Query 016358
Match_columns 390
No_of_seqs 434 out of 3124
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 5.1E-25 1.1E-29 179.1 12.7 129 186-315 2-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 3.3E-25 7.1E-30 180.3 10.3 120 193-312 16-141 (146)
3 cd03009 TryX_like_TryX_NRX Try 99.9 4.4E-24 9.6E-29 173.6 12.5 129 26-154 1-131 (131)
4 cd02964 TryX_like_family Trypa 99.9 1.5E-23 3.2E-28 170.6 12.1 126 188-315 4-132 (132)
5 cd03008 TryX_like_RdCVF Trypar 99.9 7.3E-24 1.6E-28 172.4 9.6 118 35-152 18-142 (146)
6 cd02964 TryX_like_family Trypa 99.9 4.4E-22 9.6E-27 161.9 12.0 127 27-154 2-132 (132)
7 KOG2501 Thioredoxin, nucleored 99.9 1.6E-21 3.6E-26 156.4 9.9 124 26-149 15-142 (157)
8 PF08534 Redoxin: Redoxin; In 99.9 4.3E-21 9.4E-26 159.0 12.4 117 179-300 2-131 (146)
9 KOG2501 Thioredoxin, nucleored 99.8 1E-20 2.3E-25 151.8 11.8 121 189-310 19-142 (157)
10 cd02967 mauD Methylamine utili 99.8 2.5E-20 5.4E-25 147.7 12.1 110 184-300 1-112 (114)
11 PF13905 Thioredoxin_8: Thiore 99.8 3.3E-20 7.2E-25 141.9 11.1 93 202-296 1-95 (95)
12 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3.5E-20 7.5E-25 149.1 9.6 116 179-299 1-124 (124)
13 PF13905 Thioredoxin_8: Thiore 99.8 1.6E-19 3.4E-24 138.1 12.7 93 42-135 1-95 (95)
14 PRK14018 trifunctional thiored 99.8 1.1E-19 2.5E-24 175.9 13.7 116 179-299 34-155 (521)
15 PRK15412 thiol:disulfide inter 99.8 4.7E-20 1E-24 158.6 9.7 116 177-300 39-159 (185)
16 PLN02399 phospholipid hydroper 99.8 1.6E-19 3.4E-24 158.8 13.1 121 176-300 72-217 (236)
17 TIGR02187 GlrX_arch Glutaredox 99.8 1.1E-18 2.3E-23 153.9 18.4 176 40-295 17-197 (215)
18 cd03010 TlpA_like_DsbE TlpA-li 99.8 1.3E-19 2.8E-24 146.4 10.2 112 182-299 2-116 (127)
19 PRK03147 thiol-disulfide oxido 99.8 3.9E-19 8.5E-24 151.7 13.5 117 179-299 37-154 (173)
20 cd02969 PRX_like1 Peroxiredoxi 99.8 4.3E-19 9.4E-24 151.0 13.5 117 180-300 1-126 (171)
21 PLN02412 probable glutathione 99.8 1E-19 2.2E-24 153.7 9.5 115 181-299 7-146 (167)
22 cd03012 TlpA_like_DipZ_like Tl 99.8 2E-19 4.3E-24 145.0 9.9 105 192-300 13-122 (126)
23 PTZ00056 glutathione peroxidas 99.8 2.7E-19 5.8E-24 155.0 11.2 118 179-300 15-161 (199)
24 cd00340 GSH_Peroxidase Glutath 99.8 2.2E-19 4.7E-24 149.6 10.0 113 183-300 2-139 (152)
25 PRK00522 tpx lipid hydroperoxi 99.8 7.8E-19 1.7E-23 148.4 13.0 116 179-300 20-147 (167)
26 cd03014 PRX_Atyp2cys Peroxired 99.8 1.1E-18 2.3E-23 144.1 11.9 116 179-300 2-126 (143)
27 TIGR00385 dsbE periplasmic pro 99.8 6.8E-19 1.5E-23 149.8 10.6 115 177-299 34-153 (173)
28 TIGR02661 MauD methylamine deh 99.8 2.5E-18 5.3E-23 148.3 13.8 131 178-329 47-180 (189)
29 cd02967 mauD Methylamine utili 99.8 1.7E-18 3.6E-23 137.1 11.3 109 26-140 3-113 (114)
30 KOG0190 Protein disulfide isom 99.8 6.5E-19 1.4E-23 167.3 9.4 87 25-135 24-111 (493)
31 cd03015 PRX_Typ2cys Peroxiredo 99.8 3.5E-18 7.7E-23 145.5 12.9 119 179-300 1-136 (173)
32 TIGR03137 AhpC peroxiredoxin. 99.8 2.6E-18 5.6E-23 147.9 12.1 120 178-300 3-135 (187)
33 PRK09437 bcp thioredoxin-depen 99.8 1.6E-18 3.6E-23 144.8 10.6 116 179-299 6-135 (154)
34 cd03017 PRX_BCP Peroxiredoxin 99.8 2.9E-18 6.2E-23 141.0 10.8 113 182-299 2-125 (140)
35 PTZ00256 glutathione peroxidas 99.8 7.9E-18 1.7E-22 144.4 12.9 117 180-300 17-164 (183)
36 cd03018 PRX_AhpE_like Peroxire 99.8 6.9E-18 1.5E-22 140.3 12.0 117 179-300 3-130 (149)
37 cd03012 TlpA_like_DipZ_like Tl 99.8 3.1E-18 6.7E-23 138.1 9.2 105 33-140 13-123 (126)
38 TIGR02540 gpx7 putative glutat 99.7 1E-17 2.3E-22 139.7 11.7 111 185-299 4-135 (153)
39 PRK10382 alkyl hydroperoxide r 99.7 2.3E-17 5.1E-22 140.9 12.5 120 178-300 3-135 (187)
40 COG1225 Bcp Peroxiredoxin [Pos 99.7 3.6E-17 7.8E-22 132.9 12.7 116 179-299 6-135 (157)
41 cd02966 TlpA_like_family TlpA- 99.7 1.8E-17 3.9E-22 130.8 10.8 110 186-299 2-113 (116)
42 PF08534 Redoxin: Redoxin; In 99.7 1.7E-17 3.6E-22 137.5 10.3 109 29-141 14-133 (146)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 2.8E-17 6E-22 132.0 10.6 106 184-299 1-108 (123)
44 PRK13190 putative peroxiredoxi 99.7 5.4E-17 1.2E-21 141.2 12.5 118 179-300 4-133 (202)
45 cd02971 PRX_family Peroxiredox 99.7 5.8E-17 1.2E-21 133.2 11.7 114 183-300 2-126 (140)
46 cd03010 TlpA_like_DsbE TlpA-li 99.7 3.7E-17 8E-22 132.0 9.9 109 26-139 6-117 (127)
47 PRK13599 putative peroxiredoxi 99.7 6.6E-17 1.4E-21 141.4 12.2 119 178-299 3-134 (215)
48 cd02968 SCO SCO (an acronym fo 99.7 9.4E-17 2E-21 132.3 12.2 117 183-299 2-139 (142)
49 TIGR01626 ytfJ_HI0045 conserve 99.7 3.2E-17 6.9E-22 138.2 8.4 100 192-299 49-162 (184)
50 PLN02919 haloacid dehalogenase 99.7 7.3E-17 1.6E-21 171.2 13.0 117 179-299 393-518 (1057)
51 PRK15000 peroxidase; Provision 99.7 1.7E-16 3.6E-21 137.6 12.0 120 178-300 3-141 (200)
52 cd02970 PRX_like2 Peroxiredoxi 99.7 1.4E-16 3E-21 132.4 9.9 113 183-300 2-146 (149)
53 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 1.2E-16 2.6E-21 128.4 9.2 109 25-137 7-123 (124)
54 PRK14018 trifunctional thiored 99.7 1.9E-16 4E-21 153.6 12.1 111 25-139 40-156 (521)
55 cd02950 TxlA TRX-like protein 99.7 5E-16 1.1E-20 127.3 12.4 105 200-343 18-122 (142)
56 PTZ00137 2-Cys peroxiredoxin; 99.7 4E-16 8.6E-21 139.1 12.3 121 177-300 68-204 (261)
57 PRK13728 conjugal transfer pro 99.7 1.5E-16 3.3E-21 133.2 8.8 96 181-298 53-151 (181)
58 PRK13191 putative peroxiredoxi 99.7 5.2E-16 1.1E-20 135.8 12.6 119 178-300 8-140 (215)
59 cd00340 GSH_Peroxidase Glutath 99.7 8.9E-17 1.9E-21 133.9 7.4 112 25-140 4-140 (152)
60 cd03016 PRX_1cys Peroxiredoxin 99.7 6.7E-16 1.5E-20 134.6 12.9 118 179-300 1-133 (203)
61 PRK03147 thiol-disulfide oxido 99.7 3.5E-16 7.6E-21 133.4 10.9 111 25-138 43-154 (173)
62 PRK15412 thiol:disulfide inter 99.7 2.5E-16 5.5E-21 135.4 9.4 109 25-140 47-160 (185)
63 PTZ00253 tryparedoxin peroxida 99.7 1E-15 2.2E-20 133.2 13.2 119 178-299 7-142 (199)
64 PTZ00056 glutathione peroxidas 99.7 3.4E-16 7.3E-21 135.7 10.1 114 23-139 19-161 (199)
65 cd02966 TlpA_like_family TlpA- 99.7 5.3E-16 1.2E-20 122.3 10.1 110 26-138 2-113 (116)
66 KOG0191 Thioredoxin/protein di 99.7 2.8E-15 6.2E-20 143.7 16.6 184 41-295 46-230 (383)
67 cd02969 PRX_like1 Peroxiredoxi 99.7 6.6E-16 1.4E-20 131.4 10.4 113 25-140 6-127 (171)
68 PLN02412 probable glutathione 99.6 4.2E-16 9.2E-21 131.6 7.7 114 24-140 10-148 (167)
69 PLN02399 phospholipid hydroper 99.6 8.6E-16 1.9E-20 135.2 9.3 113 25-140 81-218 (236)
70 PRK13189 peroxiredoxin; Provis 99.6 3.8E-15 8.1E-20 131.2 12.9 119 178-300 10-142 (222)
71 cd03017 PRX_BCP Peroxiredoxin 99.6 1.5E-15 3.2E-20 124.8 9.1 111 25-139 5-126 (140)
72 TIGR02661 MauD methylamine deh 99.6 3.8E-15 8.3E-20 128.4 11.6 106 25-138 54-162 (189)
73 PRK00522 tpx lipid hydroperoxi 99.6 3.2E-15 6.9E-20 126.3 10.5 111 25-140 26-148 (167)
74 PTZ00102 disulphide isomerase; 99.6 3.3E-14 7.1E-19 140.9 19.3 240 14-332 220-466 (477)
75 TIGR00385 dsbE periplasmic pro 99.6 2.4E-15 5.1E-20 128.0 9.1 108 25-139 42-154 (173)
76 TIGR02540 gpx7 putative glutat 99.6 1.7E-15 3.7E-20 126.3 8.1 112 26-140 5-137 (153)
77 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.6E-15 5.7E-20 120.4 8.5 103 26-137 3-107 (123)
78 cd02968 SCO SCO (an acronym fo 99.6 5.9E-15 1.3E-19 121.5 10.8 114 25-138 4-139 (142)
79 cd03014 PRX_Atyp2cys Peroxired 99.6 4.1E-15 8.8E-20 122.7 9.5 110 26-140 9-127 (143)
80 cd02985 TRX_CDSP32 TRX family, 99.6 9.8E-15 2.1E-19 113.1 10.8 74 200-299 13-86 (103)
81 PRK10606 btuE putative glutath 99.6 3.7E-14 8E-19 120.4 14.5 81 182-267 4-93 (183)
82 cd02971 PRX_family Peroxiredox 99.6 8E-15 1.7E-19 120.4 10.1 114 25-141 4-128 (140)
83 KOG0910 Thioredoxin-like prote 99.6 5.6E-15 1.2E-19 117.7 8.6 86 202-329 61-146 (150)
84 PRK09437 bcp thioredoxin-depen 99.6 7.2E-15 1.6E-19 122.8 9.1 110 25-138 12-135 (154)
85 cd02954 DIM1 Dim1 family; Dim1 99.6 1.3E-14 2.8E-19 112.4 9.6 71 202-300 14-84 (114)
86 cd02950 TxlA TRX-like protein 99.6 5.2E-15 1.1E-19 121.3 7.6 78 38-139 16-93 (142)
87 PTZ00256 glutathione peroxidas 99.6 9.6E-15 2.1E-19 125.3 9.2 113 25-140 22-165 (183)
88 cd03018 PRX_AhpE_like Peroxire 99.6 1.5E-14 3.3E-19 120.1 9.9 112 25-140 9-131 (149)
89 cd03015 PRX_Typ2cys Peroxiredo 99.6 1.6E-14 3.5E-19 123.0 9.5 111 27-140 9-137 (173)
90 cd02954 DIM1 Dim1 family; Dim1 99.6 1.9E-14 4.2E-19 111.4 8.6 73 41-140 13-85 (114)
91 TIGR02738 TrbB type-F conjugat 99.5 3.6E-14 7.8E-19 117.0 10.6 86 192-298 44-133 (153)
92 cd02985 TRX_CDSP32 TRX family, 99.5 2.1E-14 4.5E-19 111.2 8.4 74 39-137 12-85 (103)
93 cd02999 PDI_a_ERp44_like PDIa 99.5 1.9E-14 4.2E-19 110.6 7.9 68 199-293 15-82 (100)
94 PHA02278 thioredoxin-like prot 99.5 4.4E-14 9.6E-19 108.6 9.4 75 201-299 13-87 (103)
95 cd02963 TRX_DnaJ TRX domain, D 99.5 5.9E-14 1.3E-18 110.2 10.2 73 200-299 22-94 (111)
96 PRK13728 conjugal transfer pro 99.5 2.4E-14 5.1E-19 120.0 8.4 95 24-138 54-152 (181)
97 cd02970 PRX_like2 Peroxiredoxi 99.5 3.5E-14 7.6E-19 117.8 9.3 111 25-139 4-146 (149)
98 cd02948 TRX_NDPK TRX domain, T 99.5 8.1E-14 1.8E-18 107.7 10.4 71 201-299 16-86 (102)
99 TIGR03137 AhpC peroxiredoxin. 99.5 2.8E-14 6.1E-19 122.8 8.6 110 28-140 13-136 (187)
100 COG1225 Bcp Peroxiredoxin [Pos 99.5 6.8E-14 1.5E-18 113.9 9.9 109 25-137 12-134 (157)
101 TIGR01626 ytfJ_HI0045 conserve 99.5 3.3E-14 7.1E-19 119.9 8.0 100 35-141 52-165 (184)
102 cd02956 ybbN ybbN protein fami 99.5 1.2E-13 2.5E-18 105.7 10.3 71 201-299 11-81 (96)
103 PRK10382 alkyl hydroperoxide r 99.5 5.4E-14 1.2E-18 120.2 9.3 110 28-140 16-136 (187)
104 KOG0908 Thioredoxin-like prote 99.5 3.5E-14 7.5E-19 121.1 7.6 123 201-367 20-168 (288)
105 PLN02919 haloacid dehalogenase 99.5 4.9E-14 1.1E-18 149.8 10.4 106 31-139 407-519 (1057)
106 PHA02278 thioredoxin-like prot 99.5 8E-14 1.7E-18 107.2 8.1 76 41-139 13-88 (103)
107 cd02999 PDI_a_ERp44_like PDIa 99.5 5.8E-14 1.3E-18 107.9 7.0 69 38-133 14-82 (100)
108 COG3118 Thioredoxin domain-con 99.5 1.5E-13 3.1E-18 121.5 9.4 77 201-312 42-118 (304)
109 PRK13190 putative peroxiredoxi 99.5 1.3E-13 2.8E-18 120.0 9.1 111 27-139 12-133 (202)
110 PRK13599 putative peroxiredoxi 99.5 1.4E-13 3E-18 120.5 8.3 118 20-139 4-135 (215)
111 cd03013 PRX5_like Peroxiredoxi 99.5 3.5E-13 7.6E-18 112.2 10.3 117 179-300 1-137 (155)
112 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.7E-13 3.7E-18 105.8 7.9 81 29-136 4-85 (101)
113 KOG0907 Thioredoxin [Posttrans 99.5 2.9E-13 6.3E-18 104.1 8.7 74 202-311 21-94 (106)
114 cd02953 DsbDgamma DsbD gamma f 99.5 4.9E-13 1.1E-17 103.8 9.6 76 201-299 10-89 (104)
115 cd02951 SoxW SoxW family; SoxW 99.4 6E-13 1.3E-17 107.0 10.3 85 201-299 12-101 (125)
116 KOG0910 Thioredoxin-like prote 99.4 1.2E-13 2.7E-18 110.1 6.0 69 41-136 60-128 (150)
117 cd02956 ybbN ybbN protein fami 99.4 3.4E-13 7.4E-18 103.1 8.1 69 41-136 11-79 (96)
118 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.4E-13 7.3E-18 105.5 8.0 69 40-135 27-96 (113)
119 PRK09381 trxA thioredoxin; Pro 99.4 1.3E-12 2.7E-17 102.4 10.9 70 202-299 21-90 (109)
120 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 6E-13 1.3E-17 102.7 8.8 72 200-299 16-87 (101)
121 cd02948 TRX_NDPK TRX domain, T 99.4 5.8E-13 1.3E-17 103.0 8.7 71 41-138 16-86 (102)
122 cd02959 ERp19 Endoplasmic reti 99.4 3.8E-13 8.3E-18 106.3 7.6 96 200-325 17-114 (117)
123 cd03006 PDI_a_EFP1_N PDIa fami 99.4 9.1E-13 2E-17 103.1 9.4 68 201-296 28-96 (113)
124 cd02963 TRX_DnaJ TRX domain, D 99.4 5.5E-13 1.2E-17 104.7 8.1 72 40-137 22-93 (111)
125 TIGR02738 TrbB type-F conjugat 99.4 4E-13 8.8E-18 110.8 7.4 87 32-137 43-133 (153)
126 cd02962 TMX2 TMX2 family; comp 99.4 1.2E-12 2.5E-17 107.8 9.4 90 201-317 46-141 (152)
127 cd03016 PRX_1cys Peroxiredoxin 99.4 1.2E-12 2.7E-17 114.1 10.0 113 26-140 8-134 (203)
128 PF13098 Thioredoxin_2: Thiore 99.4 1.3E-12 2.7E-17 103.0 9.2 95 201-299 4-98 (112)
129 PTZ00137 2-Cys peroxiredoxin; 99.4 8.2E-13 1.8E-17 117.9 9.0 119 20-140 70-205 (261)
130 cd02994 PDI_a_TMX PDIa family, 99.4 2.3E-12 5E-17 99.5 10.0 68 201-296 16-83 (101)
131 COG0450 AhpC Peroxiredoxin [Po 99.4 3.9E-12 8.5E-17 105.8 11.8 120 177-299 3-139 (194)
132 TIGR02740 TraF-like TraF-like 99.4 9.2E-13 2E-17 119.3 8.8 88 193-298 157-244 (271)
133 PRK10996 thioredoxin 2; Provis 99.4 3.4E-12 7.3E-17 104.3 11.2 71 201-299 51-121 (139)
134 PRK15000 peroxidase; Provision 99.4 9.3E-13 2E-17 114.2 8.4 102 36-139 27-141 (200)
135 cd03002 PDI_a_MPD1_like PDI fa 99.4 1.7E-12 3.6E-17 101.7 9.0 70 201-295 17-86 (109)
136 PRK13191 putative peroxiredoxi 99.4 1.2E-12 2.6E-17 114.6 8.9 112 27-140 17-141 (215)
137 KOG0907 Thioredoxin [Posttrans 99.4 7.4E-13 1.6E-17 101.9 6.6 76 35-138 14-89 (106)
138 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 1.7E-12 3.7E-17 100.8 8.5 70 41-136 18-87 (104)
139 cd02996 PDI_a_ERp44 PDIa famil 99.4 1.3E-12 2.9E-17 102.1 7.6 75 40-136 16-91 (108)
140 PTZ00253 tryparedoxin peroxida 99.4 1.9E-12 4.1E-17 112.7 9.2 107 30-139 23-143 (199)
141 cd02957 Phd_like Phosducin (Ph 99.4 2.1E-12 4.5E-17 101.8 8.6 68 202-299 24-91 (113)
142 cd02986 DLP Dim1 family, Dim1- 99.4 2.1E-12 4.4E-17 99.3 8.3 71 201-299 13-83 (114)
143 PTZ00062 glutaredoxin; Provisi 99.4 3.2E-12 7E-17 110.0 9.9 60 43-138 18-77 (204)
144 cd02986 DLP Dim1 family, Dim1- 99.4 2.2E-12 4.8E-17 99.1 7.8 70 41-137 13-82 (114)
145 cd02953 DsbDgamma DsbD gamma f 99.4 4.1E-12 8.8E-17 98.6 9.5 77 40-138 9-89 (104)
146 PRK13189 peroxiredoxin; Provis 99.4 3.1E-12 6.8E-17 112.7 9.8 112 26-139 18-142 (222)
147 TIGR01130 ER_PDI_fam protein d 99.4 3.4E-11 7.4E-16 118.9 18.3 241 14-331 205-454 (462)
148 cd03002 PDI_a_MPD1_like PDI fa 99.4 2.8E-12 6.1E-17 100.4 8.5 69 41-133 17-85 (109)
149 cd03000 PDI_a_TMX3 PDIa family 99.4 6.4E-12 1.4E-16 97.5 10.4 70 201-295 14-83 (104)
150 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 4.1E-12 8.8E-17 98.6 9.3 71 202-299 19-89 (104)
151 cd02989 Phd_like_TxnDC9 Phosdu 99.4 1E-11 2.3E-16 97.6 11.4 69 202-299 22-90 (113)
152 cd02993 PDI_a_APS_reductase PD 99.4 4.8E-12 1E-16 99.1 9.4 72 201-297 20-92 (109)
153 cd03005 PDI_a_ERp46 PDIa famil 99.4 3.4E-12 7.4E-17 98.6 8.4 71 204-299 18-88 (102)
154 cd02949 TRX_NTR TRX domain, no 99.4 8.4E-12 1.8E-16 95.5 10.5 71 201-299 12-82 (97)
155 cd02951 SoxW SoxW family; SoxW 99.3 3.7E-12 8E-17 102.4 8.6 86 40-138 11-101 (125)
156 cd02993 PDI_a_APS_reductase PD 99.3 4.9E-12 1.1E-16 99.0 9.0 71 40-134 19-90 (109)
157 cd02965 HyaE HyaE family; HyaE 99.3 8E-12 1.7E-16 96.2 9.7 71 201-299 26-98 (111)
158 cd02992 PDI_a_QSOX PDIa family 99.3 1.1E-11 2.4E-16 97.6 10.6 77 202-301 19-95 (114)
159 cd02959 ERp19 Endoplasmic reti 99.3 2.2E-12 4.7E-17 102.0 6.2 79 35-138 12-92 (117)
160 cd02992 PDI_a_QSOX PDIa family 99.3 9.5E-12 2.1E-16 98.0 9.8 73 42-136 19-91 (114)
161 PRK10606 btuE putative glutath 99.3 4.6E-12 1E-16 107.7 8.2 78 25-106 7-93 (183)
162 PF00085 Thioredoxin: Thioredo 99.3 1.8E-11 4E-16 94.5 10.8 86 202-329 17-102 (103)
163 cd02996 PDI_a_ERp44 PDIa famil 99.3 1.3E-11 2.9E-16 96.4 10.0 71 202-296 18-90 (108)
164 PF13098 Thioredoxin_2: Thiore 99.3 5.5E-12 1.2E-16 99.3 7.8 96 40-138 3-98 (112)
165 cd02994 PDI_a_TMX PDIa family, 99.3 5.6E-12 1.2E-16 97.3 7.6 78 30-135 5-83 (101)
166 TIGR02740 TraF-like TraF-like 99.3 3.5E-12 7.5E-17 115.6 7.3 85 35-136 159-243 (271)
167 cd03065 PDI_b_Calsequestrin_N 99.3 1.3E-11 2.9E-16 97.2 9.7 70 203-298 28-101 (120)
168 PRK09381 trxA thioredoxin; Pro 99.3 7.1E-12 1.5E-16 98.2 8.1 85 26-137 3-89 (109)
169 PLN00410 U5 snRNP protein, DIM 99.3 2E-11 4.3E-16 98.4 10.8 70 202-299 23-94 (142)
170 PTZ00102 disulphide isomerase; 99.3 3.7E-11 8.1E-16 119.1 15.2 84 28-134 34-118 (477)
171 TIGR01126 pdi_dom protein disu 99.3 1.1E-11 2.4E-16 95.6 9.0 70 201-295 12-81 (102)
172 cd02962 TMX2 TMX2 family; comp 99.3 1.1E-11 2.4E-16 101.9 9.4 74 41-140 46-125 (152)
173 PRK10996 thioredoxin 2; Provis 99.3 5E-12 1.1E-16 103.3 7.2 71 41-138 51-121 (139)
174 cd03005 PDI_a_ERp46 PDIa famil 99.3 5.4E-12 1.2E-16 97.5 7.0 69 44-136 18-86 (102)
175 cd03000 PDI_a_TMX3 PDIa family 99.3 8.2E-12 1.8E-16 96.9 7.9 69 41-133 14-82 (104)
176 PF02630 SCO1-SenC: SCO1/SenC; 99.3 7.2E-11 1.6E-15 100.3 13.5 119 180-299 29-170 (174)
177 cd02984 TRX_PICOT TRX domain, 99.3 2.6E-11 5.5E-16 92.8 9.7 70 202-299 14-83 (97)
178 cd02997 PDI_a_PDIR PDIa family 99.3 2.3E-11 5E-16 94.2 9.5 75 201-299 16-90 (104)
179 COG3118 Thioredoxin domain-con 99.3 9E-12 2E-16 110.2 7.3 71 40-137 41-111 (304)
180 PTZ00443 Thioredoxin domain-co 99.3 2.5E-11 5.5E-16 106.3 9.9 70 202-299 52-121 (224)
181 cd02984 TRX_PICOT TRX domain, 99.3 2E-11 4.4E-16 93.4 8.1 70 42-138 14-83 (97)
182 PF00085 Thioredoxin: Thioredo 99.3 1.7E-11 3.7E-16 94.7 7.6 70 41-137 16-85 (103)
183 TIGR01068 thioredoxin thioredo 99.3 6.7E-11 1.4E-15 91.0 10.6 70 202-299 14-83 (101)
184 PLN00410 U5 snRNP protein, DIM 99.3 1.8E-11 3.9E-16 98.7 7.6 68 41-135 22-90 (142)
185 cd02965 HyaE HyaE family; HyaE 99.2 1.7E-11 3.8E-16 94.3 6.9 72 40-138 25-98 (111)
186 cd02997 PDI_a_PDIR PDIa family 99.2 2.2E-11 4.8E-16 94.4 7.6 74 40-136 15-88 (104)
187 PTZ00051 thioredoxin; Provisio 99.2 2.3E-11 5E-16 93.3 7.2 70 41-138 17-86 (98)
188 cd02987 Phd_like_Phd Phosducin 99.2 4.2E-11 9E-16 101.5 9.3 68 202-299 83-150 (175)
189 PF02630 SCO1-SenC: SCO1/SenC; 99.2 1.1E-10 2.4E-15 99.1 11.8 116 22-137 31-169 (174)
190 cd02952 TRP14_like Human TRX-r 99.2 2.5E-11 5.5E-16 95.3 7.3 81 40-139 19-107 (119)
191 cd02949 TRX_NTR TRX domain, no 99.2 3.4E-11 7.3E-16 92.2 7.8 70 41-137 12-81 (97)
192 cd02952 TRP14_like Human TRX-r 99.2 2.3E-11 5E-16 95.5 6.9 79 201-299 20-106 (119)
193 PTZ00051 thioredoxin; Provisio 99.2 3.3E-11 7.2E-16 92.4 7.6 69 202-299 18-86 (98)
194 cd02955 SSP411 TRX domain, SSP 99.2 2.5E-10 5.5E-15 90.6 12.8 82 201-301 14-98 (124)
195 cd03001 PDI_a_P5 PDIa family, 99.2 9.7E-11 2.1E-15 90.6 10.2 65 202-293 18-82 (103)
196 cd02989 Phd_like_TxnDC9 Phosdu 99.2 2.6E-11 5.6E-16 95.3 6.9 70 41-138 21-90 (113)
197 cd02957 Phd_like Phosducin (Ph 99.2 3.1E-11 6.7E-16 95.1 7.2 68 42-138 24-91 (113)
198 TIGR01126 pdi_dom protein disu 99.2 3.9E-11 8.5E-16 92.5 7.5 70 41-134 12-81 (102)
199 PTZ00443 Thioredoxin domain-co 99.2 4.1E-11 8.9E-16 104.9 8.1 69 41-136 51-119 (224)
200 cd02998 PDI_a_ERp38 PDIa famil 99.2 7.9E-11 1.7E-15 91.3 9.0 72 202-297 18-89 (105)
201 cd03065 PDI_b_Calsequestrin_N 99.2 2.3E-11 5E-16 95.8 5.9 69 42-136 27-100 (120)
202 cd02998 PDI_a_ERp38 PDIa famil 99.2 5.8E-11 1.3E-15 92.1 8.0 70 41-134 17-87 (105)
203 TIGR01130 ER_PDI_fam protein d 99.2 1.1E-09 2.4E-14 108.1 18.2 72 40-135 16-87 (462)
204 cd02961 PDI_a_family Protein D 99.2 7.7E-11 1.7E-15 90.4 7.2 72 201-297 14-85 (101)
205 cd03013 PRX5_like Peroxiredoxi 99.2 1.4E-10 3E-15 96.6 8.9 110 27-140 9-138 (155)
206 cd03001 PDI_a_P5 PDIa family, 99.2 1.3E-10 2.8E-15 89.8 7.8 66 41-133 17-82 (103)
207 cd02961 PDI_a_family Protein D 99.1 1.4E-10 3.1E-15 88.8 7.4 69 40-133 13-82 (101)
208 TIGR01295 PedC_BrcD bacterioci 99.1 2.4E-10 5.2E-15 90.9 8.4 81 41-139 22-106 (122)
209 cd02955 SSP411 TRX domain, SSP 99.1 2.1E-10 4.6E-15 91.0 7.8 86 35-139 8-97 (124)
210 TIGR01068 thioredoxin thioredo 99.1 2.3E-10 5E-15 87.9 7.6 69 41-136 13-81 (101)
211 cd02988 Phd_like_VIAF Phosduci 99.1 4.1E-10 8.9E-15 96.7 9.5 66 202-299 102-167 (192)
212 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 2.5E-10 5.4E-15 88.4 7.2 68 41-133 17-84 (104)
213 TIGR00424 APS_reduc 5'-adenyly 99.1 2.5E-10 5.4E-15 109.9 8.6 70 40-133 369-438 (463)
214 cd02975 PfPDO_like_N Pyrococcu 99.1 8.7E-10 1.9E-14 86.7 10.1 62 203-292 23-84 (113)
215 cd02975 PfPDO_like_N Pyrococcu 99.1 4.5E-10 9.8E-15 88.3 8.3 65 41-132 21-85 (113)
216 KOG0908 Thioredoxin-like prote 99.1 1.4E-10 3E-15 99.3 5.3 74 35-136 14-87 (288)
217 TIGR01295 PedC_BrcD bacterioci 99.1 1.4E-09 3E-14 86.6 10.5 78 202-299 23-105 (122)
218 KOG2792 Putative cytochrome C 99.1 3.6E-09 7.8E-14 91.3 13.6 120 184-303 120-261 (280)
219 cd02987 Phd_like_Phd Phosducin 99.1 4E-10 8.8E-15 95.5 7.5 68 42-138 83-150 (175)
220 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 5.8E-10 1.3E-14 86.3 7.5 67 202-294 18-84 (104)
221 COG1999 Uncharacterized protei 99.0 6.9E-09 1.5E-13 90.3 14.8 115 185-299 49-186 (207)
222 TIGR00424 APS_reduc 5'-adenyly 99.0 1.3E-09 2.7E-14 105.1 10.5 68 201-292 370-437 (463)
223 PTZ00062 glutaredoxin; Provisi 99.0 8.9E-10 1.9E-14 94.9 8.3 60 203-299 18-77 (204)
224 TIGR00411 redox_disulf_1 small 99.0 4.6E-09 9.9E-14 77.5 10.6 62 205-296 2-63 (82)
225 PRK00293 dipZ thiol:disulfide 99.0 2E-09 4.4E-14 107.9 10.3 74 200-297 472-548 (571)
226 KOG0190 Protein disulfide isom 99.0 1.2E-09 2.6E-14 104.6 8.1 88 184-296 24-111 (493)
227 cd02960 AGR Anterior Gradient 99.0 2.5E-09 5.5E-14 84.8 8.0 100 201-332 22-124 (130)
228 cd02947 TRX_family TRX family; 99.0 5.8E-09 1.3E-13 78.3 9.5 68 203-299 11-78 (93)
229 PLN02309 5'-adenylylsulfate re 98.9 3.4E-09 7.3E-14 102.1 9.1 67 41-131 364-431 (457)
230 PLN02309 5'-adenylylsulfate re 98.9 6.1E-09 1.3E-13 100.3 10.6 68 201-293 364-432 (457)
231 COG0386 BtuE Glutathione perox 98.9 2.2E-08 4.8E-13 79.8 11.8 113 184-300 6-143 (162)
232 COG0450 AhpC Peroxiredoxin [Po 98.9 4.5E-09 9.8E-14 87.7 7.8 102 35-138 26-139 (194)
233 COG1999 Uncharacterized protei 98.9 1.9E-08 4.1E-13 87.6 11.5 113 25-137 49-185 (207)
234 KOG4277 Uncharacterized conser 98.9 1.5E-09 3.3E-14 95.3 4.1 75 42-139 43-117 (468)
235 PRK00293 dipZ thiol:disulfide 98.9 3.1E-09 6.7E-14 106.6 6.9 79 35-136 467-548 (571)
236 cd02988 Phd_like_VIAF Phosduci 98.9 7.1E-09 1.5E-13 89.0 7.4 67 42-139 102-168 (192)
237 TIGR02187 GlrX_arch Glutaredox 98.8 1.8E-08 4E-13 88.7 10.2 70 201-297 18-90 (215)
238 KOG2792 Putative cytochrome C 98.8 2.9E-08 6.4E-13 85.7 11.0 116 24-139 120-258 (280)
239 cd02947 TRX_family TRX family; 98.8 8.8E-09 1.9E-13 77.3 7.0 67 42-136 10-76 (93)
240 TIGR00411 redox_disulf_1 small 98.8 1.5E-08 3.2E-13 74.8 7.7 58 45-128 2-59 (82)
241 cd02958 UAS UAS family; UAS is 98.8 4.7E-08 1E-12 77.0 11.0 74 201-299 16-93 (114)
242 cd02973 TRX_GRX_like Thioredox 98.8 2.9E-08 6.4E-13 70.1 8.3 64 205-299 2-65 (67)
243 KOG0855 Alkyl hydroperoxide re 98.8 1.6E-08 3.6E-13 81.1 7.4 113 177-296 63-187 (211)
244 TIGR00412 redox_disulf_2 small 98.8 1.8E-08 4E-13 73.0 7.0 59 46-136 2-60 (76)
245 cd02982 PDI_b'_family Protein 98.8 2E-08 4.3E-13 77.5 7.7 65 41-131 11-77 (103)
246 KOG0852 Alkyl hydroperoxide re 98.8 3.4E-08 7.3E-13 80.2 9.0 115 182-299 9-139 (196)
247 KOG0912 Thiol-disulfide isomer 98.8 2.3E-08 5E-13 88.2 8.6 93 203-331 14-106 (375)
248 KOG0191 Thioredoxin/protein di 98.8 1.2E-08 2.6E-13 98.0 7.6 151 42-230 162-315 (383)
249 TIGR00412 redox_disulf_2 small 98.8 2.6E-08 5.5E-13 72.3 7.4 60 207-299 3-62 (76)
250 PF07649 C1_3: C1-like domain; 98.8 1.9E-09 4E-14 62.7 0.9 29 355-383 1-30 (30)
251 cd02982 PDI_b'_family Protein 98.8 4.9E-08 1.1E-12 75.3 9.1 64 202-292 12-77 (103)
252 cd03007 PDI_a_ERp29_N PDIa fam 98.8 6.2E-08 1.3E-12 75.5 9.4 67 201-290 17-87 (116)
253 PHA02125 thioredoxin-like prot 98.8 5.1E-08 1.1E-12 70.5 8.4 57 206-299 2-58 (75)
254 KOG0912 Thiol-disulfide isomer 98.8 1.9E-08 4.2E-13 88.7 7.2 76 42-139 13-88 (375)
255 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 6.4E-08 1.4E-12 72.3 8.5 71 198-299 8-78 (89)
256 PHA02125 thioredoxin-like prot 98.7 2E-08 4.4E-13 72.7 5.6 51 45-127 1-51 (75)
257 cd02960 AGR Anterior Gradient 98.7 2.1E-08 4.6E-13 79.6 6.1 78 35-139 16-96 (130)
258 cd03007 PDI_a_ERp29_N PDIa fam 98.7 3.6E-08 7.7E-13 76.8 6.2 68 40-133 16-90 (116)
259 PF13899 Thioredoxin_7: Thiore 98.7 3.9E-08 8.4E-13 72.5 6.1 68 37-131 12-82 (82)
260 KOG1731 FAD-dependent sulfhydr 98.7 5.6E-09 1.2E-13 99.8 1.9 69 43-132 58-126 (606)
261 KOG1651 Glutathione peroxidase 98.7 5.5E-07 1.2E-11 72.9 12.1 116 183-301 14-153 (171)
262 cd02973 TRX_GRX_like Thioredox 98.6 1E-07 2.2E-12 67.3 6.9 57 45-128 2-58 (67)
263 KOG4277 Uncharacterized conser 98.6 4.3E-08 9.3E-13 86.3 5.7 76 203-302 44-119 (468)
264 TIGR03143 AhpF_homolog putativ 98.6 1.5E-06 3.1E-11 87.7 17.5 182 37-299 361-542 (555)
265 cd02958 UAS UAS family; UAS is 98.6 1.3E-07 2.8E-12 74.5 7.9 80 35-138 10-93 (114)
266 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.3E-07 2.8E-12 70.7 6.7 71 37-137 7-77 (89)
267 COG2077 Tpx Peroxiredoxin [Pos 98.6 1.1E-06 2.3E-11 70.1 11.4 116 179-300 20-147 (158)
268 PF13728 TraF: F plasmid trans 98.6 3.8E-07 8.2E-12 79.9 9.7 82 200-299 118-199 (215)
269 COG0386 BtuE Glutathione perox 98.5 5E-07 1.1E-11 72.2 8.3 112 26-140 8-144 (162)
270 smart00594 UAS UAS domain. 98.5 9.9E-07 2.1E-11 70.3 10.1 69 201-294 26-97 (122)
271 PF14595 Thioredoxin_9: Thiore 98.5 3.9E-07 8.4E-12 73.0 6.4 72 200-299 39-113 (129)
272 PF13728 TraF: F plasmid trans 98.5 4.9E-07 1.1E-11 79.2 7.4 85 35-136 113-197 (215)
273 PF03107 C1_2: C1 domain; Int 98.4 1.1E-07 2.4E-12 55.1 1.6 29 355-383 1-30 (30)
274 smart00594 UAS UAS domain. 98.4 1.5E-06 3.1E-11 69.3 8.7 75 35-133 20-97 (122)
275 TIGR02739 TraF type-F conjugat 98.4 1.7E-06 3.6E-11 77.2 9.9 103 199-332 147-249 (256)
276 PF13899 Thioredoxin_7: Thiore 98.4 7.2E-07 1.6E-11 65.7 6.4 64 201-292 16-82 (82)
277 KOG0852 Alkyl hydroperoxide re 98.3 1.4E-06 3.1E-11 70.9 7.0 108 28-137 18-138 (196)
278 PF00255 GSHPx: Glutathione pe 98.3 3.2E-06 6.9E-11 65.0 8.6 60 185-248 3-63 (108)
279 PRK13703 conjugal pilus assemb 98.3 2.5E-06 5.4E-11 75.6 8.9 101 200-331 141-241 (248)
280 TIGR02739 TraF type-F conjugat 98.3 1.7E-06 3.7E-11 77.1 6.9 85 35-136 143-227 (256)
281 KOG0855 Alkyl hydroperoxide re 98.2 3.5E-06 7.5E-11 68.0 7.1 105 25-133 71-185 (211)
282 PF00255 GSHPx: Glutathione pe 98.2 8.3E-06 1.8E-10 62.7 8.8 59 26-87 4-63 (108)
283 PF00837 T4_deiodinase: Iodoth 98.2 5.4E-06 1.2E-10 72.0 8.3 135 177-329 73-235 (237)
284 COG0526 TrxA Thiol-disulfide i 98.2 1.1E-05 2.4E-10 62.9 9.3 68 197-290 27-96 (127)
285 PRK13703 conjugal pilus assemb 98.2 2.9E-06 6.4E-11 75.1 6.4 85 35-136 136-220 (248)
286 COG0526 TrxA Thiol-disulfide i 98.2 6.9E-06 1.5E-10 64.1 7.7 70 36-130 26-97 (127)
287 cd01659 TRX_superfamily Thiore 98.2 9.2E-06 2E-10 55.8 7.4 63 206-293 1-63 (69)
288 KOG1651 Glutathione peroxidase 98.2 1.1E-05 2.3E-10 65.6 8.5 114 25-140 16-153 (171)
289 COG2143 Thioredoxin-related pr 98.1 1.8E-05 3.9E-10 63.4 8.9 87 36-136 36-129 (182)
290 COG4232 Thiol:disulfide interc 98.1 3.5E-06 7.6E-11 82.0 5.8 79 37-136 469-548 (569)
291 PF14595 Thioredoxin_9: Thiore 98.1 2.5E-06 5.4E-11 68.3 3.8 74 37-137 36-112 (129)
292 KOG0854 Alkyl hydroperoxide re 98.1 2.1E-05 4.5E-10 64.1 8.7 118 179-299 8-146 (224)
293 KOG1731 FAD-dependent sulfhydr 98.1 2.6E-06 5.7E-11 81.9 4.0 69 203-293 58-126 (606)
294 PF03190 Thioredox_DsbH: Prote 98.1 3.1E-05 6.8E-10 63.8 9.7 80 201-300 36-119 (163)
295 cd01659 TRX_superfamily Thiore 98.1 1.8E-05 3.9E-10 54.2 7.3 63 46-132 1-63 (69)
296 COG2143 Thioredoxin-related pr 98.0 0.00012 2.5E-09 58.8 10.5 88 201-299 41-131 (182)
297 COG4232 Thiol:disulfide interc 98.0 2.1E-05 4.6E-10 76.6 7.6 75 201-297 473-548 (569)
298 PF03190 Thioredox_DsbH: Prote 98.0 1.8E-05 3.8E-10 65.3 6.0 78 35-138 30-118 (163)
299 PRK11509 hydrogenase-1 operon 97.9 0.00015 3.2E-09 57.8 10.7 85 205-330 37-123 (132)
300 KOG0914 Thioredoxin-like prote 97.9 2.1E-05 4.5E-10 66.6 5.2 92 202-322 144-242 (265)
301 PRK15317 alkyl hydroperoxide r 97.9 0.00093 2E-08 67.0 17.8 68 201-299 115-182 (517)
302 cd02340 ZZ_NBR1_like Zinc fing 97.8 9.4E-06 2E-10 51.2 1.7 30 356-385 2-32 (43)
303 TIGR02196 GlrX_YruB Glutaredox 97.8 9.8E-05 2.1E-09 52.6 7.0 56 46-129 2-57 (74)
304 cd02991 UAS_ETEA UAS family, E 97.8 0.00019 4.1E-09 56.4 9.0 73 201-299 16-95 (116)
305 TIGR02180 GRX_euk Glutaredoxin 97.8 6.1E-05 1.3E-09 55.4 5.8 59 206-288 1-59 (84)
306 TIGR03140 AhpF alkyl hydropero 97.8 0.0018 3.9E-08 64.9 17.7 67 201-298 116-182 (515)
307 TIGR02200 GlrX_actino Glutared 97.7 0.0002 4.4E-09 51.6 7.9 63 206-299 2-65 (77)
308 PF06110 DUF953: Eukaryotic pr 97.7 7.7E-05 1.7E-09 58.4 5.7 77 201-297 18-103 (119)
309 PF06110 DUF953: Eukaryotic pr 97.7 0.0001 2.2E-09 57.7 6.3 77 40-135 17-102 (119)
310 PRK11657 dsbG disulfide isomer 97.7 0.00052 1.1E-08 61.8 11.5 93 201-299 116-235 (251)
311 TIGR02180 GRX_euk Glutaredoxin 97.7 0.00012 2.5E-09 53.9 6.0 60 46-128 1-60 (84)
312 COG2077 Tpx Peroxiredoxin [Pos 97.7 0.00077 1.7E-08 54.0 10.7 116 26-146 27-154 (158)
313 TIGR02196 GlrX_YruB Glutaredox 97.7 0.0002 4.3E-09 50.9 7.0 55 206-289 2-56 (74)
314 cd02339 ZZ_Mind_bomb Zinc fing 97.6 2.9E-05 6.4E-10 49.3 1.7 30 356-385 2-33 (45)
315 TIGR02200 GlrX_actino Glutared 97.6 0.00027 5.7E-09 51.0 6.4 62 46-137 2-64 (77)
316 KOG3425 Uncharacterized conser 97.5 0.00027 5.9E-09 54.1 5.8 72 201-292 24-104 (128)
317 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.0011 2.3E-08 57.6 9.6 95 35-136 70-184 (197)
318 PRK10877 protein disulfide iso 97.4 0.0011 2.5E-08 58.8 9.7 94 35-136 100-214 (232)
319 PRK10877 protein disulfide iso 97.4 0.0032 7E-08 56.0 12.4 88 201-297 106-214 (232)
320 KOG0914 Thioredoxin-like prote 97.4 0.00017 3.6E-09 61.2 3.8 72 41-138 143-220 (265)
321 cd02991 UAS_ETEA UAS family, E 97.3 0.00061 1.3E-08 53.5 6.2 72 35-133 10-87 (116)
322 PRK11657 dsbG disulfide isomer 97.3 0.0022 4.7E-08 57.8 10.5 96 35-135 110-232 (251)
323 PRK11200 grxA glutaredoxin 1; 97.3 0.0018 3.9E-08 47.8 7.9 65 206-297 3-69 (85)
324 PF13192 Thioredoxin_3: Thiore 97.2 0.0013 2.9E-08 47.4 6.7 57 210-299 6-62 (76)
325 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0027 5.9E-08 55.1 9.6 89 201-297 76-184 (197)
326 cd02972 DsbA_family DsbA famil 97.2 0.0017 3.6E-08 48.7 7.1 82 46-130 1-91 (98)
327 PF00462 Glutaredoxin: Glutare 97.1 0.0027 5.8E-08 43.4 7.1 55 46-128 1-55 (60)
328 PF00462 Glutaredoxin: Glutare 97.1 0.0028 6.2E-08 43.2 7.2 55 206-289 1-55 (60)
329 cd02342 ZZ_UBA_plant Zinc fing 97.0 0.00032 6.9E-09 43.3 1.4 29 356-384 2-32 (43)
330 KOG0911 Glutaredoxin-related p 97.0 0.0035 7.6E-08 53.9 8.2 68 41-136 16-83 (227)
331 PRK11509 hydrogenase-1 operon 97.0 0.003 6.5E-08 50.4 7.0 71 42-138 34-106 (132)
332 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.0 0.00042 9E-09 44.7 1.6 31 355-385 1-35 (48)
333 PRK11200 grxA glutaredoxin 1; 96.9 0.0028 6.1E-08 46.7 5.9 39 46-88 3-41 (85)
334 cd02249 ZZ Zinc finger, ZZ typ 96.8 0.00068 1.5E-08 43.6 1.8 32 355-386 1-33 (46)
335 PF13192 Thioredoxin_3: Thiore 96.8 0.0048 1E-07 44.4 6.4 58 48-137 4-61 (76)
336 cd03419 GRX_GRXh_1_2_like Glut 96.8 0.0026 5.7E-08 46.3 5.0 57 206-288 2-58 (82)
337 cd02344 ZZ_HERC2 Zinc finger, 96.8 0.00082 1.8E-08 42.6 1.8 29 356-384 2-32 (45)
338 PF04592 SelP_N: Selenoprotein 96.8 0.0096 2.1E-07 51.7 8.7 115 182-300 9-126 (238)
339 PF02114 Phosducin: Phosducin; 96.7 0.0071 1.5E-07 54.7 8.2 68 202-299 146-213 (265)
340 cd02343 ZZ_EF Zinc finger, ZZ 96.7 0.00077 1.7E-08 43.1 1.3 29 356-384 2-31 (48)
341 KOG0854 Alkyl hydroperoxide re 96.7 0.0081 1.8E-07 49.4 7.4 111 24-136 12-144 (224)
342 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.0087 1.9E-07 42.2 6.9 55 46-128 2-56 (73)
343 cd02972 DsbA_family DsbA famil 96.7 0.0048 1E-07 46.1 5.9 81 206-291 1-91 (98)
344 KOG3425 Uncharacterized conser 96.7 0.0044 9.5E-08 47.6 5.4 73 41-132 24-105 (128)
345 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0068 1.5E-07 44.1 5.9 57 46-127 2-58 (82)
346 cd02335 ZZ_ADA2 Zinc finger, Z 96.6 0.0014 3E-08 42.8 1.9 30 355-384 1-32 (49)
347 cd02334 ZZ_dystrophin Zinc fin 96.6 0.0015 3.3E-08 42.3 2.0 29 356-384 2-32 (49)
348 KOG0911 Glutaredoxin-related p 96.5 0.0023 5.1E-08 54.9 3.3 68 201-297 16-83 (227)
349 TIGR02190 GlrX-dom Glutaredoxi 96.5 0.011 2.4E-07 42.8 6.5 58 42-128 6-63 (79)
350 PF13848 Thioredoxin_6: Thiore 96.5 0.087 1.9E-06 44.7 13.2 68 202-296 94-164 (184)
351 PF00569 ZZ: Zinc finger, ZZ t 96.4 0.00095 2.1E-08 42.9 0.4 32 353-384 3-36 (46)
352 TIGR02183 GRXA Glutaredoxin, G 96.4 0.0085 1.9E-07 44.3 5.6 60 46-128 2-63 (86)
353 PF00837 T4_deiodinase: Iodoth 96.4 0.0061 1.3E-07 53.3 5.4 113 21-140 76-218 (237)
354 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.02 4.4E-07 40.2 7.3 55 206-289 2-56 (73)
355 PHA03050 glutaredoxin; Provisi 96.4 0.0082 1.8E-07 46.4 5.4 61 46-128 15-75 (108)
356 smart00291 ZnF_ZZ Zinc-binding 96.3 0.0026 5.7E-08 40.4 1.7 31 354-384 4-35 (44)
357 TIGR02189 GlrX-like_plant Glut 96.1 0.017 3.7E-07 44.0 6.0 59 46-130 10-68 (99)
358 cd02066 GRX_family Glutaredoxi 96.1 0.037 8E-07 38.6 7.4 60 206-297 2-61 (72)
359 PF05988 DUF899: Bacterial pro 96.1 0.018 4E-07 49.3 6.6 105 28-136 51-168 (211)
360 PF09695 YtfJ_HI0045: Bacteria 96.1 0.11 2.4E-06 42.4 10.6 120 193-328 28-158 (160)
361 PF05988 DUF899: Bacterial pro 96.1 0.03 6.5E-07 48.1 7.6 111 183-298 46-169 (211)
362 cd02066 GRX_family Glutaredoxi 96.0 0.027 5.8E-07 39.3 6.4 55 46-128 2-56 (72)
363 PF11009 DUF2847: Protein of u 96.0 0.05 1.1E-06 41.5 7.9 75 41-138 18-93 (105)
364 TIGR02183 GRXA Glutaredoxin, G 96.0 0.015 3.3E-07 42.9 5.1 59 206-288 2-62 (86)
365 cd03023 DsbA_Com1_like DsbA fa 96.0 0.014 3E-07 47.9 5.4 41 41-85 4-44 (154)
366 COG1331 Highly conserved prote 96.0 0.037 7.9E-07 55.6 8.9 76 201-299 42-124 (667)
367 cd02338 ZZ_PCMF_like Zinc fing 95.9 0.0058 1.3E-07 39.7 2.1 29 356-384 2-32 (49)
368 cd03029 GRX_hybridPRX5 Glutare 95.9 0.037 8.1E-07 39.2 6.5 55 46-130 3-57 (72)
369 cd03027 GRX_DEP Glutaredoxin ( 95.8 0.05 1.1E-06 38.6 7.0 55 46-128 3-57 (73)
370 cd02345 ZZ_dah Zinc finger, ZZ 95.8 0.0074 1.6E-07 39.2 2.2 29 356-384 2-32 (49)
371 PRK10329 glutaredoxin-like pro 95.7 0.053 1.2E-06 39.5 6.8 54 46-128 3-56 (81)
372 TIGR02181 GRX_bact Glutaredoxi 95.7 0.031 6.7E-07 40.4 5.6 54 47-128 2-55 (79)
373 PHA03050 glutaredoxin; Provisi 95.7 0.022 4.7E-07 44.1 4.9 66 206-297 15-80 (108)
374 cd03418 GRX_GRXb_1_3_like Glut 95.7 0.039 8.5E-07 39.3 6.0 54 46-127 2-56 (75)
375 TIGR02194 GlrX_NrdH Glutaredox 95.7 0.05 1.1E-06 38.5 6.4 53 47-128 2-54 (72)
376 TIGR02190 GlrX-dom Glutaredoxi 95.6 0.042 9.2E-07 39.8 5.9 62 203-297 7-68 (79)
377 PF13462 Thioredoxin_4: Thiore 95.5 0.05 1.1E-06 45.1 7.0 54 35-89 5-58 (162)
378 COG0695 GrxC Glutaredoxin and 95.3 0.092 2E-06 38.1 6.8 57 46-129 3-60 (80)
379 PF02114 Phosducin: Phosducin; 95.2 0.023 5E-07 51.4 4.1 68 41-137 145-212 (265)
380 TIGR02189 GlrX-like_plant Glut 95.2 0.034 7.3E-07 42.3 4.4 21 206-226 10-30 (99)
381 cd03023 DsbA_Com1_like DsbA fa 95.1 0.042 9.1E-07 45.0 5.4 31 202-232 5-35 (154)
382 cd03418 GRX_GRXb_1_3_like Glut 95.1 0.1 2.2E-06 37.0 6.7 55 206-290 2-57 (75)
383 PF11009 DUF2847: Protein of u 95.1 0.15 3.3E-06 38.9 7.6 75 202-300 19-94 (105)
384 TIGR02181 GRX_bact Glutaredoxi 95.0 0.021 4.6E-07 41.2 2.8 54 207-290 2-55 (79)
385 TIGR03143 AhpF_homolog putativ 95.0 0.043 9.2E-07 55.6 5.9 62 40-128 474-535 (555)
386 cd02337 ZZ_CBP Zinc finger, ZZ 94.9 0.0099 2.2E-07 37.0 0.7 30 355-385 1-31 (41)
387 KOG3414 Component of the U4/U6 94.9 0.19 4.1E-06 39.1 7.5 64 41-130 22-85 (142)
388 cd03027 GRX_DEP Glutaredoxin ( 94.8 0.14 3E-06 36.3 6.7 55 206-290 3-57 (73)
389 PF04592 SelP_N: Selenoprotein 94.8 0.19 4.1E-06 43.9 8.4 111 27-138 11-125 (238)
390 PRK15317 alkyl hydroperoxide r 94.7 0.056 1.2E-06 54.3 5.8 62 40-128 114-175 (517)
391 cd03029 GRX_hybridPRX5 Glutare 94.6 0.14 3E-06 36.2 6.1 55 206-291 3-57 (72)
392 PF13462 Thioredoxin_4: Thiore 94.6 0.13 2.7E-06 42.7 6.8 51 195-247 5-55 (162)
393 TIGR00365 monothiol glutaredox 94.5 0.18 4E-06 38.1 7.0 59 42-128 11-73 (97)
394 PRK10638 glutaredoxin 3; Provi 94.4 0.21 4.6E-06 36.4 6.8 60 46-136 4-63 (83)
395 KOG0913 Thiol-disulfide isomer 94.3 0.018 3.9E-07 49.8 1.0 69 204-299 41-109 (248)
396 cd03019 DsbA_DsbA DsbA family, 94.3 0.064 1.4E-06 45.3 4.4 42 41-85 14-55 (178)
397 cd03028 GRX_PICOT_like Glutare 94.2 0.082 1.8E-06 39.4 4.4 60 41-128 6-69 (90)
398 PF05176 ATP-synt_10: ATP10 pr 94.2 0.45 9.7E-06 42.8 9.8 118 180-299 98-232 (252)
399 KOG1752 Glutaredoxin and relat 94.2 0.19 4E-06 38.5 6.2 63 46-136 16-78 (104)
400 COG0678 AHP1 Peroxiredoxin [Po 94.1 0.31 6.8E-06 39.3 7.5 116 179-300 5-145 (165)
401 KOG4582 Uncharacterized conser 94.1 0.022 4.9E-07 51.8 1.3 32 354-385 152-185 (278)
402 KOG3414 Component of the U4/U6 94.0 0.36 7.9E-06 37.6 7.4 62 202-290 23-84 (142)
403 PRK10329 glutaredoxin-like pro 94.0 0.27 5.9E-06 35.8 6.6 54 206-289 3-56 (81)
404 TIGR02194 GlrX_NrdH Glutaredox 93.9 0.22 4.7E-06 35.2 5.9 53 207-289 2-54 (72)
405 cd03028 GRX_PICOT_like Glutare 93.8 0.074 1.6E-06 39.6 3.4 60 202-291 7-70 (90)
406 PRK10638 glutaredoxin 3; Provi 93.7 0.095 2.1E-06 38.3 3.9 60 206-297 4-63 (83)
407 COG4312 Uncharacterized protei 93.7 0.17 3.8E-06 43.4 5.8 94 183-281 52-153 (247)
408 PF00130 C1_1: Phorbol esters/ 93.6 0.05 1.1E-06 36.0 1.9 34 352-385 9-45 (53)
409 TIGR00365 monothiol glutaredox 93.6 0.35 7.7E-06 36.5 6.8 58 203-290 12-73 (97)
410 PF13848 Thioredoxin_6: Thiore 93.5 0.14 3.1E-06 43.4 5.2 95 12-133 63-162 (184)
411 TIGR03140 AhpF alkyl hydropero 93.4 0.14 3.1E-06 51.4 5.8 63 39-128 114-176 (515)
412 KOG0913 Thiol-disulfide isomer 93.1 0.014 3E-07 50.5 -1.7 66 45-136 42-107 (248)
413 COG4312 Uncharacterized protei 93.0 0.18 3.8E-06 43.3 4.7 89 28-120 57-153 (247)
414 KOG3507 DNA-directed RNA polym 92.9 0.039 8.5E-07 36.3 0.5 27 353-379 19-48 (62)
415 cd03019 DsbA_DsbA DsbA family, 92.5 0.2 4.2E-06 42.3 4.5 41 201-245 14-54 (178)
416 PRK10824 glutaredoxin-4; Provi 92.1 0.41 8.9E-06 37.3 5.5 65 41-136 13-81 (115)
417 cd00029 C1 Protein kinase C co 92.0 0.13 2.9E-06 33.3 2.3 34 353-386 10-46 (50)
418 KOG1672 ATP binding protein [P 91.9 0.29 6.3E-06 41.3 4.6 69 202-299 84-152 (211)
419 PF02966 DIM1: Mitosis protein 91.6 2.3 5E-05 33.7 9.1 43 41-86 19-61 (133)
420 KOG1752 Glutaredoxin and relat 91.5 0.83 1.8E-05 34.9 6.4 63 206-297 16-78 (104)
421 COG0695 GrxC Glutaredoxin and 91.2 0.39 8.4E-06 34.8 4.2 20 206-225 3-22 (80)
422 COG1331 Highly conserved prote 91.2 0.31 6.7E-06 49.2 4.8 84 35-137 36-123 (667)
423 KOG2603 Oligosaccharyltransfer 90.7 3.1 6.7E-05 38.0 10.2 79 198-297 56-141 (331)
424 PRK10954 periplasmic protein d 90.0 0.32 7E-06 42.4 3.5 42 40-84 35-79 (207)
425 PRK10824 glutaredoxin-4; Provi 89.8 0.43 9.4E-06 37.2 3.6 25 203-227 15-43 (115)
426 KOG1672 ATP binding protein [P 89.5 0.42 9.2E-06 40.3 3.5 68 41-136 83-150 (211)
427 PF05768 DUF836: Glutaredoxin- 89.3 0.87 1.9E-05 33.0 4.8 56 46-130 2-57 (81)
428 PRK12759 bifunctional gluaredo 88.8 0.98 2.1E-05 43.9 6.1 35 46-89 4-38 (410)
429 COG4545 Glutaredoxin-related p 88.5 1.1 2.4E-05 31.4 4.4 70 207-298 5-77 (85)
430 smart00109 C1 Protein kinase C 88.4 0.2 4.3E-06 32.2 0.7 35 352-386 9-45 (49)
431 COG4545 Glutaredoxin-related p 87.8 1.3 2.9E-05 31.1 4.5 69 47-136 5-76 (85)
432 COG0678 AHP1 Peroxiredoxin [Po 87.4 2.1 4.7E-05 34.6 6.1 87 30-119 22-115 (165)
433 PF02966 DIM1: Mitosis protein 87.3 3.4 7.5E-05 32.7 7.1 60 202-289 20-79 (133)
434 PRK10954 periplasmic protein d 86.9 0.73 1.6E-05 40.2 3.7 41 201-245 36-79 (207)
435 KOG2603 Oligosaccharyltransfer 86.6 4.7 0.0001 36.9 8.5 78 38-136 56-141 (331)
436 cd03073 PDI_b'_ERp72_ERp57 PDI 86.0 4.1 9E-05 31.5 7.1 51 57-133 33-88 (111)
437 cd02336 ZZ_RSC8 Zinc finger, Z 85.9 0.6 1.3E-05 29.6 1.9 30 355-384 1-31 (45)
438 PF07449 HyaE: Hydrogenase-1 e 85.8 0.97 2.1E-05 34.7 3.3 27 272-299 71-97 (107)
439 cd02983 P5_C P5 family, C-term 85.7 7.3 0.00016 31.1 8.6 51 219-295 41-93 (130)
440 PF13778 DUF4174: Domain of un 84.6 7.3 0.00016 30.5 7.9 89 197-299 3-94 (118)
441 PF13911 AhpC-TSA_2: AhpC/TSA 84.0 4 8.6E-05 31.6 6.3 16 285-300 96-111 (115)
442 PF05768 DUF836: Glutaredoxin- 84.0 2.3 4.9E-05 30.8 4.5 56 206-291 2-57 (81)
443 KOG4301 Beta-dystrobrevin [Cyt 83.7 0.3 6.5E-06 44.6 -0.3 34 351-384 237-272 (434)
444 cd02983 P5_C P5 family, C-term 83.3 3.6 7.8E-05 32.9 5.8 67 42-133 20-92 (130)
445 PRK12759 bifunctional gluaredo 82.8 1.8 3.8E-05 42.1 4.5 21 206-226 4-24 (410)
446 cd03073 PDI_b'_ERp72_ERp57 PDI 82.1 7.2 0.00016 30.2 6.9 52 217-294 33-88 (111)
447 KOG0541 Alkyl hydroperoxide re 80.9 4.8 0.0001 32.9 5.5 101 194-300 34-151 (171)
448 cd03060 GST_N_Omega_like GST_N 80.6 3.8 8.2E-05 28.5 4.5 59 208-298 3-61 (71)
449 KOG2640 Thioredoxin [Function 78.9 0.49 1.1E-05 43.0 -0.7 74 203-303 77-150 (319)
450 PF07449 HyaE: Hydrogenase-1 e 78.9 3.6 7.8E-05 31.6 4.1 68 42-136 26-95 (107)
451 cd03072 PDI_b'_ERp44 PDIb' fam 78.4 10 0.00022 29.3 6.7 51 57-133 29-84 (111)
452 PF09695 YtfJ_HI0045: Bacteria 77.1 20 0.00043 29.5 8.1 100 35-138 30-140 (160)
453 PHA03075 glutaredoxin-like pro 77.1 3.3 7.1E-05 31.9 3.3 108 203-329 2-113 (123)
454 KOG4236 Serine/threonine prote 76.6 0.47 1E-05 46.5 -1.6 50 339-388 140-193 (888)
455 KOG0696 Serine/threonine prote 76.6 0.63 1.4E-05 44.2 -0.7 30 354-383 56-88 (683)
456 PF01216 Calsequestrin: Calseq 76.0 11 0.00023 35.2 7.0 73 202-301 51-129 (383)
457 PF13832 zf-HC5HC2H_2: PHD-zin 75.9 1.8 4E-05 33.3 1.9 34 353-387 54-89 (110)
458 cd03031 GRX_GRX_like Glutaredo 75.5 8.1 0.00018 31.6 5.6 28 53-89 15-42 (147)
459 PF01216 Calsequestrin: Calseq 75.0 8.4 0.00018 35.9 6.0 84 28-137 27-126 (383)
460 COG1651 DsbG Protein-disulfide 74.9 8.1 0.00018 34.4 6.1 47 28-74 69-116 (244)
461 PF13909 zf-H2C2_5: C2H2-type 73.7 1.8 3.9E-05 23.0 0.9 10 369-378 1-10 (24)
462 PF13778 DUF4174: Domain of un 73.2 28 0.00061 27.2 8.0 89 37-138 3-94 (118)
463 PRK12496 hypothetical protein; 73.0 2.3 5.1E-05 35.5 1.9 26 354-379 127-154 (164)
464 PF13743 Thioredoxin_5: Thiore 72.0 6.8 0.00015 33.1 4.6 36 48-86 2-37 (176)
465 PF06053 DUF929: Domain of unk 71.3 15 0.00033 32.8 6.6 33 41-73 57-89 (249)
466 smart00659 RPOLCX RNA polymera 70.9 3.1 6.8E-05 26.2 1.7 25 354-378 2-29 (44)
467 KOG2507 Ubiquitin regulatory p 70.6 32 0.00069 33.0 8.8 28 272-299 66-93 (506)
468 PF10571 UPF0547: Uncharacteri 70.2 2.5 5.5E-05 23.3 1.0 23 356-378 2-24 (26)
469 cd03072 PDI_b'_ERp44 PDIb' fam 70.2 22 0.00048 27.4 6.7 51 217-294 29-84 (111)
470 KOG3170 Conserved phosducin-li 69.3 20 0.00044 30.7 6.5 32 202-233 111-142 (240)
471 cd02978 KaiB_like KaiB-like fa 69.3 28 0.0006 24.6 6.3 63 204-292 2-64 (72)
472 PHA03075 glutaredoxin-like pro 69.3 7 0.00015 30.2 3.5 29 43-71 2-30 (123)
473 cd03060 GST_N_Omega_like GST_N 68.9 12 0.00027 25.8 4.7 32 48-86 3-34 (71)
474 PF06953 ArsD: Arsenical resis 67.9 49 0.0011 26.1 8.2 61 220-299 25-85 (123)
475 PF03604 DNA_RNApol_7kD: DNA d 67.6 1.7 3.7E-05 25.3 -0.0 24 355-378 1-27 (32)
476 PRK11788 tetratricopeptide rep 67.6 7.4 0.00016 37.1 4.3 26 352-377 352-378 (389)
477 KOG4286 Dystrophin-like protei 67.2 2.1 4.6E-05 43.5 0.5 28 357-384 606-635 (966)
478 cd03036 ArsC_like Arsenate Red 67.2 6.1 0.00013 30.5 3.0 32 47-87 2-33 (111)
479 COG1651 DsbG Protein-disulfide 67.2 17 0.00036 32.3 6.3 45 189-233 71-115 (244)
480 cd00570 GST_N_family Glutathio 66.7 23 0.00049 23.5 5.7 32 48-86 3-34 (71)
481 PF06053 DUF929: Domain of unk 65.9 14 0.00031 33.0 5.4 32 201-232 57-88 (249)
482 cd03031 GRX_GRX_like Glutaredo 64.7 6.4 0.00014 32.2 2.8 14 213-226 15-28 (147)
483 cd02977 ArsC_family Arsenate R 64.6 8.8 0.00019 29.2 3.4 31 47-86 2-32 (105)
484 PLN03098 LPA1 LOW PSII ACCUMUL 64.4 77 0.0017 31.0 10.3 119 191-323 285-441 (453)
485 PF05176 ATP-synt_10: ATP10 pr 64.0 86 0.0019 28.2 10.0 104 31-138 109-232 (252)
486 PF09673 TrbC_Ftype: Type-F co 63.6 15 0.00033 28.5 4.6 21 111-131 60-80 (113)
487 cd03067 PDI_b_PDIR_N PDIb fami 63.5 34 0.00074 25.9 6.0 68 43-135 20-91 (112)
488 TIGR01617 arsC_related transcr 63.5 17 0.00036 28.3 4.9 32 48-88 3-34 (117)
489 PHA00626 hypothetical protein 62.9 5.4 0.00012 26.3 1.6 14 366-379 21-34 (59)
490 KOG3170 Conserved phosducin-li 62.8 21 0.00046 30.6 5.5 79 28-138 93-176 (240)
491 PF13911 AhpC-TSA_2: AhpC/TSA 62.7 13 0.00027 28.8 4.1 54 64-121 2-55 (115)
492 KOG4498 Uncharacterized conser 62.6 16 0.00035 31.0 4.7 56 188-246 35-92 (197)
493 PF07191 zinc-ribbons_6: zinc- 62.2 3.8 8.3E-05 28.6 0.9 27 347-375 11-37 (70)
494 KOG0541 Alkyl hydroperoxide re 61.7 11 0.00023 31.0 3.4 50 35-86 35-88 (171)
495 cd03036 ArsC_like Arsenate Red 61.7 5.3 0.00012 30.9 1.7 20 207-226 2-21 (111)
496 cd03041 GST_N_2GST_N GST_N fam 61.2 17 0.00036 25.7 4.2 21 207-227 3-23 (77)
497 PRK09301 circadian clock prote 60.7 41 0.00089 25.6 6.2 67 201-293 4-70 (103)
498 cd02978 KaiB_like KaiB-like fa 59.1 35 0.00077 24.1 5.3 63 44-131 2-64 (72)
499 COG2761 FrnE Predicted dithiol 58.6 30 0.00064 30.5 5.9 41 43-84 4-45 (225)
500 TIGR02654 circ_KaiB circadian 58.3 52 0.0011 24.2 6.2 65 203-293 3-67 (87)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.92 E-value=5.1e-25 Score=179.14 Aligned_cols=129 Identities=49% Similarity=1.009 Sum_probs=118.2
Q ss_pred eEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccc
Q 016358 186 YVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 265 (390)
Q Consensus 186 f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 265 (390)
|..+.+|+.+++++++||+|||+||++||++|+.++|.|.++++++++ ...+++|++|++|.+.+++.++++.++|..+
