Query 016355
Match_columns 391
No_of_seqs 389 out of 1595
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 4.1E-20 1.4E-24 131.6 2.0 52 242-293 4-59 (60)
2 1wim_A KIAA0161 protein; ring 99.7 6.1E-17 2.1E-21 127.2 7.4 86 72-157 2-91 (94)
3 2ct7_A Ring finger protein 31; 99.3 7.8E-14 2.7E-18 107.3 -2.7 73 140-226 3-79 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.2 2.5E-13 8.4E-18 102.8 -2.7 70 138-220 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 98.8 1E-10 3.5E-15 97.0 -4.3 117 73-257 5-126 (133)
6 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.6E-14 93.1 3.6 105 73-203 16-120 (170)
7 1rmd_A RAG1; V(D)J recombinati 98.5 1E-07 3.5E-12 77.1 5.0 81 75-176 23-103 (116)
8 2ct2_A Tripartite motif protei 98.5 1.5E-07 5.2E-12 71.9 5.2 59 72-136 12-72 (88)
9 2ecv_A Tripartite motif-contai 98.4 1.4E-07 4.8E-12 71.5 4.6 58 72-134 16-73 (85)
10 2egp_A Tripartite motif-contai 98.4 2.7E-08 9.1E-13 74.6 0.4 60 72-135 9-68 (79)
11 1jm7_A BRCA1, breast cancer ty 98.4 1.7E-07 5.8E-12 75.1 5.2 70 75-152 21-91 (112)
12 2ecw_A Tripartite motif-contai 98.4 2.3E-07 8E-12 70.2 5.5 58 72-134 16-73 (85)
13 3hct_A TNF receptor-associated 98.4 3.3E-07 1.1E-11 74.4 6.6 83 73-177 16-98 (118)
14 2ecy_A TNF receptor-associated 98.4 2.3E-07 7.8E-12 67.1 4.2 52 72-133 12-63 (66)
15 2djb_A Polycomb group ring fin 98.4 2.8E-07 9.4E-12 67.9 4.5 53 71-134 11-64 (72)
16 2ecm_A Ring finger and CHY zin 98.4 3.4E-07 1.1E-11 63.4 4.6 50 73-131 3-54 (55)
17 2ysl_A Tripartite motif-contai 98.3 1.3E-07 4.3E-12 69.8 2.0 54 72-133 17-70 (73)
18 2ysj_A Tripartite motif-contai 98.3 6.1E-07 2.1E-11 64.1 5.5 46 72-123 17-62 (63)
19 1g25_A CDK-activating kinase a 98.3 2.1E-07 7E-12 67.1 2.0 55 75-137 3-60 (65)
20 2kiz_A E3 ubiquitin-protein li 98.3 1.4E-06 4.7E-11 63.4 6.4 52 71-131 10-62 (69)
21 2d8t_A Dactylidin, ring finger 98.3 3.5E-07 1.2E-11 67.1 2.6 55 72-137 12-66 (71)
22 3ztg_A E3 ubiquitin-protein li 98.3 6E-07 2.1E-11 69.3 4.0 50 72-130 10-60 (92)
23 1e4u_A Transcriptional repress 98.2 7.1E-07 2.4E-11 66.8 4.1 54 72-133 8-63 (78)
24 1t1h_A Gspef-atpub14, armadill 98.2 6.1E-07 2.1E-11 67.0 3.6 52 73-134 6-57 (78)
25 2xeu_A Ring finger protein 4; 98.2 2.3E-07 7.8E-12 66.3 1.0 54 74-136 2-60 (64)
26 2csy_A Zinc finger protein 183 98.2 1.7E-06 5.9E-11 65.0 5.9 50 71-131 11-60 (81)
27 2yur_A Retinoblastoma-binding 98.2 1.6E-06 5.6E-11 64.0 5.3 51 71-130 11-62 (74)
28 2ea6_A Ring finger protein 4; 98.2 1E-06 3.5E-11 63.9 3.9 52 71-131 11-67 (69)
29 3knv_A TNF receptor-associated 98.2 7.2E-08 2.5E-12 80.9 -2.7 91 73-176 29-119 (141)
30 3lrq_A E3 ubiquitin-protein li 98.2 1.4E-06 4.7E-11 68.5 4.8 53 74-136 21-74 (100)
31 2ep4_A Ring finger protein 24; 98.2 2.3E-06 7.9E-11 63.1 5.5 52 71-131 11-63 (74)
32 2ecj_A Tripartite motif-contai 98.2 1.7E-06 5.9E-11 60.4 4.4 46 72-123 12-57 (58)
33 3ng2_A RNF4, snurf, ring finge 98.2 3.6E-07 1.2E-11 66.8 0.8 55 73-136 8-67 (71)
34 3l11_A E3 ubiquitin-protein li 98.1 9E-07 3.1E-11 71.3 2.9 51 72-132 12-62 (115)
35 2ect_A Ring finger protein 126 98.1 1.5E-06 5.1E-11 64.8 3.4 54 71-133 11-65 (78)
36 2y43_A E3 ubiquitin-protein li 98.1 1.4E-06 4.7E-11 68.3 3.0 49 75-134 22-71 (99)
37 3fl2_A E3 ubiquitin-protein li 98.1 2.5E-06 8.4E-11 69.7 4.4 49 74-132 51-99 (124)
38 1x4j_A Ring finger protein 38; 98.1 2.3E-06 7.7E-11 63.4 3.7 51 72-131 20-71 (75)
39 1bor_A Transcription factor PM 98.0 1E-06 3.5E-11 61.5 1.2 46 72-131 3-48 (56)
40 2yu4_A E3 SUMO-protein ligase 98.0 5E-06 1.7E-10 64.5 5.3 59 73-134 5-65 (94)
41 1iym_A EL5; ring-H2 finger, ub 98.0 3.8E-06 1.3E-10 58.0 3.3 49 74-131 4-54 (55)
42 2l0b_A E3 ubiquitin-protein li 98.0 5.7E-06 2E-10 63.7 4.2 51 72-131 37-88 (91)
43 4ayc_A E3 ubiquitin-protein li 98.0 3E-06 1E-10 70.6 2.8 46 75-131 53-98 (138)
44 2ckl_A Polycomb group ring fin 97.9 3.8E-06 1.3E-10 66.8 2.8 48 74-132 14-62 (108)
45 2kr4_A Ubiquitin conjugation f 97.9 1.1E-05 3.8E-10 61.3 5.1 51 73-134 12-62 (85)
46 2ecn_A Ring finger protein 141 97.9 1.9E-06 6.4E-11 62.8 0.4 49 71-131 11-59 (70)
47 1z6u_A NP95-like ring finger p 97.9 1E-05 3.5E-10 68.4 4.7 49 75-133 78-126 (150)
48 1v87_A Deltex protein 2; ring- 97.9 1.5E-05 5E-10 64.0 5.4 53 75-131 25-93 (114)
49 1chc_A Equine herpes virus-1 r 97.8 1.3E-05 4.3E-10 57.9 3.9 48 74-131 4-51 (68)
50 3htk_C E3 SUMO-protein ligase 97.8 8E-06 2.7E-10 74.4 3.2 56 73-135 179-235 (267)
51 1jm7_B BARD1, BRCA1-associated 97.8 1.7E-06 5.9E-11 70.0 -1.2 46 74-132 21-67 (117)
52 2ct7_A Ring finger protein 31; 97.8 7.3E-06 2.5E-10 62.5 1.6 47 244-290 25-72 (86)
53 2ckl_B Ubiquitin ligase protei 97.7 3E-05 1E-09 66.5 4.2 48 74-131 53-101 (165)
54 2ecl_A Ring-box protein 2; RNF 97.5 4.8E-05 1.7E-09 57.1 3.3 50 74-132 14-76 (81)
55 1wgm_A Ubiquitin conjugation f 97.5 0.0001 3.5E-09 57.4 5.2 50 73-133 20-70 (98)
56 2kre_A Ubiquitin conjugation f 97.5 2.6E-05 9E-10 61.1 1.7 50 73-133 27-76 (100)
57 4ic3_A E3 ubiquitin-protein li 97.5 4.2E-05 1.4E-09 56.4 2.3 42 75-131 24-66 (74)
58 2f42_A STIP1 homology and U-bo 97.4 0.00015 5E-09 62.8 4.6 52 72-133 103-154 (179)
59 2ecg_A Baculoviral IAP repeat- 97.4 9.2E-05 3.2E-09 54.6 2.9 42 75-131 25-67 (75)
60 2d8s_A Cellular modulator of i 97.3 0.00039 1.3E-08 52.0 5.7 54 72-132 12-70 (80)
61 2c2l_A CHIP, carboxy terminus 97.3 0.00015 5.1E-09 67.1 4.1 54 71-134 204-257 (281)
62 2jmo_A Parkin; IBR, E3 ligase, 97.3 8.9E-05 3.1E-09 55.5 1.9 38 244-281 25-70 (80)
63 2vje_B MDM4 protein; proto-onc 97.2 0.00014 4.7E-09 51.8 2.4 50 73-131 5-55 (63)
64 4ap4_A E3 ubiquitin ligase RNF 97.2 9.8E-05 3.3E-09 60.4 1.7 56 72-136 69-129 (133)
65 2vje_A E3 ubiquitin-protein li 97.2 0.00019 6.4E-09 51.2 3.0 49 74-131 7-56 (64)
66 3dpl_R Ring-box protein 1; ubi 97.1 0.00037 1.3E-08 55.0 4.4 49 74-131 36-100 (106)
67 2y1n_A E3 ubiquitin-protein li 97.1 0.00034 1.2E-08 67.6 5.0 48 75-132 332-379 (389)
68 2ea5_A Cell growth regulator w 97.0 0.0008 2.7E-08 48.5 4.7 45 72-131 12-57 (68)
69 2yho_A E3 ubiquitin-protein li 96.9 0.00023 7.7E-09 53.1 1.4 43 75-132 18-61 (79)
70 4a0k_B E3 ubiquitin-protein li 96.4 0.00066 2.3E-08 54.5 0.4 48 75-131 48-111 (117)
71 3t6p_A Baculoviral IAP repeat- 95.9 0.0016 5.4E-08 62.4 0.6 43 74-131 294-337 (345)
72 2ct0_A Non-SMC element 1 homol 95.7 0.014 4.8E-07 42.6 5.0 51 72-131 12-63 (74)
73 2cs3_A Protein C14ORF4, MY039 95.7 0.039 1.3E-06 40.2 6.9 69 72-142 12-90 (93)
74 1wd2_A Ariadne-1 protein homol 95.4 0.011 3.6E-07 41.4 3.0 39 159-211 4-44 (60)
75 3vk6_A E3 ubiquitin-protein li 94.9 0.021 7E-07 43.9 3.6 45 77-131 3-48 (101)
76 1vyx_A ORF K3, K3RING; zinc-bi 94.8 0.048 1.6E-06 38.0 5.0 50 73-131 4-58 (60)
77 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.036 1.2E-06 52.3 5.4 58 73-132 306-373 (381)
78 2bay_A PRE-mRNA splicing facto 94.0 0.036 1.2E-06 38.8 3.1 50 75-135 3-53 (61)
79 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.055 1.9E-06 41.7 2.5 33 75-107 3-36 (101)
80 3lrq_A E3 ubiquitin-protein li 86.8 0.14 4.8E-06 39.3 0.3 34 245-283 23-57 (100)
81 2k4x_A 30S ribosomal protein S 86.1 0.28 9.7E-06 33.4 1.5 27 245-271 19-46 (55)
82 1iym_A EL5; ring-H2 finger, ub 85.8 0.2 7E-06 33.5 0.7 39 245-285 6-45 (55)
83 2jrp_A Putative cytoplasmic pr 85.7 0.59 2E-05 34.4 3.1 34 245-280 3-42 (81)
84 1vq8_Z 50S ribosomal protein L 85.7 0.58 2E-05 34.7 3.1 28 245-272 28-56 (83)
85 3nw0_A Non-structural maintena 85.4 0.96 3.3E-05 40.6 5.1 51 73-132 178-229 (238)
86 2ysj_A Tripartite motif-contai 85.3 0.21 7E-06 34.6 0.5 32 245-281 21-52 (63)
87 2ysl_A Tripartite motif-contai 84.8 0.34 1.2E-05 34.4 1.5 32 245-281 21-52 (73)
88 2d8t_A Dactylidin, ring finger 84.7 0.3 1E-05 34.7 1.2 37 245-286 16-52 (71)
89 3j20_Y 30S ribosomal protein S 84.7 0.38 1.3E-05 32.1 1.6 28 244-271 19-47 (50)
90 1pft_A TFIIB, PFTFIIBN; N-term 84.5 0.82 2.8E-05 30.2 3.2 28 244-271 5-34 (50)
91 4ayc_A E3 ubiquitin-protein li 84.2 0.33 1.1E-05 39.6 1.4 37 245-286 54-90 (138)
92 2ckl_A Polycomb group ring fin 83.4 0.31 1.1E-05 37.8 0.9 37 245-286 16-53 (108)
93 2yur_A Retinoblastoma-binding 83.0 0.25 8.5E-06 35.5 0.1 33 245-282 16-49 (74)
94 2y43_A E3 ubiquitin-protein li 82.4 0.33 1.1E-05 37.0 0.6 37 245-286 23-60 (99)
95 2ecn_A Ring finger protein 141 82.2 0.46 1.6E-05 33.5 1.3 36 245-286 16-51 (70)
96 2jr6_A UPF0434 protein NMA0874 81.9 0.78 2.7E-05 32.6 2.4 28 244-271 8-36 (68)
97 1e4u_A Transcriptional repress 80.3 0.42 1.4E-05 35.0 0.5 36 245-281 12-47 (78)
98 2egp_A Tripartite motif-contai 80.1 0.47 1.6E-05 34.2 0.7 33 245-282 13-45 (79)
99 1z60_A TFIIH basal transcripti 80.0 0.64 2.2E-05 32.1 1.3 22 194-215 31-52 (59)
100 3ng2_A RNF4, snurf, ring finge 79.7 0.22 7.6E-06 35.2 -1.2 42 245-286 11-54 (71)
101 2djb_A Polycomb group ring fin 79.4 0.27 9.1E-06 35.1 -0.8 34 245-283 16-50 (72)
102 3ztg_A E3 ubiquitin-protein li 79.4 0.29 9.8E-06 36.7 -0.7 32 245-281 14-46 (92)
103 2kiz_A E3 ubiquitin-protein li 79.0 0.38 1.3E-05 33.8 -0.1 40 245-286 15-54 (69)
104 2ecj_A Tripartite motif-contai 79.0 0.39 1.3E-05 32.3 -0.0 32 245-281 16-47 (58)
105 2jne_A Hypothetical protein YF 78.8 1.7 5.8E-05 32.9 3.4 35 245-281 33-73 (101)
106 2ct2_A Tripartite motif protei 78.7 0.39 1.3E-05 35.4 -0.1 37 245-282 16-52 (88)
107 2ect_A Ring finger protein 126 78.7 0.84 2.9E-05 32.8 1.7 40 245-286 16-55 (78)
108 1chc_A Equine herpes virus-1 r 78.4 0.42 1.5E-05 33.4 0.0 37 245-286 6-43 (68)
109 2ecm_A Ring finger and CHY zin 77.4 0.51 1.7E-05 31.4 0.2 37 245-283 6-43 (55)
110 1x4j_A Ring finger protein 38; 77.1 0.45 1.5E-05 34.2 -0.2 37 245-284 24-61 (75)
111 2l0b_A E3 ubiquitin-protein li 77.1 0.54 1.8E-05 35.3 0.3 40 245-286 41-80 (91)
112 3vk6_A E3 ubiquitin-protein li 76.6 0.79 2.7E-05 35.1 1.1 23 245-267 2-28 (101)
113 3fl2_A E3 ubiquitin-protein li 76.6 0.59 2E-05 37.2 0.4 32 245-281 53-84 (124)
114 2ep4_A Ring finger protein 24; 76.6 0.34 1.2E-05 34.6 -1.0 40 245-286 16-55 (74)
115 2d8v_A Zinc finger FYVE domain 76.1 1.3 4.3E-05 31.1 1.9 35 71-109 4-40 (67)
116 2ckl_B Ubiquitin ligase protei 75.9 0.58 2E-05 39.3 0.2 33 245-282 55-88 (165)
117 2ea6_A Ring finger protein 4; 75.6 0.34 1.2E-05 33.9 -1.2 39 245-283 16-56 (69)
118 2xeu_A Ring finger protein 4; 75.4 0.39 1.3E-05 33.0 -0.9 40 245-284 4-45 (64)
119 2ecy_A TNF receptor-associated 74.6 0.69 2.4E-05 32.2 0.2 32 245-281 16-47 (66)
120 2csy_A Zinc finger protein 183 74.6 0.48 1.7E-05 34.5 -0.6 37 245-286 16-52 (81)
121 1t1h_A Gspef-atpub14, armadill 74.4 0.92 3.1E-05 32.6 0.9 33 245-282 9-41 (78)
122 1wfl_A Zinc finger protein 216 73.8 1.3 4.4E-05 31.9 1.5 28 245-276 26-53 (74)
123 1joc_A EEA1, early endosomal a 72.7 3.2 0.00011 33.2 3.8 36 72-107 66-103 (125)
124 2ecl_A Ring-box protein 2; RNF 71.8 1.4 4.7E-05 32.2 1.3 29 258-286 39-67 (81)
125 1wfh_A Zinc finger (AN1-like) 70.4 1.7 5.7E-05 30.4 1.4 28 245-276 16-43 (64)
126 1weo_A Cellulose synthase, cat 70.3 8.6 0.00029 28.6 5.3 50 73-130 14-68 (93)
127 3l11_A E3 ubiquitin-protein li 69.8 1.9 6.4E-05 33.6 1.8 33 245-282 16-48 (115)
128 2ecw_A Tripartite motif-contai 69.4 0.99 3.4E-05 32.8 0.1 32 245-281 20-51 (85)
129 1zbd_B Rabphilin-3A; G protein 69.3 2.6 8.9E-05 34.2 2.6 31 74-104 54-87 (134)
130 3knv_A TNF receptor-associated 69.1 1 3.5E-05 36.9 0.1 34 245-283 32-65 (141)
131 1wg2_A Zinc finger (AN1-like) 67.3 1.9 6.6E-05 30.1 1.2 28 245-276 16-43 (64)
132 2hf1_A Tetraacyldisaccharide-1 67.0 3.2 0.00011 29.4 2.3 27 245-271 9-36 (68)
133 3hct_A TNF receptor-associated 66.8 1.2 4.1E-05 35.0 0.1 33 245-282 19-51 (118)
134 2js4_A UPF0434 protein BB2007; 66.6 3.5 0.00012 29.4 2.5 28 244-271 8-36 (70)
135 2ecv_A Tripartite motif-contai 65.9 1.1 3.7E-05 32.5 -0.3 31 245-280 20-50 (85)
136 2pk7_A Uncharacterized protein 65.7 3.7 0.00013 29.2 2.5 27 245-271 9-36 (69)
137 1jm7_B BARD1, BRCA1-associated 64.8 4.2 0.00014 31.7 3.0 32 245-281 23-55 (117)
