015 Score=59.31 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+.+||++||+|++=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 45668899999999999999999999999999999998765
No 58
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=97.36 E-value=0.0014 Score=60.48 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
.-+-|.++|..|+..||++||+|++=-.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 4567999999999999999999999989999999998776
No 59
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=97.35 E-value=0.0014 Score=60.49 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+||+=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 44578899999999999999999999989999999998776
No 60
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=97.31 E-value=0.0018 Score=59.75 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=36.9
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34567899999999999999999999999999999998766
No 61
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=97.29 E-value=0.0018 Score=59.99 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 35567899999999999999999999999999999998765
No 62
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=97.29 E-value=0.0018 Score=59.79 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|..+|..|+..||++||+||+=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 34467899999999999999999999999999999998766
No 63
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.27 E-value=0.002 Score=59.43 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
.-+-|..+|..|+..||++||+|++=-.||+|||+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 27 RSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred ecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 4567889999999999999999999989999999998766
No 64
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=97.27 E-value=0.002 Score=58.56 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+||+=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34568899999999999999999999888899999998766
No 65
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=97.27 E-value=0.0019 Score=59.60 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcC--CCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+||+=-. ||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 34567899999999999999999999755 789999998776
No 66
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=97.15 E-value=0.0042 Score=56.47 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
.-+-|..+|..|+..||++||+||+=..||+|+|+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 27 SSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred CCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 4467889999999999999999999989999999998764
No 67
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=97.14 E-value=0.0028 Score=58.50 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcC--CCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 95 (391)
.-+-|.++|..|+..||++||+|++=-. ||+|||+|..++
T Consensus 27 ~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 27 AGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 3467899999999999999999999766 689999999876
No 68
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=97.04 E-value=0.004 Score=57.59 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcC--CCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+|++=-. ||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 34567899999999999999999999653 789999999876
No 69
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=97.02 E-value=0.088 Score=48.49 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeEEcC------CCeEEEEcCCCcccccccCCccccccccccccccCcccccceecccCHH
Q 016353 59 ETAAAYMRAIEEGADFIETDILASK------DGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLE 132 (391)
Q Consensus 59 NTl~Af~~A~~~Gad~vE~DV~lTk------Dg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~ 132 (391)
|+.+.++.|+...+.+||.||.+-+ +++||..|.+...
T Consensus 12 Nsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~~------------------------------------ 55 (244)
T PF10223_consen 12 NSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPATD------------------------------------ 55 (244)
T ss_pred CCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCCC------------------------------------
Confidence 8999999999999999999999984 7889988875431
Q ss_pred HHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCC
Q 016353 133 ELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKG 212 (391)
Q Consensus 133 EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 212 (391)
.-.||+|.|+.+... .-++.+|+|.. +.+...+++|.+..-.
T Consensus 56 ----------------------SdltLee~L~~v~~~--~kGIKLDFKs~-------------eav~pSl~~L~~~~~~- 97 (244)
T PF10223_consen 56 ----------------------SDLTLEEWLDEVLSS--RKGIKLDFKSI-------------EAVEPSLDLLAKLSDK- 97 (244)
T ss_pred ----------------------CcCcHHHHHHHHhcc--CcEEEEeccCH-------------HHHHHHHHHHHHHhhc-
Confidence 123899999988844 35788899985 3456666666654221
Q ss_pred cccccccCCCCEEEEccCh---------hHHHHHhhcCCCceEEEEeccccc--ccccccccccccchHHHHHHHhhhhh
Q 016353 213 AYMSKEWLKQPIFIQSFAP---------TSLVYISNKTDSPKIFLIDDVDIL--TEDTNQSYSEITSDAYLNYIKEYCVG 281 (391)
Q Consensus 213 ~~~~~~~~~~~vii~Sf~~---------~~l~~l~~~~p~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~ 281 (391)
...+.|..-.|+-..+.. ..|..+++..|..++ .-+++.. ..-....|.. .-++.+...+.+
T Consensus 98 -l~~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tL--S~GWTT~~~~~~~~~~Yt~----~~v~~M~~l~~~ 170 (244)
T PF10223_consen 98 -LTRPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATL--SLGWTTRWGPEVPNGGYTW----EMVEEMLELCKG 170 (244)
T ss_pred -cCCCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEE--ecCcccccCccCCCccccH----HHHHHHHHHHHh
Confidence 112235444444444444 235666666554333 2222111 1111223433 224444444444
Q ss_pred cC-CCcceeeecCCCCCCCC-HHHHHHHHH-cCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhH
Q 016353 282 IG-PWKDTVVPVANNYSQTP-TDLVARAHA-LDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSL 358 (391)
Q Consensus 282 i~-~~~~~l~~~~~~~~~~~-~~~v~~~~~-~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l 358 (391)
+. .+...-.|+.......+ +.+...+.+ ....+-+|+-.+... ..+.........|.+-|..|-|+.+
T Consensus 171 ~~~l~Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v---------~v~~Ll~lr~~~~~~rVyyDlpe~~ 241 (244)
T PF10223_consen 171 INQLPQPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPV---------SVEDLLYLRRNFDKSRVYYDLPEPL 241 (244)
T ss_pred hccCCCceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCCc---------cHHHHHHHHHhCCCcEEEEeCChhh
Confidence 11 11111122210111112 233333333 357888887533321 1133333344689999999998765
Q ss_pred H
Q 016353 359 H 359 (391)
Q Consensus 359 ~ 359 (391)
.
T Consensus 242 ~ 242 (244)
T PF10223_consen 242 R 242 (244)
T ss_pred h
Confidence 4
No 70
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=96.99 E-value=0.0053 Score=56.66 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEcCC--CeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILASKD--GVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkD--g~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+|++=-.| |+|||+|..++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 345688999999999999999999998774 99999998776
No 71
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.95 E-value=0.0055 Score=56.81 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEc--CCCeEEEEcCCCc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILAS--KDGVLICHHDVFL 95 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lT--kDg~~Vv~HD~~l 95 (391)
..-+-|.++|..|+..||++||+|++=- .|++|||.|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 3456789999999999999999999965 3589999999876
No 72
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.93 E-value=0.038 Score=57.25 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=40.9
Q ss_pred EecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 47 iaHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
-+|.-. ....-+-|.++|..|+..||++||+|++=-.+|+|||.|..++
T Consensus 128 sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 128 TGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred cccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCC
Confidence 377742 2345567899999999999999999999878899999999877
No 73
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.58 E-value=0.0098 Score=62.03 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=42.8
Q ss_pred ecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcc
Q 016353 48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (391)
Q Consensus 48 aHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 96 (391)
+|.-. -....|.|++||..|+.+||++||+|.+=-.||.+|++|..++.
T Consensus 323 SHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~T 374 (1267)
T KOG1264|consen 323 SHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTRT 374 (1267)
T ss_pred cCcceecccccccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEecccee
Confidence 56543 23478999999999999999999999999999999999998863
No 74
>PLN02228 Phosphoinositide phospholipase C
Probab=95.49 E-value=0.073 Score=54.91 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=38.8
Q ss_pred ecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCe-EEEEcCCCc
Q 016353 48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFL 95 (391)
Q Consensus 48 aHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l 95 (391)
+|.-. ....-+-|.++|..|+..||++||+|++=-.||. |||+|..++
T Consensus 120 SHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 120 GHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred ccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcc
Confidence 67643 2345678999999999999999999999655665 899998776
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.20 E-value=0.076 Score=55.53 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=41.6
Q ss_pred ecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 48 aHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
+|--. ....-+-|+.+|-.|++.||++||+|++=-.+|.|||+|-.++
T Consensus 303 SHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 303 SHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred cccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccc
Confidence 66642 2235578999999999999999999999999999999999988
No 76
>PLN02952 phosphoinositide phospholipase C
Probab=95.20 E-value=0.12 Score=53.81 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=39.4
Q ss_pred EecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCC-eEEEEcCCCc
Q 016353 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDG-VLICHHDVFL 95 (391)
Q Consensus 47 iaHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg-~~Vv~HD~~l 95 (391)
-+|.-. ....-+-|..+|..|+..||++||+|++=-.|| .|||+|..++
T Consensus 136 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 136 TGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred ccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcc
Confidence 377742 344667889999999999999999999976665 4899998776
No 77
>PLN02222 phosphoinositide phospholipase C 2
Probab=94.47 E-value=0.2 Score=51.92 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=38.0
Q ss_pred EecCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCe-EEEEcCCCc
Q 016353 47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFL 95 (391)
Q Consensus 47 iaHRG~---~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l 95 (391)
-+|.-. ....-+-|.++|..|+..||++||+|++=-.||. ++|+|..++
T Consensus 116 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tl 168 (581)
T PLN02222 116 TGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTL 168 (581)
T ss_pred cccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcc
Confidence 377742 2345678899999999999999999999666665 578997766
No 78
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=93.99 E-value=3.9 Score=39.35 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHcCCCEEEeeeEEcCCC
Q 016353 57 PEETAAAYMRAIEEGADFIETDILASKDG 85 (391)
Q Consensus 57 pENTl~Af~~A~~~Gad~vE~DV~lTkDg 85 (391)
.+|+-..+..+++.|++.+|+||+-..+|
T Consensus 43 ~~~s~~~i~~QLd~GvR~LELDv~~d~~g 71 (324)
T cd08589 43 LDYSHPPLADQLDSGVRQLELDVWADPEG 71 (324)
T ss_pred ccCCCccHHHHHhhCcceEEEEEeecCCc
Confidence 35788899999999999999999986653
No 79
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=92.10 E-value=0.097 Score=30.07 Aligned_cols=21 Identities=33% Similarity=0.736 Sum_probs=18.6
Q ss_pred CcchhhHHHHHHHHHhhcCCc
Q 016353 2 GISSTCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~ 22 (391)
.|...++++++..+.|+||++
T Consensus 5 ~mmKkil~~l~a~~~LagCss 25 (25)
T PF08139_consen 5 SMMKKILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 577889999999999999974
No 80
>PLN02223 phosphoinositide phospholipase C
Probab=91.07 E-value=0.22 Score=50.87 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=37.7
Q ss_pred ecCCC---CCCCch-hHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcc
Q 016353 48 AHRGS---NGEFPE-ETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96 (391)
Q Consensus 48 aHRG~---~~~~pE-NTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 96 (391)
+|.-. ....-+ -|..+|..|+..||++||+|++=-.++.++|.|-.++.
T Consensus 120 SHNTYL~g~Ql~~~~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt 172 (537)
T PLN02223 120 SLKSYFTGNNVFGKLYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE 172 (537)
T ss_pred cccccccCCcccCCcccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence 66643 112333 88999999999999999999995455667899998864
No 81
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=90.26 E-value=0.44 Score=44.98 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
+-.....++..++..|++++|+||+-.+|+.++++|..++
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 3578899999999999999999999999999999998654
No 82
>PLN02591 tryptophan synthase
Probab=89.37 E-value=6.2 Score=36.71 Aligned_cols=28 Identities=32% Similarity=0.141 Sum_probs=23.5
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEEc
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILAS 82 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~lT 82 (391)
--+|-|+...+.-.+.|+|.+|+-+=.+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfS 40 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYS 40 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3568899999999999999999987654
No 83
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=87.81 E-value=7.1 Score=36.34 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 299 TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
+-..++..+|+.|+.|.+..|.+.++. ..+.++|||.+.-.+
T Consensus 194 iv~~iv~la~~l~~~vvaEGVEt~~ql--------------~~L~~~G~~~~QGyl 235 (256)
T COG2200 194 IVRAIVALAHKLGLTVVAEGVETEEQL--------------DLLRELGCDYLQGYL 235 (256)
T ss_pred HHHHHHHHHHHCCCEEEEeecCCHHHH--------------HHHHHcCCCeEeecc
Confidence 357899999999999999999999998 689999999888773
No 84
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=87.21 E-value=1.1 Score=37.87 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=32.1
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
+..+.-.++...++.|++++|+||+...++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 3567788999999999999999999999999999996654
No 85
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=86.89 E-value=1.4 Score=38.52 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=38.0
Q ss_pred CHHHHHHHHHcCCeEEEEe-----ecCcccccccccCCCchHHHHHHHHHcC-ccEEEeCCchhHHHHHhc
Q 016353 300 PTDLVARAHALDLQVHPYT-----YRNEHQFLHFNFLQDPYREYDYWINKIG-VDGLFTDFPGSLHNYQEL 364 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WT-----vn~~~~~~~~~~~~~~~~~~~~~l~~~G-VdgIiTD~P~~l~~~~~~ 364 (391)
-+++++.+|++|..|++.. +...+.. -+++.+.+ +|||||=++..++..+++
T Consensus 33 l~~~v~~~~~~gK~vfVHiDli~Gl~~D~~~-------------i~~L~~~~~~dGIISTk~~~i~~Ak~~ 90 (175)
T PF04309_consen 33 LKDIVKRLKAAGKKVFVHIDLIEGLSRDEAG-------------IEYLKEYGKPDGIISTKSNLIKRAKKL 90 (175)
T ss_dssp HHHHHHHHHHTT-EEEEECCGEETB-SSHHH-------------HHHHHHTT--SEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEEehhcCCCCCCHHH-------------HHHHHHcCCCcEEEeCCHHHHHHHHHc
Confidence 4899999999999999984 2222222 14677777 999999999999888764
No 86
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=84.51 E-value=1.5 Score=38.34 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=86.1
Q ss_pred cccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHH
Q 016353 155 PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (391)
Q Consensus 155 ~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l 234 (391)
.|-+|.++.+.+++.++.+.+++|+=..- .--+.-++.|.++.-.. - +.|-.+..+
T Consensus 29 ~I~~l~~~v~~~~~~gK~vfVHiDli~Gl------------~~D~~~i~~L~~~~~~d-----------G-IISTk~~~i 84 (175)
T PF04309_consen 29 DIGNLKDIVKRLKAAGKKVFVHIDLIEGL------------SRDEAGIEYLKEYGKPD-----------G-IISTKSNLI 84 (175)
T ss_dssp ECCCHHHHHHHHHHTT-EEEEECCGEETB-------------SSHHHHHHHHHTT--S-----------E-EEESSHHHH
T ss_pred cHHHHHHHHHHHHHcCCEEEEEehhcCCC------------CCCHHHHHHHHHcCCCc-----------E-EEeCCHHHH
Confidence 79999999999999999999999876432 11156678888876221 2 556777788
Q ss_pred HHHhhcC--CCceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHc-C
Q 016353 235 VYISNKT--DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHAL-D 311 (391)
Q Consensus 235 ~~l~~~~--p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~-G 311 (391)
++.++.. ...++|+++...+ +..++. .....|+.-.+.| + +-+.+++.+++. +
T Consensus 85 ~~Ak~~gl~tIqRiFliDS~al--------------~~~~~~----i~~~~PD~vEilP---g---~~p~vi~~i~~~~~ 140 (175)
T PF04309_consen 85 KRAKKLGLLTIQRIFLIDSSAL--------------ETGIKQ----IEQSKPDAVEILP---G---VMPKVIKKIREETN 140 (175)
T ss_dssp HHHHHTT-EEEEEEE-SSHHHH--------------HHHHHH----HHHHT-SEEEEES---C---CHHHHHCCCCCCCS
T ss_pred HHHHHcCCEEEEEeeeecHHHH--------------HHHHHH----HhhcCCCEEEEch---H---HHHHHHHHHHHhcC
Confidence 8888763 2345566654311 112222 2334555444554 2 246777776554 4
Q ss_pred CeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 312 LQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 312 l~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
.++.+-+ +.+++++ ..+.+.|+++|.|-.++.
