Query 016360
Match_columns 390
No_of_seqs 234 out of 2146
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 8.7E-56 1.9E-60 413.9 29.5 294 46-382 44-366 (379)
2 cd07383 MPP_Dcr2 Saccharomyces 100.0 1.5E-32 3.1E-37 250.1 20.8 197 55-353 1-199 (199)
3 PRK11148 cyclic 3',5'-adenosin 100.0 5.9E-32 1.3E-36 258.2 23.6 241 54-382 12-266 (275)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 3.7E-28 8E-33 230.3 25.6 243 54-369 2-255 (262)
5 cd07396 MPP_Nbla03831 Homo sap 100.0 7.3E-28 1.6E-32 229.1 21.4 230 57-368 1-263 (267)
6 cd07402 MPP_GpdQ Enterobacter 100.0 1.2E-26 2.7E-31 216.6 21.9 228 58-368 1-239 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 4.8E-23 1E-27 198.2 26.3 263 54-389 2-293 (294)
8 cd07399 MPP_YvnB Bacillus subt 99.9 3.9E-23 8.4E-28 190.3 18.4 201 57-374 1-209 (214)
9 TIGR03767 P_acnes_RR metalloph 99.9 7.4E-22 1.6E-26 196.5 25.4 133 209-368 290-433 (496)
10 cd07378 MPP_ACP5 Homo sapiens 99.9 3.1E-21 6.8E-26 184.1 20.1 234 57-367 1-266 (277)
11 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.2E-20 4.7E-25 176.6 19.4 196 59-332 2-212 (256)
12 PLN02533 probable purple acid 99.8 7E-19 1.5E-23 177.4 24.4 256 54-389 137-417 (427)
13 TIGR03768 RPA4764 metallophosp 99.8 1.3E-18 2.9E-23 171.6 24.4 143 208-368 290-452 (492)
14 cd07393 MPP_DR1119 Deinococcus 99.8 1.4E-18 3.1E-23 161.9 19.2 205 59-350 1-229 (232)
15 COG1409 Icc Predicted phosphoh 99.8 1E-17 2.2E-22 160.1 24.7 208 57-349 1-218 (301)
16 cd00842 MPP_ASMase acid sphing 99.8 1.7E-18 3.6E-23 167.1 19.3 198 82-336 53-267 (296)
17 TIGR03729 acc_ester putative p 99.8 7.5E-18 1.6E-22 157.7 18.1 216 58-343 1-234 (239)
18 cd08163 MPP_Cdc1 Saccharomyces 99.8 3.1E-17 6.7E-22 154.9 19.7 188 85-335 35-231 (257)
19 PTZ00422 glideosome-associated 99.7 1.9E-15 4.2E-20 148.7 28.1 275 55-388 25-327 (394)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.8E-16 3.8E-21 141.9 17.5 181 59-342 1-185 (188)
21 PF00149 Metallophos: Calcineu 99.7 2.5E-16 5.5E-21 135.7 10.0 79 57-145 1-79 (200)
22 cd00840 MPP_Mre11_N Mre11 nucl 99.6 4.6E-14 9.9E-19 129.8 16.7 87 58-145 1-90 (223)
23 KOG1378 Purple acid phosphatas 99.6 3.3E-13 7.1E-18 133.4 23.1 256 55-389 146-436 (452)
24 cd07404 MPP_MS158 Microscilla 99.6 8.9E-15 1.9E-19 129.1 10.3 68 59-144 1-68 (166)
25 cd07400 MPP_YydB Bacillus subt 99.5 9.1E-14 2E-18 119.5 12.5 79 59-142 1-79 (144)
26 TIGR00583 mre11 DNA repair pro 99.5 2.5E-12 5.5E-17 128.4 24.5 84 55-145 2-124 (405)
27 cd07388 MPP_Tt1561 Thermus the 99.5 2.1E-12 4.6E-17 119.2 20.6 72 56-144 4-75 (224)
28 PRK11340 phosphodiesterase Yae 99.5 1.8E-12 3.9E-17 123.6 17.3 78 55-144 48-125 (271)
29 KOG2679 Purple (tartrate-resis 99.4 2.2E-12 4.8E-17 118.6 13.6 83 244-348 191-274 (336)
30 cd07385 MPP_YkuE_C Bacillus su 99.4 7.2E-12 1.6E-16 115.5 15.4 76 57-145 2-77 (223)
31 cd08165 MPP_MPPE1 human MPPE1 99.4 5.8E-12 1.3E-16 110.3 12.9 86 60-145 1-90 (156)
32 PF12850 Metallophos_2: Calcin 99.4 1.2E-12 2.7E-17 113.4 8.2 55 309-366 101-155 (156)
33 PRK10966 exonuclease subunit S 99.3 3.6E-10 7.7E-15 113.6 23.2 85 57-145 1-88 (407)
34 PRK05340 UDP-2,3-diacylglucosa 99.3 9.3E-11 2E-15 109.9 15.2 79 57-144 1-83 (241)
35 cd07397 MPP_DevT Myxococcus xa 99.3 4E-10 8.7E-15 104.5 17.7 64 57-145 1-64 (238)
36 PRK09453 phosphodiesterase; Pr 99.2 4E-10 8.7E-15 101.1 16.8 76 57-144 1-76 (182)
37 TIGR00040 yfcE phosphoesterase 99.2 1.8E-10 3.9E-15 100.9 13.4 63 57-144 1-64 (158)
38 cd08166 MPP_Cdc1_like_1 unchar 99.2 2E-10 4.3E-15 103.4 13.8 86 60-145 1-94 (195)
39 PF14582 Metallophos_3: Metall 99.2 4.8E-10 1E-14 101.3 15.2 77 57-145 6-103 (255)
40 KOG3770 Acid sphingomyelinase 99.2 1.8E-09 3.8E-14 109.8 20.7 230 95-377 210-459 (577)
41 TIGR00619 sbcd exonuclease Sbc 99.2 4.7E-11 1E-15 112.7 8.2 88 57-145 1-89 (253)
42 PHA02546 47 endonuclease subun 99.2 5E-11 1.1E-15 117.3 8.4 89 57-145 1-90 (340)
43 cd07379 MPP_239FB Homo sapiens 99.1 1.2E-09 2.7E-14 92.9 13.9 62 58-144 1-63 (135)
44 COG0420 SbcD DNA repair exonuc 99.1 8.5E-11 1.8E-15 117.9 7.8 85 57-145 1-89 (390)
45 COG2129 Predicted phosphoester 99.1 2.4E-08 5.2E-13 90.6 20.0 73 56-144 3-77 (226)
46 cd07394 MPP_Vps29 Homo sapiens 99.1 1.7E-08 3.6E-13 90.3 18.7 68 315-384 103-173 (178)
47 cd00841 MPP_YfcE Escherichia c 99.1 6.4E-09 1.4E-13 90.5 15.6 48 317-366 101-148 (155)
48 cd07403 MPP_TTHA0053 Thermus t 98.9 8.9E-09 1.9E-13 87.2 10.9 24 308-332 82-105 (129)
49 cd07391 MPP_PF1019 Pyrococcus 98.9 2.3E-09 4.9E-14 95.3 6.9 84 60-145 1-89 (172)
50 COG2908 Uncharacterized protei 98.9 5.6E-09 1.2E-13 95.6 9.6 77 60-145 1-81 (237)
51 cd07384 MPP_Cdc1_like Saccharo 98.9 5E-09 1.1E-13 93.1 7.5 86 60-145 1-101 (171)
52 TIGR01854 lipid_A_lpxH UDP-2,3 98.8 2.4E-08 5.1E-13 93.1 8.5 76 60-144 2-81 (231)
53 cd07410 MPP_CpdB_N Escherichia 98.8 1.1E-06 2.4E-11 84.1 20.2 87 57-144 1-95 (277)
54 cd07406 MPP_CG11883_N Drosophi 98.8 6.8E-07 1.5E-11 84.6 18.5 82 57-144 1-83 (257)
55 cd00845 MPP_UshA_N_like Escher 98.7 1.6E-06 3.5E-11 81.5 20.5 82 57-145 1-83 (252)
56 TIGR00024 SbcD_rel_arch putati 98.7 4.3E-08 9.2E-13 90.9 7.6 82 58-144 16-102 (225)
57 COG1768 Predicted phosphohydro 98.7 1.1E-06 2.5E-11 76.6 15.4 80 57-144 1-86 (230)
58 COG1407 Predicted ICC-like pho 98.6 6.3E-08 1.4E-12 89.0 7.0 87 57-145 20-111 (235)
59 cd07408 MPP_SA0022_N Staphyloc 98.6 1.7E-05 3.6E-10 75.1 21.4 82 57-144 1-82 (257)
60 KOG3662 Cell division control 98.6 3.1E-07 6.6E-12 90.7 9.6 120 19-145 18-145 (410)
61 cd07386 MPP_DNA_pol_II_small_a 98.5 2.6E-07 5.6E-12 86.7 7.7 79 60-145 2-95 (243)
62 cd07411 MPP_SoxB_N Thermus the 98.5 5.7E-05 1.2E-09 71.8 22.9 84 57-145 1-96 (264)
63 COG1408 Predicted phosphohydro 98.5 3.6E-07 7.8E-12 87.5 7.6 75 56-145 44-119 (284)
64 cd00838 MPP_superfamily metall 98.4 5.9E-07 1.3E-11 74.1 6.7 70 60-143 1-70 (131)
65 cd07398 MPP_YbbF-LpxH Escheric 98.4 3E-07 6.6E-12 84.2 5.1 79 60-145 1-83 (217)
66 KOG2310 DNA repair exonuclease 98.4 1.5E-06 3.3E-11 87.2 9.4 56 55-111 12-68 (646)
67 PRK04036 DNA polymerase II sma 98.4 1.3E-06 2.7E-11 90.4 9.2 83 55-145 242-344 (504)
68 cd07412 MPP_YhcR_N Bacillus su 98.4 0.00013 2.8E-09 70.3 22.5 85 57-144 1-88 (288)
69 cd07390 MPP_AQ1575 Aquifex aeo 98.4 1.3E-06 2.8E-11 77.3 7.7 77 60-145 2-83 (168)
70 PHA02239 putative protein phos 98.3 2E-06 4.3E-11 80.3 8.6 71 57-144 1-73 (235)
71 cd07409 MPP_CD73_N CD73 ecto-5 98.3 0.0002 4.3E-09 68.7 22.7 85 57-145 1-95 (281)
72 COG0622 Predicted phosphoester 98.3 3.1E-05 6.7E-10 68.7 15.3 65 56-145 1-66 (172)
73 cd08164 MPP_Ted1 Saccharomyces 98.2 4.3E-06 9.3E-11 75.3 8.1 61 85-145 34-112 (193)
74 PRK00166 apaH diadenosine tetr 98.1 1E-05 2.2E-10 77.3 7.8 68 57-144 1-69 (275)
75 PRK09419 bifunctional 2',3'-cy 98.1 0.00027 5.8E-09 80.4 20.3 78 55-145 659-737 (1163)
76 cd07387 MPP_PolD2_C PolD2 (DNA 98.0 0.00021 4.6E-09 67.4 15.3 84 58-149 1-112 (257)
77 cd07425 MPP_Shelphs Shewanella 97.9 4.6E-05 1E-09 69.9 8.1 73 60-145 1-81 (208)
78 cd07424 MPP_PrpA_PrpB PrpA and 97.8 4E-05 8.7E-10 70.1 6.6 66 58-145 2-68 (207)
79 cd00144 MPP_PPP_family phospho 97.8 6.3E-05 1.4E-09 69.3 7.2 68 61-145 2-69 (225)
80 cd07423 MPP_PrpE Bacillus subt 97.7 7.8E-05 1.7E-09 69.6 7.2 70 57-144 1-80 (234)
81 PRK11439 pphA serine/threonine 97.7 6.5E-05 1.4E-09 69.3 6.5 67 57-145 17-84 (218)
82 cd07422 MPP_ApaH Escherichia c 97.7 0.00011 2.4E-09 69.5 7.4 66 60-145 2-68 (257)
83 PF09423 PhoD: PhoD-like phosp 97.6 0.0033 7.2E-08 64.4 17.6 94 228-331 264-378 (453)
84 PRK09968 serine/threonine-spec 97.6 0.00015 3.2E-09 67.0 6.9 67 57-145 15-82 (218)
85 PRK13625 bis(5'-nucleosyl)-tet 97.6 0.00014 3.1E-09 68.3 6.9 70 57-144 1-79 (245)
86 cd07407 MPP_YHR202W_N Saccharo 97.6 0.0059 1.3E-07 58.6 17.9 89 55-145 4-98 (282)
87 PRK09419 bifunctional 2',3'-cy 97.5 0.0038 8.2E-08 71.3 18.0 88 56-144 41-139 (1163)
88 PRK09418 bifunctional 2',3'-cy 97.5 0.0072 1.6E-07 65.6 18.9 32 313-345 272-303 (780)
89 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00035 7.6E-09 64.7 7.6 68 60-145 2-77 (222)
90 cd07405 MPP_UshA_N Escherichia 97.5 0.029 6.3E-07 53.9 21.0 83 57-145 1-88 (285)
91 TIGR00668 apaH bis(5'-nucleosy 97.4 0.00026 5.6E-09 67.4 6.2 67 58-144 2-69 (279)
92 COG4186 Predicted phosphoester 97.4 0.0009 2E-08 57.5 8.3 80 58-145 5-87 (186)
93 cd08162 MPP_PhoA_N Synechococc 97.4 0.0069 1.5E-07 59.1 15.8 81 57-144 1-91 (313)
94 cd07421 MPP_Rhilphs Rhilph pho 97.4 0.00074 1.6E-08 64.6 8.7 71 58-145 3-81 (304)
95 PRK09558 ushA bifunctional UDP 97.4 0.03 6.5E-07 58.9 21.3 84 56-145 34-122 (551)
96 PRK11907 bifunctional 2',3'-cy 97.3 0.016 3.4E-07 63.2 18.8 88 56-145 115-214 (814)
97 COG0737 UshA 5'-nucleotidase/2 97.3 0.011 2.4E-07 61.6 16.7 88 55-145 25-116 (517)
98 PRK09420 cpdB bifunctional 2', 97.2 0.042 9.1E-07 58.9 20.7 88 56-144 25-122 (649)
99 TIGR01390 CycNucDiestase 2',3' 97.1 0.028 6E-07 60.0 18.1 88 56-144 2-99 (626)
100 cd07382 MPP_DR1281 Deinococcus 96.9 0.16 3.6E-06 48.0 19.5 70 58-145 1-71 (255)
101 TIGR01530 nadN NAD pyrophospha 96.9 0.058 1.3E-06 56.8 17.7 85 57-145 1-95 (550)
102 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.8 0.0033 7.2E-08 59.7 6.8 75 59-144 1-86 (262)
103 PF04042 DNA_pol_E_B: DNA poly 96.7 0.0021 4.5E-08 58.7 4.7 77 59-145 1-92 (209)
104 TIGR00282 metallophosphoestera 96.7 0.34 7.3E-06 46.1 19.5 71 57-145 1-72 (266)
105 smart00156 PP2Ac Protein phosp 96.6 0.0067 1.5E-07 57.9 7.3 72 58-145 29-100 (271)
106 COG1311 HYS2 Archaeal DNA poly 96.5 0.0049 1.1E-07 62.1 6.1 84 55-145 224-322 (481)
107 cd07416 MPP_PP2B PP2B, metallo 96.4 0.01 2.2E-07 57.6 7.5 71 58-144 44-114 (305)
108 cd07420 MPP_RdgC Drosophila me 96.2 0.01 2.2E-07 58.0 6.6 72 58-145 52-124 (321)
109 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.0 0.023 5E-07 54.6 7.8 71 58-145 43-114 (285)
110 cd07418 MPP_PP7 PP7, metalloph 96.0 0.016 3.5E-07 57.6 6.7 73 57-145 66-139 (377)
111 cd07414 MPP_PP1_PPKL PP1, PPKL 95.9 0.027 5.8E-07 54.4 7.5 72 58-145 51-122 (293)