138 1wff_A Riken cDNA 2810002D23 p 62.7 3.1 0.00011 30.8 1.6 29 245-276 26-54 (85)
139 1jm7_A BRCA1, breast cancer ty 62.0 1.5 5E-05 33.9 -0.3 33 245-282 22-54 (112)
140 2jrp_A Putative cytoplasmic pr 61.3 3.5 0.00012 30.2 1.7 30 245-282 32-64 (81)
141 3h0g_I DNA-directed RNA polyme 60.2 5 0.00017 31.4 2.6 27 245-271 5-36 (113)
142 1wfp_A Zinc finger (AN1-like) 60.0 3.2 0.00011 29.8 1.2 28 245-276 26-53 (74)
143 1twf_I B12.6, DNA-directed RNA 59.2 4.6 0.00016 32.1 2.2 28 244-271 4-36 (122)
144 1rmd_A RAG1; V(D)J recombinati 59.1 2.3 7.7E-05 33.2 0.3 33 245-282 24-56 (116)
145 2zet_C Melanophilin; complex, 58.8 9.7 0.00033 31.5 4.2 31 74-104 67-100 (153)
146 4a0k_B E3 ubiquitin-protein li 58.7 2 6.9E-05 34.0 0.0 30 257-286 74-103 (117)
147 2jny_A Uncharacterized BCR; st 58.5 5.7 0.0002 28.0 2.3 28 244-271 10-38 (67)
148 3qt1_I DNA-directed RNA polyme 58.2 3.8 0.00013 33.2 1.5 30 242-271 22-56 (133)
149 1weo_A Cellulose synthase, cat 58.0 5.6 0.00019 29.6 2.3 43 191-261 33-75 (93)
150 3hcs_A TNF receptor-associated 57.4 2.3 7.7E-05 35.7 0.1 32 245-281 19-50 (170)
151 1z6u_A NP95-like ring finger p 56.8 2.4 8.1E-05 35.0 0.1 34 245-283 79-112 (150)
152 3dpl_R Ring-box protein 1; ubi 55.5 3.7 0.00013 31.8 1.0 29 258-286 64-92 (106)
153 1z60_A TFIIH basal transcripti 55.1 6.2 0.00021 27.1 2.0 28 76-103 16-44 (59)
154 3u5c_f 40S ribosomal protein S 54.7 5.8 0.0002 32.8 2.1 29 245-273 119-150 (152)
155 1v87_A Deltex protein 2; ring- 54.2 3.2 0.00011 32.1 0.5 36 245-280 26-74 (114)
156 1dl6_A Transcription factor II 52.4 10 0.00036 25.7 2.8 26 245-270 12-39 (58)
157 2lbm_A Transcriptional regulat 51.7 62 0.0021 26.2 7.8 53 70-129 58-117 (142)
158 3m7n_A Putative uncharacterize 50.2 7.1 0.00024 33.2 2.1 24 245-270 141-165 (179)
159 3v43_A Histone acetyltransfera 50.0 21 0.00073 27.5 4.7 50 74-127 4-62 (112)
160 4ic3_A E3 ubiquitin-protein li 48.9 14 0.00047 26.1 3.2 40 232-279 15-55 (74)
161 1twf_L ABC10-alpha, DNA-direct 48.3 4.8 0.00016 28.7 0.6 25 244-269 28-53 (70)
162 2xzm_9 RPS31E; ribosome, trans 48.3 8.2 0.00028 33.2 2.1 28 245-273 114-143 (189)
163 1wii_A Hypothetical UPF0222 pr 47.9 8.2 0.00028 28.6 1.8 27 245-271 24-57 (85)
164 2y1n_A E3 ubiquitin-protein li 47.0 9 0.00031 36.8 2.4 33 244-281 332-364 (389)
165 1g25_A CDK-activating kinase a 46.8 5.1 0.00017 27.4 0.5 34 245-279 4-38 (65)
166 2kpi_A Uncharacterized protein 46.7 13 0.00043 25.1 2.5 25 245-271 11-38 (56)
167 3zyq_A Hepatocyte growth facto 44.4 38 0.0013 29.7 6.0 33 75-107 164-198 (226)
168 2akl_A PHNA-like protein PA012 44.0 11 0.00038 30.0 2.1 26 245-271 28-54 (138)
169 2ko5_A Ring finger protein Z; 43.6 9.4 0.00032 28.7 1.5 48 73-132 26-73 (99)
170 1z2q_A LM5-1; membrane protein 43.2 12 0.00041 27.4 2.1 35 72-106 18-54 (84)
171 1k81_A EIF-2-beta, probable tr 42.7 13 0.00045 22.6 1.9 25 246-270 2-30 (36)
172 3t7l_A Zinc finger FYVE domain 41.7 15 0.00052 27.2 2.5 36 72-107 17-54 (90)
173 1x4v_A Hypothetical protein LO 39.9 13 0.00046 25.7 1.8 39 161-218 12-50 (63)
174 3a1b_A DNA (cytosine-5)-methyl 38.1 21 0.00072 29.6 3.0 38 69-109 73-113 (159)
175 1wfe_A Riken cDNA 2310008M20 p 37.5 24 0.00084 26.0 3.0 41 160-219 24-64 (86)
176 2yw8_A RUN and FYVE domain-con 36.9 13 0.00046 27.0 1.5 35 72-106 16-52 (82)
177 1x4u_A Zinc finger, FYVE domai 36.3 16 0.00053 26.7 1.8 34 72-105 11-46 (84)
178 2f9y_B Acetyl-coenzyme A carbo 35.9 6.3 0.00022 36.6 -0.6 32 242-273 22-55 (304)
179 3qt1_I DNA-directed RNA polyme 35.8 25 0.00084 28.3 3.0 35 158-202 21-55 (133)
180 2o35_A Hypothetical protein DU 35.4 20 0.00067 27.2 2.2 16 99-114 43-58 (105)
181 3na7_A HP0958; flagellar bioge 34.0 29 0.00098 31.1 3.5 62 134-203 168-232 (256)
182 3htk_C E3 SUMO-protein ligase 33.8 14 0.00048 33.4 1.3 41 245-290 182-223 (267)
183 3lqh_A Histone-lysine N-methyl 32.7 13 0.00044 31.7 0.9 73 76-151 3-84 (183)
184 1dvp_A HRS, hepatocyte growth 32.1 22 0.00076 31.0 2.4 33 245-279 162-195 (220)
185 3fyb_A Protein of unknown func 32.0 18 0.00061 27.4 1.5 16 99-114 42-57 (104)
186 1wfk_A Zinc finger, FYVE domai 31.9 24 0.00081 26.1 2.2 34 73-106 7-42 (88)
187 1vfy_A Phosphatidylinositol-3- 30.5 17 0.00059 25.7 1.2 31 76-106 12-44 (73)
188 2hu9_A MERP, mercuric transpor 30.3 48 0.0016 26.5 3.9 44 120-175 3-49 (130)
189 3nyb_B Protein AIR2; polya RNA 30.0 29 0.001 25.4 2.3 19 201-219 5-23 (83)
190 3h0g_L DNA-directed RNA polyme 29.8 17 0.00057 25.3 0.9 28 243-271 20-48 (63)
191 2k16_A Transcription initiatio 29.8 37 0.0013 23.9 2.9 33 73-105 16-49 (75)
192 3u5c_f 40S ribosomal protein S 29.6 16 0.00055 30.0 1.0 34 161-206 118-151 (152)
193 1fre_A Nuclear factor XNF7; zi 28.3 42 0.0014 20.4 2.6 25 192-216 13-38 (42)
194 3ql9_A Transcriptional regulat 28.2 1.2E+02 0.0041 24.1 5.9 52 70-128 52-110 (129)
195 2zet_C Melanophilin; complex, 27.8 27 0.00091 28.8 2.0 35 244-279 68-103 (153)
196 2ri7_A Nucleosome-remodeling f 27.2 19 0.00063 30.1 0.9 75 72-151 5-81 (174)
197 1joc_A EEA1, early endosomal a 26.8 31 0.0011 27.3 2.2 19 192-210 84-102 (125)
198 1wep_A PHF8; structural genomi 26.7 69 0.0024 22.8 3.9 54 72-130 9-64 (79)
199 1gh9_A 8.3 kDa protein (gene M 26.2 31 0.001 24.5 1.8 16 245-261 5-20 (71)
200 3zyq_A Hepatocyte growth facto 26.1 32 0.0011 30.1 2.4 33 245-279 165-198 (226)
201 2xzf_A Formamidopyrimidine-DNA 25.8 26 0.0009 31.7 1.8 24 245-268 243-269 (271)
202 1f62_A Transcription factor WS 25.7 47 0.0016 21.3 2.6 46 77-127 2-48 (51)
203 1nui_A DNA primase/helicase; z 25.4 34 0.0012 30.3 2.4 22 245-269 15-41 (255)
204 1ee8_A MUTM (FPG) protein; bet 25.3 31 0.001 31.2 2.1 24 245-268 236-262 (266)
205 3u6p_A Formamidopyrimidine-DNA 24.4 28 0.00097 31.5 1.7 21 245-265 246-268 (273)
206 1k82_A Formamidopyrimidine-DNA 24.3 29 0.001 31.3 1.8 21 245-265 241-263 (268)
207 2c2l_A CHIP, carboxy terminus 24.2 16 0.00056 32.6 0.0 33 245-282 209-241 (281)
208 3mjh_B Early endosome antigen 24.1 21 0.00072 21.5 0.5 16 73-88 3-18 (34)
209 1vk6_A NADH pyrophosphatase; 1 23.8 76 0.0026 28.5 4.5 27 244-270 107-134 (269)
210 1wem_A Death associated transc 23.6 98 0.0033 21.7 4.2 33 73-106 14-47 (76)
211 1k3x_A Endonuclease VIII; hydr 23.5 31 0.0011 31.0 1.8 23 245-267 235-260 (262)
212 2yvr_A Transcription intermedi 23.1 20 0.00067 23.0 0.3 26 192-217 17-42 (50)
213 2kdx_A HYPA, hydrogenase/ureas 23.1 73 0.0025 24.7 3.7 15 159-175 71-85 (119)
214 1dvp_A HRS, hepatocyte growth 22.4 26 0.00089 30.5 1.0 33 75-107 161-195 (220)
215 3j21_i 50S ribosomal protein L 21.9 80 0.0027 23.1 3.3 27 245-271 36-63 (83)
216 1y02_A CARP2, FYVE-ring finger 21.0 27 0.00094 27.5 0.8 36 73-108 17-54 (120)
217 3jyw_9 60S ribosomal protein L 20.7 67 0.0023 22.8 2.6 27 245-271 27-54 (72)
218 1zbd_B Rabphilin-3A; G protein 20.7 46 0.0016 26.7 2.0 37 243-280 54-91 (134)
219 1we9_A PHD finger family prote 20.5 38 0.0013 23.0 1.3 33 73-105 4-38 (64)
220 3j21_g 50S ribosomal protein L 20.1 21 0.00071 23.6 -0.1 9 245-253 15-23 (51)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.77 E-value=4.1e-20 Score=131.58 Aligned_cols=52 Identities=31% Similarity=0.762 Sum_probs=47.1
Q ss_pred cCCCCCccccceeeecCCCcceEe-c--cccceeccccccccCCCC-cccccCCCC
Q 016355 242 KRWRRCQQCRRMIELTHGCYHMTC-W--CGHEFCYSCGAEYRDGQQ-TCQCAFWDE 293 (391)
Q Consensus 242 ~~~k~CP~C~~~IeK~~GCnhMtC-~--C~~~FCw~C~~~~~~~~~-~c~C~~~~~ 293 (391)
.++|+||+|+++|||++||||||| . |+++|||+|+++|+.|+. .+.|++|++
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~ 59 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence 356999999999999999999999 5 999999999999998865 479999986
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.68 E-value=6.1e-17 Score=127.21 Aligned_cols=86 Identities=19% Similarity=0.481 Sum_probs=78.5
Q ss_pred CCCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCC-cccccCCCccCCc--cCHHHHHhhCChhHHHHH
Q 016355 72 DKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQ-VPIRCPQLRCKYF--ISTVECKSFLPLSSYESL 147 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~-~~i~CP~~~C~~~--i~~~~i~~~l~~~~~e~~ 147 (391)
....++|+||+++++.+.++.+ +|||.||.+||++|++.+|.+|. .+++||.++|+.. ++.+.++.+++++++++|
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CCSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 3467899999999998888888 79999999999999999998886 4799999999999 999999999999999999
Q ss_pred HHHHHHHhcC
Q 016355 148 ETALAEANIL 157 (391)
Q Consensus 148 ~~~~~~~~i~ 157 (391)
.+++.+.++.
T Consensus 82 ~~~~~~~~v~ 91 (94)
T 1wim_A 82 KKLQFERSGP 91 (94)
T ss_dssp HHHHHHSSCS
T ss_pred HHHHHHhhhc
Confidence 9998888775
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.29 E-value=7.8e-14 Score=107.26 Aligned_cols=73 Identities=27% Similarity=0.579 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHHHhcC-CCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcccccccccCC---CCCC
Q 016355 140 PLSSYESLETALAEANIL-HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPW---HSSL 215 (391)
Q Consensus 140 ~~~~~e~~~~~~~~~~i~-~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~---H~~~ 215 (391)
+++++++|++++.+.+|. +.+++||| +|++++..+ .....++|+.|++.||+.|+.+| |.|.
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~------------~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYE------------REQLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECC------------CSCSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheec------------CCCCceEeCCCCCccccccCCchhhcCCCC
Confidence 356677888888888887 56678999 899988652 12355899999999999999999 9999
Q ss_pred CchhHhcCccc
Q 016355 216 SCEEYQNLPLE 226 (391)
Q Consensus 216 sC~e~~~~~~~ 226 (391)
+|.++++|..+
T Consensus 69 sC~~~~~w~~~ 79 (86)
T 2ct7_A 69 SCEDFQNWKRM 79 (86)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHh
Confidence 99999999773
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-13 Score=102.84 Aligned_cols=70 Identities=27% Similarity=0.542 Sum_probs=59.8
Q ss_pred hCChhHHHHHHHHHHHHhcCCCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCC-----CCCcccccccccCCC
Q 016355 138 FLPLSSYESLETALAEANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECP-----VCERFICVECGVPWH 212 (391)
Q Consensus 138 ~l~~~~~e~~~~~~~~~~i~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~-----~C~~~fC~~C~~~~H 212 (391)
+|+++++++|++++.+.++.....+|||+|+|++++..+ .+...+.|+ .|++.||+.|+.+||
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~------------~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPE------------PDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCC------------SCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEEC------------CCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 578889999999998888886569999999999998762 133558898 999999999999999
Q ss_pred CCCCchhH
Q 016355 213 SSLSCEEY 220 (391)
Q Consensus 213 ~~~sC~e~ 220 (391)
. .+|.+.
T Consensus 70 ~-~~C~~~ 76 (80)
T 2jmo_A 70 E-GECSAV 76 (80)
T ss_dssp S-SCSSSC
T ss_pred C-Cccccc
Confidence 9 999753
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=1e-10 Score=96.97 Aligned_cols=117 Identities=23% Similarity=0.566 Sum_probs=76.7
Q ss_pred CCcccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHH
Q 016355 73 KSPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESL 147 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~-----~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~ 147 (391)
...++|+||++.+..+ ..+.++|||.||.+|+.+|+... ..||. |...+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCCC--CCCcCccccccccc--------
Confidence 3578999999987532 23556999999999999998532 38998 99888655433321
Q ss_pred HHHHHHHhcCCCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcccccccccCCCCCCCchhHhcCcccc
Q 016355 148 ETALAEANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCEEYQNLPLEE 227 (391)
Q Consensus 148 ~~~~~~~~i~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~~~sC~e~~~~~~~~ 227 (391)
...+...|| -|...+.... ......+ ...||+.||..|-..|.