T Consensus 141 ~PiIAGGLI~~~e~v--------------~~al~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 141 IPIIAGGLIRTKEDV--------------EEALKAGADAVSTSNKEL 173 (175)
T ss_dssp S-EEEESS--SHHHH--------------HHHCCTTCEEEEE--HHH
T ss_pred CCEEeecccCCHHHH--------------HHHHHcCCEEEEcCChHh
Confidence 7787776 6777776 468899999999987764
No 87
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=80.01 E-value=13 Score=34.82 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 58 EETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 58 ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
-|-..++...++.|++++|+||+.. ++.+.++|-...
T Consensus 41 ~nQ~~sI~~QL~~GvR~LdLdv~~~-~~~l~v~Hg~~~ 77 (267)
T cd08590 41 PNQELSITDQLDLGARFLELDVHWT-TGDLRLCHGGDH 77 (267)
T ss_pred cccCcCHHHHHhhCCcEEEEeeeeC-CCCEEEEccCcc
Confidence 4666788999999999999999985 467778887544
No 88
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=79.46 E-value=1.4 Score=44.07 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=42.1
Q ss_pred EEEecCCCCCC-----------CchhHHHH-HHHHHHcCCCEEEeeeEEc-CCCe-EEEEcCC
Q 016353 45 YNLAHRGSNGE-----------FPEETAAA-YMRAIEEGADFIETDILAS-KDGV-LICHHDV 93 (391)
Q Consensus 45 ~iiaHRG~~~~-----------~pENTl~A-f~~A~~~Gad~vE~DV~lT-kDg~-~Vv~HD~ 93 (391)
-+++|||.... .-+|+..+ |..|...+...+|+|++.+ +|++ +|+.|++
T Consensus 43 ~~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~ 105 (417)
T KOG2421|consen 43 PVIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRN 105 (417)
T ss_pred eeecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEeccc
Confidence 37899997432 23899999 9999999999999999999 9999 8888884
No 89
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.67 E-value=3.8 Score=44.01 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeEE--cCCCeEEEEcCCCcc
Q 016353 59 ETAAAYMRAIEEGADFIETDILA--SKDGVLICHHDVFLD 96 (391)
Q Consensus 59 NTl~Af~~A~~~Gad~vE~DV~l--TkDg~~Vv~HD~~l~ 96 (391)
.|.+-|+.++-.||++||+|+|= ++|++||+-|..++-
T Consensus 342 sSvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm~ 381 (1189)
T KOG1265|consen 342 SSVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTMT 381 (1189)
T ss_pred chHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccchh
Confidence 48999999999999999999995 568999999998874
No 90
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=77.04 E-value=4.7 Score=37.95 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=37.8
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
-++++++++++|+.|..|.-....-- ..++.... ++...++.++||.||=+|+.+.
T Consensus 75 l~elv~Ya~~KgVgi~lw~~~~~~~~-~~~~~~~~-~~~f~~~~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 75 LPELVDYAKEKGVGIWLWYHSETGGN-VANLEKQL-DEAFKLYAKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEEECCHTTB-HHHHHCCH-HHHHHHHHHCTEEEEEEE--SS
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcchh-hHhHHHHH-HHHHHHHHHcCCCEEeeCcCCC
Confidence 38999999999999999987655110 01112233 4455678999999999998776
No 91
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=74.44 E-value=9.5 Score=37.28 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhcc
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQELT 365 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~~ 365 (391)
.+.++.+|++|.++++= +|..-.-. .-....++...+.++|||+||-..|..+.-..+..
T Consensus 52 ~e~i~~ah~~gkk~~V~-~N~~~~~~----~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~ 111 (347)
T COG0826 52 AEAVELAHSAGKKVYVA-VNTLLHND----ELETLERYLDRLVELGVDAVIVADPGLIMLARERG 111 (347)
T ss_pred HHHHHHHHHcCCeEEEE-eccccccc----hhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhC
Confidence 67889999999988763 33321110 00112466678999999999999999887666544
No 92
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.65 E-value=75 Score=29.24 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHcCCCEEEeee
Q 016353 56 FPEETAAAYMRAIEEGADFIETDI 79 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV 79 (391)
.+|++....+...+.|+|.+|+|+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~i 35 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGI 35 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Confidence 346888888888889999999996
No 93
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=71.90 E-value=5.9 Score=22.58 Aligned_cols=20 Identities=15% Similarity=0.374 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhcCCcCCCC
Q 016353 7 CFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~ 26 (391)
+++++..+++++||+...+.
T Consensus 2 ~~~~~~~~~~LsgCG~KGpL 21 (24)
T PF13627_consen 2 LLLLLALALALSGCGQKGPL 21 (24)
T ss_pred hHHHHHHHHHHHhcccCCCC
Confidence 45666778888999997753
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=68.70 E-value=92 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhccCCCCCCchHHHHHhh
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQELTSPVSKDNRASKLLHK 380 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
...++.+|+.|+.+++=.+|+.+... -.+++.++|+|.++--+....+.. .. ++....|++
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~~~~-----------~~~~l~~~gvd~~~~H~g~D~q~~--G~------~~~~~~l~~ 156 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWDPEQ-----------RAKWLKELGVDQVILHRGRDAQAA--GK------SWGEDDLEK 156 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCCHHH-----------HHHHHHHhCCCEEEEEecccHhhc--CC------CccHHHHHH
Confidence 67888999999999998887765331 114566699999998877666542 22 222345566
Q ss_pred hhhhhc
Q 016353 381 IAVLIS 386 (391)
Q Consensus 381 ~~~~~~ 386 (391)
|-.+.+
T Consensus 157 ik~~~~ 162 (217)
T COG0269 157 IKKLSD 162 (217)
T ss_pred HHHhhc
Confidence 655554
No 95
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=67.43 E-value=27 Score=32.91 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=85.3
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhH
Q 016353 154 FPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (391)
Q Consensus 154 ~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~ 233 (391)
.++-.|+|..+.+-..+.-+++.|=..++ =+.+.|+++|.++.-.- ..|. .+=+||-+...
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgTRPD-------------Clpd~VldlL~e~~~r~----~vWv--ELGLQT~h~~T 157 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGTRPD-------------CLPDDVLDLLAEYNKRY----EVWV--ELGLQTAHDKT 157 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecCCCC-------------CCcHHHHHHHHHHhhhe----EEEE--EeccchhhHHH
Confidence 47888999999988777677776644432 24466777777664210 0121 12244555555
Q ss_pred HHHHhhcCCCceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCe
Q 016353 234 LVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQ 313 (391)
Q Consensus 234 l~~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~ 313 (391)
++.+.+-.. ...-.+.+.+++++|++
T Consensus 158 lk~iNRgHd------------------------------------------------------~~~y~dav~r~rkrgIk 183 (312)
T COG1242 158 LKRINRGHD------------------------------------------------------FACYVDAVKRLRKRGIK 183 (312)
T ss_pred HHHHhcccc------------------------------------------------------hHHHHHHHHHHHHcCCe
Confidence 554433110 00124677899999999
Q ss_pred EEEEeecCcccccccccCCCchHHHHHHHHHcCccEEE-------eCCchhHHHH-HhccCCCCCCchHHHHHhhh
Q 016353 314 VHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLF-------TDFPGSLHNY-QELTSPVSKDNRASKLLHKI 381 (391)
Q Consensus 314 V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIi-------TD~P~~l~~~-~~~~~~~~~~~~~~~~~~~~ 381 (391)
|.+..++.-..-. .+.--+.-+.+..+|||||= ...| ....| ......+|.+.|.+.+-+.+
T Consensus 184 vc~HiI~GLPgE~-----~~~mleTak~v~~~~v~GIKlH~LhvvkgT~-m~k~Y~~G~l~~ls~eeYv~~~~d~l 253 (312)
T COG1242 184 VCTHLINGLPGET-----RDEMLETAKIVAELGVDGIKLHPLHVVKGTP-MEKMYEKGRLKFLSLEEYVELVCDQL 253 (312)
T ss_pred EEEEEeeCCCCCC-----HHHHHHHHHHHHhcCCceEEEEEEEEecCCh-HHHHHHcCCceeccHHHHHHHHHHHH
Confidence 9999986532110 01112333467789999973 3333 33444 34456677777777766654
No 96
>PRK11372 lysozyme inhibitor; Provisional
Probab=66.40 E-value=7.5 Score=31.21 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhhcCCcCCC
Q 016353 5 STCFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~ 25 (391)
+..++.++..++|+||++...
T Consensus 3 mk~ll~~~~~~lL~gCs~~~~ 23 (109)
T PRK11372 3 MKKLLIICLPVLLTGCSAYNQ 23 (109)
T ss_pred hHHHHHHHHHHHHHHhcCCcc
Confidence 344556666777999998543
No 97
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=65.79 E-value=24 Score=34.87 Aligned_cols=91 Identities=12% Similarity=0.221 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCC--ceEEEEecccccccccccccccccchHHH
Q 016353 195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS--PKIFLIDDVDILTEDTNQSYSEITSDAYL 272 (391)
Q Consensus 195 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (391)
..+++.+-++.+..++ ++++.|+|+++++...+.... |.++-...
T Consensus 84 e~fa~~vk~V~~a~~~------------PLIL~~~D~evl~aale~~~~~kpLL~aAt~--------------------- 130 (386)
T PF03599_consen 84 EEFAKAVKKVAEAVDV------------PLILCGCDPEVLKAALEACAGKKPLLYAATE--------------------- 130 (386)
T ss_dssp HHHHHHHHHHHHC-SS------------EEEEESSHHHHHHHHHHHTTTS--EEEEEBT---------------------
T ss_pred HHHHHHHHHHHHhcCC------------CEEEEeCCHHHHHHHHHHhCcCCcEEeEcCH---------------------
Confidence 4565555555554443 599999999999988776443 33321111
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 273 NYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 273 ~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
.+ -.++.+.++++|..|.+++..|-+.+ ++....+.++|++-|+-
T Consensus 131 ---------------------eN----yk~m~~lA~~y~~pl~v~sp~Dln~l----------k~Ln~~l~~~Gv~dIVl 175 (386)
T PF03599_consen 131 ---------------------EN----YKAMAALAKEYGHPLIVSSPIDLNLL----------KQLNIKLTELGVKDIVL 175 (386)
T ss_dssp ---------------------TT----HHHHHHHHHHCT-EEEEE-SSCHHHH----------HHHHHHHHTTT-GGEEE
T ss_pred ---------------------HH----HHHHHHHHHHcCCeEEEEecccHHHH----------HHHHHHHHhcCcccEEe
Confidence 01 25677888889999999987777766 46667777889988887
Q ss_pred C
Q 016353 353 D 353 (391)
Q Consensus 353 D 353 (391)
|
T Consensus 176 D 176 (386)
T PF03599_consen 176 D 176 (386)
T ss_dssp E
T ss_pred c
Confidence 7
No 98
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=64.04 E-value=11 Score=31.33 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhhcCCcCC
Q 016353 6 TCFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~ 24 (391)
..+.+++++++|+||+.-.
T Consensus 2 R~l~~~LL~L~LsGCS~l~ 20 (133)
T PRK10781 2 RALPICLLALMLTGCSMLS 20 (133)
T ss_pred chHHHHHHHHHHhhccccC
Confidence 4577888899999998543
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=62.67 E-value=11 Score=34.66 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=33.5
Q ss_pred CHHHHHHHHHc---CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 300 PTDLVARAHAL---DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 300 ~~~~v~~~~~~---Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
..+.+++++.. |+.|.+|+.+|+... +++.++|++.|+.
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a--------------r~l~~~G~~~vmP 150 (248)
T cd04728 109 PIETLKAAEILVKEGFTVLPYCTDDPVLA--------------KRLEDAGCAAVMP 150 (248)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHcCCCEeCC
Confidence 35677777777 999999999999988 6899999999966
No 100
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=61.20 E-value=98 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHcCCeEEEEeecCccc
Q 016353 297 SQTPTDLVARAHALDLQVHPYTYRNEHQ 324 (391)
Q Consensus 297 ~~~~~~~v~~~~~~Gl~V~~WTvn~~~~ 324 (391)
...++..++.+++.|+.+..|+++..+.
T Consensus 106 G~~~~~~~~~l~~~G~~~v~w~~~~~D~ 133 (191)
T TIGR02764 106 GAFNKAVLKAAESLGYTVVHWSVDSRDW 133 (191)
T ss_pred cCCCHHHHHHHHHcCCeEEEecCCCCcc
Confidence 3457899999999999999999987653
No 101
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=60.77 E-value=14 Score=28.97 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCC-EEEeeeEEc
Q 016353 8 FIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGAD-FIETDILAS 82 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad-~vE~DV~lT 82 (391)
++...++++|+||+++.....+.+..... .....+++.+ ++..+++.+.+-+.+-. ++ +.-+..+.|
T Consensus 5 ll~~~lallLtgCatqt~~~~~~~~~~~~-~~~~~~~ffi-----~Gl~q~~~vdaa~vCgg--~~~v~kvetq~T 72 (97)
T PF06291_consen 5 LLAAALALLLTGCATQTFTVGNQPTAVTP-KKTVSHHFFI-----SGLGQSKEVDAAQVCGG--AEKVAKVETQQT 72 (97)
T ss_pred HHHHHHHHHHcccceeEEEeCCCCccccc-ceeeecceEE-----EecCCcccccHHHhcCC--CccEEEEEEeee
Confidence 34445578999999775543322211111 1122344544 34566777776555543 33 344666665
No 102
>PRK11443 lipoprotein; Provisional
Probab=60.47 E-value=7.2 Score=32.09 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhcCCcCCC
Q 016353 7 CFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~ 25 (391)
-+++++++++|+||++++.
T Consensus 3 ~~~~~~~~~lLsgCa~~~~ 21 (124)
T PRK11443 3 KFIAPLLALLLSGCQIDPY 21 (124)
T ss_pred HHHHHHHHHHHHhccCCCC
Confidence 5666677778999999774
No 103
>PRK11627 hypothetical protein; Provisional
Probab=60.43 E-value=6 Score=35.21 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=17.9
Q ss_pred cchhhHHHHHHHHHhhcCCcCCC
Q 016353 3 ISSTCFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~ 25 (391)
|...+++.++.+++|+||++.+.
T Consensus 1 mlkklll~l~a~~~L~gCA~~p~ 23 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATPSN 23 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCCCC
Confidence 45667777777888999998754
No 104
>PRK09810 entericidin A; Provisional
Probab=60.38 E-value=7 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHhhcCCcCC
Q 016353 3 ISSTCFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~ 24 (391)
|...++++++.+++|+||+.-.
