Your job contains 1 sequence.
>016357
MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKPSSRSLPLLFLNRFRPLSTAVRFG
SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT
RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL
PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRSYDRSRNFE
RRRENMQNRNFQNQGMPNHAPNMSGMPPNNVPSSSNMSPNMGSMSQNNLGGMPQNNYGGT
PPPNNYGGMPPPNNYAGVPPPQNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAA
TAEQLWRNAATTELWRNTTTEQLWRNSTATK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016357
(391 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086310 - symbol:RIP1 "RNA-editing factor inte... 698 5.2e-79 2
TAIR|locus:2083348 - symbol:MORF3 "multiple organellar RN... 452 9.3e-43 1
TAIR|locus:2009625 - symbol:AT1G53260 species:3702 "Arabi... 315 1.7e-34 2
TAIR|locus:2030200 - symbol:AT1G72530 "AT1G72530" species... 370 4.6e-34 1
TAIR|locus:2200131 - symbol:MORF9 "multiple organellar RN... 365 1.5e-33 1
TAIR|locus:2051003 - symbol:DAL1 "differentiation and gre... 358 8.5e-33 1
TAIR|locus:2063389 - symbol:MORF6 "multiple organellar RN... 358 8.5e-33 1
TAIR|locus:2206639 - symbol:AT1G32580 "AT1G32580" species... 352 3.7e-32 1
UNIPROTKB|Q2R8U1 - symbol:Os11g0216400 "Os11g0216400 prot... 286 1.4e-29 2
TAIR|locus:2119782 - symbol:MORF1 "multiple organellar RN... 243 1.7e-23 2
TAIR|locus:2156344 - symbol:MORF4 "AT5G44780" species:370... 229 2.8e-21 3
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 150 4.3e-08 1
>TAIR|locus:2086310 [details] [associations]
symbol:RIP1 "RNA-editing factor interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0050897 "cobalt ion
binding" evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0016554 "cytidine to uridine editing" evidence=IMP] [GO:0080156
"mitochondrial mRNA modification" evidence=IMP] GO:GO:0005739
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016554
GO:GO:0050897 EMBL:AP000370 GO:GO:0080156 EMBL:AF428427
IPI:IPI00532410 RefSeq:NP_566496.1 UniGene:At.24349
UniGene:At.67750 IntAct:Q9LKA5 STRING:Q9LKA5 PaxDb:Q9LKA5
PRIDE:Q9LKA5 EnsemblPlants:AT3G15000.1 GeneID:820729
KEGG:ath:AT3G15000 GeneFarm:775 TAIR:At3g15000 eggNOG:NOG243672
HOGENOM:HOG000243016 InParanoid:Q9LKA5 OMA:GAPPQNN PhylomeDB:Q9LKA5
ProtClustDB:CLSN2915005 Genevestigator:Q9LKA5 GermOnline:AT3G15000
Uniprot:Q9LKA5
Length = 395
Score = 698 (250.8 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 141/246 (57%), Positives = 166/246 (67%)
Query: 1 MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFG 60
MAT SR L P K+L+ L +RSF+++A K + R
Sbjct: 1 MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFR-- 56
Query: 61 SGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPT 120
GG+V S +G+ST+ ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+PT
Sbjct: 57 -GGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPT 112
Query: 121 RDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVL 180
RDEIID YIKTLA + G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL VRWVL
Sbjct: 113 RDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVL 171
Query: 181 PDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFE 240
PDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+ FE
Sbjct: 172 PDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNFE 231
Query: 241 RRRENM 246
RRRENM
Sbjct: 232 RRRENM 237
Score = 632 (227.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 123/193 (63%), Positives = 146/193 (75%)
Query: 62 GGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTR 121
GG+V S +G+ST+ ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+PTR
Sbjct: 57 GGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTR 113
Query: 122 DEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLP 181