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~----------~~~~~~~-~~~CgH~fc~~Ci~~~~--------------- 110 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIV----------QNGRLIV-STECGHVFCSQCLRDSL--------------- 110 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHH----------HTTCCEE-EETTSBEEEHHHHHHHH---------------
T ss_pred ---------cCCCCCCCC--CCCCcccccc----------ccCcceE-eCCCCChhhHHHHHHHH---------------
Confidence 124556787 4655443210 0011122 33799999999976542
Q ss_pred cChhHHHHHHHHhccCCCCCccccceeeec
Q 016355 228 RDAGDITLHRLAQNKRWRRCQQCRRMIELT 257 (391)
Q Consensus 228 ~~~~~~~~~~l~~~~~~k~CP~C~~~IeK~ 257 (391)
... +.||.|+..|.++
T Consensus 111 -----------~~~---~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 -----------KNA---NTCPTCRKKINHK 126 (133)
T ss_dssp -----------HHC---SBCTTTCCBCCGG
T ss_pred -----------HcC---CCCCCCCCcCChh
Confidence 111 7999999999865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.79 E-value=2.2e-09 Score=93.11 Aligned_cols=105 Identities=21% Similarity=0.469 Sum_probs=68.1
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHHHHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALA 152 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~~~~~~ 152 (391)
...++|+||++.+..+ +.++|||.||..|+..++.... ..||. |...+....+ .....+ .+.+
T Consensus 16 ~~~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~~~------~~CP~--Cr~~~~~~~~---~~~~~~---~~~i- 78 (170)
T 3hcs_A 16 ESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG------HKCPV--DNEILLENQL---FPDNFA---KREI- 78 (170)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHC------SBCTT--TCCBCCGGGC---EECHHH---HHHH-
T ss_pred CCCCCCCCCChhhcCc--EECCCCCHHHHHHHHHHHHhCC------CCCCC--CccCcchhhh---hhhHHH---HHHH-
Confidence 4578999999987654 5679999999999999997542 28998 9888876432 222111 1111
Q ss_pred HHhcCCCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCccc
Q 016355 153 EANILHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFI 203 (391)
Q Consensus 153 ~~~i~~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~f 203 (391)
..-.++||+.+|+..+...+... -. ..-....+.|+.|+..+
T Consensus 79 -----~~l~v~C~n~GC~~~~~~~~l~~-H~---~~C~~~~v~C~~C~~~~ 120 (170)
T 3hcs_A 79 -----LSLMVKCPNEGCLHKMELRHLED-HQ---AHCEFALMDCPQCQRPF 120 (170)
T ss_dssp -----HTSEEECCSTTCCCEEEGGGHHH-HH---TTCTTSEEECTTTCCEE
T ss_pred -----hhcccCCCCCCCCceecHhHHHH-HH---hcCCceeeECCCCChHH
Confidence 13457999999999887644321 00 01123456677666554
No 7
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.49 E-value=1e-07 Score=77.14 Aligned_cols=81 Identities=25% Similarity=0.518 Sum_probs=57.4
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHHHHHHHHH
Q 016355 75 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALAEA 154 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~~~~~~~~ 154 (391)
.++|+||++.+..+ +.++|||.||..|+..|+... ...||. |...+....+... . ..+...+
T Consensus 23 ~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~~~-~----~~l~~~i--- 84 (116)
T 1rmd_A 23 SISCQICEHILADP--VETSCKHLFCRICILRCLKVM------GSYCPS--CRYPCFPTDLESP-V----KSFLNIL--- 84 (116)
T ss_dssp HTBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCBCC-C----HHHHHHH---
T ss_pred CCCCCCCCcHhcCc--EEcCCCCcccHHHHHHHHhHC------cCcCCC--CCCCCCHhhcccc-H----HHHHHHH---
Confidence 57899999987644 557999999999999999752 247998 9998877554322 1 1112221
Q ss_pred hcCCCCCccccCCCCCeeecCc
Q 016355 155 NILHSDRIYCPFPNCSVLLDPR 176 (391)
Q Consensus 155 ~i~~~~~~~CP~p~C~~~~~~~ 176 (391)
..-.++||+.+|+..+...
T Consensus 85 ---~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 85 ---NSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp ---HHCEEECCSTTCCCEEEHH
T ss_pred ---HHhcCCCCCCCCcchhhHh
Confidence 1235789999999887653
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=71.91 Aligned_cols=59 Identities=20% Similarity=0.519 Sum_probs=45.3
Q ss_pred CCCcccccccccccCCCC--eeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHH
Q 016355 72 DKSPENCSICCEDKPYPM--MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 136 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~--~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~ 136 (391)
....++|+||++.+.... .+.++|||.||..|+..|+... .....||. |...+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~i~ 72 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCPF--CSKITRITSLT 72 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCTT--TCCCBCCSSTT
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCCC--CCCcccchhHH
Confidence 456789999999987643 4556999999999999999764 12468998 99887655443
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.4e-07 Score=71.49 Aligned_cols=58 Identities=24% Similarity=0.610 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
....++|+||++.+..+ +.++|||.||..|+..|+..+...+. ...||. |...+..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~-~~~CP~--Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP--LSLDCGHSFCQACLTANHKKSMLDKG-ESSCPV--CRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC--BCCSSSCCBCTTHHHHHHHHHHHTTS-CCCCTT--TCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc--eeCCCCCHHHHHHHHHHHHHhhcCCC-CCcCCC--CCCccCHHh
Confidence 45678999999988654 45699999999999999988664433 468998 998876543
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.45 E-value=2.7e-08 Score=74.64 Aligned_cols=60 Identities=25% Similarity=0.500 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 135 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i 135 (391)
....++|+||++.+..+ +.++|||.||..|+..|+......+.....||. |...+....+
T Consensus 9 ~~~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l 68 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP--LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHL 68 (79)
T ss_dssp CCCCCEETTTTEECSSC--CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGG
T ss_pred cccCCCCcCCCcccCCe--eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhC
Confidence 34578999999988654 456999999999999998654433334579998 9988875443
No 11
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=1.7e-07 Score=75.12 Aligned_cols=70 Identities=30% Similarity=0.549 Sum_probs=49.9
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhh-CChhHHHHHHHHHH
Q 016355 75 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSF-LPLSSYESLETALA 152 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~-l~~~~~e~~~~~~~ 152 (391)
.++|+||++.+..+ +.++|||.||..|+..|+... .....||. |...+....+... .-..+.+.+.+.+.
T Consensus 21 ~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 21 ILECPICLELIKEP--VSTKCDHIFCKFCMLKLLNQK----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp HTSCSSSCCCCSSC--CBCTTSCCCCSHHHHHHHHSS----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCCcccChhhcCe--EECCCCCHHHHHHHHHHHHhC----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 56899999987654 456999999999999998742 23468998 9998887665432 23345555555443
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.44 E-value=2.3e-07 Score=70.23 Aligned_cols=58 Identities=24% Similarity=0.545 Sum_probs=44.9
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
....++|+||++.+..+ +.++|||.||..|+..|+......+ ....||. |...+..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP~--Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNTD-GKGNCPV--CRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC--EECTTSCCBCHHHHHHHHHHSBCTT-SCBCCTT--TCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc--eeCCCCCHHHHHHHHHHHHhccCCC-CCCCCCC--CCCcCCHHh
Confidence 45678999999987655 4569999999999999998754222 2468998 998887543
No 13
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.43 E-value=3.3e-07 Score=74.35 Aligned_cols=83 Identities=23% Similarity=0.457 Sum_probs=58.5
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHHHHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALA 152 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~~~~~~ 152 (391)
...++|+||++.+..+ +.++|||.||..|+..|+...- ..||. |...+....+ .....+ .+.
T Consensus 16 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~------~~CP~--Cr~~~~~~~~---~~~~~l---~~~-- 77 (118)
T 3hct_A 16 ESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG------HKCPV--DNEILLENQL---FPDNFA---KRE-- 77 (118)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHC------SBCTT--TCCBCCGGGC---EECHHH---HHH--
T ss_pred CCCCCCCcCChhhcCe--EECCcCChhhHHHHHHHHhhCC------CCCCC--CCCCcCHHhc---ccCHHH---HHH--
Confidence 4578999999987644 5679999999999999997541 28998 9988876432 222211 111
Q ss_pred HHhcCCCCCccccCCCCCeeecCcc
Q 016355 153 EANILHSDRIYCPFPNCSVLLDPRE 177 (391)
Q Consensus 153 ~~~i~~~~~~~CP~p~C~~~~~~~~ 177 (391)
+ ..-.++||+.+|+..+...+
T Consensus 78 ---i-~~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 78 ---I-LSLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp ---H-HTSEEECSSTTCCCEEEGGG
T ss_pred ---H-ccceeECCCCCCCCEEeeHH
Confidence 1 13457999999998887743
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.3e-07 Score=67.06 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
....++|+||++.+..+ +.++|||.||..|+..|+. .....||. |...+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~------~~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP--KQTECGHRFCESCMAALLS------SSSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSC--CCCSSSCCCCHHHHHHHHT------TSSCCCTT--TCCCCCTT
T ss_pred CCcCCCCCCCChHhcCe--eECCCCCHHHHHHHHHHHH------hCcCCCCC--CCcCCChh
Confidence 34578999999988655 4479999999999999985 12358998 98887654
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.8e-07 Score=67.87 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 71 GDKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
.....++|+||++.+..+ +.+ +|||.||..|+..|+.. ...||. |...+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-------SNRCPK--CNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-------CSSCTT--TCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-------CCcCCC--cCcccCccc
Confidence 345678999999987654 566 99999999999999965 258998 998876543
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.37 E-value=3.4e-07 Score=63.44 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=39.1
Q ss_pred CCcccccccccccCC--CCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 73 KSPENCSICCEDKPY--PMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~--~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
....+|+||++++.. .....++|+|.||.+|+..|+... ..||. |...++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCCC--CCCcCC
Confidence 456789999998854 234455999999999999999763 57998 887663
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.3e-07 Score=69.76 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
....++|+||++.+..+ +.++|||.||..|+..|+. .......||. |...+..+
T Consensus 17 ~~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~----~~~~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP--VTIDCGHNFCLKCITQIGE----TSCGFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE--EECTTCCEEEHHHHHHHCS----SSCSCCCCSS--SCCCCCCC
T ss_pred CccCCEeccCCcccCCe--EEcCCCChhhHHHHHHHHH----cCCCCCCCCC--CCCcCCcc
Confidence 35578999999987643 5569999999999999985 1223468998 98887643
No 18
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=6.1e-07 Score=64.07 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=36.2
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCC
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQ 123 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~ 123 (391)
....++|+||++.+..+ +.++|||.||..|+.+|+... ....+||.
T Consensus 17 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP--VTIDCGHNFCLKCITQIGETS----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCSSC--EECTTSSEECHHHHHHHHHHC----SSCCCCSC
T ss_pred CccCCCCCcCCchhCCe--EEeCCCCcchHHHHHHHHHcC----CCCCcCcC
Confidence 35678999999988754 566999999999999999751 22457886
No 19
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=2.1e-07 Score=67.07 Aligned_cols=55 Identities=18% Similarity=0.539 Sum_probs=40.7
Q ss_pred ccccccccc-ccCCCCe--eeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHh
Q 016355 75 PENCSICCE-DKPYPMM--ITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 137 (391)
Q Consensus 75 ~~~C~IC~e-~~~~~~~--~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~ 137 (391)
..+|+||++ .+..+.. +.++|||.||..|+.+++.. + ...||. |+..+....++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~--~~~CP~--Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G--AGNCPE--CGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T--SSSCTT--TCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C--CCcCCC--CCCcccccccee
Confidence 568999999 5544332 44599999999999999752 2 358998 999887655543
No 20
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-06 Score=63.38 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCC-CeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 71 GDKSPENCSICCEDKPYP-MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~-~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
......+|+||++.+... ....++|+|.||..|+..|+... ..||. |...+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCPI--CRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCcC--cCcccc
Confidence 345577899999988643 44556999999999999999752 26998 888764
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.5e-07 Score=67.11 Aligned_cols=55 Identities=25% Similarity=0.513 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHh
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKS 137 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~ 137 (391)
....++|+||++.+... +.++|+|.||..|+..|+.. ...||. |...+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP--VSLPCKHVFCYLCVKGASWL-------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBCSSE--EEETTTEEEEHHHHHHCTTC-------SSBCSS--SCCBCCHHHHSC
T ss_pred CCCCCCCccCCcccCCC--EEccCCCHHHHHHHHHHHHC-------CCcCcC--cCchhCHhhccC
Confidence 45678999999987543 56699999999999998742 148998 999998766543
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.25 E-value=6e-07 Score=69.28 Aligned_cols=50 Identities=22% Similarity=0.534 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCCCeeecc-CCCcccHHHHHHHHHHHhhCCCcccccCCCccCCcc
Q 016355 72 DKSPENCSICCEDKPYPMMITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 130 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~-C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i 130 (391)
....++|+||++.+..+ +.++ |||.||..|+..|+... + ...||. |...+
T Consensus 10 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLES---D--EHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC--EECTTTCCEECHHHHHHHHHHC---T--TCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCc--eECCCCCCHHHHHHHHHHHHhc---C--CCcCcC--CCCcC
Confidence 34678999999988755 6677 99999999999998742 2 358998 98876
No 23
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.24 E-value=7.1e-07 Score=66.80 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCCCeeec--cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 72 DKSPENCSICCEDKPYPMMITM--KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l--~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
....++|+||++.+...+...+ .|||.||..|+..++.. ....||. |...+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCTT--TCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCCC--CCCccCCC
Confidence 3457899999998754433333 59999999999988642 2358998 99887643
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.24 E-value=6.1e-07 Score=67.00 Aligned_cols=52 Identities=13% Similarity=0.304 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
...+.|+||++.+..+ +.++|||.||..|+..|+.. | ...||. |+..+....
T Consensus 6 ~~~~~C~IC~~~~~~P--v~~~CgH~fc~~Ci~~~~~~----~--~~~CP~--C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP--VIVSTGQTYERSSIQKWLDA----G--HKTCPK--SQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSE--EEETTTEEEEHHHHHHHHTT----T--CCBCTT--TCCBCSSCC
T ss_pred cccCCCCCccccccCC--EEcCCCCeecHHHHHHHHHH----C--cCCCCC--CcCCCChhh
Confidence 4578999999987644 56699999999999999952 2 358998 998886543
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.23 E-value=2.3e-07 Score=66.33 Aligned_cols=54 Identities=26% Similarity=0.701 Sum_probs=41.1
Q ss_pred CcccccccccccCCC----C-eeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHH
Q 016355 74 SPENCSICCEDKPYP----M-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 136 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~----~-~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~ 136 (391)
...+|+||++.+..+ + .+.++|||.||.+|+..|+.. ...||. |...+...++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCCC--CCccCCcccee
Confidence 467899999987532 2 244599999999999999975 248998 99888765443
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.7e-06 Score=65.05 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 71 GDKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.....++|+||++.+..+ +.++|||.||..|+..|+.. ...||. |...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP--VVTKCRHYFCESCALEHFRA-------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE--EECTTSCEEEHHHHHHHHHH-------CSBCSS--SCCBCC
T ss_pred cCCCCCCCcCCCchhcCe--eEccCCCHhHHHHHHHHHHC-------CCcCCC--cCcccc
Confidence 345678999999988543 55799999999999999964 348998 998875
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.20 E-value=1.6e-06 Score=64.04 Aligned_cols=51 Identities=22% Similarity=0.513 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCCeeecc-CCCcccHHHHHHHHHHHhhCCCcccccCCCccCCcc
Q 016355 71 GDKSPENCSICCEDKPYPMMITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 130 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l~-C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i 130 (391)
.....++|+||++.+..+ +.++ |||.||..|+..|+... + ...||. |...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP~--Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLES---D--EHTCPT--CHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC--EECSSSCCEECTTHHHHHHHHS---S--SSCCSS--SCCSS
T ss_pred cCCCCCCCcCCChHHhCC--eEcCCCCCHHHHHHHHHHHHhc---C--CCcCCC--CCCcC
Confidence 345678999999988755 6677 99999999999999752 1 358998 88864
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1e-06 Score=63.89 Aligned_cols=52 Identities=27% Similarity=0.738 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCCC----C-eeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 71 GDKSPENCSICCEDKPYP----M-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~----~-~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
......+|+||++.+... . .+.++|||.||..|+..|+.. ...||. |...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCCC--CCCccC
Confidence 345678999999987532 2 245599999999999999975 247998 887764
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.19 E-value=7.2e-08 Score=80.87 Aligned_cols=91 Identities=24% Similarity=0.447 Sum_probs=55.8
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHHHHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLETALA 152 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~~~~~~ 152 (391)
...++|+||++.+..+ +.++|||.||..|+..|+.. + ...||. |...+..+....++.... .|.....