T Consensus 2 ~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 2 FLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred cccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 455889999999999999999999999999999999999999999975 2347999999999999999999999999888
Q ss_pred cCCc-hHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCC
Q 016358 266 PYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF 315 (390)
Q Consensus 266 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~ 315 (390)
|+.. +....+++.|++.++|+++|||++|+|+.++++.+...+|+..|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999997
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.92 E-value=3.3e-25 Score=180.26 Aligned_cols=120 Identities=28% Similarity=0.561 Sum_probs=106.3
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcc----cCCceEEEEEecCCCHHHHHHhhhcCC--ccccc
Q 016358 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP 266 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 266 (390)
+.+++++++||+|+|+|||+||++|+.++|.|.++|+++++. ...+++||+|+.|.+.+.+.++++.++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988752 124799999999998888999999887 87888
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016358 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
+..+....+++.|++.++|+++|||++|+|+.++|+..+..+|...
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8776667899999999999999999999999999999888888554
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=4.4e-24 Score=173.60 Aligned_cols=129 Identities=47% Similarity=1.009 Sum_probs=118.3
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
++|.+.+|+ +++++++||+|||+||++||++|+.++|.|.++++++++.+.+++|++|++|.+.+.+++++.+++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 468899999 9999999999999999999999999999999999999876445999999999999999999999999888
Q ss_pred ecCh-hHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCC
Q 016358 105 PFDE-TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPF 154 (390)
Q Consensus 105 ~~~~-~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~ 154 (390)
|+.. +....+++.|++.++|+++++|++|+++.+++.+++..++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8844 5667899999999999999999999999999999999988888875
No 4
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.90 E-value=1.5e-23 Score=170.56 Aligned_cols=126 Identities=48% Similarity=0.944 Sum_probs=110.8
Q ss_pred EeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC-Cccccc
Q 016358 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIP 266 (390)
Q Consensus 188 l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~ 266 (390)
+|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+++..+++++ +|+.++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 3444 69999999999999999999999999999999999999975 12479999999999988999999988 688888
Q ss_pred CCc-hHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhh-cCccCCCC
Q 016358 267 YED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF 315 (390)
Q Consensus 267 ~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~-~g~~~~p~ 315 (390)
+.. .....+++.|+|.++|+++|||++|+|+.+++...... +|+.+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 765 34567888999999999999999999999998888776 89999986
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=7.3e-24 Score=172.37 Aligned_cols=118 Identities=25% Similarity=0.603 Sum_probs=105.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhC-----CCcEEEEEEecCCChhHHHHHHHhCC--CcceecC
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKCMP--WLAVPFD 107 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~-----~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~~~ 107 (390)
+++++++||+|+|+|||+||++|+.++|.|.++|++++++ ..++++|+|+.|.+.+.+++|+++++ |+.+|+.
T Consensus 18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 5778999999999999999999999999999999988763 23599999999999888999999988 8888886
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCC
Q 016358 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAY 152 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~ 152 (390)
.+....++++|++.++|+++++|++|+++.+++...|..++..++
T Consensus 98 ~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 98 DEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 665678999999999999999999999999999999988775543
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=4.4e-22 Score=161.89 Aligned_cols=127 Identities=43% Similarity=0.924 Sum_probs=110.7
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC-CCcce
Q 016358 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAV 104 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~ 104 (390)
+|+|.+ + +++++++||+++|+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+.+++|++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 466766 5 99999999999999999999999999999999999998753349999999999988999999998 68888
Q ss_pred ecCh-hHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccc-cCCCCCCC
Q 016358 105 PFDE-TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIED-YGADAYPF 154 (390)
Q Consensus 105 ~~~~-~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~-~~~~~~~~ 154 (390)
++.. .....+.+.|++.++|+++++|++|+++.+++.+.+.. ++..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8744 45578889999999999999999999999988777666 77777775
No 7
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=156.38 Aligned_cols=124 Identities=40% Similarity=0.734 Sum_probs=115.5
Q ss_pred ceeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh--CCC
Q 016358 26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPW 101 (390)
Q Consensus 26 ~~l~~~~g~-~~l~-~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~ 101 (390)
..|...+|. +..+ .+.||+|.++|.|.|||||+.++|.|.++|+++++++..++||+||.|.+.+++..|+.. ++|
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 778999999 6666 689999999999999999999999999999999999889999999999999999999995 669
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCC
Q 016358 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGA 149 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~ 149 (390)
+.+|+..+..+++.++|++.++|++++++++|+.+.+++...+...+.
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999888887653
No 8
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.86 E-value=4.3e-21 Score=159.04 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=103.1
Q ss_pred hhccCCceEE-e--CCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016358 179 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~--~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|+++|+|++ + .+|+++++++++||+++|+||++ |||+|+.++|.|.+++++|++ .++.+++|+.+.+.. ..
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR 77 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence 4888999998 5 99999999999999999999999 999999999999999999986 789999999998776 77
Q ss_pred HhhhcCCcccccCCchHHHHHHHHcccc---------ccceEEEECCCCcEEeeC
Q 016358 255 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 300 (390)
++++..+ ..+|+..|....+.+.|++. ++|+++|||++|+|+++.
T Consensus 78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 7777644 56777777788999999988 999999999999999983
No 9
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.85 E-value=1e-20 Score=151.76 Aligned_cols=121 Identities=45% Similarity=0.849 Sum_probs=112.2
Q ss_pred eCCCCeeeec-ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc--CCcccc
Q 016358 189 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI 265 (390)
Q Consensus 189 ~~~g~~~~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~ 265 (390)
..+|..+..+ .++||+|+++|.|.||+||+.+.|.|.++|++.++ ....++||+||.|.+.+++..++.. .+|+.+
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 7777777777 78999999999999999999999999999999986 4457999999999999999999984 669999
Q ss_pred cCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCc
Q 016358 266 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310 (390)
Q Consensus 266 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~ 310 (390)
|+.++..+++.++|+|.++|++.++.++|+++..+||..+...|.
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999885
No 10
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.84 E-value=2.5e-20 Score=147.69 Aligned_cols=110 Identities=20% Similarity=0.350 Sum_probs=95.0
Q ss_pred CceEE-eCCCCeeeecccC-CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCC
Q 016358 184 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 261 (390)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++. .++.++.++ +.+.++..++.+.++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~ 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG 75 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence 67888 8999999999997 9999999999999999999999999988875 468888775 667788888888777
Q ss_pred cccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016358 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...+|... +..+.+.|++.++|++++||++|+|++++
T Consensus 76 ~~~~p~~~--~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 76 LEAFPYVL--SAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCCcEEe--cHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 65566654 34688999999999999999999999874
No 11
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.83 E-value=3.3e-20 Score=141.91 Aligned_cols=93 Identities=41% Similarity=0.833 Sum_probs=84.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC--CcccccCCchHHHHHHHHc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 279 (390)
||+++|+||++||++|++++|.|.+++++|++ ..+++||+|+.|.+.+++.++++.+ +|..+++..+....+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence 79999999999999999999999999999983 4899999999999999999999977 8999999988888999999
Q ss_pred cccccceEEEECCCCcE
Q 016358 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|.++|+++|+|++|+|
T Consensus 79 ~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T-TSSSEEEEEETTSBE
T ss_pred CCCcCCEEEEECCCCCC
Confidence 99999999999999987
No 12
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.82 E-value=3.5e-20 Score=149.12 Aligned_cols=116 Identities=30% Similarity=0.566 Sum_probs=103.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.+++++++||++||.||++ ||++|+..++.|++++++|++ .++++++|+.|.. ++..++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~~-~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDDP-EEIKQF 76 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSSH-HHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeecccccc-cchhhh
Confidence 5889999999 999999999999999999999999 999999999999999999986 7899999999754 456666
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016358 257 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
....+ ..+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 66544 67777778889999999998 99999999999999974
No 13
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.82 E-value=1.6e-19 Score=138.12 Aligned_cols=93 Identities=38% Similarity=0.853 Sum_probs=84.1
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC--CCcceecChhHHHHHHHhcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 119 (390)
||+++|+||++||++|++++|.|.++++++++ +.++++|+|++|.+.+.+++++++. +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 89999999999999999999999999999994 4459999999999999999999988 89999998887889999999
Q ss_pred cCCCCeEEEEcCCCcc
Q 016358 120 VDRIPSLIPLASDGTL 135 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i 135 (390)
+.++|+++++|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999985
No 14
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=175.85 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=102.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-----CCHHH
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~ 252 (390)
.+..+|+|++ +.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++. .+++||+|+++ .+.++
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDGD 108 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHHH
Confidence 3567899999 9999999988 899999999999999999999999999999875 67999999873 23467
Q ss_pred HHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 253 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.++++.+++..+|+..|.+..+++.|+|.++|+++|||++|+|+.+
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 77777777777788888888899999999999999999999999988
No 15
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.82 E-value=4.7e-20 Score=158.59 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=95.6
Q ss_pred HHhhccCCceEE-eCC--CCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016358 177 QLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~--g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
..+|.++|+|++ +.+ |+.++++.+ +||+++|+||++||++|++++|.|.++++ .+++|++|+.|.+.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHHH
Confidence 456889999999 777 467777665 79999999999999999999999988743 3578999999888777
Q ss_pred HHHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016358 253 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
..++++.++. .+| ...|....+.+.|++.++|++++||++|+|+++.
T Consensus 112 ~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 112 AISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred HHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 8888876653 333 3445667888999999999999999999999883
No 16
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.82 E-value=1.6e-19 Score=158.79 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=95.2
Q ss_pred hHHhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------
Q 016358 176 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD------- 247 (390)
Q Consensus 176 ~~l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d------- 247 (390)
....|..+|+|++ +.+|+.+++++++||+|||+||++||++|..++|.|++++++|++ .+++||+|++|
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEP 148 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCC
Confidence 3456888999999 999999999999999999999999999999999999999999986 78999999975
Q ss_pred CCHHHHHHhhh-cCCcccccCCc--hHHH-HHHHHcc-------------ccccceEEEECCCCcEEeeC
Q 016358 248 RDHKEFDLNHS-IMPWLAIPYED--RARQ-DLCRIFN-------------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~-~l~~~~~-------------v~~~P~~~lid~~G~v~~~~ 300 (390)
.+.++..+++. .++ +.+|+.. |.+. .+...|+ +...|+++|||++|+|+.+.
T Consensus 149 ~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 149 GSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred CCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 24466777763 333 4556542 2222 2323332 34579999999999999983
No 17
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.82 E-value=1.1e-18 Score=153.86 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=112.5
Q ss_pred cCCCEEEEEEec---CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 40 CGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 40 ~~gk~vll~F~~---~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
.++...++.|++ +||++|+.+.|.++++++++.. +++..+++|.++. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~---------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED---------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc---------------------HHHHH
Confidence 344444555776 9999999999999999998842 6688888886664 79999
Q ss_pred hcCcCCCCeEEEEcCCCcccc-ccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCC-e
Q 016358 117 RYRVDRIPSLIPLASDGTLIE-EDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-K 194 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~-~ 194 (390)
+|+|.++||+++++ +|+.+. +.. .. +........+..........+ . ++.+ .
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~~~~~~-G~---------~~~~~l~~~i~~~~~~~~~~~-------------~--L~~~~~ 125 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDGGIRYT-GI---------PAGYEFAALIEDIVRVSQGEP-------------G--LSEKTV 125 (215)
T ss_pred HcCCCccCEEEEEe-CCeeeEEEEe-ec---------CCHHHHHHHHHHHHHhcCCCC-------------C--CCHHHH
Confidence 99999999999996 676542 211 11 000111111111100000000 0 0000 0
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016358 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
-.+..+.+.++++.||++||++|+...+.++++..++ .++.+..+..+. ...
T Consensus 126 ~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----~~i~~~~vD~~~-----------------------~~~ 177 (215)
T TIGR02187 126 ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----DKILGEMIEANE-----------------------NPD 177 (215)
T ss_pred HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----CceEEEEEeCCC-----------------------CHH
Confidence 0112234455677799999999999999888887664 345555555554 467
Q ss_pred HHHHccccccceEEEECCCCc
Q 016358 275 LCRIFNIKGIPALVLIGPDGK 295 (390)
Q Consensus 275 l~~~~~v~~~P~~~lid~~G~ 295 (390)
+++.|+|.++||+++. .+|+
T Consensus 178 ~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 178 LAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHHhCCccCCEEEEe-cCCE
Confidence 8899999999999887 4554
No 18
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.81 E-value=1.3e-19 Score=146.43 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred cCCceEE-eCCC--CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016358 182 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 182 ~~p~f~l-~~~g--~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
++|+|++ +.+| +.+++++++||+++|+||++||++|++++|.|+++.+++ +++||+|+.+.+.+.+++++.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence 5789998 7888 889999999999999999999999999999999987664 388999999888888888887
Q ss_pred cCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.......++..|....+++.|++.++|++++||++|+|+.+
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 66543333445567789999999999999999999999988
No 19
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=3.9e-19 Score=151.65 Aligned_cols=117 Identities=24% Similarity=0.449 Sum_probs=106.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
.|..+|+|++ +.+|+.+++++++||+++|+||++||++|+...+.|.+++++|++ .++++++|+.|.+.+++.++.
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHHHH
Confidence 5788999999 999999999999999999999999999999999999999999986 679999999999888888888
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.++ ..+|+..+.+..+.+.|++.++|+++++|++|+++..
T Consensus 114 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 114 NRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 8766 4566666777899999999999999999999999976
No 20
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.81 E-value=4.3e-19 Score=150.99 Aligned_cols=117 Identities=18% Similarity=0.394 Sum_probs=104.6
Q ss_pred hccCCceEE-eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016358 180 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
|..+|+|.+ +.+|+.++++++ +|+++||+||++||+.|..+++.|.+++++|++ .++++|+|++|. +.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence 457899999 999999999998 899999999999999999999999999999986 789999999986 46
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+++.+++...++ .+|+..|....+.+.|++..+|+++|||++|+|+++.
T Consensus 78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 788888876664 4777777788999999999999999999999999874
No 21
>PLN02412 probable glutathione peroxidase
Probab=99.81 E-value=1e-19 Score=153.68 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=91.3
Q ss_pred ccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHH
Q 016358 181 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE 252 (390)
Q Consensus 181 ~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~ 252 (390)
..+|+|++ +.+|+.+++++++||++||+||++||++|++++|.|++++++|++ .++.|++|++|. +.++
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence 56899999 999999999999999999999999999999999999999999986 789999999863 3345
Q ss_pred HHHhh-hcCCcccccCCc--hHH-HHHHHHcc-------------ccccceEEEECCCCcEEee
Q 016358 253 FDLNH-SIMPWLAIPYED--RAR-QDLCRIFN-------------IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~--~~~-~~l~~~~~-------------v~~~P~~~lid~~G~v~~~ 299 (390)
..+++ +.++ +.+|+.. +.+ ......|+ +...|++||||++|+|+.+
T Consensus 84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 55554 4433 5566643 122 13333332 5668999999999999998
No 22
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.80 E-value=2e-19 Score=145.05 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=93.4
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-----CCHHHHHHhhhcCCccccc
Q 016358 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~ 266 (390)
|+++++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|+.+ .+.+.+++++++++ +.+|
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 578999999999999999999999999999999999999986 78999999863 35677888887766 4678
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016358 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+..|....+.+.|++.++|+++|||++|+|+++.
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 8888888999999999999999999999999884
No 23
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.80 E-value=2.7e-19 Score=155.02 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=92.3
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCH
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~ 250 (390)
.+..+|+|++ +.+|+.+++++++||+|||+|||+||++|++++|.|++++++|++ .+++||+|+++ .+.
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCH
Confidence 4677899999 999999999999999999999999999999999999999999986 78999999974 345
Q ss_pred HHHHHhhhcCCcccccCCch------HHHH--------HHHHcccc----cc---ceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~------~~~~--------l~~~~~v~----~~---P~~~lid~~G~v~~~~ 300 (390)
+++.++++..+ +.+|+..+ .... +...|++. .+ |+++|||++|+|+.+.
T Consensus 92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 67888887655 34554321 1111 22234432 22 3799999999999874
No 24
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.80 E-value=2.2e-19 Score=149.64 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=91.4
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHH
Q 016358 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 254 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 254 (390)
.|+|++ +.+|+.+++++++||+|||+|||+||+ |+.++|.|++++++|++ .++.|++|++|. +.++..
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence 588999 999999999999999999999999999 99999999999999986 789999999753 346677
Q ss_pred Hhhhc-CCcccccCCchH--HHH-HHHHcc--ccccc-----------eEEEECCCCcEEeeC
Q 016358 255 LNHSI-MPWLAIPYEDRA--RQD-LCRIFN--IKGIP-----------ALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~--~~~-l~~~~~--v~~~P-----------~~~lid~~G~v~~~~ 300 (390)
++++. .+ +.+|+..+. +.. ..+.|+ +.++| +++|||++|+|+.+.
T Consensus 78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~ 139 (152)
T cd00340 78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF 139 (152)
T ss_pred HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence 78765 44 456765431 222 345555 45666 799999999999983
No 25
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.80 E-value=7.8e-19 Score=148.37 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=99.8
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+.+|+|++ +.+|+.+++++++||++||+||++| |++|..++|.|+++++++ .+++|++|+.|.. ....++
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~~-~~~~~f 93 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADLP-FAQKRF 93 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCCH-HHHHHH
Confidence 5899999999 8999999999999999999999999 999999999999999887 3689999999853 445667
Q ss_pred hhcCCcccccCCch-HHHHHHHHccccccc---------eEEEECCCCcEEeeC
Q 016358 257 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 300 (390)
.+..+...+++..| ....+++.||+...| +++|||++|+|++..
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 77666444677777 456999999998777 999999999999884
No 26
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.79 E-value=1.1e-18 Score=144.13 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=99.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++| |++|+.++|.|+++++++ .++.||+|++|. .....++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~ 75 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW 75 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence 4788999999 9999999999999999999999999 699999999999999987 358999999986 4455666
Q ss_pred hhcCCcccccCCchHH-HHHHHHccccc------cceEEEECCCCcEEeeC
Q 016358 257 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~v~~~~ 300 (390)
.+.++...++...|.. ..+++.||+.. .|+++|||++|+|++..
T Consensus 76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 6666655677777765 89999999863 79999999999999984
No 27
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.79 E-value=6.8e-19 Score=149.84 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred HHhhccCCceEE-eCCCC--eeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016358 177 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~--~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
..+|.++|+|++ +.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ .++++++|+.+.+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~ 106 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN 106 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence 457899999999 88886 5555665 78999999999999999999999887753 3588999998877777
Q ss_pred HHHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 253 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..++++.+++ .++ +..|....+.+.|++.++|++++||++|+|+++
T Consensus 107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 7778776653 344 345667789999999999999999999999988
No 28
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.78 E-value=2.5e-18 Score=148.26 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=101.4
Q ss_pred HhhccCCceEE-eCCCCeeeec--ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016358 178 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
-+|..+|+|++ +.+|+.++++ .++||+++|+||++||++|+.++|.+.++++++ ++.+++|+.| +.++..
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~ 119 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR 119 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence 35889999999 9999999995 579999999999999999999999999987653 3578888854 566777
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016358 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+++++++....++. ...++.+.|++..+|+.++||++|+|+++.. ....+.++++.++++.
T Consensus 120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADRE 180 (189)
T ss_pred HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHHc
Confidence 88876653222222 2468899999999999999999999997621 1244556666665543
No 29
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.78 E-value=1.7e-18 Score=137.15 Aligned_cols=109 Identities=23% Similarity=0.405 Sum_probs=92.7
Q ss_pred ceeecCCCc-cccCccC-CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~-gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ +++++++ ||+++|+||++||++|+.++|.++++++++.+. +.++.++ |.+.+...+++++++...
T Consensus 3 f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 3 FDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred ceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCCCC
Confidence 458889999 9999997 999999999999999999999999999887543 7788775 667788999999887655
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+|...+ ..+.+.|+++.+|+++++|++|+++++++
T Consensus 79 ~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 79 FPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CcEEec--HHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 665432 45889999999999999999999988764
No 30
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.5e-19 Score=167.29 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=72.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...++-+++. +...-.....++|.||||||+||++.+|.+.+++..++..+ -.|..+.+|++++
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~--s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEG--SPVKLAKVDATEE------------- 88 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC--CCceeEEeecchh-------------
Confidence 4445555565 66666667899999999999999999999999999999875 3377778888776
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..+|.+|+|+++||+.++. +|+.
T Consensus 89 --------~~~~~~y~v~gyPTlkiFr-nG~~ 111 (493)
T KOG0190|consen 89 --------SDLASKYEVRGYPTLKIFR-NGRS 111 (493)
T ss_pred --------hhhHhhhcCCCCCeEEEEe-cCCc
Confidence 8999999999999999995 7774
No 31
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.77 E-value=3.5e-18 Score=145.53 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=98.8
Q ss_pred hhccCCceEE-eCCC----CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016358 179 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g----~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
+|+.+|+|.+ +.+| +.+++++++||++||+|| ++||++|..+++.|++++++|.+ .++.|++|++|...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence 4788999999 7776 799999999999999999 89999999999999999999986 78999999998643
Q ss_pred HHHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..+.+.... ..-+.+++..|....+++.||+. .+|+++|||++|+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 223333221 12245777778889999999986 678999999999999984
No 32
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.77 E-value=2.6e-18 Score=147.86 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=98.8
Q ss_pred HhhccCCceEE-e-CCCC--eeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016358 178 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l-~-~~g~--~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|..+|+|++ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|++ .+++|++|+.|...
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 46899999999 6 5676 68888999999999999 99999999999999999999986 78999999999742
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
++|.+......-+.+|+..|....+++.||+. ..|++||||++|+|++..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 33333332222355677778888999999986 469999999999999884
No 33
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.77 E-value=1.6e-18 Score=144.84 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=100.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++ ||+.|..+++.|.++++++++ .++++|+|+.|. .++..++
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d~-~~~~~~~ 81 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTDK-PEKLSRF 81 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHH
Confidence 4788999999 999999999999999999999987 677799999999999999986 789999999984 5777777
Q ss_pred hhcCCcccccCCchHHHHHHHHcccccc------------ceEEEECCCCcEEee
Q 016358 257 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~ 299 (390)
.+.++ ..+|+..|....+.+.||+... |+++|||++|+|+..
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 77665 4567777777889999998654 778999999999988
No 34
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.77 E-value=2.9e-18 Score=141.02 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=100.8
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016358 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.+ .+++||+|+.|. .+.+.++...
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence 5789999 9999999999999999999999 58999999999999999999986 789999999985 4677777776
Q ss_pred CCcccccCCchHHHHHHHHcccccc---------ceEEEECCCCcEEee
Q 016358 260 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTIST 299 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 299 (390)
++ ..+|+..|....+.+.||+... |+++|||++|+|++.
T Consensus 78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 66 4677777878899999999988 999999999999998
No 35
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.76 E-value=7.9e-18 Score=144.43 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=89.2
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016358 180 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+...|+|++ +.+|+.+++++++||+| |+.|||+||++|+.++|.|++++++|++ .++.|++|++|. +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence 456799999 99999999999999965 4566999999999999999999999986 789999999752 33
Q ss_pred HHHHHhhh-cCCcccccCCch--HH----HHHH----H--------Hccccccce---EEEECCCCcEEeeC
Q 016358 251 KEFDLNHS-IMPWLAIPYEDR--AR----QDLC----R--------IFNIKGIPA---LVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~~~~--~~----~~l~----~--------~~~v~~~P~---~~lid~~G~v~~~~ 300 (390)
++..+++. .++ +.+|+..+ .+ ..+. . .+++.++|+ +||||++|+|+.+.
T Consensus 94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 56667765 333 45665432 11 1222 1 235778995 69999999999983
No 36
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.76 E-value=6.9e-18 Score=140.27 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=99.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCC-cEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|..+|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++ .++++++|+.|. .+..++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence 4788999999 89999999999999 99988887 99999999999999999999986 789999999885 455666
Q ss_pred hhhcCCcccccCCchHH--HHHHHHccccc----c--ceEEEECCCCcEEeeC
Q 016358 256 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG----I--PALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~--~~l~~~~~v~~----~--P~~~lid~~G~v~~~~ 300 (390)
+.+.++ +.+|+..|.. ..+++.||+.. + |+++|||++|+|+++.
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 666655 4677777755 88999999873 3 4899999999999983
No 37
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.76 E-value=3.1e-18 Score=138.09 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=91.7
Q ss_pred Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----CChhHHHHHHHhCCCcceec
Q 016358 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 33 g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 106 (390)
|+ +++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|+.+ .+.+.+++|++++. +.+|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 45 99999999999999999999999999999999999999766 899999863 35667889999877 45677
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016358 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
..+....+.+.|++.++|++++||++|++++...
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 6667789999999999999999999999987543
No 38
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.75 E-value=1e-17 Score=139.72 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=86.6
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHHHHHHh
Q 016358 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN 256 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~ 256 (390)
+|++ +.+|+++++++++||++||+|||+||++|+.++|.|++++++|++ .++.|++|+++ .+.+...++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence 5778 899999999999999999999999999999999999999999986 78999999952 234667777
Q ss_pred hhc-CCcccccCCch-----HHHHHHHHccc---cccce----EEEECCCCcEEee
Q 016358 257 HSI-MPWLAIPYEDR-----ARQDLCRIFNI---KGIPA----LVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~-~~~~~~~~~~~-----~~~~l~~~~~v---~~~P~----~~lid~~G~v~~~ 299 (390)
++. ++ +.+|...+ ........|.+ .++|+ +||||++|+|+.+
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 754 44 45665432 11122223332 35898 9999999999998
No 39
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.74 E-value=2.3e-17 Score=140.87 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=98.8
Q ss_pred HhhccCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016358 178 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|.++|+|+. +.+...+++++++||++||+|| ++||+.|..+++.|.+++++|.+ .+++|++||.|...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence 46899999997 3445577888999999999999 99999999999999999999986 78999999998642
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccc----ccc--ceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~v~~~~ 300 (390)
.+|.+......-+.+|+..|.+..+++.||+ .++ |+++|||++|+|++..
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 3344333222235678888889999999998 355 9999999999999884
No 40
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.6e-17 Score=132.93 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=102.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.++|++++||+|||+|| ..++|.|..++-.+++.+.+|.+ .+.+|++||.|. ....++|
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds-~~~~~~F 81 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDS-PKSHKKF 81 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCC-HHHHHHH
Confidence 5899999999 9999999999999999999999 57888899999999999999987 799999999995 4455566
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016358 257 HSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
...++ ++++.+.|.+..++++||+. ..+++||||++|+|++.
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 66555 56899999999999999983 35889999999999988
No 41
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.74 E-value=1.8e-17 Score=130.82 Aligned_cols=110 Identities=28% Similarity=0.518 Sum_probs=99.2
Q ss_pred eEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHHhhhcCCcc
Q 016358 186 YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPWL 263 (390)
Q Consensus 186 f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~ 263 (390)
|.+ +.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+ .++.++.|++|.. .+.+.++...++ .
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 556 789999999999999999999999999999999999999999875 7799999999987 889999988777 5
Q ss_pred cccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 264 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 264 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 666666667889999999999999999999999976
No 42
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.73 E-value=1.7e-17 Score=137.48 Aligned_cols=109 Identities=28% Similarity=0.489 Sum_probs=96.6
Q ss_pred ecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016358 29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~~~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
.+.+|+ +++++++||+++|+||++ |||+|+..+|.+.++++++++.+ +++++|+.+.+.. ..+++++.+ ..+|+
T Consensus 14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~~-~~~~~ 89 (146)
T PF08534_consen 14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKYG-INFPV 89 (146)
T ss_dssp EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHTT-TTSEE
T ss_pred ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhhC-CCceE
Confidence 459999 999999999999999999 99999999999999999998887 8999999998777 888888855 55666
Q ss_pred ChhHHHHHHHhcCcC---------CCCeEEEEcCCCcccccccc
Q 016358 107 DETLHKKLRIRYRVD---------RIPSLIPLASDGTLIEEDLI 141 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~---------~~P~~~~~d~~G~i~~~~~~ 141 (390)
..+....+.+.|++. ++|+++++|++|+|++....
T Consensus 90 ~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 90 LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred EechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 666678999999988 99999999999999976643
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.73 E-value=2.8e-17 Score=131.99 Aligned_cols=106 Identities=20% Similarity=0.378 Sum_probs=92.1
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHHhhhcCC
Q 016358 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP 261 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~ 261 (390)
|+|.+ +.+|+.+++.+++||+++|+||++||++|+.++|.|.++++++ .+++|+.|.+ .+++.++.+.++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence 67888 8999999999999999999999999999999999999998764 4888888764 677788877766
Q ss_pred cccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+|...+.+..+++.|+|.++|+++|+|++| ++++
T Consensus 73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 46777667778899999999999999999999 8776
No 44
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.72 E-value=5.4e-17 Score=141.16 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=98.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEE-EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHHH
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 254 (390)
+|..+|+|++ +..| .+++++++||+++| +||++||+.|..+++.|++++++|++ .+++|++|++|... .+|.
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHH
Confidence 5889999999 6666 79999999997766 68999999999999999999999986 78999999999743 3444
Q ss_pred Hh-hhcCC-cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016358 255 LN-HSIMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~-~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
+. ....+ ...+|+..|.+..+++.||+. .+|+++|||++|+|++..
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 33 23333 256888888889999999984 589999999999999873
No 45
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.72 E-value=5.8e-17 Score=133.21 Aligned_cols=114 Identities=21% Similarity=0.306 Sum_probs=99.1
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016358 183 GRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
+|+|++ +.+|+.+++++++||+++|+|| ++||+.|...+|.|++++++++. .++.+++|+.|. .....++.+.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HHHHHHHHhcc
Confidence 689999 9999999999999999999999 78999999999999999999975 789999999874 45666777766
Q ss_pred CcccccCCchHHHHHHHHccccccc---------eEEEECCCCcEEeeC
Q 016358 261 PWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 300 (390)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 300 (390)
+-..+++..|....+.+.||+...| +++|||++|+|+++.
T Consensus 78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 3456777777778999999988665 899999999999984
No 46
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.71 E-value=3.7e-17 Score=132.03 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=91.5
Q ss_pred ceeecCCC--c-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 26 EFLLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 26 ~~l~~~~g--~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
+.+.+.+| + +++++++||+++|+||++||++|+.++|.|+++.+++ + +++++|+.+.+.+.+++|+++....
T Consensus 6 f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 6 FSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHGNP 80 (127)
T ss_pred cccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcCCC
Confidence 44777888 7 9999999999999999999999999999999988764 2 8899999988888999999876643
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
..+...+....+++.|++.++|+.+++|++|+++.+.
T Consensus 81 ~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred CceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 2233344567899999999999999999999988543
No 47
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.71 E-value=6.6e-17 Score=141.37 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=102.4
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHHH
Q 016358 178 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF 253 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~ 253 (390)
++|+.+|+|++ +.+|+...+++++||++ |++||++|||.|..+++.|++++++|++ .+++|++||+|.. ...|
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence 57999999999 88999888899999975 6799999999999999999999999987 7899999999974 4567
Q ss_pred HHhhhcC--CcccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEee
Q 016358 254 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 299 (390)
.++++.. .-+.+|+..|.+..+++.||+. .+|++||||++|+|+..
T Consensus 80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 7766542 1356888888888999999983 68999999999999987
No 48
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.71 E-value=9.4e-17 Score=132.30 Aligned_cols=117 Identities=26% Similarity=0.533 Sum_probs=94.8
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHHHHhh
Q 016358 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFDLNH 257 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~ 257 (390)
+|+|++ +.+|+.+++.+++||++||+||++||++ |..+++.|+++++++++....++++++|+.|.. .+.++++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 689999 9999999999999999999999999998 999999999999999851113599999999863 46677777
Q ss_pred hcCC--cccccCCchHHHHHHHHcccccc--------------ceEEEECCCCcEEee
Q 016358 258 SIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~--~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~ 299 (390)
+.++ |..+....+....+++.||+... |.++|||++|+|+..
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 7654 44333333345789999997654 469999999999986
No 49
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.70 E-value=3.2e-17 Score=138.17 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=78.8
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEE------EEEecCCCHHHHHHhhh----cCC
Q 016358 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV------VLVSTDRDHKEFDLNHS----IMP 261 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~----~~~ 261 (390)
.+.++.++++||++||+|||+||++|+.+.|.|.++.+ .++.+ ++|+.|.+......+++ +..