DEIID YIKTLA + G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL VRWVLP
Sbjct: 114 DEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLP 172
Query: 182 DSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFER 241
DSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+ +R
Sbjct: 173 DSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRN------------DR 220
Query: 242 RRENMQNRNFQNQ 254
R N ++RNF+ +
Sbjct: 221 PRNNDRSRNFERR 233
Score = 115 (45.5 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 324 NYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGG 357
NYGG PPP +YGGA PP N GG PPP NYGG
Sbjct: 314 NYGGTPPP--NYGGA-PPANNMGGAPPP--NYGG 342
Score = 111 (44.1 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 325 YGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGG 357
YG PPQN+ GG PPQN YGGTPPP NYGG
Sbjct: 298 YGA--PPQNNMGGPRPPQN-YGGTPPP--NYGG 325
Score = 109 (43.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 21/32 (65%), Positives = 21/32 (65%)
Query: 324 NYGGAPPPQNSYGGALPPQNKYGGTPPPQNNY 355
NYGG PPPQ YG PPQ YGG PP NNY
Sbjct: 339 NYGGGPPPQ--YGAVPPPQ--YGGAPPQNNNY 366
Score = 109 (43.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 323 NNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGG 357
NN GGAPPP +YGG PPQ YG PPPQ YGG
Sbjct: 330 NNMGGAPPP--NYGGGPPPQ--YGAVPPPQ--YGG 358
Score = 101 (40.6 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 324 NYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYG 356
NYGGAPP N+ GGA PP N YGG PPPQ YG
Sbjct: 322 NYGGAPPA-NNMGGA-PPPN-YGGGPPPQ--YG 349
Score = 97 (39.2 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 324 NYGGAPPPQNSYGG-------ALPPQNKYGGTPPPQNNYGGT 358
NYG PPP N+ GG PPQN GG PPQN YGGT
Sbjct: 280 NYG--PPPPNNMGGPRHPPPYGAPPQNNMGGPRPPQN-YGGT 318
Score = 86 (35.3 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 322 QNNYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGGTAATAEQLWRN 368
+ N G PPPQ G PP GG+ PP + GG+A + +N
Sbjct: 234 RENMAGGPPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQN 280
Score = 80 (33.2 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 326 GGAPPPQNSYGGALPPQN---KYGGTPPPQNNYGG 357
G APPP + G A PP + YG PPP NN GG
Sbjct: 259 GSAPPPPHMGGSAPPPPHMGQNYG--PPPPNNMGG 291
>TAIR|locus:2083348 [details] [associations]
symbol:MORF3 "multiple organellar RNA editing factor 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0050897
"cobalt ion binding" evidence=IDA] [GO:1900864 "mitochondrial RNA
modification" evidence=IMP] GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050897 EMBL:AC023912
HOGENOM:HOG000272676 GO:GO:1900864 UniGene:At.18838
UniGene:At.74889 IPI:IPI00530723 RefSeq:NP_187335.1 STRING:Q9M7Y5
PRIDE:Q9M7Y5 EnsemblPlants:AT3G06790.1 GeneID:819864
KEGG:ath:AT3G06790 TAIR:At3g06790 InParanoid:Q9M7Y5
ProtClustDB:CLSN2684671 Genevestigator:Q9M7Y5 Uniprot:Q9M7Y5
Length = 244
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 86/142 (60%), Positives = 107/142 (75%)
Query: 73 MSTRPATAS-----LNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDR 127
+STRP T+ LND SPNWSNRPPKETILLDGCD+EHWL+VME + PT +E+I+
Sbjct: 57 ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINS 116
Query: 128 YIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDV 187
Y+KTL +V G ++EA+ KIYSV T Y FGAL+ EE S K+K LPGV WVLPDSYLDV
Sbjct: 117 YVKTLTSVL-GWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDV 175
Query: 188 KNKDYGGEPFINGQAVPYDPKY 209
NKDYGG+ ++ G+ +P P+Y
Sbjct: 176 PNKDYGGDLYVEGKVIPR-PQY 196
>TAIR|locus:2009625 [details] [associations]
symbol:AT1G53260 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] EMBL:CP002684 UniGene:At.50949
EMBL:AY954765 IPI:IPI00546248 RefSeq:NP_175733.2 PRIDE:Q58G44