T Consensus 29 ~~~~~C~IC~~~~~~p--v~~~CgH~FC~~Ci~~~~~~----~--~~~CP~--Cr~~~~~~~~~~~l~~~~--~~~d~~~ 96 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--FQAQCGHRYCSFCLASILSS----G--PQNCAA--CVHEGIYEEGISILESSS--AFPDNAA 96 (141)
T ss_dssp CGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHGGG----S--CEECHH--HHHTTCCCTTTTEECGGG--CEECHHH
T ss_pred CcCcCCCCCChhhcCc--EECCCCCccCHHHHHHHHhc----C--CCCCCC--CCCcccccccccccchhh--hcccHHH
Confidence 4578999999987655 66799999999999999842 2 247987 776543322211121110 0000001
Q ss_pred HHhcCCCCCccccCCCCCeeecCc
Q 016355 153 EANILHSDRIYCPFPNCSVLLDPR 176 (391)
Q Consensus 153 ~~~i~~~~~~~CP~p~C~~~~~~~ 176 (391)
+..+ ..-.++||+.+|+..+...
T Consensus 97 ~~~i-~~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 97 RREV-ESLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp HHHH-HTSEEECCSTTCCCEEEHH
T ss_pred HHHH-cccccccCCCCCCCEeEHH
Confidence 1111 1345799999999887664
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=68.52 Aligned_cols=53 Identities=25% Similarity=0.539 Sum_probs=42.8
Q ss_pred CcccccccccccCCCCeee-ccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHH
Q 016355 74 SPENCSICCEDKPYPMMIT-MKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 136 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~-l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~ 136 (391)
..++|+||++.+..+ +. ++|||.||..|+..|+... ...||. |...+..+.+.
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQ------RAQCPH--CRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCE
T ss_pred CCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHC------cCCCCC--CCCcCCHHHhH
Confidence 367899999988643 66 6999999999999999763 158998 99998776554
No 31
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=63.08 Aligned_cols=52 Identities=23% Similarity=0.528 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCCCee-eccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 71 GDKSPENCSICCEDKPYPMMI-TMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~-~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
......+|+||++.+.....+ .++|+|.||..|+..|+... ..||. |...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCTT--TCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCCC--cCcccc
Confidence 345577999999998755444 34999999999999999752 27998 888764
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=60.43 Aligned_cols=46 Identities=26% Similarity=0.744 Sum_probs=35.3
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCC
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQ 123 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~ 123 (391)
.....+|+||++.+..+ +.++|||.||..|+..|+.. ......||.
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~----~~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP--VIIECGHNFCKACITRWWED----LERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSC--CCCSSCCCCCHHHHHHHTTS----SCCSCCCSC
T ss_pred cccCCCCccCCcccCcc--EeCCCCCccCHHHHHHHHHh----cCCCCCCCC
Confidence 34578999999988755 45699999999999999742 122457886
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.16 E-value=3.6e-07 Score=66.83 Aligned_cols=55 Identities=25% Similarity=0.695 Sum_probs=41.7
Q ss_pred CCcccccccccccCCC----C-eeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHH
Q 016355 73 KSPENCSICCEDKPYP----M-MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 136 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~----~-~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~ 136 (391)
....+|+||++.+..+ . .+.++|||.||..|+..|+... ..||. |...+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCCC--CCCccChhhee
Confidence 4578999999987432 2 2455999999999999999752 38998 99887655443
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.14 E-value=9e-07 Score=71.33 Aligned_cols=51 Identities=29% Similarity=0.767 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
....++|+||++.+..+ +.++|||.||..|+..++.. + ...||. |...+..
T Consensus 12 ~~~~~~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~----~--~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEP--VTLPCNHTLCKPCFQSTVEK----A--SLCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSC--EECTTSCEECHHHHCCCCCT----T--TSBCTT--TCCBCHH
T ss_pred CCCCCCCccCCcccCce--eEcCCCCHHhHHHHHHHHhH----C--cCCCCC--CCcccCc
Confidence 34568999999988654 66799999999999988742 1 358998 9998865
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.11 E-value=1.5e-06 Score=64.83 Aligned_cols=54 Identities=22% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCCCe-eeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 71 GDKSPENCSICCEDKPYPMM-ITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~-~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
......+|+||++.+..... ..++|+|.||..|+..|+... ..||. |...+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------DSCPV--CRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------CSCTT--TCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------CcCcC--cCCccCCc
Confidence 34567899999999876544 445999999999999998521 37998 98887643
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.09 E-value=1.4e-06 Score=68.29 Aligned_cols=49 Identities=29% Similarity=0.780 Sum_probs=39.8
Q ss_pred cccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 75 PENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
.++|+||++.+..+ +.+ +|||.||..|+..|+.. ...||. |...+....
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSY-------KTQCPT--CCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTT-------CCBCTT--TCCBCCGGG
T ss_pred CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHC-------CCCCCC--CCCcCChhh
Confidence 57899999988654 556 89999999999999962 248998 999887643
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.08 E-value=2.5e-06 Score=69.72 Aligned_cols=49 Identities=29% Similarity=0.677 Sum_probs=39.4
Q ss_pred CcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 74 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
..++|+||++.+..+ +.++|||.||..|+..|+.. ....||. |...+..
T Consensus 51 ~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP--ITTVCQHNVCKDCLDRSFRA------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE--EECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCc--EEeeCCCcccHHHHHHHHhH------CcCCCCC--CCccCCC
Confidence 357899999988744 66799999999999999971 2348998 9888764
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=2.3e-06 Score=63.38 Aligned_cols=51 Identities=20% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCCCee-eccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 72 DKSPENCSICCEDKPYPMMI-TMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~-~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.....+|+||++++.....+ .++|+|.||..|+..|+... ..||. |...+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCPI--CRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCTT--TCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCcC--cCCcCC
Confidence 34567899999998765444 45999999999999998652 37998 887764
No 39
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=1e-06 Score=61.49 Aligned_cols=46 Identities=24% Similarity=0.646 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
....++|+||++.+..+ +.++|||.||..|+.. ....||. |...+.
T Consensus 3 e~~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP--KLLPCLHTLCSGCLEA----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCC--SCSTTSCCSBTTTCSS----------SSSSCSS--CCSSSS
T ss_pred cccCCCceEeCCccCCe--EEcCCCCcccHHHHcc----------CCCCCCc--CCcEee
Confidence 34578899999988755 5579999999999866 2468998 887764
No 40
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5e-06 Score=64.48 Aligned_cols=59 Identities=22% Similarity=0.469 Sum_probs=44.8
Q ss_pred CCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCc-cCHHH
Q 016355 73 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYF-ISTVE 134 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~-i~~~~ 134 (391)
...+.|+||++.+..+ +.+ .|||.||+.|+..|+...-+. .....||..+|... +...+
T Consensus 5 ~~~~~CPI~~~~~~dP--V~~~~cGh~f~r~cI~~~l~~~~~~-~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--VKNKVCGHTYEEDAIVRMIESRQKR-KKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSE--EEESSSCCEEEHHHHHHHHHHHHTT-TCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCC--EEcCCCCCeecHHHHHHHHHHccCc-CCCCCCCcCcCcccccCHhh
Confidence 4578999999987644 677 599999999999999764221 23468999999876 65543
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.99 E-value=3.8e-06 Score=58.01 Aligned_cols=49 Identities=18% Similarity=0.588 Sum_probs=37.3
Q ss_pred CcccccccccccCCCC-eeecc-CCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYPM-MITMK-CSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~-~~~l~-C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
...+|+||++++...+ ...++ |+|.||.+|+..|+.. ...||. |...+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCcC--CCCEeE
Confidence 4568999999987543 45554 9999999999999742 237998 887653
No 42
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.96 E-value=5.7e-06 Score=63.71 Aligned_cols=51 Identities=22% Similarity=0.622 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCCCe-eeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 72 DKSPENCSICCEDKPYPMM-ITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~-~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.....+|+||++++..... ..++|+|.||..|+..|+.. .-.||. |...++
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-------SGTCPV--CRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-------TCBCTT--TCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-------CCcCcC--cCccCC
Confidence 3457789999999875443 44599999999999999842 137998 988765
No 43
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.95 E-value=3e-06 Score=70.59 Aligned_cols=46 Identities=35% Similarity=0.830 Sum_probs=36.8
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 75 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.++|+||++.+..+ +.++|||.||..|+..|+.. ...||. |...+.
T Consensus 53 ~~~C~iC~~~~~~~--~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA--VTLNCAHSFCSYCINEWMKR-------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE--EEETTSCEEEHHHHHHHTTT-------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCCc--eECCCCCCccHHHHHHHHHc-------CCcCCC--CCCcCC
Confidence 46899999987643 66799999999999998742 247998 988764
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.93 E-value=3.8e-06 Score=66.83 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=38.8
Q ss_pred CcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 74 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
..++|+||++.+..+ +.+ +|||.||..|+..|+.. ...||. |...+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLET-------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTS-------CSBCTT--TCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHh-------CCcCcC--CCccccc
Confidence 467899999988643 666 99999999999999853 158998 8887653
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.92 E-value=1.1e-05 Score=61.29 Aligned_cols=51 Identities=4% Similarity=-0.062 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
...+.|+||++-+..+ +.++|||.||+.|+..|+.. ...||. |+..+....
T Consensus 12 p~~~~CpI~~~~m~dP--V~~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP--VRLPSGTVMDRSIILRHLLN-------SPTDPF--NRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCCGGG
T ss_pred chheECcccCchhcCC--eECCCCCEECHHHHHHHHhc-------CCCCCC--CcCCCChHh
Confidence 4589999999977655 67799999999999999974 247998 888887653
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.9e-06 Score=62.85 Aligned_cols=49 Identities=27% Similarity=0.813 Sum_probs=37.7
Q ss_pred CCCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 71 GDKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
......+|+||++.+.. +.++|+|.||..|+..|+. ....||. |...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~-------~~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSD-------RHRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSC-------CCSSCHH--HHHCTT
T ss_pred cCCCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHH-------CcCcCCC--cCCccc
Confidence 34557899999998764 5669999999999999874 1357987 766554
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.88 E-value=1e-05 Score=68.38 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=39.8
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 75 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
.++|+||++.+..+ +.++|||.||..|+..++.. ....||. |...+...
T Consensus 78 ~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP--VTTECFHNVCKDCLQRSFKA------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE--EECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhhcCC--EEcCCCCchhHHHHHHHHHh------CCCcCCC--CCccCCCC
Confidence 57899999987644 56799999999999999973 2358998 99888654
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=1.5e-05 Score=63.96 Aligned_cols=53 Identities=28% Similarity=0.567 Sum_probs=38.3
Q ss_pred cccccccccccCCCC---------------ee-eccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 75 PENCSICCEDKPYPM---------------MI-TMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~---------------~~-~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
..+|+||++++.... .. .++|+|.||..|+..|+...- ......||. |...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCCC--CCCccC
Confidence 458999999985431 22 349999999999999995422 123458998 988764
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.83 E-value=1.3e-05 Score=57.95 Aligned_cols=48 Identities=33% Similarity=0.800 Sum_probs=37.6
Q ss_pred CcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
...+|+||++.+..+ ...++|||.||..|+..|+... ..||. |...+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY-SMALPCLHAFCYVCITRWIRQN-------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC-EEETTTTEEESTTHHHHHHHHS-------CSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCC-cEecCCCCeeHHHHHHHHHhCc-------CcCcC--CChhhH
Confidence 456899999987533 3556999999999999998642 37998 888764
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=8e-06 Score=74.40 Aligned_cols=56 Identities=29% Similarity=0.622 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 135 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i 135 (391)
...+.|+||++.+..+ ++. .|||.||+.|+..|+.. .....||..||...+....+
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~-----~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQG-----YTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTT-----CSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHh-----CCCCCCCcccccCcCchhhC
Confidence 4578999999988655 554 99999999999999863 12368999999998876543
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=1.7e-06 Score=69.96 Aligned_cols=46 Identities=30% Similarity=0.652 Sum_probs=38.2
Q ss_pred CcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 74 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
..++|+||++.+..+ +.+ +|||.||..|+..++. ..||. |...+..
T Consensus 21 ~~~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~---------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG---------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT---------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHhhCc--cEeCCCCCHHHHHHHHHHhc---------CCCcC--CCCcCcc
Confidence 367899999988655 667 9999999999998874 58998 9888754
No 52
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.75 E-value=7.3e-06 Score=62.46 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=38.1
Q ss_pred CCCCccccceeeecCCCcceEe-ccccceeccccccccCCCCcccccC
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTCQCAF 290 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c~C~~ 290 (391)
.+-||+|...+....+-..++| .|++.||+.|+.+|.+.|....|..
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHH
Confidence 3679999999988888888999 7999999999999954443444543
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.65 E-value=3e-05 Score=66.46 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=38.7
Q ss_pred CcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
..+.|+||++.+..+ +.+ +|||.||..|+..|+.. + ...||. |...+.
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~----~--~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRS----G--NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHT----T--CCBCTT--TCCBCC
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHh----C--cCCCCC--CCCcCC
Confidence 467999999988643 555 99999999999999962 1 357998 998874
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=4.8e-05 Score=57.09 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=36.3
Q ss_pred CcccccccccccCC------------CCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 74 SPENCSICCEDKPY------------PMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 74 ~~~~C~IC~e~~~~------------~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
...+|+||++++.. ...+.+ .|+|.|+.+|+..|+... -.||. |...+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCPL--CQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCTT--TCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCCC--cCCCcch
Confidence 45568888887743 224455 699999999999998532 27998 9887653
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.52 E-value=0.0001 Score=57.43 Aligned_cols=50 Identities=8% Similarity=-0.115 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCCeeeccCC-CcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCS-HKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~-H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
...+.|+||++-+..+ +.++|| |.||+.|+..|+.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m~dP--V~~~cG~htf~r~cI~~~l~~-------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP--VVLPSSRVTVDRSTIARHLLS-------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHTTT-------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccccCC--eECCCCCeEECHHHHHHHHHh-------CCCCCC--CCCCCChh
Confidence 4579999999987655 677999 99999999999963 237998 88888754
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.52 E-value=2.6e-05 Score=61.09 Aligned_cols=50 Identities=4% Similarity=-0.078 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
...+.|+||++-+..+ +.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 27 p~~~~CpI~~~~m~dP--V~~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP--VRLPSGTIMDRSIILRHLLN-------SPTDPF--NRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE--EEETTTEEEEHHHHHHHTTS-------CSBCSS--SCCBCCTT
T ss_pred cHhhCCcCccCcccCC--eECCCCCEEchHHHHHHHHc-------CCCCCC--CCCCCChh
Confidence 4579999999977655 66789999999999999952 247998 88887653
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.47 E-value=4.2e-05 Score=56.36 Aligned_cols=42 Identities=26% Similarity=0.757 Sum_probs=33.6
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 75 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
..+|.||++... +.+.++|||. ||..|+..+ ..||. |...+.
T Consensus 24 ~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV-----------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC-----------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC-----------ccCCC--cCcCcc
Confidence 568999999765 3456699999 999998765 48998 888764
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.36 E-value=0.00015 Score=62.83 Aligned_cols=52 Identities=8% Similarity=-0.078 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTV 133 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~ 133 (391)
....+.|+||++-+..+ +.++|||.||+.|+..|+... |. .||. |+..++..
T Consensus 103 ip~~f~CPI~~elm~DP--V~~~~Ghtfer~~I~~~l~~~---~~---tcP~--t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMREP--CITPSGITYDRKDIEEHLQRV---GH---FDPV--TRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHT---CS---BCTT--TCCBCCGG
T ss_pred CcHhhcccCccccCCCC--eECCCCCEECHHHHHHHHHhC---CC---CCCC--CcCCCChh
Confidence 35689999999977654 667999999999999999752 22 5998 88888754
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=9.2e-05 Score=54.61 Aligned_cols=42 Identities=26% Similarity=0.745 Sum_probs=32.5
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 75 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
..+|.||++.... .+.++|||. ||..|+... ..||. |...+.
T Consensus 25 ~~~C~IC~~~~~~--~~~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIA--IVFVPCGHLVTCKQCAEAV-----------DKCPM--CYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCC--BCCSSSCCCCBCHHHHHHC-----------SBCTT--TCCBCC
T ss_pred CCCCCcCCCCCCC--EEEecCCCHHHHHHHhhCC-----------CCCcc--CCceec
Confidence 5679999997653 355699999 999999531 48998 988764
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00039 Score=51.98 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCCCeeeccCC-----CcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCS-----HKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~-----H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
......|.||++++...+.+.++|. |.|..+|+.+|+... + ...||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~--~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D--TRCCEL--CKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C--CSBCSS--SCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C--CCCCCC--CCCeeec
Confidence 4456789999998865444446885 999999999999764 1 258998 9887653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.28 E-value=0.00015 Score=67.12 Aligned_cols=54 Identities=7% Similarity=-0.079 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHH
Q 016355 71 GDKSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVE 134 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~ 134 (391)
.....+.|+||++.+..+ +.++|||+||+.|+..|+... . ..||. |+..++...