T Consensus 49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~ 121 (184)
T TIGR01626 49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK 121 (184)
T ss_pred ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence 45677888999999999999999999999999999933 34667 99999876544334433 222
Q ss_pred cccc---cCCchHHHHHHHHccccccceE-EEECCCCcEEee
Q 016358 262 WLAI---PYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTIST 299 (390)
Q Consensus 262 ~~~~---~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~ 299 (390)
..+ ++..|....+...|++.++|++ ||||++|+|+++
T Consensus 122 -~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 122 -KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred -ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 233 3666667788999999999988 899999999998
No 50
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=7.3e-17 Score=171.23 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=100.5
Q ss_pred hhccCCceEE-e--CCCCeeee-cccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec---CC--C
Q 016358 179 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D 249 (390)
Q Consensus 179 ~g~~~p~f~l-~--~~g~~~~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~---d~--~ 249 (390)
.|..+|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|++ .++.||+|++ |. +
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence 4788899987 3 68999998 689999999999999999999999999999999975 6799999974 33 4
Q ss_pred HHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 250 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++++++...+ +.+|...|....+.+.|+|.++|+++|||++|+|+.+
T Consensus 470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence 567777877666 4566666777889999999999999999999999987
No 51
>PRK15000 peroxidase; Provisional
Probab=99.70 E-value=1.7e-16 Score=137.57 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=96.8
Q ss_pred HhhccCCceEE-eC--CCCe---eeeccc-CCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 016358 178 LLAIEGRDYVL-SR--DHRK---ITVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 249 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g~~---~~l~~~-~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~ 249 (390)
++|..+|+|++ +. +|+. ++++++ +||++||+||+. ||+.|..+++.|++++++|++ .+++|++|++|..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~ 79 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE 79 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence 46899999998 43 3454 345554 799999999995 999999999999999999987 7899999999964
Q ss_pred H--HHHHHhh-hcCC--cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016358 250 H--KEFDLNH-SIMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 ~--~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
. ..|.+.. +..+ -+.+|+..|....+++.||+. ++|.++|||++|+|++..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 3 4444432 2222 257888888889999999997 799999999999999873
No 52
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.69 E-value=1.4e-16 Score=132.39 Aligned_cols=113 Identities=22% Similarity=0.427 Sum_probs=94.1
Q ss_pred CCceEE-eCCCCeeeecccC-Cc-EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016358 183 GRDYVL-SRDHRKITVSELA-GK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
+|+|++ +.+|+.++++++. ++ ++|++||++||++|+.++|.|+++++++.+ .++.||+|+.|... ....+.+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~~ 77 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDKG 77 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHHh
Confidence 689999 8999999999885 35 555555799999999999999999999986 78999999988654 33345554
Q ss_pred CCcccccCCchHHHHHHHHcccc-----------------------------ccceEEEECCCCcEEeeC
Q 016358 260 MPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~~ 300 (390)
.. +.+|+..|.+..+.+.||+. .+|+++|||++|+|++.+
T Consensus 78 ~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 78 KF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred cC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 43 57888888889999999984 799999999999999874
No 53
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.68 E-value=1.2e-16 Score=128.37 Aligned_cols=109 Identities=28% Similarity=0.504 Sum_probs=96.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
...+.+.+|+ ++|++++||+++|.||++ ||++|+..++.|+++++++++.+ +++++|+.|.. +..+++.+..+ .
T Consensus 7 ~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~~~~~-~ 82 (124)
T PF00578_consen 7 DFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFLEEYG-L 82 (124)
T ss_dssp CEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHHHHHT-C
T ss_pred CcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhhhhhc-c
Confidence 3458899999 999999999999999999 99999999999999999999877 99999999744 46788888766 5
Q ss_pred ceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccc
Q 016358 103 AVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~ 137 (390)
.+|+..+....+++.|++. .+|+++++|++|+|++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 6666666778999999998 9999999999999876
No 54
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=153.65 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=96.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----CChhHHHHHHHh
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~ 98 (390)
.+++.+.+|+ +.++ +||+|||+|||+||++|+.++|.|++++++++..+ ++||.|+++ .+...++++++.
T Consensus 40 ~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 40 TLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHh
Confidence 4568999999 8887 89999999999999999999999999999998655 889999873 234568888888
Q ss_pred CCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 99 MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.+..+|++.+....+++.|++.++|++++||++|+++.+.
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~ 156 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV 156 (521)
T ss_pred CCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE
Confidence 88777888777788999999999999999999999998554
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=5e-16 Score=127.26 Aligned_cols=105 Identities=16% Similarity=0.311 Sum_probs=79.1
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+||++||+|||+||++|+.+.|.|.+++++|. ..+.++.|++|.+. ...+++.|
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~ 72 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY 72 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence 367999999999999999999999999999986 45789999888642 24678899
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCCCccccCCC
Q 016358 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH 343 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~h 343 (390)
+|.++|++++||++|+++.+ ..|... .++|.+.+++...+.|..-....|
T Consensus 73 ~V~~iPt~v~~~~~G~~v~~-------~~G~~~-------~~~l~~~l~~l~~~~~~~~~~~~~ 122 (142)
T cd02950 73 RVDGIPHFVFLDREGNEEGQ-------SIGLQP-------KQVLAQNLDALVAGEPLPYANAVG 122 (142)
T ss_pred CCCCCCEEEEECCCCCEEEE-------EeCCCC-------HHHHHHHHHHHHcCCCCCcccccC
Confidence 99999999999999999987 345443 344555555544444433333333
No 56
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.68 E-value=4e-16 Score=139.06 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=99.2
Q ss_pred HHhhccCCceEE-e-CCC--Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-
Q 016358 177 QLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 249 (390)
Q Consensus 177 ~l~g~~~p~f~l-~-~~g--~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~- 249 (390)
.++|+.+|+|++ + .+| +.++++++ +||++||+|| ++||++|..+++.|++++++|++ .+++|++|++|..
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSPF 144 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHH
Confidence 468999999998 4 345 46899998 8888888877 89999999999999999999987 7899999999973
Q ss_pred -HHHHHHh-hhcC--CcccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016358 250 -HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 -~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
..+|.+. .+.. .-+.+|+..|.+..+++.||+. ..|+++|||++|+|++..
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 2445443 2221 2356888888889999999985 589999999999999874
No 57
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.67 E-value=1.5e-16 Score=133.19 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=79.2
Q ss_pred ccCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016358 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 181 ~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
.+.++|.+ .+|+.+++++++ +|+||++||++|++++|.|++++++|+ ++|++|++|...+
T Consensus 53 ~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~--------- 112 (181)
T PRK13728 53 PAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD--------- 112 (181)
T ss_pred CCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC---------
Confidence 35677775 599999999997 777999999999999999999999973 7899999986531
Q ss_pred CcccccCCch-HHHHHHHHccc--cccceEEEECCCCcEEe
Q 016358 261 PWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS 298 (390)
Q Consensus 261 ~~~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~v~~ 298 (390)
..+|...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 --~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 --TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred --CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 46676553 45667888995 69999999999999975
No 58
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.67 E-value=5.2e-16 Score=135.84 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=97.8
Q ss_pred HhhccCCceEE-eCCCCeeee-cccCCcEEEE-EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH--H
Q 016358 178 LLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK--E 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l-~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~--~ 252 (390)
.+|..+|+|++ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|++ .+++|++||+|.... +
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~a 83 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHIE 83 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHHH
Confidence 46999999999 77786 555 5579997665 88999999999999999999999987 789999999997543 5
Q ss_pred HHHhhhcC-C-cccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEeeC
Q 016358 253 FDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 300 (390)
|.++.... + -..+|...|.+..+++.||+. ..|+++|||++|+|++..
T Consensus 84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 66655431 1 356788888889999999973 479999999999999873
No 59
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.67 E-value=8.9e-17 Score=133.90 Aligned_cols=112 Identities=19% Similarity=0.290 Sum_probs=87.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||+|+|+||++||+ |+.++|.|+++++++++++ +++++|++|. +.+..++|+
T Consensus 4 ~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 4 DFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred eeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHHHH
Confidence 3568899999 999999999999999999999 9999999999999998777 9999999863 345788999
Q ss_pred Hh-CCCcceecChh--HHHH-HHHhcC--cCCCC-----------eEEEEcCCCccccccc
Q 016358 97 KC-MPWLAVPFDET--LHKK-LRIRYR--VDRIP-----------SLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 ~~-~~~~~~~~~~~--~~~~-l~~~~~--v~~~P-----------~~~~~d~~G~i~~~~~ 140 (390)
++ ++ +.+|+..+ .... ....|+ +..+| +.+++|++|+++++..
T Consensus 81 ~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 81 ETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred HHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 86 55 45555321 1222 334444 34555 8999999999997654
No 60
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.67 E-value=6.7e-16 Score=134.58 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=95.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCC-cEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHH
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 253 (390)
+|..+|+|++ +.+| .+++++++| |++ |++||++||+.|..+++.|++++++|++ .+++|++|++|... .+|
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence 4788999999 6666 589999998 654 5689999999999999999999999987 78999999999743 334
Q ss_pred HHhhhcC--CcccccCCchHHHHHHHHcccc--------ccceEEEECCCCcEEeeC
Q 016358 254 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 254 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~~ 300 (390)
.+.+... .-+.+|+..|.+..+++.||+. ..|++||||++|+|++..
T Consensus 77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 4433321 2356788888889999999975 245799999999999873
No 61
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.67 E-value=3.5e-16 Score=133.40 Aligned_cols=111 Identities=24% Similarity=0.496 Sum_probs=98.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
..++.+.+|+ +++++++||+++|+||++||++|+...+.|.++++++++.+ +++++|+.|.+.+.++++.++++ +.
T Consensus 43 ~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~-~~ 119 (173)
T PRK03147 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYG-LT 119 (173)
T ss_pred CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhC-CC
Confidence 4568899999 99999999999999999999999999999999999998765 89999999999889999999876 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++..+....+.+.|++.++|+++++|++|+++..
T Consensus 120 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 120 FPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred ceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 56655566899999999999999999999998743
No 62
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.67 E-value=2.5e-16 Score=135.42 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=87.5
Q ss_pred cceeecCCC--c-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016358 25 VEFLLSRQG--K-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g--~-~~l~~~-~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.+.+.+| + ++++.+ +||+++|+||++||++|++++|.|.++++ .+ ++|++|+.|.+.+..++|++++.
T Consensus 47 ~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~~~~~~~~ 120 (185)
T PRK15412 47 KFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELG 120 (185)
T ss_pred CcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHHHHHHHcC
Confidence 344777774 6 777665 79999999999999999999999988764 24 88999999888888889999776
Q ss_pred Cccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016358 101 WLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
. .+| ...+....+...|++.++|+.+++|++|+++++..
T Consensus 121 ~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 121 N-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 160 (185)
T ss_pred C-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEe
Confidence 3 233 23344567889999999999999999999987654
No 63
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.66 E-value=1e-15 Score=133.18 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=98.3
Q ss_pred HhhccCCceEE-----eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH
Q 016358 178 LLAIEGRDYVL-----SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251 (390)
Q Consensus 178 l~g~~~p~f~l-----~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 251 (390)
.+|.++|+|++ +.+|+++++++++||+++|+||+ .||+.|..+++.|.+++++|++ .+++||+|++|....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA 83 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence 36899999995 34668999999999999999995 8899999999999999999987 789999999997543
Q ss_pred --HHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016358 252 --EFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 252 --~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
.|...... ..-+.+|+..|....+++.||+. .+|+.+|||++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 22211111 22367889899899999999985 47999999999999986
No 64
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.66 E-value=3.4e-16 Score=135.66 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=87.7
Q ss_pred cCcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHH
Q 016358 23 EGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEE 94 (390)
Q Consensus 23 ~~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~ 94 (390)
...+++.+.+|+ +++++++||+|||+|||+||++|+.++|.|++++++++++| ++|++|++| .+.+.+++
T Consensus 19 ~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~ 96 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRK 96 (199)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHH
Confidence 345668999999 99999999999999999999999999999999999999887 999999985 34567899
Q ss_pred HHHhCCCcceecChh------HHH--------HHHHhcCcC----CC---CeEEEEcCCCcccccc
Q 016358 95 HFKCMPWLAVPFDET------LHK--------KLRIRYRVD----RI---PSLIPLASDGTLIEED 139 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~------~~~--------~l~~~~~v~----~~---P~~~~~d~~G~i~~~~ 139 (390)
|+++++ +.+|+..+ ... .+...|++. .+ |+.+|+|++|+++.+.
T Consensus 97 f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 97 FNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 998776 34454211 111 122334432 22 4799999999998654
No 65
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.66 E-value=5.3e-16 Score=122.35 Aligned_cols=110 Identities=27% Similarity=0.461 Sum_probs=96.2
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 103 (390)
..+.+.+|+ ++++++.||+++|+||++||++|+...+.|.++.+++++.+ +.++.|++|.+ .+.+++++++++ ..
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-IT 78 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CC
Confidence 347788999 99999999999999999999999999999999999997544 89999999987 888999999887 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++..+....+.+.|++.++|+++++|++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 55544556789999999999999999999988754
No 66
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.8e-15 Score=143.70 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=121.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+++.|.+.++...+++. +....+|++.. ..+|++|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~~---------------------~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDEH---------------------KDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchhh---------------------HHHHHhcCC
Confidence 4789999999999999999999999999999874 66667776664 899999999
Q ss_pred CCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeeeecc-
Q 016358 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE- 199 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~l~~- 199 (390)
.++||+.++.+...++.... ................. .+....+.-+....-..+..-.
T Consensus 100 ~gfPtl~~f~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~ 159 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPIDYSG-----------PRNAESLAEFLIKELEP---------SVKKLVEGEVFELTKDNFDETVK 159 (383)
T ss_pred ccCcEEEEEcCCCceeeccC-----------cccHHHHHHHHHHhhcc---------ccccccCCceEEccccchhhhhh
Confidence 99999999975522221111 00111111111111000 0000011100011111111100
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.....++|.|+++||++|+.+.|.+.++...++. ...+.+..+..+. ...++..+
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~--~~~v~~~~~d~~~-----------------------~~~~~~~~ 214 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS--KENVELGKIDATV-----------------------HKSLASRL 214 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc--CcceEEEeeccch-----------------------HHHHhhhh
Confidence 1236799999999999999999999999998862 3566666665541 47888999
Q ss_pred cccccceEEEECCCCc
Q 016358 280 NIKGIPALVLIGPDGK 295 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~ 295 (390)
+|.++|++.++-++..
T Consensus 215 ~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 215 EVRGYPTLKLFPPGEE 230 (383)
T ss_pred cccCCceEEEecCCCc
Confidence 9999999999955555
No 67
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.65 E-value=6.6e-16 Score=131.37 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=98.5
Q ss_pred cceeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~-~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
...+.+.+|+ ++++++ +||++||+||++||+.|...++.|.++++++++.+ +++++|++|. +.+.++++
T Consensus 6 ~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~ 83 (171)
T cd02969 6 DFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAK 83 (171)
T ss_pred CccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHH
Confidence 3558899999 999998 89999999999999999999999999999998765 9999999985 46788999
Q ss_pred HHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016358 96 FKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+++++. .+|+..+....+++.|++..+|+++++|++|++++...
T Consensus 84 ~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 84 AKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 998774 36676666789999999999999999999999986543
No 68
>PLN02412 probable glutathione peroxidase
Probab=99.64 E-value=4.2e-16 Score=131.59 Aligned_cols=114 Identities=14% Similarity=0.241 Sum_probs=86.4
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016358 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
..++|.+.+|+ +++++++||++||+||++||++|+.++|.|++++++|++.| ++|++|++|. +.+...++
T Consensus 10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~~~~ 87 (167)
T PLN02412 10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEIQQT 87 (167)
T ss_pred CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHHHHH
Confidence 34668999999 99999999999999999999999999999999999999887 9999999863 33355555
Q ss_pred -HHhCCCcceecCh--hHH-HHHHHhcC-------------cCCCCeEEEEcCCCccccccc
Q 016358 96 -FKCMPWLAVPFDE--TLH-KKLRIRYR-------------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 96 -~~~~~~~~~~~~~--~~~-~~l~~~~~-------------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
.++++ +.+|... +.+ ...+..|+ +.+.|+.+|+|++|+++.+..
T Consensus 88 ~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 88 VCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 45544 4455521 111 12222222 566899999999999987653
No 69
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.63 E-value=8.6e-16 Score=135.18 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=87.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
.+.|.+.+|+ +++++++||++||+||++||++|..++|.|++++++++++| ++|++|++| .+.++.++|+
T Consensus 81 dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~ 158 (236)
T PLN02399 81 DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFA 158 (236)
T ss_pred ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHH
Confidence 4558899999 99999999999999999999999999999999999999887 999999985 2445778887
Q ss_pred -HhCCCcceecC--hhHHH-HHHHhc-------C------cCCCCeEEEEcCCCccccccc
Q 016358 97 -KCMPWLAVPFD--ETLHK-KLRIRY-------R------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 -~~~~~~~~~~~--~~~~~-~l~~~~-------~------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
++++ +.+|+. .+... ..+..| + +.+.|+.+|||++|+++.+..
T Consensus 159 ~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 159 CTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred HHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 3444 344542 12111 222222 2 356799999999999997553
No 70
>PRK13189 peroxiredoxin; Provisional
Probab=99.63 E-value=3.8e-15 Score=131.20 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=96.1
Q ss_pred HhhccCCceEE-eCCCCeeeecc-cCCcEEE-EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HH
Q 016358 178 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~-~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 252 (390)
.+|..+|+|++ +..|+ +++++ ++||+++ ++||++||+.|..+++.|++++++|++ .+++|++||+|... .+
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a 85 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK 85 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence 46999999999 67774 77776 4998554 578999999999999999999999987 78999999999754 34
Q ss_pred HHHhhhc-CC-cccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEeeC
Q 016358 253 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 300 (390)
|.+.+.. .+ -+.+|+..|....+++.||+. .+|++||||++|+|++..
T Consensus 86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 5544332 22 256788888889999999975 579999999999998773
No 71
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.62 E-value=1.5e-15 Score=124.83 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=96.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ +++++++||+++|+|| +.||+.|..+++.|.++++++++.+ +++++|+.|. .+.+.+|.++++ .
T Consensus 5 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~~-~ 80 (140)
T cd03017 5 DFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKYG-L 80 (140)
T ss_pred CccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhC-C
Confidence 3568899999 9999999999999999 5899999999999999999998766 8999999984 567889998876 4
Q ss_pred ceecChhHHHHHHHhcCcCCC---------CeEEEEcCCCcccccc
Q 016358 103 AVPFDETLHKKLRIRYRVDRI---------PSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~---------P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.||+... |+.+++|++|++++..
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 566766666889999999988 9999999999998654
No 72
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.62 E-value=3.8e-15 Score=128.40 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred cceeecCCCc-cccC--ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016358 25 VEFLLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~--~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+++.+.+|+ ++++ ..+||+++|+||++||++|+.++|.+.+++++. + +++++|+. .+.++.++|+++++.
T Consensus 54 ~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 54 IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHRRFLKDHEL 127 (189)
T ss_pred CcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHHHHHHhcCC
Confidence 4558999999 9995 568999999999999999999999999988653 2 56899984 466788999998764
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016358 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
...++. ...++.+.|++..+|+.+++|++|+++++
T Consensus 128 ~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 128 GGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred Ccceee--chhHHHHhccCCccceEEEECCCCeEEEc
Confidence 322222 23678899999999999999999999864
No 73
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.61 E-value=3.2e-15 Score=126.33 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=94.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+||++| |++|..++|.|+++++++. + ++|++|+.|. ....++|.++++..
T Consensus 26 ~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~-~~~~~~f~~~~~~~ 100 (167)
T PRK00522 26 DFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADL-PFAQKRFCGAEGLE 100 (167)
T ss_pred CeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCC-HHHHHHHHHhCCCC
Confidence 3458899999 9999999999999999999 9999999999999999983 3 8899999984 45578899888754
Q ss_pred ceecChh-HHHHHHHhcCcCCCC---------eEEEEcCCCccccccc
Q 016358 103 AVPFDET-LHKKLRIRYRVDRIP---------SLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~-~~~~l~~~~~v~~~P---------~~~~~d~~G~i~~~~~ 140 (390)
.+++..| ....+++.||+...| +.+++|++|++++...
T Consensus 101 ~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 101 NVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 4666555 456999999998777 9999999999987665
No 74
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=3.3e-14 Score=140.91 Aligned_cols=240 Identities=11% Similarity=0.172 Sum_probs=142.7
Q ss_pred cchhhhhhccCcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHH
Q 016358 14 SDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF 92 (390)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 92 (390)
.++..++.....+.+...+.. ...--..++.+++.|. .+.......+.+.+++++++++ +.++.+|.+..
T Consensus 220 ~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~-----~~f~~vd~~~~-- 290 (477)
T PTZ00102 220 EELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG--TTEDYDKYKSVVRKVARKLREK-----YAFVWLDTEQF-- 290 (477)
T ss_pred HHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec--CHHHHHHHHHHHHHHHHhccCc-----eEEEEEechhc--
Confidence 346667777777777777776 3222224555444332 4555667888999999999875 44555554432
Q ss_pred HHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHH-HHhhcchhhhc
Q 016358 93 EEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRRE-ELKAIDDSKRQ 171 (390)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 171 (390)
...+.+.||+..+|++++.+.+|+....... . .. .....+. .+......
T Consensus 291 ------------------~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~-----~---~~-~~~~~l~~Fv~~~~~g--- 340 (477)
T PTZ00102 291 ------------------GSHAKEHLLIEEFPGLAYQSPAGRYLLPPAK-----E---SF-DSVEALIEFFKDVEAG--- 340 (477)
T ss_pred ------------------chhHHHhcCcccCceEEEEcCCcccCCCccc-----c---cc-CCHHHHHHHHHHHhCC---
Confidence 0136788999999998888755543211100 0 00 1111221 11111110
Q ss_pred ccchhHHhhccCCc---eEE-eCCCCeeeec-ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016358 172 GGKLEQLLAIEGRD---YVL-SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 172 ~~~~~~l~g~~~p~---f~l-~~~g~~~~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.....+...+.|. ..+ ...|+++... .-.|++|+|+|||+||++|+.+.|.+.++++.+++ ...+.++.+..
T Consensus 341 -k~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~ 417 (477)
T PTZ00102 341 -KVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNG 417 (477)
T ss_pred -CCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEEC
Confidence 0001111111121 112 4555555543 23579999999999999999999999999998874 23466666655
Q ss_pred CCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHH
Q 016358 247 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 326 (390)
Q Consensus 247 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~ 326 (390)
+. +...++.|+++++|++++++++|++..+ +.|... .+.+.+.
T Consensus 418 ~~-----------------------~~~~~~~~~v~~~Pt~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~ 460 (477)
T PTZ00102 418 TA-----------------------NETPLEEFSWSAFPTILFVKAGERTPIP-------YEGERT-------VEGFKEF 460 (477)
T ss_pred CC-----------------------CccchhcCCCcccCeEEEEECCCcceeE-------ecCcCC-------HHHHHHH
Confidence 53 2456778999999999999877765333 345444 5667676
Q ss_pred HHHhcC
Q 016358 327 LKKEGD 332 (390)
Q Consensus 327 ~~~~~~ 332 (390)
+++...
T Consensus 461 i~~~~~ 466 (477)
T PTZ00102 461 VNKHAT 466 (477)
T ss_pred HHHcCC
Confidence 766554
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.61 E-value=2.4e-15 Score=128.04 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=87.0
Q ss_pred cceeecCCCc-ccc--Ccc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016358 25 VEFLLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l--~~~-~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+++.+.+|+ .++ +++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+.+.+.++..+|+++++
T Consensus 42 ~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~~~~~~~~ 115 (173)
T TIGR00385 42 AFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNALKFLKELG 115 (173)
T ss_pred CccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHHHHHHHcC
Confidence 4457888886 444 465 69999999999999999999999988765 23 88999999877777888998876
Q ss_pred Cccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 101 WLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+ .++ +..+....+.+.|++.++|+.+++|++|+++++.
T Consensus 116 ~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 116 N-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred C-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 4 333 3345557899999999999999999999988654
No 76
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.61 E-value=1.7e-15 Score=126.32 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=86.2
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHHH
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~ 97 (390)
++|.+.+|+ +++++++||++||.||++||++|+..+|.|+++++++++++ ++|++|+++ .+.+..++|++
T Consensus 5 f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 5 FEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred ceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHH
Confidence 568899999 99999999999999999999999999999999999999877 999999962 34567888987
Q ss_pred h-CCCcceecChh-----HHHHHHHhcC---cCCCCe----EEEEcCCCccccccc
Q 016358 98 C-MPWLAVPFDET-----LHKKLRIRYR---VDRIPS----LIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~-~~~~~~~~~~~-----~~~~l~~~~~---v~~~P~----~~~~d~~G~i~~~~~ 140 (390)
+ ++ +.+|...+ ........|. ...+|+ .+++|++|+++.+..
T Consensus 83 ~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 83 RNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 5 45 34555221 1111122232 235898 999999999986543
No 77
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.60 E-value=2.6e-15 Score=120.43 Aligned_cols=103 Identities=18% Similarity=0.387 Sum_probs=88.1
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ ++++.++||+++|+||++||++|+.++|.|.+++++ +++++|+.|.+ .+.++++.++++ +.
T Consensus 3 f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~-~~ 74 (123)
T cd03011 3 FTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG-YG 74 (123)
T ss_pred ceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-CC
Confidence 458889999 999999999999999999999999999999999876 34888888754 678889999877 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|+..+....+++.|++.++|+++++|++| ++.
T Consensus 75 ~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 75 FPVINDPDGVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred ccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 666555667899999999999999999888 653
No 78
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.60 E-value=5.9e-15 Score=121.53 Aligned_cols=114 Identities=24% Similarity=0.399 Sum_probs=93.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhCC-CcEEEEEEecCCC---hhHHHHHHHh
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~-C~~~~p~l~~~~~~~~~~~-~~~~vv~v~~d~~---~~~~~~~~~~ 98 (390)
.+.+.+.+|+ +++++++||+++|.||++||++ |...++.|+++++++++++ .++++++|++|.. .+.+++|+++
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~ 83 (142)
T cd02968 4 DFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA 83 (142)
T ss_pred ceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999 9999999999999999999997 9999999999999998754 4599999999853 4678899998
Q ss_pred CC--CcceecChhHHHHHHHhcCcCC--------------CCeEEEEcCCCccccc
Q 016358 99 MP--WLAVPFDETLHKKLRIRYRVDR--------------IPSLIPLASDGTLIEE 138 (390)
Q Consensus 99 ~~--~~~~~~~~~~~~~l~~~~~v~~--------------~P~~~~~d~~G~i~~~ 138 (390)
++ |..+....+....+++.||+.. .|+++|+|++|+++..
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 84 FGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred hCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 75 4434333445578999999653 4579999999998753
No 79
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.60 E-value=4.1e-15 Score=122.67 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=93.5
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ ++|++++||+++|+||++| |++|+.++|.|.+++++++ + +++++|+.|. ....++|.+++....
T Consensus 9 f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~~~~~~~~ 83 (143)
T cd03014 9 FTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWCGAEGVDN 83 (143)
T ss_pred cEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHHHhcCCCC
Confidence 458899999 9999999999999999998 6999999999999999974 3 8899999985 456688888887556
Q ss_pred eecChhHH-HHHHHhcCcCC------CCeEEEEcCCCccccccc
Q 016358 104 VPFDETLH-KKLRIRYRVDR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 104 ~~~~~~~~-~~l~~~~~v~~------~P~~~~~d~~G~i~~~~~ 140 (390)
+++..+.. ..+++.||+.. .|+.+++|++|+|+....
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 77756554 88999999863 699999999999987665
No 80
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.60 E-value=9.8e-15 Score=113.07 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=61.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+|++|||+|||+||++|+.+.|.|++++++++ ++.++.|+.|.+. ....++++|
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~--------------------~~~~l~~~~ 67 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDEND--------------------STMELCRRE 67 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCCh--------------------HHHHHHHHc
Confidence 357999999999999999999999999999883 3677777776542 125789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016358 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++||++++ ++|+++.+
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCCcCCEEEEE-eCCeEEEE
Confidence 99999998888 89998876
No 81
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.59 E-value=3.7e-14 Score=120.45 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=67.9
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHHHH
Q 016358 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF 253 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 253 (390)
..++|++ +.+|+.+++++++||+|||.|||+||++|. .++.|++++++|++ .++.|++++++ .+.+++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence 4678888 999999999999999999999999999996 69999999999986 78999999985 245677
Q ss_pred HHhhh-cCCcccccC
Q 016358 254 DLNHS-IMPWLAIPY 267 (390)
Q Consensus 254 ~~~~~-~~~~~~~~~ 267 (390)
.+++. .++ +.+|+
T Consensus 80 ~~f~~~~~g-~~Fpv 93 (183)
T PRK10606 80 KTYCRTTWG-VTFPM 93 (183)
T ss_pred HHHHHHccC-CCcee
Confidence 77775 444 34554
No 82
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.59 E-value=8e-15 Score=120.41 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=96.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ +++++++||+++|+|| +.||++|...+|.|.+++++++..+ +++++|+.| +.+..++|.++++-.
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~~~~~~~~~~~ 80 (140)
T cd02971 4 DFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSHKAWAEKEGGL 80 (140)
T ss_pred CceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHhcccCC
Confidence 3568899999 9999999999999999 7899999999999999999997666 899999987 455688888887335
Q ss_pred ceecChhHHHHHHHhcCcCCCC---------eEEEEcCCCcccccccc
Q 016358 103 AVPFDETLHKKLRIRYRVDRIP---------SLIPLASDGTLIEEDLI 141 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P---------~~~~~d~~G~i~~~~~~ 141 (390)
.+++..+....+.+.||+...| +.+++|++|++++....
T Consensus 81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEec
Confidence 6666566667899999988766 89999999999976543
No 83
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.6e-15 Score=117.73 Aligned_cols=86 Identities=24% Similarity=0.537 Sum_probs=70.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+.||+|+|||+||+||+.+.|.|+++..+|+ +.+++.-|++|.. .+++.+|+|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~I 113 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYEI 113 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcce
Confidence 4899999999999999999999999999996 6788888888863 789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016358 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++||+++| ++|+.+.+ ..|+.+ -+.|.+.+++
T Consensus 114 ~avPtvlvf-knGe~~d~-------~vG~~~-------~~~l~~~i~k 146 (150)
T KOG0910|consen 114 SAVPTVLVF-KNGEKVDR-------FVGAVP-------KEQLRSLIKK 146 (150)
T ss_pred eeeeEEEEE-ECCEEeee-------ecccCC-------HHHHHHHHHH
Confidence 999999999 56665544 677766 4445554544
No 84
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.58 E-value=7.2e-15 Score=122.78 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=93.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
...+.+.+|+ +++++++||+++|+||++ ||+.|...++.|.++++++++.+ +++++|+.| +.+++++|+++++ +
T Consensus 12 ~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d-~~~~~~~~~~~~~-~ 87 (154)
T PRK09437 12 KFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD-KPEKLSRFAEKEL-L 87 (154)
T ss_pred CcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHHHHHhC-C
Confidence 4558899999 999999999999999976 67889999999999999999877 899999998 4577889999876 4
Q ss_pred ceecChhHHHHHHHhcCcCCC------------CeEEEEcCCCccccc
Q 016358 103 AVPFDETLHKKLRIRYRVDRI------------PSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~------------P~~~~~d~~G~i~~~ 138 (390)
.+|+..+....+.+.|++... |+.+++|++|+++..
T Consensus 88 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 88 NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred CCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 566655556789999998654 678999999998864
No 85
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.57 E-value=1.3e-14 Score=112.37 Aligned_cols=71 Identities=18% Similarity=0.448 Sum_probs=62.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+|||+||+||+.+.|.|.+++++++ +.+.++.|.+|. ..++++.|+|
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~-----------------------~~~la~~~~V 66 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDE-----------------------VPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCC-----------------------CHHHHHHcCC
Confidence 5799999999999999999999999999987 346777777775 4789999999
Q ss_pred cccceEEEECCCCcEEeeC
Q 016358 282 KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~ 300 (390)
.++||++++ ++|+++.+.
T Consensus 67 ~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 788888774
No 86
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.57 E-value=5.2e-15 Score=121.25 Aligned_cols=78 Identities=24% Similarity=0.503 Sum_probs=66.7
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016358 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
...+||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+.. ..++++
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~ 71 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDR 71 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHH
Confidence 3347999999999999999999999999999998754 7789998885542 467889
Q ss_pred cCcCCCCeEEEEcCCCcccccc
Q 016358 118 YRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+|.++|++++++++|+++.+.
T Consensus 72 ~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 72 YRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred cCCCCCCEEEEECCCCCEEEEE
Confidence 9999999999999899887543
No 87
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.57 E-value=9.6e-15 Score=125.30 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=84.5
Q ss_pred cceeecCCCc-cccCccCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~v-ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
.+++.+.+|+ +++++++||++ ++.|||+|||+|+.++|.|+++++++++++ ++|++|++|. +.+...+|
T Consensus 22 ~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~~~~~f 99 (183)
T PTZ00256 22 EFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEPEIKEY 99 (183)
T ss_pred ceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHHHHHHH
Confidence 4568899999 99999999965 566799999999999999999999999877 9999999752 34567788
Q ss_pred HH-hCCCcceecCh----h--HHHHHH------------HhcCcCCCCe---EEEEcCCCccccccc
Q 016358 96 FK-CMPWLAVPFDE----T--LHKKLR------------IRYRVDRIPS---LIPLASDGTLIEEDL 140 (390)
Q Consensus 96 ~~-~~~~~~~~~~~----~--~~~~l~------------~~~~v~~~P~---~~~~d~~G~i~~~~~ 140 (390)
+. +++ +.+|... + ....+. ..+++.++|+ .+|+|++|+++.+..
T Consensus 100 ~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 100 VQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 75 444 3444421 1 111222 1235778995 699999999997654
No 88
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.56 E-value=1.5e-14 Score=120.12 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCccCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016358 25 VEFLLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~g-k~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
...+.+.+|+ +++++++| |+++|.|| ++||+.|...+|.|+++++++++.+ +++++|+.|. .+..++|.++++
T Consensus 9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~~~~~~- 84 (149)
T cd03018 9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAWAEENG- 84 (149)
T ss_pred CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHHHHhcC-
Confidence 3457888999 99999999 99888888 9999999999999999999998766 8899999884 456888888776
Q ss_pred cceecChhHH--HHHHHhcCcCC----C--CeEEEEcCCCccccccc
Q 016358 102 LAVPFDETLH--KKLRIRYRVDR----I--PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~--~~l~~~~~v~~----~--P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..+.. ..+++.|++.. + |+.+++|++|++++...
T Consensus 85 ~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 85 LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 4566655544 78999999873 3 48999999999987654
No 89
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.56 E-value=1.6e-14 Score=122.96 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=89.3
Q ss_pred eeecCCC----c-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC-
Q 016358 27 FLLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM- 99 (390)
Q Consensus 27 ~l~~~~g----~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~- 99 (390)
.+.+.+| + ++|++++||+++|+|| ++||++|...++.|++++++|.+.+ +.+++|++|... ..+.+.+.+
T Consensus 9 ~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~-~~~~~~~~~~ 85 (173)
T cd03015 9 KATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF-SHLAWRNTPR 85 (173)
T ss_pred EeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH-HHHHHHHhhh
Confidence 4666665 7 9999999999999999 8999999999999999999998877 899999998543 233343332
Q ss_pred -----CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016358 100 -----PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 -----~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+++..+....+++.|++. ..|+.+|+|++|++++...
T Consensus 86 ~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 86 KEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred hhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 1245666666778999999986 5789999999999997764
No 90
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.55 E-value=1.9e-14 Score=111.41 Aligned_cols=73 Identities=15% Similarity=0.326 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+|||+||+||+.+.|.|.++++++++. +.++-|++| +. ..++++|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD--~~---------------------~~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDID--EV---------------------PDFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECC--CC---------------------HHHHHHcCC
Confidence 5789999999999999999999999999998764 455555555 32 689999999
Q ss_pred CCCCeEEEEcCCCccccccc
Q 016358 121 DRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~~ 140 (390)
.++||++++. +|+.+.+..
T Consensus 67 ~~iPTf~~fk-~G~~v~~~~ 85 (114)
T cd02954 67 YDPPTVMFFF-RNKHMKIDL 85 (114)
T ss_pred CCCCEEEEEE-CCEEEEEEc
Confidence 9999999996 898886553
No 91
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=3.6e-14 Score=117.03 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016358 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
|+.+++++ +.+|+|||+||++|++++|.|++++++|+ +.|++|++|.... . .+|...+.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~ 102 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPA 102 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCC
Confidence 55555544 46999999999999999999999998873 5799999886431 1 22222211
Q ss_pred H-HHHHHHc---cccccceEEEECCCCcEEe
Q 016358 272 R-QDLCRIF---NIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 272 ~-~~l~~~~---~v~~~P~~~lid~~G~v~~ 298 (390)
. ..+...| ++.++|+++|||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 1 2233455 8899999999999988654
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.54 E-value=2.1e-14 Score=111.23 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=61.0
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016358 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
+.+||+|+|+|||+||++|+.++|.|+++++++. + +.++.|++|.+.. ...++++|
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~--v~~~~vd~d~~~~--------------------~~~l~~~~ 67 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--D--VVFLLVNGDENDS--------------------TMELCRRE 67 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--CEEEEEECCCChH--------------------HHHHHHHc
Confidence 3469999999999999999999999999999982 2 6677777665432 25789999
Q ss_pred CcCCCCeEEEEcCCCcccc
Q 016358 119 RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~ 137 (390)
+|.++||++++ ++|+++.
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~ 85 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIH 85 (103)
T ss_pred CCCcCCEEEEE-eCCeEEE
Confidence 99999999988 5898764
No 93
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.54 E-value=1.9e-14 Score=110.61 Aligned_cols=68 Identities=16% Similarity=0.354 Sum_probs=56.1
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+++||+|+|+|||+||++|+.+.|.|.++++.+++ +.++.|..+.. ...++++
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-----~~~~~vd~~~~----------------------~~~l~~~ 67 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-----IRHLAIEESSI----------------------KPSLLSR 67 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-----CceEEEECCCC----------------------CHHHHHh
Confidence 46789999999999999999999999999999852 55666544311 3678999
Q ss_pred ccccccceEEEECCC
Q 016358 279 FNIKGIPALVLIGPD 293 (390)
Q Consensus 279 ~~v~~~P~~~lid~~ 293 (390)
|+|.++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999644
No 94
>PHA02278 thioredoxin-like protein
Probab=99.53 E-value=4.4e-14 Score=108.61 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=61.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++|+|+|||+||+||+.+.|.+.++.+++. .++.++.|.+|.+.. ....++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~~-------------------d~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAEDV-------------------DREKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCcccc-------------------ccHHHHHHCC
Confidence 46899999999999999999999999988754 345788888886420 0256899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+.+.+
T Consensus 70 I~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred CccccEEEEE-ECCEEEEE
Confidence 9999999999 67888776
No 95
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.53 E-value=5.9e-14 Score=110.25 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=62.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+|++++|+|||+||++|+.+.|.+.++.+++++ .++.++.|++|. ...++++|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~-----------------------~~~l~~~~ 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGH-----------------------ERRLARKL 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEeccc-----------------------cHHHHHHc
Confidence 3579999999999999999999999999999974 457777777764 36788999
Q ss_pred cccccceEEEECCCCcEEee
Q 016358 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++++ ++|+++.+
T Consensus 76 ~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 76 GAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CCccCCEEEEE-ECCEEEEE
Confidence 99999999999 58887766
No 96
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=2.4e-14 Score=120.01 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=76.7
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+..+...+|+ +++++++ +|+||++|||+|++++|.|++++++++ ++|++|++|.+.+ .
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~-----------~ 113 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGD-----------T 113 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCC-----------C
Confidence 44556667999 9999997 777999999999999999999999973 7899999986643 4
Q ss_pred ceecCh-hHHHHHHHhcCc--CCCCeEEEEcCCCccccc
Q 016358 103 AVPFDE-TLHKKLRIRYRV--DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~-~~~~~l~~~~~v--~~~P~~~~~d~~G~i~~~ 138 (390)
.+|... +....+.+.|++ .++|+.+++|++|+++..
T Consensus 114 ~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 114 AFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred CCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 555533 234567888995 699999999999998643
No 97
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.53 E-value=3.5e-14 Score=117.85 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=90.2
Q ss_pred cceeecCCCc-cccCccC-CC-EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016358 25 VEFLLSRQGK-VPLSSCG-GK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~-gk-~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
..+|.+.+|+ ++++++. ++ ++|++||++||++|+.++|.|.++++++++.+ +++++|+.|... ...+|.+.+.
T Consensus 4 ~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~-~~~~~~~~~~- 79 (149)
T cd02970 4 DFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPE-KLEAFDKGKF- 79 (149)
T ss_pred CccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHH-HHHHHHHhcC-
Confidence 3458889999 9999874 45 55555569999999999999999999998777 999999988544 4456777665
Q ss_pred cceecChhHHHHHHHhcCcC-----------------------------CCCeEEEEcCCCcccccc
Q 016358 102 LAVPFDETLHKKLRIRYRVD-----------------------------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|....+.+.||+. ..|..+|+|++|++++..
T Consensus 80 ~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 80 LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 56788777778999999984 799999999999988654
No 98
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=8.1e-14 Score=107.73 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=60.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+|||+||++|+.+.|.|.+++++++. ..+.++.++.| . ..++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence 368999999999999999999999999999863 45677777777 2 45789999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|+++|+++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CCcCcEEEEE-ECCEEEEE
Confidence 9999998888 68888776
No 99
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.53 E-value=2.8e-14 Score=122.80 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=87.1
Q ss_pred eec-CCCc---cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh---C
Q 016358 28 LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC---M 99 (390)
Q Consensus 28 l~~-~~g~---~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~ 99 (390)
+.+ .+|+ +++++++||+++|+|| ++||++|..+++.|.++++++++.+ ++|++|+.|... ..++|.+. .
T Consensus 13 l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~~~~~~~~~~~ 89 (187)
T TIGR03137 13 ATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VHKAWHDTSEAI 89 (187)
T ss_pred eeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HHHHHHhhhhhc
Confidence 565 4564 7788999999999999 9999999999999999999998777 889999998642 33344332 2
Q ss_pred CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016358 100 PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+|+..+....+++.||+. ..|+.+++|++|++++...
T Consensus 90 ~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 90 GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 2245666666678999999986 4699999999999986553
No 100
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.8e-14 Score=113.89 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=97.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.++|.+.+|+ ++|++++||+|+|+|| ..++|.|..++-.+++.+.+|++.| .+|++||.| +..+.++|.+++. +
T Consensus 12 dF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D-s~~~~~~F~~k~~-L 87 (157)
T COG1225 12 DFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD-SPKSHKKFAEKHG-L 87 (157)
T ss_pred CeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHHHHHHHHHhC-C
Confidence 3459999999 9999999999999999 7789999999999999999999987 899999999 5667899999988 5
Q ss_pred ceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCcccc
Q 016358 103 AVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~ 137 (390)
.+++..|...+++++||+. ..++.++||++|+|.+
T Consensus 88 ~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 88 TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred CceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 6888888889999999984 3579999999999875
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.52 E-value=3.3e-14 Score=119.94 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=76.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEE------EEEecCCChhHHHHH----HHhCCCcce
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------IFISFDHDENGFEEH----FKCMPWLAV 104 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~----~~~~~~~~~ 104 (390)
++.++++||+++|+|||+||++|+.++|.|.++.+ ++ +.+ ++|+.|++......| +++.. ..+
T Consensus 52 ~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~ 124 (184)
T TIGR01626 52 WGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----AK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KEN 124 (184)
T ss_pred ccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----cC--CCcccccceEEEECccchhhHHHHHHHHHHHhc-ccC
Confidence 77888999999999999999999999999999833 34 677 999998765443344 44332 222
Q ss_pred e---cChhHHHHHHHhcCcCCCCeE-EEEcCCCcccccccc
Q 016358 105 P---FDETLHKKLRIRYRVDRIPSL-IPLASDGTLIEEDLI 141 (390)
Q Consensus 105 ~---~~~~~~~~l~~~~~v~~~P~~-~~~d~~G~i~~~~~~ 141 (390)
| +..|....+...|++.++|+. +++|++|+++.+...
T Consensus 125 P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G 165 (184)
T TIGR01626 125 PWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG 165 (184)
T ss_pred CcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC
Confidence 2 444446788899999999888 899999999866543
No 102
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.52 E-value=1.2e-13 Score=105.68 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=60.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.++++.+. ..+.++.|+++. ...++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~-----------------------~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDA-----------------------QPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccC-----------------------CHHHHHHcC
Confidence 46899999999999999999999999999986 346667776664 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++++ +|+++.+
T Consensus 64 i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe-CCEEeee
Confidence 99999999995 8887755
No 103
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.51 E-value=5.4e-14 Score=120.20 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=89.6
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC---CCc
Q 016358 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM---PWL 102 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~---~~~ 102 (390)
+.+.+.. ++|++++||+++|+|| +.||+.|..+++.|.++++++.+.+ ++|++||.|.. ...++|.+.. .-+
T Consensus 16 ~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~~a~~~~~~~~~~l 92 (187)
T PRK10382 16 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTHKAWHSSSETIAKI 92 (187)
T ss_pred EeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHhhccccCC
Confidence 3343444 8899999999999999 9999999999999999999999877 89999998853 4455565532 235
Q ss_pred ceecChhHHHHHHHhcCc----CCC--CeEEEEcCCCccccccc
Q 016358 103 AVPFDETLHKKLRIRYRV----DRI--PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v----~~~--P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..|....+++.||+ .++ |+.+++|++|+|++...
T Consensus 93 ~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 93 KYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred ceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 677777788999999998 356 99999999999987644
No 104
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.5e-14 Score=121.09 Aligned_cols=123 Identities=18% Similarity=0.317 Sum_probs=90.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|.|+|+|+|.||+||+...|.+..+..+|++ .|++.+|.++ .+..+..+|
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~g 71 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATNG 71 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhcC
Confidence 358999999999999999999999999999985 6777777654 678899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCCC------------------------
Q 016358 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR------------------------ 336 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~------------------------ 336 (390)
|.++||++++ ++|..+..+.|+. ...|++.+.+.++..+.
T Consensus 72 V~amPTFiff--------~ng~kid~~qGAd--------~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~gle 135 (288)
T KOG0908|consen 72 VNAMPTFIFF--------RNGVKIDQIQGAD--------ASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLE 135 (288)
T ss_pred cccCceEEEE--------ecCeEeeeecCCC--------HHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhcce
Confidence 9999999999 5555555577766 44455555553332111
Q ss_pred -ccccCCCccceeecCCC-ceeecccCCCCceE
Q 016358 337 -EVKDVKHEHELKLDMAK-AYVCDCCKMRGRFW 367 (390)
Q Consensus 337 -~~~~~~h~~~l~l~~~~-~~iC~~C~e~~~~~ 367 (390)
..+...|.....+.... .++-++|+||+...
T Consensus 136 clNqsddH~l~nalkk~~ss~lesD~DeQl~is 168 (288)
T KOG0908|consen 136 CLNQSDDHFLKNALKKNFSSNLESDCDEQLIIS 168 (288)
T ss_pred eeccccccchHHHHhhccccceecccccceEEE
Confidence 23445665555555444 78999999998654
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.51 E-value=4.9e-14 Score=149.84 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCc-ccc-CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec---CC--ChhHHHHHHHhCCCcc
Q 016358 31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF---DH--DENGFEEHFKCMPWLA 103 (390)
Q Consensus 31 ~~g~-~~l-~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~---d~--~~~~~~~~~~~~~~~~ 103 (390)
.+|+ +++ ++++||+|||+|||+||++|+.++|.|++++++|++++ +.|+.|++ |. +.+.+++++.+++ +.
T Consensus 407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~~~~~~~~~~~~~-i~ 483 (1057)
T PLN02919 407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKDLEAIRNAVLRYN-IS 483 (1057)
T ss_pred cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccccHHHHHHHHHHhC-CC
Confidence 5788 887 58999999999999999999999999999999998766 99999974 33 4567888888776 34
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|...+....+.++|++.++|+++++|++|+++.+.
T Consensus 484 ~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 484 HPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred ccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 555455567899999999999999999999998653
No 106
>PHA02278 thioredoxin-like protein
Probab=99.50 E-value=8e-14 Score=107.17 Aligned_cols=76 Identities=14% Similarity=0.345 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+|||+||+||+.+.|.+.++++++... ..++.|++|.+.. + ...++++|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 6899999999999999999999999998875433 5688888885431 0 1478999999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016358 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||++++. +|+.+.+-
T Consensus 71 ~~iPT~i~fk-~G~~v~~~ 88 (103)
T PHA02278 71 MSTPVLIGYK-DGQLVKKY 88 (103)
T ss_pred ccccEEEEEE-CCEEEEEE
Confidence 9999999996 88877543
No 107
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.49 E-value=5.8e-14 Score=107.95 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=56.6
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016358 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
++.+||+++|.|||+||++|+.++|.|.++++++++ +.++.| |.+.+ ...++++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~v--d~~~~--------------------~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAI--EESSI--------------------KPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEE--ECCCC--------------------CHHHHHh
Confidence 356899999999999999999999999999999864 445555 43311 2588999
Q ss_pred cCcCCCCeEEEEcCCC
Q 016358 118 YRVDRIPSLIPLASDG 133 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G 133 (390)
|++.++||+++++ +|
T Consensus 68 ~~V~~~PT~~lf~-~g 82 (100)
T cd02999 68 YGVVGFPTILLFN-ST 82 (100)
T ss_pred cCCeecCEEEEEc-CC
Confidence 9999999999997 55
No 108
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.5e-13 Score=121.45 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=67.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+.+||||+||++||++|+.+.|.|.++..+|+ +.+.++.|++|.+ ..++..||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence 44799999999999999999999999999998 6788888888864 78999999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016358 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
|+++|++|+| .+|+.+....|..+
T Consensus 95 iqsIPtV~af--------~dGqpVdgF~G~qP 118 (304)
T COG3118 95 VQSIPTVYAF--------KDGQPVDGFQGAQP 118 (304)
T ss_pred cCcCCeEEEe--------eCCcCccccCCCCc
Confidence 9999999999 66667666888776
No 109
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.48 E-value=1.3e-13 Score=120.03 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=88.5
Q ss_pred eeecCCCccccCccCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HH-HHHHHhCCC-
Q 016358 27 FLLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GF-EEHFKCMPW- 101 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll-~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~-~~~~~~~~~- 101 (390)
.+.+..|.+++++++||+++| +||++||++|..+++.|.++++++++.+ ++|++|++|.... +| +.+.++.+.
T Consensus 12 ~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~ 89 (202)
T PRK13190 12 TVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIK 89 (202)
T ss_pred EEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCC
Confidence 355666669999999997766 6889999999999999999999999877 8999999996432 33 233334442
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016358 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|....+++.||+. .+|+.++||++|+|++..
T Consensus 90 ~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 90 IPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred ceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 56788777779999999984 589999999999988544
No 110
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.47 E-value=1.4e-13 Score=120.49 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred hhccCcce-eecCCCc-cccCccCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC--hhHHHH
Q 016358 20 LASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--ENGFEE 94 (390)
Q Consensus 20 ~~~~~~~~-l~~~~g~-~~l~~~~gk~v-ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~ 94 (390)
++...+++ +.+.+|+ +.+++++||++ |++||++|||+|..+++.|.+++++|++.+ ++|++||+|.. ...|.+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence 33344444 7788999 77789999975 678889999999999999999999999887 89999999964 335667
Q ss_pred HHHhCC--CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCcccccc
Q 016358 95 HFKCMP--WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 95 ~~~~~~--~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~ 139 (390)
+++++. -+.+|+..|....+++.||+. ..|+.+++|++|+++...