EnsemblPlants:AT1G53260.1 GeneID:841759 KEGG:ath:AT1G53260
OMA:PPPNMNQ Genevestigator:Q58G44 Uniprot:Q58G44
Length = 271
Score = 315 (115.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 145 MKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVP 204
MKIYSVS K Y+AFGALV E+ S+K+KELP V+WVLPDSYLD KNKDYGGEPFI+G+AVP
Sbjct: 1 MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60
Query: 205 YDPKYHEEWV 214
YDPKYHEEW+
Sbjct: 61 YDPKYHEEWI 70
Score = 75 (31.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 324 NYGGAPPP---QNSYGGALPPQN---KYGGTPPPQNNYGGTAATAEQ 364
+Y G PP QN G +LPP N Y G PPP N GG + +Q
Sbjct: 201 SYQGPPPSNMGQNYRGPSLPPPNMSQNYEGPPPPNMN-GGWSGNYQQ 246
Score = 75 (31.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 324 NYGGAPPPQ--NSYGGALPPQ-NK-YGGTPPPQN---NYGGTAATAEQLWRN 368
NY G PPP SY G PP N+ Y G PPP N NY G + + +N
Sbjct: 177 NYQGPPPPNMNQSYQGPPPPNMNQSYQG-PPPSNMGQNYRGPSLPPPNMSQN 227
Score = 68 (29.0 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 324 NYGGAPPPQN---SYGGALPPQ--NKYGGTPPPQNN 354
NY G PPP N +Y G PP Y G PPP N
Sbjct: 165 NYQG-PPPSNMGQNYQGPPPPNMNQSYQGPPPPNMN 199
Score = 68 (29.0 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 324 NYGGAPPP----QNSYGGALPPQNK-YGGTPPPQN---NYGG 357
NY G PPP QN G P N+ Y G PPP N NY G
Sbjct: 140 NYRGPPPPPNMNQNYQGPPAPNMNQNYQG-PPPSNMGQNYQG 180
Score = 59 (25.8 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 19/43 (44%), Positives = 20/43 (46%)
Query: 324 NYGGAPPPQ--NSYGGALPPQN---KYGGT--PPPQ--NNYGG 357
+Y G PPP SY G PP N Y G PPP NY G
Sbjct: 189 SYQGPPPPNMNQSYQGP-PPSNMGQNYRGPSLPPPNMSQNYEG 230
Score = 58 (25.5 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 329 PPPQNSYGGALPPQNKYGGTP--PP 351
PPP GGA PP G P PP
Sbjct: 106 PPPNQGMGGAPPPPPHIGNNPNMPP 130
Score = 50 (22.7 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 322 QNNYGGAPPPQNSYGG-ALPPQNK-YGGTPPPQNNYG 356
+N+ GG N G PP N+ GG PPP + G
Sbjct: 87 RNSDGGRNDRGNQDTGYRRPPPNQGMGGAPPPPPHIG 123
Score = 47 (21.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 331 PQNSYGGALPPQNKYGG--TPPPQNNYGGTAATAEQLWRN 368
P+NS GG N+ G PPP GG + N
Sbjct: 86 PRNSDGGRNDRGNQDTGYRRPPPNQGMGGAPPPPPHIGNN 125
Score = 46 (21.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 324 NYGGAPPPQNSYGGALPPQNKYGGTPPPQNNYGG 357
NY G PPP N GG + GG Q GG
Sbjct: 227 NYEGPPPP-NMNGGWSGNYQQNGGYQ--QQGQGG 257
>TAIR|locus:2030200 [details] [associations]
symbol:AT1G72530 "AT1G72530" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 IPI:IPI00938919 RefSeq:NP_001154468.1
UniGene:At.50962 EnsemblPlants:AT1G72530.2 GeneID:843585
KEGG:ath:AT1G72530 OMA:YDEKYHA ArrayExpress:F4IDD2 Uniprot:F4IDD2
Length = 192
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 69/143 (48%), Positives = 100/143 (69%)
Query: 79 TASLNDSSPNWSN--RPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVF 136
+ S+N + +WS R P L++GCD++HWLV+M+ P G PTR+ I+ +++TLA
Sbjct: 29 SGSINSETTSWSELIRVPS---LVEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMAL 85
Query: 137 DGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYL-DVKNKDYG-- 193
G E+EA+ IYSVSTK+YYAFG + E +YK++ LP V+WVLPDS++ D N+ YG
Sbjct: 86 -GSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNR-YGVF 143
Query: 194 --GEPFINGQAVPYDPKYHEEWV 214
GEPF++G+ VPYD KYH +W+
Sbjct: 144 FAGEPFVDGEVVPYDEKYHADWL 166
>TAIR|locus:2200131 [details] [associations]
symbol:MORF9 "multiple organellar RNA editing factor 9"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:1900865
"chloroplast RNA modification" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0006399 "tRNA metabolic process"
evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0045036 "protein targeting to