T Consensus 204 ~~~~~~~c~i~~~~~~dP--v~~~~gh~f~~~~i~~~~~~~----~--~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP--CITPSGITYDRKDIEEHLQRV----G--HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE--EECSSCCEEETTHHHHHHHHT----C--SSCTT--TCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCC--eECCCCCEECHHHHHHHHHHC----C--CCCcC--CCCCCchhc
Confidence 345689999999987655 677999999999999999741 1 23998 998887543
No 62
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.27 E-value=8.9e-05 Score=55.51 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=35.3
Q ss_pred CCCCcc--ccceeeecCCCcceEe------ccccceeccccccccC
Q 016355 244 WRRCQQ--CRRMIELTHGCYHMTC------WCGHEFCYSCGAEYRD 281 (391)
Q Consensus 244 ~k~CP~--C~~~IeK~~GCnhMtC------~C~~~FCw~C~~~~~~ 281 (391)
.+-||. |+..|....+...++| .||+.||+.|+..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 588997 9999999999999999 6999999999999976
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.22 E-value=0.00014 Score=51.79 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=36.3
Q ss_pred CCcccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
....+|.||++......++.++|||. ||.+|...+... + -+||. |...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~---~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----G---ASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----T---CBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----C---CcCCC--cCchhh
Confidence 44678999999765432222399998 999999987642 1 37998 888764
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.20 E-value=9.8e-05 Score=60.36 Aligned_cols=56 Identities=25% Similarity=0.710 Sum_probs=42.9
Q ss_pred CCCcccccccccccCCC-----CeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-----MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECK 136 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-----~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~ 136 (391)
+.....|+||++.+... ..+.++|||.||..|+..|+... -.||. |...+..+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-------SBCTT--TCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-------CCCCC--CCCcCChhcce
Confidence 45678899999987531 22455999999999999999752 38998 99988776554
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.20 E-value=0.00019 Score=51.25 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=35.5
Q ss_pred CcccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
...+|.||++.....-+..++|||. ||.+|...+... .-.||. |...+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-------CCcCCC--cCcchh
Confidence 4568999999765432112399999 899999988752 137998 888764
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.14 E-value=0.00037 Score=55.04 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=37.0
Q ss_pred CcccccccccccCCC----------------CeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYP----------------MMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~----------------~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
...+|.||++.+... .+..++|+|.|+..|+..|+.. ...||. |...+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPL--DNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCSS--SCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCcC--CCCcce
Confidence 356799999987643 1334599999999999999853 247998 888754
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.14 E-value=0.00034 Score=67.61 Aligned_cols=48 Identities=25% Similarity=0.665 Sum_probs=37.9
Q ss_pred cccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 75 PENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
..+|+||++.... .+.++|||.||..|+..|... ....||. |...+..
T Consensus 332 ~~~C~ICle~~~~--pv~lpCGH~FC~~Ci~~wl~~------~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD--VKIEPCGHLMCTSCLTSWQES------EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC--EEEETTCCEECHHHHHHHHHH------TCSBCTT--TCCBCCE
T ss_pred CCCCCccCcCCCC--eEEeCCCChhhHHHHHHHHhc------CCCCCCC--CCCccCC
Confidence 4789999998753 356699999999999999863 1248998 9887754
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0008 Score=48.54 Aligned_cols=45 Identities=22% Similarity=0.829 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 72 DKSPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
......|.||++... +++.++|||. ||..|+.. .-.||. |...|.
T Consensus 12 ~~~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~-----------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKY-----------FQQCPM--CRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHH-----------CSSCTT--TCCCCC
T ss_pred CCCCCCCCCcCcCCC--CEEEECCCChhhhHHHHhc-----------CCCCCC--CCcchh
Confidence 345678999999754 3456699999 99999983 137998 888764
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.94 E-value=0.00023 Score=53.13 Aligned_cols=43 Identities=26% Similarity=0.736 Sum_probs=33.3
Q ss_pred cccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 75 PENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
..+|.||++... +.+.++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL-----------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC-----------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc-----------CcCCC--CCchhhC
Confidence 457999998764 3455699999 999998744 28998 9887753
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.37 E-value=0.00066 Score=54.50 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=0.4
Q ss_pred cccccccccccCCC--------------C--eeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 75 PENCSICCEDKPYP--------------M--MITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 75 ~~~C~IC~e~~~~~--------------~--~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.-+|.||++++... + ++.++|+|.|+..|+..|+... -.||. |...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPL--DNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-------CcCCC--CCCeee
Confidence 45899999988532 1 1223899999999999998652 37998 887654
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.91 E-value=0.0016 Score=62.35 Aligned_cols=43 Identities=23% Similarity=0.804 Sum_probs=34.2
Q ss_pred CcccccccccccCCCCeeeccCCCc-ccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 74 SPENCSICCEDKPYPMMITMKCSHK-FCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 74 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
...+|+||++... +.+.++|||. ||..|+..+ ..||. |...+.
T Consensus 294 ~~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~-----------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL-----------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC-----------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC-----------CcCCC--CCCCcc
Confidence 3578999999775 3466699999 999998754 38998 988764
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.73 E-value=0.014 Score=42.63 Aligned_cols=51 Identities=20% Similarity=0.526 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 72 DKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.....+|.||++.+... ..+ .|+|.|-..|+.+|+++. + .-.||. |+..+.
T Consensus 12 ~~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~---~--~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN---A--EPRCPH--CNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTC---S--SCCCTT--TCSCCC
T ss_pred cCCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhc---C--CCCCCC--CcCcCC
Confidence 34567899999998744 445 999999999999999642 1 147998 887664
No 73
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.66 E-value=0.039 Score=40.20 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=49.0
Q ss_pred CCCcccccccccccCCCCeeec--cCCCcccHHHHHHHHHHHhhCCCcccccCC-CccCC-------ccCHHHHHhhCCh
Q 016355 72 DKSPENCSICCEDKPYPMMITM--KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQ-LRCKY-------FISTVECKSFLPL 141 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~~~~~l--~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~-~~C~~-------~i~~~~i~~~l~~ 141 (391)
+....-|.+|-+......++.+ .=.|.||+.|-+.+|+.+-.. ..+.||. ..|.. .+-..+|..+|+.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~--~EvyCPSG~kCpL~gS~~PWAFmqgEIatILg~ 89 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGAT--GEVYCPSGEKCPLVGSNVPWAFMQGEIATILSG 89 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSS--SCCCCTTSSCCBCSSSSSBCCCCHHHHHHHHSC
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCC--CcEECCCCCccccCCCcCchHHHhhHHHHHhcc
Confidence 5678899999999888888777 347999999999999987433 3456765 23432 2345666666654
Q ss_pred h
Q 016355 142 S 142 (391)
Q Consensus 142 ~ 142 (391)
+
T Consensus 90 ~ 90 (93)
T 2cs3_A 90 P 90 (93)
T ss_dssp S
T ss_pred c
Confidence 3
No 74
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.36 E-value=0.011 Score=41.43 Aligned_cols=39 Identities=26% Similarity=0.721 Sum_probs=31.5
Q ss_pred CCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCC--CCcccccccccCC
Q 016355 159 SDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPV--CERFICVECGVPW 211 (391)
Q Consensus 159 ~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~--C~~~fC~~C~~~~ 211 (391)
.+.+.|| .|...+++. ..-+.++|.. |+..||+.|..+|
T Consensus 4 ~~~k~CP--~C~~~Iek~------------~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKD------------GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCCT--TTCCCCSSC------------CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ccceECc--CCCCeeEeC------------CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 3456788 699999882 2456788987 9999999999988
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.88 E-value=0.021 Score=43.86 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=30.7
Q ss_pred cccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 77 NCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 77 ~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
-|.+|- +|...-.++ +|.|.||.+|...+.+..- =.||. |...+.
T Consensus 3 fC~~C~--~Pi~iygRmIPCkHvFCydCa~~~~~~~~------k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCG--LPIKVYGRMIPCKHVFCYDCAILHEKKGD------KMCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTC--SBCSEEEEEETTCCEEEHHHHHHHHHTTC------CBCTT--TCCBCS
T ss_pred ecCccC--CCeEEEeeeccccccHHHHHHHHHHhccC------CCCcC--cCCeee
Confidence 477774 444444566 9999999999998875321 15776 777653
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.76 E-value=0.048 Score=38.00 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCCeeecc--CCC---cccHHHHHHHHHHHhhCCCcccccCCCccCCccC
Q 016355 73 KSPENCSICCEDKPYPMMITMK--CSH---KFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIS 131 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~--C~H---~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~ 131 (391)
.....|.||+++... .++ .+ |.| .|-.+|+..|+..+- ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~~-~l~-~PC~C~gs~~~~H~~Cl~~W~~~~~-----~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-ERF-RACGCTGELENVHRSCLSTWLTISR-----NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC-CCC-CSCCCSSGGGSCCHHHHHHHHHHHT-----CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCCC-cee-cCcCCCCchhhhHHHHHHHHHHhCC-----CCccCC--CCCeee
Confidence 456689999998543 332 35 555 899999999997642 258998 887764
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.67 E-value=0.036 Score=52.34 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=41.6
Q ss_pred CCcccccccccccCC-CCee-----eccCCCcccHHHHHHHHHHHhhCCC----cccccCCCccCCccCH
Q 016355 73 KSPENCSICCEDKPY-PMMI-----TMKCSHKFCSHCMRTYIDGKVQSSQ----VPIRCPQLRCKYFIST 132 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~-~~~~-----~l~C~H~fC~~Cl~~~i~~~i~~g~----~~i~CP~~~C~~~i~~ 132 (391)
....+|+|||+.+.. ..+. ...|+|.|...|+..|+.+.-+..+ ..=.||. |+..|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 456799999998765 2221 2279999999999999987543222 1237998 9998763
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.04 E-value=0.036 Score=38.75 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=37.4
Q ss_pred cccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHH
Q 016355 75 PENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVEC 135 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i 135 (391)
.+.|+|+++....+ +.. .+||.|++.|+..|+... | +||. .+..+..+++
T Consensus 3 ~~~CpIs~~~m~dP--V~~~~sG~~yer~~I~~~l~~~---~----~cP~--t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP--VLSPKSRTIFEKSLLEQYVKDT---G----NDPI--TNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE--EEETTTTEEEEHHHHHHHHHHH---S----BCTT--TCCBCCGGGC
T ss_pred eEEecCCCCCCCCC--EEeCCCCcEEcHHHHHHHHHhC---C----CCcC--CcCCCChhhc
Confidence 47899999977644 556 899999999999999752 2 4888 6666665543
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.75 E-value=0.055 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.659 Sum_probs=25.4
Q ss_pred cccccccccccCCCCeee-ccCCCcccHHHHHHH
Q 016355 75 PENCSICCEDKPYPMMIT-MKCSHKFCSHCMRTY 107 (391)
Q Consensus 75 ~~~C~IC~e~~~~~~~~~-l~C~H~fC~~Cl~~~ 107 (391)
...|.||.+++..+.+.. +.|+|.||..|++.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 468999998754344444 599999999999973
No 80
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.84 E-value=0.14 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=28.8
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~ 283 (391)
-.||-|...+. +-++| .|||.||+.|...|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHC
Confidence 58999998886 46787 999999999999996544
No 81
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=86.13 E-value=0.28 Score=33.39 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=20.8
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
+.||+|+..+.-...-+.++| +||+.+
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 899999985543344579999 999875
No 82
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=85.80 E-value=0.2 Score=33.46 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=29.2
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCCc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQT 285 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~ 285 (391)
..||-|...+.... ..++- .|||.||..|...|-.....
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~~~ 45 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSHST 45 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTCCS
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcCCc
Confidence 57999988876544 23445 59999999999999866543
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=85.75 E-value=0.59 Score=34.40 Aligned_cols=34 Identities=21% Similarity=0.629 Sum_probs=28.3
Q ss_pred CCCccccceeeecCCCcceEe-cccc-----ceecccccccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGH-----EFCYSCGAEYR 280 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~-----~FCw~C~~~~~ 280 (391)
..||.|+..++.++| +..| .|+. -||-.|++++.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHH
Confidence 579999999999888 6679 8874 38999998885
No 84
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=85.67 E-value=0.58 Score=34.72 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=25.2
Q ss_pred CCCccccceeeecCCCcceEe-cccccee
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFC 272 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FC 272 (391)
..||.|+....+..+=..+.| .||+.|-
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 699999999999999889999 8988764
No 85
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=85.37 E-value=0.96 Score=40.61 Aligned_cols=51 Identities=20% Similarity=0.521 Sum_probs=39.4
Q ss_pred CCcccccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 73 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
+...+|.||.+-.... ..+ .|+|.|...|+..|+.+ .....||. |+..++.
T Consensus 178 ~~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~-----~~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQS-----NAEPRCPH--CNDYWPH 229 (238)
T ss_dssp TTCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTT-----CSSCBCTT--TCCBCCS
T ss_pred CCCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHh-----CCCCCCCC--CCCCCCC
Confidence 3577899999987754 566 69999999999999853 22358997 9887654
No 86
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.28 E-value=0.21 Score=34.60 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=26.4
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHH
Confidence 689999987763 45559999999999999975
No 87
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.80 E-value=0.34 Score=34.42 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=26.4
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
..||-|...+. +-++-.|||.||+.|...|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 68999998776 344459999999999999975
No 88
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.74 E-value=0.3 Score=34.72 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=28.1
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.. -++-.|||.||+.|...|-..+..|
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~~C 52 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLGKRC 52 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCSSBC
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCCCcC
Confidence 689999877643 2555999999999999997655433
No 89
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.73 E-value=0.38 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCCccccceeeecCCCcceEe-ccccce
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
.+.||+|+..+.-...=+.+.| .||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3899999974433222278999 999754
No 90
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.46 E-value=0.82 Score=30.22 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCCCccccc-eeeecCCCcceEe-ccccce
Q 016355 244 WRRCQQCRR-MIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~-~IeK~~GCnhMtC-~C~~~F 271 (391)
...||.|+. .++-+..=..+.| .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 368999998 8888777778999 888755
No 91
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=84.23 E-value=0.33 Score=39.59 Aligned_cols=37 Identities=27% Similarity=0.617 Sum_probs=29.3
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
-.||-|...+. +-++-.|||.||..|...|-.....|
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~~~~~~C 90 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWMKRKIEC 90 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHTTTCSBC
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHHHcCCcC
Confidence 47999998774 23556999999999999998766554
No 92
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=83.43 E-value=0.31 Score=37.81 Aligned_cols=37 Identities=27% Similarity=0.561 Sum_probs=30.3
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c 286 (391)
-.||-|...+. +-++. .|||.||+.|...|-..+..|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~~~C 53 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLETSKYC 53 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHTSCSBC
T ss_pred CCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHHhCCcC
Confidence 68999998875 36777 999999999999997665444
No 93
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=83.02 E-value=0.25 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=26.8
Q ss_pred CCCccccceeeecCCCcceEec-cccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~-C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+. +-++-. |||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHHh
Confidence 58999988775 346666 9999999999999753
No 94
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=82.39 E-value=0.33 Score=36.99 Aligned_cols=37 Identities=24% Similarity=0.674 Sum_probs=29.7
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c 286 (391)
-.||-|...+.. -++. .|||.||+.|...|-..+..|
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~C 60 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYKTQC 60 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTCCBC
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCCCCC
Confidence 589999987753 5677 899999999999998765444
No 95
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.18 E-value=0.46 Score=33.48 Aligned_cols=36 Identities=25% Similarity=0.635 Sum_probs=28.0
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.. ++=.|||.||+.|...|......|
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~~~~C 51 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWSDRHRNC 51 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSSCCCSSC
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHHHCcCcC
Confidence 689999887653 445999999999999997654444
No 96
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.94 E-value=0.78 Score=32.64 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCCCccccceeeecCCCcceEe-ccccce
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
+-.||.|+.+.+-+.+.+.++| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3689999999999988899999 777655
No 97
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=80.33 E-value=0.42 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.638 Sum_probs=25.6
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
..||-|.-++... .-..+.|.|||.||..|+..+..
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~ 47 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRT 47 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTT
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHHHh
Confidence 6899999977432 22334467999999999888653
No 98
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=80.12 E-value=0.47 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=26.4
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHh
Confidence 579999887743 344589999999999998765
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.04 E-value=0.64 Score=32.08 Aligned_cols=22 Identities=45% Similarity=0.995 Sum_probs=18.7
Q ss_pred eeCCCCCcccccccccCCCCCC
Q 016355 194 VECPVCERFICVECGVPWHSSL 215 (391)
Q Consensus 194 v~C~~C~~~fC~~C~~~~H~~~ 215 (391)
..|+.|+..||..|..-.|...
