BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016359
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 149/342 (43%), Gaps = 41/342 (11%)
Query: 47 LIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLIT 106
L LE Q++ + A++AD+FD+I GT G LL + + + + RP A++ +
Sbjct: 35 LEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXISTPNENNRPFAAAKEIVPFYF 94
Query: 107 RRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLN 166
++FN S L K + GK + +VL+E G+ + +++ FD+
Sbjct: 95 EHGPQIFNP--SGQILGPK--YDGKYLXQVLQEKL----GET-RVHQALTEVVISSFDIK 145
Query: 167 SSAPFVFSRADASESPSFNFELWKACRATSATPSMFKPFAL---TSVDGKTSCTAVDGGL 223
++ P +F++++ + SP + + + +T+A P+ F P TS + VDG +
Sbjct: 146 TNKPVIFTKSNLANSPELDAKXYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAV 205
Query: 224 -VMNNPTAAAVTHVLHNKRDFPSVNGVEDL-----LVLSLGNGPLISGSGPCERKPRSNG 277
+ +P +++ + P+ + L L+LSLG +G+ K +
Sbjct: 206 ATVADPALLSISVATRLAQKDPAFASIRSLNYKKXLLLSLG-----TGTTSEFDKTYTAK 260
Query: 278 ECSTSSVVDIVL-------DGVSETIDQMLGNAFCW--NRADYVRIQVNGLISEGVVGPR 328
E +T + V L S D L AF ++ +Y+R+Q N L G
Sbjct: 261 EAATWTAVHWXLVIQKXTDAASSYXTDYYLSTAFQALDSKNNYLRVQENAL-----TGTT 315
Query: 329 MEAEVLKERGVESLPFGGKRLL----TETNGQRIESFVQRLA 366
E + E E L G+ LL +E N + E ++R A
Sbjct: 316 TEXDDASEANXELLVQVGENLLKKPVSEDNPETYEEALKRFA 357
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 17/77 (22%)
Query: 306 WNRADYVRIQVNGLISEGV--VGPR---------MEAEVLKERGVESLPFGGKRLLTETN 354
W A+YV ++ I G+ +G R M+ ++L + +E + + G+R+LTE N
Sbjct: 647 WLAAEYVPT-LDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELN 705
Query: 355 GQRIESFVQRLAASGKT 371
S + RLA KT
Sbjct: 706 -----SLISRLADDTKT 717
>pdb|3PA1|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type A
pdb|3PA1|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type A
pdb|3PA2|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type Ley
pdb|3PA2|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type Ley
pdb|3Q38|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type B (Triglycan)
pdb|3Q38|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type B (Triglycan)
pdb|3Q39|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type H2 (Diglycan)
pdb|3Q39|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type H2 (Diglycan)
pdb|3Q3A|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type H2 (Triglycan)
pdb|3Q3A|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Hbga Type H2 (Triglycan)
pdb|3Q6Q|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Disordered Hbga Type Lea
pdb|3Q6Q|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Disordered Hbga Type Lea
pdb|3Q6R|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Disordered Hbga Type Lex
pdb|3Q6R|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Disordered Hbga Type Lex
pdb|3RY8|A Chain A, Structural Basis For Norovirus Inhibition And Fucose
Mimicry By Citrate
pdb|3RY8|B Chain B, Structural Basis For Norovirus Inhibition And Fucose
Mimicry By Citrate
Length = 319
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 178 ASESPSF-------NFELWKACRATSATPSMFKPFALTSVDGKT-----SCTAVDGGLVM 225
A+ SP F F W+ +S P+ F P L SVD + + + G L +
Sbjct: 144 ATYSPKFTPKLGNIQFSTWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGALTL 203
Query: 226 NNPTAAAVTHVL 237
N A +V V
Sbjct: 204 NMNLAPSVAPVF 215
>pdb|3ONU|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026
pdb|3ONU|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026
pdb|3ONY|A Chain A, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Fucose
pdb|3ONY|B Chain B, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Fucose
pdb|3ONY|C Chain C, Crystal Structure Of P Domain From Norwalk Virus Strain
Vietnam 026 In Complex With Fucose
Length = 318
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 178 ASESPSF-------NFELWKACRATSATPSMFKPFALTSVDGKT-----SCTAVDGGLVM 225
A+ SP F F W+ +S P+ F P L SVD + + + G L +
Sbjct: 143 ATYSPKFTPKLGNIQFSTWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGALTL 202
Query: 226 NNPTAAAVTHVL 237
N A +V V
Sbjct: 203 NMNLAPSVAPVF 214
>pdb|3V7A|A Chain A, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|B Chain B, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 315
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 178 ASESPSF-------NFELWKACRATSATPSMFKPFALTSVDGKT-----SCTAVDGGLVM 225
A+ SP F F W+ +S P+ F P L SVD + + + G L +
Sbjct: 140 ATYSPKFTPKLGNIQFSTWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGALTL 199
Query: 226 NNPTAAAVTHVL 237
N A +V V
Sbjct: 200 NMNLAPSVAPVF 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,833,788
Number of Sequences: 62578
Number of extensions: 422387
Number of successful extensions: 906
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 7
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)