chloroplast" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
GO:GO:0009570 GO:GO:0009941 EMBL:AC011661 GO:GO:1900865
EMBL:BT005071 EMBL:AK117508 IPI:IPI00532519 RefSeq:NP_172610.1
UniGene:At.42133 IntAct:Q9LPZ1 STRING:Q9LPZ1 PRIDE:Q9LPZ1
ProMEX:Q9LPZ1 EnsemblPlants:AT1G11430.1 GeneID:837685
KEGG:ath:AT1G11430 TAIR:At1g11430 InParanoid:Q9LPZ1 OMA:NEQRETI
PhylomeDB:Q9LPZ1 ProtClustDB:CLSN2681966 ArrayExpress:Q9LPZ1
Genevestigator:Q9LPZ1 Uniprot:Q9LPZ1
Length = 232
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 75/152 (49%), Positives = 100/152 (65%)
Query: 64 IVTGPSARGMS-TRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGD-PTR 121
I T S R ++ + AT + SS ++ +ETI+L GCD+ HWL+VME P+ P+R
Sbjct: 45 ISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSR 104
Query: 122 DEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLP 181
D++ID Y+ TLATV G +EA+ +Y+ ST Y F +DEETS K K LPGV WVLP
Sbjct: 105 DQMIDTYLNTLATVL-GSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLP 163
Query: 182 DSYLDVKNKDYGGEPFINGQAVP-----YDPK 208
DSY+DVKNKDYGG+ +ING+ +P Y PK
Sbjct: 164 DSYIDVKNKDYGGDKYINGEIIPCTYPTYQPK 195
>TAIR|locus:2051003 [details] [associations]
symbol:DAL1 "differentiation and greening-like 1"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0002103 "endonucleolytic
cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA,
4.5S-rRNA, 5S-rRNA)" evidence=IMP] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009657 "plastid organization" evidence=IMP]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009658
"chloroplast organization" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009657 EMBL:AC002332
EMBL:AF446351 EMBL:AY097425 EMBL:AK228465 IPI:IPI00521047
PIR:D84745 PIR:T52623 RefSeq:NP_180901.1 UniGene:At.111
IntAct:O22793 STRING:O22793 PaxDb:O22793 PRIDE:O22793
EnsemblPlants:AT2G33430.1 GeneID:817907 KEGG:ath:AT2G33430
TAIR:At2g33430 eggNOG:NOG268944 HOGENOM:HOG000272676
InParanoid:O22793 OMA:YSRRREN PhylomeDB:O22793
ProtClustDB:CLSN2682809 ArrayExpress:O22793 Genevestigator:O22793
GO:GO:0002103 Uniprot:O22793
Length = 219
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 72/139 (51%), Positives = 98/139 (70%)
Query: 72 GMSTRPATASLNDSSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDRYI 129
G + +T S +S N+S+RPP E L GCD+EHWL+VM+KP G+ T+ ++ID YI
Sbjct: 50 GANRSGSTYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 109
Query: 130 KTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKN 189
+TLA V G E+EA+ +IY+VS + Y FG +DEETS KL+ LPGV +VLPDSY+D +N
Sbjct: 110 QTLAKVV-GSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPEN 168
Query: 190 KDYGGEPFINGQAVPYDPK 208
KDYG E F+NG+ V P+
Sbjct: 169 KDYGAELFVNGEIVQRSPE 187
>TAIR|locus:2063389 [details] [associations]
symbol:MORF6 "multiple organellar RNA editing factor 6"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC004667
HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY072439
EMBL:BT003414 IPI:IPI00523082 PIR:B84766 RefSeq:NP_181067.1
UniGene:At.37691 IntAct:O82169 PaxDb:O82169 PRIDE:O82169
EnsemblPlants:AT2G35240.1 GeneID:818091 KEGG:ath:AT2G35240
TAIR:At2g35240 eggNOG:NOG317940 OMA:SPTIFHA PhylomeDB:O82169
ArrayExpress:O82169 Genevestigator:O82169 Uniprot:O82169
Length = 232
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 70/132 (53%), Positives = 93/132 (70%)
Query: 85 SSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGDPT-RDEIIDRYIKTLATVFDGREDE 142
S N+S+RPP E L GCD+EHWL+VMEKP G+ + ++ID Y++TLA + G E+E
Sbjct: 75 SGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIV-GSEEE 133
Query: 143 ARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQA 202
AR KIY+VS + Y+ FG +DEETS KL+ LPGV +VLPDSY+D + KDYG E F+NG+
Sbjct: 134 ARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEV 193