T Consensus 31 y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 31 YVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp ECCTTTTCCBCHHHHHTTTTTS
T ss_pred EECCccCcCcccchhHHHHhhc
Confidence 5699999999999988878653
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=79.65 E-value=0.22 Score=35.19 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=29.8
Q ss_pred CCCccccceeeec-CCCcceEe-ccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELT-HGCYHMTC-WCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~-~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+... ++=..+.- .|||.||+.|...|-.....|
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C 54 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC 54 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCC
Confidence 6899999887653 22233344 999999999999996544433
No 101
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.45 E-value=0.27 Score=35.11 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=26.5
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~ 283 (391)
..||-|...+.. -++- .|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~ 50 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYS 50 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHC
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcC
Confidence 689999887764 4666 899999999998886443
No 102
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=79.38 E-value=0.29 Score=36.70 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=25.9
Q ss_pred CCCccccceeeecCCCcceEec-cccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCW-CGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~-C~~~FCw~C~~~~~~ 281 (391)
-.||-|...+. +-++-. |||.||+.|...|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHHH
Confidence 58999998775 346666 999999999998853
No 103
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=79.02 E-value=0.38 Score=33.84 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.... ..+.-.|||.||+.|...|-..+..|
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~C 54 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITNKKC 54 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHCSBC
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 68999988775322 22333899999999999996544443
No 104
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.96 E-value=0.39 Score=32.32 Aligned_cols=32 Identities=25% Similarity=0.745 Sum_probs=25.5
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
..||-|...+... ++-.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHHHH
Confidence 6899999887542 3348999999999999943
No 105
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=78.81 E-value=1.7 Score=32.88 Aligned_cols=35 Identities=29% Similarity=0.820 Sum_probs=30.3
Q ss_pred CCCccccceeeecCCCcceEe-ccccc-----eeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHE-----FCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~-----FCw~C~~~~~~ 281 (391)
..||.|+..++.++| +.+| .|+.. ||-.|++++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 799999999999988 7789 99864 69999998863
No 106
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.74 E-value=0.39 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
..||-|...+.....- -+.-.|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 16 LECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLLAS 52 (88)
T ss_dssp CBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHHHH
T ss_pred CCCccCCccccccCCC-eEECCCCChhhHHHHHHHHHc
Confidence 6899999887654221 233389999999999999643
No 107
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.68 E-value=0.84 Score=32.83 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=28.0
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.... .-+.-.|||.||+.|...|-.....|
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~C 55 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQHDSC 55 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTTCSC
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcCCcC
Confidence 68999988775432 11222799999999999997655443
No 108
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=78.40 E-value=0.42 Score=33.42 Aligned_cols=37 Identities=30% Similarity=0.617 Sum_probs=26.7
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.. ...- .|||.||+.|...|-..+..|
T Consensus 6 ~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~~~~~C 43 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIRQNPTC 43 (68)
T ss_dssp CCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHHHSCST
T ss_pred CCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHhCcCcC
Confidence 689999887752 2344 899999999999886544333
No 109
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.36 E-value=0.51 Score=31.36 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=27.4
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~ 283 (391)
..||-|...+...+ ..+.- .|||.||+.|...|-...
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHHHT
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHHcC
Confidence 67999988775322 33555 899999999999996544
No 110
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.14 E-value=0.45 Score=34.16 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=27.9
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQ 284 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~ 284 (391)
..||-|...+.... .+.. .|||.||+.|...|-....
T Consensus 24 ~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~~ 61 (75)
T 1x4j_A 24 TLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKANR 61 (75)
T ss_dssp CEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHHCS
T ss_pred CCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHcCC
Confidence 67999998776543 3444 8999999999999965443
No 111
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=77.10 E-value=0.54 Score=35.28 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+.... ..++-.|||.||+.|...|-.....|
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~~~C 80 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKSGTC 80 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTTCBC
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcCCcC
Confidence 57999988776433 22333899999999999997655444
No 112
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=76.60 E-value=0.79 Score=35.07 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=14.5
Q ss_pred CCCccccceeeec---CCCcceEe-cc
Q 016355 245 RRCQQCRRMIELT---HGCYHMTC-WC 267 (391)
Q Consensus 245 k~CP~C~~~IeK~---~GCnhMtC-~C 267 (391)
.-||+|..||.-- -=|+|+.| .|
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydC 28 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDC 28 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHH
T ss_pred eecCccCCCeEEEeeeccccccHHHHH
Confidence 4699999999532 23555555 44
No 113
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=76.57 E-value=0.59 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=25.8
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
-.||-|...+. +-++-.|||.||..|...|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHHh
Confidence 58999998776 335559999999999988865
No 114
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.56 E-value=0.34 Score=34.60 Aligned_cols=40 Identities=20% Similarity=0.486 Sum_probs=28.9
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
..||-|...+..... .+...|||.||+.|...|-.....|
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~~~~~C 55 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLEVRKVC 55 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHHHCSBC
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHHcCCcC
Confidence 689999988765432 2333899999999999997544433
No 115
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=76.08 E-value=1.3 Score=31.08 Aligned_cols=35 Identities=31% Similarity=0.760 Sum_probs=26.9
Q ss_pred CCCCcccccccccccCCCCeeec-cC-CCcccHHHHHHHHH
Q 016355 71 GDKSPENCSICCEDKPYPMMITM-KC-SHKFCSHCMRTYID 109 (391)
Q Consensus 71 ~~~~~~~C~IC~e~~~~~~~~~l-~C-~H~fC~~Cl~~~i~ 109 (391)
++....-|.||.++-. +.+ .| +-.||..||+..-.
T Consensus 4 ~~ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 4 GSSGLPWCCICNEDAT----LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp SCCCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHTT
T ss_pred cCcCCCeeEEeCCCCe----EEecCCCCceehHHHHHHHcc
Confidence 3455678999999832 455 89 78999999998773
No 116
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=75.91 E-value=0.58 Score=39.28 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=27.9
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+. +-++. .|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeCCCCChhHHHHHHHHHHh
Confidence 48999998876 35777 99999999999999654
No 117
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.57 E-value=0.34 Score=33.89 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCccccceeeecCCC-cc-eEeccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGC-YH-MTCWCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GC-nh-MtC~C~~~FCw~C~~~~~~~~ 283 (391)
..||-|...+.....- .. +.-.|||.||..|...|-...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 56 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 56 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC
Confidence 6899999887654221 22 333899999999999996543
No 118
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=75.43 E-value=0.39 Score=33.02 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCccccceeeecC-CCcceEe-ccccceeccccccccCCCC
Q 016355 245 RRCQQCRRMIELTH-GCYHMTC-WCGHEFCYSCGAEYRDGQQ 284 (391)
Q Consensus 245 k~CP~C~~~IeK~~-GCnhMtC-~C~~~FCw~C~~~~~~~~~ 284 (391)
..||-|...+.... +=..+.- .|||.||..|...|-....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~ 45 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN 45 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC
Confidence 57888888776541 2223333 9999999999999865433
No 119
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.59 E-value=0.69 Score=32.18 Aligned_cols=32 Identities=31% Similarity=0.716 Sum_probs=25.3
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHH
Confidence 679999887753 23338999999999999974
No 120
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.59 E-value=0.48 Score=34.52 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=27.6
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCCCcc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
-.||-|...+.. .++-.|||.||+.|...|......|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~C 52 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRATPRC 52 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHHCSBC
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHCCCcC
Confidence 589999988743 3445899999999999987544333
No 121
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=74.41 E-value=0.92 Score=32.63 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=26.9
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++-.|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTT
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHH
Confidence 589999987752 455699999999999999765
No 122
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=73.78 E-value=1.3 Score=31.89 Aligned_cols=28 Identities=39% Similarity=0.903 Sum_probs=23.6
Q ss_pred CCCccccceeeecCCCcceEeccccceecccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCG 276 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~ 276 (391)
.+|..|+..+...+ +.|+||..||-.=+
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~HR 53 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGLHR 53 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSSSC
T ss_pred CcChhhCCcccccC----eecCCCCEechhcC
Confidence 58999999988764 89999999997644
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.73 E-value=3.2 Score=33.22 Aligned_cols=36 Identities=22% Similarity=0.552 Sum_probs=26.5
Q ss_pred CCCcccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 107 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~~ 107 (391)
+.....|.+|...|... .-..+ .||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 44566899999988633 33456 89999999996543
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.76 E-value=1.4 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCCcceEeccccceeccccccccCCCCcc
Q 016355 258 HGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 258 ~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
+.+..+.-.|||.|+..|...|-.....|
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~C 67 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVKQNNRC 67 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTTTCCBC
T ss_pred CceEEEeCCCCCccChHHHHHHHHhCCCC
Confidence 44444555899999999999997765543
No 125
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=70.42 E-value=1.7 Score=30.38 Aligned_cols=28 Identities=43% Similarity=0.983 Sum_probs=23.3
Q ss_pred CCCccccceeeecCCCcceEeccccceecccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCG 276 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~ 276 (391)
.+|..|+..+... -++|+||..||-.-.
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HR 43 (64)
T 1wfh_A 16 NRCTVCRKRVGLT----GFMCRCGTTFCGSHR 43 (64)
T ss_dssp CCCTTTCCCCCTT----CEECSSSCEECTTTC
T ss_pred CcChhhCCccCcc----CEEeecCCEeccccC
Confidence 7899999888766 489999999997654
No 126
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.35 E-value=8.6 Score=28.57 Aligned_cols=50 Identities=22% Similarity=0.558 Sum_probs=35.5
Q ss_pred CCcccccccccccCC----CCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCcc
Q 016355 73 KSPENCSICCEDKPY----PMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 130 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~----~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i 130 (391)
.....|.||-+++-. +.++.+ .|+-..|+.|+.--. ++|.. .||. |+..+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG~q--~Cpq--CktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REGTQ--NCPQ--CKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTSCS--SCTT--TCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hccCc--cccc--cCCcc
Confidence 345789999998642 234444 899999999986443 45655 6988 88765
No 127
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=69.81 E-value=1.9 Score=33.60 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=26.0
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++=.|||.||..|...|-..
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCT
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhH
Confidence 479999977752 233399999999999999865
No 128
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=69.38 E-value=0.99 Score=32.75 Aligned_cols=32 Identities=22% Similarity=0.609 Sum_probs=25.6
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
-.||-|...+.. -++-.|||.||+.|...|-.
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHH
Confidence 589999887753 34568999999999998854
No 129
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.29 E-value=2.6 Score=34.20 Aligned_cols=31 Identities=19% Similarity=0.625 Sum_probs=23.2
Q ss_pred CcccccccccccCC--CCeeec-cCCCcccHHHH
Q 016355 74 SPENCSICCEDKPY--PMMITM-KCSHKFCSHCM 104 (391)
Q Consensus 74 ~~~~C~IC~e~~~~--~~~~~l-~C~H~fC~~Cl 104 (391)
....|.+|..++.. +.-..+ .|.|.+|..|-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 46789999999842 333444 99999999883
No 130
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=69.13 E-value=1 Score=36.90 Aligned_cols=34 Identities=26% Similarity=0.667 Sum_probs=27.5
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~ 283 (391)
-.||-|...+.. -++..|||.||..|...|-..+
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~~~ 65 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASILSSG 65 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGGGS
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHHHhcC
Confidence 589999987753 3667999999999999996533
No 131
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.33 E-value=1.9 Score=30.08 Aligned_cols=28 Identities=32% Similarity=0.847 Sum_probs=22.8
Q ss_pred CCCccccceeeecCCCcceEeccccceecccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCG 276 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~ 276 (391)
.+|..|+..+... -++|+||..||-.-.
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HR 43 (64)
T 1wg2_A 16 NRCFSCNKKVGVM----GFKCKCGSTFCGSHR 43 (64)
T ss_dssp CSCTTTCCCCTTS----CEECTTSCEECSSSC
T ss_pred CcChhhCCccccc----CeEeecCCEecccCC
Confidence 6899999887655 489999999997654
No 132
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=66.95 E-value=3.2 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
-.||.|+.+.+-+.+=+.++| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 589999999988776677888 676554
No 133
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.80 E-value=1.2 Score=35.01 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=26.5
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++..|||.||+.|...|-..
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRD 51 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhh
Confidence 589999988753 355699999999999998643
No 134
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=66.57 E-value=3.5 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCCccccceeeecCCCcceEe-ccccce
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
+-.||.|+.+.+-+.+=..++| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 3689999999998876677888 776655
No 135
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.92 E-value=1.1 Score=32.54 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=24.7
Q ss_pred CCCccccceeeecCCCcceEeccccceecccccccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYR 280 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~ 280 (391)
-.||-|...+.. -++-.|||.||..|...|-
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTANH 50 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHH
Confidence 689999988753 2334899999999999884
No 136
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=65.68 E-value=3.7 Score=29.15 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
-.||.|+.+.+-..+=+.+.| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 689999999987766667888 776554
No 137
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.85 E-value=4.2 Score=31.72 Aligned_cols=32 Identities=25% Similarity=0.682 Sum_probs=26.1
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~ 281 (391)
-.||-|...+. +-++- .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeCCCCCHHHHHHHHHHhc
Confidence 68999998775 23454 8999999999999975
No 138
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.68 E-value=3.1 Score=30.80 Aligned_cols=29 Identities=31% Similarity=0.819 Sum_probs=23.1
Q ss_pred CCCccccceeeecCCCcceEeccccceecccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCG 276 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~ 276 (391)
.+|..|+..+-.. +-++|+||..||-.=.
T Consensus 26 ~rC~~C~kkvgl~---~~f~CrCg~~FC~~HR 54 (85)
T 1wff_A 26 KHCFLCGKKTGLA---TSFECRCGNNFCASHR 54 (85)
T ss_dssp CBCSSSCCBCSSS---SCEECTTCCEECTTTC
T ss_pred ccchhhCCeeccc---CCeEcCCCCEecccCC
Confidence 6899999877654 3499999999997544
No 139
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.01 E-value=1.5 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=25.7
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 54 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQ 54 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHS
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHh
Confidence 589999987742 233489999999999998653
No 140
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=61.27 E-value=3.5 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=24.9
Q ss_pred CCCccccceeeecCCCcceEe-cccc--ceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGH--EFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~--~FCw~C~~~~~~~ 282 (391)
-.||.|+.++++ | .||+ .||-.|++-+++.
T Consensus 32 afCPeCgq~Le~--------lkACGA~~yFC~~C~~LiSkk 64 (81)
T 2jrp_A 32 ALCPDCRQPLQV--------LKACGAVDYFCQNGHGLISKK 64 (81)
T ss_dssp EECSSSCSCCCE--------EEETTEEEECCTTTTCCCCTT
T ss_pred ccCcchhhHHHH--------HHhcCCcCeeeccCCCEeecc
Confidence 389999999998 7 7874 6999999888753
No 141
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=60.25 E-value=5 Score=31.41 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCCccccceeeec----CCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELT----HGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~----~GCnhMtC-~C~~~F 271 (391)
+-||.|+.++.-. .|.+.+.| .|+|.+
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 7899999877543 36889999 999977
No 142
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.00 E-value=3.2 Score=29.81 Aligned_cols=28 Identities=32% Similarity=0.904 Sum_probs=22.9
Q ss_pred CCCccccceeeecCCCcceEeccccceecccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCG 276 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~ 276 (391)
.+|..|+..+... -+.|+||..||-.=.