112 PTZ00480 serine/threonine-prot 95.6 0.024 5.1E-07 55.3 6.2 72 58-145 60-131 (320)
113 cd07417 MPP_PP5_C PP5, C-termi 95.5 0.033 7.1E-07 54.4 6.8 73 57-145 60-133 (316)
114 PTZ00239 serine/threonine prot 95.4 0.043 9.3E-07 53.2 7.1 72 58-145 44-115 (303)
115 KOG4419 5' nucleotidase [Nucle 95.3 0.15 3.3E-06 52.8 10.8 61 247-334 212-273 (602)
116 PTZ00244 serine/threonine-prot 95.3 0.034 7.5E-07 53.6 5.9 71 59-145 54-124 (294)
117 cd07419 MPP_Bsu1_C Arabidopsis 95.2 0.071 1.5E-06 52.0 7.9 44 98-145 85-128 (311)
118 cd07380 MPP_CWF19_N Schizosacc 94.5 0.093 2E-06 45.5 6.1 55 83-142 13-68 (150)
119 COG3540 PhoD Phosphodiesterase 94.2 0.62 1.3E-05 47.2 11.7 96 226-330 300-418 (522)
120 PTZ00235 DNA polymerase epsilo 94.1 0.43 9.2E-06 45.7 9.9 85 49-144 20-122 (291)
121 COG5555 Cytolysin, a secreted 92.6 0.37 8E-06 45.7 6.7 90 246-341 252-345 (392)
122 cd00838 MPP_superfamily metall 90.9 0.43 9.3E-06 38.5 4.9 25 308-333 94-118 (131)
123 cd07389 MPP_PhoD Bacillus subt 90.6 8.4 0.00018 35.1 13.7 53 92-145 26-103 (228)
124 cd07381 MPP_CapA CapA and rela 89.3 6.1 0.00013 36.6 11.8 74 248-344 160-233 (239)
125 smart00854 PGA_cap Bacterial c 82.6 19 0.00041 33.3 11.4 36 308-344 196-231 (239)
126 PF13277 YmdB: YmdB-like prote 82.1 46 0.00099 31.4 15.0 53 85-145 17-69 (253)
127 cd07398 MPP_YbbF-LpxH Escheric 79.9 2.2 4.8E-05 38.5 4.0 34 311-345 182-215 (217)
128 KOG0374 Serine/threonine speci 77.3 3.1 6.6E-05 40.9 4.2 72 58-145 60-132 (331)
129 COG1692 Calcineurin-like phosp 76.7 9.1 0.0002 35.8 6.8 71 57-145 1-72 (266)
130 TIGR01854 lipid_A_lpxH UDP-2,3 76.6 5.3 0.00011 36.9 5.5 23 309-332 177-199 (231)
131 KOG3947 Phosphoesterases [Gene 67.6 9.7 0.00021 36.2 4.9 66 55-144 60-126 (305)
132 KOG0373 Serine/threonine speci 65.1 8.5 0.00018 35.4 3.9 70 59-145 48-118 (306)
133 PF06874 FBPase_2: Firmicute f 62.9 7.8 0.00017 40.9 3.6 52 83-143 172-223 (640)
134 PF09587 PGA_cap: Bacterial ca 57.1 1.6E+02 0.0036 27.2 17.0 77 246-345 167-243 (250)
135 KOG0372 Serine/threonine speci 56.6 15 0.00032 34.5 3.9 45 97-145 71-115 (303)
136 KOG2476 Uncharacterized conser 56.1 30 0.00064 35.3 6.2 70 57-142 6-76 (528)
137 PF02350 Epimerase_2: UDP-N-ac 55.5 28 0.00061 34.3 6.1 46 83-140 55-100 (346)
138 KOG3818 DNA polymerase epsilon 55.0 67 0.0015 32.7 8.4 79 56-145 282-370 (525)
139 KOG0371 Serine/threonine prote 53.6 29 0.00063 32.8 5.3 68 57-145 60-132 (319)
140 COG0381 WecB UDP-N-acetylgluco 49.5 28 0.0006 34.8 4.9 48 83-142 80-128 (383)
141 PRK09968 serine/threonine-spec 42.7 25 0.00055 32.1 3.3 32 317-350 178-209 (218)
142 COG3855 Fbp Uncharacterized pr 42.7 30 0.00066 35.3 3.9 50 86-144 181-230 (648)
143 KOG3325 Membrane coat complex 40.8 1.4E+02 0.0031 25.9 7.2 70 309-382 98-173 (183)
144 TIGR03568 NeuC_NnaA UDP-N-acet 40.1 74 0.0016 31.5 6.4 47 83-141 81-128 (365)
145 KOG3325 Membrane coat complex 39.0 65 0.0014 28.0 4.8 65 59-145 3-67 (183)
146 TIGR01769 GGGP geranylgeranylg 34.3 1E+02 0.0022 28.1 5.8 54 84-145 13-67 (205)
147 cd07425 MPP_Shelphs Shewanella 33.1 49 0.0011 30.0 3.6 23 309-332 159-181 (208)
148 KOG0377 Protein serine/threoni 31.8 26 0.00057 35.5 1.6 43 99-145 196-238 (631)
149 PRK00025 lpxB lipid-A-disaccha 31.0 1.3E+02 0.0027 29.5 6.4 48 83-142 73-120 (380)
150 TIGR00215 lpxB lipid-A-disacch 30.3 1.2E+02 0.0026 30.3 6.1 40 86-137 80-119 (385)
151 cd04502 SGNH_hydrolase_like_7 30.0 1.8E+02 0.0038 24.8 6.5 53 83-137 38-95 (171)
152 cd07384 MPP_Cdc1_like Saccharo 29.8 51 0.0011 28.9 3.0 14 317-330 133-146 (171)
153 cd02067 B12-binding B12 bindin 29.8 1.4E+02 0.0029 24.1 5.4 53 84-144 39-93 (119)
154 PRK15367 type III secretion sy 29.0 1.5E+02 0.0033 29.8 6.4 88 242-371 295-382 (395)
155 TIGR02855 spore_yabG sporulati 27.0 55 0.0012 31.2 2.7 21 83-103 141-161 (283)
156 cd04501 SGNH_hydrolase_like_4 26.6 2.7E+02 0.0058 23.8 7.1 53 83-137 47-102 (183)
157 PF05582 Peptidase_U57: YabG p 26.4 57 0.0012 31.2 2.8 21 83-103 142-162 (287)
158 PRK13600 putative ribosomal pr 25.6 2.4E+02 0.0051 21.9 5.6 47 87-143 21-67 (84)
159 KOG2863 RNA lariat debranching 25.3 1.1E+02 0.0024 30.4 4.6 52 94-145 29-89 (456)
160 TIGR01768 GGGP-family geranylg 25.3 1.5E+02 0.0033 27.4 5.3 47 90-145 22-69 (223)
161 PRK00994 F420-dependent methyl 25.0 2.9E+02 0.0063 25.9 6.9 44 86-138 51-94 (277)
162 TIGR01012 Sa_S2_E_A ribosomal 24.3 1.2E+02 0.0027 27.4 4.4 29 94-135 107-135 (196)
163 cd01838 Isoamyl_acetate_hydrol 24.1 2.7E+02 0.0059 23.9 6.7 54 84-137 49-113 (199)
164 cd01829 SGNH_hydrolase_peri2 S 23.6 3.1E+02 0.0066 23.8 7.0 53 85-137 49-114 (200)
165 PF07997 DUF1694: Protein of u 23.1 2.2E+02 0.0048 23.5 5.4 48 83-140 50-97 (120)
166 PRK13738 conjugal transfer pil 22.9 1.3E+02 0.0029 27.5 4.4 24 228-259 121-144 (209)
167 cd01139 TroA_f Periplasmic bin 22.9 1.3E+02 0.0028 29.2 4.7 39 91-138 87-125 (342)
168 PF14639 YqgF: Holliday-juncti 22.8 2.7E+02 0.0058 24.0 6.1 24 81-104 49-72 (150)
169 PF03437 BtpA: BtpA family; I 22.8 2.6E+02 0.0056 26.4 6.5 68 59-139 141-208 (254)
170 PF00072 Response_reg: Respons 22.8 2.7E+02 0.0058 21.2 5.9 50 86-143 34-83 (112)
171 COG2382 Fes Enterochelin ester 22.6 98 0.0021 30.0 3.6 41 98-145 241-283 (299)
172 PF04413 Glycos_transf_N: 3-De 22.6 1.3E+02 0.0028 26.8 4.2 45 83-140 83-127 (186)
173 PF10994 DUF2817: Protein of u 22.1 1.3E+02 0.0029 29.7 4.5 42 230-275 53-98 (341)
174 cd07423 MPP_PrpE Bacillus subt 21.9 1E+02 0.0022 28.3 3.6 34 316-351 179-212 (234)
175 PRK01018 50S ribosomal protein 21.7 1.8E+02 0.0038 23.1 4.4 46 87-142 24-69 (99)
176 PRK04169 geranylgeranylglycery 21.5 1.5E+02 0.0032 27.6 4.5 48 89-145 26-74 (232)
177 cd01822 Lysophospholipase_L1_l 21.4 3.9E+02 0.0084 22.5 7.1 53 83-137 52-107 (177)
178 PF02421 FeoB_N: Ferrous iron 20.9 1.5E+02 0.0032 25.8 4.1 50 86-144 69-118 (156)
179 cd07424 MPP_PrpA_PrpB PrpA and 20.8 1E+02 0.0022 27.7 3.3 29 318-348 168-196 (207)
180 COG2248 Predicted hydrolase (m 20.8 1.7E+02 0.0036 27.9 4.5 39 54-106 174-212 (304)
181 TIGR02743 TraW type-F conjugat 20.7 1.5E+02 0.0032 27.0 4.2 24 228-259 123-146 (202)
182 cd01141 TroA_d Periplasmic bin 20.6 1.6E+02 0.0035 25.5 4.5 36 91-139 65-100 (186)
183 COG2039 Pcp Pyrrolidone-carbox 20.6 1.1E+02 0.0023 27.8 3.1 27 79-105 44-70 (207)
184 COG1927 Mtd Coenzyme F420-depe 20.4 2.7E+02 0.0058 25.6 5.6 44 85-137 50-93 (277)
185 cd01836 FeeA_FeeB_like SGNH_hy 20.2 3.5E+02 0.0075 23.3 6.6 52 83-137 56-112 (191)
186 PF01248 Ribosomal_L7Ae: Ribos 20.1 1.7E+02 0.0036 22.6 4.0 45 86-139 22-66 (95)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=8.7e-56 Score=413.87 Aligned_cols=294 Identities=36% Similarity=0.659 Sum_probs=242.3
Q ss_pred CCceeecCCCCeEEEEEecCCCCCC---CCCCCCCCC-----ChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHH
Q 016360 46 DHLRMRAAGGPFKISLFADLHFGEN---AWTDWGPLQ-----DFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANAS 117 (390)
Q Consensus 46 ~~l~~~~~~~~~ki~~isDlH~~~~---~~~~~~~~~-----~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~ 117 (390)
.+|+++. +++|||+|+||+|++.. .|.++.|.+ |.+|..++.++|+.++|||||+|||++++... .++.
T Consensus 44 ~~lr~~~-~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--~Da~ 120 (379)
T KOG1432|consen 44 LKLRFRE-DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--QDAA 120 (379)
T ss_pred eeeeecC-CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc--HhHH
Confidence 3577777 89999999999999987 466776665 88999999999999999999999999999554 3455
Q ss_pred HHHHHHHhhhHhCCCCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhccccc
Q 016360 118 LYWDQAISPTRVRGIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLS 197 (390)
Q Consensus 118 ~~~~~~~~~l~~~~iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~s 197 (390)
..|.++++++.+.+|||++++||||..+. ++|.++|+. +..-+||
T Consensus 121 ~sl~kAvaP~I~~~IPwA~~lGNHDdes~----------------------------------ltr~ql~~~-i~~lP~s 165 (379)
T KOG1432|consen 121 TSLMKAVAPAIDRKIPWAAVLGNHDDESD----------------------------------LTRLQLMKF-ISKLPYS 165 (379)
T ss_pred HHHHHHhhhHhhcCCCeEEEecccccccc----------------------------------cCHHHHHHH-HhcCCCc
Confidence 67889999999999999999999999862 357777764 4445677
Q ss_pred ccCCCCCCC----CCCccceEEEEecCCCcc---CeEEEEEEEeCCCCC-----C--CCCCCHHHHHHHHHHHhhhC---
Q 016360 198 HSKNGPKDL----WPSISNYVLQVSSSHDRQ---MAVAYMYFLDSGGGS-----Y--PEVISSAQAEWFRHKAEEIN--- 260 (390)
Q Consensus 198 f~~~gp~~~----~~g~~ny~l~v~~~~~~~---~~~~~l~~lDS~~g~-----~--~g~i~~~Ql~WL~~~L~~~~--- 260 (390)
+++-.|.+- .+|++||.+.+.+..+.+ .++..++||||+... + -+||.++|++||.....+..
T Consensus 166 ~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~ 245 (379)
T KOG1432|consen 166 LSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPN 245 (379)
T ss_pred cccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhccc
Confidence 776555422 257899999998665432 458899999998532 1 27999999999999984321
Q ss_pred -CCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCC-
Q 016360 261 -PDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQN- 338 (390)
Q Consensus 261 -~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~g- 338 (390)
+-+..|.|+|+|+|++|+...+.+ .+..| .+.|.+.++..+++++++|.++.+||+|||||+|.||||+..+|
T Consensus 246 ~~~~P~p~La~~HIP~~E~~~~~~~----tp~~g-~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~ 320 (379)
T KOG1432|consen 246 SKYNPQPGLAFFHIPLPEFLELESK----TPLIG-VFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGE 320 (379)
T ss_pred CccCCCCceEEEEcccHHHhhccCC----Ccccc-eeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCe
Confidence 111128999999999999887642 33444 46899999999999999999899999999999999999999999
Q ss_pred eeEeecCCccCCCCC--CCCCeeEEEEEEcCCCeeeEEEEcCCCcE
Q 016360 339 LWLCFARHTGYGGYG--NWPRGARILEIMEQPFSLKSWIRMEDGSV 382 (390)
Q Consensus 339 i~~~~~~~tG~~~y~--~~~~G~Riiel~~~~~~~~tw~r~~~g~~ 382 (390)
+|+|||+++||++|| +|+|++||+|++..+.+|+||||++|+..