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 776531 256777667778999999983 689999999999998653
No 111
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.47 E-value=3.5e-13 Score=112.23 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhccCCceEE-eCC---CCeeeecc-cCCcEEEEEE-ccCCCcccHhh-HHHHHHHHHHhhcccCCce-EEEEEecCCCH
Q 016358 179 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIGLYF-GAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~---g~~~~l~~-~~gk~vlv~F-~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~~ 250 (390)
+|+.+|+|++ +.+ |+.+++++ ++||++||+| .+.||+.|..+ ++.|++.+++|.+ .+. .|++|+.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCHH
Confidence 4788999999 664 99999999 5887555555 58999999999 9999999999986 777 69999998643
Q ss_pred HHHHHhhhcCCc-ccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016358 251 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
...++...+.. ..+|+..|.+..+++.||+. ..+.+++|| +|+|++..
T Consensus 78 -~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 78 -VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred -HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 45555555554 47888888899999999983 146789999 79999873
No 112
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.47 E-value=1.7e-13 Score=105.83 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=63.8
Q ss_pred ecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecC
Q 016358 29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFD 107 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 107 (390)
+.+++. +.....++++++|.||++||++|+.+.|.+.++++++++. +.+..|++| .+
T Consensus 4 ~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~--~~----------------- 61 (101)
T cd03003 4 VTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCG--DD----------------- 61 (101)
T ss_pred EEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCC--cc-----------------
Confidence 344455 5444456799999999999999999999999999999754 555555555 32
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016358 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|+++++||++++ ++|+.+
T Consensus 62 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 62 ----RMLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred ----HHHHHHcCCCccCEEEEE-cCCCCc
Confidence 578999999999999999 578654
No 113
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.9e-13 Score=104.11 Aligned_cols=74 Identities=23% Similarity=0.567 Sum_probs=61.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|.++|+|+|+||+||+.+.|.+.+|+.+|++ +.++.|++|. ..++++.|+|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-----v~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-----VVFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-----CEEEEEeccc-----------------------CHhHHHhcCc
Confidence 59999999999999999999999999999973 5666666664 3789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCcc
Q 016358 282 KGIPALVLIGPDGKTISTNGKEMISLYGAK 311 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~ 311 (390)
.++||++++ ++|+.+.+ ..|+.
T Consensus 73 ~~~PTf~f~-k~g~~~~~-------~vGa~ 94 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVDE-------VVGAN 94 (106)
T ss_pred eEeeEEEEE-ECCEEEEE-------EecCC
Confidence 999999999 55555544 67765
No 114
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.45 E-value=4.9e-13 Score=103.83 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=61.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.||+++|+||++||++|+.+.+.+ .++.+.+. +++.++.|..+.+. .....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence 468999999999999999999887 57777775 36777777765432 11367889
Q ss_pred HccccccceEEEECC-CCcEEee
Q 016358 278 IFNIKGIPALVLIGP-DGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~-~G~v~~~ 299 (390)
+|++.++|+++++++ +|+++.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999998 8887766
No 115
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.45 E-value=6e-13 Score=106.99 Aligned_cols=85 Identities=25% Similarity=0.491 Sum_probs=64.3
Q ss_pred CC-cEEEEEEccCCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016358 201 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.| |+|+|+||++||++|+.+.|.+. ++.+.+. .++.++.|++|.+.... . ++........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 46 89999999999999999999885 5656664 46778888877643211 0 111112357899
Q ss_pred HHccccccceEEEECCC-CcEEee
Q 016358 277 RIFNIKGIPALVLIGPD-GKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~-G~v~~~ 299 (390)
++|+|.++|+++++|++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 899877
No 116
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-13 Score=110.08 Aligned_cols=69 Identities=22% Similarity=0.558 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.++||+|+|||+||+||+.+.|.|+++..+|.+. +.+.-|++|.. .+++.+|+|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~-----------------------~ela~~Y~I 113 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH-----------------------PELAEDYEI 113 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc-----------------------cchHhhcce
Confidence 4789999999999999999999999999999765 56666655532 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
+++||+++|+ +|+.+
T Consensus 114 ~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 114 SAVPTVLVFK-NGEKV 128 (150)
T ss_pred eeeeEEEEEE-CCEEe
Confidence 9999999996 88776
No 117
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.44 E-value=3.4e-13 Score=103.07 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++++|+||++||++|+.+.|.++++++.+.+. +.++. +|.+.. ..++++|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~--vd~~~~---------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAK--VNCDAQ---------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEE--EeccCC---------------------HHHHHHcCC
Confidence 5889999999999999999999999999998653 44444 444443 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++++ +|+.+
T Consensus 65 ~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 65 QALPTVYLFA-AGQPV 79 (96)
T ss_pred CCCCEEEEEe-CCEEe
Confidence 9999999997 88765
No 118
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.44 E-value=3.4e-13 Score=105.48 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=56.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH-Hhc
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR-IRY 118 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 118 (390)
.++++++|.|||+||++|+.+.|.+.++++++++. +.++.| |++.+ ..++ ++|
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~V--d~d~~---------------------~~l~~~~~ 80 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAI--NCWWP---------------------QGKCRKQK 80 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEE--ECCCC---------------------hHHHHHhc
Confidence 46799999999999999999999999999999754 444555 54443 4677 589
Q ss_pred CcCCCCeEEEEcCCCcc
Q 016358 119 RVDRIPSLIPLASDGTL 135 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i 135 (390)
+|.++||+.++. +|+.
T Consensus 81 ~I~~~PTl~lf~-~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLYY-RSRG 96 (113)
T ss_pred CCcccCEEEEEE-CCcc
Confidence 999999999995 7764
No 119
>PRK09381 trxA thioredoxin; Provisional
Probab=99.43 E-value=1.3e-12 Score=102.44 Aligned_cols=70 Identities=29% Similarity=0.573 Sum_probs=61.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|+++++++. .++.++.+++|.. ..++++|++
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 73 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYGI 73 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCCC
Confidence 5899999999999999999999999999987 4578888887753 567889999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 74 ~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 74 RGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred CcCCEEEEE-eCCeEEEE
Confidence 999999999 78998876
No 120
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.43 E-value=6e-13 Score=102.74 Aligned_cols=72 Identities=19% Similarity=0.366 Sum_probs=60.8
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
..+++++|+||++||++|+.+.|.+.+++++++ ..+.+..|++|. ...++++|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~-----------------------~~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGD-----------------------DRMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCc-----------------------cHHHHHHc
Confidence 346899999999999999999999999999987 457777777775 36789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016358 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++||++++ ++|+.+.+
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 69 GVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CCCccCEEEEE-cCCCCccc
Confidence 99999999999 67765443
No 121
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.43 E-value=5.8e-13 Score=102.95 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|++++|+|||+||++|+.+.|.|.++++++++.. +.++.++.| . ..++++|++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d--~----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD--T----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC--C----------------------HHHHHHcCC
Confidence 58999999999999999999999999999987543 556666655 2 467899999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016358 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
+++|+++++. +|+.+.+
T Consensus 70 ~~~Pt~~~~~-~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFYK-NGELVAV 86 (102)
T ss_pred CcCcEEEEEE-CCEEEEE
Confidence 9999999995 8877644
No 122
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.43 E-value=3.8e-13 Score=106.30 Aligned_cols=96 Identities=21% Similarity=0.448 Sum_probs=67.2
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++|+|+|+|||+||++|+.+.|.+.+..+... .+..++.|.+|.+. ....+.|
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~~~~~ 70 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPKDEEF 70 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cchhhhc
Confidence 356999999999999999999999998766543 22346666766542 2234577
Q ss_pred cccc--cceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHH
Q 016358 280 NIKG--IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET 325 (390)
Q Consensus 280 ~v~~--~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~ 325 (390)
++.+ +|+++++|++|+++.+ +...+|...+......+.++..
T Consensus 71 ~~~g~~vPt~~f~~~~Gk~~~~----~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 SPDGGYIPRILFLDPSGDVHPE----IINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ccCCCccceEEEECCCCCCchh----hccCCCCccccccCCCHHHHHh
Confidence 7765 9999999999999875 2224555555444455555543
No 123
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.42 E-value=9.1e-13 Score=103.06 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH-HHc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 279 (390)
.+++++|.|||+||++|+.+.|.+.+++++++ +.+.++.|++|.+ ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence 45899999999999999999999999999996 3467777776643 5676 589
Q ss_pred cccccceEEEECCCCcE
Q 016358 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|.++||++++ ++|+.
T Consensus 81 ~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLY-YRSRG 96 (113)
T ss_pred CCcccCEEEEE-ECCcc
Confidence 99999999999 56664
No 124
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.42 E-value=5.5e-13 Score=104.70 Aligned_cols=72 Identities=14% Similarity=0.400 Sum_probs=59.8
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..|++++|+||++||++|+.+.|.+.++++++++.+ +.+..|++| .+ ..++++|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d--~~---------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAG--HE---------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecc--cc---------------------HHHHHHcC
Confidence 468999999999999999999999999999997643 555555544 32 57889999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016358 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
|.++|++++++ +|+.+.
T Consensus 77 V~~~Pt~~i~~-~g~~~~ 93 (111)
T cd02963 77 AHSVPAIVGII-NGQVTF 93 (111)
T ss_pred CccCCEEEEEE-CCEEEE
Confidence 99999999995 887653
No 125
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.42 E-value=4e-13 Score=110.79 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=61.2
Q ss_pred CCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016358 32 QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 32 ~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
.|+ +++++ +.+|+||++||++|++++|.|++++++++ ++|++|++|.... ...+ ..++.+.
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~------~~fp---~~~~~~~ 104 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL------TGFP---DPLPATP 104 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc------cccc---cccCCch
Confidence 355 55544 45999999999999999999999999873 6799999986431 1111 1111111
Q ss_pred HHHHHHhc---CcCCCCeEEEEcCCCcccc
Q 016358 111 HKKLRIRY---RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 111 ~~~l~~~~---~v~~~P~~~~~d~~G~i~~ 137 (390)
......| ++.++|+++++|++|.++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2233445 8899999999999988653
No 126
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.41 E-value=1.2e-12 Score=107.76 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=69.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.++++++.+ .++.++.|++|.. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence 357999999999999999999999999999864 5688888888764 57788888
Q ss_pred ccc------cceEEEECCCCcEEeeCcchhhhhcCccCCCCCh
Q 016358 281 IKG------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTE 317 (390)
Q Consensus 281 v~~------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~ 317 (390)
|.+ +||++++ ++|+.+.+........-+..++-++.
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~ 141 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSK 141 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccH
Confidence 877 9999999 68988877433333333444444443
No 127
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.41 E-value=1.2e-12 Score=114.08 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=86.1
Q ss_pred ceeecCCCccccCccCC-CEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHhC--
Q 016358 26 EFLLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCM-- 99 (390)
Q Consensus 26 ~~l~~~~g~~~l~~~~g-k~v-ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~~-- 99 (390)
+.+.+.+|.++++++.| |++ |++||++|||.|..+++.|.++++++++.+ ++|++|++|.... .|.+.+++.
T Consensus 8 F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~ 85 (203)
T cd03016 8 FEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTG 85 (203)
T ss_pred eEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcC
Confidence 34666777789999988 655 557889999999999999999999999887 8999999996432 233322221
Q ss_pred CCcceecChhHHHHHHHhcCcC----C----CCeEEEEcCCCccccccc
Q 016358 100 PWLAVPFDETLHKKLRIRYRVD----R----IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+|+..|....+++.||+. + .|+.+|||++|+|+....
T Consensus 86 ~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 86 VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 1256677777779999999985 2 357999999999986543
No 128
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.41 E-value=1.3e-12 Score=102.98 Aligned_cols=95 Identities=22% Similarity=0.463 Sum_probs=65.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.||+++++||++||++|+.+.+.+.+..+--.. ...++.++.+.++.............+. +.......++++.||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 479999999999999999999988865442221 1246889999888765444444332221 222234568999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999998876
No 129
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.40 E-value=8.2e-13 Score=117.90 Aligned_cols=119 Identities=12% Similarity=0.130 Sum_probs=90.5
Q ss_pred hhccCcce-eec-CCC--c-cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC--hh
Q 016358 20 LASEGVEF-LLS-RQG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--EN 90 (390)
Q Consensus 20 ~~~~~~~~-l~~-~~g--~-~~l~~~-~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~--~~ 90 (390)
++...+++ +.+ .+| . ++|+++ +||+++|+|| +.||++|..+++.|.++++++++.| ++|++|++|.. ..
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHK 147 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence 34344444 433 234 4 899997 8998888888 8999999999999999999999887 89999999863 22
Q ss_pred HHHHH-HHhC--CCcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCccccccc
Q 016358 91 GFEEH-FKCM--PWLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 91 ~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~~ 140 (390)
.|.+. .++. .-+.+|+..|....+++.||+. ..|+.++||++|+|++...
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 33332 2222 2356777777779999999985 5899999999999987554
No 130
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.40 E-value=2.3e-12 Score=99.48 Aligned_cols=68 Identities=22% Similarity=0.405 Sum_probs=56.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+|+ ++|+|||+||++|+.+.|.+.++++.++. .++.+..|.++. ...++++|+
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~-----------------------~~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQ-----------------------EPGLSGRFF 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccC-----------------------CHhHHHHcC
Confidence 455 68999999999999999999999987753 467777776664 356889999
Q ss_pred ccccceEEEECCCCcE
Q 016358 281 IKGIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~~~P~~~lid~~G~v 296 (390)
|.++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 78875
No 131
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.9e-12 Score=105.81 Aligned_cols=120 Identities=22% Similarity=0.351 Sum_probs=101.7
Q ss_pred HHhhccCCceEE-eC-CCC---eeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-
Q 016358 177 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 249 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~-~g~---~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~- 249 (390)
.++|.++|+|+. .. .|. +++++++.||+++|.||.. .-+.|..++..+++.|++|++ .+++|+++|+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f 79 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF 79 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence 467999999999 33 553 9999999999999999954 445599999999999999998 8999999999984
Q ss_pred -HHHHHHhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016358 250 -HKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 -~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
..+|.+...+.. -..+|...|...++++.||+. ++-.+++|||+|+|++.
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 577888865444 378899999999999999974 46789999999999876
No 132
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.39 E-value=9.2e-13 Score=119.35 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=69.8
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHH
Q 016358 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 272 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
+...+++++|+++||+||++||++|+.+.|.|++++++|. +.|++|++|.... ..+|... .+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-PD 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-CC
Confidence 3456778889999999999999999999999999999874 6899999987531 1233332 24
Q ss_pred HHHHHHccccccceEEEECCCCcEEe
Q 016358 273 QDLCRIFNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 273 ~~l~~~~~v~~~P~~~lid~~G~v~~ 298 (390)
..+++.|||.++|+++|+|++|+.+.
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 56889999999999999999654443
No 133
>PRK10996 thioredoxin 2; Provisional
Probab=99.39 E-value=3.4e-12 Score=104.34 Aligned_cols=71 Identities=27% Similarity=0.569 Sum_probs=60.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++|+|+||++||++|+.+.|.|.++++++. .++.++.|..+. ...++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~-----------------------~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEA-----------------------ERELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCC-----------------------CHHHHHhcC
Confidence 46899999999999999999999999999876 456676666654 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 104 V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999999998 58988876
No 134
>PRK15000 peroxidase; Provisional
Probab=99.39 E-value=9.3e-13 Score=114.19 Aligned_cols=102 Identities=18% Similarity=0.321 Sum_probs=81.2
Q ss_pred ccCcc-CCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHHHH-HHHhCC--CcceecCh
Q 016358 36 PLSSC-GGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEE-HFKCMP--WLAVPFDE 108 (390)
Q Consensus 36 ~l~~~-~gk~vll~F~~~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~~-~~~~~~--~~~~~~~~ 108 (390)
+++++ +||+++|+||+. ||+.|..+++.|.+++++|++.+ ++|++|++|... ..|.+ +.+..+ -+.+|+..
T Consensus 27 ~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 27 NFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 34444 799999999985 99999999999999999999887 899999999543 23333 222233 24677777
Q ss_pred hHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016358 109 TLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 109 ~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
|....+++.||+. ++|+.++||++|+|++..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 7778999999997 699999999999998654
No 135
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.39 E-value=1.7e-12 Score=101.72 Aligned_cols=70 Identities=27% Similarity=0.557 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.|++++|+||++||++|+.+.|.+.++++.+. ..+.++.|++|.+. ...+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence 36889999999999999999999999999986 45788888887632 467899999
Q ss_pred ccccceEEEECCCCc
Q 016358 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|+++++++++.
T Consensus 72 i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 72 VQGFPTLKVFRPPKK 86 (109)
T ss_pred CCcCCEEEEEeCCCc
Confidence 999999999977763
No 136
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.39 E-value=1.2e-12 Score=114.63 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=89.4
Q ss_pred eeecCCCcccc-CccCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHhC-C-
Q 016358 27 FLLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCM-P- 100 (390)
Q Consensus 27 ~l~~~~g~~~l-~~~~gk~vll-~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~~-~- 100 (390)
.+.+.+|++.+ ++++||+++| +||++||+.|..+++.|.+++++|++.| ++|++||+|.... .|.+++++. .
T Consensus 17 ~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~ 94 (215)
T PRK13191 17 EVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKV 94 (215)
T ss_pred EeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCC
Confidence 36777888555 5579997666 7789999999999999999999999887 8999999996543 466666542 1
Q ss_pred CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCccccccc
Q 016358 101 WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~~ 140 (390)
-+.+|+..|....+++.||+. ..|+.++||++|+|++...
T Consensus 95 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 141 (215)
T PRK13191 95 EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILY 141 (215)
T ss_pred CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEe
Confidence 256777777779999999974 4799999999999986544
No 137
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7.4e-13 Score=101.87 Aligned_cols=76 Identities=21% Similarity=0.549 Sum_probs=62.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
.+.....+|+++|+|||+|||||+.+.|.+.+++.+|.+ +.++-|++|. . ..+
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~---------------------~~~ 66 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L---------------------EEV 66 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C---------------------HhH
Confidence 334444579999999999999999999999999999986 3466666664 2 789
Q ss_pred HHhcCcCCCCeEEEEcCCCccccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++.+++..+||++++. +|+.+.+
T Consensus 67 ~~~~~V~~~PTf~f~k-~g~~~~~ 89 (106)
T KOG0907|consen 67 AKEFNVKAMPTFVFYK-GGEEVDE 89 (106)
T ss_pred HHhcCceEeeEEEEEE-CCEEEEE
Confidence 9999999999999994 7776643
No 138
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.38 E-value=1.7e-12 Score=100.76 Aligned_cols=70 Identities=19% Similarity=0.393 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.+.+++++++.. +.+..| |.+.. ..++++|+|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~v--d~~~~---------------------~~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSV--DCQKY---------------------ESLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEE--ECCch---------------------HHHHHHcCC
Confidence 4679999999999999999999999999998643 445544 44443 688999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||+++++.+|+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 72 RAYPTIRLYPGNASKY 87 (104)
T ss_pred CcccEEEEEcCCCCCc
Confidence 9999999997553544
No 139
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.38 E-value=1.3e-12 Score=102.15 Aligned_cols=75 Identities=20% Similarity=0.469 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCc-EEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE-LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
-.+++++|.||++||++|+.+.|.+.++++.+++...+ -.+.++.+|++.+ ..++++|
T Consensus 16 ~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---------------------~~l~~~~ 74 (108)
T cd02996 16 QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---------------------SDIADRY 74 (108)
T ss_pred hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---------------------HHHHHhC
Confidence 35789999999999999999999999999988643110 1255555555543 6899999
Q ss_pred CcCCCCeEEEEcCCCccc
Q 016358 119 RVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~ 136 (390)
+++++|+++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 478743
No 140
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.38 E-value=1.9e-12 Score=112.67 Aligned_cols=107 Identities=22% Similarity=0.227 Sum_probs=86.7
Q ss_pred cCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH---h---CCC
Q 016358 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---C---MPW 101 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~---~~~ 101 (390)
+.+|+ ++|++++||+++|+|| +.||++|..+++.|.+++++|++.+ ++|++|+.|..... ..+.. . ..-
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~-~~~~~~~~~~~~~~~ 99 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH-LQWTLQERKKGGLGT 99 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH-HHHHhChHhhCCccc
Confidence 56677 9999999999999999 4889999999999999999999887 99999999865432 22211 1 123
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016358 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|...++++.||+. .+|+.++||++|+++...
T Consensus 100 ~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 100 MAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred cccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 56778777789999999985 468999999999988643
No 141
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.38 E-value=2.1e-12 Score=101.84 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=56.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.+++++|++ +.++.|..+ . . .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-----v~f~~vd~~--~---------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-----TKFVKINAE--K---------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-----cEEEEEEch--h---------------------h-HHHHhcCC
Confidence 47899999999999999999999999999853 445544443 2 3 78999999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+.+.+
T Consensus 75 ~~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVY-KNGELIDN 91 (113)
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 78888876
No 142
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.38 E-value=2.1e-12 Score=99.27 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=58.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|+|||.|+|+||+||+.+.|.|.+++++|++ .+.++.|.+|. ..++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~----~~~f~kVDVDe-----------------------v~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK----MASIYLVDVDK-----------------------VPVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC----ceEEEEEeccc-----------------------cHHHHHhcC
Confidence 469999999999999999999999999999963 25666666664 478999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.+.||++++ ++|+-+..
T Consensus 66 I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 66 ISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred ceeCcEEEEE-ECCcEEEE
Confidence 9999999999 55554433
No 143
>PTZ00062 glutaredoxin; Provisional
Probab=99.37 E-value=3.2e-12 Score=109.97 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=50.0
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC
Q 016358 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR 122 (390)
Q Consensus 43 k~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 122 (390)
..++++|||+||++|+.+.|.|.++.+++.+ +.++.+|. + |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~------~~F~~V~~-------------------------d----~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS------LEFYVVNL-------------------------A----DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC------cEEEEEcc-------------------------c----cCccc
Confidence 5679999999999999999999999999854 55555551 1 89999
Q ss_pred CCeEEEEcCCCccccc
Q 016358 123 IPSLIPLASDGTLIEE 138 (390)
Q Consensus 123 ~P~~~~~d~~G~i~~~ 138 (390)
+|+++++. +|+.+.+
T Consensus 63 vPtfv~~~-~g~~i~r 77 (204)
T PTZ00062 63 YGVFEFYQ-NSQLINS 77 (204)
T ss_pred ceEEEEEE-CCEEEee
Confidence 99999995 8887754
No 144
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.36 E-value=2.2e-12 Score=99.07 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++|+|+|.|+++||+||+.+.|.|.++++++++. +.++.|++| +. .+++++|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVD--ev---------------------~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVD--KV---------------------PVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecc--cc---------------------HHHHHhcCc
Confidence 6899999999999999999999999999999753 334444444 43 689999999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016358 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
+..||++++. +|+-+.
T Consensus 67 ~amPtfvffk-ngkh~~ 82 (114)
T cd02986 67 SYIPSTIFFF-NGQHMK 82 (114)
T ss_pred eeCcEEEEEE-CCcEEE
Confidence 9999999996 665543
No 145
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.36 E-value=4.1e-12 Score=98.65 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=61.0
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
.+||+++|+||++||++|+.+.+.+ .++.+.+++ + +.++.|+++.+.. ....+++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~ 66 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLK 66 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHH
Confidence 3689999999999999999999987 577777765 3 6677776654321 1268899
Q ss_pred hcCcCCCCeEEEEcC-CCccccc
Q 016358 117 RYRVDRIPSLIPLAS-DGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~-~G~i~~~ 138 (390)
+|++.++|+++++++ +|+.+.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999998 7877643
No 146
>PRK13189 peroxiredoxin; Provisional
Probab=99.36 E-value=3.1e-12 Score=112.70 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=86.1
Q ss_pred ceeecCCCccccCc-cCCCEEE-EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHh-CC
Q 016358 26 EFLLSRQGKVPLSS-CGGKTIC-LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKC-MP 100 (390)
Q Consensus 26 ~~l~~~~g~~~l~~-~~gk~vl-l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~-~~ 100 (390)
+++.+.+|++++++ ++||+++ ++||++||+.|..+++.|.+++++|++.+ ++|++||+|.... +|.+.+.+ .+
T Consensus 18 F~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g 95 (222)
T PRK13189 18 FEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLG 95 (222)
T ss_pred cEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcC
Confidence 34677777777776 4999655 57789999999999999999999999877 8999999996442 33332222 22
Q ss_pred -CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCcccccc
Q 016358 101 -WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 -~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~ 139 (390)
-+.+|+..|....+++.||+. .+|+.+|||++|+|++..
T Consensus 96 ~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 96 VEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred cCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 256777777778999999975 469999999999997654
No 147
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.36 E-value=3.4e-11 Score=118.86 Aligned_cols=241 Identities=13% Similarity=0.183 Sum_probs=136.6
Q ss_pred cchhhhhhccCcceeecCCCc--cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhH
Q 016358 14 SDFLTVLASEGVEFLLSRQGK--VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~g~--~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 91 (390)
.+|...+.....+.+...+.. ..+.......+++.|-.....+|+.....+.++++++++.. +.++.+|..+
T Consensus 205 ~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----i~f~~~d~~~-- 278 (462)
T TIGR01130 205 SDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKF----VNFAVADEED-- 278 (462)
T ss_pred HHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCCCe----EEEEEecHHH--
Confidence 356667776667776666555 22332221222333334455668899999999999887521 4444455433
Q ss_pred HHHHHHhCCCcceecChhHHHHHHHhcCcC--CCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhh
Q 016358 92 FEEHFKCMPWLAVPFDETLHKKLRIRYRVD--RIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSK 169 (390)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (390)
...+++.+++. .+|++++++.+|...+.-. . .......+..+.......
T Consensus 279 -------------------~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~-----~-----~~~~~~~i~~fi~~~~~g 329 (462)
T TIGR01130 279 -------------------FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD-----Q-----EEFSSENLEAFVKDFLDG 329 (462)
T ss_pred -------------------hHHHHHHcCCCccCCceEEEEeCCcccccCCC-----c-----CCCCHHHHHHHHHHHhcC
Confidence 26788889987 6999999997762221110 0 012222332222111110
Q ss_pred hcccchhHHhhccCCc----eEEeCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEE
Q 016358 170 RQGGKLEQLLAIEGRD----YVLSRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 244 (390)
Q Consensus 170 ~~~~~~~~l~g~~~p~----f~l~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v 244 (390)
..... ....+.|. -...+.|.++.-.-. .++.|+|+||++||++|+.+.|.+.++++.++. ...++.++.+
T Consensus 330 ~~~~~---~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~i~~~~i 405 (462)
T TIGR01130 330 KLKPY---LKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD-AESDVVIAKM 405 (462)
T ss_pred CCCee---eccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc-CCCcEEEEEE
Confidence 00000 00111111 111333443332211 468999999999999999999999999999974 1236777777
Q ss_pred ecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHH
Q 016358 245 STDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324 (390)
Q Consensus 245 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~ 324 (390)
.++.+ .+.. +++.++|+++++.+++++. .....|... .+.+.
T Consensus 406 d~~~n------------------------~~~~-~~i~~~Pt~~~~~~~~~~~------~~~~~g~~~-------~~~l~ 447 (462)
T TIGR01130 406 DATAN------------------------DVPP-FEVEGFPTIKFVPAGKKSE------PVPYDGDRT-------LEDFS 447 (462)
T ss_pred ECCCC------------------------ccCC-CCccccCEEEEEeCCCCcC------ceEecCcCC-------HHHHH
Confidence 76643 2233 8899999999996555420 011234333 66676
Q ss_pred HHHHHhc
Q 016358 325 TALKKEG 331 (390)
Q Consensus 325 ~~~~~~~ 331 (390)
+.+.+.+
T Consensus 448 ~~l~~~~ 454 (462)
T TIGR01130 448 KFIAKHA 454 (462)
T ss_pred HHHHhcC
Confidence 6676644
No 148
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.36 E-value=2.8e-12 Score=100.43 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|++++|.||++||++|+.+.|.+.++++.+++. +.++.|++|.+.. ..++++|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~---------------------~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN---------------------KPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc---------------------HHHHHHcCC
Confidence 4789999999999999999999999999998754 6778887775433 689999999
Q ss_pred CCCCeEEEEcCCC
Q 016358 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|+++++++++
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999998665
No 149
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.36 E-value=6.4e-12 Score=97.53 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=55.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|.||++||++|+.+.|.|.+++++++. .+.++.+..++.+. ...+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~-----------------------~~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATA-----------------------YSSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECcc-----------------------CHhHHhhcC
Confidence 357899999999999999999999999999864 12345566565543 357888999
Q ss_pred ccccceEEEECCCCc
Q 016358 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|++++++ +|.
T Consensus 70 I~~~Pt~~l~~-~~~ 83 (104)
T cd03000 70 VRGYPTIKLLK-GDL 83 (104)
T ss_pred CccccEEEEEc-CCC
Confidence 99999999993 443
No 150
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.36 E-value=4.1e-12 Score=98.64 Aligned_cols=71 Identities=24% Similarity=0.434 Sum_probs=59.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|.|||+||++|+.+.|.+.++.+++. ..+.+..|+++. ...+++.|+|
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~-----------------------~~~~~~~~~i 71 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQK-----------------------YESLCQQANI 71 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCc-----------------------hHHHHHHcCC
Confidence 4799999999999999999999999999986 456777776664 4678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++..+|+.+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 72 RAYPTIRLYPGNASKYHS 89 (104)
T ss_pred CcccEEEEEcCCCCCceE
Confidence 999999999665465544
No 151
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.35 E-value=1e-11 Score=97.56 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=59.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.++.++++ ++.++-|..+. ...++++|+|
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~-----------------------~~~l~~~~~v 73 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEK-----------------------APFLVEKLNI 73 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEccc-----------------------CHHHHHHCCC
Confidence 4789999999999999999999999999885 35676666664 3679999999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68887766
No 152
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.35 E-value=4.8e-12 Score=99.07 Aligned_cols=72 Identities=15% Similarity=0.430 Sum_probs=59.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (390)
+|++++|.||++||++|+.+.|.+.++++.+++ .++.++.|.+|.+ ...+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGE----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCcc----------------------chhhHHhhc
Confidence 468999999999999999999999999999974 5688888888763 144554 59
Q ss_pred cccccceEEEECCCCcEE
Q 016358 280 NIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~ 297 (390)
+++++||+++++++++..
T Consensus 75 ~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 75 QLKSFPTILFFPKNSRQP 92 (109)
T ss_pred CCCcCCEEEEEcCCCCCc
Confidence 999999999998776543
No 153
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.35 E-value=3.4e-12 Score=98.63 Aligned_cols=71 Identities=23% Similarity=0.567 Sum_probs=58.0
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016358 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+++|+||++||++|+.+.|.+.+++++++. ...++.++.|..+. ...+++.|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQ-----------------------HRELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCC-----------------------ChhhHhhcCCCc
Confidence 499999999999999999999999999973 12357777766654 357888999999
Q ss_pred cceEEEECCCCcEEee
Q 016358 284 IPALVLIGPDGKTIST 299 (390)
Q Consensus 284 ~P~~~lid~~G~v~~~ 299 (390)
+|+++++ ++|+.+.+
T Consensus 74 ~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 74 YPTLLLF-KDGEKVDK 88 (102)
T ss_pred CCEEEEE-eCCCeeeE
Confidence 9999999 67776544
No 154
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.35 E-value=8.4e-12 Score=95.53 Aligned_cols=71 Identities=21% Similarity=0.444 Sum_probs=60.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++|+++||++||+.|+.+.|.+.++.+++. .++.++.++.|. ..++++.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~-----------------------~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDE-----------------------DQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCC-----------------------CHHHHHHCC
Confidence 35899999999999999999999999998886 456777777664 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 65 v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred CeeccEEEEE-ECCeEEEE
Confidence 9999999999 57888866
No 155
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.35 E-value=3.7e-12 Score=102.39 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=63.9
Q ss_pred cCC-CEEEEEEecCCChhhhhhHHHHH---HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016358 40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 40 ~~g-k~vll~F~~~~C~~C~~~~p~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
.+| |+|+|+||++||++|+.+.|.+. ++.+.+++. +.++.|++|.+.... . ++........++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 468 99999999999999999999885 566666543 777888877553211 0 111112347899
Q ss_pred HhcCcCCCCeEEEEcCC-Cccccc
Q 016358 116 IRYRVDRIPSLIPLASD-GTLIEE 138 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~-G~i~~~ 138 (390)
.+|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999988 787754
No 156
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.35 E-value=4.9e-12 Score=99.01 Aligned_cols=71 Identities=13% Similarity=0.370 Sum_probs=58.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hc
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RY 118 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 118 (390)
-+||+++|.||++||++|+.+.|.+.++++.+++.+ +.+..|++|.+. ..++. .|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~ 74 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEEL 74 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhc
Confidence 368999999999999999999999999999998644 677777666432 35665 59
Q ss_pred CcCCCCeEEEEcCCCc
Q 016358 119 RVDRIPSLIPLASDGT 134 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~ 134 (390)
++.++||++++++++.
T Consensus 75 ~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 75 QLKSFPTILFFPKNSR 90 (109)
T ss_pred CCCcCCEEEEEcCCCC
Confidence 9999999999986654
No 157
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.34 E-value=8e-12 Score=96.17 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=61.6
Q ss_pred CCcEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 201 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.|.+++|.||++| ||+|+.+.|.|.+++++|. +.+.++.|.+|.. ..++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence 4578999999997 9999999999999999997 4567777777753 689999
Q ss_pred ccccccceEEEECCCCcEEee
Q 016358 279 FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~ 299 (390)
|+|+++||++++ ++|+++.+
T Consensus 79 f~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEE-ECCEEEEE
Confidence 999999999999 78888776
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.34 E-value=1.1e-11 Score=97.65 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=59.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.+.++++++++ ....+.+..|+.+.+. ...+++.|+|
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence 37999999999999999999999999999864 2234666666554332 4678999999
Q ss_pred cccceEEEECCCCcEEeeCc
Q 016358 282 KGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g 301 (390)
+++|+++++ ++|......|
T Consensus 77 ~~~Pt~~lf-~~~~~~~~~~ 95 (114)
T cd02992 77 TGYPTLRYF-PPFSKEATDG 95 (114)
T ss_pred CCCCEEEEE-CCCCccCCCC
Confidence 999999999 4444444444
No 159
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=2.2e-12 Score=102.01 Aligned_cols=79 Identities=20% Similarity=0.497 Sum_probs=61.2
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+..+..+||+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+.+ ..
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~ 66 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PK 66 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------ch
Confidence 4555567999999999999999999999999977755432 3477778775542 23
Q ss_pred HHhcCcCC--CCeEEEEcCCCccccc
Q 016358 115 RIRYRVDR--IPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~--~P~~~~~d~~G~i~~~ 138 (390)
.+.|++.+ +|++++++++|+++.+
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchh
Confidence 35677765 9999999999998754
No 160
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.33 E-value=9.5e-12 Score=98.04 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=57.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|+||++||++|+.+.|.+.++++++++....+.+..|+++.+.. ..++++|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---------------------~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---------------------VALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---------------------HHHHHhCCCC
Confidence 4799999999999999999999999999997643235555554443332 6889999999
Q ss_pred CCCeEEEEcCCCccc
Q 016358 122 RIPSLIPLASDGTLI 136 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~ 136 (390)
++|+++++. +|...
T Consensus 78 ~~Pt~~lf~-~~~~~ 91 (114)
T cd02992 78 GYPTLRYFP-PFSKE 91 (114)
T ss_pred CCCEEEEEC-CCCcc
Confidence 999999996 55433
No 161
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.32 E-value=4.6e-12 Score=107.66 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=65.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
..++.+.+|+ ++|++++||++||.|||+||++|. .++.|++++++|++.| ++|++++++ .+.+++++|+
T Consensus 7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~ 83 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYC 83 (183)
T ss_pred CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHH
Confidence 3568899999 999999999999999999999996 6999999999999887 999999986 3556788888
Q ss_pred H-hCCCcceec
Q 016358 97 K-CMPWLAVPF 106 (390)
Q Consensus 97 ~-~~~~~~~~~ 106 (390)
+ +++ +.+|+
T Consensus 84 ~~~~g-~~Fpv 93 (183)
T PRK10606 84 RTTWG-VTFPM 93 (183)
T ss_pred HHccC-CCcee
Confidence 7 444 33444
No 162
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.32 E-value=1.8e-11 Score=94.53 Aligned_cols=86 Identities=27% Similarity=0.677 Sum_probs=67.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
++++||+||++||++|+.+.|.|.++.+++. .++.++.|..+. ...++++|+|
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~-----------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDE-----------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhc-----------------------cchhhhccCC
Confidence 5899999999999999999999999999987 366777776664 4789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016358 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++|+++++ .+|+.+.+ ..|... .+.|.+.+++
T Consensus 70 ~~~Pt~~~~-~~g~~~~~-------~~g~~~-------~~~l~~~i~~ 102 (103)
T PF00085_consen 70 KSVPTIIFF-KNGKEVKR-------YNGPRN-------AESLIEFIEK 102 (103)
T ss_dssp SSSSEEEEE-ETTEEEEE-------EESSSS-------HHHHHHHHHH
T ss_pred CCCCEEEEE-ECCcEEEE-------EECCCC-------HHHHHHHHHc
Confidence 999999999 56655544 455544 5556555543
No 163
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.32 E-value=1.3e-11 Score=96.44 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=57.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccC--CceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTAN--HCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+++++|.|||+||++|+.+.|.+.++++.+++... ..+.+..|.+|. +..++++|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----------------------~~~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----------------------ESDIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----------------------CHHHHHhC
Confidence 57899999999999999999999999998864111 246666666664 36789999
Q ss_pred cccccceEEEECCCCcE
Q 016358 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|+++|+++++ ++|++
T Consensus 75 ~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 75 RINKYPTLKLF-RNGMM 90 (108)
T ss_pred CCCcCCEEEEE-eCCcC
Confidence 99999999999 67774
No 164
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.31 E-value=5.5e-12 Score=99.27 Aligned_cols=96 Identities=26% Similarity=0.459 Sum_probs=66.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+||++++.||++||++|+.+.+.+.+..+-......++.++.++++.+.+...++....+. +.....+.++++.||
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 36899999999999999999999988755432221123778888888766544444443221 222345678999999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016358 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999997743
No 165
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.31 E-value=5.6e-12 Score=97.28 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=58.0
Q ss_pred cCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016358 30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.+++. +.. -++|+ ++|.||++||++|+.+.|.|.++++.++..+ +.+..| |.+.+
T Consensus 5 ~l~~~~f~~-~~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~v--d~~~~------------------ 60 (101)
T cd02994 5 ELTDSNWTL-VLEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKV--DVTQE------------------ 60 (101)
T ss_pred EcChhhHHH-HhCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEE--EccCC------------------
Confidence 34444 442 23566 6899999999999999999999999775433 445544 44433
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016358 109 TLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..++++|++.++||++++ ++|++
T Consensus 61 ---~~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 61 ---PGLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred ---HhHHHHcCCcccCEEEEe-CCCCE
Confidence 578899999999999998 57864
No 166
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.31 E-value=3.5e-12 Score=115.61 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=69.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
..++++.|+++||+||++||++|+.++|.|++++++++ ++|++|++|.+.. ..+|.. ..+..+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~~l 221 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDAGQ 221 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCHHH
Confidence 78889999999999999999999999999999999873 6799999987543 112322 123567
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+++|||.++|++++++++|..+
T Consensus 222 a~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 222 AQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred HHHcCCCcCCeEEEEECCCCEE
Confidence 8999999999999999855444
No 167
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.31 E-value=1.3e-11 Score=97.15 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=58.5
Q ss_pred cEEEEEEccCCCcc--cH--hhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 203 KTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.++|++||++||+| |+ .+.|.+.+++.++-+ ..++.|+.|++|. +..++++
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~-----------------------~~~La~~ 82 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKK-----------------------DAKVAKK 82 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCC-----------------------CHHHHHH
Confidence 68999999999988 99 788899999998821 1567888888775 4789999
Q ss_pred ccccccceEEEECCCCcEEe
Q 016358 279 FNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~ 298 (390)
|||.++||++++ ++|+++.
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred cCCccccEEEEE-ECCEEEE
Confidence 999999999999 6777654
No 168
>PRK09381 trxA thioredoxin; Provisional
Probab=99.31 E-value=7.1e-12 Score=98.16 Aligned_cols=85 Identities=22% Similarity=0.475 Sum_probs=65.8
Q ss_pred ceeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~-~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+...+++ +...-. .+++++|+||++||++|+.+.|.|+++++++.+. +.+..+++|..
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~--------------- 64 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN--------------- 64 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC---------------
Confidence 334555555 432222 4789999999999999999999999999998764 66777776643
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016358 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|++++++ +|+++.
T Consensus 65 --------~~~~~~~~v~~~Pt~~~~~-~G~~~~ 89 (109)
T PRK09381 65 --------PGTAPKYGIRGIPTLLLFK-NGEVAA 89 (109)
T ss_pred --------hhHHHhCCCCcCCEEEEEe-CCeEEE
Confidence 4677899999999999994 888764
No 169
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.31 E-value=2e-11 Score=98.40 Aligned_cols=70 Identities=16% Similarity=0.331 Sum_probs=58.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+|||+||+||+.+.|.|.+++++++ +.+.|+-|.+|. .+++++.|+|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe-----------------------~~dla~~y~I 75 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITE-----------------------VPDFNTMYEL 75 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCC-----------------------CHHHHHHcCc
Confidence 4899999999999999999999999999986 346677777775 4789999999
Q ss_pred cccceEE-EECCCCc-EEee
Q 016358 282 KGIPALV-LIGPDGK-TIST 299 (390)
Q Consensus 282 ~~~P~~~-lid~~G~-v~~~ 299 (390)
.+.|+++ ++ ++|+ .+.+
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEE
Confidence 9887777 66 7777 4444
No 170
>PTZ00102 disulphide isomerase; Provisional
Probab=99.31 E-value=3.7e-11 Score=119.12 Aligned_cols=84 Identities=18% Similarity=0.344 Sum_probs=65.1
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016358 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+.+++.. +...-.+++.++|.||++||++|+++.|.+.++++.+++.+ ..+.++.+|++.+
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~--~~i~~~~vd~~~~---------------- 95 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK--SEIVLASVDATEE---------------- 95 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC--CcEEEEEEECCCC----------------
Confidence 3444444 43333468899999999999999999999999999887654 3466666676654
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016358 107 DETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|++.++|++++++.++.
T Consensus 96 -----~~l~~~~~i~~~Pt~~~~~~g~~ 118 (477)
T PTZ00102 96 -----MELAQEFGVRGYPTIKFFNKGNP 118 (477)
T ss_pred -----HHHHHhcCCCcccEEEEEECCce
Confidence 78999999999999999975443
No 171
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.31 E-value=1.1e-11 Score=95.64 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=58.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.+.++++++.++. ..++.++.+..+. ...+++.|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~-----------------------~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATA-----------------------EKDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccc-----------------------hHHHHHhCC
Confidence 578999999999999999999999999999874 1246666666553 467889999
Q ss_pred ccccceEEEECCCCc
Q 016358 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|+++++++++.
T Consensus 67 i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPKGKK 81 (102)
T ss_pred CCcCCEEEEecCCCc
Confidence 999999999987776
No 172
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.31 E-value=1.1e-11 Score=101.94 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.++++++++++.+ +.++.|++|.. ..++++|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 56899999999999999999999999999987544 66666666543 578888898
Q ss_pred CC------CCeEEEEcCCCccccccc
Q 016358 121 DR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 121 ~~------~P~~~~~d~~G~i~~~~~ 140 (390)
.+ +||++++. +|+.+.+..
T Consensus 101 ~~~~~v~~~PT~ilf~-~Gk~v~r~~ 125 (152)
T cd02962 101 STSPLSKQLPTIILFQ-GGKEVARRP 125 (152)
T ss_pred eecCCcCCCCEEEEEE-CCEEEEEEe
Confidence 87 99999996 898876544
No 173
>PRK10996 thioredoxin 2; Provisional
Probab=99.30 E-value=5e-12 Score=103.31 Aligned_cols=71 Identities=20% Similarity=0.615 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.| |.+.. ..++++|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~v--d~~~~---------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKV--NTEAE---------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEE--eCCCC---------------------HHHHHhcCC
Confidence 5899999999999999999999999999987654 444444 44432 678999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016358 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|++++++ +|+++.+
T Consensus 105 ~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred CccCEEEEEE-CCEEEEE
Confidence 9999999996 8887643
No 174
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.30 E-value=5.4e-12 Score=97.47 Aligned_cols=69 Identities=23% Similarity=0.522 Sum_probs=55.1
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016358 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+++|.||++||++|+.+.|.+.++++++++....+.++.| |.+.+ ..++++|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~v--d~~~~---------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKV--DCTQH---------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEE--ECCCC---------------------hhhHhhcCCCcC
Confidence 4999999999999999999999999999762222555554 44433 578899999999
Q ss_pred CeEEEEcCCCccc
Q 016358 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|+++++ ++|+.+
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 477654
No 175
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.30 E-value=8.2e-12 Score=96.92 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=55.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|.||++||++|+.+.|.|.++++.+++.+..+.+..+ |.+.. ..++++|++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~v--d~~~~---------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL--DATAY---------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEE--ECccC---------------------HhHHhhcCC
Confidence 4679999999999999999999999999999765433444444 43332 578899999
Q ss_pred CCCCeEEEEcCCC
Q 016358 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|++++++ +|
T Consensus 71 ~~~Pt~~l~~-~~ 82 (104)
T cd03000 71 RGYPTIKLLK-GD 82 (104)
T ss_pred ccccEEEEEc-CC
Confidence 9999999995 44
No 176
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.29 E-value=7.2e-11 Score=100.25 Aligned_cols=119 Identities=20% Similarity=0.398 Sum_probs=93.0
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHHH
Q 016358 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFD 254 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~ 254 (390)
....++|++ +.+|+.+++++++||++||+|.-+.||. |...+..|.++.+++.+ .+.++++++|++|++ .+..+
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHHH
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHHH
Confidence 455788999 9999999999999999999999999987 99999999999999986 356899999999975 35566
Q ss_pred HhhhcC--CcccccCCchHHHHHHHHccccc----------------cceEEEECCCCcEEee
Q 016358 255 LNHSIM--PWLAIPYEDRARQDLCRIFNIKG----------------IPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~~----------------~P~~~lid~~G~v~~~ 299 (390)
++.+.+ .|..+....+....+++.|++.. ...++||||+|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 666533 35555555555678888888631 2358999999999876
No 177
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.28 E-value=2.6e-11 Score=92.80 Aligned_cols=70 Identities=20% Similarity=0.453 Sum_probs=58.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.++.+++. .++.++.+..+. ...+++.|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence 5899999999999999999999999998863 455565554432 3678899999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ .+|+++.+
T Consensus 67 ~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 58888776
No 178
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.28 E-value=2.3e-11 Score=94.25 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=58.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.++.+.++. ...+.++.+..+.+. ...+++.|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence 357899999999999999999999999998863 134555555555321 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 73 i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 73 VKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred CccccEEEEE-eCCCeeEE
Confidence 9999998888 57876655
No 179
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9e-12 Score=110.21 Aligned_cols=71 Identities=24% Similarity=0.536 Sum_probs=60.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+-+||||+||+|||++|+..+|.|+++..+++.. ++.+.+|+|.+ ..++.+||
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-----f~LakvN~D~~---------------------p~vAaqfg 94 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-----FKLAKVNCDAE---------------------PMVAAQFG 94 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-----eEEEEecCCcc---------------------hhHHHHhC
Confidence 34579999999999999999999999999999886 45555554443 68999999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016358 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
|+++|++++|. +|+.+.
T Consensus 95 iqsIPtV~af~-dGqpVd 111 (304)
T COG3118 95 VQSIPTVYAFK-DGQPVD 111 (304)
T ss_pred cCcCCeEEEee-CCcCcc
Confidence 99999999994 998873
No 180
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.27 E-value=2.5e-11 Score=106.25 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=57.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+|||+||++|+.+.|.+++++++++ ..+.+..|..+. +..++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence 4789999999999999999999999999987 345555554443 3678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||+++++ +|+++..
T Consensus 105 ~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred CcCCEEEEEE-CCEEEEe
Confidence 9999999996 7877654
No 181
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.26 E-value=2e-11 Score=93.37 Aligned_cols=70 Identities=23% Similarity=0.585 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.|.|.++++++.. .+.++.+|.+.. ..++++|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-----~i~~~~vd~~~~---------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-----SVLFLSIEAEEL---------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-----ceEEEEEccccC---------------------HHHHHhcCCc
Confidence 79999999999999999999999999998732 255566665443 6789999999
Q ss_pred CCCeEEEEcCCCccccc
Q 016358 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
++|++++++ +|+++.+
T Consensus 68 ~~Pt~~~~~-~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFFR-NGTIVDR 83 (97)
T ss_pred cccEEEEEE-CCEEEEE
Confidence 999999996 8877644
No 182
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.26 E-value=1.7e-11 Score=94.72 Aligned_cols=70 Identities=36% Similarity=0.750 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.++++++++ + +.++.+|.+.. ..++++|++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~----v~~~~vd~~~~---------------------~~l~~~~~v 69 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N----VKFAKVDCDEN---------------------KELCKKYGV 69 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T----SEEEEEETTTS---------------------HHHHHHTTC
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-c----cccchhhhhcc---------------------chhhhccCC
Confidence 479999999999999999999999999999987 3 45555554443 689999999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016358 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++. +|+...
T Consensus 70 ~~~Pt~~~~~-~g~~~~ 85 (103)
T PF00085_consen 70 KSVPTIIFFK-NGKEVK 85 (103)
T ss_dssp SSSSEEEEEE-TTEEEE
T ss_pred CCCCEEEEEE-CCcEEE
Confidence 9999999996 776654
No 183
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.25 E-value=6.7e-11 Score=90.97 Aligned_cols=70 Identities=29% Similarity=0.591 Sum_probs=59.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.++.+++. .++.++.|..+.. ..+.+.|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999998886 4577888777653 578899999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 67 ~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 67877655
No 184
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.25 E-value=1.8e-11 Score=98.67 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=56.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++|+|+|||+||+||+.+.|.|.++++++++. +.++-|++| +. .++++.|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVD--e~---------------------~dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDIT--EV---------------------PDFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECC--CC---------------------HHHHHHcCc
Confidence 6789999999999999999999999999998775 455666665 32 689999999
Q ss_pred CCCCeEE-EEcCCCcc
Q 016358 121 DRIPSLI-PLASDGTL 135 (390)
Q Consensus 121 ~~~P~~~-~~d~~G~i 135 (390)
.+.|+++ ++ ++|++
T Consensus 76 ~~~~t~~~ff-k~g~~ 90 (142)
T PLN00410 76 YDPCTVMFFF-RNKHI 90 (142)
T ss_pred cCCCcEEEEE-ECCeE
Confidence 9877766 66 57763
No 185
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.25 E-value=1.7e-11 Score=94.31 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=60.1
Q ss_pred cCCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016358 40 CGGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 40 ~~gk~vll~F~~~~--C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
..|.+++|+||++| ||+|+.+.|.|.++++++.+. +.++-|++| .+ ..++.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid--~~---------------------~~la~~ 78 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRA--DE---------------------QALAAR 78 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECC--CC---------------------HHHHHH
Confidence 45788999999997 999999999999999999765 445555554 33 589999
Q ss_pred cCcCCCCeEEEEcCCCccccc
Q 016358 118 YRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|+|+++||++++. +|+++.+
T Consensus 79 f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEEE-CCEEEEE
Confidence 9999999999996 8887754
No 186
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.24 E-value=2.2e-11 Score=94.38 Aligned_cols=74 Identities=22% Similarity=0.503 Sum_probs=57.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|.||++||++|+.+.|.+.++++.+++.+ .+.++.++++.+.. ..++++|+
T Consensus 15 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~---------------------~~~~~~~~ 72 (104)
T cd02997 15 KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH---------------------DALKEEYN 72 (104)
T ss_pred hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc---------------------HHHHHhCC
Confidence 357799999999999999999999999999987532 24444444443212 68899999
Q ss_pred cCCCCeEEEEcCCCccc
Q 016358 120 VDRIPSLIPLASDGTLI 136 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~ 136 (390)
+.++|+++++. +|+++
T Consensus 73 i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 73 VKGFPTFKYFE-NGKFV 88 (104)
T ss_pred CccccEEEEEe-CCCee
Confidence 99999999885 77754
No 187
>PTZ00051 thioredoxin; Provisional
Probab=99.24 E-value=2.3e-11 Score=93.26 Aligned_cols=70 Identities=20% Similarity=0.537 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++++++.+ +.++.+|.+.. ..++++|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~vd~~~~---------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK------MVFVKVDVDEL---------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC------cEEEEEECcch---------------------HHHHHHCCC
Confidence 578999999999999999999999999987643 44444454433 678999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016358 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999999988 58887744
No 188
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.23 E-value=4.2e-11 Score=101.48 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=56.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+||++||++|+.+.|.|.+++++|.. +.++-|.++ . . .++..|+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-----vkF~kVd~d--~---------------------~-~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-----VKFCKIRAS--A---------------------T-GASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----eEEEEEecc--c---------------------h-hhHHhCCC
Confidence 35899999999999999999999999999853 455555444 2 2 68889999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 134 ~~vPTllly-k~G~~v~~ 150 (175)
T cd02987 134 DALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 78888866
No 189
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.23 E-value=1.1e-10 Score=99.14 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=94.3
Q ss_pred ccCcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC---hhHHHHHH
Q 016358 22 SEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---ENGFEEHF 96 (390)
Q Consensus 22 ~~~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~ 96 (390)
....++|.|.+|+ +++++++||+++|+|.-+.|| .|...+..|.++.+++.+.+.++++++|++|.. .+.+++|.