T Consensus 2 Mkk~~~l~~~~~~~L~aCNTv~ 23 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCNTAR 23 (41)
T ss_pred hHHHHHHHHHHHHHHhhhhhcc
Confidence 4445555566677899998643
No 105
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=59.85 E-value=9.2 Score=33.44 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHHhhcCCcCCCC
Q 016353 3 ISSTCFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~ 26 (391)
|+..+|+++...++|+||...+..
T Consensus 14 ~t~k~L~~laa~~lLagC~a~~~t 37 (204)
T COG3056 14 MTKKILFPLAAIFLLAGCAAPPTT 37 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCce
Confidence 577889999999999999986643
No 106
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=59.60 E-value=1.2e+02 Score=26.45 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=82.6
Q ss_pred cccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHH
Q 016353 155 PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSL 234 (391)
Q Consensus 155 ~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l 234 (391)
.|..+.+.+..+++.++.+.+.+|+=..- ... +..++.+.+..-. .- +.|--..++
T Consensus 33 ~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl---------~~~---e~~i~fi~~~~~p-----------dG-IISTk~~~i 88 (181)
T COG1954 33 HILNIKEIVKKLKNRGKTVFIHVDLVEGL---------SND---EVAIEFIKEVIKP-----------DG-IISTKSNVI 88 (181)
T ss_pred hhhhHHHHHHHHHhCCcEEEEEeHHhccc---------CCc---hHHHHHHHHhccC-----------Ce-eEEccHHHH
Confidence 79999999999999998888888875432 112 2333444443211 12 345556666
Q ss_pred HHHhhcC-C-CceEEEEecccccccccccccccccchHHHHHHHhhhhhcCCCcceeeecCCCCCCCCHHHHHHHHHc-C
Q 016353 235 VYISNKT-D-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHAL-D 311 (391)
Q Consensus 235 ~~l~~~~-p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~~~~v~~~~~~-G 311 (391)
..-++.. . ..++|+++...+ ....+.+ ....|+.-.+.| + +-|..++.+.++ +
T Consensus 89 ~~Akk~~~~aIqR~FilDS~Al--------------~~~~~~i----~~~~pD~iEvLP---G---v~Pkvi~~i~~~t~ 144 (181)
T COG1954 89 KKAKKLGILAIQRLFILDSIAL--------------EKGIKQI----EKSEPDFIEVLP---G---VMPKVIKEITEKTH 144 (181)
T ss_pred HHHHHcCCceeeeeeeecHHHH--------------HHHHHHH----HHcCCCEEEEcC---c---ccHHHHHHHHHhcC
Confidence 6666552 2 345677764311 1222223 234454333333 2 457777776554 5
Q ss_pred CeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 312 LQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 312 l~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
.+|.+-+ +++.+++ ..+.+.|+-++.|-+
T Consensus 145 ~piIAGGLi~t~Eev--------------~~Al~aGA~avSTs~ 174 (181)
T COG1954 145 IPIIAGGLIETEEEV--------------REALKAGAVAVSTSN 174 (181)
T ss_pred CCEEeccccccHHHH--------------HHHHHhCcEEEeecc
Confidence 7777776 6777777 467889999998764
No 107
>PRK11059 regulatory protein CsrD; Provisional
Probab=59.39 E-value=56 Score=34.64 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=36.3
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
-..++..+|..|++|.+=.|.+.++. ..+.++|||++.-.+
T Consensus 592 v~sli~~a~~~~i~viAegVEt~~~~--------------~~l~~lGvd~~QG~~ 632 (640)
T PRK11059 592 VRSLVGACAGTETQVFATGVESREEW--------------QTLQELGVSGGQGDF 632 (640)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCHHHH--------------HHHHHhCCCeeecCc
Confidence 36788999999999999999999998 589999999987654
No 108
>PRK00208 thiG thiazole synthase; Reviewed
Probab=58.96 E-value=14 Score=34.04 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.4
Q ss_pred CHHHHHHHHHc---CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 300 PTDLVARAHAL---DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 300 ~~~~v~~~~~~---Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
..+.+++++.. |+.|.+|+.+|.... +++.++|++.|+.
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~~d~~~a--------------k~l~~~G~~~vmP 150 (250)
T PRK00208 109 PIETLKAAEILVKEGFVVLPYCTDDPVLA--------------KRLEEAGCAAVMP 150 (250)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHcCCCEeCC
Confidence 35677777777 999999999999988 6899999999955
No 109
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=55.36 E-value=16 Score=35.42 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=30.7
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
++..++.+|+.|+.|++ ++.+.... ..+.+.|+|+|+.-
T Consensus 125 ~~~~i~~l~~~gi~v~~-~v~s~~~A--------------~~a~~~G~D~iv~q 163 (330)
T PF03060_consen 125 PPEVIERLHAAGIKVIP-QVTSVREA--------------RKAAKAGADAIVAQ 163 (330)
T ss_dssp -HHHHHHHHHTT-EEEE-EESSHHHH--------------HHHHHTT-SEEEEE
T ss_pred hHHHHHHHHHcCCcccc-ccCCHHHH--------------HHhhhcCCCEEEEe
Confidence 48999999999998886 77777776 47889999999965
No 110
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=54.83 E-value=17 Score=35.09 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
|.-++.+|+.|++|+ +++-+.... +++.+.|||+||--
T Consensus 93 P~~~~~lk~~Gi~v~-~~v~s~~~A--------------~~a~~~GaD~vVaq 130 (320)
T cd04743 93 PDQARALEAIGISTY-LHVPSPGLL--------------KQFLENGARKFIFE 130 (320)
T ss_pred hHHHHHHHHCCCEEE-EEeCCHHHH--------------HHHHHcCCCEEEEe
Confidence 344799999999998 566666665 47889999999965
No 111
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=54.82 E-value=18 Score=32.37 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..+++.+++.|+.|.+..|++.++. ..+.++|+|.+.-++
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~~~--------------~~l~~~G~~~~QG~~ 232 (236)
T PF00563_consen 193 QSLINLAKSLGIKVIAEGVESEEQL--------------ELLKELGVDYIQGYL 232 (236)
T ss_dssp HHHHHHHHHTT-EEEEECE-SHHHH--------------HHHHHTTESEEESTT
T ss_pred HHHHHHhhccccccceeecCCHHHH--------------HHHHHcCCCEEEeCC
Confidence 5678899999999999999999988 689999999987654
No 112
>PRK10060 RNase II stability modulator; Provisional
Probab=54.70 E-value=94 Score=33.17 Aligned_cols=41 Identities=27% Similarity=0.218 Sum_probs=35.7
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
-..++..+|..|++|.+=.|.+.+++ ..+.++|||.+.--+
T Consensus 600 v~~ii~~a~~lg~~viAeGVEt~~q~--------------~~l~~~G~d~~QGy~ 640 (663)
T PRK10060 600 VRAIVAVAQALNLQVIAEGVETAKED--------------AFLTKNGVNERQGFL 640 (663)
T ss_pred HHHHHHHHHHCCCcEEEecCCCHHHH--------------HHHHHcCCCEEecCc
Confidence 36678889999999999999999988 589999999887653
No 113
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=53.84 E-value=6.6 Score=25.72 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhhcCCcC
Q 016353 7 CFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (391)
..++++++++|+||.++
T Consensus 6 ~~~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 6 FIGIFLLTMLLAACQAN 22 (46)
T ss_pred EeHHHHHHHHHHHhhhc
Confidence 33445555899999976
No 114
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=53.40 E-value=12 Score=34.97 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=29.4
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhH
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSL 358 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l 358 (391)
--++++.+|++|+...+|.+|.++ . +++.+.|+|.|+..-.-+.
T Consensus 139 EVemi~~A~~~gl~T~~yvf~~e~-A--------------~~M~~AGaDiiv~H~GlT~ 182 (268)
T PF09370_consen 139 EVEMIRKAHEKGLFTTAYVFNEEQ-A--------------RAMAEAGADIIVAHMGLTT 182 (268)
T ss_dssp HHHHHHHHHHTT-EE--EE-SHHH-H--------------HHHHHHT-SEEEEE-SS--
T ss_pred HHHHHHHHHHCCCeeeeeecCHHH-H--------------HHHHHcCCCEEEecCCccC
Confidence 368999999999999999996555 3 4688999999998764333
No 115
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=53.36 E-value=94 Score=30.76 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCcc--EEEeC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVD--GLFTD 353 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVd--gIiTD 353 (391)
.++.+.++++|..|.+|+.++.+.. ++....+.++|+. -|+-|
T Consensus 230 ~~ia~lAk~yg~~Vvv~s~~Din~a----------k~Ln~kL~~~Gv~~eDIVlD 274 (389)
T TIGR00381 230 EKIANAAKKYGHVVLSWTIMDINMQ----------KTLNRYLLKRGLMPRDIVMD 274 (389)
T ss_pred HHHHHHHHHhCCeEEEEcCCcHHHH----------HHHHHHHHHcCCCHHHEEEc
Confidence 4677888999999999998887766 4666777788888 77766
No 116
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.32 E-value=1.2e+02 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHc--CCeE-EEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 297 SQTPTDLVARAHAL--DLQV-HPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 297 ~~~~~~~v~~~~~~--Gl~V-~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
...++++++.+++. ++++ +.-.+.+.+++ +.+.++|+|+|++-.
T Consensus 163 ~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a--------------~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 163 EPVPPELVAEVKKVLDKARLFVGGGIRSVEKA--------------REMAEAGADTIVTGN 209 (223)
T ss_pred CCcCHHHHHHHHHHcCCCCEEEecCCCCHHHH--------------HHHHHcCCCEEEECc
Confidence 44679999999875 5666 45568999988 578889999999864
No 117
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.96 E-value=1.9e+02 Score=26.81 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEE
Q 016353 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILA 81 (391)
Q Consensus 42 ~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~l 81 (391)
.++..|+|=-++.--+|-|...++...+.|+|.||+-|=.
T Consensus 8 ~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPf 47 (256)
T TIGR00262 8 GEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPF 47 (256)
T ss_pred CCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4566777765555567889999999999999999997754
No 118
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=52.58 E-value=76 Score=32.30 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccE
Q 016353 298 QTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDG 349 (391)
Q Consensus 298 ~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdg 349 (391)
.+.+..++.+|..|+++.+-+|.+.++. .+|.+.||+.
T Consensus 458 ~I~~hII~MAk~L~L~iVaEGVEteeQ~--------------~~LR~~Gv~~ 495 (524)
T COG4943 458 LIAPHIIEMAKSLGLKIVAEGVETEEQV--------------DWLRKRGVHY 495 (524)
T ss_pred hhHHHHHHHHHHcCCcEEeecccHHHHH--------------HHHHHcCCcc
Confidence 4679999999999999999999999987 5899999864
No 119
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=52.46 E-value=19 Score=30.44 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCcCCCC
Q 016353 9 IPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~ 26 (391)
++++++++|+||++.++.
T Consensus 5 ~~l~~~llL~gC~s~~~~ 22 (146)
T TIGR03352 5 VLLAACLLLAGCSSAPPP 22 (146)
T ss_pred HHHHHHHHHhhccCCCCC
Confidence 444455689999987654
No 120
>PRK15396 murein lipoprotein; Provisional
Probab=50.03 E-value=15 Score=27.65 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcCCcCC
Q 016353 9 IPLLFLSLIAGCAARP 24 (391)
Q Consensus 9 ~~~~~~~l~~~~~~~~ 24 (391)
.+.+.++||+||++.+
T Consensus 10 av~ls~~LLaGCAs~~ 25 (78)
T PRK15396 10 AVILGSTLLAGCSSNA 25 (78)
T ss_pred HHHHHHHHHHHcCCch
Confidence 3344456899999863
No 121
>PRK15452 putative protease; Provisional
Probab=49.82 E-value=36 Score=34.50 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCeEEEEeecCcc---cccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhc
Q 016353 301 TDLVARAHALDLQVHPYTYRNEH---QFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQEL 364 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~---~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~ 364 (391)
.+.++.+|++|.+|++ |+|... ++ +....+...+.++||||||.-.|..+.-+++.
T Consensus 49 ~eav~~ah~~g~kvyv-t~n~i~~e~el-------~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~ 107 (443)
T PRK15452 49 ALGINEAHALGKKFYV-VVNIAPHNAKL-------KTFIRDLEPVIAMKPDALIMSDPGLIMMVREH 107 (443)
T ss_pred HHHHHHHHHcCCEEEE-EecCcCCHHHH-------HHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHh
Confidence 4567889999999987 444221 11 11233345667899999999999998777764
No 122
>PRK13561 putative diguanylate cyclase; Provisional
Probab=49.07 E-value=95 Score=32.87 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=39.7
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC---chhHHHH
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF---PGSLHNY 361 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~---P~~l~~~ 361 (391)
-..+++.+|..|++|.+=.|.++++. ..+.++|+|++.--+ |..+.++
T Consensus 593 v~~i~~~a~~l~i~viAegVE~~~~~--------------~~l~~~g~d~~QG~~~~~P~~~~~~ 643 (651)
T PRK13561 593 VAAIIMLAQSLNLQVIAEGVETEAQR--------------DWLLKAGVGIAQGFLFARALPIEIF 643 (651)
T ss_pred HHHHHHHHHHCCCcEEEecCCCHHHH--------------HHHHhcCCCEEeCCcccCCCCHHHH
Confidence 35688999999999999999999998 689999999888764 5555444
No 123
>COG5510 Predicted small secreted protein [Function unknown]
Probab=48.87 E-value=13 Score=24.30 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhcCCc
Q 016353 6 TCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~ 22 (391)
.++++++.+++++||+-
T Consensus 8 ~i~~vll~s~llaaCNT 24 (44)
T COG5510 8 LIALVLLASTLLAACNT 24 (44)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45667788899999964
No 124
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=48.84 E-value=28 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 016353 301 TDLVARAHALDLQVHPYT 318 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WT 318 (391)
..+|+.+|++|+.|++|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 689999999999999998
No 125
>PRK00865 glutamate racemase; Provisional
Probab=48.57 E-value=2e+02 Score=26.75 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=49.7
Q ss_pred cccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcc---cHHHHHHHHHHHcCCCCcccccccCCCCEEEEccCh
Q 016353 155 PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGK---KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP 231 (391)
Q Consensus 155 ~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~---~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~ 231 (391)
.+.-|+++.+.+++. ++...-|.+.-++-.. +.+ .++..+++.+.+.|.+ -+++.|+..
T Consensus 17 GLtvl~~i~~~lp~~--~~iY~~D~~~~PYG~k-----s~~~i~~~~~~~~~~L~~~g~d-----------~iVIaCNTa 78 (261)
T PRK00865 17 GLTVLREIRRLLPDE--HIIYVGDTARFPYGEK-----SEEEIRERTLEIVEFLLEYGVK-----------MLVIACNTA 78 (261)
T ss_pred HHHHHHHHHHHCCCC--CEEEEecCCCCCCCCC-----CHHHHHHHHHHHHHHHHhCCCC-----------EEEEeCchH
Confidence 467788988888754 4777778887554321 112 3444555566666654 488888887
Q ss_pred h--HHHHHhhcCCCceEE
Q 016353 232 T--SLVYISNKTDSPKIF 247 (391)
Q Consensus 232 ~--~l~~l~~~~p~~~~~ 247 (391)
. .+..+++..+.|.+.