T Consensus 321 ~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~ 366 (379)
T KOG1432|consen 321 LWLCYGGGAGYGGYGIGGWERRARVFELDLNKDRIKTWKRLDDKPL 366 (379)
T ss_pred EEEEecCCCccCCcCcCCcccceEEEEccccccccceeeecCCCCc
Confidence 999999999999998 69999999999999999999999999854
No 2
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=100.00 E-value=1.5e-32 Score=250.15 Aligned_cols=197 Identities=43% Similarity=0.800 Sum_probs=154.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
++|||+|+||+|++......++...+..+.+.+.+++++.+||+||++||++++..... ++...+.++++.+.+.++|+
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-~~~~~~~~~~~~l~~~~~p~ 79 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-NSTSALDKAVSPMIDRKIPW 79 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-HHHHHHHHHHHHHHHcCCCE
Confidence 36999999999998864321222244567888888898899999999999999776432 13455678888888889999
Q ss_pred EEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceE
Q 016360 135 ASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYV 214 (390)
Q Consensus 135 ~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~ 214 (390)
++++||||..
T Consensus 80 ~~~~GNHD~~---------------------------------------------------------------------- 89 (199)
T cd07383 80 AATFGNHDGY---------------------------------------------------------------------- 89 (199)
T ss_pred EEECccCCCC----------------------------------------------------------------------
Confidence 9999999932
Q ss_pred EEEecCCCccCeEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhC--CCCCCceEEEEccCchhhhccCCCCCCCCCcc
Q 016360 215 LQVSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEIN--PDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCV 292 (390)
Q Consensus 215 l~v~~~~~~~~~~~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~~--~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~ 292 (390)
++++++|++||+++|++.. .+..+|.++|+|||+.+....|.. ...+.
T Consensus 90 ---------------------------g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~---~~~~~ 139 (199)
T cd07383 90 ---------------------------DWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEG---KGKVP 139 (199)
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcc---cCCCC
Confidence 1367899999999999974 123468999999999988766531 12233
Q ss_pred CccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCC
Q 016360 293 GSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG 353 (390)
Q Consensus 293 g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~ 353 (390)
|. +.|...+...+++++++|.+.++|+++||||+|.+++|..++|+++|+|+.|||++||
T Consensus 140 g~-~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 140 GI-NNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred cc-CCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 43 3455556667789999999999999999999999999999999999999999999986
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=100.00 E-value=5.9e-32 Score=258.22 Aligned_cols=241 Identities=19% Similarity=0.167 Sum_probs=161.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHH---hh--cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhH
Q 016360 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVL---DH--ETPDFVIYLGDVITANNMAVANASLYWDQAISPTR 128 (390)
Q Consensus 54 ~~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l---~~--~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~ 128 (390)
.+++||+||||+|+...... ...+.++.+.+++++ ++ .+||+||++||++++... +.++.+.+.+.
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~---~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~------~~~~~~~~~l~ 82 (275)
T PRK11148 12 EARVRILQITDTHLFADEHE---TLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSS------EAYQHFAEGIA 82 (275)
T ss_pred CCCEEEEEEcCcccCCCCCC---ceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCH------HHHHHHHHHHh
Confidence 35799999999998543211 111223334444443 33 379999999999997652 22456677778
Q ss_pred hCCCCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCC
Q 016360 129 VRGIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWP 208 (390)
Q Consensus 129 ~~~iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~ 208 (390)
++++|+++++||||.... + .+.+.. .. + .+
T Consensus 83 ~l~~Pv~~v~GNHD~~~~-------------------------------~-----~~~~~~----~~--~---~~----- 112 (275)
T PRK11148 83 PLRKPCVWLPGNHDFQPA-------------------------------M-----YSALQD----AG--I---SP----- 112 (275)
T ss_pred hcCCcEEEeCCCCCChHH-------------------------------H-----HHHHhh----cC--C---Cc-----
Confidence 889999999999998630 0 011110 00 0 00
Q ss_pred CccceEEEEecCCCccCeEEEEEEEeCCC-CCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCC
Q 016360 209 SISNYVLQVSSSHDRQMAVAYMYFLDSGG-GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGV 287 (390)
Q Consensus 209 g~~ny~l~v~~~~~~~~~~~~l~~lDS~~-g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~ 287 (390)
.+.+.. ...+++++|||.. +...|+++++|++||+++|++.++ .+.+||+||||......|.
T Consensus 113 ---~~~~~~-------~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~---~~~vv~~hH~P~~~~~~~~---- 175 (275)
T PRK11148 113 ---AKHVLI-------GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPE---RHTLVLLHHHPLPAGCAWL---- 175 (275)
T ss_pred ---cceEEe-------cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCC---CCeEEEEcCCCCCCCcchh----
Confidence 111111 1246889999874 334578999999999999998754 3578888876643222221
Q ss_pred CCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCC--------CCCCCCCee
Q 016360 288 HKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG--------GYGNWPRGA 359 (390)
Q Consensus 288 ~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~--------~y~~~~~G~ 359 (390)
+.. +..| ..+|+++|+++++|+++||||+|.+ ++..++|+.++.+|++|++ .+...++||
T Consensus 176 d~~--~l~n---------~~~l~~ll~~~~~v~~vl~GH~H~~-~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~ 243 (275)
T PRK11148 176 DQH--SLRN---------AHELAEVLAKFPNVKAILCGHIHQE-LDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGW 243 (275)
T ss_pred hcc--CCCC---------HHHHHHHHhcCCCceEEEecccChH-HhceECCEEEEEcCCCcCCcCCCCCccccccCCCcE
Confidence 110 1111 1369999998889999999999995 4777899999999999974 123567899
Q ss_pred EEEEEEcCCCeeeEEEEcCCCcE
Q 016360 360 RILEIMEQPFSLKSWIRMEDGSV 382 (390)
Q Consensus 360 Riiel~~~~~~~~tw~r~~~g~~ 382 (390)
|++++.+++....+++|++++..
T Consensus 244 ~~~~l~~~g~~~~~~~~~~~~~~ 266 (275)
T PRK11148 244 RELELHADGSLETEVHRLADTEF 266 (275)
T ss_pred EEEEEcCCCcEEEEEEEcCCCCc
Confidence 99999988777777799988643
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=3.7e-28 Score=230.31 Aligned_cols=243 Identities=21% Similarity=0.222 Sum_probs=152.4
Q ss_pred CCCeEEEEEecCCCCCCCCC-CCCCCCChhH---HHHHHHHHhhc--CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhh
Q 016360 54 GGPFKISLFADLHFGENAWT-DWGPLQDFNS---VKVMSTVLDHE--TPDFVIYLGDVITANNMAVANASLYWDQAISPT 127 (390)
Q Consensus 54 ~~~~ki~~isDlH~~~~~~~-~~~~~~~~~~---~~~i~~~l~~~--~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l 127 (390)
+++|+|+++||+|++..... ..+.....++ ++.+.+.+++. +||+||++|||++++...... ...++.+.+.+
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~-~~~~~~~~~~~ 80 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELR-ERQVSDLKDVL 80 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhH-HHHHHHHHHHH
Confidence 46899999999999964211 0011111223 34444445554 999999999999977643111 12234455555
Q ss_pred HhC--CCCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCC
Q 016360 128 RVR--GIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKD 205 (390)
Q Consensus 128 ~~~--~iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~ 205 (390)
.+. ++|+++++||||..... .....+.+....
T Consensus 81 ~~~~~~vp~~~i~GNHD~~~~~--------------------------------~~~~~~~f~~~~-------------- 114 (262)
T cd07395 81 SLLDPDIPLVCVCGNHDVGNTP--------------------------------TEESIKDYRDVF-------------- 114 (262)
T ss_pred hhccCCCcEEEeCCCCCCCCCC--------------------------------ChhHHHHHHHHh--------------
Confidence 444 79999999999986310 000011111111
Q ss_pred CCCCccceEEEEecCCCccCeEEEEEEEeCCCCC---CCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccC
Q 016360 206 LWPSISNYVLQVSSSHDRQMAVAYMYFLDSGGGS---YPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVA 282 (390)
Q Consensus 206 ~~~g~~ny~l~v~~~~~~~~~~~~l~~lDS~~g~---~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~ 282 (390)
|...|.+.. ..+++++|||.... ..+.+.++|++||++.|++.++.+..++|||+|||+.......
T Consensus 115 ---g~~~y~~~~--------~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 183 (262)
T cd07395 115 ---GDDYFSFWV--------GGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDE 183 (262)
T ss_pred ---CCcceEEEE--------CCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCC
Confidence 112344432 23578888885311 1135889999999999998862223579999999997432111
Q ss_pred CCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCCCCCCeeEEE
Q 016360 283 PRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARIL 362 (390)
Q Consensus 283 ~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~~~~~G~Rii 362 (390)
.. ..++. ..+...++.++|+++ +|.++||||+|.+.. ..+.|+.++.++++|+ .++..++|||++
T Consensus 184 ~~--------~~~~~----~~~~~~~l~~ll~~~-~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~-~~~~~~~g~~~~ 248 (262)
T cd07395 184 ED--------SYFNI----PKSVRKPLLDKFKKA-GVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGA-QLGNDKSGLRIV 248 (262)
T ss_pred Cc--------ccCCc----CHHHHHHHHHHHHhc-CceEEEECccccCCc-eEECCEEEEEcCceec-ccCCCCCCcEEE
Confidence 00 00110 011224688888775 899999999999885 5678999999999985 556678999999
Q ss_pred EEEcCCC
Q 016360 363 EIMEQPF 369 (390)
Q Consensus 363 el~~~~~ 369 (390)
++++++.
T Consensus 249 ~v~~~~~ 255 (262)
T cd07395 249 KVTEDKI 255 (262)
T ss_pred EECCCce
Confidence 9987753
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.96 E-value=7.3e-28 Score=229.06 Aligned_cols=230 Identities=20% Similarity=0.239 Sum_probs=151.8
Q ss_pred eEEEEEecCCCCCCCCC--CCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 57 FKISLFADLHFGENAWT--DWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
|||+|+||+|++..... .++ ......++.+.+.+++.+||+||++|||++++... ..+.++.+.+.+.++++|+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~-~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~---~~~~~~~~~~~l~~l~~p~ 76 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYY-RNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR---AEEALDAVLAILDRLKGPV 76 (267)
T ss_pred CeEEEEeccccccCCCcccchH-HHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch---HHHHHHHHHHHHHhcCCCE
Confidence 79999999998764311 111 01223334444445567899999999999877532 2245667788888899999
Q ss_pred EEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceE
Q 016360 135 ASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYV 214 (390)
Q Consensus 135 ~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~ 214 (390)
++++||||..... ...+... . ... .+...|.
T Consensus 77 ~~v~GNHD~~~~~-----------------------------------~~~~~~~-----~--~~~-------~~~~yys 107 (267)
T cd07396 77 HHVLGNHDLYNPS-----------------------------------REYLLLY-----T--LLG-------LGAPYYS 107 (267)
T ss_pred EEecCcccccccc-----------------------------------Hhhhhcc-----c--ccC-------CCCceEE
Confidence 9999999997410 0000000 0 000 0112233
Q ss_pred EEEecCCCccCeEEEEEEEeCCCC-------------------------------CCCCCCCHHHHHHHHHHHhhhCCCC
Q 016360 215 LQVSSSHDRQMAVAYMYFLDSGGG-------------------------------SYPEVISSAQAEWFRHKAEEINPDS 263 (390)
Q Consensus 215 l~v~~~~~~~~~~~~l~~lDS~~g-------------------------------~~~g~i~~~Ql~WL~~~L~~~~~~~ 263 (390)
+.. ..+++++|||... .+.|+++++|++||+++|++.++.
T Consensus 108 f~~--------~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~- 178 (267)
T cd07396 108 FSP--------GGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADAN- 178 (267)
T ss_pred Eec--------CCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhc-
Confidence 322 1245556665321 135789999999999999987542
Q ss_pred CCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEee
Q 016360 264 RVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCF 343 (390)
Q Consensus 264 ~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~ 343 (390)
..++|||+|||+..... .. ....+| ...+.++|.++++|+++||||+|.+. ...++|+.++.
T Consensus 179 ~~~viV~~Hhp~~~~~~-~~-------~~~~~~---------~~~~~~ll~~~~~V~~v~~GH~H~~~-~~~~~gi~~~~ 240 (267)
T cd07396 179 GEKVIIFSHFPLHPEST-SP-------HGLLWN---------HEEVLSILRAYGCVKACISGHDHEGG-YAQRHGIHFLT 240 (267)
T ss_pred CCeEEEEEeccCCCCCC-Cc-------cccccC---------HHHHHHHHHhCCCEEEEEcCCcCCCC-ccccCCeeEEE
Confidence 25799999999864221 00 000111 13588899887899999999999987 45679999999
Q ss_pred cCCccCCCCCCCCCeeEEEEEEcCC
Q 016360 344 ARHTGYGGYGNWPRGARILEIMEQP 368 (390)
Q Consensus 344 ~~~tG~~~y~~~~~G~Riiel~~~~ 368 (390)
+|+++++ ++...-+-+|+++++.
T Consensus 241 ~~a~~~~--~~~~~~~~~~~~~~~~ 263 (267)
T cd07396 241 LEGMVET--PPESNAFGVVIVYEDR 263 (267)
T ss_pred echhhcC--CCCCCceEEEEEeCCc
Confidence 9999987 7667788999999885
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.95 E-value=1.2e-26 Score=216.56 Aligned_cols=228 Identities=20% Similarity=0.256 Sum_probs=150.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE--TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~--~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
||+|+||+|++......+........++.+.+.+++. +||+||++|||++..... .++.+.+.+.++++|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~------~~~~~~~~l~~~~~p~~ 74 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPE------SYERLRELLAALPIPVY 74 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHH------HHHHHHHHHhhcCCCEE
Confidence 6999999999964311110011123444455555555 899999999999986531 23456666677799999
Q ss_pred EEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceEE
Q 016360 136 SIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVL 215 (390)
Q Consensus 136 ~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~l 215 (390)
+|+||||.... + +. . +..... . .+..+|.+
T Consensus 75 ~v~GNHD~~~~-------------------------------~----~~-~----~~~~~~---~-------~~~~~~~~ 104 (240)
T cd07402 75 LLPGNHDDRAA-------------------------------M----RA-V----FPELPP---A-------PGFVQYVV 104 (240)
T ss_pred EeCCCCCCHHH-------------------------------H----HH-h----hccccc---c-------ccccceeE
Confidence 99999998530 0 00 0 000000 0 12234555
Q ss_pred EEecCCCccCeEEEEEEEeCCCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCc
Q 016360 216 QVSSSHDRQMAVAYMYFLDSGGG-SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGS 294 (390)
Q Consensus 216 ~v~~~~~~~~~~~~l~~lDS~~g-~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~ 294 (390)
.+ ..++++++||... ...++++++|++||++.|++.+. .++|+++||||......+. + .