T Consensus 26 ~RC~~C~kkvgL~----~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 26 TRCLSCNKKVGVT----GFKCRCGSTFCGTHR 53 (74)
T ss_dssp CBCSSSCCBCTTT----CEECTTSCEECTTTC
T ss_pred ccchhhcCccccc----ceEeccCCEeccccC
Confidence 6899999887766 489999999997544
No 143
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=59.17 E-value=4.6 Score=32.09 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCCccccceeeec----CCCcceEe-ccccce
Q 016355 244 WRRCQQCRRMIELT----HGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~~IeK~----~GCnhMtC-~C~~~F 271 (391)
.+-||.|+.++.-. .+-+.+.| .|||.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 47899999877633 67899999 999976
No 144
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.06 E-value=2.3 Score=33.19 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=26.5
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhH
Confidence 589999988753 355599999999999998654
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=58.84 E-value=9.7 Score=31.50 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=23.7
Q ss_pred CcccccccccccC--CCCeeec-cCCCcccHHHH
Q 016355 74 SPENCSICCEDKP--YPMMITM-KCSHKFCSHCM 104 (391)
Q Consensus 74 ~~~~C~IC~e~~~--~~~~~~l-~C~H~fC~~Cl 104 (391)
....|.+|..++. .+.-..+ .|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999863 2333445 99999999996
No 146
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=58.68 E-value=2 Score=33.97 Aligned_cols=30 Identities=23% Similarity=0.599 Sum_probs=0.0
Q ss_pred cCCCcceEeccccceeccccccccCCCCcc
Q 016355 257 THGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 257 ~~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
.+.|.-+.-.|+|.|+..|...|-.....|
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~C 103 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKTRQVC 103 (117)
T ss_dssp ------------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHcCCcC
Confidence 456777777999999999999997654443
No 147
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=58.49 E-value=5.7 Score=28.00 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=22.1
Q ss_pred CCCCccccceeeecCCCcceEe-ccccce
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
+-.||.|+.+.+-+..=+.+.| .||..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 3689999999988766667888 776655
No 148
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=58.17 E-value=3.8 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=23.2
Q ss_pred cCCCCCccccceeeec----CCCcceEe-ccccce
Q 016355 242 KRWRRCQQCRRMIELT----HGCYHMTC-WCGHEF 271 (391)
Q Consensus 242 ~~~k~CP~C~~~IeK~----~GCnhMtC-~C~~~F 271 (391)
...+-||.|+.+..-. .|.+.+.| .|+|.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3459999999876332 36889999 899976
No 149
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.03 E-value=5.6 Score=29.56 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=28.3
Q ss_pred CCeeeCCCCCcccccccccCCCCCCCchhHhcCcccccChhHHHHHHHHhccCCCCCccccceeeecCCCc
Q 016355 191 NSCVECPVCERFICVECGVPWHSSLSCEEYQNLPLEERDAGDITLHRLAQNKRWRRCQQCRRMIELTHGCY 261 (391)
Q Consensus 191 ~~~v~C~~C~~~fC~~C~~~~H~~~sC~e~~~~~~~~~~~~~~~~~~l~~~~~~k~CP~C~~~IeK~~GCn 261 (391)
...+.|..|++..|..| -+|. .+.+.+.||+|++...+..|+-
T Consensus 33 e~FVAC~eC~FPvCrpC----------yEYE------------------rkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 33 DLFVACNECGFPACRPC----------YEYE------------------RREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SBCCSCSSSCCCCCHHH----------HHHH------------------HHTSCSSCTTTCCCCCCCTTCC
T ss_pred CEEEeeeccCChhhHHH----------HHHH------------------HhccCccccccCCccccccCCC
Confidence 35577888888888755 3332 1223389999999987655553
No 150
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=57.43 E-value=2.3 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=26.9
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
-.||-|...+.. -+++.||+.||..|...|-.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHH
Confidence 589999988763 37789999999999999864
No 151
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=56.77 E-value=2.4 Score=35.02 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=26.4
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQ 283 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~~ 283 (391)
-.||-|...+. +-++-.|||.||+.|...|-..+
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHHHHhC
Confidence 58999988774 34455899999999999887543
No 152
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=55.45 E-value=3.7 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=22.1
Q ss_pred CCCcceEeccccceeccccccccCCCCcc
Q 016355 258 HGCYHMTCWCGHEFCYSCGAEYRDGQQTC 286 (391)
Q Consensus 258 ~GCnhMtC~C~~~FCw~C~~~~~~~~~~c 286 (391)
++|.-+.-.|+|.|+..|...|-.....|
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~C 92 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKTRQVC 92 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTTCSBC
T ss_pred ccceEeecccCcEECHHHHHHHHHcCCcC
Confidence 56666666999999999999997665443
No 153
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.06 E-value=6.2 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=22.4
Q ss_pred ccccccccccCCCCeeec-cCCCcccHHH
Q 016355 76 ENCSICCEDKPYPMMITM-KCSHKFCSHC 103 (391)
Q Consensus 76 ~~C~IC~e~~~~~~~~~l-~C~H~fC~~C 103 (391)
..|.-|...++....+.. .|++.||.+|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccch
Confidence 359899888865544667 9999999999
No 154
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=54.66 E-value=5.8 Score=32.82 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCCcc--ccceeeecCCCcceEe-ccccceec
Q 016355 245 RRCQQ--CRRMIELTHGCYHMTC-WCGHEFCY 273 (391)
Q Consensus 245 k~CP~--C~~~IeK~~GCnhMtC-~C~~~FCw 273 (391)
+.||+ |+.-+.-..-=+..+| +||+-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 89999 9987665544478999 99998875
No 155
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=54.21 E-value=3.2 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCCccccceeeecCCC------------cceEe-ccccceecccccccc
Q 016355 245 RRCQQCRRMIELTHGC------------YHMTC-WCGHEFCYSCGAEYR 280 (391)
Q Consensus 245 k~CP~C~~~IeK~~GC------------nhMtC-~C~~~FCw~C~~~~~ 280 (391)
..||-|...++...+. ....- .|||.||..|+..|-
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 4799998887654321 12224 799999999999986
No 156
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.40 E-value=10 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=18.2
Q ss_pred CCCccccc-eeeecCCCcceEe-ccccc
Q 016355 245 RRCQQCRR-MIELTHGCYHMTC-WCGHE 270 (391)
Q Consensus 245 k~CP~C~~-~IeK~~GCnhMtC-~C~~~ 270 (391)
..||.|+. .|..+.-=.-+.| .||.-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 58999986 5666655556777 77653
No 157
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.68 E-value=62 Score=26.24 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=37.5
Q ss_pred CCCCCcccccccccccCCCCeeec-cCCCcccHHHHHHHHH----HHh--hCCCcccccCCCccCCc
Q 016355 70 QGDKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYID----GKV--QSSQVPIRCPQLRCKYF 129 (391)
Q Consensus 70 ~~~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~----~~i--~~g~~~i~CP~~~C~~~ 129 (391)
..+.....|.+|.+. .+++-. .|...||..|+..-+. ..| .+|.+ .||. |...
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W--~C~~--C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQW--YCYI--CHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCC--CCTT--TCCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCC--Eeec--ccCc
Confidence 345667889999864 456666 9999999999997663 223 35555 6887 6643
No 158
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=50.18 E-value=7.1 Score=33.16 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=20.9
Q ss_pred CCCccccceeeecCCCcceEe-ccccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHE 270 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~ 270 (391)
-.|++|+.+..+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 58999999998876 99999 99864
No 159
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.04 E-value=21 Score=27.54 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=35.0
Q ss_pred Cccccccccccc------CCCCeeec-cCCCcccHHHHH--HHHHHHhhCCCcccccCCCccC
Q 016355 74 SPENCSICCEDK------PYPMMITM-KCSHKFCSHCMR--TYIDGKVQSSQVPIRCPQLRCK 127 (391)
Q Consensus 74 ~~~~C~IC~e~~------~~~~~~~l-~C~H~fC~~Cl~--~~i~~~i~~g~~~i~CP~~~C~ 127 (391)
+...|.+|..+. ..++++.. .|+..|...|+. .-+...+..+.+ .||. |.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W--~C~~--C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRW--QCIE--CK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCC--CCTT--TC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcccc--cccc--CC
Confidence 456799998763 33467777 999999999995 234445666655 6887 54
No 160
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=48.90 E-value=14 Score=26.11 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCCCCccccceeeecCCCcceEeccccc-eeccccccc
Q 016355 232 DITLHRLAQNKRWRRCQQCRRMIELTHGCYHMTCWCGHE-FCYSCGAEY 279 (391)
Q Consensus 232 ~~~~~~l~~~~~~k~CP~C~~~IeK~~GCnhMtC~C~~~-FCw~C~~~~ 279 (391)
++.+..+... ..||-|..... +-++=+|||. ||+.|...|
T Consensus 15 ~~~~~~~~~~---~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 15 EEQLRRLQEE---KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HHHHHHHHHH---TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTC
T ss_pred HHHHhcCccC---CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcC
Confidence 3344444444 68999987653 2233389999 999999888
No 161
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=48.34 E-value=4.8 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=17.9
Q ss_pred CCCCccccceeeecCCCcceEe-cccc
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGH 269 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~ 269 (391)
.-.|++|+..++...+ .-+.| .||+
T Consensus 28 ~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEECCCCCCcceeCCC-CCccCCCCCc
Confidence 3589999999877644 55667 6665
No 162
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=48.28 E-value=8.2 Score=33.15 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=20.2
Q ss_pred CCCccccce-eeecCCCcceEe-ccccceec
Q 016355 245 RRCQQCRRM-IELTHGCYHMTC-WCGHEFCY 273 (391)
Q Consensus 245 k~CP~C~~~-IeK~~GCnhMtC-~C~~~FCw 273 (391)
+.||+|+.. +.-+..+.| +| +|++-|.+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 899999965 444556655 88 88887743
No 163
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.92 E-value=8.2 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=20.3
Q ss_pred CCCccccce------eeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRM------IELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~------IeK~~GCnhMtC-~C~~~F 271 (391)
-.||.|+.. |.|..|=-+++| .||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 589999875 345677778888 788766
No 164
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.98 E-value=9 Score=36.76 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=25.0
Q ss_pred CCCCccccceeeecCCCcceEeccccceeccccccccC
Q 016355 244 WRRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRD 281 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~ 281 (391)
...||-|..... +-+.=+|||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh
Confidence 368999977663 223339999999999999865
No 165
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.82 E-value=5.1 Score=27.41 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=21.7
Q ss_pred CCCccccc-eeeecCCCcceEeccccceeccccccc
Q 016355 245 RRCQQCRR-MIELTHGCYHMTCWCGHEFCYSCGAEY 279 (391)
Q Consensus 245 k~CP~C~~-~IeK~~GCnhMtC~C~~~FCw~C~~~~ 279 (391)
..||-|.. .+....- ..+.=.|||.||+.|...|
T Consensus 4 ~~C~IC~~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~ 38 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSL-KLMVNVCGHTLCESCVDLL 38 (65)
T ss_dssp TCCSTTTTHHHHCSSC-CEEECTTCCCEEHHHHHHH
T ss_pred CcCCcCCCCccCCCcc-CeecCCCCCHhHHHHHHHH
Confidence 47888887 4432210 0122378888888888888
No 166
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=46.75 E-value=13 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=18.8
Q ss_pred CCCccccceeeecCCCcceEec---cccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTCW---CGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~---C~~~F 271 (391)
-.||.|+.+.+... +.+.|. ||..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988777 667774 65544
No 167
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.40 E-value=38 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=24.7
Q ss_pred cccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 016355 75 PENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 107 (391)
Q Consensus 75 ~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~~ 107 (391)
...|.+|...|... .-..+ .||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999888643 33556 89999999996543
No 168
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=43.95 E-value=11 Score=30.01 Aligned_cols=26 Identities=31% Similarity=0.815 Sum_probs=20.4
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
-.||+|+....=.+|=+ +.| -|+++|
T Consensus 28 P~CP~C~seytYeDg~l-~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGAL-LVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSS-EEETTTTEEE
T ss_pred CCCCCCCCcceEecCCe-EECCcccccc
Confidence 79999998887777754 777 777775
No 169
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=43.58 E-value=9.4 Score=28.71 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCCeeeccCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCH
Q 016355 73 KSPENCSICCEDKPYPMMITMKCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFIST 132 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~ 132 (391)
...+.|-.|.-... .++. -..|..|..|+...++. .=+||. |+..++.
T Consensus 26 ~G~~nCKsCWf~~k--~LV~-C~dHYLCl~CLtlmL~~-------SdrCpI--C~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVE-CNNHYLCLNCLTLLLSV-------SNRCPI--CKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEE-CSSCEEEHHHHHHTCSS-------SSEETT--TTEECCC
T ss_pred cCcccChhhccccC--Ceee-ecchhhHHHHHHHHHhh-------ccCCcc--cCCcCCc
Confidence 45688999986543 2222 23699999999877632 238998 9887763
No 170
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.19 E-value=12 Score=27.41 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=26.2
Q ss_pred CCCcccccccccccCCC-Ceeec-cCCCcccHHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRT 106 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~ 106 (391)
+.....|.+|...|... .-... .||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45567899999988643 33455 8999999999654
No 171
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=42.73 E-value=13 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCccccce---eeecCCCcceEe-ccccc
Q 016355 246 RCQQCRRM---IELTHGCYHMTC-WCGHE 270 (391)
Q Consensus 246 ~CP~C~~~---IeK~~GCnhMtC-~C~~~ 270 (391)
.||.|+.+ +.+..+=..+.| .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 48888854 566678888899 89875
No 172
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.67 E-value=15 Score=27.25 Aligned_cols=36 Identities=22% Similarity=0.507 Sum_probs=26.4
Q ss_pred CCCcccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 107 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~~ 107 (391)
+.....|.+|...|... .-... .||+.||..|....
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34566899999887643 33455 89999999997644
No 173
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.91 E-value=13 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=27.1
Q ss_pred CccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcccccccccCCCCCCCch
Q 016355 161 RIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCE 218 (391)
Q Consensus 161 ~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~~~sC~ 218 (391)
...|..++|..... .-+.|..|+..||...+.+ ..+.|.
T Consensus 12 ~~~Cs~~~Ck~~~l-----------------l~f~C~~C~~~FC~~HR~~--e~H~C~ 50 (63)
T 1x4v_A 12 TNKCERAGCRQREM-----------------MKLTCERCSRNFCIKHRHP--LDHDCS 50 (63)
T ss_dssp CCCCCSTTCCCCCS-----------------SCCBCSSSCCBCCHHHHST--TSSCCC
T ss_pred CCCCCccCCCCCCc-----------------cceECCCCCcccCcccCCc--cCCcCC
Confidence 35788888875411 2357999999999998865 234564
No 174
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.11 E-value=21 Score=29.59 Aligned_cols=38 Identities=24% Similarity=0.698 Sum_probs=29.0
Q ss_pred CCCCCCcccccccccccCCCCeeecc---CCCcccHHHHHHHHH
Q 016355 69 SQGDKSPENCSICCEDKPYPMMITMK---CSHKFCSHCMRTYID 109 (391)
Q Consensus 69 ~~~~~~~~~C~IC~e~~~~~~~~~l~---C~H~fC~~Cl~~~i~ 109 (391)
..+++....|.||.+. .+++.++ |...||.+|+...+.
T Consensus 73 ~DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp BCTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred cCCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3457778899999864 3555553 889999999988763
No 175
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.47 E-value=24 Score=26.02 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=28.8
Q ss_pred CCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcccccccccCCCCCCCchh
Q 016355 160 DRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVECGVPWHSSLSCEE 219 (391)
Q Consensus 160 ~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~~~sC~e 219 (391)
....|..++|...... -+.|..|+..||...+.+. .+.|..
T Consensus 24 ~~~~C~~~~Ck~~~~l-----------------~f~C~~C~~~FC~~HR~~e--~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELV-----------------AVICPYCEKNFCLRHRHQS--DHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEESS-----------------CEECTTTCCEECGGGCSTG--GGTCSS
T ss_pred CCCCCCCcCCCCCCcc-----------------ceECCCCCcccccccCCcc--CCCCCC
Confidence 3457999899866322 3679999999999988652 235644
No 176
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=36.91 E-value=13 Score=27.00 Aligned_cols=35 Identities=23% Similarity=0.619 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCC-Ceeec-cCCCcccHHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRT 106 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~ 106 (391)
+.....|.+|...|... .-... .||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34556899999988643 23455 8999999999754
No 177
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.28 E-value=16 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCCcccccccccccCCC-Ceeec-cCCCcccHHHHH
Q 016355 72 DKSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMR 105 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~ 105 (391)
+.....|.+|...|... .-... .||..||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34566899999887533 23455 899999999954
No 178
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=35.88 E-value=6.3 Score=36.57 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=25.0
Q ss_pred cCCCCCccccceeeecC-CCcceEe-ccccceec
Q 016355 242 KRWRRCQQCRRMIELTH-GCYHMTC-WCGHEFCY 273 (391)
Q Consensus 242 ~~~k~CP~C~~~IeK~~-GCnhMtC-~C~~~FCw 273 (391)
..|.+||+|+..|-.++ .=|...| .|+|++=.
T Consensus 22 ~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 22 GVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp -CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred HHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCC
Confidence 45899999999998873 3388899 79998743
No 179
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=35.77 E-value=25 Score=28.29 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=21.0
Q ss_pred CCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcc
Q 016355 158 HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERF 202 (391)
Q Consensus 158 ~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~ 202 (391)
.....+|| .|++++.+.+.. ......+.|+.|++.
T Consensus 21 ~~~~~FCP--eCgNmL~pked~--------~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDK--------ENNRLLFECRTCSYV 55 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCT--------TTCCBCCBCSSSCCB
T ss_pred ccCCeeCC--CCCCEeeECccC--------CCceeEEECCCCCCc
Confidence 35678999 699998873211 112234667777764
No 180
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.35 E-value=20 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.810 Sum_probs=14.0
Q ss_pred ccHHHHHHHHHHHhhC
Q 016355 99 FCSHCMRTYIDGKVQS 114 (391)
Q Consensus 99 fC~~Cl~~~i~~~i~~ 114 (391)
||+.|+.+|+..+..+
T Consensus 43 FCRNCLskWy~~aA~e 58 (105)
T 2o35_A 43 FCRNCLSNWYREAAEA 58 (105)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 181
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.99 E-value=29 Score=31.06 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHhhCChhHHHHHHHHHHH-HhcC--CCCCccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCccc
Q 016355 134 ECKSFLPLSSYESLETALAE-ANIL--HSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFI 203 (391)
Q Consensus 134 ~i~~~l~~~~~e~~~~~~~~-~~i~--~~~~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~f 203 (391)
.+..-++++++..|.+.... ..+. .-..-.|- +|...+++..+..... ....++||.||+..
T Consensus 168 ~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~------~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLT------SGDMITCPYCGRIL 232 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHH------SSSCEECTTTCCEE
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHC------CCCEEECCCCCeeE
Confidence 34556789999999987643 2222 22334576 6888887754432222 12468899999754
No 182
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.76 E-value=14 Score=33.43 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccccCCCCcccccC
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYRDGQQTCQCAF 290 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~~~~~~c~C~~ 290 (391)
-.||=|...+. +-++- .|||.||-.|...|-..+....||.
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 68999998884 67888 8999999999988765433344554
No 183
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=32.74 E-value=13 Score=31.74 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=43.9
Q ss_pred ccccccccccCCCC----eeec-cCCCcccHHHHHHHHH--HHhhC--CCcccccCCCccCCccCHHHHHhhCChhHHHH
Q 016355 76 ENCSICCEDKPYPM----MITM-KCSHKFCSHCMRTYID--GKVQS--SQVPIRCPQLRCKYFISTVECKSFLPLSSYES 146 (391)
Q Consensus 76 ~~C~IC~e~~~~~~----~~~l-~C~H~fC~~Cl~~~i~--~~i~~--g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~ 146 (391)
..|+||-..+..++ |+.+ .|...|...|..-.-+ ..+.+ ......||. |...-+.. .+..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHHHHHHHH
Confidence 45999998887654 8888 9999998888853221 11211 012358988 87765432 444444454444
Q ss_pred HHHHH
Q 016355 147 LETAL 151 (391)
Q Consensus 147 ~~~~~ 151 (391)
+.+.+
T Consensus 80 l~~vl 84 (183)
T 3lqh_A 80 LKQVL 84 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 184
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.11 E-value=22 Score=30.96 Aligned_cols=33 Identities=33% Similarity=0.773 Sum_probs=25.7
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEY 279 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~ 279 (391)
..|+.|+..+. -.--.-.| .||.-||..|....