T Consensus 31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3456779999999 999999999999999999997 899999999999999988777799999999964 45688888
Q ss_pred HhCC--CcceecChhHHHHHHHhcCcC----------------CCCeEEEEcCCCcccc
Q 016358 97 KCMP--WLAVPFDETLHKKLRIRYRVD----------------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~l~~~~~v~----------------~~P~~~~~d~~G~i~~ 137 (390)
+..+ |..+.+..+....+++.|++. +...++++|++|+++.
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 8554 566666666778888888753 4468899999998874
No 190
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.23 E-value=2.5e-11 Score=95.25 Aligned_cols=81 Identities=17% Similarity=0.395 Sum_probs=62.6
Q ss_pred cCCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016358 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 40 ~~gk~vll~F~~-------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
.+|++|+|+||| +||++|+.+.|.+.++.++++++ +.++.|++|.... -.+...
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------------w~d~~~ 79 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------------WRDPNN 79 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------------ccCcch
Confidence 358999999999 99999999999999999998743 6677777764320 011236
Q ss_pred HHHHhcCcC-CCCeEEEEcCCCcccccc
Q 016358 113 KLRIRYRVD-RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 113 ~l~~~~~v~-~~P~~~~~d~~G~i~~~~ 139 (390)
.++..|++. ++||+++++..++++..+
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecchh
Confidence 888999998 999999997555555443
No 191
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.23 E-value=3.4e-11 Score=92.17 Aligned_cols=70 Identities=20% Similarity=0.459 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++++||++||++|+.+.|.+.++++++++. +.++.|++| .. .++++++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d--~~---------------------~~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDID--ED---------------------QEIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECC--CC---------------------HHHHHHCCC
Confidence 5799999999999999999999999999988753 555555544 32 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016358 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|++++++ +|+++.
T Consensus 66 ~~vPt~~i~~-~g~~v~ 81 (97)
T cd02949 66 MGTPTVQFFK-DKELVK 81 (97)
T ss_pred eeccEEEEEE-CCeEEE
Confidence 9999999996 787763
No 192
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.23 E-value=2.3e-11 Score=95.50 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=62.7
Q ss_pred CCcEEEEEEcc-------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016358 201 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
+|++|+|+||| +||++|+.+.|.|.++.++++ .++.++.|.+|... ...+.+.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence 46899999999 999999999999999999986 45788888877532 1112246
Q ss_pred HHHHHcccc-ccceEEEECCCCcEEee
Q 016358 274 DLCRIFNIK-GIPALVLIGPDGKTIST 299 (390)
Q Consensus 274 ~l~~~~~v~-~~P~~~lid~~G~v~~~ 299 (390)
.++..|+|. ++||++++...++++..
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecch
Confidence 888999998 99999999665555543
No 193
>PTZ00051 thioredoxin; Provisional
Probab=99.23 E-value=3.3e-11 Score=92.37 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=57.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+. ...++++|++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~v 69 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKENI 69 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCCC
Confidence 5789999999999999999999999998764 35566555543 3678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 78988876
No 194
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=2.5e-10 Score=90.62 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+|+|+|+++||++|+.+.+.. .++.+.+. .++.+|.|..+...+ ..+.+ ......
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~~-~~~~~--------------~~~~~~ 74 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERPD-VDKIY--------------MNAAQA 74 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCcH-HHHHH--------------HHHHHH
Confidence 569999999999999999987632 34555544 345555555443221 11110 122333
Q ss_pred HccccccceEEEECCCCcEEeeCc
Q 016358 278 IFNIKGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~~g 301 (390)
.|++.++|+++++|++|++++..+
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEeeee
Confidence 679999999999999999998854
No 195
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.22 E-value=9.7e-11 Score=90.58 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=55.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.+++++++ ..+.++.+..+. +..++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~-----------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADV-----------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcc-----------------------hHHHHHHCCC
Confidence 4679999999999999999999999999986 456777776654 4678899999
Q ss_pred cccceEEEECCC
Q 016358 282 KGIPALVLIGPD 293 (390)
Q Consensus 282 ~~~P~~~lid~~ 293 (390)
+++|++++++.+
T Consensus 71 ~~~P~~~~~~~~ 82 (103)
T cd03001 71 RGFPTIKVFGAG 82 (103)
T ss_pred CccCEEEEECCC
Confidence 999999999644
No 196
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.22 E-value=2.6e-11 Score=95.33 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++|+|+||++||++|+.+.|.|.++++++.+ +.++-|++| +. ..++++|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~--~~---------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAE--KA---------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcc--cC---------------------HHHHHHCCC
Confidence 568999999999999999999999999998753 445555444 43 579999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016358 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+.+.+
T Consensus 74 ~~vPt~l~fk-~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILFK-NGKTVDR 90 (113)
T ss_pred ccCCEEEEEE-CCEEEEE
Confidence 9999999996 8887754
No 197
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.22 E-value=3.1e-11 Score=95.10 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=56.1
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.|.|+++++++.+ +.++ .+|.+. . .++++|++.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~--~vd~~~---------------------~-~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFV--KINAEK---------------------A-FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEE--EEEchh---------------------h-HHHHhcCCC
Confidence 58999999999999999999999999998853 3344 444332 2 788999999
Q ss_pred CCCeEEEEcCCCccccc
Q 016358 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
++|+++++. +|+.+.+
T Consensus 76 ~~Pt~~~f~-~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVYK-NGELIDN 91 (113)
T ss_pred cCCEEEEEE-CCEEEEE
Confidence 999999995 8888754
No 198
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.21 E-value=3.9e-11 Score=92.52 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|.||++||++|+.+.+.|.++++.++..+ .+.++.+|.+.. ..++++|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~---------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP---DIVLAKVDATAE---------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC---ceEEEEEEccch---------------------HHHHHhCCC
Confidence 78999999999999999999999999999987642 255555555543 688999999
Q ss_pred CCCCeEEEEcCCCc
Q 016358 121 DRIPSLIPLASDGT 134 (390)
Q Consensus 121 ~~~P~~~~~d~~G~ 134 (390)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999986654
No 199
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=4.1e-11 Score=104.93 Aligned_cols=69 Identities=20% Similarity=0.487 Sum_probs=57.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.++++++++++. +. +..+|.+++ ..++++|+|
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~--~~~VD~~~~---------------------~~l~~~~~I 104 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VN--VADLDATRA---------------------LNLAKRFAI 104 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eE--EEEecCccc---------------------HHHHHHcCC
Confidence 3689999999999999999999999999998754 44 445555543 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
+++||+++++ +|+.+
T Consensus 105 ~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMY 119 (224)
T ss_pred CcCCEEEEEE-CCEEE
Confidence 9999999997 78654
No 200
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.21 E-value=7.9e-11 Score=91.33 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=58.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|.||++||++|+.+.|.+.++++.++. ..++.++.+..+.. ...++++|+|
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence 46899999999999999999999999999862 24566666666541 2678999999
Q ss_pred cccceEEEECCCCcEE
Q 016358 282 KGIPALVLIGPDGKTI 297 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~ 297 (390)
.++|++++++++|+..
T Consensus 74 ~~~P~~~~~~~~~~~~ 89 (105)
T cd02998 74 SGFPTLKFFPKGSTEP 89 (105)
T ss_pred CCcCEEEEEeCCCCCc
Confidence 9999999997776443
No 201
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.20 E-value=2.3e-11 Score=95.79 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCEEEEEEecCCChh--hh--hhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 42 GKTICLFFSANWCRP--CK--TFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 42 gk~vll~F~~~~C~~--C~--~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
..++|++||++||+| |+ .+.|.+.+++.++- ..+ +.++.+|.+++ ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~----v~~~kVD~d~~---------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG----IGFGLVDSKKD---------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC----CEEEEEeCCCC---------------------HHHHH
Confidence 469999999999987 99 88888999988872 223 44445554443 69999
Q ss_pred hcCcCCCCeEEEEcCCCccc
Q 016358 117 RYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~ 136 (390)
+|+|+++||+++|. +|+++
T Consensus 82 ~~~I~~iPTl~lfk-~G~~v 100 (120)
T cd03065 82 KLGLDEEDSIYVFK-DDEVI 100 (120)
T ss_pred HcCCccccEEEEEE-CCEEE
Confidence 99999999999996 88865
No 202
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.20 E-value=5.8e-11 Score=92.11 Aligned_cols=70 Identities=30% Similarity=0.567 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh-hHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+++++|.||++||++|+.+.|.+.++++.++.. . .+.++.+|.+. . ..++++|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~--~~~~~~id~~~~~---------------------~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-D--DVVIAKVDADEAN---------------------KDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-C--CEEEEEEECCCcc---------------------hhhHHhCC
Confidence 4679999999999999999999999999998732 1 24555555444 2 68999999
Q ss_pred cCCCCeEEEEcCCCc
Q 016358 120 VDRIPSLIPLASDGT 134 (390)
Q Consensus 120 v~~~P~~~~~d~~G~ 134 (390)
+.++|++++++++|+
T Consensus 73 i~~~P~~~~~~~~~~ 87 (105)
T cd02998 73 VSGFPTLKFFPKGST 87 (105)
T ss_pred CCCcCEEEEEeCCCC
Confidence 999999999986653
No 203
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.19 E-value=1.1e-09 Score=108.10 Aligned_cols=72 Identities=26% Similarity=0.518 Sum_probs=59.6
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|.|||+||++|+.+.|.+.++++.+++.+.+ +.++.+|++.+ ..++++|+
T Consensus 16 ~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~--v~~~~vd~~~~---------------------~~l~~~~~ 72 (462)
T TIGR01130 16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPP--IKLAKVDATEE---------------------KDLAQKYG 72 (462)
T ss_pred hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCc--eEEEEEECCCc---------------------HHHHHhCC
Confidence 36789999999999999999999999999998765433 55566665554 68999999
Q ss_pred cCCCCeEEEEcCCCcc
Q 016358 120 VDRIPSLIPLASDGTL 135 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i 135 (390)
+.++||++++. +|+.
T Consensus 73 i~~~Pt~~~~~-~g~~ 87 (462)
T TIGR01130 73 VSGYPTLKIFR-NGED 87 (462)
T ss_pred CccccEEEEEe-CCcc
Confidence 99999999996 6654
No 204
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.17 E-value=7.7e-11 Score=90.37 Aligned_cols=72 Identities=25% Similarity=0.498 Sum_probs=59.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|.||++||++|+.+.|.+.++++.++ ...++.++.++.+. ...+++.|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~-----------------------~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTA-----------------------NNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccc-----------------------hHHHHHhCC
Confidence 34689999999999999999999999999985 12567777776654 368899999
Q ss_pred ccccceEEEECCCCcEE
Q 016358 281 IKGIPALVLIGPDGKTI 297 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~ 297 (390)
|.++|++++++++|+.+
T Consensus 69 i~~~Pt~~~~~~~~~~~ 85 (101)
T cd02961 69 VRGYPTIKLFPNGSKEP 85 (101)
T ss_pred CCCCCEEEEEcCCCccc
Confidence 99999999998776433
No 205
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.16 E-value=1.4e-10 Score=96.59 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=88.3
Q ss_pred eeecCC---Cc-cccCc-cCCCEEEEEEe-cCCChhhhhh-HHHHHHHHHHHhhCCCcE-EEEEEecCCChhHHHHHHHh
Q 016358 27 FLLSRQ---GK-VPLSS-CGGKTICLFFS-ANWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKC 98 (390)
Q Consensus 27 ~l~~~~---g~-~~l~~-~~gk~vll~F~-~~~C~~C~~~-~p~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~ 98 (390)
.|.+.+ |+ ++|++ ++||+++|+|| +.||+.|..+ ++.+.+.++++.+.| . +|++|+.|. ..+.++|.++
T Consensus 9 ~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~-~~~~~~~~~~ 85 (155)
T cd03013 9 TLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVND-PFVMKAWGKA 85 (155)
T ss_pred EeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCC-HHHHHHHHHh
Confidence 366664 88 99999 58887777666 8899999999 999999999999877 7 599999984 4457888888
Q ss_pred CCC-cceecChhHHHHHHHhcCcC------C-----CCeEEEEcCCCccccccc
Q 016358 99 MPW-LAVPFDETLHKKLRIRYRVD------R-----IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 99 ~~~-~~~~~~~~~~~~l~~~~~v~------~-----~P~~~~~d~~G~i~~~~~ 140 (390)
+.. ..+|+..|.+.++++.||+. + ....+++| +|+|++...
T Consensus 86 ~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 86 LGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred hCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 775 47888788889999999983 1 35678898 798886443
No 206
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.15 E-value=1.3e-10 Score=89.85 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.|.++++++... +.+..++++ .+ ..++++|++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~--~~---------------------~~~~~~~~i 70 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDAD--VH---------------------QSLAQQYGV 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECc--ch---------------------HHHHHHCCC
Confidence 3677999999999999999999999999998754 555555544 32 578899999
Q ss_pred CCCCeEEEEcCCC
Q 016358 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
+++|++++++ +|
T Consensus 71 ~~~P~~~~~~-~~ 82 (103)
T cd03001 71 RGFPTIKVFG-AG 82 (103)
T ss_pred CccCEEEEEC-CC
Confidence 9999999997 55
No 207
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.14 E-value=1.4e-10 Score=88.82 Aligned_cols=69 Identities=25% Similarity=0.459 Sum_probs=55.7
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.++++++|.||++||++|+.+.|.+.++++.++ ..+ +.++.+ |.+.+ ..++++|
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~v--~~~~~---------------------~~~~~~~ 67 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGK--VVVAKV--DCTAN---------------------NDLCSEY 67 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCc--eEEEEe--eccch---------------------HHHHHhC
Confidence 356699999999999999999999999999985 222 444444 44333 6899999
Q ss_pred CcCCCCeEEEEcCCC
Q 016358 119 RVDRIPSLIPLASDG 133 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G 133 (390)
++.++|++++++++|
T Consensus 68 ~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 68 GVRGYPTIKLFPNGS 82 (101)
T ss_pred CCCCCCEEEEEcCCC
Confidence 999999999998665
No 208
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.13 E-value=2.4e-10 Score=90.94 Aligned_cols=81 Identities=15% Similarity=0.356 Sum_probs=58.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC-
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR- 119 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 119 (390)
.|+.++|+|+++|||+|+.+.|.|.++.++.+ ..++.|++|.+.. .... ......++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~-----------~~~~-~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGS-----------FEMS-SLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccC-----------cCcc-cHHHHHHHHHHcCC
Confidence 57889999999999999999999999998722 5699999985431 0000 0011235555554
Q ss_pred ---cCCCCeEEEEcCCCcccccc
Q 016358 120 ---VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 120 ---v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.++||++++. +|+.+.+.
T Consensus 85 ~~~i~~~PT~v~~k-~Gk~v~~~ 106 (122)
T TIGR01295 85 PTSFMGTPTFVHIT-DGKQVSVR 106 (122)
T ss_pred cccCCCCCEEEEEe-CCeEEEEE
Confidence 56799999995 99877543
No 209
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.12 E-value=2.1e-10 Score=91.04 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=57.3
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChh-HHHHHHHhCCCcceecChhH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (390)
+..+.-++|+|+|+|+++||++|+.+.+.. .++.+.+.++ ++.|.+|.++. ..... .
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~-----fv~VkvD~~~~~~~~~~--------------~ 68 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN-----FVPIKVDREERPDVDKI--------------Y 68 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC-----EEEEEEeCCcCcHHHHH--------------H
Confidence 444556799999999999999999987633 3455555443 45555554332 11110 0
Q ss_pred HHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 111 HKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.......|++.++|++++++++|++++..
T Consensus 69 ~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 69 MNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 11222367999999999999999998765
No 210
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.11 E-value=2.3e-10 Score=87.95 Aligned_cols=69 Identities=25% Similarity=0.606 Sum_probs=56.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++.+++.+. +.++.|+.+.+ ..++++|++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 3679999999999999999999999999888654 56666655532 578899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++++ +|+++
T Consensus 67 ~~~P~~~~~~-~g~~~ 81 (101)
T TIGR01068 67 RSIPTLLLFK-NGKEV 81 (101)
T ss_pred CcCCEEEEEe-CCcEe
Confidence 9999999994 77654
No 211
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.10 E-value=4.1e-10 Score=96.68 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=54.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||.||++||++|+.+.|.|.+++.+|.. +.++-|.++. ....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-----vkFvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-----TKFVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----CEEEEEEhHH--------------------------hHhhCCC
Confidence 46899999999999999999999999999863 4555554431 2468999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 151 ~~lPTlliy-k~G~~v~~ 167 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQ 167 (192)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 88888876
No 212
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.10 E-value=2.5e-10 Score=88.37 Aligned_cols=68 Identities=22% Similarity=0.522 Sum_probs=53.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++++.+++. . .+.++.+|.+. ..++..+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~--~~~~~~id~~~----------------------~~~~~~~~~ 71 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-D--NVVIAKMDATA----------------------NDVPSEFVV 71 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-C--CEEEEEEeCcc----------------------hhhhhhccC
Confidence 4689999999999999999999999999998762 1 25555555444 246778899
Q ss_pred CCCCeEEEEcCCC
Q 016358 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|+++++.+++
T Consensus 72 ~~~Pt~~~~~~~~ 84 (104)
T cd02995 72 DGFPTILFFPAGD 84 (104)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999996443
No 213
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.10 E-value=2.5e-10 Score=109.90 Aligned_cols=70 Identities=16% Similarity=0.363 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++|||+|||+||++|+.+.|.|+++++++++.+ +.++.|++|.+.. ...+++|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcC
Confidence 478999999999999999999999999999997655 6777787775542 23457899
Q ss_pred cCCCCeEEEEcCCC
Q 016358 120 VDRIPSLIPLASDG 133 (390)
Q Consensus 120 v~~~P~~~~~d~~G 133 (390)
|.++||+++|. +|
T Consensus 426 I~~~PTii~Fk-~g 438 (463)
T TIGR00424 426 LGSFPTILFFP-KH 438 (463)
T ss_pred CCccceEEEEE-CC
Confidence 99999999996 44
No 214
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=8.7e-10 Score=86.66 Aligned_cols=62 Identities=10% Similarity=0.249 Sum_probs=52.9
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+.++|+||++||++|+.+.|.|.++.+.+ ..+.++.|..|. ...++++|+|.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~-----------------------~~~l~~~~~v~ 74 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDE-----------------------DKEKAEKYGVE 74 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCc-----------------------CHHHHHHcCCC
Confidence 56889999999999999999999998775 346777777775 36789999999
Q ss_pred ccceEEEECC
Q 016358 283 GIPALVLIGP 292 (390)
Q Consensus 283 ~~P~~~lid~ 292 (390)
++|++++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999964
No 215
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=4.5e-10 Score=88.30 Aligned_cols=65 Identities=26% Similarity=0.452 Sum_probs=53.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+++.++|+||++||++|+.+.|.|+++.+.+ +. ++++.|++|.. ..++++|++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~-----------------------~~l~~~~~v 73 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED-----------------------KEKAEKYGV 73 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC-----------------------HHHHHHcCC
Confidence 3667899999999999999999999998875 22 67777776632 578899999
Q ss_pred CCCCeEEEEcCC
Q 016358 121 DRIPSLIPLASD 132 (390)
Q Consensus 121 ~~~P~~~~~d~~ 132 (390)
.++|++++++.+
T Consensus 74 ~~vPt~~i~~~g 85 (113)
T cd02975 74 ERVPTTIFLQDG 85 (113)
T ss_pred CcCCEEEEEeCC
Confidence 999999999743
No 216
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-10 Score=99.30 Aligned_cols=74 Identities=31% Similarity=0.632 Sum_probs=62.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.|+...+|.|+|+|+|+||+||++.+|.+..++.+|.. .|+..+|-++- +..
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c---------------------~~t 66 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDEC---------------------RGT 66 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHh---------------------hch
Confidence 346666789999999999999999999999999999954 67777775553 788
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+..+||...||++++. +|..+
T Consensus 67 aa~~gV~amPTFiff~-ng~ki 87 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR-NGVKI 87 (288)
T ss_pred hhhcCcccCceEEEEe-cCeEe
Confidence 8999999999999995 77554
No 217
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.07 E-value=1.4e-09 Score=86.57 Aligned_cols=78 Identities=24% Similarity=0.482 Sum_probs=56.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCc-hHHHHHHHHcc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED-RARQDLCRIFN 280 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 280 (390)
|+.++|+|+++|||+|+.+.|.|.++.++.+ ..|..|++|.+.. ..... ..-.++.+.|+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 5779999999999999999999999988743 4689999885420 00000 01234556655
Q ss_pred ----ccccceEEEECCCCcEEee
Q 016358 281 ----IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 ----v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+.+.+
T Consensus 84 i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 84 IPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CcccCCCCCEEEEE-eCCeEEEE
Confidence 5569999999 88888776
No 218
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.07 E-value=3.6e-09 Score=91.31 Aligned_cols=120 Identities=19% Similarity=0.345 Sum_probs=96.9
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHHHHHhhh
Q 016358 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHS 258 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~ 258 (390)
-+|.| +.+|+.++-.++.||++|+||..+.||. |..++..|.+..++..+..+..+.-|+|++|. +.+...++++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 46888 9999999999999999999999999998 99999999999998876433444478999998 4577888888
Q ss_pred cCC--cccccCCchHHHHHHHHcccccc--c-------------eEEEECCCCcEEeeCcch
Q 016358 259 IMP--WLAIPYEDRARQDLCRIFNIKGI--P-------------ALVLIGPDGKTISTNGKE 303 (390)
Q Consensus 259 ~~~--~~~~~~~~~~~~~l~~~~~v~~~--P-------------~~~lid~~G~v~~~~g~~ 303 (390)
... .+.+.-..+.-.++++.|.|.-- | .+|||||+|+.+...|++
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 655 45566566677899999998421 3 378999999999876644
No 219
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.06 E-value=4e-10 Score=95.45 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++|+|.||++||++|+.+.|.|.++++++.. +.++.+|.+. ..++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~------vkF~kVd~d~----------------------~~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA------VKFCKIRASA----------------------TGASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC------eEEEEEeccc----------------------hhhHHhCCCC
Confidence 45999999999999999999999999998853 4555555433 2678899999
Q ss_pred CCCeEEEEcCCCccccc
Q 016358 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
.+||++++. +|+++.+
T Consensus 135 ~vPTlllyk-~G~~v~~ 150 (175)
T cd02987 135 ALPALLVYK-GGELIGN 150 (175)
T ss_pred CCCEEEEEE-CCEEEEE
Confidence 999999995 8987753
No 220
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.05 E-value=5.8e-10 Score=86.28 Aligned_cols=67 Identities=19% Similarity=0.437 Sum_probs=53.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.++++.+++ ..++.+..++.+. ..++..+++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~ 71 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV 71 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence 48899999999999999999999999999863 1345566555543 346677889
Q ss_pred cccceEEEECCCC
Q 016358 282 KGIPALVLIGPDG 294 (390)
Q Consensus 282 ~~~P~~~lid~~G 294 (390)
.++|+++++.+++
T Consensus 72 ~~~Pt~~~~~~~~ 84 (104)
T cd02995 72 DGFPTILFFPAGD 84 (104)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999995444
No 221
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.05 E-value=6.9e-09 Score=90.28 Aligned_cols=115 Identities=21% Similarity=0.472 Sum_probs=91.7
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH---HHHHHhhh-
Q 016358 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS- 258 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~- 258 (390)
+|++ +.+|+.+++.+++||+++|+|.-+.||. |..++..|..+.++.......++++++|++|++. +..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6888 9999999999999999999999999998 9999999999999988335689999999999854 33444444
Q ss_pred c-CC-cccccCCchHHHHHHHHccccc--c-------------ceEEEECCCCcEEee
Q 016358 259 I-MP-WLAIPYEDRARQDLCRIFNIKG--I-------------PALVLIGPDGKTIST 299 (390)
Q Consensus 259 ~-~~-~~~~~~~~~~~~~l~~~~~v~~--~-------------P~~~lid~~G~v~~~ 299 (390)
. .+ |..+....+..+++++.|++.. + ..++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 1 11 4455445556778999998752 2 247899999999877
No 222
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.03 E-value=1.3e-09 Score=105.09 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++|||+|||+||++|+.+.|.|.+++++|+. .++.++.|.+|.+. .....+.|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHcC
Confidence 678999999999999999999999999999974 46888888888642 123446899
Q ss_pred ccccceEEEECC
Q 016358 281 IKGIPALVLIGP 292 (390)
Q Consensus 281 v~~~P~~~lid~ 292 (390)
|.++||+++|..
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999943
No 223
>PTZ00062 glutaredoxin; Provisional
Probab=99.03 E-value=8.9e-10 Score=94.92 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=51.0
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..++++|||+||++|+.+.|.|.++.++|++ +.++.+|.+ |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~d-----------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNLA-----------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEccc-----------------------------cCcc
Confidence 4589999999999999999999999999964 566666531 8999
Q ss_pred ccceEEEECCCCcEEee
Q 016358 283 GIPALVLIGPDGKTIST 299 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~ 299 (390)
++|+++++ ++|+++.+
T Consensus 62 ~vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFY-QNSQLINS 77 (204)
T ss_pred cceEEEEE-ECCEEEee
Confidence 99999999 68888776
No 224
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.01 E-value=4.6e-09 Score=77.48 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=50.8
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016358 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
.+..||++||++|+...|.|.++++.++ ..+.++.|..+.+ .+++++||+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence 4678999999999999999999999886 4477777777643 567788999999
Q ss_pred ceEEEECCCCcE
Q 016358 285 PALVLIGPDGKT 296 (390)
Q Consensus 285 P~~~lid~~G~v 296 (390)
|++++ +|+.
T Consensus 55 Pt~~~---~g~~ 63 (82)
T TIGR00411 55 PAIVI---NGDV 63 (82)
T ss_pred CEEEE---CCEE
Confidence 99886 5654
No 225
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.99 E-value=2e-09 Score=107.88 Aligned_cols=74 Identities=22% Similarity=0.457 Sum_probs=57.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++.+. +.+.++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHHHH
Confidence 4589999999999999999988764 56666663 3566666665431 1246889
Q ss_pred HHccccccceEEEECCCCcEE
Q 016358 277 RIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~ 297 (390)
++|++.++|+++++|++|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCc
Confidence 999999999999999999985
No 226
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-09 Score=104.55 Aligned_cols=88 Identities=22% Similarity=0.412 Sum_probs=65.9
Q ss_pred CceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcc
Q 016358 184 RDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWL 263 (390)
Q Consensus 184 p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 263 (390)
...++.+++..+.-.-.....++|.||||||++|++++|.+.+.+..+++ .+-.|....+|.+.
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke---~~s~i~LakVDat~------------- 87 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKE---EGSPVKLAKVDATE------------- 87 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc---cCCCceeEEeecch-------------
Confidence 33444444444444434457899999999999999999999999999986 33344455566654
Q ss_pred cccCCchHHHHHHHHccccccceEEEECCCCcE
Q 016358 264 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 264 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
...++.+|+|+++||+-++ ++|+.
T Consensus 88 --------~~~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 88 --------ESDLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred --------hhhhHhhhcCCCCCeEEEE-ecCCc
Confidence 5789999999999999999 66664
No 227
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.96 E-value=2.5e-09 Score=84.81 Aligned_cols=100 Identities=12% Similarity=0.256 Sum_probs=66.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+|+|+|++.||++|+.+...+ .++.+... +++.+|-+..|... ....
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~~~- 74 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KNLS- 74 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CCcC-
Confidence 469999999999999999998764 23333332 34444444443221 0000
Q ss_pred HccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016358 278 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
..+ .++|+++++|++|+++.+ +..+++...|-.....+..|.+.+++...
T Consensus 75 ~~g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~m~~a~~ 124 (130)
T cd02960 75 PDG-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIENMKKALK 124 (130)
T ss_pred ccC-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHHHHHHHH
Confidence 122 579999999999999877 23356666676677778888888876543
No 228
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.96 E-value=5.8e-09 Score=78.26 Aligned_cols=68 Identities=26% Similarity=0.584 Sum_probs=57.0
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
++++|.||++||++|+.+.+.++++.+. . .++.++.++.+. ...+.+.|++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~-----------------------~~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDE-----------------------NPELAEEYGVR 62 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCC-----------------------ChhHHHhcCcc
Confidence 7899999999999999999999999888 2 567788887765 36788899999
Q ss_pred ccceEEEECCCCcEEee
Q 016358 283 GIPALVLIGPDGKTIST 299 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~ 299 (390)
++|+++++ ++|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 46665544
No 229
>PLN02309 5'-adenylylsulfate reductase
Probab=98.93 E-value=3.4e-09 Score=102.14 Aligned_cols=67 Identities=18% Similarity=0.413 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hcC
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RYR 119 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 119 (390)
++++++|+||++||++|+.+.|.+.+++++++..+ +.+..|++|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 68999999999999999999999999999997655 556555555222 46675 699
Q ss_pred cCCCCeEEEEcC
Q 016358 120 VDRIPSLIPLAS 131 (390)
Q Consensus 120 v~~~P~~~~~d~ 131 (390)
|.++||+++|.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999963
No 230
>PLN02309 5'-adenylylsulfate reductase
Probab=98.92 E-value=6.1e-09 Score=100.35 Aligned_cols=68 Identities=18% Similarity=0.423 Sum_probs=56.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (390)
+++++||+|||+||++|+.+.|.+.+++++|+. .++.++.|++|.+ ...+++ .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence 578999999999999999999999999999975 5688888877733 245664 69
Q ss_pred cccccceEEEECCC
Q 016358 280 NIKGIPALVLIGPD 293 (390)
Q Consensus 280 ~v~~~P~~~lid~~ 293 (390)
+|.++||++++.++
T Consensus 419 ~I~~~PTil~f~~g 432 (457)
T PLN02309 419 QLGSFPTILLFPKN 432 (457)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999433
No 231
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-08 Score=79.85 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=85.8
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHHH
Q 016358 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDL 255 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~ 255 (390)
-+|.+ +.+|+.++|++++||++||.-.|+-|+.-. ....|+.||++|++ .++.|+++.++. +.+++.+
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHHH
Confidence 46777 999999999999999999999999999987 45689999999987 999999999863 4578888
Q ss_pred hhhcCCcccccCC----------chHHHHHHHHcc-------ccccceEEEECCCCcEEeeC
Q 016358 256 NHSIMPWLAIPYE----------DRARQDLCRIFN-------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~~~~~~~~~~~----------~~~~~~l~~~~~-------v~~~P~~~lid~~G~v~~~~ 300 (390)
+....--.++|.. ......|...-. |..-=+-+|||++|+|+.|-
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 8875444666641 112233333321 22334679999999999983
No 232
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.5e-09 Score=87.69 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=86.7
Q ss_pred cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC--hhHHHHHHHhCCC---cceecCh
Q 016358 35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--ENGFEEHFKCMPW---LAVPFDE 108 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~~~~~~~~---~~~~~~~ 108 (390)
++++++.||+++|+|| +..-+.|..+...+.+.|++|++.| .+|+++|+|.. ..+|++..++..- ..+|+..
T Consensus 26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~Pmia 103 (194)
T COG0450 26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIA 103 (194)
T ss_pred EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHHHHHHHhcHHhcCCccceecceEE
Confidence 9999988899999999 7778899999999999999999998 99999999963 3466666665553 6788888
Q ss_pred hHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016358 109 TLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 109 ~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
|...++++.||+- .+-.++++|++|.+.+.
T Consensus 104 D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 104 DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred cCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 8889999999985 45689999999988743
No 233
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.89 E-value=1.9e-08 Score=87.58 Aligned_cols=113 Identities=22% Similarity=0.379 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCCh---hHHHHHHH-
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDE---NGFEEHFK- 97 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~-~C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~---~~~~~~~~- 97 (390)
.+.|.+.+|+ +++..++||+++|+|.-+.|| .|..+...|.++.+++. ..+.++.+++|++|.++ +..++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6789999999 999999999999999999998 89999999999999998 66777999999999654 45677777
Q ss_pred h-CC-CcceecChhHHHHHHHhcCcCC---------------CCeEEEEcCCCcccc
Q 016358 98 C-MP-WLAVPFDETLHKKLRIRYRVDR---------------IPSLIPLASDGTLIE 137 (390)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~~~d~~G~i~~ 137 (390)
. .+ |..+....+...++++.|++.. ...++++|++|++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 1 12 5666666777888999988762 346788888888764
No 234
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.87 E-value=1.5e-09 Score=95.30 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
.-.++|+||||||+||++..|.|.++--.+++-| +-|..-.+|+++- ..++.+|+|+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~f---------------------~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATRF---------------------PAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcC--Cceeecccccccc---------------------hhhHhhhccC
Confidence 4689999999999999999999999999998877 5566667777663 7899999999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016358 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
++||+.++..+..+-+|.
T Consensus 100 GYPTIk~~kgd~a~dYRG 117 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRG 117 (468)
T ss_pred CCceEEEecCCeeeecCC
Confidence 999999997554444444
No 235
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.87 E-value=3.1e-09 Score=106.57 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=60.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..+||+|+|+|||+||++|+.+.+.+ .++.+++++ +.++.++++.+.+ .+
T Consensus 467 l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~-------------------~~ 523 (571)
T PRK00293 467 LAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNA-------------------ED 523 (571)
T ss_pred HHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCCh-------------------hh
Confidence 334445799999999999999999988865 566666642 5566666553321 23
Q ss_pred HHHHHhcCcCCCCeEEEEcCCCccc
Q 016358 112 KKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.++.++|++.++|+++++|++|+++
T Consensus 524 ~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 524 VALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCc
Confidence 6889999999999999999999875
No 236
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.85 E-value=7.1e-09 Score=89.03 Aligned_cols=67 Identities=10% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++|+|.||++||++|+.+.|.|.+++.++.. +.++.+|.+ .....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~------vkFvkI~ad------------------------~~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD------TKFVKIIST------------------------QCIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC------CEEEEEEhH------------------------HhHhhCCCC
Confidence 56999999999999999999999999999853 444554422 124789999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016358 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
++||++++. +|+++.+-
T Consensus 152 ~lPTlliyk-~G~~v~~i 168 (192)
T cd02988 152 NLPTILVYR-NGDIVKQF 168 (192)
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999995 99887544
No 237
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.85 E-value=1.8e-08 Score=88.74 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCcEEEEEEcc---CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++...++.|++ +||++|+.+.|.+.++.+++. ++++..+.+|.+. ..++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence 33445666777 999999999999999999884 3566677777543 578999
Q ss_pred HccccccceEEEECCCCcEE
Q 016358 278 IFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~ 297 (390)
.|+|.++||+++++ +|+.+
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~ 90 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDG 90 (215)
T ss_pred HcCCCccCEEEEEe-CCeee
Confidence 99999999999994 56654
No 238
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.85 E-value=2.9e-08 Score=85.74 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=93.3
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhC-CCcEEEEEEecCC---ChhHHHHHHH
Q 016358 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---DENGFEEHFK 97 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~-~C~~~~p~l~~~~~~~~~~-~~~~~vv~v~~d~---~~~~~~~~~~ 97 (390)
++++|++.+|+ ++-.++.||++||+|.-+.|| .|..+...|.++-+++.+. +..+.-++|++|. +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 78889999999 999999999999999999999 7999999999988888664 3334579999997 4557788888
Q ss_pred hCC--CcceecChhHHHHHHHhcCcCCC--C-------------eEEEEcCCCcccccc
Q 016358 98 CMP--WLAVPFDETLHKKLRIRYRVDRI--P-------------SLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~v~~~--P-------------~~~~~d~~G~i~~~~ 139 (390)
... .+.+....+.-+.+|+.|.|..- | .++++||+|+++...
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh
Confidence 655 35555566777899999998532 2 567889999887433
No 239
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.84 E-value=8.8e-09 Score=77.26 Aligned_cols=67 Identities=27% Similarity=0.594 Sum_probs=54.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.+.++++.++ . .+ +.++.++++.. ..+++.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~~--~~~~~i~~~~~-----------------------~~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-PK--VKFVKVDVDEN-----------------------PELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-CC--ceEEEEECCCC-----------------------hhHHHhcCcc
Confidence 48999999999999999999999999887 2 22 66666665532 5788999999
Q ss_pred CCCeEEEEcCCCccc
Q 016358 122 RIPSLIPLASDGTLI 136 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~ 136 (390)
++|++++++ +|+++
T Consensus 63 ~~P~~~~~~-~g~~~ 76 (93)
T cd02947 63 SIPTFLFFK-NGKEV 76 (93)
T ss_pred cccEEEEEE-CCEEE
Confidence 999999996 66644
No 240
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.84 E-value=1.5e-08 Score=74.76 Aligned_cols=58 Identities=14% Similarity=0.327 Sum_probs=47.6
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016358 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
.+..||++||++|+.+.|.|+++++.++.. +.++.|+++.+ ..++++|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN-----------------------PQKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence 467899999999999999999999988643 66666666533 4677889999999
Q ss_pred eEEE
Q 016358 125 SLIP 128 (390)
Q Consensus 125 ~~~~ 128 (390)
++++
T Consensus 56 t~~~ 59 (82)
T TIGR00411 56 AIVI 59 (82)
T ss_pred EEEE
Confidence 9886
No 241
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.83 E-value=4.7e-08 Score=77.02 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+++|+|+++||++|+.+.... .++.+.+. .+ +|.+..|.+.. ....+++
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~--~v~~~~d~~~~-------------------e~~~~~~ 70 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----EN--FIFWQCDIDSS-------------------EGQRFLQ 70 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hC--EEEEEecCCCc-------------------cHHHHHH
Confidence 469999999999999999986532 34444444 23 44554443210 1357889
Q ss_pred HccccccceEEEECC-CCcEEee
Q 016358 278 IFNIKGIPALVLIGP-DGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~-~G~v~~~ 299 (390)
.|++.++|+++++|+ +|+++.+
T Consensus 71 ~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 71 SYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhCccCCCeEEEEeCccCcEeEE
Confidence 999999999999999 8999887
No 242
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.81 E-value=2.9e-08 Score=70.11 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016358 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
-+..|+++||++|+...+.|+++.+.+ .++.+..+.++.+ .++++.||+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCccc
Confidence 367899999999999999999997654 4567777776643 568889999999
Q ss_pred ceEEEECCCCcEEee
Q 016358 285 PALVLIGPDGKTIST 299 (390)
Q Consensus 285 P~~~lid~~G~v~~~ 299 (390)
|++++ +|++++.
T Consensus 54 Pti~i---~~~~~~~ 65 (67)
T cd02973 54 PAIVI---NGKVEFV 65 (67)
T ss_pred CEEEE---CCEEEEe
Confidence 99765 4666654
No 243
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-08 Score=81.13 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=86.7
Q ss_pred HHhhccCCceEE-eCCCCeeeecccCC-cEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016358 177 QLLAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~~~l~~~~g-k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
--+|+..|||++ +.+|+.++|..+.| ++||++||..- -|-|.+..-.+..-|+++++ .+.+|++++.|... ..
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~s~-sq 138 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDDSA-SQ 138 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCchH-HH
Confidence 346999999999 99999999999988 58888888544 45599999999999999986 78899999998642 33
Q ss_pred HHhhhcCCcccccC--CchHHHHHHHHccccccc-------eEEEECCCCcE
Q 016358 254 DLNHSIMPWLAIPY--EDRARQDLCRIFNIKGIP-------ALVLIGPDGKT 296 (390)
Q Consensus 254 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~v~~~P-------~~~lid~~G~v 296 (390)
..|... .++|| ..|+.+++.+.+|+...| ..++++++|..
T Consensus 139 KaF~sK---qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k 187 (211)
T KOG0855|consen 139 KAFASK---QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVK 187 (211)
T ss_pred HHhhhh---ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeE
Confidence 333333 34444 667788999999986544 47788776543
No 244
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.80 E-value=1.8e-08 Score=73.04 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=46.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
-|.||++||++|+.+.|.++++.+++... +.++.+| +. ..+.+|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-----~~~~~v~-~~-----------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-----AEFEKVT-DM-----------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-----eEEEEeC-CH-----------------------HHHHHcCCCcCCE
Confidence 47899999999999999999999988643 4445555 21 2356799999999
Q ss_pred EEEEcCCCccc
Q 016358 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+.+
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 998 67655
No 245
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.80 E-value=2e-08 Score=77.54 Aligned_cols=65 Identities=11% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|+++++.|+++||++|..+.|.+.++++++++. +.++.+|.++. ..+++.|++
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~~---------------------~~~~~~~~i 64 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADDF---------------------GRHLEYFGL 64 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHhh---------------------HHHHHHcCC
Confidence 3899999999999999999999999999999865 44444554443 578999999
Q ss_pred C--CCCeEEEEcC
Q 016358 121 D--RIPSLIPLAS 131 (390)
Q Consensus 121 ~--~~P~~~~~d~ 131 (390)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
No 246
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.4e-08 Score=80.22 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=92.3
Q ss_pred cCCceE----EeCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHHHH
Q 016358 182 EGRDYV----LSRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEFD 254 (390)
Q Consensus 182 ~~p~f~----l~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~~ 254 (390)
++|+|. ++..-+.++|++++||+|++.||...-.+ |..+.-.+...+.+|++ -+-+|+++|+|.. .-+|.
T Consensus 9 p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlAW~ 85 (196)
T KOG0852|consen 9 PAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLAWI 85 (196)
T ss_pred CCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhhHh
Confidence 345554 26666789999999999999999655444 99999999999999987 7889999999974 45666
Q ss_pred HhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016358 255 LNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
..-.+.+ -.++|+..|.+.++++.||+- ++-.+++||++|.++..
T Consensus 86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 6655333 456999999999999999983 46679999999999774
No 247
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.79 E-value=2.3e-08 Score=88.24 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=72.5
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..|+|+|||.||+.++.+.|.+.+.++.|++. ..+=++|+.++|.+. ...++.+|.|.
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-~P~~kvvwg~VDcd~---------------------e~~ia~ky~I~ 71 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-FPEGKVVWGKVDCDK---------------------EDDIADKYHIN 71 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-CCCcceEEEEcccch---------------------hhHHhhhhccc
Confidence 67999999999999999999999999999873 333578888888875 57899999999
Q ss_pred ccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016358 283 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
.+||+-++ ++|.+..+ .+.|.+. ++.|.+-+++..
T Consensus 72 KyPTlKvf-rnG~~~~r------EYRg~Rs-------VeaL~efi~kq~ 106 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKR------EYRGQRS-------VEALIEFIEKQL 106 (375)
T ss_pred cCceeeee-eccchhhh------hhccchh-------HHHHHHHHHHHh
Confidence 99999999 44444433 2445544 666766666543
No 248
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-08 Score=97.98 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=88.3
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
...+++.||+|||++|+.++|.+.++...++. +..+++..+ |++. +..++..+++.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~--d~~~---------------------~~~~~~~~~v~ 217 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKI--DATV---------------------HKSLASRLEVR 217 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEee--ccch---------------------HHHHhhhhccc
Confidence 56889999999999999999999999999875 323444444 4433 37899999999
Q ss_pred CCCeEEEEcCCCc-cccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhc--cCCceEEeCCCCeeeec
Q 016358 122 RIPSLIPLASDGT-LIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAI--EGRDYVLSRDHRKITVS 198 (390)
Q Consensus 122 ~~P~~~~~d~~G~-i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~--~~p~f~l~~~g~~~~l~ 198 (390)
.+|+++++.++.. +........ .....+.+............+.+..+. ..|.+. +. ......
T Consensus 218 ~~Pt~~~f~~~~~~~~~~~~~R~-----------~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~~~~~~ 283 (383)
T KOG0191|consen 218 GYPTLKLFPPGEEDIYYYSGLRD-----------SDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFL-DT--AEFLDS 283 (383)
T ss_pred CCceEEEecCCCccccccccccc-----------HHHHHHHHHhhcCCCCCCcccccccCccccccchh-hh--hhhhhh
Confidence 9999999975555 222211111 111122222211111011111111111 001100 11 000011
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHH
Q 016358 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 230 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~ 230 (390)
..+-+..++.|+++||.+|....|.+......
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (383)
T KOG0191|consen 284 LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAEL 315 (383)
T ss_pred hHHhhhhHhhhhcchhhcccccchhHHHHHhc
Confidence 11224678899999999999999999888777
No 249
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.78 E-value=2.6e-08 Score=72.27 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=46.9
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016358 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
|.||++||++|+...|.+.++.+++. ..+++ +.+|. ...+.+||+.++|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~--~~v~~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEF--EKVTD------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEE--EEeCC------------------------HHHHHHcCCCcCCE
Confidence 78999999999999999999999975 34555 44442 12256799999999
Q ss_pred EEEECCCCcEEee
Q 016358 287 LVLIGPDGKTIST 299 (390)
Q Consensus 287 ~~lid~~G~v~~~ 299 (390)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 888 8888743
No 250
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.78 E-value=1.9e-09 Score=62.73 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=14.4
Q ss_pred eeecccCCCCce-EEEEcCCCCCCCccccc
Q 016358 355 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV 383 (390)
Q Consensus 355 ~iC~~C~e~~~~-~~~~~~~~~~~~~~~~~ 383 (390)
+.|+.|++++.+ |.|+|.+|||.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999988 99999999999999997
No 251
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.77 E-value=4.9e-08 Score=75.34 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
|+++++.|+++||++|..+.|.+.+++++|+ ..+.++.|..|. ...+++.||+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~-----------------------~~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADD-----------------------FGRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHh-----------------------hHHHHHHcCC
Confidence 6899999999999999999999999999997 446666666553 3678999999
Q ss_pred c--ccceEEEECC
Q 016358 282 K--GIPALVLIGP 292 (390)
Q Consensus 282 ~--~~P~~~lid~ 292 (390)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999965
No 252
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.76 E-value=6.2e-08 Score=75.49 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=43.5
Q ss_pred CCcEEEEEEcc--CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 201 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+.+.+||.|+| +||+ + .|.+.+|+.+|.. ....+.|.-|.++... ...+.+|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~~------------------~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDYG------------------EKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEeccccc------------------chhhHHHHHH
Confidence 45789999999 6665 3 3666666666643 1133444444443200 0125789999
Q ss_pred cccc--ccceEEEE
Q 016358 279 FNIK--GIPALVLI 290 (390)
Q Consensus 279 ~~v~--~~P~~~li 290 (390)
|+|+ ++||++||
T Consensus 74 y~I~~~gyPTl~lF 87 (116)
T cd03007 74 YKLDKESYPVIYLF 87 (116)
T ss_pred hCCCcCCCCEEEEE
Confidence 9999 99999999
No 253
>PHA02125 thioredoxin-like protein
Probab=98.76 E-value=5.1e-08 Score=70.52 Aligned_cols=57 Identities=32% Similarity=0.605 Sum_probs=42.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+++||++||++|+...|.|.++. +.++-|+.|. ..+++++|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence 68999999999999999986541 1244444333 46889999999999
Q ss_pred eEEEECCCCcEEee
Q 016358 286 ALVLIGPDGKTIST 299 (390)
Q Consensus 286 ~~~lid~~G~v~~~ 299 (390)
|++ +|+.+.+
T Consensus 49 T~~----~g~~~~~ 58 (75)
T PHA02125 49 TLV----NTSTLDR 58 (75)
T ss_pred eEE----CCEEEEE
Confidence 986 4665544
No 254
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=1.9e-08 Score=88.71 Aligned_cols=76 Identities=18% Similarity=0.475 Sum_probs=67.9
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
...|+|.|||+||+.++..+|.+.++++++++...+-.+|+.++|++.+ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 6799999999999999999999999999998875556799999999886 7999999999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016358 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
-+||+.++ .+|....+.
T Consensus 72 KyPTlKvf-rnG~~~~rE 88 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKRE 88 (375)
T ss_pred cCceeeee-eccchhhhh
Confidence 99999999 588877543
No 255
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.74 E-value=6.4e-08 Score=72.31 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=58.0
Q ss_pred cccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 198 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.++++.+.+..|+++||++|....+.+.++.+.+. ++.+..+..+. ..++++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----~i~~~~vd~~~-----------------------~~e~a~ 59 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----NIEHEMIDGAL-----------------------FQDEVE 59 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----CceEEEEEhHh-----------------------CHHHHH
Confidence 35667788999999999999999999999987763 46777777664 367889
Q ss_pred HccccccceEEEECCCCcEEee
Q 016358 278 IFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+|||.++|++++ +|+++.+
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999974 6888876
No 256
>PHA02125 thioredoxin-like protein
Probab=98.74 E-value=2e-08 Score=72.65 Aligned_cols=51 Identities=27% Similarity=0.709 Sum_probs=40.2
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016358 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
+++.||++||++|+.+.|.|.++. +.++.+|.++. .+++++|++.++|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~~-----------~~~~~vd~~~~---------------------~~l~~~~~v~~~P 48 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANVE-----------YTYVDVDTDEG---------------------VELTAKHHIRSLP 48 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHHh-----------heEEeeeCCCC---------------------HHHHHHcCCceeC
Confidence 378999999999999999886531 33455665443 6899999999999
Q ss_pred eEE
Q 016358 125 SLI 127 (390)
Q Consensus 125 ~~~ 127 (390)
|++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
No 257
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=2.1e-08 Score=79.58 Aligned_cols=78 Identities=10% Similarity=0.197 Sum_probs=50.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHH---HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-+||+|+|+|++.||++|+.+...+. ++.+.++++ +|.|+++.+...