T Consensus 105 ~~--------~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~~---~~~il~~H~pp~~~~~~~~----~-----~ 164 (240)
T cd07402 105 DL--------GGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAPD---KPTLVFLHHPPFPVGIAWM----D-----A 164 (240)
T ss_pred ec--------CCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCCC---CCEEEEECCCCccCCchhh----h-----h
Confidence 43 3468899998642 23467999999999999998753 5799999999964321110 0 0
Q ss_pred cccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCC-----C---CCCCCCeeEEEEEEc
Q 016360 295 INKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG-----G---YGNWPRGARILEIME 366 (390)
Q Consensus 295 ~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~-----~---y~~~~~G~Riiel~~ 366 (390)
.... ...++.++|.++++|+++||||+|.+. ....+|++++.++++|+. . +.....||+.+.|.+
T Consensus 165 ~~~~------~~~~~~~~l~~~~~v~~v~~GH~H~~~-~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 165 IGLR------NAEALAAVLARHPNVRAILCGHVHRPI-DGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred hhCC------CHHHHHHHHhcCCCeeEEEECCcCchH-HeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEec
Confidence 0000 124689999887899999999999954 677899999999999983 1 123456999999977
Q ss_pred CC
Q 016360 367 QP 368 (390)
Q Consensus 367 ~~ 368 (390)
++
T Consensus 238 ~~ 239 (240)
T cd07402 238 DG 239 (240)
T ss_pred CC
Confidence 64
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=4.8e-23 Score=198.19 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=158.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 54 ~~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
+.++||++++|+|.+.. ...++++.+.+. ..+|||||++||++++...........|.+.++++. ..+|
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~-~~~P 70 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA-SYVP 70 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH-hcCC
Confidence 46799999999998621 123344443332 478999999999997554321111122334444443 3799
Q ss_pred EEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccce
Q 016360 134 WASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNY 213 (390)
Q Consensus 134 ~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny 213 (390)
+++++||||..... ...... .+ ..+. .+ . ..++. ..+...|
T Consensus 71 ~~~~~GNHD~~~~~--------~~~~~~---------------~~--~~~~-~~----------~-~~~~~--~~~~~~Y 111 (294)
T cd00839 71 YMVTPGNHEADYNF--------SFYKIK---------------AF--FPRF-RF----------P-HSPSG--STSNLWY 111 (294)
T ss_pred cEEcCcccccccCC--------CCcccc---------------cc--cccc-cc----------c-CCCCC--CCCCceE
Confidence 99999999997410 000000 00 0000 00 0 00000 0122345
Q ss_pred EEEEecCCCccCeEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccC
Q 016360 214 VLQVSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 293 (390)
Q Consensus 214 ~l~v~~~~~~~~~~~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g 293 (390)
.+.+ ..+++++|||......+.+.++|++||++.|++.++.+...+||++|+|+........ .+
T Consensus 112 sf~~--------g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~------~~-- 175 (294)
T cd00839 112 SFDV--------GPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHD------DC-- 175 (294)
T ss_pred EEee--------CCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCcccc------cc--
Confidence 5554 2468999999743223568999999999999987653222489999999964321100 00
Q ss_pred ccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccC---------------CCCeeEeecCCccCCCCC-----
Q 016360 294 SINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCP---------------YQNLWLCFARHTGYGGYG----- 353 (390)
Q Consensus 294 ~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~---------------~~gi~~~~~~~tG~~~y~----- 353 (390)
.........|.++|.++ +|.++||||+|.+..... .+|+.++..++.|...+.
T Consensus 176 ------~~~~~~~~~l~~ll~~~-~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~ 248 (294)
T cd00839 176 ------IEGEKMRAALEDLFYKY-GVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSA 248 (294)
T ss_pred ------chhHHHHHHHHHHHHHh-CCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccC
Confidence 00111224577888776 899999999998753322 267777777777742211
Q ss_pred ---------CCCCeeEEEEEEcCCCeeeEEEEcCCCcEEEEEeeC
Q 016360 354 ---------NWPRGARILEIMEQPFSLKSWIRMEDGSVHSEVILS 389 (390)
Q Consensus 354 ---------~~~~G~Riiel~~~~~~~~tw~r~~~g~~~~~~~~~ 389 (390)
....|+-++++..+..-.-.|++..+|+++++++|.
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v~D~f~i~ 293 (294)
T cd00839 249 PPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVVIDSFWII 293 (294)
T ss_pred CCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeEEEEEEEe
Confidence 124788888888653445667899999999999885
No 8
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.91 E-value=3.9e-23 Score=190.28 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=125.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
|+|++++|+|++.... +..-...++.+.+.+++.+||+||++||+++...... ....+.++++.+.+.++|+++
T Consensus 1 f~~~~~~D~q~~~~~~----~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~--~~~~~~~~~~~l~~~~~p~~~ 74 (214)
T cd07399 1 FTLAVLPDTQYYTESY----PEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDA--EWEAADKAFARLDKAGIPYSV 74 (214)
T ss_pred CEEEEecCCCcCCcCC----HHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHH--HHHHHHHHHHHHHHcCCcEEE
Confidence 6899999999976421 1111223345555556678999999999999776221 223344566666656899999
Q ss_pred EccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceEEE
Q 016360 137 IFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQ 216 (390)
Q Consensus 137 v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~l~ 216 (390)
++||||.-.
T Consensus 75 ~~GNHD~~~----------------------------------------------------------------------- 83 (214)
T cd07399 75 LAGNHDLVL----------------------------------------------------------------------- 83 (214)
T ss_pred ECCCCcchh-----------------------------------------------------------------------
Confidence 999999531
Q ss_pred EecCCCccCeEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccc
Q 016360 217 VSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSIN 296 (390)
Q Consensus 217 v~~~~~~~~~~~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n 296 (390)
.+|+. ++++|++||+++|++.+. .|+|||+|||+..... +. + .+....+
T Consensus 84 ---------------~ld~~-------~~~~ql~WL~~~L~~~~~---~~~iv~~H~p~~~~~~-~~----~-~~~~~~~ 132 (214)
T cd07399 84 ---------------ALEFG-------PRDEVLQWANEVLKKHPD---RPAILTTHAYLNCDDS-RP----D-SIDYDSD 132 (214)
T ss_pred ---------------hCCCC-------CCHHHHHHHHHHHHHCCC---CCEEEEecccccCCCC-cC----c-ccccccc
Confidence 01111 368999999999998653 5799999999863221 11 0 0000000
Q ss_pred cccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCe--------eEeecCCccCCCCCCCCCeeEEEEEEcCC
Q 016360 297 KESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNL--------WLCFARHTGYGGYGNWPRGARILEIMEQP 368 (390)
Q Consensus 297 ~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi--------~~~~~~~tG~~~y~~~~~G~Riiel~~~~ 368 (390)
.+. ....|.++|.++++|+++||||+|..... ...|+ .++..... ..+++ ...+|++++++++
T Consensus 133 ~~~-----~~~~~~~ll~~~~~V~~v~~GH~H~~~~~-~~~~~~~~g~~v~~~~~~~q~--~~~~g-~~~~r~~~f~~~~ 203 (214)
T cd07399 133 VND-----GQQIWDKLVKKNDNVFMVLSGHVHGAGRT-TLVSVGDAGRTVHQMLADYQG--EPNGG-NGFLRLLEFDPDN 203 (214)
T ss_pred ccc-----HHHHHHHHHhCCCCEEEEEccccCCCceE-EEcccCCCCCEeeEEeecccC--CCCCC-cceEEEEEEecCC
Confidence 010 11246688888889999999999986533 33221 12212211 12233 4569999999987
Q ss_pred CeeeEE
Q 016360 369 FSLKSW 374 (390)
Q Consensus 369 ~~~~tw 374 (390)
..|..+
T Consensus 204 ~~i~~~ 209 (214)
T cd07399 204 NKIDVR 209 (214)
T ss_pred CEEEEE
Confidence 666554
No 9
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.90 E-value=7.4e-22 Score=196.49 Aligned_cols=133 Identities=15% Similarity=0.257 Sum_probs=95.2
Q ss_pred CccceEEEEecCCCccCeEEEEEEEeCCC--CCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCC
Q 016360 209 SISNYVLQVSSSHDRQMAVAYMYFLDSGG--GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFG 286 (390)
Q Consensus 209 g~~ny~l~v~~~~~~~~~~~~l~~lDS~~--g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~ 286 (390)
|...|+|.+. ..+++++|||.. +.+.|.|+++|++||+++|++.+. .++|||+|||+......+.+
T Consensus 290 G~~YYSFd~~-------ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~---k~VVVf~HHPp~s~g~~~~D-- 357 (496)
T TIGR03767 290 GTGYYTFDIA-------GGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSD---TLFVLFSHHTSWSMVNELTD-- 357 (496)
T ss_pred CCceEEEEeE-------CCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCC---CCEEEEECCCCccccccccc--
Confidence 5667888753 347999999974 467789999999999999997543 47999999998753322211
Q ss_pred CCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCC---------CeeEeecCCccCCCCCCCCC
Q 016360 287 VHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ---------NLWLCFARHTGYGGYGNWPR 357 (390)
Q Consensus 287 ~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~---------gi~~~~~~~tG~~~y~~~~~ 357 (390)
....+ .+.. ...+|+++|.++++|+++||||+|.|+ +..+. |+|-+.+ +++-++|.
T Consensus 358 --p~~pg-~~~~------n~~eLldLL~~ypnV~aVfsGHvH~n~-i~~~~~~~~~~p~~gfweI~T-----aSlvdfPq 422 (496)
T TIGR03767 358 --PVDPG-EKRH------LGTELVSLLLEHPNVLAWVNGHTHSNK-ITAHRRVEGVGKDKGFWEINT-----ASHIDFPQ 422 (496)
T ss_pred --ccccc-cccc------CHHHHHHHHhcCCCceEEEECCcCCCc-cccccCCCCCCCcCCeEEEec-----cccccCCC
Confidence 00001 0001 124799999999999999999999987 44443 4554443 36778999
Q ss_pred eeEEEEEEcCC
Q 016360 358 GARILEIMEQP 368 (390)
Q Consensus 358 G~Riiel~~~~ 368 (390)
-||||||..+.
T Consensus 423 ~~Ri~Ei~~n~ 433 (496)
T TIGR03767 423 QGRIIELADNQ 433 (496)
T ss_pred CceEEEEEeCC
Confidence 99999998753
No 10
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.88 E-value=3.1e-21 Score=184.13 Aligned_cols=234 Identities=18% Similarity=0.217 Sum_probs=142.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhh---hhHHHHHHHHHhhhHhCCCC
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAV---ANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~---~~~~~~~~~~~~~l~~~~iP 133 (390)
++|++++|.-.+.. .......+.|.+++++.+|||||++||++.+..... ......+.++++.+. +++|
T Consensus 1 ~~f~~~gD~g~~~~-------~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~-~~~P 72 (277)
T cd07378 1 LRFLALGDWGGGGT-------AGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS-LQVP 72 (277)
T ss_pred CeEEEEeecCCCCC-------HHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh-hcCC
Confidence 47899999987521 122345567777777789999999999985433211 111122334444433 6899
Q ss_pred EEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccce
Q 016360 134 WASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNY 213 (390)
Q Consensus 134 ~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny 213 (390)
+++++||||.... + .. .....+ . . + .|+.. .+...|
T Consensus 73 ~~~v~GNHD~~~~-----~-~~---------------------------~~~~~~--~--~---~---~~~~~-~~~~~y 108 (277)
T cd07378 73 WYLVLGNHDYSGN-----V-SA---------------------------QIDYTK--R--P---N---SPRWT-MPAYYY 108 (277)
T ss_pred eEEecCCcccCCC-----c-hh---------------------------eeehhc--c--C---C---CCCcc-Ccchhe
Confidence 9999999999741 0 00 000000 0 0 0 00000 011234
Q ss_pred EEEEecCCCccCeEEEEEEEeCCCC------------CCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhcc
Q 016360 214 VLQVSSSHDRQMAVAYMYFLDSGGG------------SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKV 281 (390)
Q Consensus 214 ~l~v~~~~~~~~~~~~l~~lDS~~g------------~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~ 281 (390)
.+.....+ ....+++++|||... ...+.+.++|++||++.|++.++ .++||++|||+......
T Consensus 109 ~~~~~~~~--~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~~---~~~iv~~H~P~~~~~~~ 183 (277)
T cd07378 109 RVSFPFPS--SDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAASTA---DWKIVVGHHPIYSSGEH 183 (277)
T ss_pred EEEeecCC--CCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhcCC---CeEEEEeCccceeCCCC
Confidence 44432110 023688999999742 12356899999999999998765 46899999998643210
Q ss_pred CCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCC--CeeEeecCCccCCCC-------
Q 016360 282 APRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ--NLWLCFARHTGYGGY------- 352 (390)
Q Consensus 282 ~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~--gi~~~~~~~tG~~~y------- 352 (390)
+ . . ......|.++|.++ +|.++||||+|... ....+ |+.++.+++.|....
T Consensus 184 -----------~--~-~----~~~~~~l~~l~~~~-~v~~vl~GH~H~~~-~~~~~~~~~~~i~~G~~~~~~~~~~~~~~ 243 (277)
T cd07378 184 -----------G--P-T----SCLVDRLLPLLKKY-KVDAYLSGHDHNLQ-HIKDDGSGTSFVVSGAGSKARPSVKHIDK 243 (277)
T ss_pred -----------C--C-c----HHHHHHHHHHHHHc-CCCEEEeCCcccce-eeecCCCCcEEEEeCCCcccCCCCCccCc
Confidence 0 0 0 11124688888876 69999999999876 33445 888887776665211
Q ss_pred --------CCCCCeeEEEEEEcC
Q 016360 353 --------GNWPRGARILEIMEQ 367 (390)
Q Consensus 353 --------~~~~~G~Riiel~~~ 367 (390)
.....||.+++++.+
T Consensus 244 ~~~~~~~~~~~~~Gy~~i~v~~~ 266 (277)
T cd07378 244 VPQFFSGFTSSGGGFAYLELTKE 266 (277)
T ss_pred ccccccccccCCCCEEEEEEecC
Confidence 123589999999866
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.86 E-value=2.2e-20 Score=176.65 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=116.2
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhh---hhHHHHHHHHHhhhHh---C-C
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAV---ANASLYWDQAISPTRV---R-G 131 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~---~~~~~~~~~~~~~l~~---~-~ 131 (390)
|+|+||+|++... +.......+.+.+.+++.+||+||++||+++...... .+....|+.+.+.+.. . .
T Consensus 2 ~~~iSDlH~g~~~-----~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T cd07401 2 FVHISDIHVSSFH-----PPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINK 76 (256)
T ss_pred EEEecccccCCcC-----chhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCc
Confidence 7999999999642 1111111245666778889999999999998765221 1111223344443322 2 5
Q ss_pred CCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccC-CCCCCCCCCc
Q 016360 132 IPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSK-NGPKDLWPSI 210 (390)
Q Consensus 132 iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~-~gp~~~~~g~ 210 (390)
+|++.|+||||..+.. ... . ..+.... |.. .++ ..