T Consensus 79 ~~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 79 SAVALPDLRERYDIPVVG 96 (261)
T ss_pred HHHHHHHHHHhCCCCEEe
Confidence 5 578898887777665
No 126
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=47.76 E-value=1.6e+02 Score=27.54 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHcCCeEEEEeecCccc
Q 016353 297 SQTPTDLVARAHALDLQVHPYTYRNEHQ 324 (391)
Q Consensus 297 ~~~~~~~v~~~~~~Gl~V~~WTvn~~~~ 324 (391)
...+...++.+++.|+.+..|+++..+.
T Consensus 185 G~~n~~~~~~l~~~G~~~v~Wsvd~~Dw 212 (268)
T TIGR02873 185 GSFNDNVVQIAADLQMGTIMWTVDTIDW 212 (268)
T ss_pred CCCCHHHHHHHHHCCCeEEEeccCCCCC
Confidence 3457899999999999999999987664
No 127
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.48 E-value=12 Score=32.64 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCcchhhHHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCE-EEecCCCCCCCchh-HHHHHHHHHHcCCCEEEee
Q 016353 1 MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPY-NLAHRGSNGEFPEE-TAAAYMRAIEEGADFIETD 78 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiaHRG~~~~~pEN-Tl~Af~~A~~~Gad~vE~D 78 (391)
|.+| ..++.+++|+||++..+. ..-..++...+. +.+-+|++....|- .++.+- ..++|
T Consensus 1 Mm~w----l~~~aal~L~~Cas~~p~-------~~~yqLp~~~~~~~~a~~g~r~l~v~~V~ladyL-----~~~gi--- 61 (190)
T COG3009 1 MMRW----LMIIAALLLAGCASGEPS-------KQYYQLPVAASAPVPASQGGRLLWVEPVRLADYL-----KRNGI--- 61 (190)
T ss_pred CchH----HHHHHHHHHHhcCCCCCC-------ceEEEccccccCCcccccccceEEEeeechhhhh-----cCCce---
Confidence 5666 567788999999994211 123344444554 68889987654332 233222 12232
Q ss_pred eEEcCCCeEEEEcCCCc
Q 016353 79 ILASKDGVLICHHDVFL 95 (391)
Q Consensus 79 V~lTkDg~~Vv~HD~~l 95 (391)
|..|.|+++++..+.-.
T Consensus 62 Vyrtsd~q~~~a~nn~W 78 (190)
T COG3009 62 VYRTSDVQLVIANNNRW 78 (190)
T ss_pred EEEcCChheeehhhccc
Confidence 88999999999888543
No 128
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=47.31 E-value=93 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCC
Q 016353 57 PEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94 (391)
Q Consensus 57 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 94 (391)
..|--.++..-++.|+++++++++...++.+.++|...
T Consensus 32 ~~~Q~~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~ 69 (279)
T cd08586 32 VQCQDWSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPF 69 (279)
T ss_pred eecCCCCHHHHHhcCCeEEEEEeeecCCCeEEEEccCc
Confidence 45666778888889999999999998778999999654
No 129
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=46.15 E-value=83 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=33.9
Q ss_pred CHHHHHHHHHcCCeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeC----CchhHHH
Q 016353 300 PTDLVARAHALDLQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD----FPGSLHN 360 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD----~P~~l~~ 360 (391)
+-++++++.+.+.+|.+-. ++++++. .+++++|+++|+-- +|....+
T Consensus 133 D~~lv~~l~~~~~pvIaEGri~tpe~a--------------~~al~~GA~aVVVGsAITrP~~It~ 184 (192)
T PF04131_consen 133 DFELVRELVQADVPVIAEGRIHTPEQA--------------AKALELGAHAVVVGSAITRPQEITK 184 (192)
T ss_dssp HHHHHHHHHHTTSEEEEESS--SHHHH--------------HHHHHTT-SEEEE-HHHH-HHHHHH
T ss_pred CHHHHHHHHhCCCcEeecCCCCCHHHH--------------HHHHhcCCeEEEECcccCCHHHHHH
Confidence 4678888889999988876 7888887 57899999999876 6666543
No 130
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=45.91 E-value=47 Score=30.49 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcC
Q 016353 4 SSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASK 83 (391)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTk 83 (391)
....+++.+.++.|+||..+..+..-.|. .-..-.|+----.|- .| + .-|.+||.-+.|.+
T Consensus 5 ~~~~~~~a~~l~~l~gC~~~~~~~~~~~~-----~~~~l~p~~gtY~G~---LP-----C------ADC~GI~ttLtL~~ 65 (234)
T PRK10523 5 AIITALAAAGLFTLMGCNNRAEVDTLSPA-----QAAELKPMQQSWRGV---LP-----C------ADCEGIETSLFLEK 65 (234)
T ss_pred HHHHHHHHHHHHHhhccCCcccccccccc-----cccccCccccEEeEE---EE-----C------CCCCCceEEEEEcC
Confidence 34445556666779999988753221111 001112322233332 11 0 14668999999999
Q ss_pred CCeEEEEcCCCcc
Q 016353 84 DGVLICHHDVFLD 96 (391)
Q Consensus 84 Dg~~Vv~HD~~l~ 96 (391)
||..++ +..-+.
T Consensus 66 DgTY~L-~~~Ylg 77 (234)
T PRK10523 66 DGTWVM-NERYLG 77 (234)
T ss_pred CCCEEE-EEEEcC
Confidence 997653 443343
No 131
>PF12912 N_NLPC_P60: NLPC_P60 stabilising domain, N term; PDB: 3M1U_B.
Probab=45.53 E-value=7.3 Score=31.92 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCcCCCCC
Q 016353 7 CFIPLLFLSLIAGCAARPLYP 27 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~ 27 (391)
++++++++++++||+...+..
T Consensus 1 ~~~~~l~~lll~gCs~k~~~~ 21 (124)
T PF12912_consen 1 YIILLLALLLLAGCSSKTPPP 21 (124)
T ss_dssp ---------------------
T ss_pred CHHHHHHHHHHHHhCCCCCCC
Confidence 467888888999999987653
No 132
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=45.16 E-value=55 Score=30.57 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccc-cccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHhccCCCC---------C
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLH-FNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQELTSPVS---------K 370 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~-~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~~~~~~~---------~ 370 (391)
...+..+|+.|+++..|..-.-..+.. +.++++-.....+...++|+|.|=|++|.--..|.+..+-|. |
T Consensus 133 ~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k 212 (265)
T COG1830 133 SQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPK 212 (265)
T ss_pred HHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCC
Confidence 466788999999999996422222210 122333334444456689999999999976666655444442 4
Q ss_pred CchHHHHHhhhhhhhcc
Q 016353 371 DNRASKLLHKIAVLISS 387 (391)
Q Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (391)
.+-..-+|.....+|.+
T Consensus 213 ~~~~~~~l~~~~~ai~a 229 (265)
T COG1830 213 TETEREFLEMVTAAIEA 229 (265)
T ss_pred CCChHHHHHHHHHHHHc
Confidence 44556666666666655
No 133
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=44.75 E-value=21 Score=31.80 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHhhcCCc
Q 016353 4 SSTCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~ 22 (391)
+..++++++++++|+||+.
T Consensus 2 ~~~~~~~~~~~llL~gCa~ 20 (202)
T PRK00022 2 RRLLRLLLLAALLLAGCAV 20 (202)
T ss_pred chhHHHHHHHHHHHHhCCC
Confidence 4456677777788999973
No 134
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=44.51 E-value=17 Score=31.48 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhcCCcC
Q 016353 5 STCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~ 23 (391)
+.++++++.+++|+||++.
T Consensus 4 ~~~li~l~~~LlL~GCAg~ 22 (171)
T PRK13733 4 ISLLIPLLGTLLLSGCAGT 22 (171)
T ss_pred hhHHHHHHHHHHhccccCC
Confidence 3566777888899999984
No 135
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.30 E-value=55 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.9
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCcc
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVD 348 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVd 348 (391)
..+++++++++|++++.-|-|....- +++.++|..+|++
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~----------~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSR----------EEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-H----------HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCH----------HHHHHHHHhcCcC
Confidence 47899999999999999996654432 4566788899987
No 136
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=43.66 E-value=21 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhcCCcCC
Q 016353 8 FIPLLFLSLIAGCAARP 24 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~~ 24 (391)
..+.+.++||+||++.+
T Consensus 8 ~aviLs~~LLaGCAs~~ 24 (85)
T PRK09973 8 GAVVLATCLLSGCVNEQ 24 (85)
T ss_pred HHHHHHHHHHHHcCCch
Confidence 33444456889999864
No 137
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=43.46 E-value=26 Score=32.41 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeEEcC-CCeEEEEcCCCc
Q 016353 58 EETAAAYMRAIEEGADFIETDILASK-DGVLICHHDVFL 95 (391)
Q Consensus 58 ENTl~Af~~A~~~Gad~vE~DV~lTk-Dg~~Vv~HD~~l 95 (391)
.|--..+...++.|++++|+||+... ++.+.++|....
T Consensus 37 ~~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~~ 75 (271)
T cd08557 37 KTQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLFL 75 (271)
T ss_pred hccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEccccc
Confidence 45556788899999999999999987 789999996544
No 138
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=42.39 E-value=35 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
+.++++++|++|+.|++ ++.+.+.. ..+.+.|+|+|+..
T Consensus 98 p~~~i~~lk~~g~~v~~-~v~s~~~a--------------~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 98 PGKYIPRLKENGVKVIP-VVASVALA--------------KRMEKAGADAVIAE 136 (307)
T ss_pred cHHHHHHHHHcCCEEEE-EcCCHHHH--------------HHHHHcCCCEEEEE
Confidence 45699999999999875 66666655 46888999999974
No 139
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=41.49 E-value=2.4e+02 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhc
Q 016353 199 DKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK 240 (391)
Q Consensus 199 ~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~ 240 (391)
.+.++.+.++++ ++++.|||+++++.--+.
T Consensus 149 a~ave~v~~~~~------------pv~l~s~dpevmkaaLev 178 (467)
T COG1456 149 AEAVEKVAEAGL------------PVILCSFDPEVMKAALEV 178 (467)
T ss_pred HHHHHHHHhcCC------------cEEEEeCCHHHHHHHHHH
Confidence 445566667774 599999999998765554
No 140
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=41.13 E-value=23 Score=28.55 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=16.3
Q ss_pred CCcchhhHHHHHHHHHhhcCCcC
Q 016353 1 MGISSTCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~ 23 (391)
|-+.....++++++++|+||+..
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~~ 23 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCSTL 23 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCCC
Confidence 55666656666777889999763
No 141
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.68 E-value=3.1e+02 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCchhHHHHHHHHHHcCCCEEEeeeEE
Q 016353 55 EFPEETAAAYMRAIEEGADFIETDILA 81 (391)
Q Consensus 55 ~~pENTl~Af~~A~~~Gad~vE~DV~l 81 (391)
-.+|-|++.++...+.|+|.+|+=|=.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPf 54 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPF 54 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCC
Confidence 368999999999999999999996644
No 142
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=39.52 E-value=59 Score=28.87 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhH
Q 016353 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS 233 (391)
Q Consensus 196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~ 233 (391)
.+...+.+++...|... .|+++.++++..
T Consensus 103 ~m~~eir~~l~~~Gv~~---------~ri~~~~y~a~~ 131 (224)
T COG5461 103 RMAKEIRRLLAGSGVDR---------ARIRVVNYDASS 131 (224)
T ss_pred HHHHHHHHHHHhcCCCc---------ceeEEEEecccc
Confidence 46677788888888874 588888888753
No 143
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=38.67 E-value=26 Score=25.87 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHhhcCCcC
Q 016353 4 SSTCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~ 23 (391)
.++++...+.+++|+||.++
T Consensus 5 ~m~l~Avvlg~lllAGc~s~ 24 (78)
T COG4238 5 KMTLGAVVLGSLLLAGCSSN 24 (78)
T ss_pred hhhHHHHHHHHHHHHhcchH
Confidence 46778888899999999985
No 144
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=38.13 E-value=36 Score=32.82 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCcchhhHHHHHHHHHhhcCCcCCC
Q 016353 1 MGISSTCFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~ 25 (391)
|+-...+++.+++.++|+||.+.+.
T Consensus 1 ~k~~~~~v~~al~v~~LaaCSs~~~ 25 (342)
T COG3317 1 MKSSAKLVLGALLVLLLAACSSDSE 25 (342)
T ss_pred CchHHHHHHHHHHHHHHhhccCCcc
Confidence 5556778888999999999997654
No 145
>PRK09776 putative diguanylate cyclase; Provisional
Probab=38.05 E-value=1.9e+02 Score=32.57 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=43.6
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC---CchhHHHHHhccCC
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD---FPGSLHNYQELTSP 367 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD---~P~~l~~~~~~~~~ 367 (391)
-..+++.+|+.|++|.+=.|.+.++. ..+.++|+|.+.-. .|....++++..++
T Consensus 1033 ~~~i~~~~~~~~~~~iaegVEt~~~~--------------~~l~~~g~~~~QG~~~~~P~~~~~~~~~~~~ 1089 (1092)
T PRK09776 1033 ISIIQGHAQRLGMKTIAGPVELPLVL--------------DTLSGIGVDLAYGYAIARPQPLDLLLNSSYF 1089 (1092)
T ss_pred HHHHHHHHHHcCCcEEecccCCHHHH--------------HHHHHcCCCEEeccccCCCCcHHHHHhhhhc
Confidence 35677899999999999999999988 58999999998876 47666666664443
No 146
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=37.94 E-value=47 Score=30.93 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=33.6
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchh
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGS 357 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~ 357 (391)
.+++++.+|++|++|.+|+---..+. + .+.+.+.+.+.||||+-+|.-+-
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~v~~w-----~---~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPYIREW-----W---AEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChhHHHH-----H---HHHHHHhhccCCCCEEeccCCCC
Confidence 58899999999999999984322111 0 11222233678999999995443
No 147
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.09 E-value=64 Score=31.18 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEE--eCCchhHHHHHhccCCCCCC--chH
Q 016353 299 TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLF--TDFPGSLHNYQELTSPVSKD--NRA 374 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIi--TD~P~~l~~~~~~~~~~~~~--~~~ 374 (391)
+-.--++.+++.|.+|.+---.+...- ..+..+|+|..+ |..|+.+.++.+.++...+- |++
T Consensus 193 LGh~aVq~AKAMG~rV~vis~~~~kke--------------ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a 258 (360)
T KOG0023|consen 193 LGHMAVQYAKAMGMRVTVISTSSKKKE--------------EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA 258 (360)
T ss_pred cchHHHHHHHHhCcEEEEEeCCchhHH--------------HHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc
Confidence 456778999999999988754431211 245668988754 55799999998888765432 447
Q ss_pred HHHHhhhhhhhccCCCC
Q 016353 375 SKLLHKIAVLISSNGKV 391 (391)
Q Consensus 375 ~~~~~~~~~~~~~~~~~ 391 (391)
..=+..+..+.-.+|++
T Consensus 259 ~~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 259 EHALEPLLGLLKVNGTL 275 (360)
T ss_pred ccchHHHHHHhhcCCEE
Confidence 77777888888888764
No 148
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.95 E-value=1.8e+02 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 299 TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
.++++++.++++|+.+.+ .+-++.++ ....++|+|.|=-
T Consensus 89 ~~~~v~~~~~~~~i~~iP-G~~TptEi--------------~~A~~~Ga~~vKl 127 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIP-GVATPSEI--------------MLALELGITALKL 127 (204)
T ss_pred CCHHHHHHHHHcCCcEEC-CCCCHHHH--------------HHHHHCCCCEEEE
Confidence 379999999999999888 55666666 3678899987643
No 149
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.90 E-value=3.5e+02 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEc
Q 016353 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILAS 82 (391)
Q Consensus 42 ~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lT 82 (391)
.++..|.|==++.--.|-|+..+....+.|+|.||+-+=.|
T Consensus 10 ~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfS 50 (258)
T PRK13111 10 GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFS 50 (258)
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 45666777655545678899999999999999999987653
No 150
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=36.41 E-value=35 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=36.0
Q ss_pred CEEEecCCCCC-----CCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcC
Q 016353 44 PYNLAHRGSNG-----EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92 (391)
Q Consensus 44 p~iiaHRG~~~-----~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD 92 (391)
.++-+|-.... ....|--.++...++.|++++|+||+.. ++.+.++|.