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~-----Fv~V~l~~d~td-------------------- 70 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED-----FIMLNLVHETTD-------------------- 70 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC-----eEEEEEEeccCC--------------------
Confidence 4445567999999999999999999887653 333333333 555555532110
Q ss_pred HHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016358 112 KKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.... ..+ .++|+++|+|++|+++.+-
T Consensus 71 ~~~~-~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 71 KNLS-PDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred CCcC-ccC-cccCeEEEECCCCCCcccc
Confidence 0000 122 5799999999999888654
No 258
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.70 E-value=3.6e-08 Score=76.82 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred cCCCEEEEEEec--CCCh---hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 40 CGGKTICLFFSA--NWCR---PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 40 ~~gk~vll~F~~--~~C~---~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-+.+.+||.|+| |||+ +|..++|.+.+... +|+...+|++.. ....+..|
T Consensus 16 ~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---------~v~lakVd~~d~----------------~~~~~~~L 70 (116)
T cd03007 16 PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---------DLLVAEVGIKDY----------------GEKLNMEL 70 (116)
T ss_pred hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---------ceEEEEEecccc----------------cchhhHHH
Confidence 357899999999 7777 55555554444332 155666665310 01113789
Q ss_pred HHhcCcC--CCCeEEEEcCCC
Q 016358 115 RIRYRVD--RIPSLIPLASDG 133 (390)
Q Consensus 115 ~~~~~v~--~~P~~~~~d~~G 133 (390)
+++|+|. ++||+.+|. +|
T Consensus 71 ~~~y~I~~~gyPTl~lF~-~g 90 (116)
T cd03007 71 GERYKLDKESYPVIYLFH-GG 90 (116)
T ss_pred HHHhCCCcCCCCEEEEEe-CC
Confidence 9999999 999999996 55
No 259
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.70 E-value=3.9e-08 Score=72.54 Aligned_cols=68 Identities=21% Similarity=0.539 Sum_probs=45.2
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHH
Q 016358 37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKK 113 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (390)
.+..+||+++|+|+++||++|+.+...+ .++.+.+.++ +|.+.+|.+... ..
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~-----fv~v~vd~~~~~--------------------~~ 66 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN-----FVLVKVDVDDED--------------------PN 66 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC-----SEEEEEETTTHH--------------------HH
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC-----EEEEEEEcCCCC--------------------hh
Confidence 3445799999999999999999998776 3444445544 555555544320 11
Q ss_pred HHHhcCcCCCCeEEEEcC
Q 016358 114 LRIRYRVDRIPSLIPLAS 131 (390)
Q Consensus 114 l~~~~~v~~~P~~~~~d~ 131 (390)
. .+...++|+++++|+
T Consensus 67 ~--~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 67 A--QFDRQGYPTFFFLDP 82 (82)
T ss_dssp H--HHHHCSSSEEEEEET
T ss_pred H--HhCCccCCEEEEeCC
Confidence 1 111166999999985
No 260
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=5.6e-09 Score=99.84 Aligned_cols=69 Identities=25% Similarity=0.477 Sum_probs=60.3
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC
Q 016358 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR 122 (390)
Q Consensus 43 k~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 122 (390)
+..+|.||++|||+|++++|.++++++.+.....-+.|..|++-.+.+ ..+|+.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N---------------------~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN---------------------VKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh---------------------hhhHhhcCCCC
Confidence 478899999999999999999999999999886556677776655554 89999999999
Q ss_pred CCeEEEEcCC
Q 016358 123 IPSLIPLASD 132 (390)
Q Consensus 123 ~P~~~~~d~~ 132 (390)
+|++.++.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999876
No 261
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.5e-07 Score=72.91 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHH
Q 016358 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 254 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 254 (390)
.-+|++ +.+|+.++++.++||++|+.--|+-|+.-.+.-..|++|+++|+. .+++|++..++. ...++.
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHH
Confidence 446788 999999999999999999999999999999888899999999987 899999999853 235566
Q ss_pred HhhhcCCcccccC------CchHHHHHHHHc----------cccccceEEEECCCCcEEeeCc
Q 016358 255 LNHSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 255 ~~~~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~~g 301 (390)
.++....-..+|+ ..+....+-+-+ +|..-=+-+|+|++|+++.|.+
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 6665333233333 111111222111 2233346789999999999843
No 262
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.65 E-value=1e-07 Score=67.30 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016358 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
-+..|+++||++|+...+.|+++.+... + +++..+++|.+ .+++++|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~id~~~~-----------------------~~l~~~~~i~~vP 54 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--N--ISAEMIDAAEF-----------------------PDLADEYGVMSVP 54 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--c--eEEEEEEcccC-----------------------HhHHHHcCCcccC
Confidence 3678999999999999999999876432 2 66666665533 4678899999999
Q ss_pred eEEE
Q 016358 125 SLIP 128 (390)
Q Consensus 125 ~~~~ 128 (390)
++++
T Consensus 55 ti~i 58 (67)
T cd02973 55 AIVI 58 (67)
T ss_pred EEEE
Confidence 9865
No 263
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.64 E-value=4.3e-08 Score=86.30 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=58.7
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..++|.||||||.+|+++.|.++++--.+++ .++-|-.-.+|... -..++..|||+
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgiq 99 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGIQ 99 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhccC
Confidence 5899999999999999999999999888876 45555445556543 46899999999
Q ss_pred ccceEEEECCCCcEEeeCcc
Q 016358 283 GIPALVLIGPDGKTISTNGK 302 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~ 302 (390)
++||+.++-.+-.+-+|+||
T Consensus 100 GYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred CCceEEEecCCeeeecCCCc
Confidence 99999999444444445443
No 264
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.64 E-value=1.5e-06 Score=87.75 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=109.9
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+..+++++.++.|+.+.|..|......|+++.+ +.++ +++...+.+. +.++++
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~-----------------------~~~~~~ 413 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGE-----------------------EPESET 413 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEecccc-----------------------chhhHh
Confidence 456788889999999999999887777777764 4443 6665554332 257889
Q ss_pred hcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeee
Q 016358 117 RYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 196 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~ 196 (390)
+|++...|++.+++.+|+-. . |..+| -|...+..+.+.+........+.+.+-+- -.
T Consensus 414 ~~~v~~~P~~~i~~~~~~~~---~---i~f~g---~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~--------------~~ 470 (555)
T TIGR03143 414 LPKITKLPTVALLDDDGNYT---G---LKFHG---VPSGHELNSFILALYNAAGPGQPLGEELL--------------EK 470 (555)
T ss_pred hcCCCcCCEEEEEeCCCccc---c---eEEEe---cCccHhHHHHHHHHHHhcCCCCCCCHHHH--------------HH
Confidence 99999999999997565421 0 11111 22222222323222222111111111000 01
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016358 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+..+.++..+-.|.+++|++|......++++....+ ++..-.|.... ..+++
T Consensus 471 i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-----~i~~~~i~~~~-----------------------~~~~~ 522 (555)
T TIGR03143 471 IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-----NVEAEMIDVSH-----------------------FPDLK 522 (555)
T ss_pred HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-----CceEEEEECcc-----------------------cHHHH
Confidence 122334455667789999999988877777766642 45544444432 37889
Q ss_pred HHccccccceEEEECCCCcEEee
Q 016358 277 RIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++|+|.++|++++ ||++++.
T Consensus 523 ~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 523 DEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HhCCceecCEEEE---CCEEEEe
Confidence 9999999999776 4666654
No 265
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.63 E-value=1.3e-07 Score=74.48 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=58.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..++|+++|+|+++||++|+.+.... .++.+.++++ .|++.+|.+.. ..
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~-------------------e~ 65 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSS-------------------EG 65 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCc-------------------cH
Confidence 445556799999999999999999887633 3444445443 55555554321 02
Q ss_pred HHHHHhcCcCCCCeEEEEcC-CCccccc
Q 016358 112 KKLRIRYRVDRIPSLIPLAS-DGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~-~G~i~~~ 138 (390)
..++..|++.++|+++++++ +|+++.+
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 67889999999999999999 7887754
No 266
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.61 E-value=1.3e-07 Score=70.69 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=56.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.++.+++-+..|+++||++|....+.+.++.+.+.+ +++..+++|.. .++++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHH
Confidence 4467888999999999999999999999999876532 66777766522 57889
Q ss_pred hcCcCCCCeEEEEcCCCcccc
Q 016358 117 RYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|+|.++|++++ +|+.+.
T Consensus 60 ~~~V~~vPt~vi---dG~~~~ 77 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFG 77 (89)
T ss_pred HcCCccCCEEEE---CCEEEE
Confidence 999999999975 576654
No 267
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-06 Score=70.07 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016358 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+.+.+++.++.||..++..+. -.-+-|......+++.+.++ .+..|+.||.|- +-+..++
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~DL-PFAq~Rf 93 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMDL-PFAQKRF 93 (158)
T ss_pred cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCCC-hhHHhhh
Confidence 5899999999 99999999999999877666654 45566999999999988887 457899999884 4566777
Q ss_pred hhcCCcccccCCch-HHHHHHHHccc--cccc-------eEEEECCCCcEEeeC
Q 016358 257 HSIMPWLAIPYEDR-ARQDLCRIFNI--KGIP-------ALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v--~~~P-------~~~lid~~G~v~~~~ 300 (390)
+...+.-++....| .+..+.+.||+ ...| +++++|.+|+|++..
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 87777666655555 45678899996 3344 689999999999984
No 268
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.57 E-value=3.8e-07 Score=79.87 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=64.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+.+++-|++|+.+.|++|..+.|.|..+.++|. +.|+.|++|... ...+|.... +..+++++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~-----------~~~fp~~~~-~~g~~~~l 179 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRP-----------IPSFPNPRP-DPGQAKRL 179 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCC-----------CcCCCCCCC-CHHHHHHc
Confidence 345788999999999999999999999999975 789999999642 122332221 57788999
Q ss_pred cccccceEEEECCCCcEEee
Q 016358 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
||..+|+++|+++++.....
T Consensus 180 ~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 180 GVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CCCcCCEEEEEECCCCeEEE
Confidence 99999999999998854444
No 269
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5e-07 Score=72.21 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHHH
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~ 97 (390)
.++.+.+|+ ++|++++||++||.-.|+-|+.-. .-..|+.||++|+++| ++|++..++. +.+++.+|+.
T Consensus 8 ~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 8 FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred ceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHH
Confidence 568899999 999999999999999999999765 4557999999999999 9999999973 5668888988
Q ss_pred hCCCcceec------Chh----HHHHHHHhcC-------cCCCCeEEEEcCCCccccccc
Q 016358 98 CMPWLAVPF------DET----LHKKLRIRYR-------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~~~~~~~------~~~----~~~~l~~~~~-------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
...-..+|. ... ..+-|..+.. |..-=+-+++|++|+++.|..
T Consensus 85 ~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 665555555 111 1122222221 222337789999999987654
No 270
>smart00594 UAS UAS domain.
Probab=98.52 E-value=9.9e-07 Score=70.30 Aligned_cols=69 Identities=16% Similarity=0.351 Sum_probs=50.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+|.++|+|+++||++|..+.... .++.+.+. .++-++.+.+.... ...+++
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g~~l~~ 80 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------GQRVSQ 80 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------HHHHHH
Confidence 468999999999999999987643 33444443 33444444433221 367899
Q ss_pred HccccccceEEEECCCC
Q 016358 278 IFNIKGIPALVLIGPDG 294 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G 294 (390)
.|++.++|+++++|++|
T Consensus 81 ~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 81 FYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCcCCCCEEEEEecCC
Confidence 99999999999999997
No 271
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.47 E-value=3.9e-07 Score=73.02 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=45.8
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH-
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI- 278 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 278 (390)
..++..++.|..+|||.|+...|.|.++++.. .++++-.+..|.+ .++...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~-----------------------~el~~~~ 90 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDEN-----------------------KELMDQY 90 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHH-----------------------HHHTTTT
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCC-----------------------hhHHHHH
Confidence 34467888899999999999999999999875 3566666666643 233333
Q ss_pred --ccccccceEEEECCCCcEEee
Q 016358 279 --FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 --~~v~~~P~~~lid~~G~v~~~ 299 (390)
.|..++|+++++|.+|+++.+
T Consensus 91 lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 91 LTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp TT-SS--SSEEEEE-TT--EEEE
T ss_pred HhCCCeecCEEEEEcCCCCEeEE
Confidence 468899999999999999988
No 272
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.45 E-value=4.9e-07 Score=79.16 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=67.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++|+.+.|++|+.+.|.|..+.++++ ++|+.|++|.... ..+|-.. .+..+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~-----------~~fp~~~-~~~g~ 175 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPI-----------PSFPNPR-PDPGQ 175 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCC-----------cCCCCCC-CCHHH
Confidence 45666778999999999999999999999999999983 8899999995432 1222211 14678
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|+..+|+++++++++...
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCeE
Confidence 8999999999999999887443
No 273
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.42 E-value=1.1e-07 Score=55.10 Aligned_cols=29 Identities=28% Similarity=0.890 Sum_probs=27.0
Q ss_pred eeecccCCCCceE-EEEcCCCCCCCccccc
Q 016358 355 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV 383 (390)
Q Consensus 355 ~iC~~C~e~~~~~-~~~~~~~~~~~~~~~~ 383 (390)
|.|+.|.+...+. .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4699999998888 9999999999999997
No 274
>smart00594 UAS UAS domain.
Probab=98.42 E-value=1.5e-06 Score=69.34 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=55.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-++|+++|+|+++||++|..+...+ .++.+.++++ +|++.+|.+.. ..
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~-------------------eg 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTS-------------------EG 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCCh-------------------hH
Confidence 555566799999999999999999888643 3344444433 55555553321 12
Q ss_pred HHHHHhcCcCCCCeEEEEcCCC
Q 016358 112 KKLRIRYRVDRIPSLIPLASDG 133 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G 133 (390)
..++++|+++++|++++++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 6899999999999999999887
No 275
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.42 E-value=1.7e-06 Score=77.15 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=77.4
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.+++++-|++||.+.|++|..+.|.|+.+.++|. +.|+.||+|... ...+|... .+..++++
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gqa~~ 208 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQAQH 208 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHHHHh
Confidence 3445778999999999999999999999999975 789999999752 12333322 24678899
Q ss_pred ccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016358 279 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
+||..+|+++|++++.+....- .+|... .++|.+.+...+.
T Consensus 209 l~v~~~Pal~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~~ 249 (256)
T TIGR02739 209 LGVKYFPALYLVNPKSQKMSPL------AYGFIS-------QDELKERILNVLT 249 (256)
T ss_pred cCCccCceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHh
Confidence 9999999999999996554443 366665 6677666665444
No 276
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.41 E-value=7.2e-07 Score=65.73 Aligned_cols=64 Identities=33% Similarity=0.766 Sum_probs=42.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
+||+++|+|++.||++|+.+...+ .++.+.+. .++..+.|..+... ...
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~-- 67 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA-- 67 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH--
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH--
Confidence 469999999999999999998766 34444344 34455555554321 111
Q ss_pred HccccccceEEEECC
Q 016358 278 IFNIKGIPALVLIGP 292 (390)
Q Consensus 278 ~~~v~~~P~~~lid~ 292 (390)
.+...++|+++++||
T Consensus 68 ~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 68 QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHHCSSSEEEEEET
T ss_pred HhCCccCCEEEEeCC
Confidence 111266999999975
No 277
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-06 Score=70.90 Aligned_cols=108 Identities=23% Similarity=0.264 Sum_probs=85.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHHHHHHHhCC---
Q 016358 28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKCMP--- 100 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~~-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~~~~~~~~--- 100 (390)
+++..-+ ++|+++.||+|+++||. .+--.|..+.-.+...+++|++.+ -+|+++++|... -+|.+.-++.+
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 4554445 99999999999999994 444578888999999999999887 889999999643 35555555544
Q ss_pred CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccc
Q 016358 101 WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~ 137 (390)
-..+|...|.+.++++.||+- .+-.++++|++|.+..
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 356899999999999999983 4568999999998765
No 278
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.34 E-value=3.2e-06 Score=65.03 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=55.3
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC
Q 016358 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 248 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~ 248 (390)
+|++ +++|+.++|+.++||++||.-.|+-|+.-. ....|++|+++|++ .+++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence 4677 999999999999999999999999999988 88899999999987 789999999864
No 279
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.33 E-value=2.5e-06 Score=75.61 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=74.3
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+.+++-|++||.+.|++|..+.|.|+.+.++|. +.|+.||+|... ...+|... .+...++.+
T Consensus 141 la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gqa~~l 202 (248)
T PRK13703 141 LAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQAQRL 202 (248)
T ss_pred HHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhHHHhc
Confidence 344678899999999999999999999999975 689999999742 12333322 234566899
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016358 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
||..+|+++|++++.+-...- .+|... ..+|.+.+...+
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~ 241 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVS 241 (248)
T ss_pred CCcccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHH
Confidence 999999999999986544332 366665 666766665543
No 280
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.29 E-value=1.7e-06 Score=77.07 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++||.+.|++|+.+.|.++.+.++++ ++|+.||+|.... ..+|-. ..+..+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp~~-~~d~gq 205 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLPNS-RSDSGQ 205 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCc-cCChHH
Confidence 44666778899999999999999999999999999875 7899999996532 223321 124678
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|++.+|++++++++....
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HHhcCCccCceEEEEECCCCcE
Confidence 8999999999999999885543
No 281
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.5e-06 Score=67.96 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=78.9
Q ss_pred cceeecCCCc-cccCccCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016358 25 VEFLLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk-~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
..+|.|.+|+ ++|.++.|+ +|+++|| +..-|.|.++.=.+..-|++++..+ .+|++++.|... +-++|..+..
T Consensus 71 D~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~-sqKaF~sKqn- 146 (211)
T KOG0855|consen 71 DFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSA-SQKAFASKQN- 146 (211)
T ss_pred CcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchH-HHHHhhhhcc-
Confidence 4459999999 999999774 8889888 4445778888888999999999877 889999998543 4566666544
Q ss_pred cceecChhHHHHHHHhcCcCCCC-------eEEEEcCCC
Q 016358 102 LAVPFDETLHKKLRIRYRVDRIP-------SLIPLASDG 133 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P-------~~~~~d~~G 133 (390)
+.+.+..|..+++...+|+...| +.++++.+|
T Consensus 147 lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 147 LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 33444677778999999987544 556665443
No 282
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.24 E-value=8.3e-06 Score=62.74 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=54.4
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~ 87 (390)
.++.+++|+ ++|+.++||++||.-.|+-|+.-. ....|++++++|+++| ++|++..++.
T Consensus 4 f~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 4 FSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp SEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 458899999 999999999999999999999888 7889999999999888 9999999874
No 283
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.22 E-value=5.4e-06 Score=72.04 Aligned_cols=135 Identities=16% Similarity=0.249 Sum_probs=90.2
Q ss_pred HHhhccCCceEE-eCCCCe-eeecccC--CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016358 177 QLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~-~~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
..+|..+||..+ ..+|++ .++-++. ++|+||+|.+-.||+=+.-++.++++.++|++ -.+++.|.+.+.+
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d----~adFl~VYI~EAHps 148 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD----VADFLIVYIEEAHPS 148 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh----hhheehhhHhhhCcC
Confidence 346999999998 999998 9999984 59999999999999999999999999999983 3345555442110
Q ss_pred -------------------H--HHHHhhhcCCcccccCCch-HHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhc
Q 016358 251 -------------------K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 308 (390)
Q Consensus 251 -------------------~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~ 308 (390)
+ ...+.+.... ...|+..| .++...+.||...- .+|+| .+|+|++++| .
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg------~ 219 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG------P 219 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC------C
Confidence 1 1112222111 34555433 45667777775432 25666 6999999976 4
Q ss_pred CccCCCCChhhHHHHHHHHHH
Q 016358 309 GAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 309 g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.-.| . ++++++.+++
T Consensus 220 GP~~y--~---~~e~r~~L~~ 235 (237)
T PF00837_consen 220 GPFGY--S---PEELREWLEK 235 (237)
T ss_pred CCCcC--C---HHHHHHHHHh
Confidence 44333 2 5566665654
No 284
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.21 E-value=1.1e-05 Score=62.88 Aligned_cols=68 Identities=41% Similarity=0.703 Sum_probs=52.9
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016358 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
....+++++++.||++||++|+...|.+.++.+++. ..+.++.+..... ...+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHHH
Confidence 333347899999999999999999999999999986 3567777777511 35666
Q ss_pred HHcc--ccccceEEEE
Q 016358 277 RIFN--IKGIPALVLI 290 (390)
Q Consensus 277 ~~~~--v~~~P~~~li 290 (390)
..|+ +..+|+++++
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 7777 8888988755
No 285
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.20 E-value=2.9e-06 Score=75.15 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=66.3
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++||.+.|++|..+.|.|+.+.++++ ++|+.||+|.... ..+|-. ..+...
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp~~-~~d~gq 198 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLPDS-RTDQGQ 198 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCC-ccChhH
Confidence 44666778899999999999999999999999999875 7899999996432 223321 123456
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016358 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|+..+|++++++++....
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HHhcCCcccceEEEEECCCCcE
Confidence 6899999999999999876433
No 286
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.18 E-value=6.9e-06 Score=64.06 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=54.0
Q ss_pred ccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016358 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 36 ~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
......++++++.||++||++|+.++|.+.++.+++... +.++.++... . ...+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~-~---------------------~~~~~ 80 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDD-E---------------------NPDLA 80 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCC-C---------------------ChHHH
Confidence 344444899999999999999999999999999998762 5677777651 1 14566
Q ss_pred HhcC--cCCCCeEEEEc
Q 016358 116 IRYR--VDRIPSLIPLA 130 (390)
Q Consensus 116 ~~~~--v~~~P~~~~~d 130 (390)
..|+ +..+|+++++.
T Consensus 81 ~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 81 AEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHhhhhccCCeEEEEe
Confidence 6677 88889988664
No 287
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.18 E-value=9.2e-06 Score=55.77 Aligned_cols=63 Identities=29% Similarity=0.590 Sum_probs=48.7
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.||++||++|++..+.+.++ ++.. .++.++.++++..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence 4789999999999999999998 3332 7889999998865311 1113578899999
Q ss_pred eEEEECCC
Q 016358 286 ALVLIGPD 293 (390)
Q Consensus 286 ~~~lid~~ 293 (390)
++++++++
T Consensus 56 ~~~~~~~~ 63 (69)
T cd01659 56 TLVVFGPG 63 (69)
T ss_pred EEEEEeCC
Confidence 99999766
No 288
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-05 Score=65.59 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=81.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016358 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
..+..+.+|+ |+|+.++||++||.--|+.|+.=...-..|++++++|++.| ++|++..++. +.++...++
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~f~ 93 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILNFV 93 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHHHH
Confidence 3668899999 99999999999999999999988877779999999999999 9999999863 344566677
Q ss_pred HhCCCcceec------ChhHHHHHHHhc----------CcCCCCeEEEEcCCCccccccc
Q 016358 97 KCMPWLAVPF------DETLHKKLRIRY----------RVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 ~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
...+-..+|+ ..+....+.+.+ .|..-=+-+++|++|.++.|..
T Consensus 94 ~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 94 KVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 6333222232 111112222222 1222336789999999886543
No 289
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.8e-05 Score=63.39 Aligned_cols=87 Identities=18% Similarity=0.385 Sum_probs=63.0
Q ss_pred ccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec----Ch
Q 016358 36 PLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF----DE 108 (390)
Q Consensus 36 ~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~----~~ 108 (390)
.+....||..++.|-.+.|++|.++...+ .++.+-++.+ +.++.+.+..+.. ..+-. -.
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~ 101 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEK 101 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeee
Confidence 34445799999999999999998877654 4566666655 6777777654332 11111 11
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016358 109 TLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.+.+++++.|+++++|+++++|.+|+.+
T Consensus 102 ~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 102 MSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred ecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 2457999999999999999999998766
No 290
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.13 E-value=3.5e-06 Score=81.99 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=59.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHH-HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016358 37 LSSCGGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~C~~C~~~~p~l~-~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
+.+.++|+|+|+|||+||-.|+.+.+..- +...+.+-.+ ++....|-+.+ +..+.++-
T Consensus 469 la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT~~-----------------~p~~~~lL 527 (569)
T COG4232 469 LAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVTAN-----------------DPAITALL 527 (569)
T ss_pred HHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeecCC-----------------CHHHHHHH
Confidence 34445679999999999999999888554 4444444444 77777775543 34467888
Q ss_pred HhcCcCCCCeEEEEcCCCccc
Q 016358 116 IRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++|++-+.|++++++++|+..
T Consensus 528 k~~~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred HHcCCCCCCEEEEECCCCCcC
Confidence 999999999999999888654
No 291
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.12 E-value=2.5e-06 Score=68.33 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=45.9
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.....+..++.|..+|||.|....|.|.++++... + +++-.+..|.+. ++..
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~--i~~~~i~rd~~~-----------------------el~~ 88 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--N--IEVRIILRDENK-----------------------ELMD 88 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--T--EEEEEE-HHHHH-----------------------HHTT
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--C--CeEEEEEecCCh-----------------------hHHH
Confidence 344567788999999999999999999999999743 2 778888766333 2222
Q ss_pred h---cCcCCCCeEEEEcCCCcccc
Q 016358 117 R---YRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 117 ~---~~v~~~P~~~~~d~~G~i~~ 137 (390)
+ .|...+|+++++|.+|+.+.
T Consensus 89 ~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp TTTT-SS--SSEEEEE-TT--EEE
T ss_pred HHHhCCCeecCEEEEEcCCCCEeE
Confidence 2 46789999999998887663
No 292
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.1e-05 Score=64.15 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=94.1
Q ss_pred hhccCCceEEeCCCCeeeecccCCcEEEEEEc--cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CHHHHH
Q 016358 179 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 254 (390)
+|+.+|+|..+..-..+.+.++.|.-+.|.|. |..-|.|..++..+..+.-+|.+ .+++.+++|+|. +...|.
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence 68999999998888889999999987777787 55778899999999999999987 899999999986 345555
Q ss_pred Hhhh----cCC-cccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016358 255 LNHS----IMP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~----~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
+-++ ..+ -+.+|...|.+++++-.|+.- ....+++||++.++.-.
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 4442 222 366777888899999888751 24568999999998765
No 293
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=2.6e-06 Score=81.95 Aligned_cols=69 Identities=28% Similarity=0.556 Sum_probs=59.2
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+..+|.||++||++|+++.|.+.++++.... +..-+.|..|.+-.+. +..+++.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence 5788999999999999999999999998875 6666777777665443 78999999999
Q ss_pred ccceEEEECCC
Q 016358 283 GIPALVLIGPD 293 (390)
Q Consensus 283 ~~P~~~lid~~ 293 (390)
++|++..+.++
T Consensus 116 ~~Ptlryf~~~ 126 (606)
T KOG1731|consen 116 GYPTLRYFPPD 126 (606)
T ss_pred CCceeeecCCc
Confidence 99999999776
No 294
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.08 E-value=3.1e-05 Score=63.85 Aligned_cols=80 Identities=26% Similarity=0.421 Sum_probs=43.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEecCCCH-HHHHHhhhcCCcccccCCchHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+|+++|.++.+||..|+.+... + .++++.+.+ .+|.|.+|.+. ..+...+. ....
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~--------------~~~~ 95 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM--------------NAVQ 95 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH--------------HHHH
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH--------------HHHH
Confidence 46999999999999999988742 1 233333332 37888888764 22222211 1111
Q ss_pred HHccccccceEEEECCCCcEEeeC
Q 016358 277 RIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...|..++|++++++++|+.++..
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EEEEE
T ss_pred HhcCCCCCCceEEECCCCCeeeee
Confidence 122778999999999999999863
No 295
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.08 E-value=1.8e-05 Score=54.24 Aligned_cols=63 Identities=29% Similarity=0.591 Sum_probs=47.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.||++||++|+...+.+.++ .....+ +.++.++++...+. ......+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPAL--------------------EKELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHH--------------------hhHHHhCCCccccE
Confidence 5789999999999999999998 333333 88888888765431 11136789999999
Q ss_pred EEEEcCC
Q 016358 126 LIPLASD 132 (390)
Q Consensus 126 ~~~~d~~ 132 (390)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999754
No 296
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00012 Score=58.85 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+|+.++.|-...|++|.++-..+ .++.+.+. +++.++.+.+...... .-..+. -...-..+++++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv-~f~~g~------kee~~s~~ELa~ 109 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPV-LFKVGD------KEEKMSTEELAQ 109 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcce-EeecCc------eeeeecHHHHHH
Confidence 469999999999999999987765 44555554 5677777766432200 000000 000113579999
Q ss_pred HccccccceEEEECCCCcEEee
Q 016358 278 IFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.|+|+++|+++++|.+|+.+..
T Consensus 110 kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 110 KFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999997766
No 297
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.96 E-value=2.1e-05 Score=76.63 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=52.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHH-HHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
++|+|+|+|||.||-.|+...+..- +.....+- .+ ++.+..|-+. .+..+.++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~--~vlLqaDvT~-----------------~~p~~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QD--VVLLQADVTA-----------------NDPAITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CC--eEEEEeeecC-----------------CCHHHHHHHHHc
Confidence 3469999999999999999887543 22222221 33 5555555332 122367888999
Q ss_pred cccccceEEEECCCCcEE
Q 016358 280 NIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~ 297 (390)
|+-+.|++++++++|+-.
T Consensus 531 ~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred CCCCCCEEEEECCCCCcC
Confidence 999999999999888743
No 298
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.96 E-value=1.8e-05 Score=65.33 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=47.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..++|+|+|.++.+||..|..+...- .++++.++++ +|.|.+|.++.
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~--------------------- 83 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREER--------------------- 83 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT----------------------
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccC---------------------
Confidence 555556799999999999999998777521 3455555554 88888887663
Q ss_pred HHHHHhc--------CcCCCCeEEEEcCCCccccc
Q 016358 112 KKLRIRY--------RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~--------~v~~~P~~~~~d~~G~i~~~ 138 (390)
..+...| |..+.|+.+++.++|+.+..
T Consensus 84 Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 84 PDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 2233333 77899999999999998753
No 299
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.94 E-value=0.00015 Score=57.84 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=61.3
Q ss_pred EEEEEcc--CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 205 IGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 205 vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
.+|.|-+ .-++.+....-.|.++.++|.+ .++.++.|.+|. +..++.+|||.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~-----------------------~~~LA~~fgV~ 90 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQ-----------------------SEAIGDRFGVF 90 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCC-----------------------CHHHHHHcCCc
Confidence 4444443 2445577777788999999963 458888888886 47899999999
Q ss_pred ccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016358 283 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
++||++|+ ++|+++.+ ..|... -.++.+.+++.
T Consensus 91 siPTLl~F-kdGk~v~~-------i~G~~~-------k~~l~~~I~~~ 123 (132)
T PRK11509 91 RFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGL 123 (132)
T ss_pred cCCEEEEE-ECCEEEEE-------EeCcCC-------HHHHHHHHHHH
Confidence 99999999 77777766 566655 35555555543
No 300
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.1e-05 Score=66.57 Aligned_cols=92 Identities=25% Similarity=0.485 Sum_probs=69.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.+.++|.|++.|.+.|+...|.+.++..+|.. ..+.+-.|.+.. -.+.+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGr-----------------------fpd~a~kfri 197 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGR-----------------------FPDVAAKFRI 197 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeecc-----------------------CcChHHheee
Confidence 36899999999999999999999999999975 666776666654 2456677776
Q ss_pred ------cccceEEEECCCCcEEeeCcchhhhhcC-ccCCCCChhhHHH
Q 016358 282 ------KGIPALVLIGPDGKTISTNGKEMISLYG-AKAFPFTESRIAE 322 (390)
Q Consensus 282 ------~~~P~~~lid~~G~v~~~~g~~~~~~~g-~~~~p~~~~~~~~ 322 (390)
+.+||++++ .+|+-+.+ +..+...| +..++++++-+-.
T Consensus 198 s~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred ccCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHHH
Confidence 468999999 77776655 44444443 6788888875544
No 301
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.87 E-value=0.00093 Score=67.01 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+..-+..|..++||+|......++++.... .++..-.| |... ..++++.|+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----~~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----PNITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----CCceEEEE--Echh---------------------CHhHHHhcC
Confidence 3455688899999999998888888876653 33444443 5432 578999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016358 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|++++ +|+.++.
T Consensus 167 v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 167 IMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CcccCEEEE---CCcEEEe
Confidence 999999975 4454433
No 302
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.82 E-value=9.4e-06 Score=51.20 Aligned_cols=30 Identities=33% Similarity=0.712 Sum_probs=27.2
Q ss_pred eecccCCCCceEEEEcCCC-CCCCccccccc
Q 016358 356 VCDCCKMRGRFWAFSCDVC-NYDLHPKCVEG 385 (390)
Q Consensus 356 iC~~C~e~~~~~~~~~~~~-~~~~~~~~~~~ 385 (390)
.|++|++...|-+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 69999999653
No 303
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.80 E-value=9.8e-05 Score=52.59 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=41.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+++||++|+...+.|.+ .+ +++..++++.+... ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 567899999999998877654 23 66777777755431 145677889999999
Q ss_pred EEEE
Q 016358 126 LIPL 129 (390)
Q Consensus 126 ~~~~ 129 (390)
+++.
T Consensus 54 ~~~~ 57 (74)
T TIGR02196 54 IVIG 57 (74)
T ss_pred EEEC
Confidence 8873
No 304
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.79 E-value=0.00019 Score=56.41 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCcEEEEEEccC----CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016358 201 AGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~gk~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+|.++|+++++ ||.+|+..+.. .++.+-+. .++-+++.++.... ..+++
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~la 69 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYRVS 69 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHHHH
Confidence 469999999999 88899876532 33333333 34444444444322 36789
Q ss_pred HHccccccceEEEE---CCCCcEEee
Q 016358 277 RIFNIKGIPALVLI---GPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~li---d~~G~v~~~ 299 (390)
..+++.++|++.++ +.+.+++.+
T Consensus 70 ~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 70 QALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHhCCCCCCEEEEEEecCCceEEEEE
Confidence 99999999999999 555556666
No 305
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.77 E-value=6.1e-05 Score=55.42 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=42.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|+++|||+|+...+.|.++. +. ..+.++-|+.+.+..+. ...+.+.+|+.++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 46799999999999999998875 22 33667777766443221 13466778999999
Q ss_pred eEE
Q 016358 286 ALV 288 (390)
Q Consensus 286 ~~~ 288 (390)
+++
T Consensus 57 ~v~ 59 (84)
T TIGR02180 57 NIF 59 (84)
T ss_pred eEE
Confidence 974
No 306
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.75 E-value=0.0018 Score=64.92 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.++.-+..|..+.||+|......++++....+ ++..- .+|... ..+++++|+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-----~i~~~--~id~~~---------------------~~~~~~~~~ 167 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP-----NISHT--MIDGAL---------------------FQDEVEALG 167 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-----CceEE--EEEchh---------------------CHHHHHhcC
Confidence 34566888999999999988777777766543 33333 344432 478889999
Q ss_pred ccccceEEEECCCCcEEe
Q 016358 281 IKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~ 298 (390)
+.++|++++ +|+.+.
T Consensus 168 v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 168 IQGVPAVFL---NGEEFH 182 (515)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999876 344443
No 307
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=0.0002 Score=51.58 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=38.9
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hcccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI 284 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~ 284 (390)
+..||++||++|++..+.|.++. +.+-.++++.+... ...+.+ .+++.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~----------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG----------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC----------CceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence 56799999999999988876542 23334556544211 112222 2478999
Q ss_pred ceEEEECCCCcEEee
Q 016358 285 PALVLIGPDGKTIST 299 (390)
Q Consensus 285 P~~~lid~~G~v~~~ 299 (390)
|++ ++ .+|+++..
T Consensus 53 P~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KF-ADGSFLTN 65 (77)
T ss_pred CEE-EE-CCCeEecC
Confidence 986 45 36666544
No 308
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.72 E-value=7.7e-05 Score=58.38 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=48.5
Q ss_pred CCcEEEEEEcc-------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016358 201 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
.|++++|+|.+ +|||.|....|.+++.....+ .+..+|.+.+.. ...|+. ++.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~-r~~Wkd---------------p~n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGD-RPEWKD---------------PNN 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE----HHHHC----------------TTS
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCC-HHHhCC---------------CCC
Confidence 34678888875 499999999999999888754 466777777653 233322 134
Q ss_pred HHHH--HccccccceEEEECCCCcEE
Q 016358 274 DLCR--IFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 274 ~l~~--~~~v~~~P~~~lid~~G~v~ 297 (390)
.+.. .+++.++||++-++..++++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EEE
T ss_pred CceEcceeeeeecceEEEECCCCccc
Confidence 4544 69999999999997665543
No 309
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.71 E-value=0.0001 Score=57.74 Aligned_cols=77 Identities=18% Similarity=0.524 Sum_probs=48.2
Q ss_pred cCCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016358 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 40 ~~gk~vll~F~~-------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
..|++++|.|++ +|||.|....|.+++......+. ..+|.|.+.. +..|+. .+.
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~-r~~Wkd---------------p~n 77 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGD-RPEWKD---------------PNN 77 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC----------------TTS
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCC-HHHhCC---------------CCC
Confidence 457888999984 49999999999999988875443 5677777652 222211 113
Q ss_pred HHHH--hcCcCCCCeEEEEcCCCcc
Q 016358 113 KLRI--RYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 113 ~l~~--~~~v~~~P~~~~~d~~G~i 135 (390)
.+.. .++++++||++-++..+++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERL 102 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EE
T ss_pred CceEcceeeeeecceEEEECCCCcc
Confidence 4444 6999999999999755443
No 310
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.69 E-value=0.00052 Score=61.81 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec---CCC-H-------------HHHHHhhhcCCcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DRD-H-------------KEFDLNHSIMPWL 263 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~---d~~-~-------------~~~~~~~~~~~~~ 263 (390)
.++.+|+.|..+.||+|+++.+.+.++.+. .+++|..+.+ ..+ . ..+..........
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 458899999999999999999887766443 2344444432 111 1 1122211111110
Q ss_pred cc-cC---------CchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 264 AI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 264 ~~-~~---------~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+ +. ..+.+..+++.+|++++|++++.|.+|++...
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 00 10 11235578899999999999999999987555
No 311
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.67 E-value=0.00012 Score=53.88 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++|||+|.+..+.|.++. +... ++++-|+.+.+... ....+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~---~~~~~v~~~~~~~~------------------~~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPA---YEVVELDQLSNGSE------------------IQDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCC---CEEEEeeCCCChHH------------------HHHHHHHHhCCCCCCe
Confidence 46789999999999999888875 2221 55665555433321 1234667789999999
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 753
No 312
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00077 Score=54.02 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=88.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016358 26 EFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
++|.+.+.+ ++++++.||..+|..+ +-.-|.|......+++.+.++.+ ..|+.||.|- .-+-++|+...+...
T Consensus 27 ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DL-PFAq~RfC~aeGi~n 101 (158)
T COG2077 27 FTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDL-PFAQKRFCGAEGIEN 101 (158)
T ss_pred eEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCC-hhHHhhhhhhcCccc
Confidence 669999999 9999999987776666 55678999999999999888765 5699999883 335678888887665
Q ss_pred eecChh-HHHHHHHhcCcC--CC-------CeEEEEcCCCccccccccccccc
Q 016358 104 VPFDET-LHKKLRIRYRVD--RI-------PSLIPLASDGTLIEEDLIGLIED 146 (390)
Q Consensus 104 ~~~~~~-~~~~l~~~~~v~--~~-------P~~~~~d~~G~i~~~~~~~~i~~ 146 (390)
+....+ ....+.+.||+. .. -+++++|.+|++++..+..-|..
T Consensus 102 v~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~eit~ 154 (158)
T COG2077 102 VITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEITE 154 (158)
T ss_pred ceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchhhc
Confidence 544443 446678999863 33 48899999999998877655543
No 313
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.67 E-value=0.0002 Score=50.95 Aligned_cols=55 Identities=20% Similarity=0.637 Sum_probs=40.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|+++||++|+...+.|.+ .++.+..++++.+... ...+.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence 457999999999998877754 2356777777654311 24567788999999
Q ss_pred eEEE
Q 016358 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 ~~~~ 56 (74)
T TIGR02196 53 VIVI 56 (74)
T ss_pred EEEE
Confidence 9876
No 314
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.61 E-value=2.9e-05 Score=49.33 Aligned_cols=30 Identities=37% Similarity=0.857 Sum_probs=25.7
Q ss_pred eecccCC-CCceEEEEcCCC-CCCCccccccc
Q 016358 356 VCDCCKM-RGRFWAFSCDVC-NYDLHPKCVEG 385 (390)
Q Consensus 356 iC~~C~e-~~~~~~~~~~~~-~~~~~~~~~~~ 385 (390)
.|++|++ .-.|-||+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 5999997 445999999999 69999999653
No 315
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.56 E-value=0.00027 Score=50.96 Aligned_cols=62 Identities=19% Similarity=0.508 Sum_probs=39.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hcCcCCCC
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RYRVDRIP 124 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~P 124 (390)
+..||++||++|++..+.|.++ + +++..++++.+... ...+.. .++..++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5678999999999988876544 2 33556666654321 122222 24888999
Q ss_pred eEEEEcCCCcccc
Q 016358 125 SLIPLASDGTLIE 137 (390)
Q Consensus 125 ~~~~~d~~G~i~~ 137 (390)
++ +++ +|+.+.
T Consensus 54 ~i-~~~-~g~~l~ 64 (77)
T TIGR02200 54 TV-KFA-DGSFLT 64 (77)
T ss_pred EE-EEC-CCeEec
Confidence 97 454 666553
No 316
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00027 Score=54.10 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=51.9
Q ss_pred CCcEEEEEEcc--------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHH
Q 016358 201 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 272 (390)
Q Consensus 201 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
+|+.++++|.+ +|||.|.+..|.+.+..+... .++.+|.+.+... |+-.+++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~r----------------p~Wk~p~ 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNR----------------PYWKDPA 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCC----------------CcccCCC
Confidence 34557788876 599999999999988888655 6777777776532 2223335
Q ss_pred HHHHHHccc-cccceEEEECC
Q 016358 273 QDLCRIFNI-KGIPALVLIGP 292 (390)
Q Consensus 273 ~~l~~~~~v-~~~P~~~lid~ 292 (390)
..+....++ .++||++=.++
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 566667776 89999988864
No 317
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.42 E-value=0.0011 Score=57.59 Aligned_cols=95 Identities=15% Similarity=0.305 Sum_probs=58.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-Ch---------------hHHHHHHHh
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DE---------------NGFEEHFKC 98 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-~~---------------~~~~~~~~~ 98 (390)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+..+.++.+.+.. .. ..|.++...
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 55555568999999999999999999998877 1223224444444432 11 122222222
Q ss_pred CCC----cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016358 99 MPW----LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 99 ~~~----~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..- .......+.+..+++.+|+.++|+++ ++ +|+.+
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~-~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA-DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC-CCeEe
Confidence 111 01112445778999999999999998 53 56553
No 318
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.41 E-value=0.0011 Score=58.83 Aligned_cols=94 Identities=20% Similarity=0.396 Sum_probs=59.5
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Ch----------------hHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DE----------------NGFEEH 95 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~ 95 (390)
+....-.|+.+++.|+.+.||+|+++.+.+.++.+ .+ ++|.++.+.. .. ..+.+.
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~ 173 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA 173 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence 44444468999999999999999999988776533 34 6666654431 11 112222
Q ss_pred HHhCCC--cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016358 96 FKCMPW--LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 96 ~~~~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
...... .......+.+.++++++|++++|++++- +|+.+
T Consensus 174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 221111 1111144678899999999999999853 67654
No 319
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.40 E-value=0.0032 Score=55.98 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CH--------------HHHHHhhhcCC
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH--------------KEFDLNHSIMP 261 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~--------------~~~~~~~~~~~ 261 (390)
.|+.+|+.|..+.||+|++..+.+.++.+ .++.|..+.... .. ..+...+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 46889999999999999999988776532 345555543221 10 12222222111
Q ss_pred cc--cccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016358 262 WL--AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 262 ~~--~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.. ......+.+..+++++||+++|++++ ++|+++
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 10 01112245678999999999999884 467654
No 320
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00017 Score=61.19 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+.+.++|.|++.|.+.|+++.|.+.++..+|...+ +.+--|++..- ...+++|+|
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf-----------------------pd~a~kfri 197 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF-----------------------PDVAAKFRI 197 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC-----------------------cChHHheee
Confidence 45699999999999999999999999999998876 44444443321 355667766
Q ss_pred ------CCCCeEEEEcCCCccccc
Q 016358 121 ------DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ------~~~P~~~~~d~~G~i~~~ 138 (390)
+..||++++. +|+.+.|
T Consensus 198 s~s~~srQLPT~ilFq-~gkE~~R 220 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQ-KGKEVSR 220 (265)
T ss_pred ccCcccccCCeEEEEc-cchhhhc
Confidence 4689999995 7766543
No 321
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.33 E-value=0.00061 Score=53.50 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=49.8
Q ss_pred cccCccCCCEEEEEEecC----CChhhhhhH--HHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016358 35 VPLSSCGGKTICLFFSAN----WCRPCKTFT--PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~----~C~~C~~~~--p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
++.+.-++|+++|+++++ ||..|+... |.+.+. ++++ +|.+..|.+..+
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~~-----fv~w~~dv~~~e----------------- 64 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INTR-----MLFWACSVAKPE----------------- 64 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHcC-----EEEEEEecCChH-----------------
Confidence 445556799999999999 888997655 344443 3333 555555533221
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCC
Q 016358 109 TLHKKLRIRYRVDRIPSLIPLASDG 133 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G 133 (390)
..+++..++++++|+++++.+.+
T Consensus 65 --g~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 65 --GYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred --HHHHHHHhCCCCCCEEEEEEecC
Confidence 26899999999999999996443
No 322
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.32 E-value=0.0022 Score=57.77 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=59.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC---C-------------Chh-HHHHHHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD---H-------------DEN-GFEEHFK 97 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d---~-------------~~~-~~~~~~~ 97 (390)
+....-.+|.+++.|+.+.||+|+++.+.+.++.+. .. +++..+.+. . +.. .|..+..
T Consensus 110 i~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---g~--V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~ 184 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS---GK--VQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEA 184 (251)
T ss_pred ccccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc---Cc--eEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 444445688999999999999999999888776542 12 556555431 1 111 1222211
Q ss_pred hCCC--c-ce---ec----ChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016358 98 CMPW--L-AV---PF----DETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 98 ~~~~--~-~~---~~----~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
.... + .. +- ..+.+..+++++|++++|++++.|.+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 185 SGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred hhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1110 0 00 00 12346678899999999999999988864
No 323
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.26 E-value=0.0018 Score=47.78 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=44.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc--ccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 283 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 283 (390)
++.|+.+||++|++....|+++..++ .++.+..++++.+..+ ..++.+.++ +..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~ 58 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET 58 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence 56799999999999999999988765 3456667776654311 123444444 578
Q ss_pred cceEEEECCCCcEE
Q 016358 284 IPALVLIGPDGKTI 297 (390)
Q Consensus 284 ~P~~~lid~~G~v~ 297 (390)
+|+++ + +|+.+
T Consensus 59 vP~if-i--~g~~i 69 (85)
T PRK11200 59 VPQIF-V--DQKHI 69 (85)
T ss_pred CCEEE-E--CCEEE
Confidence 99976 4 46554
No 324
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.23 E-value=0.0013 Score=47.37 Aligned_cols=57 Identities=28% Similarity=0.533 Sum_probs=40.3
Q ss_pred ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEE
Q 016358 210 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL 289 (390)
Q Consensus 210 ~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~l 289 (390)
++++|+.|......++++.+.+. +.+-.+.. .+ ..++ .+|||.++|++ +
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------i~~ei~~~-~~----------------------~~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------IEVEIIDI-ED----------------------FEEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------EEEEEEET-TT----------------------HHHH-HHTT-SSSSEE-E
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------CeEEEEEc-cC----------------------HHHH-HHcCCCCCCEE-E
Confidence 57779999998888888877763 33433333 22 2555 89999999998 5
Q ss_pred ECCCCcEEee
Q 016358 290 IGPDGKTIST 299 (390)
Q Consensus 290 id~~G~v~~~ 299 (390)
| ||++++.
T Consensus 55 I--ng~~~~~ 62 (76)
T PF13192_consen 55 I--NGKVVFV 62 (76)
T ss_dssp E--TTEEEEE
T ss_pred E--CCEEEEE
Confidence 5 5888766
No 325
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.20 E-value=0.0027 Score=55.06 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CH--------------HHHHHhhhcCCc--
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DH--------------KEFDLNHSIMPW-- 262 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~--------------~~~~~~~~~~~~-- 262 (390)
.++++++.|..+.||+|+++.+.+.+ .. .+-.+.++.+.+.. .. +.|.+.......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 36899999999999999999988876 11 11334445444432 11 123222222111
Q ss_pred --ccccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016358 263 --LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 263 --~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.......+.+..+++.+||.++|+++ + .+|+++
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 01112334567899999999999997 5 456653
No 326
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.18 E-value=0.0017 Score=48.74 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC--CC-----hhHHHHHHHhC-CCcceec-ChhHHHHHHH
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD--HD-----ENGFEEHFKCM-PWLAVPF-DETLHKKLRI 116 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~ 116 (390)
+..|+.+.||+|..+.+.+.++......+ +++....+. .. ....+...... ......+ ..-.....++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 46789999999999999999987444332 666666653 22 11111111100 0000011 0114577889
Q ss_pred hcCcCCCCeEEEEc
Q 016358 117 RYRVDRIPSLIPLA 130 (390)
Q Consensus 117 ~~~v~~~P~~~~~d 130 (390)
.+|+.++|++++-+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 99999999999876
No 327
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.13 E-value=0.0027 Score=43.36 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+.+|||+|.+....| ++.+ +.+..++++.+.+ ....+.+..|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE-------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh-------------------HHHHHHHHcCCCccCE
Confidence 4678999999999877655 2334 6677777776542 1255666669999999
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.13 E-value=0.0028 Score=43.23 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=38.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+.+||++|+.....|+ + .++.+-.+.++.+.+ ....+.+..|..++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~------~~i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----E------KGIPYEEVDVDEDEE-------------------AREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----H------TTBEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHH----H------cCCeeeEcccccchh-------------------HHHHHHHHcCCCccC
Confidence 46789999999998777662 2 345666677665531 134566666999999
Q ss_pred eEEE
Q 016358 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 329
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.04 E-value=0.00032 Score=43.31 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.0
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. +-.|-||+|..|. |||...|-.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~ 32 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFS 32 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhh
Confidence 5999998 7899999999998 999999954
No 330
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0035 Score=53.85 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+++.+++.||++||.+|..+...+..+.+.+++ +.+++++.++ ...++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~------~~~~k~~a~~---------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN------AQFLKLEAEE---------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh------heeeeehhhh---------------------hhHHHHHHHH
Confidence 789999999999999999999999999888732 6666666555 3789999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
...|+++++- .|+.+
T Consensus 69 ~~vp~~~~~~-~~~~v 83 (227)
T KOG0911|consen 69 EAVPYFVFFF-LGEKV 83 (227)
T ss_pred hcCceeeeee-cchhh
Confidence 9999999884 55544
No 331
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.99 E-value=0.003 Score=50.40 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCEEEEEEecC--CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~~~--~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+...+|+|.+. -++-+....-.|.++.++|.+.. +.++-|++| ++ ..++.+||
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD--~~---------------------~~LA~~fg 88 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLE--QS---------------------EAIGDRFG 88 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECC--CC---------------------HHHHHHcC
Confidence 34556666532 35667778889999999996432 555555555 33 68999999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016358 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
|.++||+++|. +|+.+.+
T Consensus 89 V~siPTLl~Fk-dGk~v~~ 106 (132)
T PRK11509 89 VFRFPATLVFT-GGNYRGV 106 (132)
T ss_pred CccCCEEEEEE-CCEEEEE
Confidence 99999999995 9987743
No 332
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.97 E-value=0.00042 Score=44.71 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=27.9
Q ss_pred eeecccCC-CCceEEEEcCCCC---CCCccccccc
Q 016358 355 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG 385 (390)
Q Consensus 355 ~iC~~C~e-~~~~~~~~~~~~~---~~~~~~~~~~ 385 (390)
|.|++|++ +-.|-||+|.+|. |||...|-..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 57999998 8899999999998 9999999653
No 333
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.91 E-value=0.0028 Score=46.74 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=31.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
+..|+.+||++|.+....|+++..+++ + +.+..++++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 677899999999999999999887653 3 66777777754
No 334
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.83 E-value=0.00068 Score=43.58 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=28.7
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCcccccccc
Q 016358 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEGI 386 (390)
Q Consensus 355 ~iC~~C~e~~~~~~~~~~~~~-~~~~~~~~~~~ 386 (390)
|.|+.|.....|-+|+|.+|. |||+..|-...