T Consensus 77 ~p~~~v~GNHD~~~~~----~~~-------------------------~--~~~~~~~--------y~~~~~~-----~~ 112 (256)
T cd07401 77 EKWFDIRGNHDLFNIP----SLD-------------------------S--ENNYYRK--------YSATGRD-----GS 112 (256)
T ss_pred ceEEEeCCCCCcCCCC----Ccc-------------------------c--hhhHHHH--------hheecCC-----Cc
Confidence 8999999999996410 000 0 0000100 110 000 00
Q ss_pred cceEEEEecCCCccCeEEEEEEEeCCCC-------CCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCC
Q 016360 211 SNYVLQVSSSHDRQMAVAYMYFLDSGGG-------SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAP 283 (390)
Q Consensus 211 ~ny~l~v~~~~~~~~~~~~l~~lDS~~g-------~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~ 283 (390)
..|... .. .+.+.+++|||... .+.|+++++|++||++.|++.++. .++|||+|||+....+.
T Consensus 113 ~~~~~~-~~-----~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~~--~~~IV~~HhP~~~~~~~-- 182 (256)
T cd07401 113 FSFSHT-TR-----FGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTNS--NYTIWFGHYPTSTIISP-- 182 (256)
T ss_pred cceEEE-ec-----CCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcccC--CeEEEEEcccchhccCC--
Confidence 112111 11 13467888888631 124789999999999999987543 36899999998532110
Q ss_pred CCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCc
Q 016360 284 RFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDW 332 (390)
Q Consensus 284 ~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~ 332 (390)
...+ ..++.++|.++ +|.++||||+|.+..
T Consensus 183 ---------~~~~---------~~~~~~ll~~~-~v~~vl~GH~H~~~~ 212 (256)
T cd07401 183 ---------SAKS---------SSKFKDLLKKY-NVTAYLCGHLHPLGG 212 (256)
T ss_pred ---------Ccch---------hHHHHHHHHhc-CCcEEEeCCccCCCc
Confidence 0001 12488889876 899999999999774
No 12
>PLN02533 probable purple acid phosphatase
Probab=99.83 E-value=7e-19 Score=177.39 Aligned_cols=256 Identities=21% Similarity=0.263 Sum_probs=146.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 54 ~~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
..++||++++|+|.... ...+++. +++.+|||||++|||++..... .....|.+.++++. ..+|
T Consensus 137 ~~~~~f~v~GDlG~~~~---------~~~tl~~----i~~~~pD~vl~~GDl~y~~~~~--~~wd~f~~~i~~l~-s~~P 200 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW---------TKSTLEH----VSKWDYDVFILPGDLSYANFYQ--PLWDTFGRLVQPLA-SQRP 200 (427)
T ss_pred CCCeEEEEEEeCCCCcc---------cHHHHHH----HHhcCCCEEEEcCccccccchH--HHHHHHHHHhhhHh-hcCc
Confidence 35799999999975421 1223332 3457899999999999865421 11122334555554 3699
Q ss_pred EEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccce
Q 016360 134 WASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNY 213 (390)
Q Consensus 134 ~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny 213 (390)
+++++||||..... . .... .|... .+. .. ..+...++ .+...|
T Consensus 201 ~m~~~GNHE~~~~~---~-~~~~--------------------~f~~y--~~r----f~---mP~~~~g~----~~~~yY 243 (427)
T PLN02533 201 WMVTHGNHELEKIP---I-LHPE--------------------KFTAY--NAR----WR---MPFEESGS----TSNLYY 243 (427)
T ss_pred eEEeCccccccccc---c-ccCc--------------------Cccch--hhc----cc---CCccccCC----CCCceE
Confidence 99999999987410 0 0000 01000 000 00 00100011 122346
Q ss_pred EEEEecCCCccCeEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCc-eEEEEccCchhhhccCCCCCCCCCcc
Q 016360 214 VLQVSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVP-EIVFWHIPSKAYKKVAPRFGVHKPCV 292 (390)
Q Consensus 214 ~l~v~~~~~~~~~~~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p-~ivF~H~P~~~~~~~~~~~~~~~~~~ 292 (390)
.|.+ ..+++++|||... + ....+|++||+++|++.+.+. .| +||++|+|+....... .
T Consensus 244 Sfd~--------g~vhfI~Lds~~~-~--~~~~~Q~~WLe~dL~~~~r~~-~pwiIv~~H~P~y~s~~~~---------~ 302 (427)
T PLN02533 244 SFNV--------YGVHIIMLGSYTD-F--EPGSEQYQWLENNLKKIDRKT-TPWVVAVVHAPWYNSNEAH---------Q 302 (427)
T ss_pred EEEE--------CCEEEEEEeCCcc-c--cCchHHHHHHHHHHHhhcccC-CCEEEEEeCCCeeeccccc---------C
Confidence 6654 2468999998632 1 246899999999999875432 35 7899999986432110 0
Q ss_pred CccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCccc-------CCCCeeEeecCCccCC-C----CC-------
Q 016360 293 GSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCC-------PYQNLWLCFARHTGYG-G----YG------- 353 (390)
Q Consensus 293 g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~-------~~~gi~~~~~~~tG~~-~----y~------- 353 (390)
+. .+... ....|.++|.+ .+|.++||||+|.++-.+ ...|..++..+..|.. + +.
T Consensus 303 ~~--~~~~~---~r~~le~Ll~~-~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s 376 (427)
T PLN02533 303 GE--KESVG---MKESMETLLYK-ARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDIS 376 (427)
T ss_pred Cc--chhHH---HHHHHHHHHHH-hCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCce
Confidence 10 01111 11357777766 599999999999875322 1245555555555531 1 11
Q ss_pred ---CCCCeeEEEEEEcCCCeeeEEEEcCCCc--EEEEEeeC
Q 016360 354 ---NWPRGARILEIMEQPFSLKSWIRMEDGS--VHSEVILS 389 (390)
Q Consensus 354 ---~~~~G~Riiel~~~~~~~~tw~r~~~g~--~~~~~~~~ 389 (390)
...-|+-.+++.....-.=+|+|..+|. +.++|.|+
T Consensus 377 ~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~ 417 (427)
T PLN02533 377 LFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLK 417 (427)
T ss_pred eEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEE
Confidence 1135666666655545566789987774 78888875
No 13
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.83 E-value=1.3e-18 Score=171.65 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=88.8
Q ss_pred CCccceEEEEecCCCccCeEEEEEEEeCCC--------CCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhh-
Q 016360 208 PSISNYVLQVSSSHDRQMAVAYMYFLDSGG--------GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAY- 278 (390)
Q Consensus 208 ~g~~ny~l~v~~~~~~~~~~~~l~~lDS~~--------g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~- 278 (390)
.|..+|.+...+. ..+++++|||.. |.|.|.|+++|++||+++|++.+++ .|.+|++|||+...
T Consensus 290 ~G~~yYsFd~~g~-----vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~--~p~VVV~hHpPi~t~ 362 (492)
T TIGR03768 290 NDFACYSFVPKSD-----VPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQAD--GQLMIIAAHIPIAVS 362 (492)
T ss_pred cCcceeEEecCCC-----cceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCC--CceEEEEeCCCcccC
Confidence 3455777764210 135899999874 6688999999999999999988642 35566655555432
Q ss_pred hc-cCCCCCC-CCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCC---------CCeeEeecCCc
Q 016360 279 KK-VAPRFGV-HKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPY---------QNLWLCFARHT 347 (390)
Q Consensus 279 ~~-~~~~~~~-~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~---------~gi~~~~~~~t 347 (390)
.. .....+. ... + .+.........+|+++|.++++|+++||||.|.+. +..+ .|.|-+-+
T Consensus 363 gi~~md~w~~~~~~--~---~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~-v~a~~~p~~~~pe~gFWeveT--- 433 (492)
T TIGR03768 363 PIGSEMEWWLGAAD--A---NPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNT-VKAFPSPDPARPEYGFWQVET--- 433 (492)
T ss_pred Cccchhhhcccccc--c---cccccccccHHHHHHHHhcCCCeEEEEcCCccccc-ccccCCCCCCCCcCceEEEee---
Confidence 11 1000000 000 0 00000011123799999999999999999999976 4433 23333322
Q ss_pred cCCCCCCCCCeeEEEEEEcCC
Q 016360 348 GYGGYGNWPRGARILEIMEQP 368 (390)
Q Consensus 348 G~~~y~~~~~G~Riiel~~~~ 368 (390)
.+.-++|.-+|+|||..+.
T Consensus 434 --aSl~DfPQq~R~~Ei~~n~ 452 (492)
T TIGR03768 434 --ASLRDFPQQFRTFEIYLNS 452 (492)
T ss_pred --hhhccchhhceEEEEEeCC
Confidence 2456899999999998764
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.81 E-value=1.4e-18 Score=161.88 Aligned_cols=205 Identities=17% Similarity=0.103 Sum_probs=122.1
Q ss_pred EEEEecCCCCCCCC---CCCCCCCChhHHHHHHHHHhhc--CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 59 ISLFADLHFGENAW---TDWGPLQDFNSVKVMSTVLDHE--TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 59 i~~isDlH~~~~~~---~~~~~~~~~~~~~~i~~~l~~~--~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
|.|+||+|++.... ..++. ...+.++.+.+.++.. +||+||++||+++..... .+...++.+.+...|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~-~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~------~~~~~l~~l~~l~~~ 73 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGP-EWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE------EAKLDLAWIDALPGT 73 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCc-cHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH------HHHHHHHHHHhCCCC
Confidence 46899999985321 11221 2245667777777665 999999999999655421 112344455556678
Q ss_pred EEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccce
Q 016360 134 WASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNY 213 (390)
Q Consensus 134 ~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny 213 (390)
+++|+||||.... + +.+ +...+........ .|.
T Consensus 74 v~~V~GNHD~~~~---------------------------------~--~~~-~~~~l~~~~~~~~-----------~n~ 106 (232)
T cd07393 74 KVLLKGNHDYWWG---------------------------------S--ASK-LRKALEESRLALL-----------FNN 106 (232)
T ss_pred eEEEeCCccccCC---------------------------------C--HHH-HHHHHHhcCeEEe-----------ccC
Confidence 9999999998420 0 111 1111111110000 011
Q ss_pred EEEEecCCCccCeEEEEEEEeC--CC------------CCCCCCCCHHHHHHHHHHHhhhCCCC-CCceEEEEccCchhh
Q 016360 214 VLQVSSSHDRQMAVAYMYFLDS--GG------------GSYPEVISSAQAEWFRHKAEEINPDS-RVPEIVFWHIPSKAY 278 (390)
Q Consensus 214 ~l~v~~~~~~~~~~~~l~~lDS--~~------------g~~~g~i~~~Ql~WL~~~L~~~~~~~-~~p~ivF~H~P~~~~ 278 (390)
.+.+ ..+.++.++. .. ....+.+.++|++||++.|++.+... ..+.|+++|+|+...
T Consensus 107 ~~~~--------~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~ 178 (232)
T cd07393 107 AYID--------DDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANE 178 (232)
T ss_pred cEEE--------CCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCC
Confidence 1111 1234444431 10 11234567889999999999875421 136899999998532
Q ss_pred hccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCc----ccCCCCeeEeecCCccCC
Q 016360 279 KKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDW----CCPYQNLWLCFARHTGYG 350 (390)
Q Consensus 279 ~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~----~~~~~gi~~~~~~~tG~~ 350 (390)
. .+. ..+.+++.+. +|.+++|||+|.... .+.++||.+..+++++++
T Consensus 179 ~---------------~~~---------~~~~~~~~~~-~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 179 N---------------GDD---------SPISKLIEEY-GVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred C---------------CCH---------HHHHHHHHHc-CCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 1 011 2467777775 899999999998752 335789998888888864
No 15
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.81 E-value=1e-17 Score=160.11 Aligned_cols=208 Identities=16% Similarity=0.215 Sum_probs=125.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhH--hCCCCE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTR--VRGIPW 134 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~--~~~iP~ 134 (390)
++|+||||+|++... ......+..+.+.++..+||+||+||||++.+... .++.+.+.|. ....|+
T Consensus 1 ~~i~~isD~H~~~~~------~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~------~~~~~~~~l~~~~~~~~~ 68 (301)
T COG1409 1 MRIAHISDLHLGALG------VDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPE------EYRRLKELLARLELPAPV 68 (301)
T ss_pred CeEEEEecCcccccc------cchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHH------HHHHHHHHHhhccCCCce
Confidence 589999999999410 12233455555566678899999999999985431 2234445555 778899
Q ss_pred EEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceE
Q 016360 135 ASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYV 214 (390)
Q Consensus 135 ~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~ 214 (390)
+++|||||..... ...+.... ...+. +.
T Consensus 69 ~~vpGNHD~~~~~------------------------------------~~~~~~~~-~~~~~---------------~~ 96 (301)
T COG1409 69 IVVPGNHDARVVN------------------------------------GEAFSDQF-FNRYA---------------VL 96 (301)
T ss_pred EeeCCCCcCCchH------------------------------------HHHhhhhh-cccCc---------------ce
Confidence 9999999998510 00011000 00000 01
Q ss_pred EEEecCCCccCeEEEEEEEeCCCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccC
Q 016360 215 LQVSSSHDRQMAVAYMYFLDSGGG-SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 293 (390)
Q Consensus 215 l~v~~~~~~~~~~~~l~~lDS~~g-~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g 293 (390)
..... .+.++++.+||... ...|.+++.|++||++.|+..+.......++++|||++....... . ..
T Consensus 97 ~~~~~-----~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~-----~--~~ 164 (301)
T COG1409 97 VGACS-----SGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVD-----R--VA 164 (301)
T ss_pred Eeecc-----CCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCCccc-----e--ee
Confidence 11110 13567888998753 344779999999999999987653111245555565553221110 0 00
Q ss_pred ccccccchhhhhhhHHHHHHHhCCC-ceEEEeCcCCCCC-cccCCCCeeEe-----ecCCccC
Q 016360 294 SINKESVAAQEAEMGIMKILVKRTS-VKAVFVGHNHGLD-WCCPYQNLWLC-----FARHTGY 349 (390)
Q Consensus 294 ~~n~e~v~~~~~~~~l~~~L~~~~~-V~~vf~GH~H~nd-~~~~~~gi~~~-----~~~~tG~ 349 (390)
..+ ...+..++...++ |+++++||.|... ....+.+..+. +++.+++
T Consensus 165 l~~---------~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (301)
T COG1409 165 LRD---------AGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS 218 (301)
T ss_pred eec---------chhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce
Confidence 001 1247777877766 9999999999972 35566666555 5555554
No 16
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.81 E-value=1.7e-18 Score=167.07 Aligned_cols=198 Identities=16% Similarity=0.228 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhhc--CCCEEEEeCccCCCCchhhh-hHHH--HHHHHHhhhHh--CCCCEEEEccCCCCCCCCCCCcccc
Q 016360 82 NSVKVMSTVLDHE--TPDFVIYLGDVITANNMAVA-NASL--YWDQAISPTRV--RGIPWASIFGNHDDAPFEWPLDWFS 154 (390)
Q Consensus 82 ~~~~~i~~~l~~~--~pD~Vv~tGDl~~~~~~~~~-~~~~--~~~~~~~~l~~--~~iP~~~v~GNHD~~~~~~~~~~~~ 154 (390)
.+++.+.+.+++. +|||||+|||++........ .... .+..+.+.+.+ .++|++.++||||.... +.+.
