BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016360
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 74 DWGPL--------QDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLY---WDQ 122
DWG + ++ + K ++T + DF++ LGD + A + ++
Sbjct: 14 DWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFED 73
Query: 123 AISPTRVRGIPWASIFGNHD 142
S +R +PW + GNHD
Sbjct: 74 VFSDPSLRNVPWHVLAGNHD 93
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 71 AWTDWG--PLQDFNSVKVMSTVLDHET------PDFVIYLGDVITANNMAVANASLY--- 119
A DWG P F++ + M+ + DF++ LGD + AN +
Sbjct: 11 AVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQET 70
Query: 120 WDQAISPTRVRGIPWASIFGNHD 142
++ S +R IPW + GNHD
Sbjct: 71 FEDVFSDRALRNIPWYVLAGNHD 93
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 74 DWG--PLQDFNSVKVMSTVLDHET------PDFVIYLGDVITANNMAVANASLY---WDQ 122
DWG P F++ + M+ + DF++ LGD + AN + ++
Sbjct: 35 DWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFED 94
Query: 123 AISPTRVRGIPWASIFGNHD 142
S +R IPW + GNHD
Sbjct: 95 VFSDRALRNIPWYVLAGNHD 114
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 170 YSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDL 206
Y E F+G MK I+ ++ SH GPKDL
Sbjct: 31 YHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDL 67
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 74 DWG--PLQDFNSVKVMSTVLDHET------PDFVIYLGDVITANNMAVANASLY---WDQ 122
DWG P F++ + M+ + DF++ LGD + N + ++
Sbjct: 18 DWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFED 77
Query: 123 AISPTRVRGIPWASIFGNHD 142
S +R +PW + GNHD
Sbjct: 78 VFSDRSLRKVPWYVLAGNHD 97
>pdb|2NVO|A Chain A, Crystal Structure Of Deinococcus Radiodurans Ro (Rsr)
Protein
Length = 535
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 292 VGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGG 351
+G++ + V + ++ + T A+ G H LD L +A+ G G
Sbjct: 278 LGNLGRVGVLTPNDSATVQAVIERLTDPAALKRGRIHPLDAL----KARLVYAQGQGVRG 333
Query: 352 YGNWPRGARILEIMEQPFSL 371
G W R+++ +E+ F+L
Sbjct: 334 KGTWLPVPRVVDALEEAFTL 353
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 74 DWG--PLQDFNSVKVMSTVLDHET------PDFVIYLGDVITANNMAVANASLY---WDQ 122
DWG P F++ + M+ + DF++ LGD + N + ++
Sbjct: 12 DWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFED 71
Query: 123 AISPTRVRGIPWASIFGNHD 142
S +R +PW + GNHD
Sbjct: 72 VFSDRSLRKVPWYVLAGNHD 91
>pdb|2HIY|A Chain A, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|B Chain B, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|C Chain C, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|D Chain D, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
Length = 183
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 237 GGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKA--YKKVAPRFGVHKPCVGS 294
GG V + + E E++ I F I SKA +K+ F VH P + S
Sbjct: 17 GGKNKVVXAELRQELTNLGLEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQS 76
Query: 295 INKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLD 331
+ S+ EAE+ + R + F+ + GLD
Sbjct: 77 FSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,511,478
Number of Sequences: 62578
Number of extensions: 538225
Number of successful extensions: 1066
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)