Query: 203 VPYDPKYHEEWV 214
VP P+ V
Sbjct: 194 VPRPPERQRRMV 205
>TAIR|locus:2206639 [details] [associations]
symbol:AT1G32580 "AT1G32580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 EMBL:AC055769
HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY063995
EMBL:AY096695 IPI:IPI00520554 PIR:D86451 RefSeq:NP_174536.1
UniGene:At.27111 IntAct:Q9C7Y2 STRING:Q9C7Y2 PaxDb:Q9C7Y2
PRIDE:Q9C7Y2 EnsemblPlants:AT1G32580.1 GeneID:840152
KEGG:ath:AT1G32580 TAIR:At1g32580 eggNOG:NOG251524 OMA:GENATKQ
PhylomeDB:Q9C7Y2 ArrayExpress:Q9C7Y2 Genevestigator:Q9C7Y2
Uniprot:Q9C7Y2
Length = 229
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 81/200 (40%), Positives = 115/200 (57%)
Query: 11 LSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFGSGGIVTGPSA 70
L+ TA++ L+S S +TT + + RF + I T
Sbjct: 5 LARSTASRITKRLISTSGATTPSPSYILSRRSTPVFSHAVGFISSLNRFTT--IRTRMDR 62
Query: 71 RGMSTRPATASLNDSSPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDRY 128
G S P S N+S+R P E L GCD+EHWL+VM+KP G+ T+ ++ID Y
Sbjct: 63 SGGSYSPLK-----SGSNFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCY 117
Query: 129 IKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVK 188
++TLA + G E+EA+ KIY+VS + Y+ FG +DEETS KL+ LPGV ++LPDSY+D +
Sbjct: 118 VQTLAKII-GSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQE 176
Query: 189 NKDYGGEPFINGQAVPYDPK 208
NKDYG E F+NG+ V P+
Sbjct: 177 NKDYGAELFVNGEIVQRPPE 196
>UNIPROTKB|Q2R8U1 [details] [associations]
symbol:Os11g0216400 "Os11g0216400 protein" species:39947
"Oryza sativa Japonica Group" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] EMBL:DP000010 EMBL:AP008217
GO:GO:0004252 eggNOG:NOG12793 EMBL:CM000148 RefSeq:NP_001067510.1
UniGene:Os.39944 STRING:Q2R8U1 EnsemblPlants:LOC_Os11g11020.1
GeneID:4350082 KEGG:osa:4350082 OMA:LITMEFP ProtClustDB:CLSN2698490
Uniprot:Q2R8U1
Length = 374
Score = 286 (105.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 55/117 (47%), Positives = 78/117 (66%)
Query: 94 PKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTK 153
P E IL +GCD+ HWL+ ME P+ PTR+E+I+ Y++TLA V G +EA+ ++Y+ ST
Sbjct: 81 PDE-ILFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVV-GSYEEAKKRMYAFSTT 138
Query: 154 HYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYH 210
Y F A++ EE S K + LPGV ++LPDSYL + K+YGG+ + NG P P H
Sbjct: 139 TYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPPVH 195
Score = 57 (25.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 322 QNNYGGAPPPQNSY--GGALPPQNKYGGTPPPQNNYGGTAATAEQ 364
Q NY +PPP S G P+ Y P GG + Q
Sbjct: 218 QGNYQNSPPPYGSQQDGRGYAPRQNYADRPGYSGTSGGYQSQTTQ 262
Score = 46 (21.3 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 340 PPQNKYGGTPPP 351
PPQ Y +PPP
Sbjct: 216 PPQGNYQNSPPP 227
>TAIR|locus:2119782 [details] [associations]
symbol:MORF1 "multiple organellar RNA editing factor 1"
species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:1900864 "mitochondrial RNA modification"
evidence=IMP] [GO:1900865 "chloroplast RNA modification"
evidence=IMP] GO:GO:0005739 GO:GO:0009507 EMBL:CP002687
EMBL:AL021637 EMBL:AL161552 HOGENOM:HOG000243016 EMBL:BT002761
IPI:IPI00534157 PIR:T04886 RefSeq:NP_193735.1 UniGene:At.32756
STRING:O49429 PaxDb:O49429 PRIDE:O49429 EnsemblPlants:AT4G20020.1
GeneID:827747 KEGG:ath:AT4G20020 TAIR:At4g20020 eggNOG:NOG285776
InParanoid:O49429 OMA:HWLITMD PhylomeDB:O49429
ProtClustDB:CLSN2685724 Genevestigator:O49429 GO:GO:1900865
GO:GO:1900864 Uniprot:O49429
Length = 419
Score = 243 (90.6 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 44/108 (40%), Positives = 72/108 (66%)
Query: 95 KETILLDGCDFEHWLVVME--KPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVST 152