T Consensus 53 ~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~----~~~~ 128 (296)
T cd00842 53 RLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV----NQFP 128 (296)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc----cccC
Confidence 3444444444555 89999999999976653311 1111 13344444443 57999999999999742 1110
Q ss_pred CCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccc-eEEEEecCCCccCeEEEEEEE
Q 016360 155 DSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISN-YVLQVSSSHDRQMAVAYMYFL 233 (390)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~n-y~l~v~~~~~~~~~~~~l~~l 233 (390)
. . ... ....+.+....+. ...... .. ....+. |...+. ..+++++|
T Consensus 129 ~-----~--------~~~--------~~~~~~~~~~w~~-~l~~~~--~~--~~~~ggYY~~~~~-------~~l~vI~L 175 (296)
T cd00842 129 P-----N--------NSP--------SWLYDALAELWKS-WLPEEA--EE--TFKKGGYYSVPVK-------PGLRVISL 175 (296)
T ss_pred C-----c--------ccc--------cHHHHHHHHHHHh-hcCHHH--HH--HhhcceEEEEEcC-------CCeEEEEE
Confidence 0 0 000 0001111111100 000000 00 001133 333331 35899999
Q ss_pred eCCCCC----C----CCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhh
Q 016360 234 DSGGGS----Y----PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEA 305 (390)
Q Consensus 234 DS~~g~----~----~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~ 305 (390)
||.... + .......|++||+++|++.++.+ .+++|++|||+...... . + ...
T Consensus 176 nt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~-~~v~I~~HiPp~~~~~~-----------~--~------~~~ 235 (296)
T cd00842 176 NTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAG-EKVWIIGHIPPGVNSYD-----------T--L------ENW 235 (296)
T ss_pred eCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCC-CeEEEEeccCCCCcccc-----------c--c------hHH
Confidence 996421 1 22356899999999999986532 46899999999642110 0 0 111
Q ss_pred hhHHHHHHHhCCC-ceEEEeCcCCCCCcccCC
Q 016360 306 EMGIMKILVKRTS-VKAVFVGHNHGLDWCCPY 336 (390)
Q Consensus 306 ~~~l~~~L~~~~~-V~~vf~GH~H~nd~~~~~ 336 (390)
...|.+++.++++ |.++|+||+|..++...+
T Consensus 236 ~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~ 267 (296)
T cd00842 236 SERYLQIINRYSDTIAGQFFGHTHRDEFRVFY 267 (296)
T ss_pred HHHHHHHHHHHHHhhheeeecccccceEEEEe
Confidence 2468999988866 679999999998865544
No 17
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.78 E-value=7.5e-18 Score=157.69 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=114.1
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHh-CCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRV-RGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~-~~iP~~~ 136 (390)
||+++||+|+.... ......++.+.+.+++.+||+||++|||++.... .. ++++.+.+ .++|+++
T Consensus 1 ki~~iSDlH~~~~~------~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~----~~----~~~~~l~~~~~~pv~~ 66 (239)
T TIGR03729 1 KIAFSSDLHIDLNH------FDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQR----SL----PFIEKLQELKGIKVTF 66 (239)
T ss_pred CEEEEEeecCCCCC------CCHHHHHHHHHHHHHhcCCCEEEECCccccchhh----HH----HHHHHHHHhcCCcEEE
Confidence 69999999985321 0112235556666667789999999999986421 12 22333332 5689999
Q ss_pred EccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHH----hhhcccccccCCCCCCCCCCccc
Q 016360 137 IFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKK----EIDYNVLSHSKNGPKDLWPSISN 212 (390)
Q Consensus 137 v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~----~~~~~~~sf~~~gp~~~~~g~~n 212 (390)
++||||.... .. ..++.+. .+......+ ..++
T Consensus 67 v~GNHD~~~~---~~-------------------------------~~~~~~~~~~~~l~~~~~~~----------~~~~ 102 (239)
T TIGR03729 67 NAGNHDMLKD---LT-------------------------------YEEIESNDSPLYLHNRFIDI----------PNTQ 102 (239)
T ss_pred ECCCCCCCCC---CC-------------------------------HHHHHhccchhhhccccccc----------CCCc
Confidence 9999998520 00 0111000 000000000 0122
Q ss_pred eEEEEecC-------CCccC----eEEEEEEEeCCC--CCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhh
Q 016360 213 YVLQVSSS-------HDRQM----AVAYMYFLDSGG--GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYK 279 (390)
Q Consensus 213 y~l~v~~~-------~~~~~----~~~~l~~lDS~~--g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~ 279 (390)
+.|...+. +.... ....-+..|+.. +...+++.++|++||++.|++... .++|+++||||....
T Consensus 103 ~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~---~~~ivvtH~pP~~~~ 179 (239)
T TIGR03729 103 WRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDN---KQVIFVTHFVPHRDF 179 (239)
T ss_pred eEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCC---CCEEEEEcccchHHH
Confidence 33332210 00000 000011334421 122356889999999999988754 468999999985321
Q ss_pred ccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEee
Q 016360 280 KVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCF 343 (390)
Q Consensus 280 ~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~ 343 (390)
... +... ..|+... +.....++.+++.++ +|++++|||.|...-....+|+.++.
T Consensus 180 ~~~---~~~~---~~~~~~~--~~~~s~~l~~li~~~-~v~~~i~GH~H~~~~~~~i~~~~~~~ 234 (239)
T TIGR03729 180 IYV---PMDH---RRFDMFN--AFLGSQHFGQLLVKY-EIKDVIFGHLHRRFGPLTIGGTTYHN 234 (239)
T ss_pred hcC---CCCC---cchhhhh--hccChHHHHHHHHHh-CCCEEEECCccCCCCCEEECCEEEEe
Confidence 100 0000 0011000 000113688888776 99999999999964222347877654
No 18
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.77 E-value=3.1e-17 Score=154.88 Aligned_cols=188 Identities=16% Similarity=0.156 Sum_probs=105.5
Q ss_pred HHHHHHHhhcCCCEEEEeCccCCCCchhh-hhHHHHHHHHHhhhHhC--CCCEEEEccCCCCCCCCCCCccccCCCCCcc
Q 016360 85 KVMSTVLDHETPDFVIYLGDVITANNMAV-ANASLYWDQAISPTRVR--GIPWASIFGNHDDAPFEWPLDWFSDSGIPQL 161 (390)
Q Consensus 85 ~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~-~~~~~~~~~~~~~l~~~--~iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~ 161 (390)
+.+..+++..+||+||++|||++++.... ++..+.+.++.+.+... .+|+++||||||..... +.
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~---------~~--- 102 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGN---------GV--- 102 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCC---------CC---
Confidence 44455556679999999999999876422 11222344555555443 47999999999986310 00
Q ss_pred cCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceEEEEecCCCccCeEEEEEEEeCCC--CC
Q 016360 162 FCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQVSSSHDRQMAVAYMYFLDSGG--GS 239 (390)
Q Consensus 162 ~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~l~v~~~~~~~~~~~~l~~lDS~~--g~ 239 (390)
. ....+.++.. +|..+|.+.+ ..+++++|||-. +.
T Consensus 103 ----------------~--~~~~~rf~~~-----------------Fg~~~~~~~~--------~~~~fV~Lds~~l~~~ 139 (257)
T cd08163 103 ----------------V--LPVRQRFEKY-----------------FGPTSRVIDV--------GNHTFVILDTISLSNK 139 (257)
T ss_pred ----------------C--HHHHHHHHHH-----------------hCCCceEEEE--------CCEEEEEEccccccCC
Confidence 0 0011122211 2334555544 235788888863 22
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccC--C--CCCCCCCccCccccccchhhhhhhHHHHHHHh
Q 016360 240 YPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVA--P--RFGVHKPCVGSINKESVAAQEAEMGIMKILVK 315 (390)
Q Consensus 240 ~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~--~--~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~ 315 (390)
..+.+...|.+||++.++..+++ .|+|||+|||+....... + ......+...++..+.+..++.-..+++.|
T Consensus 140 ~~~~~~~~~~~~l~~~l~~~~~~--~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~-- 215 (257)
T cd08163 140 DDPDVYQPPREFLHSFSAMKVKS--KPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAV-- 215 (257)
T ss_pred cccccchhHHHHHHhhhhccCCC--CcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhh--
Confidence 33568899999999998876542 589999999996432110 0 000000000111112222222223455555
Q ss_pred CCCceEEEeCcCCCCCcccC
Q 016360 316 RTSVKAVFVGHNHGLDWCCP 335 (390)
Q Consensus 316 ~~~V~~vf~GH~H~nd~~~~ 335 (390)
+..+||+||+|. +|..
T Consensus 216 --~P~~vfsGhdH~--~C~~ 231 (257)
T cd08163 216 --QPVIAFSGDDHD--YCEV 231 (257)
T ss_pred --CCcEEEecCCCc--ccee
Confidence 446899999995 5754
No 19
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.74 E-value=1.9e-15 Score=148.66 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=150.3
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchh--hhhHHHHHHHHHhhhH-hCC
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMA--VANASLYWDQAISPTR-VRG 131 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~--~~~~~~~~~~~~~~l~-~~~ 131 (390)
+.++|+.+.|.=-|.. ......+.|.++.++.++||||.+||.+.++... +......+..+..... .+.
T Consensus 25 ~~l~F~~vGDwG~g~~--------~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~ 96 (394)
T PTZ00422 25 AQLRFASLGNWGTGSK--------QQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQ 96 (394)
T ss_pred CeEEEEEEecCCCCch--------hHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhC
Confidence 5689999999864321 2223346666776778999999999998544322 1222233444444422 268
Q ss_pred CCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccc-cCCCCCCCCCCc
Q 016360 132 IPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSH-SKNGPKDLWPSI 210 (390)
Q Consensus 132 iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf-~~~gp~~~~~g~ 210 (390)
+|||.|+||||..+. ..++....... | +++..+.++ .|+- +...|+...++
T Consensus 97 ~Pwy~vLGNHDy~Gn-~~AQi~r~~~~-----------y-------~~~~~~~~~--------~y~~~~~~~~RW~mP~- 148 (394)
T PTZ00422 97 IPFFTVLGQADWDGN-YNAELLKGQNV-----------Y-------LNGHGQTDI--------EYDSNNDIYPKWIMPN- 148 (394)
T ss_pred CCeEEeCCcccccCC-chhhhcccccc-----------c-------ccccccccc--------ccccccccCCCccCCc-
Confidence 999999999998752 01000000000 0 000000000 0000 00111111111
Q ss_pred cceEE----EEec-----CCCccCeEEEEEEEeCCC--CCCC-CCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhh
Q 016360 211 SNYVL----QVSS-----SHDRQMAVAYMYFLDSGG--GSYP-EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAY 278 (390)
Q Consensus 211 ~ny~l----~v~~-----~~~~~~~~~~l~~lDS~~--g~~~-g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~ 278 (390)
-.|.+ .+.. .-+.+...+.++|+||.. ..|+ ....+.|.+||+++|+..++. ....||+.|||+...
T Consensus 149 ~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~-a~WkIVvGHhPIySs 227 (394)
T PTZ00422 149 YWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKI-ADYIIVVGDKPIYSS 227 (394)
T ss_pred hhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccC-CCeEEEEecCceeec
Confidence 01111 1100 000112457899999963 2222 235789999999999754432 246999999999753
Q ss_pred hccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCC-----
Q 016360 279 KKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG----- 353 (390)
Q Consensus 279 ~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~----- 353 (390)
... |. +. +....+..+|+++ +|.+++|||+|..... ..+|+.++.+++.|....+
T Consensus 228 G~h-----------g~-~~------~L~~~L~PLL~ky-~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~~~~ 287 (394)
T PTZ00422 228 GSS-----------KG-DS------YLSYYLLPLLKDA-QVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSIMKN 287 (394)
T ss_pred CCC-----------CC-CH------HHHHHHHHHHHHc-CcCEEEEccccceEEe-cCCCceEEEeCccccccCCCCCCC
Confidence 210 11 10 1123577777665 8999999999987754 4578988877765532111
Q ss_pred ------CCCCeeEEEEEEcCCCeeeEEE-EcCCCcEEEEEee
Q 016360 354 ------NWPRGARILEIMEQPFSLKSWI-RMEDGSVHSEVIL 388 (390)
Q Consensus 354 ------~~~~G~Riiel~~~~~~~~tw~-r~~~g~~~~~~~~ 388 (390)
....|+-.++++.+ +++.-. ...+|+++.+.+.
T Consensus 288 ~~s~F~~~~~GF~~~~l~~~--~l~~~fid~~~GkvL~~~~~ 327 (394)
T PTZ00422 288 SKSLFYSEDIGFCIHELNAE--GMVTKFVSGNTGEVLYTHKQ 327 (394)
T ss_pred CCcceecCCCCEEEEEEecC--EEEEEEEeCCCCcEEEEeee
Confidence 12467888887755 344333 3467888777654
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.73 E-value=1.8e-16 Score=141.91 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=106.2
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
|+++||+|.... .++. ..+++.+||+||++||+++..... . ...+ +.+.+.++|+++|+
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~~~~~D~vv~~GDl~~~~~~~---~---~~~~-~~l~~~~~p~~~v~ 59 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILKAEEADAVIVAGDITNFGGKE---A---AVEI-NLLLAIGVPVLAVP 59 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhhccCCCEEEECCCccCcCCHH---H---HHHH-HHHHhcCCCEEEEc
Confidence 689999998531 1222 345667899999999999876532 1 1122 66677899999999
Q ss_pred cCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceEEEEe
Q 016360 139 GNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQVS 218 (390)
Q Consensus 139 GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~l~v~ 218 (390)
||||.... .. .+. ... . ...+..+.+
T Consensus 60 GNHD~~~~------------------------------------~~-~~~----~~~--~----------~~~~~~~~~- 85 (188)
T cd07392 60 GNCDTPEI------------------------------------LG-LLT----SAG--L----------NLHGKVVEV- 85 (188)
T ss_pred CCCCCHHH------------------------------------HH-hhh----cCc--E----------ecCCCEEEE-
Confidence 99998631 00 000 000 0 000111121
Q ss_pred cCCCccCeEEEEEEEeCCCC---CCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchh-hhccCCCCCCCCCccCc
Q 016360 219 SSHDRQMAVAYMYFLDSGGG---SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKA-YKKVAPRFGVHKPCVGS 294 (390)
Q Consensus 219 ~~~~~~~~~~~l~~lDS~~g---~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~-~~~~~~~~~~~~~~~g~ 294 (390)
..+.++.+++... ...+.++++|++|+ +.+...+ ..+.|+++|+||.. ..+.. ...