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 579999998889999999999 99999997643
No 335
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.81 E-value=0.0048 Score=44.42 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEE
Q 016358 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLI 127 (390)
Q Consensus 48 ~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 127 (390)
.+++++|+.|......++++.+.++ +++-.+.. .+. .++ .+||+.++|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~----------------------~~~-~~ygv~~vPal- 53 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDF----------------------EEI-EKYGVMSVPAL- 53 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTH----------------------HHH-HHTT-SSSSEE-
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCH----------------------HHH-HHcCCCCCCEE-
Confidence 3367889999998888888888763 34444443 122 455 99999999999
Q ss_pred EEcCCCcccc
Q 016358 128 PLASDGTLIE 137 (390)
Q Consensus 128 ~~d~~G~i~~ 137 (390)
++ ||+++.
T Consensus 54 vI--ng~~~~ 61 (76)
T PF13192_consen 54 VI--NGKVVF 61 (76)
T ss_dssp EE--TTEEEE
T ss_pred EE--CCEEEE
Confidence 45 466553
No 336
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.79 E-value=0.0026 Score=46.35 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=39.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|.++|||+|....+.|.++.. .+.++-+..+.+..+. ...+.+..|..++|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 467889999999998888877643 3456666665442111 23466677889999
Q ss_pred eEE
Q 016358 286 ALV 288 (390)
Q Consensus 286 ~~~ 288 (390)
.++
T Consensus 56 ~v~ 58 (82)
T cd03419 56 NVF 58 (82)
T ss_pred eEE
Confidence 964
No 337
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.77 E-value=0.00082 Score=42.56 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=26.0
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. +-.|-||+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~ 32 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK 32 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence 5999996 7888999999998 999999954
No 338
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.76 E-value=0.0096 Score=51.70 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=78.2
Q ss_pred cCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH-HhhhcC
Q 016358 182 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD-LNHSIM 260 (390)
Q Consensus 182 ~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~-~~~~~~ 260 (390)
++|.+.+ |....+.+..|+++||.+-..+|..|...+..|..|..++....-.++.++.|+--.....+. ..++..
T Consensus 9 ~~p~W~i---~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKI---GGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceE---CCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 3455554 224567778899999999999999999999999999999986444577777777543332222 222222
Q ss_pred CcccccCCc--hHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016358 261 PWLAIPYED--RARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 261 ~~~~~~~~~--~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
--..+|+.. .....+...++-.. =.++|+|+=|++++.-
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYHI 126 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEEe
Confidence 223456542 23456777776443 4679999999999873
No 339
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.73 E-value=0.0071 Score=54.66 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+.+|||.||-+.++.|..+...|..|+.+|+. ++++-|..... . +...|.+
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-----vKFvkI~a~~~-----------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-----VKFVKIRASKC-----------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-----SEEEEEEECGC-----------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-----eEEEEEehhcc-----------------------C-cccCCcc
Confidence 46899999999999999999999999999964 67777765421 1 4457889
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
..+|+++++ ++|.++..
T Consensus 197 ~~LPtllvY-k~G~l~~~ 213 (265)
T PF02114_consen 197 KNLPTLLVY-KNGDLIGN 213 (265)
T ss_dssp TC-SEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEe
Confidence 999999999 78887765
No 340
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.71 E-value=0.00077 Score=43.13 Aligned_cols=29 Identities=28% Similarity=0.701 Sum_probs=26.2
Q ss_pred eecccCCCCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+..-.+.||+|.+|. |||...|-.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~ 31 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFL 31 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHh
Confidence 49999998889999999998 999999944
No 341
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0081 Score=49.35 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=80.0
Q ss_pred CcceeecC-CCccccCccCCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHH----HH
Q 016358 24 GVEFLLSR-QGKVPLSSCGGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGF----EE 94 (390)
Q Consensus 24 ~~~~l~~~-~g~~~l~~~~gk~vll~F~--~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~----~~ 94 (390)
.+.+-.+. .|++.+.++-|--+.|.|. +..-|.|..+...+.+++-+|..++ +..++.|+|.-+ ..| +.
T Consensus 12 ~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi~DIks 89 (224)
T KOG0854|consen 12 VPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWIKDIKS 89 (224)
T ss_pred CCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHHHHHHH
Confidence 33443333 4449999998877777777 6788999999999999999999888 889999999533 222 23
Q ss_pred HHHhCC-CcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCccc
Q 016358 95 HFKCMP-WLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLI 136 (390)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~ 136 (390)
|.+..+ -..+|+..+.+++++-.|++- ..-.+++++++.++.
T Consensus 90 ~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKir 144 (224)
T KOG0854|consen 90 YAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIR 144 (224)
T ss_pred HHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEE
Confidence 333222 255666777788999888762 245788999888776
No 342
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.68 E-value=0.0087 Score=42.16 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|.+....|.+ .+ +++..+++|.+... ...+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467889999999987766654 23 55666777654321 133444457889999
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
No 343
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.68 E-value=0.0048 Score=46.14 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=49.2
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC--CC----HHH-HHHhhh--cCC-cccccCCchHHHHH
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD----HKE-FDLNHS--IMP-WLAIPYEDRARQDL 275 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d--~~----~~~-~~~~~~--~~~-~~~~~~~~~~~~~l 275 (390)
|..|+.+.||+|....+.+.++..... .++.+....+. .. ... ...... ... ...+.... .+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTAL 75 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHH
Confidence 467999999999999999999874443 56777766552 22 111 111100 000 00000000 35678
Q ss_pred HHHccccccceEEEEC
Q 016358 276 CRIFNIKGIPALVLIG 291 (390)
Q Consensus 276 ~~~~~v~~~P~~~lid 291 (390)
++.+|+.++|++++-|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 8899999999998876
No 344
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0044 Score=47.61 Aligned_cols=73 Identities=18% Similarity=0.438 Sum_probs=49.4
Q ss_pred CCCEEEEEEec--------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016358 41 GGKTICLFFSA--------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 41 ~gk~vll~F~~--------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
+|+.+++.|++ +|||.|.+..|.+.+..+....+ +.+|.|.+..-+ . |. +.+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp-~---------Wk------~p~n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRP-Y---------WK------DPAN 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCC-c---------cc------CCCC
Confidence 57779999984 69999999999999888754433 666666665321 1 21 1123
Q ss_pred HHHHhcCc-CCCCeEEEEcCC
Q 016358 113 KLRIRYRV-DRIPSLIPLASD 132 (390)
Q Consensus 113 ~l~~~~~v-~~~P~~~~~d~~ 132 (390)
.+....++ +++||++=.++.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred ccccCCCceeecceeeEEcCc
Confidence 44455555 899999988743
No 345
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.58 E-value=0.0068 Score=44.14 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++|||+|....+.|.++.. .++++-++.+.+... ....+.+.+|..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~------------------~~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSE------------------IQDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHH------------------HHHHHHHHhCCCCCCe
Confidence 477889999999998887777543 155666665543211 1135566778899999
Q ss_pred EE
Q 016358 126 LI 127 (390)
Q Consensus 126 ~~ 127 (390)
++
T Consensus 57 v~ 58 (82)
T cd03419 57 VF 58 (82)
T ss_pred EE
Confidence 74
No 346
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.58 E-value=0.0014 Score=42.77 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=26.1
Q ss_pred eeecccCCCCce-EEEEcCCC-CCCCcccccc
Q 016358 355 YVCDCCKMRGRF-WAFSCDVC-NYDLHPKCVE 384 (390)
Q Consensus 355 ~iC~~C~e~~~~-~~~~~~~~-~~~~~~~~~~ 384 (390)
|.|++|.+...+ -+|+|.+| ||||...|-.
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 469999997766 79999999 6999999955
No 347
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.57 E-value=0.0015 Score=42.32 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=25.7
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. +-.|.||+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~ 32 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF 32 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence 4999997 6789999999998 999999954
No 348
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0023 Score=54.91 Aligned_cols=68 Identities=15% Similarity=0.315 Sum_probs=53.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++.+++.||+.||.+|..+...+..+.+.++. +.+++.+.+. ...+++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence 568899999999999999999998888887743 5555555432 478899999
Q ss_pred ccccceEEEECCCCcEE
Q 016358 281 IKGIPALVLIGPDGKTI 297 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~ 297 (390)
+.+.|.+.++ ..|+.+
T Consensus 68 v~~vp~~~~~-~~~~~v 83 (227)
T KOG0911|consen 68 VEAVPYFVFF-FLGEKV 83 (227)
T ss_pred HhcCceeeee-ecchhh
Confidence 9999999888 444433
No 349
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.49 E-value=0.011 Score=42.84 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
.+.-++.|+.+||++|.+....|.+ .+ +++..++++.+.+ ...+.+..|..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 3444678899999999987776653 34 4555667765433 13455567889
Q ss_pred CCCeEEE
Q 016358 122 RIPSLIP 128 (390)
Q Consensus 122 ~~P~~~~ 128 (390)
.+|.+++
T Consensus 57 ~vP~i~i 63 (79)
T TIGR02190 57 TVPQVFI 63 (79)
T ss_pred CcCeEEE
Confidence 9999864
No 350
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.49 E-value=0.087 Score=44.70 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=47.5
Q ss_pred CcE-EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 202 GKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 202 gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++ +++.|..............|..++++++ ..+.++.+..+. ...+.+.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~-----------------------~~~~~~~~~ 146 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADD-----------------------FPRLLKYFG 146 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTT-----------------------THHHHHHTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHH-----------------------hHHHHHHcC
Confidence 444 6777765555556777777788887776 456676666653 356778999
Q ss_pred cc--ccceEEEECCCCcE
Q 016358 281 IK--GIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~--~~P~~~lid~~G~v 296 (390)
+. .+|.+++++.....
T Consensus 147 i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp TTTSSSSEEEEEETTTSE
T ss_pred CCCccCCEEEEEECCCCc
Confidence 97 89999999855443
No 351
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.43 E-value=0.00095 Score=42.87 Aligned_cols=32 Identities=34% Similarity=0.730 Sum_probs=25.0
Q ss_pred CceeecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 353 KAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 353 ~~~iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
..+.|++|+. .-.|-+|+|..|. |||...|-.
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 3578999998 7778899999998 999999954
No 352
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.42 E-value=0.0085 Score=44.29 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC--cCCC
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR--VDRI 123 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 123 (390)
++.|+.+|||+|.+....|.++..++. + +.+..++++.+... ...+.+.++ ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999988887777654322 2 45666666533210 133445555 3789
Q ss_pred CeEEE
Q 016358 124 PSLIP 128 (390)
Q Consensus 124 P~~~~ 128 (390)
|.+++
T Consensus 59 P~ifi 63 (86)
T TIGR02183 59 PQIFV 63 (86)
T ss_pred CeEEE
Confidence 99854
No 353
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.42 E-value=0.0061 Score=53.31 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=75.1
Q ss_pred hccCcce-eecCCCc--cccCccC--CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC--------
Q 016358 21 ASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------- 87 (390)
Q Consensus 21 ~~~~~~~-l~~~~g~--~~l~~~~--gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------- 87 (390)
+..++++ +++.+|+ .++.++. ++|++|+|.+-.||+-+.-...++++.++|.+. .+++.|.+.+
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhhhCcCCCcc
Confidence 4445555 8888888 7888873 689999999999999999999999999999985 3455555421
Q ss_pred ---C----------hh---HHHHHHHhCCCcceec-ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016358 88 ---D----------EN---GFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 88 ---~----------~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+ ++ ..+.+.+.. ...|+ ....++...+.||...- .++++. +|++++..+
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi~-~gkv~Y~Gg 218 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYIIQ-DGKVVYKGG 218 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEEE-CCEEEEeCC
Confidence 0 11 112222223 34455 23345667777876543 444553 899988765
No 354
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.40 E-value=0.02 Score=40.20 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+++||++|......|.+ .++.+..+.+|.+... ...+.+..++.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence 467899999999987766654 2244555666654211 12344444788999
Q ss_pred eEEE
Q 016358 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 9865
No 355
>PHA03050 glutaredoxin; Provisional
Probab=96.37 E-value=0.0082 Score=46.45 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=36.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+|||+|.+....|.+..-.. . .+..+++|.... .......+.+..|.+++|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~--~~~~i~i~~~~~----------------~~~~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----G--AYEIVDIKEFKP----------------ENELRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----C--CcEEEECCCCCC----------------CHHHHHHHHHHcCCCCcCE
Confidence 56788999999998776665542111 1 244455553111 0112356667778889999
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 73 IfI 75 (108)
T PHA03050 73 IFF 75 (108)
T ss_pred EEE
Confidence 854
No 356
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.25 E-value=0.0026 Score=40.38 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=27.5
Q ss_pred ceeecccCCCCceEEEEcCCCC-CCCcccccc
Q 016358 354 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 354 ~~iC~~C~e~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.+.|+.|+..-.|-+|+|..|. |||.+.|-.
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence 5679999998888899999995 999999954
No 357
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.14 E-value=0.017 Score=43.97 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=35.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++-|..+|||+|.+....|.+. + +....+++|.+.+. .+....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~----------------~~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAG----------------KDIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccH----------------HHHHHHHHHhcCCCCcCe
Confidence 5667889999999876655432 3 33455666644321 111234555567889999
Q ss_pred EEEEc
Q 016358 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+ +++
T Consensus 65 V-fi~ 68 (99)
T TIGR02189 65 V-FVG 68 (99)
T ss_pred E-EEC
Confidence 7 453
No 358
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.11 E-value=0.037 Score=38.61 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=39.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|.++||++|+.....|.+.. +.+..+.++.+.+. ...+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~----------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG----------IEFEEIDILEDGEL-------------------REELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC----------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 45688999999999888776542 34556666554321 24555666778889
Q ss_pred eEEEECCCCcEE
Q 016358 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
++++ +|+.+
T Consensus 53 ~~~~---~~~~i 61 (72)
T cd02066 53 QIFI---NGEFI 61 (72)
T ss_pred EEEE---CCEEE
Confidence 7753 45544
No 359
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.10 E-value=0.018 Score=49.32 Aligned_cols=105 Identities=19% Similarity=0.352 Sum_probs=75.6
Q ss_pred eecCCCccccCcc-CCC--EEEEEEe-----cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016358 28 LLSRQGKVPLSSC-GGK--TICLFFS-----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 28 l~~~~g~~~l~~~-~gk--~vll~F~-----~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+...+|+++|.++ .|+ .++..|. ...|+.|..++-.+......+...+ +.++.|+-. ..+.+.+|.+.|
T Consensus 51 F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~rm 127 (211)
T PF05988_consen 51 FDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKRRM 127 (211)
T ss_pred EeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHHhc
Confidence 6667777898886 565 3333333 4679999999999977778788776 778888755 556789999999
Q ss_pred CCcceecChhHHHHHHHhcCc-----CCCCeEEEEcCCCccc
Q 016358 100 PWLAVPFDETLHKKLRIRYRV-----DRIPSLIPLASDGTLI 136 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~~~d~~G~i~ 136 (390)
+|. +|+.......+...|++ ...|.+-+|-++|..+
T Consensus 128 GW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~V 168 (211)
T PF05988_consen 128 GWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRV 168 (211)
T ss_pred CCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEE
Confidence 998 88855545566677776 4567666665565444
No 360
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.08 E-value=0.11 Score=42.44 Aligned_cols=120 Identities=12% Similarity=0.178 Sum_probs=72.2
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHH-hhcccCCceEEEEE-ecCCCH--------HHHHHhhhcCCc
Q 016358 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW 262 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~ 262 (390)
++.+.+.+.||+-+|...|-.-..=..-.|.+..+.+. |+. +.++...| +.|... ...+..-+.+||
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 34555677899988887766544434445666666554 554 56666555 444321 222233335555
Q ss_pred ccccCCchHHHHHHHHcccccc-ceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHH
Q 016358 263 LAIPYEDRARQDLCRIFNIKGI-PALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 328 (390)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~v~~~-P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~ 328 (390)
-.+- .|.+..+.+.|++..- -.++++|++|+|++. ..|. .+++.+++..+.++
T Consensus 105 s~~v--lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G~----Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 105 SQFV--LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFV-------KEGA----LSPAEVQQVIALLK 158 (160)
T ss_pred cEEE--EcCCCceeccccCCCCCceEEEEcCCccEEEE-------ECCC----CCHHHHHHHHHHHh
Confidence 5443 3445677888887643 568899999999998 3443 45566666655554
No 361
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.05 E-value=0.03 Score=48.05 Aligned_cols=111 Identities=20% Similarity=0.397 Sum_probs=76.9
Q ss_pred CCceEEeCCCCeeeeccc-CCcEEE-EE-E-----ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016358 183 GRDYVLSRDHRKITVSEL-AGKTIG-LY-F-----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 183 ~p~f~l~~~g~~~~l~~~-~gk~vl-v~-F-----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
..+++++....+++|.++ .|+-.| |+ | |..-|+-|-..+..++.....+.+ .++.++.|+-. ..+++.
T Consensus 46 ~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~ 121 (211)
T PF05988_consen 46 DKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIE 121 (211)
T ss_pred CCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHH
Confidence 345777444444888886 665333 32 3 246799999999999666677765 77888888854 567888
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccc-----cccceEEEECCCCcEEe
Q 016358 255 LNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTIS 298 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~ 298 (390)
.+.+.++|. +|........+...|++ ...|.+-+|=++|--|+
T Consensus 122 afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 122 AFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred HHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 888999998 88876666677778887 45677665545544443
No 362
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.03 E-value=0.027 Score=39.34 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|+.....|.+.. +.+..++++.+.+ ....+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~-------------------~~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGE-------------------LREELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 46788999999998887766542 3466667665442 1245556667788898
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 ~~~ 56 (72)
T cd02066 54 IFI 56 (72)
T ss_pred EEE
Confidence 754
No 363
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.01 E-value=0.05 Score=41.47 Aligned_cols=75 Identities=11% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..++++|+=.++.||-+......+++.++...+. +.++++.+=..++ ....+++.|||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCC
Confidence 4788899889999999999888888888876553 6788888754443 23789999999
Q ss_pred CC-CCeEEEEcCCCccccc
Q 016358 121 DR-IPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~-~P~~~~~d~~G~i~~~ 138 (390)
.. -|.++++. +|+.++.
T Consensus 76 ~HeSPQ~ili~-~g~~v~~ 93 (105)
T PF11009_consen 76 KHESPQVILIK-NGKVVWH 93 (105)
T ss_dssp ---SSEEEEEE-TTEEEEE
T ss_pred CcCCCcEEEEE-CCEEEEE
Confidence 85 89999995 9988854
No 364
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.00 E-value=0.015 Score=42.91 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=37.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc--ccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 283 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 283 (390)
++.|..+|||+|.+....|.++..++ .++.+..+.++.+... ...+.+.+| +..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t 57 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET 57 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence 56789999999999888887765433 2344555555533211 234555555 378
Q ss_pred cceEE
Q 016358 284 IPALV 288 (390)
Q Consensus 284 ~P~~~ 288 (390)
+|.++
T Consensus 58 VP~if 62 (86)
T TIGR02183 58 VPQIF 62 (86)
T ss_pred cCeEE
Confidence 99984
No 365
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.98 E-value=0.014 Score=47.94 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=33.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.++++++.|+.++||+|+.+.|.+.++..++.+ +.+++..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEEeC
Confidence 578999999999999999999999988776532 55666543
No 366
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.037 Score=55.55 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=54.0
Q ss_pred CCcEEEEEEccCCCcccHhhHH------HHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTS------QLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
.+||++|....+||-.|..+.. .+.++.++ .+|.|.+|+++ -|..+.....
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---------~FV~IKVDREE--------------RPDvD~~Ym~ 98 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---------NFVPVKVDREE--------------RPDVDSLYMN 98 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---------CceeeeEChhh--------------ccCHHHHHHH
Confidence 3599999999999999998863 34444333 48999999864 2233323344
Q ss_pred HHHHcc-ccccceEEEECCCCcEEee
Q 016358 275 LCRIFN-IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 275 l~~~~~-v~~~P~~~lid~~G~v~~~ 299 (390)
+++... -.++|-++++-|+|+..+.
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHhccCCCCceeEEECCCCceeee
Confidence 454443 4589999999999999876
No 367
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=95.90 E-value=0.0058 Score=39.75 Aligned_cols=29 Identities=31% Similarity=0.744 Sum_probs=25.3
Q ss_pred eecccC-CCCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~-e~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+ ..-.|-+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~ 32 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYD 32 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHh
Confidence 599999 56778899999997 999999954
No 368
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.88 E-value=0.037 Score=39.16 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+|||+|.+....|.+ .+ +.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 567889999999987766653 33 4455666664432 134445568889999
Q ss_pred EEEEc
Q 016358 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+ +++
T Consensus 54 i-fi~ 57 (72)
T cd03029 54 V-FID 57 (72)
T ss_pred E-EEC
Confidence 7 453
No 369
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.82 E-value=0.05 Score=38.64 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+.+||++|++....|++ .+ +.+..++++.+.+. ..++.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456778999999987776664 34 55666677654431 245666667778898
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 55 v~i 57 (73)
T cd03027 55 IFF 57 (73)
T ss_pred EEE
Confidence 744
No 370
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=95.77 E-value=0.0074 Score=39.25 Aligned_cols=29 Identities=31% Similarity=0.742 Sum_probs=25.7
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. .-.|-+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence 4999999 7778899999998 999999954
No 371
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.71 E-value=0.053 Score=39.50 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|..+||++|.+....|.+ .| +.+..++++.+.+. ...+ +..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~-------------------~~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEA-------------------AETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCCCcCE
Confidence 567889999999987766633 45 56667777755431 1222 3357789999
Q ss_pred EEE
Q 016358 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 372
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.70 E-value=0.031 Score=40.38 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=35.7
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeE
Q 016358 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSL 126 (390)
Q Consensus 47 l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 126 (390)
..|+.+|||+|......|++ .+ +++..++++.+.+. ..++.+..|..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCEE
Confidence 56789999999988777764 23 44555566654421 2455556678889997
Q ss_pred EE
Q 016358 127 IP 128 (390)
Q Consensus 127 ~~ 128 (390)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
No 373
>PHA03050 glutaredoxin; Provisional
Probab=95.67 E-value=0.022 Score=44.08 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=38.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|..+|||+|++....|.++.-.. ..++++-|.-..+..+ ....+.+..|...+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcC
Confidence 55689999999998777775542211 2344544442111111 134566667888999
Q ss_pred eEEEECCCCcEE
Q 016358 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.+ +|| |+.+
T Consensus 72 ~I-fI~--g~~i 80 (108)
T PHA03050 72 RI-FFG--KTSI 80 (108)
T ss_pred EE-EEC--CEEE
Confidence 97 453 5543
No 374
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.67 E-value=0.039 Score=39.28 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC-CCC
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD-RIP 124 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 124 (390)
+..|+.++||+|.+....|++ .+ +.+..++++.+.+. ...+.+.++.. ++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence 457889999999987776654 23 45666677654321 13455556666 899
Q ss_pred eEE
Q 016358 125 SLI 127 (390)
Q Consensus 125 ~~~ 127 (390)
.++
T Consensus 54 ~v~ 56 (75)
T cd03418 54 QIF 56 (75)
T ss_pred EEE
Confidence 764
No 375
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.65 E-value=0.05 Score=38.53 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.0
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeE
Q 016358 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSL 126 (390)
Q Consensus 47 l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 126 (390)
..|+.++||+|++....|.+ .+ +.+..++++.+.+. ...+ ...|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCcccCEE
Confidence 45778999999988777754 34 55666777755431 1233 33588899997
Q ss_pred EE
Q 016358 127 IP 128 (390)
Q Consensus 127 ~~ 128 (390)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
No 376
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.57 E-value=0.042 Score=39.76 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=39.4
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+.-|+.|..+||++|++....|.+ .++.+..+.++.+.. ...+.+..|..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 334567899999999998877753 233444455554421 13455567889
Q ss_pred ccceEEEECCCCcEE
Q 016358 283 GIPALVLIGPDGKTI 297 (390)
Q Consensus 283 ~~P~~~lid~~G~v~ 297 (390)
.+|.++ + +|+.+
T Consensus 57 ~vP~i~-i--~g~~i 68 (79)
T TIGR02190 57 TVPQVF-I--GGKLI 68 (79)
T ss_pred CcCeEE-E--CCEEE
Confidence 999986 4 45543
No 377
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.51 E-value=0.05 Score=45.14 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=41.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~ 89 (390)
+.+..-.++++|+.|+...||+|.++.+.+.++.+++-+.+ ++.+++..+....
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDK 58 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSH
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccc
Confidence 55666678999999999999999999999999999982221 3888888775443
No 378
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.092 Score=38.14 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=34.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH-HhcCcCCCC
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR-IRYRVDRIP 124 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~P 124 (390)
+..|.-++||+|.+....|. ..| ++...+.++.++.. . ..+.. +..|.+++|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~-----------------~-~~~~~~~~~g~~tvP 55 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPE-----------------E-AREMVKRGKGQRTVP 55 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHH-----------------H-HHHHHHHhCCCCCcC
Confidence 56678899999998766555 345 44555555433310 0 12333 333889999
Q ss_pred eEEEE
Q 016358 125 SLIPL 129 (390)
Q Consensus 125 ~~~~~ 129 (390)
.+++=
T Consensus 56 ~I~i~ 60 (80)
T COG0695 56 QIFIG 60 (80)
T ss_pred EEEEC
Confidence 97763
No 379
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.19 E-value=0.023 Score=51.37 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++.+|||.||-+.++.|..+...|..|+.+|.. +.++-|... . ..+...|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~--~----------------------~~~~~~f~~ 196 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRAS--K----------------------CPASENFPD 196 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEEC--G----------------------CCTTTTS-T
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehh--c----------------------cCcccCCcc
Confidence 456999999999999999999999999999987 345554432 1 013466889
Q ss_pred CCCCeEEEEcCCCcccc
Q 016358 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
..+|+++++. +|.++.
T Consensus 197 ~~LPtllvYk-~G~l~~ 212 (265)
T PF02114_consen 197 KNLPTLLVYK-NGDLIG 212 (265)
T ss_dssp TC-SEEEEEE-TTEEEE
T ss_pred cCCCEEEEEE-CCEEEE
Confidence 9999999996 887764
No 380
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.18 E-value=0.034 Score=42.30 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.3
Q ss_pred EEEEccCCCcccHhhHHHHHH
Q 016358 206 GLYFGAHWCPPCRSFTSQLIE 226 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~ 226 (390)
++.|..+|||+|.+....|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 455889999999987766644
No 381
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.15 E-value=0.042 Score=45.03 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhh
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 232 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 232 (390)
++++|+.|+.++||+|+.+.|.+.++..++.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 5889999999999999999999998877654
No 382
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.11 E-value=0.1 Score=37.05 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc-cc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI 284 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~ 284 (390)
+..|+.+||++|......|++. ++.+..+.++.+.+. ...+.+..|.. ++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence 4568899999999887777542 234455555544211 23455556666 88
Q ss_pred ceEEEE
Q 016358 285 PALVLI 290 (390)
Q Consensus 285 P~~~li 290 (390)
|.+ ++
T Consensus 53 P~v-~i 57 (75)
T cd03418 53 PQI-FI 57 (75)
T ss_pred CEE-EE
Confidence 976 45
No 383
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.09 E-value=0.15 Score=38.89 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=52.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.++++|+=-++.|+........|++.++... +++.+..+.+-... +....+++.|||
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 3788887789999999998888888888765 33778888775432 125789999999
Q ss_pred c-ccceEEEECCCCcEEeeC
Q 016358 282 K-GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 282 ~-~~P~~~lid~~G~v~~~~ 300 (390)
. .-|-++|| ++|++++..
T Consensus 76 ~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp ---SSEEEEE-ETTEEEEEE
T ss_pred CcCCCcEEEE-ECCEEEEEC
Confidence 7 46999999 899998763
No 384
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.02 E-value=0.021 Score=41.25 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=34.2
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016358 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
..|+.+|||+|......|++. ++.+-.+.++.+.+. ..++.+..|..++|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQ 52 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 568899999999888777643 223334444443311 234555667888999
Q ss_pred EEEE
Q 016358 287 LVLI 290 (390)
Q Consensus 287 ~~li 290 (390)
+ ++
T Consensus 53 i-~i 55 (79)
T TIGR02181 53 I-FI 55 (79)
T ss_pred E-EE
Confidence 6 45
No 385
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.01 E-value=0.043 Score=55.63 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=45.7
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+.++..+-.|.+++||+|......+++++.... + ++.-.|... . ..+++++|+
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~--i~~~~i~~~--~---------------------~~~~~~~~~ 526 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--N--VEAEMIDVS--H---------------------FPDLKDEYG 526 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--C--ceEEEEECc--c---------------------cHHHHHhCC
Confidence 455555667789999999988888888877643 2 445444433 2 268899999
Q ss_pred cCCCCeEEE
Q 016358 120 VDRIPSLIP 128 (390)
Q Consensus 120 v~~~P~~~~ 128 (390)
|.++|++++
T Consensus 527 v~~vP~~~i 535 (555)
T TIGR03143 527 IMSVPAIVV 535 (555)
T ss_pred ceecCEEEE
Confidence 999999876
No 386
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=94.92 E-value=0.0099 Score=36.96 Aligned_cols=30 Identities=37% Similarity=0.845 Sum_probs=24.9
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCccccccc
Q 016358 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 385 (390)
Q Consensus 355 ~iC~~C~e~~~~~~~~~~~~~-~~~~~~~~~~ 385 (390)
|.|+.|... .+-+|+|..|. |||...|-..
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCC
Confidence 569999884 46999999995 9999999643
No 387
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=0.19 Score=39.15 Aligned_cols=64 Identities=11% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..|.|+|-|.-.|-|.|..+-..|.++++++++- ..|..+.+|.- ..+-+.|++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l 75 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYEL 75 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhcc
Confidence 4689999999999999999999999999999875 45666666622 467788999
Q ss_pred CCCCeEEEEc
Q 016358 121 DRIPSLIPLA 130 (390)
Q Consensus 121 ~~~P~~~~~d 130 (390)
...|++++|=
T Consensus 76 ~~p~tvmfFf 85 (142)
T KOG3414|consen 76 YDPPTVMFFF 85 (142)
T ss_pred cCCceEEEEE
Confidence 9999887664
No 388
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.85 E-value=0.14 Score=36.30 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=35.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+||+.|++....|++ .++.+..+.++.+.+. ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 346788999999988777764 2344555566654321 34566666777888
Q ss_pred eEEEE
Q 016358 286 ALVLI 290 (390)
Q Consensus 286 ~~~li 290 (390)
.+ ++
T Consensus 54 ~v-~i 57 (73)
T cd03027 54 QI-FF 57 (73)
T ss_pred EE-EE
Confidence 86 44
No 389
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.81 E-value=0.19 Score=43.86 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=74.2
Q ss_pred eeecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCC-cEEEEEEecCCChhHHH-HHHHhCCCcce
Q 016358 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-ELEVIFISFDHDENGFE-EHFKCMPWLAV 104 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~-~~~vv~v~~d~~~~~~~-~~~~~~~~~~~ 104 (390)
....++|.....+..|+++||.+-..+|..|...+..|+.|..++.+.|- ++.++.|+--...+.+. ..++..--..+
T Consensus 11 p~W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~i 90 (238)
T PF04592_consen 11 PPWKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHI 90 (238)
T ss_pred CCceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCC
Confidence 34455566555666899999999999999999999999999999988762 45666666433333332 23332222345
Q ss_pred ecC--hhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016358 105 PFD--ETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 105 ~~~--~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|+. ......+...++-.. =-++|+|+=|++++.
T Consensus 91 pVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 91 PVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 552 234466777776553 467889999998754
No 390
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.71 E-value=0.056 Score=54.32 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=46.6
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+.++.-+..|.+++||+|......+++++.... . ++.-.| |..+. .+++.+|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~--i~~~~i--d~~~~---------------------~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--N--ITHTMI--DGALF---------------------QDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--C--ceEEEE--EchhC---------------------HhHHHhcC
Confidence 456677889999999999998888888877432 2 444444 54443 78889999
Q ss_pred cCCCCeEEE
Q 016358 120 VDRIPSLIP 128 (390)
Q Consensus 120 v~~~P~~~~ 128 (390)
+.++|++++
T Consensus 167 v~~VP~~~i 175 (517)
T PRK15317 167 IMAVPTVFL 175 (517)
T ss_pred CcccCEEEE
Confidence 999999875
No 391
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.59 E-value=0.14 Score=36.20 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=35.2
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+|||+|.+....|++. ++.+..+.++.+.. ...+.+..|...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~----------~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN----------GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------CCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence 4568899999999887766532 23444555554320 13445556888999
Q ss_pred eEEEEC
Q 016358 286 ALVLIG 291 (390)
Q Consensus 286 ~~~lid 291 (390)
.+ ++|
T Consensus 53 ~i-fi~ 57 (72)
T cd03029 53 QV-FID 57 (72)
T ss_pred eE-EEC
Confidence 96 564
No 392
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.57 E-value=0.13 Score=42.71 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=39.5
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016358 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
..+.+-.++++|+.|+...||+|..+.+.+.++.+++-+ ...+.++...+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~--~~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID--PGKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC--CCceEEEEEEcc
Confidence 334445568999999999999999999999999999831 267888888763
No 393
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.53 E-value=0.18 Score=38.07 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCEEEEEEe----cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016358 42 GKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 42 gk~vll~F~----~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
...|+|+-. .+|||+|.+....|.+. + +.+..++++.+.+ ....+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~-------------------~~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPE-------------------IRQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHH-------------------HHHHHHHH
Confidence 455555544 38999999877655542 3 3355566654432 12455556
Q ss_pred cCcCCCCeEEE
Q 016358 118 YRVDRIPSLIP 128 (390)
Q Consensus 118 ~~v~~~P~~~~ 128 (390)
.|...+|.+++
T Consensus 63 tg~~tvP~vfi 73 (97)
T TIGR00365 63 SNWPTIPQLYV 73 (97)
T ss_pred hCCCCCCEEEE
Confidence 67788999854
No 394
>PRK10638 glutaredoxin 3; Provisional
Probab=94.35 E-value=0.21 Score=36.42 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=38.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|..+||++|++....|++ .+ +....++++.+.+ ....+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA-------------------KREEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 456778999999987776664 23 4455566665432 1245556667888998
Q ss_pred EEEEcCCCccc
Q 016358 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 35444
No 395
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.30 E-value=0.018 Score=49.83 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=48.0
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016358 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
-+++.|+|+|||.|....|.|...+.--.+ -++.|-.|.+-. +..+.-+|-+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~-----------------------npgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTT-----------------------NPGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEe-----------------------ccccceeeEEEe
Confidence 377889999999999999998776543322 344444443322 234556788899
Q ss_pred cceEEEECCCCcEEee
Q 016358 284 IPALVLIGPDGKTIST 299 (390)
Q Consensus 284 ~P~~~lid~~G~v~~~ 299 (390)
.|++|=+ ++|.....
T Consensus 95 LptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRY 109 (248)
T ss_pred cceEEEe-eccccccc
Confidence 9999988 78876543
No 396
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.25 E-value=0.064 Score=45.31 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=34.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.+++.++.|+...||+|..+.+.+.++.+++..+ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcCC
Confidence 5899999999999999999999999999988443 55555543
No 397
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.22 E-value=0.082 Score=39.37 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~~----~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
++++|+|+--+ +|||+|.+....|.+. + +.+..++++.+.+ ....+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 45666665433 7999999876655543 2 3355555554432 1256666
Q ss_pred hcCcCCCCeEEE
Q 016358 117 RYRVDRIPSLIP 128 (390)
Q Consensus 117 ~~~v~~~P~~~~ 128 (390)
..|...+|.+++
T Consensus 58 ~~g~~tvP~vfi 69 (90)
T cd03028 58 YSNWPTFPQLYV 69 (90)
T ss_pred HhCCCCCCEEEE
Confidence 678889999743
No 398
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.22 E-value=0.45 Score=42.76 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.2
Q ss_pred hccCCceEE-eCCCCeeeecc-cCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH-HHHHH
Q 016358 180 AIEGRDYVL-SRDHRKITVSE-LAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-KEFDL 255 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~-~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~ 255 (390)
....|++.. +++|+.+++.+ ++||+.||..+. .|-..|.. .......++|.......+++|-|++-.+. ..+..
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~--sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD--SWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH--HHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 445688887 88888888765 488877665544 33222221 12233445554322237999999986544 12111
Q ss_pred -hh-h----cCC---cccccCCch--HHHHHHHHccccc--cceEEEECCCCcEEee
Q 016358 256 -NH-S----IMP---WLAIPYEDR--ARQDLCRIFNIKG--IPALVLIGPDGKTIST 299 (390)
Q Consensus 256 -~~-~----~~~---~~~~~~~~~--~~~~l~~~~~v~~--~P~~~lid~~G~v~~~ 299 (390)
.. . ..| |-.+-+..+ ....+.+.+++.. +..+||+|.+|+|+..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 11 1 112 211111221 2467888888865 5679999999999987
No 399
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.19 Score=38.46 Aligned_cols=63 Identities=24% Similarity=0.465 Sum_probs=36.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+|.|.-+||++|.+....|.+ + + +....+.+|..++ ..+....+.+.-+.+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~---~--v~~~vvELD~~~~----------------g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L---G--VNPKVVELDEDED----------------GSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C---C--CCCEEEEccCCCC----------------cHHHHHHHHHhcCCCCCCE
Confidence 466889999999974443333 2 2 3355556665432 1122244445456678999
Q ss_pred EEEEcCCCccc
Q 016358 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+|+ +|+.+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 776 45544
No 400
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.31 Score=39.32 Aligned_cols=116 Identities=15% Similarity=0.242 Sum_probs=71.0
Q ss_pred hhccCCceEE-eCCC-------Ceeeeccc-CCcEEEE-EEccCCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEec
Q 016358 179 LAIEGRDYVL-SRDH-------RKITVSEL-AGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVST 246 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g-------~~~~l~~~-~gk~vlv-~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-~vv~v~~ 246 (390)
+|.+.|+.++ ...+ ..++..++ +||-|+| ..-+..-|.|-. .+|.+.++++++++ .++ +|+-|++
T Consensus 5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVSV 81 (165)
T COG0678 5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVSV 81 (165)
T ss_pred cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEEe
Confidence 5677777776 2211 22333343 6765544 333445666766 79999999999987 333 4555566
Q ss_pred CCC--HHHHHHhhhcCCcccccCCchHHHHHHHHccc-----------cccceEEEECCCCcEEeeC
Q 016358 247 DRD--HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 247 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~~ 300 (390)
+.. -.+|.+.....+ .+.+..|.+.++.+.+|. ++.....++ .||.|..-.
T Consensus 82 ND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 82 NDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred CcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 542 255666555442 445555667778777653 556667777 788887664
No 401
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=94.08 E-value=0.022 Score=51.84 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=28.8
Q ss_pred ceeecccCC-CCceEEEEcCCCC-CCCccccccc
Q 016358 354 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 385 (390)
Q Consensus 354 ~~iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~~ 385 (390)
.-.||.|.. .-.|-||+|.+|. |||+..|-..
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 467999999 8899999999998 9999999654
No 402
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=0.36 Score=37.60 Aligned_cols=62 Identities=18% Similarity=0.489 Sum_probs=49.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.|.|+|-|.-.|-|.|..+-..|..+.+...+ =..|..+.+|. -+.+.+.|++
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn----fa~Iylvdide-----------------------V~~~~~~~~l 75 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN----FAVIYLVDIDE-----------------------VPDFVKMYEL 75 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhh----ceEEEEEecch-----------------------hhhhhhhhcc
Confidence 38999999999999999999999999998863 23455555553 3677888999
Q ss_pred cccceEEEE
Q 016358 282 KGIPALVLI 290 (390)
Q Consensus 282 ~~~P~~~li 290 (390)
...|++++|
T Consensus 76 ~~p~tvmfF 84 (142)
T KOG3414|consen 76 YDPPTVMFF 84 (142)
T ss_pred cCCceEEEE
Confidence 999987766
No 403
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.95 E-value=0.27 Score=35.76 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=34.5
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|..+||++|......|.+ .++.+-.+.++.+.+. ....+..|...+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~--------------------~~~~~~~g~~~vP 52 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA--------------------AETLRAQGFRQLP 52 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH--------------------HHHHHHcCCCCcC
Confidence 456889999999987766633 3455666666654321 1222335778999
Q ss_pred eEEE
Q 016358 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 vv~i 56 (81)
T PRK10329 53 VVIA 56 (81)
T ss_pred EEEE
Confidence 9854
No 404
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.93 E-value=0.22 Score=35.23 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=33.5
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016358 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
..|..++|++|+.....|.+ .++.+-.+.++.+.+. ...+ +..|...+|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence 46788999999988877753 2344555666654321 1223 2347888999
Q ss_pred EEE
Q 016358 287 LVL 289 (390)
Q Consensus 287 ~~l 289 (390)
+++
T Consensus 52 v~~ 54 (72)
T TIGR02194 52 IVA 54 (72)
T ss_pred EEE
Confidence 644
No 405
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.76 E-value=0.074 Score=39.59 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred CcEEEEEEcc----CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016358 202 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 202 gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
+++|+|+--+ +|||+|.+....|.+.. +.+..+.++.+.+ ....+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~----------i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG----------VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC----------CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 4556664332 79999998777665542 2333444443321 1345666
Q ss_pred HccccccceEEEEC
Q 016358 278 IFNIKGIPALVLIG 291 (390)
Q Consensus 278 ~~~v~~~P~~~lid 291 (390)
..|...+|.+ ++|
T Consensus 58 ~~g~~tvP~v-fi~ 70 (90)
T cd03028 58 YSNWPTFPQL-YVN 70 (90)
T ss_pred HhCCCCCCEE-EEC
Confidence 6788889997 453
No 406
>PRK10638 glutaredoxin 3; Provisional
Probab=93.74 E-value=0.095 Score=38.29 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=37.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|..+||++|++....|++. ++....+.++.+.+ ....+.+..|...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAA-------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence 4567789999999887777643 23344455554321 124455666788899
Q ss_pred eEEEECCCCcEE
Q 016358 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.++ + +|+.+
T Consensus 55 ~i~-~--~g~~i 63 (83)
T PRK10638 55 QIF-I--DAQHI 63 (83)
T ss_pred EEE-E--CCEEE
Confidence 774 4 45554
No 407
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=0.17 Score=43.36 Aligned_cols=94 Identities=23% Similarity=0.437 Sum_probs=65.4
Q ss_pred CCceEEeCCCCeeeeccc-CCcEEEEE---E----ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016358 183 GRDYVLSRDHRKITVSEL-AGKTIGLY---F----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 183 ~p~f~l~~~g~~~~l~~~-~gk~vlv~---F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
..++.++....+.+|+++ .||-.||. + |..-|+.|...+..+.-....+.. .++.++.|+-- ..+++.
T Consensus 52 ~K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~ 127 (247)
T COG4312 52 DKDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELV 127 (247)
T ss_pred cceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHH
Confidence 346666444446788876 66644432 2 344699999999888777677665 77888888743 567888
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccc
Q 016358 255 LNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.+-+.|+|. +|........+-+.|++
T Consensus 128 ~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 128 AYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHHHhcCCc-ceeEeccCccccccccc
Confidence 888899998 88766666666667755
No 408
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=93.56 E-value=0.05 Score=35.96 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=26.9
Q ss_pred CCceeecccCCCC---ceEEEEcCCCCCCCccccccc
Q 016358 352 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEG 385 (390)
Q Consensus 352 ~~~~iC~~C~e~~---~~~~~~~~~~~~~~~~~~~~~ 385 (390)
..+-.|+.|++.- ....|+|..|++..|.+|...
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 4667899999965 455999999999999999764
No 409
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.56 E-value=0.35 Score=36.52 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=34.0
Q ss_pred cEEEEEEc----cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016358 203 KTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+.|+|+-. .+|||+|.+....|.++ ++.+..+.++.+.+. ...+.+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~ 62 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEI-------------------RQGIKEY 62 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence 44555443 38999999877666553 223444455443211 2445556
Q ss_pred ccccccceEEEE
Q 016358 279 FNIKGIPALVLI 290 (390)
Q Consensus 279 ~~v~~~P~~~li 290 (390)
.|...+|.++ |
T Consensus 63 tg~~tvP~vf-i 73 (97)
T TIGR00365 63 SNWPTIPQLY-V 73 (97)
T ss_pred hCCCCCCEEE-E
Confidence 6777889875 5
No 410
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.52 E-value=0.14 Score=43.38 Aligned_cols=95 Identities=13% Similarity=0.309 Sum_probs=68.3
Q ss_pred CCcchhhhhhccCcceeecCCCc--cccCccCCCE-EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016358 12 DSSDFLTVLASEGVEFLLSRQGK--VPLSSCGGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~g~--~~l~~~~gk~-vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
+..+|...+.....+.+...+.. ..+.. .+++ +++.|..............+.+++++++++ +.++.+..+
T Consensus 63 ~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~-- 136 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDAD-- 136 (184)
T ss_dssp SHHHHHHHHHHHSSTSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETT--
T ss_pred CHHHHHHHHHHhccccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehH--
Confidence 44568888888888888888887 33433 4544 777777666667788888888888888765 455555444
Q ss_pred hhHHHHHHHhCCCcceecChhHHHHHHHhcCcC--CCCeEEEEcCCC
Q 016358 89 ENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD--RIPSLIPLASDG 133 (390)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~~~d~~G 133 (390)
.. ..+.+.||+. .+|++++++.+.
T Consensus 137 ~~---------------------~~~~~~~~i~~~~~P~~vi~~~~~ 162 (184)
T PF13848_consen 137 DF---------------------PRLLKYFGIDEDDLPALVIFDSNK 162 (184)
T ss_dssp TT---------------------HHHHHHTTTTTSSSSEEEEEETTT
T ss_pred Hh---------------------HHHHHHcCCCCccCCEEEEEECCC
Confidence 22 5677889997 899999999544
No 411
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.45 E-value=0.14 Score=51.36 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=46.4
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016358 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.+.++.-+..|.++.||+|......+++++.... + ++.-. +|..+. .+++.+|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~--i~~~~--id~~~~---------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--N--ISHTM--IDGALF---------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--C--ceEEE--EEchhC---------------------HHHHHhc
Confidence 3456777889999999999988888877766533 1 44333 444432 6888999
Q ss_pred CcCCCCeEEE
Q 016358 119 RVDRIPSLIP 128 (390)
Q Consensus 119 ~v~~~P~~~~ 128 (390)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999876
No 412
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.05 E-value=0.014 Score=50.49 Aligned_cols=66 Identities=24% Similarity=0.494 Sum_probs=47.2
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016358 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
+++.|+++|||-|....|.|...+.--.+-+ +.|-.|.+. .+ .-+.-+|-++..|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt--~n---------------------pgLsGRF~vtaLp 96 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVT--TN---------------------PGLSGRFLVTALP 96 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEE--ec---------------------cccceeeEEEecc
Confidence 4788999999999999999988777544444 444444332 11 3555678889999
Q ss_pred eEEEEcCCCccc
Q 016358 125 SLIPLASDGTLI 136 (390)
Q Consensus 125 ~~~~~d~~G~i~ 136 (390)
+++=+. +|...
T Consensus 97 tIYHvk-DGeFr 107 (248)
T KOG0913|consen 97 TIYHVK-DGEFR 107 (248)
T ss_pred eEEEee-ccccc
Confidence 999774 78665
No 413
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=0.18 Score=43.33 Aligned_cols=89 Identities=17% Similarity=0.316 Sum_probs=62.9
Q ss_pred eecCCCccccCcc-CCC--EEEEEE-ecC----CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016358 28 LLSRQGKVPLSSC-GGK--TICLFF-SAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 28 l~~~~g~~~l~~~-~gk--~vll~F-~~~----~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+-..+|+.+|+++ .|+ .++--| ++| .|+.|...+-.+......+...+ +.+++|+-- ..+.+..|.+.|
T Consensus 57 Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~rm 133 (247)
T COG4312 57 FETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKRRM 133 (247)
T ss_pred eecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHHhc
Confidence 4566777888886 565 333322 344 69999999999988888887776 778888754 455688899999
Q ss_pred CCcceecChhHHHHHHHhcCc
Q 016358 100 PWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|. +|+.......+-..|++
T Consensus 134 GW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 134 GWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred CCc-ceeEeccCccccccccc
Confidence 998 77755544555566655
No 414
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=92.86 E-value=0.039 Score=36.31 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=21.7
Q ss_pred CceeecccCCC---CceEEEEcCCCCCCCc
Q 016358 353 KAYVCDCCKMR---GRFWAFSCDVCNYDLH 379 (390)
Q Consensus 353 ~~~iC~~C~e~---~~~~~~~~~~~~~~~~ 379 (390)
-.|+|.+|+.. -.+=..+|.+|+|.+-
T Consensus 19 miYiCgdC~~en~lk~~D~irCReCG~RIl 48 (62)
T KOG3507|consen 19 MIYICGDCGQENTLKRGDVIRCRECGYRIL 48 (62)
T ss_pred EEEEeccccccccccCCCcEehhhcchHHH
Confidence 36999999984 4566899999999763
No 415
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.47 E-value=0.2 Score=42.31 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS 245 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~ 245 (390)
.++++|+.|+...||+|+.+.+.+..+.++++ .++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcC
Confidence 46899999999999999999999999999885 445554444
No 416
>PRK10824 glutaredoxin-4; Provisional
Probab=92.09 E-value=0.41 Score=37.34 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016358 41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~~----~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
....|+|+--+ ||||+|.+....|.++ + ++.-.+.++.+.+ . ...+.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~--i~~~~idi~~d~~-~------------------~~~l~~ 64 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC-------G--ERFAYVDILQNPD-I------------------RAELPK 64 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-------C--CCceEEEecCCHH-H------------------HHHHHH
Confidence 34555555443 6999999877665553 2 2233455554432 1 134444
Q ss_pred hcCcCCCCeEEEEcCCCccc
Q 016358 117 RYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~ 136 (390)
.-|-..+|.+++ +|+.+
T Consensus 65 ~sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 65 YANWPTFPQLWV---DGELV 81 (115)
T ss_pred HhCCCCCCeEEE---CCEEE
Confidence 457788999776 45444
No 417
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=92.04 E-value=0.13 Score=33.27 Aligned_cols=34 Identities=26% Similarity=0.621 Sum_probs=28.0
Q ss_pred CceeecccCCCCce---EEEEcCCCCCCCcccccccc
Q 016358 353 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 353 ~~~iC~~C~e~~~~---~~~~~~~~~~~~~~~~~~~~ 386 (390)
.+..|.+|.+.-.+ ..|.|..|++-.|.+|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 45569999995543 79999999999999998753
No 418
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.89 E-value=0.29 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=53.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
..-||+.||-+.-..|+-+-..|..|+..+-. ..++-|+... ..-++.+++|
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----TrFikvnae~-----------------------~PFlv~kL~I 135 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----TRFIKVNAEK-----------------------APFLVTKLNI 135 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhccc-----ceEEEEeccc-----------------------Cceeeeeeee
Confidence 45689999999888999999999999988743 3455555443 2567788999
Q ss_pred cccceEEEECCCCcEEee
Q 016358 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.-+|++.++ ++|+.+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 66665544
No 419
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.63 E-value=2.3 Score=33.70 Aligned_cols=43 Identities=12% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
+.|.|+|-|.-.|=+.|..+-..|.++++++++- ..|..+.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcc
Confidence 5799999999999999999999999999999875 556666666
No 420
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.83 Score=34.93 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=34.7
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+|.|.-+||++|.+....|. .+. ....|+-+.-+.+..+++ ..+.+.-|.+.+|
T Consensus 16 VVifSKs~C~~c~~~k~ll~----~~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLS----DLG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVP 69 (104)
T ss_pred EEEEECCcCchHHHHHHHHH----hCC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCC
Confidence 34589999999998443333 333 344555554443332322 3333444556788
Q ss_pred eEEEECCCCcEE
Q 016358 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.+|+ +|+-+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8654 35544
No 421
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.39 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.0
Q ss_pred EEEEccCCCcccHhhHHHHH
Q 016358 206 GLYFGAHWCPPCRSFTSQLI 225 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~ 225 (390)
+..|.-++||+|++....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678899999998776665
No 422
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.31 Score=49.18 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHH---HHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQ---LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~---l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-++|||+|....+||..|.-|... =.++++.+++. +|-|.+|.++. |-.....