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccC--CcccccccCCcCCEEChHHhCCe
Confidence 68999998874 22345679 99999999998764
No 185
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.04 E-value=18 Score=27.35 Aligned_cols=16 Identities=19% Similarity=0.756 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHHHhhC
Q 016355 99 FCSHCMRTYIDGKVQS 114 (391)
Q Consensus 99 fC~~Cl~~~i~~~i~~ 114 (391)
||+.|+.+|+..+..+
T Consensus 42 FCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 42 FCRNCLAKWLMEAATE 57 (104)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887643
No 186
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.93 E-value=24 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=24.8
Q ss_pred CCcccccccccccCCC-Ceeec-cCCCcccHHHHHH
Q 016355 73 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRT 106 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~ 106 (391)
.....|.+|...|... .-... .||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3455799999987643 33455 8999999998643
No 187
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.47 E-value=17 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=23.1
Q ss_pred ccccccccccCCC-Ceeec-cCCCcccHHHHHH
Q 016355 76 ENCSICCEDKPYP-MMITM-KCSHKFCSHCMRT 106 (391)
Q Consensus 76 ~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~ 106 (391)
..|.+|...|... .-... .||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3799999887643 23455 8999999999643
No 188
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=30.28 E-value=48 Score=26.46 Aligned_cols=44 Identities=18% Similarity=0.524 Sum_probs=32.7
Q ss_pred ccCCCccCC---ccCHHHHHhhCChhHHHHHHHHHHHHhcCCCCCccccCCCCCeeecC
Q 016355 120 RCPQLRCKY---FISTVECKSFLPLSSYESLETALAEANILHSDRIYCPFPNCSVLLDP 175 (391)
Q Consensus 120 ~CP~~~C~~---~i~~~~i~~~l~~~~~e~~~~~~~~~~i~~~~~~~CP~p~C~~~~~~ 175 (391)
.||. |+. .+....++.+|.++.++ +...++..|++|+|...++.
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFN 49 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEEC
T ss_pred cCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEEC
Confidence 6888 766 47888888888776432 33457788999999987774
No 189
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=29.98 E-value=29 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=13.7
Q ss_pred cccccccccCCCCCCCchh
Q 016355 201 RFICVECGVPWHSSLSCEE 219 (391)
Q Consensus 201 ~~fC~~C~~~~H~~~sC~e 219 (391)
..+|..|+..-|....|.+
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 4578889888898877754
No 190
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.81 E-value=17 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=20.2
Q ss_pred CCCCCccccceeeecCCCcceEe-ccccce
Q 016355 243 RWRRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 243 ~~k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
..-.|..|+..++...| .-+.| .||+..
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 34688888888877655 66888 787653
No 191
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.81 E-value=37 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCcccccccccccCCCCeeec-cCCCcccHHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMR 105 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~ 105 (391)
.....|.+|........|+.+ .|.-.|...|+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 345679999887666678888 999899999975
No 192
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.57 E-value=16 Score=30.04 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred CccccCCCCCeeecCccccccccCCCCCCCCCeeeCCCCCcccccc
Q 016355 161 RIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCERFICVE 206 (391)
Q Consensus 161 ~~~CP~p~C~~~~~~~~~~~~~~~~~~~~~~~~v~C~~C~~~fC~~ 206 (391)
...||.+.|+..++-. .......|-.|+..++++
T Consensus 118 ~~~c~~~~cg~g~fma------------~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLA------------NHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEE------------ECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEec------------ccCCCcccCCCceEEEec
Confidence 4579998898643320 012346688888887753
No 193
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=28.35 E-value=42 Score=20.43 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.3
Q ss_pred CeeeCCCCCccccccccc-CCCCCCC
Q 016355 192 SCVECPVCERFICVECGV-PWHSSLS 216 (391)
Q Consensus 192 ~~v~C~~C~~~fC~~C~~-~~H~~~s 216 (391)
..+.|..++...|..|.. ..|.+++
T Consensus 13 l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 13 LKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp CCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 456799999999999987 5787764
No 194
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=28.25 E-value=1.2e+02 Score=24.08 Aligned_cols=52 Identities=25% Similarity=0.584 Sum_probs=35.0
Q ss_pred CCCCCcccccccccccCCCCeeec-cCCCcccHHHHHHHH-----HHHh-hCCCcccccCCCccCC
Q 016355 70 QGDKSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRTYI-----DGKV-QSSQVPIRCPQLRCKY 128 (391)
Q Consensus 70 ~~~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i-----~~~i-~~g~~~i~CP~~~C~~ 128 (391)
.++.....|.+|.+. .+++-. .|-..||..|+...+ ...+ .++.+ .|+. |..
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W--~C~~--C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQW--YCYI--CHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCC--CCTT--TCC
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCe--EcCC--cCC
Confidence 345566779999864 455555 899999999999764 2222 34444 6876 644
No 195
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.80 E-value=27 Score=28.80 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=29.7
Q ss_pred CCCCccccceeeecCCCcceEe-ccccceeccccccc
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEY 279 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~ 279 (391)
-+.|..|..++-.-.|. .-+| .|++.+|-.|+...
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhccccccc
Confidence 38999999998888888 5677 99999999999543
No 196
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=27.16 E-value=19 Score=30.11 Aligned_cols=75 Identities=20% Similarity=0.390 Sum_probs=41.6
Q ss_pred CCCcccccccccccC-CCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCccCHHHHHhhCChhHHHHHHH
Q 016355 72 DKSPENCSICCEDKP-YPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFISTVECKSFLPLSSYESLET 149 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~-~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i~~~~i~~~l~~~~~e~~~~ 149 (391)
+.....| +|-.... ...|+.+ .|...|...|+.-.-... +......||. |...-.......-++.+.++.+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~--~~~~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~~ 79 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEA--ELIDEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLKR 79 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH--TTCSSCCCHH--HHHHHHHHTTTSBCCHHHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhc--cCccCeecCC--CcchhccccccccCCHHHHHHHHH
Confidence 3456789 9988753 4568888 999999999985322221 1122357876 754321111112345555555544
Q ss_pred HH
Q 016355 150 AL 151 (391)
Q Consensus 150 ~~ 151 (391)
.+
T Consensus 80 il 81 (174)
T 2ri7_A 80 VL 81 (174)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 197
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.78 E-value=31 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.784 Sum_probs=15.8
Q ss_pred CeeeCCCCCcccccccccC
Q 016355 192 SCVECPVCERFICVECGVP 210 (391)
Q Consensus 192 ~~v~C~~C~~~fC~~C~~~ 210 (391)
+.-.|..||..||..|...
T Consensus 84 RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 84 RRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCeEEChHHhCC
Confidence 4567999999999999754
No 198
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.72 E-value=69 Score=22.80 Aligned_cols=54 Identities=22% Similarity=0.483 Sum_probs=36.4
Q ss_pred CCCcccccccccccC-CCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccCCcc
Q 016355 72 DKSPENCSICCEDKP-YPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCKYFI 130 (391)
Q Consensus 72 ~~~~~~C~IC~e~~~-~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~~~i 130 (391)
+.....| ||-..+. ...|+.+ .|...|...|+.-...... ......||. |....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~--~~~~~~C~~--C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV--DIDIYHCPD--CEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT--TCSBBCCTT--TTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc--CCCeEECCC--ccccc
Confidence 4556778 8988764 5678888 9999999999864433321 122467987 76543
No 199
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=26.22 E-value=31 Score=24.51 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=9.1
Q ss_pred CCCccccceeeecCCCc
Q 016355 245 RRCQQCRRMIELTHGCY 261 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCn 261 (391)
-.|| |+...--.+|=-
T Consensus 5 v~C~-C~~~~~~~~~~k 20 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAK 20 (71)
T ss_dssp EEET-TSCCEEEETTCS
T ss_pred EECC-CCCEEEEcCCCc
Confidence 3577 776655554443
No 200
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.12 E-value=32 Score=30.13 Aligned_cols=33 Identities=30% Similarity=0.853 Sum_probs=25.1
Q ss_pred CCCccccceeeecCCCcceEe-ccccceeccccccc
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEY 279 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~ 279 (391)
..|+.|+..+.. ---.-.| .||.-||..|....
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCc--cccccccCCCcCEeChhhcCCc
Confidence 579999887752 2235779 99999999998764
No 201
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.80 E-value=26 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=16.8
Q ss_pred CCCccccceeeec--CCCcceEe-ccc
Q 016355 245 RRCQQCRRMIELT--HGCYHMTC-WCG 268 (391)
Q Consensus 245 k~CP~C~~~IeK~--~GCnhMtC-~C~ 268 (391)
++||.|+.+|++. +|=.-..| .|.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7999999999885 55444444 443
No 202
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.68 E-value=47 Score=21.33 Aligned_cols=46 Identities=24% Similarity=0.696 Sum_probs=30.2
Q ss_pred cccccccccCCCCeeec-cCCCcccHHHHHHHHHHHhhCCCcccccCCCccC
Q 016355 77 NCSICCEDKPYPMMITM-KCSHKFCSHCMRTYIDGKVQSSQVPIRCPQLRCK 127 (391)
Q Consensus 77 ~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~~i~~~i~~g~~~i~CP~~~C~ 127 (391)
.|.||.......+++.. .|...|...|+.--+. .+.+|.+ .||. |.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W--~C~~--C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEW--QCPA--CQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSCC--SCTT--TS
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-CCCCCcE--ECcC--cc
Confidence 48899876655667777 9998999999854222 2333333 5776 64
No 203
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=25.44 E-value=34 Score=30.35 Aligned_cols=22 Identities=27% Similarity=0.750 Sum_probs=14.8
Q ss_pred CCCccccc----eeeecCCCcceEe-cccc
Q 016355 245 RRCQQCRR----MIELTHGCYHMTC-WCGH 269 (391)
Q Consensus 245 k~CP~C~~----~IeK~~GCnhMtC-~C~~ 269 (391)
-+||.|+- .+- +.| ++.| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 69999987 333 345 5777 6665
No 204
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.26 E-value=31 Score=31.17 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=16.6
Q ss_pred CCCccccceeeec--CCCcceEe-ccc
Q 016355 245 RRCQQCRRMIELT--HGCYHMTC-WCG 268 (391)
Q Consensus 245 k~CP~C~~~IeK~--~GCnhMtC-~C~ 268 (391)
++||.|+.+|++. +|=+-..| .|.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7999999999885 44333444 443
No 205
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=24.35 E-value=28 Score=31.54 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=15.1
Q ss_pred CCCccccceeeec--CCCcceEe
Q 016355 245 RRCQQCRRMIELT--HGCYHMTC 265 (391)
Q Consensus 245 k~CP~C~~~IeK~--~GCnhMtC 265 (391)
++||+|+.+|+|. +|=+-..|
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~C 268 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYC 268 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCeEEEEEECCCCeEEC
Confidence 7999999999874 45333334
No 206
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.27 E-value=29 Score=31.32 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.0
Q ss_pred CCCccccceeeec--CCCcceEe
Q 016355 245 RRCQQCRRMIELT--HGCYHMTC 265 (391)
Q Consensus 245 k~CP~C~~~IeK~--~GCnhMtC 265 (391)
++||.|+.+|++. +|=+-..|
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~C 263 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYC 263 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCEeeEEEECCCceEEC
Confidence 7999999999885 44333334
No 207
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=24.23 E-value=16 Score=32.56 Aligned_cols=33 Identities=6% Similarity=-0.185 Sum_probs=25.3
Q ss_pred CCCccccceeeecCCCcceEeccccceeccccccccCC
Q 016355 245 RRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDG 282 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC~C~~~FCw~C~~~~~~~ 282 (391)
-.||-|...+. +-++=.|||.||..|...|-..
T Consensus 209 ~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 209 LCGKISFELMR-----EPCITPSGITYDRKDIEEHLQR 241 (281)
T ss_dssp TBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHH
T ss_pred cCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHH
Confidence 57888887764 4455589999999999988643
No 208
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.08 E-value=21 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=12.1
Q ss_pred CCcccccccccccCCC
Q 016355 73 KSPENCSICCEDKPYP 88 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~ 88 (391)
...|.|++|+.++...
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3469999999877644
No 209
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.75 E-value=76 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=23.4
Q ss_pred CCCCccccceeeecCCCcceEe-ccccc
Q 016355 244 WRRCQQCRRMIELTHGCYHMTC-WCGHE 270 (391)
Q Consensus 244 ~k~CP~C~~~IeK~~GCnhMtC-~C~~~ 270 (391)
.+-||.|+.+.+...+=-.+.| .||..
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCE
Confidence 3899999999988888788999 89864
No 210
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.63 E-value=98 Score=21.73 Aligned_cols=33 Identities=24% Similarity=0.580 Sum_probs=26.1
Q ss_pred CCcccccccccccCCCCeeec-cCCCcccHHHHHH
Q 016355 73 KSPENCSICCEDKPYPMMITM-KCSHKFCSHCMRT 106 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~ 106 (391)
.....| ||-.......|+.. .|...|...|+.-
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSC
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEcc
Confidence 345778 89887766678888 9999999999864
No 211
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.49 E-value=31 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=15.9
Q ss_pred CCCccccceeeec--CCCcceEe-cc
Q 016355 245 RRCQQCRRMIELT--HGCYHMTC-WC 267 (391)
Q Consensus 245 k~CP~C~~~IeK~--~GCnhMtC-~C 267 (391)
++||.|+.+|++. +|=.-..| .|
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCC
Confidence 6899999999875 44333444 44
No 212
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=23.15 E-value=20 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.585 Sum_probs=21.8
Q ss_pred CeeeCCCCCcccccccccCCCCCCCc
Q 016355 192 SCVECPVCERFICVECGVPWHSSLSC 217 (391)
Q Consensus 192 ~~v~C~~C~~~fC~~C~~~~H~~~sC 217 (391)
..+.|..|+..+|..|....|.++.-
T Consensus 17 l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 17 LVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp CCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred EEEEeCCCCEEEecccCCCcCCCCce
Confidence 45789999999999998878888754
No 213
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.07 E-value=73 Score=24.67 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=10.3
Q ss_pred CCCccccCCCCCeeecC
Q 016355 159 SDRIYCPFPNCSVLLDP 175 (391)
Q Consensus 159 ~~~~~CP~p~C~~~~~~ 175 (391)
+...+|+ +|+..+..
T Consensus 71 p~~~~C~--~CG~~~e~ 85 (119)
T 2kdx_A 71 KVELECK--DCSHVFKP 85 (119)
T ss_dssp CCEEECS--SSSCEECS
T ss_pred cceEEcC--CCCCEEeC
Confidence 3456788 68887766
No 214
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.38 E-value=26 Score=30.54 Aligned_cols=33 Identities=18% Similarity=0.527 Sum_probs=24.5
Q ss_pred cccccccccccCCC-Ceeec-cCCCcccHHHHHHH
Q 016355 75 PENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTY 107 (391)
Q Consensus 75 ~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~~ 107 (391)
...|.+|...|... .-..+ .||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 36899999887632 33556 89999999986543
No 215
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.94 E-value=80 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=19.7
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 689999988777666555667 666554
No 216
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.04 E-value=27 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCcccccccccccCCC-Ceeec-cCCCcccHHHHHHHH
Q 016355 73 KSPENCSICCEDKPYP-MMITM-KCSHKFCSHCMRTYI 108 (391)
Q Consensus 73 ~~~~~C~IC~e~~~~~-~~~~l-~C~H~fC~~Cl~~~i 108 (391)
.....|..|-..|... .-..+ .||..||..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3446899998887542 23455 899999999976554
No 217
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.72 E-value=67 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=18.6
Q ss_pred CCCccccceeeecCCCcceEe-ccccce
Q 016355 245 RRCQQCRRMIELTHGCYHMTC-WCGHEF 271 (391)
Q Consensus 245 k~CP~C~~~IeK~~GCnhMtC-~C~~~F 271 (391)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 689999988777766555556 555443
No 218
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.72 E-value=46 Score=26.70 Aligned_cols=37 Identities=24% Similarity=0.628 Sum_probs=30.5
Q ss_pred CCCCCccccceeeecCCCcceEe-ccccceecccccccc
Q 016355 243 RWRRCQQCRRMIELTHGCYHMTC-WCGHEFCYSCGAEYR 280 (391)
Q Consensus 243 ~~k~CP~C~~~IeK~~GCnhMtC-~C~~~FCw~C~~~~~ 280 (391)
+.+.|..|..++-..+|.. -.| .|++.+|-.|+....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEECC
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCccC
Confidence 4478999999996666666 667 999999999998764
No 219
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.51 E-value=38 Score=23.01 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=24.6
Q ss_pred CCcccccccccccC-CCCeeec-cCCCcccHHHHH
Q 016355 73 KSPENCSICCEDKP-YPMMITM-KCSHKFCSHCMR 105 (391)
Q Consensus 73 ~~~~~C~IC~e~~~-~~~~~~l-~C~H~fC~~Cl~ 105 (391)
.....|++|-..+. ...|+.. .|...|...|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 34567999988764 4567888 888888888864
No 220
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.15 E-value=21 Score=23.62 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=7.6
Q ss_pred CCCccccce
Q 016355 245 RRCQQCRRM 253 (391)
Q Consensus 245 k~CP~C~~~ 253 (391)
+.||+|+..
T Consensus 15 ~iCpkC~a~ 23 (51)
T 3j21_g 15 YVCLRCGAT 23 (51)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCCc
Confidence 789999887
Done!