T Consensus 86 -------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~---~~~~ilv~H~pp~~~~~d~~--------~~~- 145 (188)
T cd07392 86 -------GGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNLL---AKNLILVTHAPPYGTAVDRV--------SGG- 145 (188)
T ss_pred -------CCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhccC---CCCeEEEECCCCcCCccccc--------CCC-
Confidence 1356777876421 11346889999999 4444332 24789999999964 22110 000
Q ss_pred cccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEe
Q 016360 295 INKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLC 342 (390)
Q Consensus 295 ~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~ 342 (390)
. ... ..++.+++.++ ++++++|||+|.........+.+++
T Consensus 146 ~---~~g----~~~l~~li~~~-~~~~~l~GH~H~~~~~~~~~~~~~~ 185 (188)
T cd07392 146 F---HVG----SKAIRKFIEER-QPLLCICGHIHESRGVDKIGNTLVV 185 (188)
T ss_pred C---ccC----CHHHHHHHHHh-CCcEEEEeccccccceeeeCCeEEe
Confidence 0 011 12577777665 7899999999996423344555443
No 21
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.67 E-value=2.5e-16 Score=135.69 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=55.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
|||+++||+|++.... .. ..+.+.......+||+||++||+++............ .........++|+++
T Consensus 1 ~ri~~isD~H~~~~~~-------~~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 70 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD-------SD-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQF--WFFIRLLNPKIPVYF 70 (200)
T ss_dssp EEEEEEEBBTTTHHHH-------CH-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHH--HHHHHHHHTTTTEEE
T ss_pred CeEEEEcCCCCCCcch-------hH-HHHHHHHHhccCCCCEEEeeccccccccccccchhhh--ccchhhhhccccccc
Confidence 7999999999986321 12 3445556666789999999999999887532211110 023455678999999
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
++||||...
T Consensus 71 ~~GNHD~~~ 79 (200)
T PF00149_consen 71 ILGNHDYYS 79 (200)
T ss_dssp EE-TTSSHH
T ss_pred cccccccce
Confidence 999999974
No 22
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.59 E-value=4.6e-14 Score=129.82 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=55.6
Q ss_pred EEEEEecCCCCCCCCCCCC---CCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 58 KISLFADLHFGENAWTDWG---PLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~---~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
||+|+||+|++........ ......+++.+.+.+++.+||+||++||+++....... ....+.+.++.+.+.++|+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPE-ALELLIEALRRLKEAGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHH-HHHHHHHHHHHHHHCCCCE
Confidence 6999999999975321100 00112334555555566799999999999997653211 1222334444444458999
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
++++||||...
T Consensus 80 ~~~~GNHD~~~ 90 (223)
T cd00840 80 FIIAGNHDSPS 90 (223)
T ss_pred EEecCCCCCcc
Confidence 99999999975
No 23
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.3e-13 Score=133.45 Aligned_cols=256 Identities=21% Similarity=0.287 Sum_probs=148.2
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
.+.+++++.|+=..... ..++.. ..+..++|+||+.|||........ .....|.++++++. ..+||
T Consensus 146 ~~~~~~i~GDlG~~~~~---------~s~~~~---~~~~~k~d~vlhiGDlsYa~~~~n-~~wD~f~r~vEp~A-s~vPy 211 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPY---------TSTLRN---QEENLKPDAVLHIGDLSYAMGYSN-WQWDEFGRQVEPIA-SYVPY 211 (452)
T ss_pred CceeEEEEccccccccc---------cchHhH---HhcccCCcEEEEecchhhcCCCCc-cchHHHHhhhhhhh-ccCce
Confidence 57899999998665421 112221 112237999999999997655332 12234557777766 47999
Q ss_pred EEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCCCCcccccccc-cchHHHHHHhhhcccccccCCCCCCCCCCccce
Q 016360 135 ASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRG-THRIELMKKEIDYNVLSHSKNGPKDLWPSISNY 213 (390)
Q Consensus 135 ~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~g-~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny 213 (390)
.++.|||+..... .+ | |.. ..| |...+-...-.+..-|
T Consensus 212 mv~~GNHE~d~~~--------~~-----~--------------F~~y~~R--------------f~mP~~~s~s~~~l~Y 250 (452)
T KOG1378|consen 212 MVCSGNHEIDWPP--------QP-----C--------------FVPYSAR--------------FNMPGNSSESDSNLYY 250 (452)
T ss_pred EEecccccccCCC--------cc-----c--------------cccccee--------------eccCCCcCCCCCceeE
Confidence 9999999997410 00 0 100 001 0110000000112335
Q ss_pred EEEEecCCCccCeEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccC
Q 016360 214 VLQVSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 293 (390)
Q Consensus 214 ~l~v~~~~~~~~~~~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g 293 (390)
.+.+ ..+++++|+|--. |.-....+|-+||+++|+..+..+...+||++|.|+.--.... . -..|
T Consensus 251 Sfd~--------G~vhfv~lsse~~-~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~-~-----~reG 315 (452)
T KOG1378|consen 251 SFDV--------GGVHFVVLSTETY-YNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDA-H-----YREG 315 (452)
T ss_pred EEee--------ccEEEEEEecccc-ccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCch-h-----hccC
Confidence 5543 3467777877431 1112467899999999999876434469999999996322100 0 0112
Q ss_pred ccccccchhhhhhhHHHHHHHhCCCceEEEeCcCCCCCcccCCC------------------CeeEeecCCccC-C----
Q 016360 294 SINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ------------------NLWLCFARHTGY-G---- 350 (390)
Q Consensus 294 ~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~------------------gi~~~~~~~tG~-~---- 350 (390)
.. +. ...+|-++|.+ .+|..+|.||.|.++-.++.. .|.+..| ..|. .
T Consensus 316 ~~--~~-----~~~~LE~l~~~-~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G-~~G~~e~~~~ 386 (452)
T KOG1378|consen 316 EF--ES-----MREGLEPLFVK-YKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVG-DGGNHEHLDP 386 (452)
T ss_pred cc--hh-----hHHHHHHHHHH-hceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEc-cCCcccccCc
Confidence 11 00 01246667766 499999999999976433221 1222222 2221 1
Q ss_pred ---------CCCCCCCeeEEEEEEcCCCeeeEEEEcCC--CcEEEEEeeC
Q 016360 351 ---------GYGNWPRGARILEIMEQPFSLKSWIRMED--GSVHSEVILS 389 (390)
Q Consensus 351 ---------~y~~~~~G~Riiel~~~~~~~~tw~r~~~--g~~~~~~~~~ 389 (390)
.+....-|+-+++++......-+|+|..| |.+.+.+.|.
T Consensus 387 ~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~ 436 (452)
T KOG1378|consen 387 FSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLI 436 (452)
T ss_pred ccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEE
Confidence 12234679999999987788899999944 6788877664
No 24
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.58 E-value=8.9e-15 Score=129.09 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=44.9
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
|+++||+|++.... .. .+.+.+...++|+|+++||+++..... ... . .........|+++|+
T Consensus 1 ~~~iSDlH~~~~~~------~~-----~~~~~~~~~~~d~li~~GDi~~~~~~~-----~~~-~-~~~~~~~~~~v~~v~ 62 (166)
T cd07404 1 IQYLSDLHLEFEDN------LA-----DLLNFPIAPDADILVLAGDIGYLTDAP-----RFA-P-LLLALKGFEPVIYVP 62 (166)
T ss_pred CceEccccccCccc------cc-----cccccCCCCCCCEEEECCCCCCCcchH-----HHH-H-HHHhhcCCccEEEeC
Confidence 57899999976321 00 111334557899999999999876531 111 1 122344678999999
Q ss_pred cCCCCC
Q 016360 139 GNHDDA 144 (390)
Q Consensus 139 GNHD~~ 144 (390)
||||..
T Consensus 63 GNHD~~ 68 (166)
T cd07404 63 GNHEFY 68 (166)
T ss_pred CCcceE
Confidence 999986
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.53 E-value=9.1e-14 Score=119.51 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
|+|+||+|++....... ......++.+.+.+++.+||+|+++||+++..... ....+.++++.+....+|+++++
T Consensus 1 il~isD~Hl~~~~~~~~--~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~---~~~~~~~~~~~l~~~~~~~~~v~ 75 (144)
T cd07400 1 ILHLSDLHFGPERKPEL--LALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPE---EFEEAREFLDALPAPLEPVLVVP 75 (144)
T ss_pred CeEeCccCCCCCcchhH--HHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHH---HHHHHHHHHHHccccCCcEEEeC
Confidence 68999999987532100 00111133455666678999999999999987631 11223344554444346999999
Q ss_pred cCCC
Q 016360 139 GNHD 142 (390)
Q Consensus 139 GNHD 142 (390)
||||
T Consensus 76 GNHD 79 (144)
T cd07400 76 GNHD 79 (144)
T ss_pred CCCe
Confidence 9993
No 26
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.53 E-value=2.5e-12 Score=128.38 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=56.7
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCC---hhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhH---
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQD---FNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTR--- 128 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~---~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~--- 128 (390)
+++||+|+||+|+|.... .+... .++++.+.+.+.++++|+||++|||+|....... + +.++++.|+
T Consensus 2 ~~mKIlh~SD~HlG~~~~---~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~-~---~~~~~~~lr~~~ 74 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGEN---DPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRK-S---LYQVLRSLRLYC 74 (405)
T ss_pred CceEEEEEcCCCCCCccC---CchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHH-H---HHHHHHHHHHhh
Confidence 469999999999996421 11122 2344555555667899999999999998765322 1 112222222
Q ss_pred ---------------------------------hCCCCEEEEccCCCCCC
Q 016360 129 ---------------------------------VRGIPWASIFGNHDDAP 145 (390)
Q Consensus 129 ---------------------------------~~~iP~~~v~GNHD~~~ 145 (390)
+.++|+++|.||||...
T Consensus 75 ~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 75 LGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 24799999999999975
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.51 E-value=2.1e-12 Score=119.25 Aligned_cols=72 Identities=7% Similarity=0.082 Sum_probs=54.6
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
..||+.+||+|-. ...++.+.+.+++.++|+||++||+++.+... +.+..+++.+.+++.|++
T Consensus 4 ~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~-----~~~~~~l~~l~~l~~pv~ 66 (224)
T cd07388 4 VRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAAKS-----EDYAAFFRILGEAHLPTF 66 (224)
T ss_pred eeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCH-----HHHHHHHHHHHhcCCceE
Confidence 4789999999952 22455566666667999999999999976321 123366777777889999
Q ss_pred EEccCCCCC
Q 016360 136 SIFGNHDDA 144 (390)
Q Consensus 136 ~v~GNHD~~ 144 (390)
+|+||||..
T Consensus 67 ~V~GNhD~~ 75 (224)
T cd07388 67 YVPGPQDAP 75 (224)
T ss_pred EEcCCCChH
Confidence 999999975
No 28
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.47 E-value=1.8e-12 Score=123.62 Aligned_cols=78 Identities=26% Similarity=0.390 Sum_probs=54.0
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
+.+||+++||+|++.. .....++.+.+.+++.+||+|+++||+++...... . ..+.++++.+.. ..|+
T Consensus 48 ~~~rI~~lSDlH~~~~--------~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~--~-~~~~~~L~~L~~-~~pv 115 (271)
T PRK11340 48 APFKILFLADLHYSRF--------VPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLN--F-SAFSDVLSPLAE-CAPT 115 (271)
T ss_pred CCcEEEEEcccCCCCc--------CCHHHHHHHHHHHHhcCCCEEEEccCcCCCCcccc--H-HHHHHHHHHHhh-cCCE
Confidence 3599999999999753 12234455566677889999999999998432111 1 123345555544 4799
Q ss_pred EEEccCCCCC
Q 016360 135 ASIFGNHDDA 144 (390)
Q Consensus 135 ~~v~GNHD~~ 144 (390)
|+|+||||..
T Consensus 116 ~~V~GNHD~~ 125 (271)
T PRK11340 116 FACFGNHDRP 125 (271)
T ss_pred EEecCCCCcc
Confidence 9999999986
No 29
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.2e-12 Score=118.58 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEE
Q 016360 244 ISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVF 323 (390)
Q Consensus 244 i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf 323 (390)
+-..++.||+..|++..+ ...||.-|||+...... |. ..+-+..++-+|++ .+|.+.+
T Consensus 191 ~~~~~l~~le~~L~~S~a---~wkiVvGHh~i~S~~~H-----------G~-------T~eL~~~LlPiL~~-n~VdlY~ 248 (336)
T KOG2679|consen 191 YLRALLSWLEVALKASRA---KWKIVVGHHPIKSAGHH-----------GP-------TKELEKQLLPILEA-NGVDLYI 248 (336)
T ss_pred HHHHHHHHHHHHHHHhhc---ceEEEecccceehhhcc-----------CC-------hHHHHHHHHHHHHh-cCCcEEE
Confidence 567899999999999876 35899999999754321 21 01123457777766 5999999
Q ss_pred eCcCCCCCcccC-CCCeeEeecCCcc
Q 016360 324 VGHNHGLDWCCP-YQNLWLCFARHTG 348 (390)
Q Consensus 324 ~GH~H~nd~~~~-~~gi~~~~~~~tG 348 (390)
|||+|....... -.+|.+...+...
T Consensus 249 nGHDHcLQhis~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 249 NGHDHCLQHISSPESGIQFVTSGAGS 274 (336)
T ss_pred ecchhhhhhccCCCCCeeEEeeCCcc
Confidence 999998764443 5788877765443
No 30
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.40 E-value=7.2e-12 Score=115.49 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=54.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
+||+++||+|++... ..+.++.+.+.+++.+||+|+++||+++...... ..+.++++.+. ..+|+++
T Consensus 2 ~~i~~~sDlH~~~~~--------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~----~~~~~~l~~l~-~~~~v~~ 68 (223)
T cd07385 2 LRIAHLSDLHLGPFV--------SRERLERLVEKINALKPDLVVLTGDLVDGSVDVL----ELLLELLKKLK-APLGVYA 68 (223)
T ss_pred CEEEEEeecCCCccC--------CHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh----HHHHHHHhccC-CCCCEEE
Confidence 799999999998631 2234556666677789999999999999876421 11223444332 4689999
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
++||||...
T Consensus 69 v~GNHD~~~ 77 (223)
T cd07385 69 VLGNHDYYS 77 (223)
T ss_pred ECCCccccc
Confidence 999999874
No 31
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.38 E-value=5.8e-12 Score=110.26 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=52.9
Q ss_pred EEEecCCCCCCCCCCCCC--CCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhh-HHHHHHHHHhhhHh-CCCCEE
Q 016360 60 SLFADLHFGENAWTDWGP--LQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVAN-ASLYWDQAISPTRV-RGIPWA 135 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~-~~~~~~~~~~~l~~-~~iP~~ 135 (390)
+++||+|++......+-+ ..+....+.+.+++++.+||+||++||+++........ ....+.++.+.+.. .++|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 468999996432110000 02223445777888889999999999999876532111 11222333333332 368999
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+|+||||...