T Consensus 16 t~~gtHNS~~~~~~~~~~~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~ 68 (270)
T cd08588 16 TFLTTHNSFANSEDAFFLAPNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHS 68 (270)
T ss_pred eeEEeccCccccCCCcccccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECC
Confidence 44557765422 2345666788999999999999999995 777889995
No 151
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=36.24 E-value=2.6e+02 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHc--CCeEEEE-eecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 299 TPTDLVARAHAL--DLQVHPY-TYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 299 ~~~~~v~~~~~~--Gl~V~~W-Tvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
.++++++.+++. ++++.+- .++++++. +.+.+.|+|+|+.-.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a--------------~~l~~aGAD~VVVGs 205 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQA--------------KEMAEAGADTIVVGN 205 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHH--------------HHHHHcCCCEEEECc
Confidence 689999999886 5666554 58888888 578889999998764
No 152
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=35.75 E-value=96 Score=27.04 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=40.0
Q ss_pred CHHHHHHHHHcCCeEEEEe-----ecCcccccccccCCCchHHHHHHHH-HcCccEEEeCCchhHHHHHhccCCC
Q 016353 300 PTDLVARAHALDLQVHPYT-----YRNEHQFLHFNFLQDPYREYDYWIN-KIGVDGLFTDFPGSLHNYQELTSPV 368 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WT-----vn~~~~~~~~~~~~~~~~~~~~~l~-~~GVdgIiTD~P~~l~~~~~~~~~~ 368 (391)
-++.+..++++|..|+... +.+.+... +.+. ..+.|||||-.+..+...++..-.+
T Consensus 37 ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i-------------~fi~~~~~pdGIISTk~~~i~~Akk~~~~a 98 (181)
T COG1954 37 IKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAI-------------EFIKEVIKPDGIISTKSNVIKKAKKLGILA 98 (181)
T ss_pred HHHHHHHHHhCCcEEEEEeHHhcccCCchHHH-------------HHHHHhccCCeeEEccHHHHHHHHHcCCce
Confidence 3788999999999999884 33333221 2333 3569999999999998887754443
No 153
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=35.55 E-value=28 Score=28.15 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.5
Q ss_pred HHHHHHHHhhcCCcCCCC
Q 016353 9 IPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~ 26 (391)
++.+.++++.||.+.+..
T Consensus 6 ~~~l~~~lLvGCsS~~~i 23 (123)
T COG5633 6 LLSLALLLLVGCSSHQEI 23 (123)
T ss_pred HHHHHHHHhhccCCCCCc
Confidence 378888999999997653
No 154
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=34.99 E-value=22 Score=31.37 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHhhcCCcC
Q 016353 5 STCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~ 23 (391)
..+| +++++++|+||++-
T Consensus 4 ~~ll-l~~~~l~LsgCasv 21 (182)
T TIGR00752 4 KGLL-FTALCFGLTGCIAP 21 (182)
T ss_pred EEeh-HHHHHHHHhcccCC
Confidence 3444 55567889999983
No 155
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=34.98 E-value=38 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHhhcCCcCCCCC
Q 016353 3 ISSTCFIPLLFLSLIAGCAARPLYP 27 (391)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~ 27 (391)
|..+||..+.++++++||......+
T Consensus 1 mkr~Lla~la~~~llAgC~~~ed~~ 25 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQAEDGA 25 (176)
T ss_pred CchhHHHHHHHHHHHHhcchhhcCC
Confidence 4567788889999999999854433
No 156
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=34.90 E-value=3.4e+02 Score=24.43 Aligned_cols=27 Identities=7% Similarity=-0.009 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHcCCeEEEEeecCcc
Q 016353 297 SQTPTDLVARAHALDLQVHPYTYRNEH 323 (391)
Q Consensus 297 ~~~~~~~v~~~~~~Gl~V~~WTvn~~~ 323 (391)
...++..++.+++.|+.+..|+++..+
T Consensus 138 G~~~~~~~~~l~~~Gy~~v~w~v~~~D 164 (224)
T TIGR02884 138 GVFSERTLAYTKELGYYTVFWSLAFKD 164 (224)
T ss_pred CCcCHHHHHHHHHcCCcEEeccccCcc
Confidence 345788999999999999999997554
No 157
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=34.84 E-value=55 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.1
Q ss_pred CCcchhhHHHHHHHHHhhcCCc
Q 016353 1 MGISSTCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~ 22 (391)
|.+...+..+++++++++||++
T Consensus 1 mtk~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSS 22 (200)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 5667778889999999999998
No 158
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=34.47 E-value=32 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhhcCCcCC
Q 016353 7 CFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~ 24 (391)
++++++++++|+||++.+
T Consensus 4 ~~~~l~~~llLsgCa~~~ 21 (202)
T TIGR00548 4 LFLALSALALLTACAGLT 21 (202)
T ss_pred eHHHHHHHHHHhhccCCC
Confidence 445555667899997643
No 159
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=34.28 E-value=30 Score=27.04 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=13.7
Q ss_pred eeeEEcCCC-eEEEEcCC
Q 016353 77 TDILASKDG-VLICHHDV 93 (391)
Q Consensus 77 ~DV~lTkDg-~~Vv~HD~ 93 (391)
..|-+|.|| .+||+|-.
T Consensus 4 ~~iavT~dG~tIVcwHP~ 21 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHPE 21 (96)
T ss_pred eeEEEecCCCEEEEeCCC
Confidence 457899999 88888864
No 160
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=33.70 E-value=39 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=15.0
Q ss_pred CcchhhHHHHHHHHHhhcCCcCCC
Q 016353 2 GISSTCFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~ 25 (391)
.++.+.+++.++.++|+||..+..
T Consensus 3 ~~~l~~l~~~l~~~~L~GCQq~~~ 26 (128)
T TIGR01004 3 GNILKCIAFGLCCVSLSGCQQNPA 26 (128)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCC
Confidence 344444555555566999997663
No 161
>PRK06852 aldolase; Validated
Probab=33.54 E-value=1.1e+02 Score=29.40 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc--------hhHHHHHh
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP--------GSLHNYQE 363 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P--------~~l~~~~~ 363 (391)
.++++.+|+.|+++.+|..-.-..+.. ..+.+--...-+...++|+|.|=|++| +.+.+..+
T Consensus 157 ~~v~~ea~~~GlPll~~~yprG~~i~~-~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~ 226 (304)
T PRK06852 157 AQIIYEAHKHGLIAVLWIYPRGKAVKD-EKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL 226 (304)
T ss_pred HHHHHHHHHhCCcEEEEeeccCcccCC-CccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH
Confidence 456689999999999997644333210 000011122223456899999999999 45555554
No 162
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=33.45 E-value=38 Score=31.45 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCcchhhHHHHHHHHHhhcCCcCCCC
Q 016353 1 MGISSTCFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 26 (391)
|.++..++.+++..++.+||++....
T Consensus 3 ~~~~~~i~~lll~lllva~C~~s~~~ 28 (310)
T COG4594 3 MKKTAIILTLLLLLLLVAACSSSDNN 28 (310)
T ss_pred chhhHHHHHHHHHHHHHHHhcCcCcc
Confidence 44566667777778888999987654
No 163
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=33.16 E-value=29 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhcCCcC
Q 016353 8 FIPLLFLSLIAGCAAR 23 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~ 23 (391)
+.+++.+++++||+.-
T Consensus 10 ~~~l~~~~~l~~CnTv 25 (48)
T PRK10081 10 FSVLVLSTVLTACNTT 25 (48)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 4556666678999753
No 164
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.07 E-value=61 Score=27.34 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHcCCe---EEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 296 YSQTPTDLVARAHALDLQ---VHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 296 ~~~~~~~~v~~~~~~Gl~---V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
+...-+.+++.++++|.. |.+-.+=-++++ +.+.++|+|+|++=
T Consensus 76 h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~--------------~~l~~~G~~~if~p 122 (143)
T COG2185 76 HLTLVPGLVEALREAGVEDILVVVGGVIPPGDY--------------QELKEMGVDRIFGP 122 (143)
T ss_pred HHHHHHHHHHHHHHhCCcceEEeecCccCchhH--------------HHHHHhCcceeeCC
Confidence 344468899999999953 344444444444 46888999999974
No 165
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=32.79 E-value=1.8e+02 Score=28.40 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCeEEEEeecCccccccc-ccCCCc--hHHHHHHHHHcCccEEEeCCchhHHHHHh
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHF-NFLQDP--YREYDYWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~-~~~~~~--~~~~~~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
.+.++.+|+.|+++.+|..-.-..+... +|-.++ -...-+...++|+|.|=|++|.....|.+
T Consensus 182 ~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~ 247 (348)
T PRK09250 182 SEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKA 247 (348)
T ss_pred HHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHH
Confidence 4566899999999999975444333110 011111 12233445689999999999976555444
No 166
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=32.38 E-value=41 Score=29.88 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCCCCCchhHHHHH-HHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 51 GSNGEFPEETAAAY-MRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 51 G~~~~~pENTl~Af-~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
|..+.+.=|-++.- +.|...|+--+|.-|++-||.+.|-.||...
T Consensus 256 gsdgharfnelatkaqiaqsfgavnletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 256 GSDGHARFNELATKAQIAQSFGAVNLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred CCcchhHHHHHHHHHHHHHhcCccceeeeeeccccceeeecccceE
Confidence 33333444555443 3345569999999999999999999999755
No 167
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=32.08 E-value=1.3e+02 Score=27.06 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=38.9
Q ss_pred CHHHHHHHHHcCCeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeC----CchhHHHH
Q 016353 300 PTDLVARAHALDLQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD----FPGSLHNY 361 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD----~P~~l~~~ 361 (391)
+-.+++.+.+.|..|.+-. +|+++.. +..++.|+++|+.- +|+.+.++
T Consensus 169 Df~lvk~l~~~~~~vIAEGr~~tP~~A--------------k~a~~~Ga~aVvVGsAITRp~~It~~ 221 (229)
T COG3010 169 DFQLVKQLSDAGCRVIAEGRYNTPEQA--------------KKAIEIGADAVVVGSAITRPEEITQW 221 (229)
T ss_pred cHHHHHHHHhCCCeEEeeCCCCCHHHH--------------HHHHHhCCeEEEECcccCCHHHHHHH
Confidence 5688999999999999987 7888887 57889999999865 56655443
No 168
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=31.94 E-value=4.1e+02 Score=24.49 Aligned_cols=130 Identities=19% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccceeccc
Q 016353 50 RGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDF 129 (391)
Q Consensus 50 RG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dl 129 (391)
|.+++..-.+=+.+-..|.+.|||+|=+ ++..|.. .|.|-
T Consensus 16 RnaR~~~~Pd~v~aA~~a~~aGAdgITv--HlReDrR--------------------------------------HI~d~ 55 (239)
T PRK05265 16 RNARGTNYPDPVRAALIAEQAGADGITV--HLREDRR--------------------------------------HIRDR 55 (239)
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCEEEe--cCCCCcc--------------------------------------cCCHH
Confidence 4444443345677777889999998743 3333322 35555
Q ss_pred CHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcC-CceeEEEeecCchhccccccccCcccHHHHHHHHHHHc
Q 016353 130 TLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQ-RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKY 208 (391)
Q Consensus 130 t~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 208 (391)
+...|+++.-. .+ + .....-+|+++.+.+.. ..+.+..|-+........+......+....+++.+++.
T Consensus 56 Dv~~L~~~~~~-~l-------N--lE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~ 125 (239)
T PRK05265 56 DVRLLRETLKT-EL-------N--LEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDA 125 (239)
T ss_pred HHHHHHHhcCC-CE-------E--eccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHC
Confidence 55555554321 11 1 23334578888887653 35666666665433322222223345667778888887
Q ss_pred CCCCcccccccCCCCEEEEccChhHHHHHhhc
Q 016353 209 GYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK 240 (391)
Q Consensus 209 ~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~ 240 (391)
|+.- -+|.--+++.++.-++.
T Consensus 126 gIrV-----------SLFidP~~~qi~~A~~~ 146 (239)
T PRK05265 126 GIRV-----------SLFIDPDPEQIEAAAEV 146 (239)
T ss_pred CCEE-----------EEEeCCCHHHHHHHHHh
Confidence 7641 34444566666666655
No 169
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.46 E-value=47 Score=32.14 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHHHHHHcC--CeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 301 TDLVARAHALD--LQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 301 ~~~v~~~~~~G--l~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
.++++.+++++ +.|.+.++.+.+.. ..+.+.|+|+|..
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A--------------~~l~~aGaD~I~v 162 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAA--------------RDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHH--------------HHHHhcCCCEEEE
Confidence 56888999887 78888888888877 5788999999974
No 170
>PRK15452 putative protease; Provisional
Probab=31.37 E-value=3.5e+02 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHHcCCCEEEe
Q 016353 56 FPEETAAAYMRAIEEGADFIET 77 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~ 77 (391)
+|-.|+++++.|++.|||.|=+
T Consensus 8 apag~~e~l~aAi~~GADaVY~ 29 (443)
T PRK15452 8 SPAGTLKNMRYAFAYGADAVYA 29 (443)
T ss_pred EECCCHHHHHHHHHCCCCEEEE
Confidence 4667899999999999987654
No 171
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=31.02 E-value=3.7e+02 Score=28.43 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC---CchhHHHHHh
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD---FPGSLHNYQE 363 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD---~P~~l~~~~~ 363 (391)
..++..+|..|++|.+=.|.+.++. ..+.++|||++.-- .|-...++..