++T+L +GCD+ HWL+ M+ K E + +E++ Y +T A +EA+ ++Y+ ST
Sbjct: 77 EDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACST 136
Query: 153 KHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFING 200
Y F A++ E+ S K K+LPGV ++LPDSY+D +NK+YGG+ + NG
Sbjct: 137 TTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENG 184
Score = 50 (22.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 325 YGGAPPPQNSYGGALPPQNKYG------GT--PPP-QNNY 355
YG PP Q GG+ PQ Y GT PPP Q Y
Sbjct: 223 YGQQPPMQGG-GGSYGPQQGYATPGQGQGTQAPPPFQGGY 261
Score = 48 (22.0 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 326 GGAPPPQN----SYGGALPPQNKYGGTPPPQNNY 355
GG+ PQN + G PP GG+ PQ Y
Sbjct: 209 GGSGGPQNFQRNTQYGQQPPMQGGGGSYGPQQGY 242
>TAIR|locus:2156344 [details] [associations]
symbol:MORF4 "AT5G44780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0048481 "ovule development" evidence=RCA]
EMBL:CP002688 GenomeReviews:BA000015_GR eggNOG:NOG12793
EMBL:AB016874 EMBL:AC002342 HOGENOM:HOG000243016 EMBL:BT012578
EMBL:AK221549 IPI:IPI00548630 RefSeq:NP_199291.1 UniGene:At.30053
PaxDb:O48582 PRIDE:O48582 EnsemblPlants:AT5G44780.1 GeneID:834507
KEGG:ath:AT5G44780 TAIR:At5g44780 InParanoid:O48582 OMA:RMSIPGQ
PhylomeDB:O48582 ProtClustDB:CLSN2916734 Genevestigator:O48582
Uniprot:O48582
Length = 723
Score = 229 (85.7 bits), Expect = 2.8e-21, Sum P(3) = 2.8e-21
Identities = 43/105 (40%), Positives = 67/105 (63%)
Query: 101 DGCDFEHWLVVMEKPEGD-PTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFG 159
+GCDF HWL+ M P+ + P+R+E+I + +T A +EA+ KIY++ T Y F
Sbjct: 78 EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQ 137
Query: 160 ALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVP 204
A + K ++LPGV++++PDSY+DV+NK YGG+ + NG P
Sbjct: 138 ATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGDKYENGVITP 182
Score = 37 (18.1 bits), Expect = 2.8e-21, Sum P(3) = 2.8e-21
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 340 PPQNKYGGTPPPQNNYGG 357
PPQ + P +N GG
Sbjct: 510 PPQGNFLQGPQQNHNQGG 527
Score = 37 (18.1 bits), Expect = 2.8e-21, Sum P(3) = 2.8e-21
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 2 ATQIFSRMF-LSNPTATKALASLLSRSFSTTATTI 35
A F R LS P+ + SLL RS +T I
Sbjct: 15 APSYFQRFSTLSRPSDFTPVPSLLPRSVVKQSTAI 49
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 150 (57.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/124 (30%), Positives = 66/124 (53%)
Query: 73 MSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPE-GDPTRDEIIDRYIKT 131
+S RP + N+ K L D +HW+V ++KP G T+ +++D ++
Sbjct: 142 VSIRPEQ-DYSSEKKNYGIGSHKGVSLFDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQL 200
Query: 132 LATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKD 191
L+ V E +A+M +Y VS + + F +DE ++ +L +PGV V+PD+ + NKD
Sbjct: 201 LSKVL-WNEKDAQMCLYHVSWQSDFGFCCDLDERSAVELAGVPGVLAVVPDNSFESLNKD 259
Query: 192 YGGE 195
Y G+
Sbjct: 260 YEGD 263
Score = 147 (56.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 93 PPKETILLDGCDFEHWLVVMEKP-EGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVS 151
PP T+L +W+V+++KP ++ ++D Y++ LA V G E +A++ IY S
Sbjct: 61 PPSSTVLTRN---SYWMVLLDKPPHWVSSKSAMVDYYVEILAKVL-GNEKDAQVSIYDAS 116
Query: 152 TKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYG 193
++ F +DE+ S +L LPGV + P+ + K+YG
Sbjct: 117 FDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYG 158
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 391 294 0.00091 115 3 11 23 0.45 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 615 (65 KB)
Total size of DFA: 232 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.85u 0.13s 23.98t Elapsed: 00:00:01
Total cpu time: 23.86u 0.13s 23.99t Elapsed: 00:00:01
Start: Sat May 11 02:38:18 2013 End: Sat May 11 02:38:19 2013