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Y 96 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLY 96 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHH
Confidence 34445689999999999999999877642 13445555544 89999997663 1111122
Q ss_pred HHHHHhc-CcCCCCeEEEEcCCCcccc
Q 016358 112 KKLRIRY-RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 112 ~~l~~~~-~v~~~P~~~~~d~~G~i~~ 137 (390)
..+++.. |-.+.|..+++-|+|+...
T Consensus 97 m~~~q~~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 97 MNASQAITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred HHHHHHhccCCCCceeEEECCCCceee
Confidence 3444443 3457999999999998873
No 423
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=3.1 Score=37.99 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=58.7
Q ss_pred cccCCcEEEEEEccC----CCcccHhhHHHHHHHHHHhhcc--cCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016358 198 SELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTT--ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~--~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
...++=.+++.|.|. -|.-|+.+..+++-+++.+... ..++-++.+-.+|-++
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--------------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--------------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------
Confidence 344555688888875 6999999999999999987653 2233466666666543
Q ss_pred HHHHHHHccccccceEEEECC-CCcEE
Q 016358 272 RQDLCRIFNIKGIPALVLIGP-DGKTI 297 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~-~G~v~ 297 (390)
..++.+.+++++.|+++++.| .|+..
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 478889999999999999965 46655
No 424
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.03 E-value=0.32 Score=42.39 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.8
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEe
Q 016358 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFIS 84 (390)
Q Consensus 40 ~~gk~vll~F~~~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~ 84 (390)
..|++.++.|+...||||..+.+.+ ..+.+.+.++ +.++.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~ 79 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYH 79 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEec
Confidence 4688999999999999999999866 6667766544 4455443
No 425
>PRK10824 glutaredoxin-4; Provisional
Probab=89.81 E-value=0.43 Score=37.22 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=17.0
Q ss_pred cEEEEEEcc----CCCcccHhhHHHHHHH
Q 016358 203 KTIGLYFGA----HWCPPCRSFTSQLIEV 227 (390)
Q Consensus 203 k~vlv~F~a----~wC~~C~~~~p~l~~l 227 (390)
..|+|+--+ +|||+|++....|.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 445554443 6999999877766554
No 426
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.50 E-value=0.42 Score=40.33 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+..-|++-||-+.-..|+-+-..|+.++.++ ++.-+|.++.... .-++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h------~eTrFikvnae~~---------------------PFlv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRH------VETRFIKVNAEKA---------------------PFLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhc------ccceEEEEecccC---------------------ceeeeeeee
Confidence 5678899999998889999999999998876 4467777775443 467789999
Q ss_pred CCCCeEEEEcCCCccc
Q 016358 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.-+|+++++. +|..+
T Consensus 136 kVLP~v~l~k-~g~~~ 150 (211)
T KOG1672|consen 136 KVLPTVALFK-NGKTV 150 (211)
T ss_pred eEeeeEEEEE-cCEEE
Confidence 9999999995 88765
No 427
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.31 E-value=0.87 Score=33.00 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=41.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+.|+-|......|.++... .+ +++..|+++.+ ..+.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~--~~l~~vDI~~d-----------------------~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FP--FELEEVDIDED-----------------------PELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---ST--CEEEEEETTTT-----------------------HHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cC--ceEEEEECCCC-----------------------HHHHHHhcC-CCCE
Confidence 6788999999999877777665432 22 78999988844 467889995 7898
Q ss_pred EEEEc
Q 016358 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 76654
No 428
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.77 E-value=0.98 Score=43.86 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh
Q 016358 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (390)
Q Consensus 46 ll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~ 89 (390)
++.|..+|||+|.+....|.+ .| +....|++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g--i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND--IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC--CCeEEEECCCCh
Confidence 667899999999976655444 34 445566666444
No 429
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=1.1 Score=31.43 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=43.0
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh---cCCcccccCCchHHHHHHHHccccc
Q 016358 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+.|++..||.|......|..+. -+++.|- +-.+-+.+++|+. +++ .-+-.+..|--+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~Ve--It~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG 64 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVE--ITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG 64 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeee--hhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence 5689999999987766665542 2333443 3445556666655 222 123345677889
Q ss_pred cceEEEECCCCcEEe
Q 016358 284 IPALVLIGPDGKTIS 298 (390)
Q Consensus 284 ~P~~~lid~~G~v~~ 298 (390)
+|.+.+ .+|+++.
T Consensus 65 IPall~--~d~~vVl 77 (85)
T COG4545 65 IPALLT--DDGKVVL 77 (85)
T ss_pred ceEEEe--CCCcEEE
Confidence 998654 5777764
No 430
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=88.37 E-value=0.2 Score=32.15 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=27.5
Q ss_pred CCceeecccCCCCce--EEEEcCCCCCCCcccccccc
Q 016358 352 AKAYVCDCCKMRGRF--WAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 352 ~~~~iC~~C~e~~~~--~~~~~~~~~~~~~~~~~~~~ 386 (390)
..+..|..|.+.-.+ -.|+|..|++-.|.+|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 345679999995443 37999999999999998643
No 431
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=1.3 Score=31.08 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=44.9
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH---hCCCcceecChhHHHHHHHhcCcCCC
Q 016358 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 47 l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+.|++..||.|-.+...|.++ + +..-+|.+..+-..+++|+. +++ .-.-.+..|.-++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~--v~yd~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiGI 65 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------N--VDYDFVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIGI 65 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------C--CCceeeehhhhhhhHHHHHhhhccch----------hHHhhhhcCcccc
Confidence 568899999998766555443 2 33556666666677888877 222 1123356778899
Q ss_pred CeEEEEcCCCccc
Q 016358 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|.+.+= +|+++
T Consensus 66 Pall~~--d~~vV 76 (85)
T COG4545 66 PALLTD--DGKVV 76 (85)
T ss_pred eEEEeC--CCcEE
Confidence 997764 56665
No 432
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=2.1 Score=34.64 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=54.0
Q ss_pred cCCCc--cccCcc-CCCEEEEEEe--cCCChhhhh-hHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc-
Q 016358 30 SRQGK--VPLSSC-GGKTICLFFS--ANWCRPCKT-FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL- 102 (390)
Q Consensus 30 ~~~g~--~~l~~~-~gk~vll~F~--~~~C~~C~~-~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~- 102 (390)
+..|. ++..++ +||.|+| |. +-..|.|.. ..|.+.+++++++.+|.+ +|+.|++| |.-.+.+|.+..+.-
T Consensus 22 ~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD-~I~cVSVN-D~FVm~AWak~~g~~~ 98 (165)
T COG0678 22 TADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGVD-EIYCVSVN-DAFVMNAWAKSQGGEG 98 (165)
T ss_pred cCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCCc-eEEEEEeC-cHHHHHHHHHhcCCCc
Confidence 44555 555554 6777555 44 334567744 789999999999988733 67777777 444455666654433
Q ss_pred ceecChhHHHHHHHhcC
Q 016358 103 AVPFDETLHKKLRIRYR 119 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~ 119 (390)
.+.+..|.+.++.+..|
T Consensus 99 ~I~fi~Dg~geFTk~~G 115 (165)
T COG0678 99 NIKFIPDGNGEFTKAMG 115 (165)
T ss_pred cEEEecCCCchhhhhcC
Confidence 45555555556666555
No 433
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=87.29 E-value=3.4 Score=32.73 Aligned_cols=60 Identities=22% Similarity=0.489 Sum_probs=43.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.|+|+|-|.-.|-+.|..+-..|.+++++.+. -..|..+.++.- +.+-+.|.+
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~----~a~IY~vDi~~V-----------------------pdfn~~yel 72 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN----FAVIYLVDIDEV-----------------------PDFNQMYEL 72 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT----TEEEEEEETTTT-----------------------HCCHHHTTS
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc----ceEEEEEEcccc-----------------------hhhhccccc
Confidence 48999999999999999999999999998863 345556666632 445667777
Q ss_pred cccceEEE
Q 016358 282 KGIPALVL 289 (390)
Q Consensus 282 ~~~P~~~l 289 (390)
. .|.+++
T Consensus 73 ~-dP~tvm 79 (133)
T PF02966_consen 73 Y-DPCTVM 79 (133)
T ss_dssp --SSEEEE
T ss_pred C-CCeEEE
Confidence 7 676443
No 434
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.91 E-value=0.73 Score=40.16 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEe
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS 245 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~ 245 (390)
.|++.|+.|+.-.||+|..+.+.+ ..+.+.+. .++.++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence 468889999999999999998866 67777775 444454433
No 435
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=4.7 Score=36.86 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=57.9
Q ss_pred CccCCCEEEEEEecC----CChhhhhhHHHHHHHHHHHhhCCCc---EEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016358 38 SSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTE---LEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 38 ~~~~gk~vll~F~~~----~C~~C~~~~p~l~~~~~~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
...++-.+++.|.|. .|.-|.....++.-++.-+...+.. -.+.+-.+|-++.
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-------------------- 115 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-------------------- 115 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc--------------------
Confidence 445677888889865 5999999888888888877654311 3466666665553
Q ss_pred HHHHHHhcCcCCCCeEEEEcCC-Cccc
Q 016358 111 HKKLRIRYRVDRIPSLIPLASD-GTLI 136 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~~-G~i~ 136 (390)
.++.+++++...|+++++.|. |.+.
T Consensus 116 -p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 -PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred -HHHHHHhcccCCCeEEEeCCCccccc
Confidence 788999999999999999754 4444
No 436
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=86.02 E-value=4.1 Score=31.53 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC----CCeEEEEcC
Q 016358 57 CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR----IPSLIPLAS 131 (390)
Q Consensus 57 C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~~~d~ 131 (390)
-......+.+++++++ ++ +.+|.+|.+.. ....+.||+.. .|.+.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK-----LNFAVADKEDF---------------------SHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe-----EEEEEEcHHHH---------------------HHHHHHcCCCcccCCCCEEEEEeC
Confidence 3567788999999998 44 66666664443 34778899974 999999986
Q ss_pred CC
Q 016358 132 DG 133 (390)
Q Consensus 132 ~G 133 (390)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 54
No 437
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=85.93 E-value=0.6 Score=29.61 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.7
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCcccccc
Q 016358 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 355 ~iC~~C~e~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
|.|..|...-+.=+|+|..+. |||.+.|=.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHh
Confidence 579999998898999999987 999999944
No 438
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=85.77 E-value=0.97 Score=34.69 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=21.0
Q ss_pred HHHHHHHccccccceEEEECCCCcEEee
Q 016358 272 RQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
...+..+||+..+|+++++ ++|+.+..
T Consensus 71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 4789999999999999999 55555444
No 439
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=85.74 E-value=7.3 Score=31.11 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc--ccceEEEECCCCc
Q 016358 219 SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK 295 (390)
Q Consensus 219 ~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~ 295 (390)
.....|.+++++|++ ..+.++++..+.. ..+.+.||+. ++|++++++.++.
T Consensus 41 ~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 41 KYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEEecccC
Confidence 446788899999984 3377777776653 4488899985 4899999987654
No 440
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.58 E-value=7.3 Score=30.52 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=48.6
Q ss_pred ecccCCcEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016358 197 VSELAGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
|++++++.-+|..+|+. -+.=......|.+....+.+ .++.++.+.-+..... .-+........
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~~~~-----------~~~~~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGARSP-----------GKPLSPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCccccc-----------cCcCCHHHHHH
Confidence 45555543333334432 22234445555554445544 7777777744332100 01112223467
Q ss_pred HHHHcccc-ccceEEEECCCCcEEee
Q 016358 275 LCRIFNIK-GIPALVLIGPDGKTIST 299 (390)
Q Consensus 275 l~~~~~v~-~~P~~~lid~~G~v~~~ 299 (390)
+.+.|++. +.-+++||++||.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 88889875 33678999999999887
No 441
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=84.05 E-value=4 Score=31.64 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.6
Q ss_pred ceEEEECCCCcEEeeC
Q 016358 285 PALVLIGPDGKTISTN 300 (390)
Q Consensus 285 P~~~lid~~G~v~~~~ 300 (390)
+..+|||++|+|++.+
T Consensus 96 GG~fv~d~~g~v~~~h 111 (115)
T PF13911_consen 96 GGTFVFDPGGKVLYEH 111 (115)
T ss_pred CeEEEEcCCCeEEEEE
Confidence 4477888888887763
No 442
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.04 E-value=2.3 Score=30.78 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=41.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016358 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|..+.|+-|......|.++... ..+.+..|.++.+ ..+.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence 6778899999999887777665333 4578888988854 568889995 789
Q ss_pred eEEEEC
Q 016358 286 ALVLIG 291 (390)
Q Consensus 286 ~~~lid 291 (390)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 866554
No 443
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=83.66 E-value=0.3 Score=44.58 Aligned_cols=34 Identities=21% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCceeecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 351 MAKAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 351 ~~~~~iC~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
...+..|++|.- .-.|++|+|..|. |.|++.|-.
T Consensus 237 v~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfw 272 (434)
T KOG4301|consen 237 VFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW 272 (434)
T ss_pred cCCCccCcceecccccchhhhHhhcCCccccchhhc
Confidence 355678999987 7899999999998 999999965
No 444
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=83.31 E-value=3.6 Score=32.88 Aligned_cols=67 Identities=9% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCEEEEEEecC--CCh-hh-hhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016358 42 GKTICLFFSAN--WCR-PC-KTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 42 gk~vll~F~~~--~C~-~C-~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
...-+|.|.-. .|. -+ ......|.+++++++++. +.+++++.+ .. ..+.+.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~--~~---------------------~~~~~~ 74 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAG--AQ---------------------LDLEEA 74 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCc--cc---------------------HHHHHH
Confidence 35666777532 232 23 445678999999998765 455555444 32 358888
Q ss_pred cCcC--CCCeEEEEcCCC
Q 016358 118 YRVD--RIPSLIPLASDG 133 (390)
Q Consensus 118 ~~v~--~~P~~~~~d~~G 133 (390)
||+. .+|++++++.++
T Consensus 75 fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 75 LNIGGFGYPAMVAINFRK 92 (130)
T ss_pred cCCCccCCCEEEEEeccc
Confidence 9985 599999998654
No 445
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=82.75 E-value=1.8 Score=42.13 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.6
Q ss_pred EEEEccCCCcccHhhHHHHHH
Q 016358 206 GLYFGAHWCPPCRSFTSQLIE 226 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~ 226 (390)
|+.|..+|||+|.+....|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567899999999987666644
No 446
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=82.13 E-value=7.2 Score=30.18 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=35.4
Q ss_pred cHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc----cceEEEECC
Q 016358 217 CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGP 292 (390)
Q Consensus 217 C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~ 292 (390)
-......+.+++++|++ .+ +.++.+|.+. ...+.+.||+.. .|.+.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~---gk--i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPD---RK--LNFAVADKED---------------------FSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcC---Ce--EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCEEEEEeC
Confidence 35567788888888871 13 5555555432 234778899974 899999986
Q ss_pred CC
Q 016358 293 DG 294 (390)
Q Consensus 293 ~G 294 (390)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 55
No 447
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=4.8 Score=32.89 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=58.9
Q ss_pred eeeeccc-CCcEEEE-EEccCCCcc-cHhhHHHHHHHHHHhhcccCCce-EEEEEecCCC--HHHHHHhhhcCCcccccC
Q 016358 194 KITVSEL-AGKTIGL-YFGAHWCPP-CRSFTSQLIEVYNELKTTANHCF-EVVLVSTDRD--HKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 194 ~~~l~~~-~gk~vlv-~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~--~~~~~~~~~~~~~~~~~~ 267 (390)
+++++++ +||-++| =.-+..-|. |+...|-+.+-.++++. .++ +|+-|+++.. ...|.+.+.... .+.+
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks---KGVd~iicvSVnDpFv~~aW~k~~g~~~--~V~f 108 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS---KGVDEIICVSVNDPFVMKAWAKSLGAND--HVKF 108 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHh---cCCcEEEEEecCcHHHHHHHHhhcCccc--eEEE
Confidence 7788876 6755544 223444556 67889999999999986 444 4556666642 245555543322 2333
Q ss_pred CchHHHHHHHHccc-----------cccceEEEECCCCcEEeeC
Q 016358 268 EDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 268 ~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~~ 300 (390)
..|.+.++.+.+|+ ++-...+++ .||+|...+
T Consensus 109 ~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 109 VADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred EecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 44444455544443 333344555 688888775
No 448
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.55 E-value=3.8 Score=28.51 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=35.3
Q ss_pred EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceE
Q 016358 208 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 287 (390)
Q Consensus 208 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 287 (390)
.|+..||++|.+..-.|.+. + -.++++.+..... ..++.+......+|++
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----g---l~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L 52 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----G---ITVELREVELKNK----------------------PAEMLAASPKGTVPVL 52 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----C---CCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEE
Confidence 46789999999876555433 1 4456666655322 1344444556778887
Q ss_pred EEECCCCcEEe
Q 016358 288 VLIGPDGKTIS 298 (390)
Q Consensus 288 ~lid~~G~v~~ 298 (390)
. +.+|..+.
T Consensus 53 ~--~~~g~~l~ 61 (71)
T cd03060 53 V--LGNGTVIE 61 (71)
T ss_pred E--ECCCcEEe
Confidence 4 34566654
No 449
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=78.89 E-value=0.49 Score=43.02 Aligned_cols=74 Identities=12% Similarity=0.299 Sum_probs=50.8
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
.+|-+-||++|||..+...|.++-.+..|.. ++..+ ++. +.. -..+...||+.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-----i~h~~--vee-------~~~-------------lpsv~s~~~~~ 129 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-----IQHFA--VEE-------SQA-------------LPSVFSSYGIH 129 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-----ccccc--HHH-------Hhh-------------cccchhccccc
Confidence 4677889999999999999998888777752 11221 221 111 23566788888
Q ss_pred ccceEEEECCCCcEEeeCcch
Q 016358 283 GIPALVLIGPDGKTISTNGKE 303 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~~ 303 (390)
+.|+..+.+..-..+++..+.
T Consensus 130 ~~ps~~~~n~t~~~~~~~~r~ 150 (319)
T KOG2640|consen 130 SEPSNLMLNQTCPASYRGERD 150 (319)
T ss_pred cCCcceeeccccchhhccccc
Confidence 888888887777766664443
No 450
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=78.88 E-value=3.6 Score=31.58 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=41.4
Q ss_pred CCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016358 42 GKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~~~~--C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+...+++|.+.. ++-+....-.+-++.+.+... +....|. .. ....+..+||
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~--~~---------------------~e~~L~~r~g 79 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVA--RA---------------------AERALAARFG 79 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEE--HH---------------------HHHHHHHHHT
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCc---cceEEEC--ch---------------------hHHHHHHHhC
Confidence 444455554321 234555555666777777665 4443333 12 2379999999
Q ss_pred cCCCCeEEEEcCCCccc
Q 016358 120 VDRIPSLIPLASDGTLI 136 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~ 136 (390)
+...|+++++. +|+.+
T Consensus 80 v~~~PaLvf~R-~g~~l 95 (107)
T PF07449_consen 80 VRRWPALVFFR-DGRYL 95 (107)
T ss_dssp -TSSSEEEEEE-TTEEE
T ss_pred CccCCeEEEEE-CCEEE
Confidence 99999999995 77655
No 451
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=78.40 E-value=10 Score=29.29 Aligned_cols=51 Identities=8% Similarity=0.063 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHH---HhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC--CCeEEEEcC
Q 016358 57 CKTFTPQLVQLYDT---LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR--IPSLIPLAS 131 (390)
Q Consensus 57 C~~~~p~l~~~~~~---~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~~~d~ 131 (390)
-......+.+++++ ++++ +.+|.+|.+.. ....+.||+.. +|.+.+.+.
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~~---------------------~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA-----INFLTADGDKF---------------------RHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce-----EEEEEEechHh---------------------hhHHHHcCCCHhHCCEEEEEcc
Confidence 36677889999999 7765 55666664443 34778899986 899999985
Q ss_pred CC
Q 016358 132 DG 133 (390)
Q Consensus 132 ~G 133 (390)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 44
No 452
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=77.10 E-value=20 Score=29.54 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=60.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHH-HhhCCCcEEEEE-EecCCC--------hhHHHHHHHhCCCcce
Q 016358 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT-LRTRGTELEVIF-ISFDHD--------ENGFEEHFKCMPWLAV 104 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~-~~~~~~~~~vv~-v~~d~~--------~~~~~~~~~~~~~~~~ 104 (390)
.+...+.||+.+|..-|---..=....|.+..+.+. |... .++... |+.|+. .++.+.--++.||..+
T Consensus 30 W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~ 107 (160)
T PF09695_consen 30 WNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQF 107 (160)
T ss_pred cCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEE
Confidence 556678899999888865544444455555555444 4332 244443 345431 2233444446677766
Q ss_pred ecChhHHHHHHHhcCcCC-CCeEEEEcCCCccccc
Q 016358 105 PFDETLHKKLRIRYRVDR-IPSLIPLASDGTLIEE 138 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~-~P~~~~~d~~G~i~~~ 138 (390)
-.|.+ +.+.+.+++.. --.++++|++|++...
T Consensus 108 vlD~~--G~~~~aW~L~~~~SaiiVlDK~G~V~F~ 140 (160)
T PF09695_consen 108 VLDSN--GVVRKAWQLQEESSAIIVLDKQGKVQFV 140 (160)
T ss_pred EEcCC--CceeccccCCCCCceEEEEcCCccEEEE
Confidence 55544 46677777653 4678899999988743
No 453
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.08 E-value=3.3 Score=31.93 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=58.4
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCC---cccccCCchHHHHHHHHc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP---WLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 279 (390)
|.+++.|.-|-|+-|......|.++.++|. |+-|++=. ++...+ .+...-.......+.+.+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~--------ilrVNIlS-------fFsK~g~v~~lg~d~~y~lInn~~~~l 66 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD--------ILRVNILS-------FFSKDGQVKVLGMDKGYTLINNFFKHL 66 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc--------EEEEEeee-------eeccCCceEEEecccceehHHHHHHhh
Confidence 568899999999999999999988877774 55554311 000000 000000111245666666
Q ss_pred cccccceEEEECC-CCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016358 280 NIKGIPALVLIGP-DGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 280 ~v~~~P~~~lid~-~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
| ..+=.++=.|| .|++.+.+-+..... +.. ....-..++|++.++.
T Consensus 67 g-ne~v~lfKydp~t~qmA~V~i~k~~~l-a~i--d~~~v~~d~L~~~Ie~ 113 (123)
T PHA03075 67 G-NEYVSLFKYDPETKQMAFVDISKFLVL-AQI--DKSFVDLDQLKEEIEK 113 (123)
T ss_pred c-ccEEEEEEEcCCCCcEEEEehhHeeee-eec--chhhcCHHHHHHHHHh
Confidence 6 44445555664 577766654332211 111 1122346777777665
No 454
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=76.61 E-value=0.47 Score=46.48 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=37.0
Q ss_pred ccCCCccceeec-CCCceeecccCCCCceE---EEEcCCCCCCCccccccccCC
Q 016358 339 KDVKHEHELKLD-MAKAYVCDCCKMRGRFW---AFSCDVCNYDLHPKCVEGINL 388 (390)
Q Consensus 339 ~~~~h~~~l~l~-~~~~~iC~~C~e~~~~~---~~~~~~~~~~~~~~~~~~~~~ 388 (390)
.-..+||.|... .-.+--|+.|+|.=.|- .-+|+-|+.+.|.+||...-.
T Consensus 140 d~~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipN 193 (888)
T KOG4236|consen 140 DFQIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPN 193 (888)
T ss_pred ceeeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCC
Confidence 445667777765 23445599999976665 468999999999999986443
No 455
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.59 E-value=0.63 Score=44.21 Aligned_cols=30 Identities=33% Similarity=0.764 Sum_probs=24.5
Q ss_pred ceeecccCC--CCceE-EEEcCCCCCCCccccc
Q 016358 354 AYVCDCCKM--RGRFW-AFSCDVCNYDLHPKCV 383 (390)
Q Consensus 354 ~~iC~~C~e--~~~~~-~~~~~~~~~~~~~~~~ 383 (390)
+--|++|+. =|.|- .|||++|.|-+|.+|-
T Consensus 56 PTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrCh 88 (683)
T KOG0696|consen 56 PTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCH 88 (683)
T ss_pred CchhhhhhhheeccccCceeeeEEeehhhhhhc
Confidence 455999998 44444 7999999999999994
No 456
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=75.96 E-value=11 Score=35.21 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=46.0
Q ss_pred CcEEEEEEccCCCcccHhhHH------HHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHH
Q 016358 202 GKTIGLYFGAHWCPPCRSFTS------QLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 275 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (390)
-+.++|+|+.+--. -+.... .+-+|..+.- ...++.+..|.+..+ ..+
T Consensus 51 yd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVl--E~~gigfg~VD~~Kd-----------------------~kl 104 (383)
T PF01216_consen 51 YDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVL--EDKGIGFGMVDSKKD-----------------------AKL 104 (383)
T ss_dssp -SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHC--GGCTEEEEEEETTTT-----------------------HHH
T ss_pred hcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhc--cccCcceEEeccHHH-----------------------HHH
Confidence 36788888877532 222222 1233444433 237888888887764 789
Q ss_pred HHHccccccceEEEECCCCcEEeeCc
Q 016358 276 CRIFNIKGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 276 ~~~~~v~~~P~~~lid~~G~v~~~~g 301 (390)
++++|+...++++++ ++|+++..+|
T Consensus 105 AKKLgv~E~~SiyVf-kd~~~IEydG 129 (383)
T PF01216_consen 105 AKKLGVEEEGSIYVF-KDGEVIEYDG 129 (383)
T ss_dssp HHHHT--STTEEEEE-ETTEEEEE-S
T ss_pred HHhcCccccCcEEEE-ECCcEEEecC
Confidence 999999999999999 8888887755
No 457
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=75.87 E-value=1.8 Score=33.34 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=28.8
Q ss_pred CceeecccCCCCceEEEEcCC--CCCCCccccccccC
Q 016358 353 KAYVCDCCKMRGRFWAFSCDV--CNYDLHPKCVEGIN 387 (390)
Q Consensus 353 ~~~iC~~C~e~~~~~~~~~~~--~~~~~~~~~~~~~~ 387 (390)
....|..|+.. .|-.-+|.. |+-.+|+.||+...
T Consensus 54 ~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 54 FKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred cCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 46789999998 566889998 99999999998643
No 458
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.52 E-value=8.1 Score=31.60 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=17.8
Q ss_pred CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh
Q 016358 53 WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (390)
Q Consensus 53 ~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~ 89 (390)
+|++|.+....|+++ + +.+.-++++.+.
T Consensus 15 t~~~C~~ak~iL~~~-------~--V~~~e~DVs~~~ 42 (147)
T cd03031 15 TFEDCNNVRAILESF-------R--VKFDERDVSMDS 42 (147)
T ss_pred cChhHHHHHHHHHHC-------C--CcEEEEECCCCH
Confidence 899999766655542 3 445556666543
No 459
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=74.99 E-value=8.4 Score=35.89 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=47.6
Q ss_pred eecCCCc---cccCcc-------CCCEEEEEEecCCCh--hhhhhH---HHHHHHHHHH-hhCCCcEEEEEEecCCChhH
Q 016358 28 LLSRQGK---VPLSSC-------GGKTICLFFSANWCR--PCKTFT---PQLVQLYDTL-RTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 28 l~~~~g~---~~l~~~-------~gk~vll~F~~~~C~--~C~~~~---p~l~~~~~~~-~~~~~~~~vv~v~~d~~~~~ 91 (390)
++.-+|+ +.|++. +-+.++|+|+.+--. .-++.. ..+-+++.+. .+++ +.+..|+...+
T Consensus 27 fP~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~g--igfg~VD~~Kd--- 101 (383)
T PF01216_consen 27 FPEYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKG--IGFGMVDSKKD--- 101 (383)
T ss_dssp SSS-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCT--EEEEEEETTTT---
T ss_pred CccCCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccC--cceEEeccHHH---
Confidence 4455555 555552 346888899877633 222222 3344555555 3445 66666655432
Q ss_pred HHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016358 92 FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
.++++++|+...+++.++. +|+++.
T Consensus 102 --------------------~klAKKLgv~E~~SiyVfk-d~~~IE 126 (383)
T PF01216_consen 102 --------------------AKLAKKLGVEEEGSIYVFK-DGEVIE 126 (383)
T ss_dssp --------------------HHHHHHHT--STTEEEEEE-TTEEEE
T ss_pred --------------------HHHHHhcCccccCcEEEEE-CCcEEE
Confidence 6899999999999999996 776663
No 460
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=8.1 Score=34.40 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=36.3
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhC
Q 016358 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~ 74 (390)
....++. +.+....++++++.|....||+|....+.+.+.+....+.
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 3455566 6666667799999999999999999888888866665543
No 461
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=73.71 E-value=1.8 Score=23.02 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=6.7
Q ss_pred EEcCCCCCCC
Q 016358 369 FSCDVCNYDL 378 (390)
Q Consensus 369 ~~~~~~~~~~ 378 (390)
|+|..|+|--
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 8999999864
No 462
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=73.21 E-value=28 Score=27.18 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=52.5
Q ss_pred cCccCCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016358 37 LSSCGGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 37 l~~~~gk~vll~F~~~~--C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
|+++.++.-+|..+||. -+.=+.+...|.+....+.++. +.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 56666665555555553 3444556666666666676665 5555553332221 0112234455788
Q ss_pred HHhcCcC-CCCeEEEEcCCCccccc
Q 016358 115 RIRYRVD-RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~-~~P~~~~~d~~G~i~~~ 138 (390)
.+.|++. +.-++++++++|.+..+
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEe
Confidence 8999975 34688999999988754
No 463
>PRK12496 hypothetical protein; Provisional
Probab=72.97 E-value=2.3 Score=35.50 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=14.9
Q ss_pred ceeecccCCCCc--eEEEEcCCCCCCCc
Q 016358 354 AYVCDCCKMRGR--FWAFSCDVCNYDLH 379 (390)
Q Consensus 354 ~~iC~~C~e~~~--~~~~~~~~~~~~~~ 379 (390)
.|.|.+|++..+ ...--|+.||..|.
T Consensus 127 ~~~C~gC~~~~~~~~~~~~C~~CG~~~~ 154 (164)
T PRK12496 127 RKVCKGCKKKYPEDYPDDVCEICGSPVK 154 (164)
T ss_pred eEECCCCCccccCCCCCCcCCCCCChhh
Confidence 466777776443 23445777766554
No 464
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=72.03 E-value=6.8 Score=33.11 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=27.6
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 48 ~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.|..|.|+.|-...|.|.++..+++.. +++-+|.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEcc
Confidence 588999999999999999999999876 777777653
No 465
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=71.31 E-value=15 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh
Q 016358 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT 73 (390)
Q Consensus 41 ~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~ 73 (390)
.||+.+++..+.|||.|-...=.|--+..+|.+
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 599999999999999998877666666666654
No 466
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.88 E-value=3.1 Score=26.22 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=18.9
Q ss_pred ceeecccCCC---CceEEEEcCCCCCCC
Q 016358 354 AYVCDCCKMR---GRFWAFSCDVCNYDL 378 (390)
Q Consensus 354 ~~iC~~C~e~---~~~~~~~~~~~~~~~ 378 (390)
.|+|..|+.. ..+-.-+|..|++.+
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceE
Confidence 4889999883 334578999999865
No 467
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=70.59 E-value=32 Score=32.98 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=24.7
Q ss_pred HHHHHHHccccccceEEEECCCCcEEee
Q 016358 272 RQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
...++.-|.+..+|..++|+..|+-+..
T Consensus 66 a~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 66 ATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhhcccccccceeeecCCCceeEE
Confidence 4678888999999999999999998776
No 468
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.20 E-value=2.5 Score=23.30 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.2
Q ss_pred eecccCCCCceEEEEcCCCCCCC
Q 016358 356 VCDCCKMRGRFWAFSCDVCNYDL 378 (390)
Q Consensus 356 iC~~C~e~~~~~~~~~~~~~~~~ 378 (390)
.|-.|...-+.-.=.|..|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 37788888888888999999986
No 469
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=70.15 E-value=22 Score=27.40 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=34.8
Q ss_pred cHhhHHHHHHHHHH---hhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc--cceEEEEC
Q 016358 217 CRSFTSQLIEVYNE---LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG--IPALVLIG 291 (390)
Q Consensus 217 C~~~~p~l~~l~~~---~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~lid 291 (390)
-......+.+++++ +++ + +.+|.+|.+. .....+.||+.. +|.+.+.+
T Consensus 29 ~~~~~~~~~~vAk~~~~~kg----k--i~Fv~~d~~~---------------------~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 29 LESLKEFKQAVARQLISEKG----A--INFLTADGDK---------------------FRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCc----e--EEEEEEechH---------------------hhhHHHHcCCCHhHCCEEEEEc
Confidence 35667788888888 773 3 4455555432 234788899986 89999997
Q ss_pred CCC
Q 016358 292 PDG 294 (390)
Q Consensus 292 ~~G 294 (390)
-++
T Consensus 82 ~~~ 84 (111)
T cd03072 82 FRH 84 (111)
T ss_pred chh
Confidence 544
No 470
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=69.34 E-value=20 Score=30.67 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=29.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhc
Q 016358 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT 233 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~ 233 (390)
|-+|+|..|...-|.|.-+.-.|++++-+|++
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~ 142 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ 142 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc
Confidence 67999999999999999999999999999975
No 471
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=69.30 E-value=28 Score=24.60 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=46.0
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016358 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+++..|-+...+-.......+.++.+++-. ..+++=.|.+.. +.++++.++|-+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~---~~~~LeVIDv~~-----------------------~P~lAe~~~ivA 55 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG---GPYELEVIDVLK-----------------------QPQLAEEDKIVA 55 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC---CcEEEEEEEccc-----------------------CHhHHhhCCEEE
Confidence 355666677667888888899999888764 555555555543 367889999999
Q ss_pred cceEEEECC
Q 016358 284 IPALVLIGP 292 (390)
Q Consensus 284 ~P~~~lid~ 292 (390)
+||++=..|
T Consensus 56 tPtLvk~~P 64 (72)
T cd02978 56 TPTLVKVLP 64 (72)
T ss_pred echhhhcCC
Confidence 999775543
No 472
>PHA03075 glutaredoxin-like protein; Provisional
Probab=69.27 E-value=7 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=24.0
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 016358 43 KTICLFFSANWCRPCKTFTPQLVQLYDTL 71 (390)
Q Consensus 43 k~vll~F~~~~C~~C~~~~p~l~~~~~~~ 71 (390)
|.++|-|.-|.|+.|......|.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 67899999999999998888776666654
No 473
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=68.93 E-value=12 Score=25.82 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 48 ~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.|+.+||++|++..-.|.+. |..++.+.++..
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~ 34 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELK 34 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCC
Confidence 45678999998766544432 333666666543
No 474
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=67.90 E-value=49 Score=26.12 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016358 220 FTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 220 ~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++-.+....+.+++ .+++|.-.++..++..|.+.-. -.++.+.-|...+|.++| ||+|+..
T Consensus 25 eL~~~a~~~~~Lk~---~gv~v~RyNL~~~P~aF~~n~~-------------V~~~L~~~G~e~LPitlV---dGeiv~~ 85 (123)
T PF06953_consen 25 ELVRFAADLDWLKE---QGVEVERYNLAQNPQAFVENPE-------------VNQLLQTEGAEALPITLV---DGEIVKT 85 (123)
T ss_dssp HHHHHHHHHHHHHH---TT-EEEEEETTT-TTHHHHSHH-------------HHHHHHHH-GGG-SEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHHh---CCceEEEEccccCHHHHHhCHH-------------HHHHHHHcCcccCCEEEE---CCEEEEe
Confidence 34455666666665 7889999998887766664321 345556668899998654 7999877
No 475
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=67.62 E-value=1.7 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=15.3
Q ss_pred eeecccCCCC---ceEEEEcCCCCCCC
Q 016358 355 YVCDCCKMRG---RFWAFSCDVCNYDL 378 (390)
Q Consensus 355 ~iC~~C~e~~---~~~~~~~~~~~~~~ 378 (390)
|+|..|+..- .+=.-+|..|+|.+
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 6788888732 22245899998864
No 476
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=67.55 E-value=7.4 Score=37.12 Aligned_cols=26 Identities=23% Similarity=0.741 Sum_probs=22.8
Q ss_pred CCceeecccCCCCceEEEEcCCCC-CC
Q 016358 352 AKAYVCDCCKMRGRFWAFSCDVCN-YD 377 (390)
Q Consensus 352 ~~~~iC~~C~e~~~~~~~~~~~~~-~~ 377 (390)
+..++|+.|+---.-|.+.|..|+ |+
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCcc
Confidence 445999999999999999999998 44
No 477
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=67.22 E-value=2.1 Score=43.48 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.5
Q ss_pred ecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016358 357 CDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 357 C~~C~e-~~~~~~~~~~~~~-~~~~~~~~~ 384 (390)
|.+|++ +..|+||+|..|= |||+..|-+
T Consensus 606 CniCk~~pIvG~RyR~l~~fn~dlCq~CF~ 635 (966)
T KOG4286|consen 606 CNICKECPIIGFRYRSLKHFNYDICQSCFF 635 (966)
T ss_pred cchhhhCccceeeeeehhhcChhHHhhHhh
Confidence 999999 8999999999985 999999943
No 478
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.16 E-value=6.1 Score=30.52 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC
Q 016358 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (390)
Q Consensus 47 l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~ 87 (390)
..|+.++|+.|++....|++ ++ +++..+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG--VDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CceEEecccC
Confidence 35678999999987665544 34 4566666543
No 479
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.16 E-value=17 Score=32.33 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=35.4
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhc
Q 016358 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT 233 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~ 233 (390)
..++..+...+..++++++.|...-||+|+...|.+.+.+..+.+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 555555555566668999999999999999999998887777654
No 480
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=66.69 E-value=23 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=19.5
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 48 ~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.|+.++|+.|++..-.+... +..++++.++.+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-------~i~~~~~~~~~~ 34 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-------GLPYELVPVDLG 34 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-------CCCcEEEEeCCC
Confidence 45678899999766544443 222556655544
No 481
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.91 E-value=14 Score=33.01 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhh
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 232 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 232 (390)
.||+.+++..+-|||.|..+.-.|-....+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 48999999999999999999988877777775
No 482
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=64.73 E-value=6.4 Score=32.19 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=10.8
Q ss_pred CCcccHhhHHHHHH
Q 016358 213 WCPPCRSFTSQLIE 226 (390)
Q Consensus 213 wC~~C~~~~p~l~~ 226 (390)
+|++|.+....|+.
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999987766644
No 483
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=64.65 E-value=8.8 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 47 l~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
..|+.++|+.|++....|++ .+ +++..+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HG--IEYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CCcEEEeec
Confidence 45789999999986654444 34 445556554
No 484
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=64.38 E-value=77 Score=31.03 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH-------------------
Q 016358 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK------------------- 251 (390)
Q Consensus 191 ~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~------------------- 251 (390)
+++.+++.+++|..-+|...++- .++..-+...+...+++.+ .++-||-|..+.+.+
T Consensus 285 ~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~---r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p 360 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLK---RGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLP 360 (453)
T ss_pred CCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHH---cCcEEEEEecCCCCccccccccccccchhhhcCC
Confidence 57799999999954444444443 3455555555666666665 788888887763321
Q ss_pred ----HHH---------Hhh-hcCCcccccCCchHHHH-HHHH---cccc-ccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016358 252 ----EFD---------LNH-SIMPWLAIPYEDRARQD-LCRI---FNIK-GIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 252 ----~~~---------~~~-~~~~~~~~~~~~~~~~~-l~~~---~~v~-~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
++. ..+ ....|...|+..+.... +.++ =|+. +.|.++.+-.||+|..+. .+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG----------~G 430 (453)
T PLN03098 361 SIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSG----------RG 430 (453)
T ss_pred CccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCC----------CC
Confidence 011 111 24457778876543322 2212 2332 337788999999998763 34
Q ss_pred CCCChhhHHHH
Q 016358 313 FPFTESRIAEI 323 (390)
Q Consensus 313 ~p~~~~~~~~l 323 (390)
+|-+.+.+++|
T Consensus 431 ~P~W~~~v~eL 441 (453)
T PLN03098 431 MPEWQEIVKEL 441 (453)
T ss_pred CCCHHHHHHhC
Confidence 45555555544
No 485
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=63.98 E-value=86 Score=28.24 Aligned_cols=104 Identities=9% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCCc-cccCc-cCCCEEEEEEecCCChhhhhhHHHHH-HHHHHHhh-CCCcEEEEEEecCCChhHHHHHHH---------
Q 016358 31 RQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRT-RGTELEVIFISFDHDENGFEEHFK--------- 97 (390)
Q Consensus 31 ~~g~-~~l~~-~~gk~vll~F~~~~C~~C~~~~p~l~-~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~--------- 97 (390)
++|+ +++.+ ++||+.||..+.+- .-..+...+. ...+++.. .+..+++|-|++-.+. ++.++.
T Consensus 109 L~g~~~~~~~~l~gkvSlV~l~s~~--~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~~~~~~lrk 184 (252)
T PF05176_consen 109 LAGNKVDTTDLLRGKVSLVCLFSSA--WGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVKLFMGSLRK 184 (252)
T ss_pred CCCCCcccccccCCceEEEEEeehH--HHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHHHHhhhhhc
Confidence 3444 44444 58997666655431 2233333332 23344432 2124888888875432 233332
Q ss_pred hCC---Ccceec--ChhHHHHHHHhcCcCC--CCeEEEEcCCCccccc
Q 016358 98 CMP---WLAVPF--DETLHKKLRIRYRVDR--IPSLIPLASDGTLIEE 138 (390)
Q Consensus 98 ~~~---~~~~~~--~~~~~~~l~~~~~v~~--~P~~~~~d~~G~i~~~ 138 (390)
..| |..+-+ .......+.+.+++.. +..++|+|.+|+|...
T Consensus 185 ~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 185 SIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred cCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 112 222222 2223567888898864 6889999999999854
No 486
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.57 E-value=15 Score=28.49 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=18.7
Q ss_pred HHHHHHhcCcCCCCeEEEEcC
Q 016358 111 HKKLRIRYRVDRIPSLIPLAS 131 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~ 131 (390)
+..+.++|+|+.+|++++...
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 478899999999999999974
No 487
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=63.52 E-value=34 Score=25.90 Aligned_cols=68 Identities=18% Similarity=0.382 Sum_probs=45.3
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC-
Q 016358 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD- 121 (390)
Q Consensus 43 k~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~- 121 (390)
+.||+-|..+- ..-......+.+++++.+..| ++.+|++...+. +.+|+++.+.
T Consensus 20 ~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~g---T~~~vdCgd~e~---------------------kKLCKKlKv~~ 74 (112)
T cd03067 20 NNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQG---TIAWIDCGDSES---------------------RKLCKKLKVDP 74 (112)
T ss_pred CcEEEEEecch-hhHHHHHHHHHHHHHHhcCce---eEEEEecCChHH---------------------HHHHHHHccCC
Confidence 35566665443 233455668888899888875 789998876554 8999999988
Q ss_pred ---CCCeEEEEcCCCcc
Q 016358 122 ---RIPSLIPLASDGTL 135 (390)
Q Consensus 122 ---~~P~~~~~d~~G~i 135 (390)
.-|..+.--.+|..
T Consensus 75 ~~kp~~~~LkHYKdG~f 91 (112)
T cd03067 75 SSKPKPVELKHYKDGDF 91 (112)
T ss_pred CCCCCcchhhcccCCCc
Confidence 45544333356644
No 488
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.50 E-value=17 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=22.6
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016358 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 48 ~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
.|+.++|+.|++....|++ .+ +++..+++..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~ 34 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGED 34 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCC
Confidence 5678999999987765555 34 55777776543
No 489
>PHA00626 hypothetical protein
Probab=62.87 E-value=5.4 Score=26.31 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.2
Q ss_pred eEEEEcCCCCCCCc
Q 016358 366 FWAFSCDVCNYDLH 379 (390)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (390)
.-+|.|+.|+|.+-
T Consensus 21 snrYkCkdCGY~ft 34 (59)
T PHA00626 21 SDDYVCCDCGYNDS 34 (59)
T ss_pred CcceEcCCCCCeec
Confidence 35899999998754
No 490
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=62.81 E-value=21 Score=30.58 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=55.8
Q ss_pred eecCCCc-----cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016358 28 LLSRQGK-----VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 28 l~~~~g~-----~~l~~~~gk~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
+..++|. |+.+. +|-+|+|-.|...=|-|.-....|++++-+|.. +-||.+-.+.
T Consensus 93 V~~ISg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~------iKFVki~at~------------- 152 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ------IKFVKIPATT------------- 152 (240)
T ss_pred eeeccchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc------ceEEeccccc-------------
Confidence 5556666 33333 578999999999999999999999999999976 4444433211
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016358 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
-...|--...||++++. .|.+...
T Consensus 153 -----------cIpNYPe~nlPTl~VY~-~G~lk~q 176 (240)
T KOG3170|consen 153 -----------CIPNYPESNLPTLLVYH-HGALKKQ 176 (240)
T ss_pred -----------ccCCCcccCCCeEEEee-cchHHhh
Confidence 11225556789999996 7777643
No 491
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=62.71 E-value=13 Score=28.76 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016358 64 LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 64 l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
|.+...++.+.| +.+|.|.+...+. .++|++...| .+|+..|....+-+.+|+.
T Consensus 2 L~~~~~~l~~~g--v~lv~I~~g~~~~-~~~f~~~~~~-p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 2 LSRRKPELEAAG--VKLVVIGCGSPEG-IEKFCELTGF-PFPLYVDPERKLYKALGLK 55 (115)
T ss_pred hhHhHHHHHHcC--CeEEEEEcCCHHH-HHHHHhccCC-CCcEEEeCcHHHHHHhCCc
Confidence 445566777777 8899999875433 6666654443 2333344445555555544
No 492
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.65 E-value=16 Score=30.95 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=44.5
Q ss_pred EeCCCCeeeecccC--CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016358 188 LSRDHRKITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 188 l~~~g~~~~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
++..|+++.+.++. .+.||....-+.|--|+++...|..+..-..+ .++..++|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~---~Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDE---LGVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH---hCCEEEEEec
Confidence 47889999999983 35677777789999999999999999665654 6777777764
No 493
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=62.21 E-value=3.8 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=11.4
Q ss_pred eeecCCCceeecccCCCCceEEEEcCCCC
Q 016358 347 LKLDMAKAYVCDCCKMRGRFWAFSCDVCN 375 (390)
Q Consensus 347 l~l~~~~~~iC~~C~e~~~~~~~~~~~~~ 375 (390)
|.+.+ +.|.|..|+.. ..-.-.|.+|+
T Consensus 11 L~~~~-~~~~C~~C~~~-~~~~a~CPdC~ 37 (70)
T PF07191_consen 11 LEWQG-GHYHCEACQKD-YKKEAFCPDCG 37 (70)
T ss_dssp EEEET-TEEEETTT--E-EEEEEE-TTT-
T ss_pred cEEeC-CEEECcccccc-ceecccCCCcc
Confidence 44443 56666666653 22244466665
No 494
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=11 Score=30.95 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=35.1
Q ss_pred cccCcc-CCCEEEEEEecC--CChh-hhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016358 35 VPLSSC-GGKTICLFFSAN--WCRP-CKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 35 ~~l~~~-~gk~vll~F~~~--~C~~-C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
+.++++ +||.++| |..| .-|. |+...|-+.+-+++++.+|.+ +|+-|++|
T Consensus 35 v~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd-~iicvSVn 88 (171)
T KOG0541|consen 35 VNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVD-EIICVSVN 88 (171)
T ss_pred EEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCc-EEEEEecC
Confidence 667765 6866544 4433 4466 488899999999999998733 67777777
No 495
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=61.65 E-value=5.3 Score=30.85 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=15.6
Q ss_pred EEEccCCCcccHhhHHHHHH
Q 016358 207 LYFGAHWCPPCRSFTSQLIE 226 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~ 226 (390)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778999999987766654
No 496
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=61.24 E-value=17 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred EEEccCCCcccHhhHHHHHHH
Q 016358 207 LYFGAHWCPPCRSFTSQLIEV 227 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l 227 (390)
..+..++|++|.+..-.|.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 346678999999876666443
No 497
>PRK09301 circadian clock protein KaiB; Provisional
Probab=60.68 E-value=41 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=49.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016358 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++.+++=.|.+..-+-.+.....+.++.+.+-. ..+++=.|.+-. ...+++.+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~---g~y~LeVIDv~~-----------------------qPelAE~~~ 57 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFK---GVYALKVIDVLK-----------------------NPQLAEEDK 57 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEccc-----------------------CHhHHhHCC
Confidence 346777777788788899999999999888764 445555555543 368899999
Q ss_pred ccccceEEEECCC
Q 016358 281 IKGIPALVLIGPD 293 (390)
Q Consensus 281 v~~~P~~~lid~~ 293 (390)
|-++||++=..|.
T Consensus 58 IvATPTLIK~~P~ 70 (103)
T PRK09301 58 ILATPTLAKILPP 70 (103)
T ss_pred eEEecHHhhcCCC
Confidence 9999998866443
No 498
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=59.09 E-value=35 Score=24.07 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=44.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016358 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+++.-|-+...+-+++....+.++-+++.+.. +++-.|++... ..+++.+++..+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~--~~LeVIDv~~~-----------------------P~lAe~~~ivAt 56 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGGP--YELEVIDVLKQ-----------------------PQLAEEDKIVAT 56 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCCc--EEEEEEEcccC-----------------------HhHHhhCCEEEe
Confidence 34556666666888888888888888876433 55555554422 688999999999
Q ss_pred CeEEEEcC
Q 016358 124 PSLIPLAS 131 (390)
Q Consensus 124 P~~~~~d~ 131 (390)
||++-..+
T Consensus 57 PtLvk~~P 64 (72)
T cd02978 57 PTLVKVLP 64 (72)
T ss_pred chhhhcCC
Confidence 99876543
No 499
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.65 E-value=30 Score=30.46 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=28.6
Q ss_pred CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEe
Q 016358 43 KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84 (390)
Q Consensus 43 k~vll~F~-~~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~ 84 (390)
+.+-|++| ..-||.|-...+.|.++...+...- .+++++=+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~w~p 45 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIRWRP 45 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce-eEEEEecc
Confidence 34444544 6789999999999999999887541 34555443
No 500
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=58.29 E-value=52 Score=24.20 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=47.6
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016358 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
++++=.|.+..-+-++.....+.++.+.+-. +.+++=.|.+-. +.++++.+.|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~---g~y~LeVIDv~~-----------------------qP~lAE~~~Iv 56 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ---GVYALKVIDVLK-----------------------NPQLAEEDKIL 56 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEccc-----------------------CHhHHhHCCEE
Confidence 4566566777778899999999999887764 445555555543 36889999999
Q ss_pred ccceEEEECCC
Q 016358 283 GIPALVLIGPD 293 (390)
Q Consensus 283 ~~P~~~lid~~ 293 (390)
++||++=..|.
T Consensus 57 ATPtLIK~~P~ 67 (87)
T TIGR02654 57 ATPTLSKILPP 67 (87)
T ss_pred EecHHhhcCCC
Confidence 99998866443
Done!