T Consensus 599 ~~i~~~a~~l~~~viaegVEt~~~~--------------~~l~~~g~d~~QGy~~~~P~~~~~~~~ 650 (660)
T PRK11829 599 RIISCVSDVLKVRVMAEGVETEEQR--------------QWLLEHGIQCGQGFLFSPPLPRAEFEA 650 (660)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHH--------------HHHHHcCCCEEecCcccCCCCHHHHHH
Confidence 4556678889999999999999988 68999999988775 3656655544
No 172
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.00 E-value=41 Score=30.06 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=18.2
Q ss_pred CcchhhHHHHHHHHHhhcCCcCCCC
Q 016353 2 GISSTCFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~ 26 (391)
.+....+++.+.++||+||+...+.
T Consensus 4 ~~~~~~~l~~~As~LL~aC~~~~~~ 28 (206)
T COG3017 4 MKRLLFLLLALASLLLTACTLTASR 28 (206)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCC
Confidence 3445667888899999999765543
No 173
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=30.05 E-value=46 Score=29.01 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccC
Q 016353 156 IITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFA 230 (391)
Q Consensus 156 ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~ 230 (391)
-..|+++.+++..++ ...+.||=-++..-.......-+..=++.|.+.|.+.|+.. +|+.+.+|-
T Consensus 85 ~~~L~~~a~~L~~~p-~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gv~~---------~ri~~~g~G 149 (173)
T PRK10802 85 AQMLDAHANFLRSNP-SYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSA---------DQISIVSYG 149 (173)
T ss_pred HHHHHHHHHHHHhCC-CceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCCH---------HHeEEEEec
Confidence 445777777777654 33455543332211000000011234566777777777764 456555554
No 174
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=29.96 E-value=72 Score=28.45 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..+++.++..|+.|.+=.|++.++. ..+.++|+|++.-.+
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~~~--------------~~l~~~Gi~~~QG~~ 232 (241)
T smart00052 193 QSIIELAQKLGLQVVAEGVETPEQL--------------DLLRSLGCDYGQGYL 232 (241)
T ss_pred HHHHHHHHHCCCeEEEecCCCHHHH--------------HHHHHcCCCEEeece
Confidence 5678899999999999999999988 589999999887654
No 175
>PRK15447 putative protease; Provisional
Probab=29.67 E-value=1.3e+02 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCeEEEEeecC---cccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHh
Q 016353 301 TDLVARAHALDLQVHPYTYRN---EHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~---~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
.+.++.+|++|.+|++-+.+- ++++ ..+ ..+.+.|+|+|+..++..+.-+++
T Consensus 51 ~e~v~~~~~~gkkvyva~p~i~~~~~e~----------~~l-~~~l~~~~~~v~v~d~g~l~~~~e 105 (301)
T PRK15447 51 LELAERLAAAGKEVVLSTLALVEAPSEL----------KEL-RRLVENGEFLVEANDLGAVRLLAE 105 (301)
T ss_pred HHHHHHHHHcCCEEEEEecccccCHHHH----------HHH-HHHHhcCCCEEEEeCHHHHHHHHh
Confidence 678899999999999855331 2233 233 346678999999999999876665
No 176
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.66 E-value=96 Score=26.68 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=12.4
Q ss_pred HcCCCEEEeeeEEcCCCeEEEEcC
Q 016353 69 EEGADFIETDILASKDGVLICHHD 92 (391)
Q Consensus 69 ~~Gad~vE~DV~lTkDg~~Vv~HD 92 (391)
+-++.-+|+=|.--||..-...-|
T Consensus 47 ~g~a~Pl~VrlyeLk~d~~F~~ad 70 (159)
T COG3521 47 NGEAAPLEVRLYELKDDSKFLSAD 70 (159)
T ss_pred CCCccceEEEEEEEcCcccccccc
Confidence 334445666666555544444444
No 177
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=29.63 E-value=64 Score=29.66 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 302 DLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 302 ~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
+-.+.+-+.|..|++|+-+|+-.. ++|.+.|+..|+-
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~a--------------krL~d~GcaavMP 150 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLA--------------KRLEDAGCAAVMP 150 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHH--------------HHHHHTT-SEBEE
T ss_pred HHHHHHHHCCCEEeecCCCCHHHH--------------HHHHHCCCCEEEe
Confidence 344566788999999998888876 6899999998874
No 178
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=29.45 E-value=81 Score=23.49 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.6
Q ss_pred eEEcCCCeEEEEcCC
Q 016353 79 ILASKDGVLICHHDV 93 (391)
Q Consensus 79 V~lTkDg~~Vv~HD~ 93 (391)
+-+|.||.+.+||-.
T Consensus 13 fGi~~dG~LslF~G~ 27 (75)
T PF08955_consen 13 FGISEDGVLSLFEGP 27 (75)
T ss_dssp EEEETTTEEEEBSSS
T ss_pred EEEcCCCcEEEEecC
Confidence 457899999999983
No 179
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=29.29 E-value=2.8e+02 Score=21.64 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCc-hHHHHHHHHHcCccEEEeCC---chhHHHH
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDP-YREYDYWINKIGVDGLFTDF---PGSLHNY 361 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~-~~~~~~~l~~~GVdgIiTD~---P~~l~~~ 361 (391)
.++...++..|+.|..-.+.......+..|.|.. -+++...+...++|.|+.|. |.+.+.+
T Consensus 11 ~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNL 75 (95)
T PF13167_consen 11 EELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNL 75 (95)
T ss_pred HHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 5666777788888877666555444444566655 46666667779999999996 4444444
No 180
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.29 E-value=43 Score=28.52 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHhhcCCc
Q 016353 6 TCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~ 22 (391)
.++++++++++|+||++
T Consensus 3 k~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 3 KIVLLALLALALGGCAT 19 (151)
T ss_pred hHHHHHHHHHHHhcccC
Confidence 35566666778899996
No 181
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.22 E-value=1.5e+02 Score=28.69 Aligned_cols=84 Identities=13% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHcCCeEEEEe-ecCccccccc--------------------------ccCCCch----HHHHHHHHHcCc
Q 016353 299 TPTDLVARAHALDLQVHPYT-YRNEHQFLHF--------------------------NFLQDPY----REYDYWINKIGV 347 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WT-vn~~~~~~~~--------------------------~~~~~~~----~~~~~~l~~~GV 347 (391)
.+++-++.+|+.|.+|++|. +...+...++ +++...+ ...-..+.+.|.
T Consensus 82 fs~~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGf 161 (315)
T TIGR01370 82 YSPEEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGF 161 (315)
T ss_pred CCHHHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCC
Confidence 36778889999999999985 3443332210 1111011 112345667999
Q ss_pred cEEEeCCchhHHHHHhccCCCCCCchHHHHHhhhhhh
Q 016353 348 DGLFTDFPGSLHNYQELTSPVSKDNRASKLLHKIAVL 384 (391)
Q Consensus 348 dgIiTD~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (391)
|||.=|..+....+.+. .-.....++.++..+..|
T Consensus 162 DGvfLD~lDsy~~~~~~--~~~~~~~~~~m~~~i~~I 196 (315)
T TIGR01370 162 DGVYLDLIDAFEYWAEN--GDNRPGAAAEMIAFVCEI 196 (315)
T ss_pred CeEeeccchhhhhhccc--CCcchhhHHHHHHHHHHH
Confidence 99999999888766432 222234455555555444
No 182
>PRK10175 lipoprotein; Provisional
Probab=28.62 E-value=33 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhcCCcC
Q 016353 7 CFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (391)
++++.+..++++||++-
T Consensus 3 ~~~~~~~~~~lsGCgSi 19 (75)
T PRK10175 3 LIVVSIMVTLLSGCGSI 19 (75)
T ss_pred eHHHHHHHHHhccchhh
Confidence 45667778899999983
No 183
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=1.1e+02 Score=29.63 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=36.3
Q ss_pred EecCCCCCC----CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcC
Q 016353 47 LAHRGSNGE----FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92 (391)
Q Consensus 47 iaHRG~~~~----~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD 92 (391)
=-|||+.+. -+|=--.|.+.|-.+|...+=+||-.++||..|+==.
T Consensus 237 N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN 286 (318)
T COG0189 237 NLARGGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVN 286 (318)
T ss_pred eccccccccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEe
Confidence 357777653 4566677888888899999999999999999987433
No 184
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=28.25 E-value=61 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHhhcCCcCC
Q 016353 3 ISSTCFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~ 24 (391)
|-+..+.+++++++|++|+.-.
T Consensus 3 ~~mk~~~~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 3 MVMRRFASLLLTLLLSACSALQ 24 (104)
T ss_pred hHHHHHHHHHHHHHHhhhhhcc
Confidence 3455577778999999997544
No 185
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=27.97 E-value=97 Score=30.87 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCeE---EEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 301 TDLVARAHALDLQV---HPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V---~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..-++.++++|..+ .+||..-...+ +-+.++-+.+.++|||.|+--.
T Consensus 128 ~~ai~a~kk~G~h~q~~i~YT~sPvHt~-------e~yv~~akel~~~g~DSIciKD 177 (472)
T COG5016 128 KTAIKAAKKHGAHVQGTISYTTSPVHTL-------EYYVELAKELLEMGVDSICIKD 177 (472)
T ss_pred HHHHHHHHhcCceeEEEEEeccCCcccH-------HHHHHHHHHHHHcCCCEEEeec
Confidence 45677888999755 44554333332 3356677788899999998653
No 186
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=27.95 E-value=52 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhcCCcCCCC
Q 016353 8 FIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~ 26 (391)
+.+++++++|+||++....
T Consensus 2 ~~~l~~~~llagCss~~~~ 20 (158)
T PF13798_consen 2 IPLLSLSLLLAGCSSDEDS 20 (158)
T ss_pred hHHHHHHHHHHHcCCCCcc
Confidence 5678888999999987654
No 187
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=27.81 E-value=1.1e+02 Score=23.65 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=27.8
Q ss_pred CchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCc
Q 016353 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 95 (391)
..+||+.++++++ ...||+ |.+ .|+..++++|.-.
T Consensus 15 ~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeGk 49 (95)
T PF12957_consen 15 EIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEGK 49 (95)
T ss_pred ecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCccC
Confidence 5678899999999 457888 777 7788888888663
No 188
>PRK10449 heat-inducible protein; Provisional
Probab=27.78 E-value=57 Score=27.29 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhhcCCcCCC
Q 016353 6 TCFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~ 25 (391)
.++++++++++++||++.+.
T Consensus 3 ~~~~~~~~~~~l~~C~~~~~ 22 (140)
T PRK10449 3 KVVALVALSLLMAGCVSSGK 22 (140)
T ss_pred hHHHHHHHHHHHHHhcCCCC
Confidence 45667778888899998654
No 189
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=27.65 E-value=91 Score=29.41 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCccEEEeCCchhHHHHHhccCCCCCCchHHHH---Hhhhhhh
Q 016353 336 REYDYWINKIGVDGLFTDFPGSLHNYQELTSPVSKDNRASKL---LHKIAVL 384 (391)
Q Consensus 336 ~~~~~~l~~~GVdgIiTD~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 384 (391)
..+..++.++|+|||.-|..+.. .|.+.+...+..|-+.+. +.+|..+
T Consensus 129 ~~~l~rL~d~GfdGvyLD~VD~y-~Y~~~~~~~~~~~~~k~m~~~i~~i~~~ 179 (300)
T COG2342 129 RSYLDRLIDQGFDGVYLDVVDAY-WYVEWNDRETGVNAAKKMVKFIAAIAEY 179 (300)
T ss_pred HHHHHHHHHccCceEEEeeechH-HHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 44557899999999999999988 555655555555665554 4455443
No 190
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=27.62 E-value=51 Score=29.72 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhhcCCcCCCC
Q 016353 7 CFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~ 26 (391)
.+++++++++++||+..+..
T Consensus 3 ~i~~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 3 KILLLLLLLLLTGCSTNPNE 22 (216)
T ss_pred HHHHHHHHHHHHhhcCCCcc
Confidence 44555578899999998764
No 191
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=27.56 E-value=4.8e+02 Score=23.89 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHc-CC-eEEE-EeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 299 TPTDLVARAHAL-DL-QVHP-YTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 299 ~~~~~v~~~~~~-Gl-~V~~-WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
.+.++++.+++. +. ++.+ -.+++.+++ +.+...|+|+|+.-.
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a--------------~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQA--------------RELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHH--------------HHHHHhCCCEEEECh
Confidence 568899999885 34 5444 458888887 467889999999863
No 192
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.48 E-value=1.4e+02 Score=28.02 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCch-hHHHHHh
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPG-SLHNYQE 363 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~-~l~~~~~ 363 (391)
...++.+|+.|+++.+|....+..-. ..+--...-+...++|+|-|=|++|. .+.+..+
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~~~~----~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~ 189 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKDMVR----DARYFSLATRIAAEMGAQIIKTYYVEEGFERITA 189 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCCcCc----hHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHH
Confidence 45668999999999999754333110 00011112234558999999999998 4455444
No 193
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=27.43 E-value=4.7e+02 Score=23.90 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcCCCceEEEEe
Q 016353 197 FEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLID 250 (391)
Q Consensus 197 ~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~p~~~~~l~~ 250 (391)
-+..++.++.+...++ -+-+++++|+..-+..+|+....|.+.+++
T Consensus 54 a~~~~l~ei~~~~~~G--------vdaiiIaCf~DPgl~~~Re~~~~PviGi~e 99 (230)
T COG4126 54 AAPGLLREIADGEEQG--------VDAIIIACFSDPGLAAARERAAIPVIGICE 99 (230)
T ss_pred hhhHHHHHhhcccccC--------CcEEEEEecCChHHHHHHHHhCCCceehhH
Confidence 4455566666554322 145999999999999999998888776654
No 194
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=27.38 E-value=2.6e+02 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHc-CCeEEEE-eecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 297 SQTPTDLVARAHAL-DLQVHPY-TYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 297 ~~~~~~~v~~~~~~-Gl~V~~W-Tvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
...++++++++++. ++++.+- .+.+.++. +.+.+.|+|+|++
T Consensus 161 ~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a--------------~~l~~~GAD~VVV 204 (205)
T TIGR01769 161 YPVNPETISLVKKASGIPLIVGGGIRSPEIA--------------YEIVLAGADAIVT 204 (205)
T ss_pred CCCCHHHHHHHHHhhCCCEEEeCCCCCHHHH--------------HHHHHcCCCEEEe
Confidence 34689999999877 4555444 58888887 4677889999985
No 195
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.27 E-value=1e+02 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCC---eEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 301 TDLVARAHALDL---QVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 301 ~~~v~~~~~~Gl---~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
+.+++.++++|. +|++-...-+++. ..+.++|||++++=
T Consensus 71 ~~~~~~L~~~g~~~i~vivGG~~~~~~~--------------~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 71 PALRKELDKLGRPDILVVVGGVIPPQDF--------------DELKEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCChHhH--------------HHHHHCCCCEEECC
Confidence 677888888864 4555432223333 35888999999964
No 196
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.04 E-value=5.4e+02 Score=24.29 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=32.0
Q ss_pred CHHHHHHHHHc-CCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 300 PTDLVARAHAL-DLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 300 ~~~~v~~~~~~-Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
..+.++.+++. +++|.+=.+.+.+.. +.+.+.|||+|+..
T Consensus 160 ~~~~i~~l~~~~~~pvivK~v~s~~~a--------------~~a~~~G~d~I~v~ 200 (299)
T cd02809 160 TWDDLAWLRSQWKGPLILKGILTPEDA--------------LRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHhcCCCEEEeecCCHHHH--------------HHHHHCCCCEEEEc
Confidence 35788999887 888888877776665 57889999999764
No 197
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=26.79 E-value=72 Score=29.68 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 302 DLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 302 ~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
+-.+.+-+.|..|++|+-+|+-.. ++|.+.|+..|+-
T Consensus 128 ~Aae~Lv~eGF~VlPY~~~D~v~a--------------~rLed~Gc~aVMP 164 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYINADPMLA--------------KHLEDIGCATVMP 164 (267)
T ss_pred HHHHHHHHCCCEEeecCCCCHHHH--------------HHHHHcCCeEEee
Confidence 344566678999999998888766 6889999988873
No 198
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=26.70 E-value=81 Score=29.00 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC---chhHHH
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF---PGSLHN 360 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~---P~~l~~ 360 (391)
..++..+|+.|..|.+=.|.+.+++ ..+.++|+|.+.--+ |..+.+
T Consensus 199 ~~lv~~a~~~~~~viAeGVEt~eq~--------------~~l~~lG~d~~QGy~~~~P~~~~~ 247 (255)
T PRK11596 199 SQLLHLMNRYCRGVIVEGVETPEEW--------------RDVQRSPAFAAQGYFLSRPAPFET 247 (255)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHH--------------HHHHHCCCCEeecCccCCCCCHHH
Confidence 5668999999999999999999988 689999999776553 554443
No 199
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=26.68 E-value=2.5e+02 Score=26.68 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=33.7
Q ss_pred cccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHHHHHHHHc---CCCCcccccccCCCCEEEEccCh
Q 016353 155 PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKY---GYKGAYMSKEWLKQPIFIQSFAP 231 (391)
Q Consensus 155 ~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~~~~~~~~~~~~~vii~Sf~~ 231 (391)
+...|.++++.+.+.+..+.+.++..... +.+.++++++++ |+.. | =.+=++|++.
T Consensus 92 ~~~~L~~l~~~i~~~~~~~~isi~trpd~-------------l~~e~l~~L~~l~~~G~~~------~--i~lGlQS~~d 150 (302)
T TIGR01212 92 PVEVLKEMYEQALSYDDVVGLSVGTRPDC-------------VPDEVLDLLAEYVERGYEV------W--VELGLQTAHD 150 (302)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecCCc-------------CCHHHHHHHHHhhhCCceE------E--EEEccCcCCH
Confidence 34456777776665444456666654322 223444454443 4310 0 0133678888
Q ss_pred hHHHHHhh
Q 016353 232 TSLVYISN 239 (391)
Q Consensus 232 ~~l~~l~~ 239 (391)
++|+.+.+
T Consensus 151 ~~L~~i~R 158 (302)
T TIGR01212 151 KTLKKINR 158 (302)
T ss_pred HHHHHHcC
Confidence 88877655
No 200
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=26.18 E-value=2e+02 Score=28.44 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhhcCCcCC
Q 016353 6 TCFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~ 24 (391)
+++.+++++++|+||++..
T Consensus 6 ~~~~~~~~~~~l~gCg~~~ 24 (437)
T TIGR03850 6 LALALAMAASSLAGCGSGT 24 (437)
T ss_pred HHHHHHHHHHHHhhccCCC
Confidence 3444445556789998654
No 201
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=26.09 E-value=2.2e+02 Score=30.56 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCcccccceeccc
Q 016353 50 RGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDF 129 (391)
Q Consensus 50 RG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dl 129 (391)
||++ -|+--.+||++|.+. ||+|.|+=-.+++-..-+. .+. |+... -.+..|
T Consensus 361 rGGH--D~~ki~aA~~~A~~~-------------kg~PtvilA~TIKGyglg~---~~e---------g~n~a-Hq~kkm 412 (887)
T COG2609 361 RGGH--DPEKVYAAFKKAQEH-------------KGRPTVILAKTIKGYGLGE---AAE---------GKNIA-HQVKKM 412 (887)
T ss_pred cCCC--CHHHHHHHHHHHhcC-------------CCCceEEEEeeeccccCch---hhc---------ccchh-hhhhcC
Confidence 7765 588899999999863 4677666555554322211 111 11111 135567
Q ss_pred CHHHHccccccccc------------------------------------cCCccccCCCccccCHHHHHHHHHhcCCce
Q 016353 130 TLEELKTLRAKQRY------------------------------------SFRDQQYNGKFPIITFEEYISIALDAQRVV 173 (391)
Q Consensus 130 t~~EL~~l~~~~~~------------------------------------~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~ 173 (391)
|.++|+.++-+... +.|-..+.+..++|.|+++...++..+.
T Consensus 413 ~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~-- 490 (887)
T COG2609 413 TPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGE-- 490 (887)
T ss_pred CHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCc--
Confidence 77777766554321 1122334455689999999998876552
Q ss_pred eEEEeecCchhccccccccCcccHHHHHHHHHHHcCCC
Q 016353 174 GIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211 (391)
Q Consensus 174 ~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 211 (391)
|+-+ .-.++..+-.+++...+.
T Consensus 491 ----~iST------------tmAfvr~l~~llkdk~ig 512 (887)
T COG2609 491 ----EIST------------TMAFVRILNELLKDKEIG 512 (887)
T ss_pred ----cchh------------HHHHHHHHHHHHhccccC
Confidence 3322 224666666777765554
No 202
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.94 E-value=30 Score=29.98 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=9.1
Q ss_pred HHHcCccEEEeCCchhHHHH
Q 016353 342 INKIGVDGLFTDFPGSLHNY 361 (391)
Q Consensus 342 l~~~GVdgIiTD~P~~l~~~ 361 (391)
|.+.|+.||++|--.++..+
T Consensus 23 L~~~Gikgvi~DlDNTLv~w 42 (175)
T COG2179 23 LKAHGIKGVILDLDNTLVPW 42 (175)
T ss_pred HHHcCCcEEEEeccCceecc
Confidence 44445555555544444333
No 203
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=25.93 E-value=74 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHcCCeEEEEe
Q 016353 299 TPTDLVARAHALDLQVHPYT 318 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WT 318 (391)
.+++.|+.+|+.|.+|++|.
T Consensus 37 ~~~~~I~~L~~~G~~vicY~ 56 (74)
T PF03537_consen 37 FSKEEIARLKAQGKKVICYF 56 (74)
T ss_dssp --HHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHCCCEEEEEE
Confidence 47899999999999999995
No 204
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.84 E-value=2.6e+02 Score=25.07 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 299 TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
.++++++.++++|+.+..-.. ++.++ ....++|++.|=- +|
T Consensus 85 ~~~~vi~~a~~~~i~~iPG~~-TptEi--------------~~A~~~Ga~~vK~-FP 125 (201)
T PRK06015 85 TTQELLAAANDSDVPLLPGAA-TPSEV--------------MALREEGYTVLKF-FP 125 (201)
T ss_pred CCHHHHHHHHHcCCCEeCCCC-CHHHH--------------HHHHHCCCCEEEE-CC
Confidence 479999999999998777554 34444 2577889877543 44
No 205
>PF06924 DUF1281: Protein of unknown function (DUF1281); InterPro: IPR009694 This family consists of several hypothetical enterobacterial proteins of around 170 residues in length. Members of this family are found in Escherichia coli, Salmonella typhimurium and Shigella species. The function of this family is unknown.; PDB: 2IJR_A.
Probab=25.83 E-value=21 Score=29.55 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=25.5
Q ss_pred HHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHH
Q 016353 12 LFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIE 69 (391)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~ 69 (391)
-+-+.|+||+.-=- +. +...-.+-|.+++| |-+...|+|. ||+.=+.
T Consensus 32 si~LFLAGcAGiLk--P~------~~~~y~pyP~L~~~-G~G~~s~~N~--AF~~Wl~ 78 (134)
T PF06924_consen 32 SIQLFLAGCAGILK--PT------KPISYPPYPALVAH-GTGASSPANQ--AFTQWLG 78 (134)
T ss_dssp HHHHHHHHHHTSS----S------S----TT-GGGGTT-----S-HHHH--HHHHHHH
T ss_pred HHHHHHhccccccc--cc------CCcccCCChHHhcc-CCCCCCcccc--cHHHHHH
Confidence 45678899997311 01 11223455778899 4445689998 9988775
No 206
>PRK10722 hypothetical protein; Provisional
Probab=25.68 E-value=66 Score=29.57 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHH
Q 016353 5 STCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMR 66 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~ 66 (391)
...++.+++.++|+||+...+... .+.......||+-+.=|+.
T Consensus 15 ~~~~~~~l~~llL~gC~~~~~~~~-------------------~~~~~~~~~pe~~~~Dyr~ 57 (247)
T PRK10722 15 RRLWLSGLPCLLLAGCVQNANKPA-------------------ASTAAEEKIPEYQLADYRS 57 (247)
T ss_pred HHHHHHHHHHHHHHHccCCCCCcc-------------------cccccccCCCcchhhhhhh
Confidence 445666788899999998765321 1222333578888776654
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.64 E-value=1e+02 Score=30.08 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=34.2
Q ss_pred CHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC-chhHHHHHh
Q 016353 300 PTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF-PGSLHNYQE 363 (391)
Q Consensus 300 ~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~-P~~l~~~~~ 363 (391)
-.--+|.++..|..|.+-|.++... +.+.++|+|-+++-. ++.+..+.+
T Consensus 179 Gh~avQ~Aka~ga~Via~~~~~~K~---------------e~a~~lGAd~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 179 GHMAVQYAKAMGAEVIAITRSEEKL---------------ELAKKLGADHVINSSDSDALEAVKE 228 (339)
T ss_pred HHHHHHHHHHcCCeEEEEeCChHHH---------------HHHHHhCCcEEEEcCCchhhHHhHh
Confidence 4567788888888888888776653 246778888888743 555555443
No 208
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=25.45 E-value=95 Score=28.60 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
...++.+|+.|+.|....--+++++ +...+.|+|.|--..
T Consensus 114 ~~~i~~L~~~gIrvSLFiDP~~~qi--------------~~A~~~Gad~VELhT 153 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLFIDPDPEQI--------------EAAKELGADRVELHT 153 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHH--------------HHHHHTT-SEEEEET
T ss_pred HHHHHHHHhCCCEEEEEeCCCHHHH--------------HHHHHcCCCEEEEeh
Confidence 6789999999999999887677766 578889999987664
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.39 E-value=71 Score=29.40 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 016353 5 STCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~ 22 (391)
..++++++++++++||++
T Consensus 5 ~~~~~~~~~~~~lsgCs~ 22 (243)
T PRK10866 5 KYLVAAATLSLFLAGCSG 22 (243)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 334455556788999975
No 210
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=25.25 E-value=5.6e+02 Score=23.81 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHc-CCeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 298 QTPTDLVARAHAL-DLQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 298 ~~~~~~v~~~~~~-Gl~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
..++++++.+++. +++|.+-. +.++++. ..++++|+|||..+
T Consensus 161 i~~~~~I~~I~e~~~vpVI~egGI~tpeda--------------~~AmelGAdgVlV~ 204 (248)
T cd04728 161 LLNPYNLRIIIERADVPVIVDAGIGTPSDA--------------AQAMELGADAVLLN 204 (248)
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCHHHH--------------HHHHHcCCCEEEEC
Confidence 3468898988885 67777765 8888887 57889999999876
No 211
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=25.18 E-value=59 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.4
Q ss_pred eEEcCCCeEEEEcCCCcccccccC
Q 016353 79 ILASKDGVLICHHDVFLDDTTNIA 102 (391)
Q Consensus 79 V~lTkDg~~Vv~HD~~l~r~t~~~ 102 (391)
+.-|+||+-|.+|.+...|+.+.-
T Consensus 43 ~meTkDG~kI~m~gdEV~RL~~~l 66 (73)
T PF11525_consen 43 VMETKDGQKITMHGDEVARLDSLL 66 (73)
T ss_dssp EEEBTTS-EEEEETTEEEEECCCH
T ss_pred EEEccCCCEEEecchHHHhHHHHH
Confidence 567999999999999999986643
No 212
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.15 E-value=65 Score=28.45 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHHHcCCCEEEee
Q 016353 56 FPEETAAAYMRAIEEGADFIETD 78 (391)
Q Consensus 56 ~pENTl~Af~~A~~~Gad~vE~D 78 (391)
-++++....+.+.+.|+|.||+|
T Consensus 9 ~~~~~~~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 9 DFARLGEEVKAVEEAGADWIHVD 31 (210)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 46899999999999999999998
No 213
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=24.91 E-value=42 Score=28.31 Aligned_cols=15 Identities=20% Similarity=0.738 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhcCCc
Q 016353 8 FIPLLFLSLIAGCAA 22 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~ 22 (391)
|+++.+++||+||++
T Consensus 6 l~~~~~~alLtGCsa 20 (144)
T TIGR02747 6 LLLIACVAFLTGCSA 20 (144)
T ss_pred hhHHHHHHHhhcccC
Confidence 333433333999966
No 214
>PRK13792 lysozyme inhibitor; Provisional
Probab=24.90 E-value=52 Score=27.16 Aligned_cols=20 Identities=5% Similarity=0.100 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhhcCCcCCCC
Q 016353 7 CFIPLLFLSLIAGCAARPLY 26 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~ 26 (391)
++.++..+++|+||++....
T Consensus 6 ~~ll~~~~~lLsaCs~~~~~ 25 (127)
T PRK13792 6 WLLLAAVPVVLVACGGSDDD 25 (127)
T ss_pred HHHHHHHHhheecccCCCCC
Confidence 34444555669999987653
No 215
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=24.38 E-value=1.1e+02 Score=27.25 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
..++..++..|+.|.+=.|++.++. ..+.++|+|.+.-++
T Consensus 192 ~~l~~~~~~~~~~via~gVe~~~~~--------------~~~~~~gi~~~QG~~ 231 (240)
T cd01948 192 RAIIALAHSLGLKVVAEGVETEEQL--------------ELLRELGCDYVQGYL 231 (240)
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHH--------------HHHHHcCCCeeeece
Confidence 5678889999999999999999988 579999999887664
No 216
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=24.28 E-value=75 Score=28.07 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhhcCCcC
Q 016353 7 CFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (391)
++++++++++|+||+..
T Consensus 5 ~~~~~~~al~l~gC~~~ 21 (189)
T TIGR02722 5 IIFVALLALLLSGCVSQ 21 (189)
T ss_pred HHHHHHHHHHHccCCCC
Confidence 46667788899999774
No 217
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=76 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcC
Q 016353 58 EETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92 (391)
Q Consensus 58 ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD 92 (391)
--|.+.|+.+...| +|-+-.-++.||+.|+--|
T Consensus 48 RDs~~~Fd~vk~~g--yiGIPall~~d~~vVl~~D 80 (85)
T COG4545 48 RDSRPEFDEVKSNG--YIGIPALLTDDGKVVLGDD 80 (85)
T ss_pred hccchhHHhhhhcC--cccceEEEeCCCcEEEech
Confidence 46788899888887 5666778999999998744
No 218
>PRK00208 thiG thiazole synthase; Reviewed
Probab=23.84 E-value=5.9e+02 Score=23.65 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHc-CCeEEEEe-ecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 299 TPTDLVARAHAL-DLQVHPYT-YRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 299 ~~~~~v~~~~~~-Gl~V~~WT-vn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
.++++++.+++. +++|.+-. +.++++. ..++++|+|||..+
T Consensus 162 ~~~~~i~~i~e~~~vpVIveaGI~tpeda--------------~~AmelGAdgVlV~ 204 (250)
T PRK00208 162 LNPYNLRIIIEQADVPVIVDAGIGTPSDA--------------AQAMELGADAVLLN 204 (250)
T ss_pred CCHHHHHHHHHhcCCeEEEeCCCCCHHHH--------------HHHHHcCCCEEEEC
Confidence 368888888884 77777664 7888877 57889999999876
No 219
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=23.66 E-value=54 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhcC
Q 016353 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT 241 (391)
Q Consensus 196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~~ 241 (391)
++-..+.+.+++..-. -+-++-|-|++...+++.+.
T Consensus 98 ~iK~~Va~~Vk~~dp~----------~~~VyVsaDpd~~~Ri~~~~ 133 (158)
T TIGR02898 98 ELKEKVAETVKSTDNR----------IANVYVSADPDTVERIRRYG 133 (158)
T ss_pred HHHHHHHHHHHhhCCC----------cceEEEEcCHHHHHHHHHHH
Confidence 4455666677762211 12344467888888887763
No 220
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=23.48 E-value=66 Score=22.77 Aligned_cols=17 Identities=18% Similarity=0.467 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhhcCCc
Q 016353 6 TCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~ 22 (391)
.++.+++.+++++||.-
T Consensus 2 ~l~~~~~~~~~l~gCtP 18 (59)
T PF13617_consen 2 PLLLLLALALALTGCTP 18 (59)
T ss_pred hhHHHHHHHHHHccCCC
Confidence 35677888888999974
No 221
>PRK11616 hypothetical protein; Provisional
Probab=23.08 E-value=61 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhcCCc
Q 016353 6 TCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~ 22 (391)
..+++.+.+++++||++
T Consensus 6 ~~~~~~~~~llLsGCgS 22 (109)
T PRK11616 6 LAFMICSGMLLLSGCSS 22 (109)
T ss_pred HHHHHHHHHHHhcccHh
Confidence 34456667889999998
No 222
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=23.03 E-value=2.5e+02 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 297 SQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 297 ~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
....++++++..+.-..++.-.+.++++. +++.+.|+|.|+|-.
T Consensus 178 ~Pv~~e~v~~v~~~~~LivGGGIrs~E~A--------------~~~a~agAD~IVtG~ 221 (240)
T COG1646 178 DPVPVEMVSRVLSDTPLIVGGGIRSPEQA--------------REMAEAGADTIVTGT 221 (240)
T ss_pred CCcCHHHHHHhhccceEEEcCCcCCHHHH--------------HHHHHcCCCEEEECc
Confidence 34678999888887756666678999887 578888999999963
No 223
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.02 E-value=1.2e+02 Score=24.22 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCch-hHHHHHhccC
Q 016353 303 LVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPG-SLHNYQELTS 366 (391)
Q Consensus 303 ~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~-~l~~~~~~~~ 366 (391)
.++.++..|..|.+=+.++. .. +.+.++|++.++..... ...++.+..+
T Consensus 6 a~q~ak~~G~~vi~~~~~~~-k~--------------~~~~~~Ga~~~~~~~~~~~~~~i~~~~~ 55 (130)
T PF00107_consen 6 AIQLAKAMGAKVIATDRSEE-KL--------------ELAKELGADHVIDYSDDDFVEQIRELTG 55 (130)
T ss_dssp HHHHHHHTTSEEEEEESSHH-HH--------------HHHHHTTESEEEETTTSSHHHHHHHHTT
T ss_pred HHHHHHHcCCEEEEEECCHH-HH--------------HHHHhhcccccccccccccccccccccc
Confidence 56777888865555554332 22 45777888888877554 4444444443
No 224
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=23.02 E-value=65 Score=21.92 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcCCcCCC
Q 016353 8 FIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~ 25 (391)
++++++.+.|+||..++-
T Consensus 3 Y~lL~l~l~La~CqT~D~ 20 (55)
T PRK13859 3 YCLLCLALALAGCQTNDT 20 (55)
T ss_pred hhHHHHHHHHHhccccCc
Confidence 467778888999997764
No 225
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=22.82 E-value=49 Score=30.36 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCcchhhHH-HHHHHHHhhcCCcC
Q 016353 1 MGISSTCFI-PLLFLSLIAGCAAR 23 (391)
Q Consensus 1 ~~~~~~~~~-~~~~~~l~~~~~~~ 23 (391)
|.+....++ +++.+++|+||++-
T Consensus 1 M~~~~~~~~~~~~~~l~lsGC~a~ 24 (243)
T PRK13731 1 MKTKKLMMVALVSSTLALSGCGAM 24 (243)
T ss_pred CchhHHHHHHHHHHHHhhcCchhh
Confidence 566666554 57888899999973
No 226
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=22.62 E-value=65 Score=27.21 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhhcCCcC
Q 016353 6 TCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~ 23 (391)
.++++++++++|+||.+.
T Consensus 3 k~~~~~~~al~LaGCaT~ 20 (145)
T PRK13835 3 RLLAACILALLLSGCQTL 20 (145)
T ss_pred hHHHHHHHHHHHhccccc
Confidence 456677778899999984
No 227
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.56 E-value=2.2e+02 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=30.8
Q ss_pred CHHHHHHHHHcCC-eEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHH
Q 016353 300 PTDLVARAHALDL-QVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLH 359 (391)
Q Consensus 300 ~~~~v~~~~~~Gl-~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~ 359 (391)
-.++++.+++.+. .+..|.-....... .+.+...|+|+++++..+.+.
T Consensus 67 ~~~~i~~l~~~~~~~~~i~vGG~~~~~~------------~~~~~~~G~D~~~~~~~~~~~ 115 (119)
T cd02067 67 MKEVIEELKEAGLDDIPVLVGGAIVTRD------------FKFLKEIGVDAYFGPATEAVE 115 (119)
T ss_pred HHHHHHHHHHcCCCCCeEEEECCCCChh------------HHHHHHcCCeEEECCHHHHHH
Confidence 3778888888865 45555443332210 035778999999998775443
No 228
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.49 E-value=1.9e+02 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEe
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFT 352 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiT 352 (391)
..+-+.++++|..+..-..++..+. +++-+.+.+.+|||||-
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~~~~~----------e~~i~~l~~~~vDGiI~ 62 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGDDEEK----------EEYIELLLQRRVDGIIL 62 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTHHH----------HHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHcCCEEEEecCCCchHH----------HHHHHHHHhcCCCEEEE
Confidence 4455777888887776555544433 24445677788888874
No 229
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=22.40 E-value=1.2e+02 Score=21.14 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=14.1
Q ss_pred HHHHHHHHhhcCCcCCCCCCC
Q 016353 9 IPLLFLSLIAGCAARPLYPLP 29 (391)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~ 29 (391)
.++...+.|+||+...+.-.|
T Consensus 9 ~ala~l~sLA~CG~KGPLy~P 29 (58)
T COG5567 9 LALATLFSLAGCGLKGPLYFP 29 (58)
T ss_pred HHHHHHHHHHhcccCCCccCC
Confidence 333344488999998876655
No 230
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.36 E-value=4.3e+02 Score=25.98 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHcCCeEEEEe-ecCcccc
Q 016353 299 TPTDLVARAHALDLQVHPYT-YRNEHQF 325 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WT-vn~~~~~ 325 (391)
+++.+++.+.+.+.+|+.-| +|.+.++
T Consensus 207 It~~L~~~l~~~~~~v~~~tH~NHp~Ei 234 (369)
T COG1509 207 ITDELCEILGKSRKPVWLVTHFNHPNEI 234 (369)
T ss_pred ccHHHHHHHhccCceEEEEcccCChhhc
Confidence 35566666655555655555 5555555
No 231
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=21.99 E-value=53 Score=24.49 Aligned_cols=17 Identities=29% Similarity=0.725 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcCCcCC
Q 016353 8 FIPLLFLSLIAGCAARP 24 (391)
Q Consensus 8 ~~~~~~~~l~~~~~~~~ 24 (391)
++.+...++++||++--
T Consensus 5 ~l~l~v~lllSGC~SV~ 21 (80)
T COG5645 5 LLSLMVLLLLSGCGSVI 21 (80)
T ss_pred hHHHHHHHHhCccceeE
Confidence 33444447899999843
No 232
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.45 E-value=6e+02 Score=22.84 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCc
Q 016353 299 TPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355 (391)
Q Consensus 299 ~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P 355 (391)
.++++++.++++|+.+..-+. ++.++ ....+.|+|.|-- ||
T Consensus 97 ~~~~v~~~~~~~~i~~iPG~~-T~~E~--------------~~A~~~Gad~vkl-FP 137 (213)
T PRK06552 97 FNRETAKICNLYQIPYLPGCM-TVTEI--------------VTALEAGSEIVKL-FP 137 (213)
T ss_pred CCHHHHHHHHHcCCCEECCcC-CHHHH--------------HHHHHcCCCEEEE-CC
Confidence 479999999999999888665 45555 3577899999987 55
No 233
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.40 E-value=81 Score=28.93 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEE
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLF 351 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIi 351 (391)
-+-.+.+-+.|..|.+||-+|+-.. ++|.+.|+..|+
T Consensus 120 l~Aae~Lv~eGF~VlPY~~dD~v~a--------------rrLee~GcaavM 156 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTDDPVLA--------------RRLEEAGCAAVM 156 (262)
T ss_pred HHHHHHHHhCCCEEeeccCCCHHHH--------------HHHHhcCceEec
Confidence 3445566677899999988877765 578888888776
No 234
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.35 E-value=64 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhcCCcCCC
Q 016353 7 CFIPLLFLSLIAGCAARPL 25 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~ 25 (391)
.+.+..++++|+||++-+.
T Consensus 10 ~~l~~~laflLsgC~tiPk 28 (191)
T COG3065 10 GALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred HHHHHHHHHHHhhcccCCh
Confidence 3444556788999998653
No 235
>PRK11530 hypothetical protein; Provisional
Probab=21.11 E-value=77 Score=27.57 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=16.4
Q ss_pred CCcchhhHHHHHHHHHhhcCCcCC
Q 016353 1 MGISSTCFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~ 24 (391)
|-+.+..+.++..+++|+||+.++
T Consensus 1 M~~~~~~~~~l~~l~lLagCa~q~ 24 (183)
T PRK11530 1 MTTRYLRLLLLGSLLLLAGCAQQS 24 (183)
T ss_pred CceeehHHHHHHHHHHHhccCCch
Confidence 444555566667778999996654
No 236
>PF15240 Pro-rich: Proline-rich
Probab=21.03 E-value=61 Score=28.40 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhhcCCcC
Q 016353 6 TCFIPLLFLSLIAGCAAR 23 (391)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~ 23 (391)
||||||.++||+.+.+.+
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 467777777666666644
No 237
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=20.91 E-value=78 Score=25.39 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 016353 5 STCFIPLLFLSLIAGCAA 22 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~ 22 (391)
..++.+++++++++||+.
T Consensus 3 ~~~~~~~~~~l~lagCS~ 20 (109)
T PRK11251 3 AGILSAAAVLTMLAGCTA 20 (109)
T ss_pred hHHHHHHHHHHHHhhCcc
Confidence 345666677788899974
No 238
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=20.78 E-value=4.1e+02 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCC
Q 016353 294 NNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDF 354 (391)
Q Consensus 294 ~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~ 354 (391)
.+|. ++...++.+.+.|.. .+.|++.--... +++ .++.+.|+|-||||+
T Consensus 111 eGYG-l~~~~i~~~~~~~~~-LiItvD~Gi~~~---------e~i-~~a~~~gidvIVtDH 159 (575)
T PRK11070 111 DGYG-LSPEVVDQAHARGAQ-LIVTVDNGISSH---------AGV-AHAHALGIPVLVTDH 159 (575)
T ss_pred CCCC-CCHHHHHHHHhcCCC-EEEEEcCCcCCH---------HHH-HHHHHCCCCEEEECC
Confidence 4454 588999999888865 456665543221 222 357889999999996
No 239
>PF06474 MLTD_N: MltD lipid attachment motif; InterPro: IPR010511 This entry represents the MltD lipid attachment domain. It is a short N-terminal domain found in membrane-bound lytic murein transglycosylase D (Mltd).
Probab=20.71 E-value=88 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcCCc
Q 016353 9 IPLLFLSLIAGCAA 22 (391)
Q Consensus 9 ~~~~~~~l~~~~~~ 22 (391)
..+.+..+++||.+
T Consensus 21 ~~l~l~a~l~GCQS 34 (34)
T PF06474_consen 21 SVLALGALLVGCQS 34 (34)
T ss_pred HHHHHHHHHccccC
Confidence 34455577889964
No 240
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.66 E-value=1.4e+02 Score=27.47 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
...++.+|+.|+.|-.+.--+++++ ....+.|+|.|--.
T Consensus 113 ~~~i~~l~~~gI~VSLFiDP~~~qi--------------~~A~~~GAd~VELh 151 (237)
T TIGR00559 113 CELVKRFHAAGIEVSLFIDADKDQI--------------SAAAEVGADRIEIH 151 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHhCcCEEEEe
Confidence 5788999999999988865555555 56788999887543
No 241
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.34 E-value=1.4e+02 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeC
Q 016353 301 TDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTD 353 (391)
Q Consensus 301 ~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD 353 (391)
...++.+|+.|+.|....--+++++ ....+.|+|.|--.
T Consensus 113 ~~~i~~l~~~gI~VSLFiDPd~~qi--------------~~A~~~GAd~VELh 151 (234)
T cd00003 113 KPIIERLKDAGIRVSLFIDPDPEQI--------------EAAKEVGADRVELH 151 (234)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHH--------------HHHHHhCcCEEEEe
Confidence 6788999999999988876666666 56788999987543
No 242
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=20.24 E-value=48 Score=29.80 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhhcCCcCC
Q 016353 7 CFIPLLFLSLIAGCAARP 24 (391)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~ 24 (391)
++++++++++|+||+.-.
T Consensus 1 l~lllll~lLLsGCVr~~ 18 (209)
T PF11353_consen 1 LALLLLLTLLLSGCVRVD 18 (209)
T ss_pred CcHHHHHHHHhcceEEEE
Confidence 467888999999999643
Done!