T Consensus 81 ~v~GNHD~~~ 90 (156)
T cd08165 81 VVVGNHDIGF 90 (156)
T ss_pred EEcCCCCcCC
Confidence 9999999863
No 32
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.38 E-value=1.2e-12 Score=113.36 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=40.8
Q ss_pred HHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCCCCCCeeEEEEEEc
Q 016360 309 IMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIME 366 (390)
Q Consensus 309 l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~~~~~G~Riiel~~ 366 (390)
+.+.+. ..+++++++||.|... ....+|+.+++.++.+....+. +++|-++++.+
T Consensus 101 ~~~~~~-~~~~~~~~~GH~H~~~-~~~~~~~~~~~~Gs~~~~~~~~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 101 LREILS-RENVDLVLHGHTHRPQ-VFKIGGIHVINPGSIGGPRHGD-QSGYAILDIED 155 (156)
T ss_dssp HHHHHH-HTTSSEEEESSSSSEE-EEEETTEEEEEE-GSSS-SSSS-SEEEEEEEETT
T ss_pred hhhhhc-ccCCCEEEcCCcccce-EEEECCEEEEECCcCCCCCCCC-CCEEEEEEEec
Confidence 445555 4699999999999966 4456899999888877555445 89999999864
No 33
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.32 E-value=3.6e-10 Score=113.62 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=60.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC---ChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 57 FKISLFADLHFGENAWTDWGPLQ---DFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~---~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
+||+|+||+|+|.... +... ....++.+.+.+++++||+||++||++|..... ......+.+++..|.+.++|
T Consensus 1 mkilh~SDlHlG~~~~---~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~-~~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFY---SKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPP-SYARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCccc---CcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCc-HHHHHHHHHHHHHHHhcCCc
Confidence 6899999999986421 1111 112345666667789999999999999976532 22223345666777778899
Q ss_pred EEEEccCCCCCC
Q 016360 134 WASIFGNHDDAP 145 (390)
Q Consensus 134 ~~~v~GNHD~~~ 145 (390)
+++|+||||...
T Consensus 77 v~~I~GNHD~~~ 88 (407)
T PRK10966 77 LVVLAGNHDSVA 88 (407)
T ss_pred EEEEcCCCCChh
Confidence 999999999864
No 34
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.28 E-value=9.3e-11 Score=109.93 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=51.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh--hcCCCEEEEeCccCCCCchhh--hhHHHHHHHHHhhhHhCCC
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD--HETPDFVIYLGDVITANNMAV--ANASLYWDQAISPTRVRGI 132 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~--~~~pD~Vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~~~~i 132 (390)
+|++++||+|++... ....+.+.+.++ +.+||+|+++||+++...... ......+.++++.+.+.++
T Consensus 1 M~i~~iSDlHl~~~~---------~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~ 71 (241)
T PRK05340 1 MPTLFISDLHLSPER---------PAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGV 71 (241)
T ss_pred CcEEEEeecCCCCCC---------hhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCC
Confidence 589999999998632 112233333332 368999999999998422110 0111223356667777789
Q ss_pred CEEEEccCCCCC
Q 016360 133 PWASIFGNHDDA 144 (390)
Q Consensus 133 P~~~v~GNHD~~ 144 (390)
|+++++||||..
T Consensus 72 ~v~~v~GNHD~~ 83 (241)
T PRK05340 72 PCYFMHGNRDFL 83 (241)
T ss_pred eEEEEeCCCchh
Confidence 999999999975
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.25 E-value=4e-10 Score=104.55 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=46.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
+||+++||+|.... . ...+.+++.+||+||++||+++... ++++.+.++..|+++
T Consensus 1 ~rIa~isDiHg~~~----------~----~~~~~l~~~~pD~Vl~~GDi~~~~~-----------~~~~~l~~l~~p~~~ 55 (238)
T cd07397 1 LRIAIVGDVHGQWD----------L----EDIKALHLLQPDLVLFVGDFGNESV-----------QLVRAISSLPLPKAV 55 (238)
T ss_pred CEEEEEecCCCCch----------H----HHHHHHhccCCCEEEECCCCCcChH-----------HHHHHHHhCCCCeEE
Confidence 58999999996431 1 1123456678999999999986421 344555667789999
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
|+||||...
T Consensus 56 V~GNHD~~~ 64 (238)
T cd07397 56 ILGNHDAWY 64 (238)
T ss_pred EcCCCcccc
Confidence 999999864
No 36
>PRK09453 phosphodiesterase; Provisional
Probab=99.24 E-value=4e-10 Score=101.05 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=52.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
+||+++||+|... ..++.+.+.+++.+||.|+++||+++.+............++.+.+.+.+.|+++
T Consensus 1 mri~viSD~Hg~~------------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 68 (182)
T PRK09453 1 MKLMFASDTHGSL------------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIA 68 (182)
T ss_pred CeEEEEEeccCCH------------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEE
Confidence 5899999999531 1345566666778999999999999854321000000112455666677789999
Q ss_pred EccCCCCC
Q 016360 137 IFGNHDDA 144 (390)
Q Consensus 137 v~GNHD~~ 144 (390)
|+||||..
T Consensus 69 V~GNhD~~ 76 (182)
T PRK09453 69 VRGNCDSE 76 (182)
T ss_pred EccCCcch
Confidence 99999975
No 37
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.23 E-value=1.8e-10 Score=100.87 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=45.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE-TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+||+++||+|.... .++.+.+.++.. ++|.|+++||++.. ++++.+.+.+.|++
T Consensus 1 m~i~viSD~H~~~~------------~~~~~~~~~~~~~~~d~ii~~GD~~~~-------------~~~~~l~~~~~~~~ 55 (158)
T TIGR00040 1 MKILVISDTHGPLR------------ATELPVELFNLESNVDLVIHAGDLTSP-------------FVLKEFEDLAAKVI 55 (158)
T ss_pred CEEEEEecccCCcc------------hhHhHHHHHhhccCCCEEEEcCCCCCH-------------HHHHHHHHhCCceE
Confidence 58999999996431 233444555665 89999999999821 23333445677999
Q ss_pred EEccCCCCC
Q 016360 136 SIFGNHDDA 144 (390)
Q Consensus 136 ~v~GNHD~~ 144 (390)
+|+||||..
T Consensus 56 ~V~GN~D~~ 64 (158)
T TIGR00040 56 AVRGNNDGE 64 (158)
T ss_pred EEccCCCch
Confidence 999999985
No 38
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.23 E-value=2e-10 Score=103.37 Aligned_cols=86 Identities=23% Similarity=0.233 Sum_probs=54.6
Q ss_pred EEEecCCCCCCCCCCC--CC----CCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhh-hHHHHHHHHHhhh-HhCC
Q 016360 60 SLFADLHFGENAWTDW--GP----LQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVA-NASLYWDQAISPT-RVRG 131 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~--~~----~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~-~~~~~~~~~~~~l-~~~~ 131 (390)
+.+||+|+-......+ +. ..+....+....+++..+||+||++|||+|.+..... +..+.++++.+.+ ...+
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~ 80 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNG 80 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3689999964321110 00 0123344666677777899999999999998875422 2223344444433 2457
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
+|+++|+||||...
T Consensus 81 ~~~~~VpGNHDIG~ 94 (195)
T cd08166 81 TKIIYLPGDNDIGG 94 (195)
T ss_pred CcEEEECCCCCcCC
Confidence 89999999999874
No 39
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.21 E-value=4.8e-10 Score=101.34 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=51.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhH--------------------
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANA-------------------- 116 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~-------------------- 116 (390)
-||+-+||+|-. .+.++.+..++.+.+||+||++||+........+..
T Consensus 6 ~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~ 73 (255)
T PF14582_consen 6 RKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECY 73 (255)
T ss_dssp -EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHH
T ss_pred hhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhh
Confidence 479999999763 346777888888889999999999988765432221
Q ss_pred -HHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 117 -SLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 117 -~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.+.++.++..|..+++|+++||||||-+.
T Consensus 74 ~~e~~~~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 74 DSEALDKFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEE--TTS-SH
T ss_pred hHHHHHHHHHHHHhcCCcEEEecCCCCchH
Confidence 12366888999999999999999999863
No 40
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.20 E-value=1.8e-09 Score=109.77 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=121.1
Q ss_pred CCCEEEEeCccCCCCchhh--hhHHHHHHHHHhhhHh--CCCCEEEEccCCCCCCCCCCCccccCCCCCcccCCCCCCCC
Q 016360 95 TPDFVIYLGDVITANNMAV--ANASLYWDQAISPTRV--RGIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSY 170 (390)
Q Consensus 95 ~pD~Vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~~--~~iP~~~v~GNHD~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 170 (390)
++|+|+.|||.+.-..... +.....+..+.+.|.+ .++|+|...||||... .+-+....++..+ .+
T Consensus 210 ~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P----~N~F~~~~~~~~~----~~-- 279 (577)
T KOG3770|consen 210 DIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHP----VNLFAPGSVPKRH----SQ-- 279 (577)
T ss_pred CCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCc----HhhcCCCCCcchh----hh--
Confidence 4999999999996443332 1122233344444433 3799999999999874 2222222111100 00
Q ss_pred CCcccccccccchHHHHHHhhhcccccccCCCCCCCCCCccceEEEEecCCCccCeEEEEEEEeCCCCCC-C------CC
Q 016360 171 SGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQVSSSHDRQMAVAYMYFLDSGGGSY-P------EV 243 (390)
Q Consensus 171 ~~~~~~~f~g~~r~~~~~~~~~~~~~sf~~~gp~~~~~g~~ny~l~v~~~~~~~~~~~~l~~lDS~~g~~-~------g~ 243 (390)
.| --+.|...- ...++.+. ++. .-.+.|+.... .++++++.||+.-... . .-
T Consensus 280 ------~w----ly~~~~~~W-~~wlp~e~---~~t-~~kga~Y~~~~------~~Glr~IslNt~~c~~~N~~L~~n~t 338 (577)
T KOG3770|consen 280 ------LW----LYKHLAGAW-STWLPAEA---KET-FLKGAYYLVLV------IDGLRLISLNTNYCSAPNFWLYANQT 338 (577)
T ss_pred ------hH----HHHHHHhhh-hccCCHHH---Hhh-hhcCcEEEEee------cCCceEEEeccccccccceeeeecCC
Confidence 00 001111100 00111110 011 12234444432 2457888888863221 1 11
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCC-CceEE
Q 016360 244 ISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRT-SVKAV 322 (390)
Q Consensus 244 i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~-~V~~v 322 (390)
-..+|++||..+|.+++..+ ..+=|..|+|+... .|.-.|. ..+.+++.++. -|.+.
T Consensus 339 dp~~~lqWf~~~L~~ae~~G-ekVhil~HIPpG~~-----------~c~~~ws----------~~f~~iv~r~~~tI~gq 396 (577)
T KOG3770|consen 339 DPIDQLQWFVDQLQEAESAG-EKVHILGHIPPGDG-----------VCLEGWS----------INFYRIVNRFRSTIAGQ 396 (577)
T ss_pred CchHHhhHHHHHHHHHHhcC-CEEEEEEeeCCCCc-----------chhhhhh----------HHHHHHHHHHHHhhhhh
Confidence 34578999999999987643 45899999999641 1111221 13566665543 35589
Q ss_pred EeCcCCCCCcccCCC---CeeEeecC-CccCCCCCCCCCeeEEEEEEcCC----CeeeEEEEc
Q 016360 323 FVGHNHGLDWCCPYQ---NLWLCFAR-HTGYGGYGNWPRGARILEIMEQP----FSLKSWIRM 377 (390)
Q Consensus 323 f~GH~H~nd~~~~~~---gi~~~~~~-~tG~~~y~~~~~G~Riiel~~~~----~~~~tw~r~ 377 (390)
|.||.|.+.+...+. |-++..+- ..+...|-+.-+|||+.+++... -+.+||++-
T Consensus 397 f~GH~h~d~f~v~yde~~~~p~~v~~i~~svtty~~~~p~yr~y~~~~~~~~~~~d~~ty~~N 459 (577)
T KOG3770|consen 397 FYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTTYYNKNPGYRIYAVDSTISFSVPDHRTYFYN 459 (577)
T ss_pred ccccCcceeEEEEeccccCCceeeeeccccceehhccCCCceecccCcccceecccceEEEEe
Confidence 999999987654332 11221111 11223445567899999998432 456778653
No 41
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.7e-11 Score=112.73 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC-CCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG-IPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~-iP~~ 135 (390)
+||+|+||+|++...............++.+...+.+++||+||++||++|...... .....+.++++.+.+.+ +|++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~-~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPA-EAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH-HHHHHHHHHHHHHHhcCCceEE
Confidence 689999999998743110000001234556666666789999999999999875432 22334556777777776 9999
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+++||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999864
No 42
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.18 E-value=5e-11 Score=117.28 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=58.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHH-HHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQ-AISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~-~~~~l~~~~iP~~ 135 (390)
+||+|+||+|+|......+........++.+.+.+.+++||+||++||++|...........+..+ +++.+.+.++|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 689999999999643211100001234455555566789999999999999864332222223333 4566677899999
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+++||||...
T Consensus 81 ~I~GNHD~~~ 90 (340)
T PHA02546 81 VLVGNHDMYY 90 (340)
T ss_pred EEccCCCccc
Confidence 9999999853
No 43
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.14 E-value=1.2e-09 Score=92.94 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC-EEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP-WAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP-~~~ 136 (390)
||+++||+|.... .++..+||+||++||+++..... .+..+.+.+.+.+.| +++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 55 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTLE------ELQKFLDWLKSLPHPHKIV 55 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCHH------HHHHHHHHHHhCCCCeEEE
Confidence 5899999997531 12446899999999999876431 123445555666666 578
Q ss_pred EccCCCCC
Q 016360 137 IFGNHDDA 144 (390)
Q Consensus 137 v~GNHD~~ 144 (390)
|+||||..
T Consensus 56 v~GNHD~~ 63 (135)
T cd07379 56 IAGNHDLT 63 (135)
T ss_pred EECCCCCc
Confidence 99999974
No 44
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.14 E-value=8.5e-11 Score=117.87 Aligned_cols=85 Identities=28% Similarity=0.394 Sum_probs=60.4
Q ss_pred eEEEEEecCCCCC-CCCCCCCCCC---ChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCC
Q 016360 57 FKISLFADLHFGE-NAWTDWGPLQ---DFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGI 132 (390)
Q Consensus 57 ~ki~~isDlH~~~-~~~~~~~~~~---~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 132 (390)
+||+|.||+|+|. ... .+.. ..+++..+...+.+.++|+||++||++|....+. ++...+.++++.+...+|
T Consensus 1 mkilHtSD~HLG~~~~~---~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~-~a~~~~~~~l~~l~~~~I 76 (390)
T COG0420 1 MKILHTSDWHLGSKQLN---LPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSP-RALKLFLEALRRLKDAGI 76 (390)
T ss_pred CeeEEecccccchhhcc---CccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCH-HHHHHHHHHHHHhccCCC
Confidence 5899999999993 211 1111 1234445555556789999999999999866442 333444566677777789
Q ss_pred CEEEEccCCCCCC
Q 016360 133 PWASIFGNHDDAP 145 (390)
Q Consensus 133 P~~~v~GNHD~~~ 145 (390)
|+|+++||||...
T Consensus 77 pv~~I~GNHD~~~ 89 (390)
T COG0420 77 PVVVIAGNHDSPS 89 (390)
T ss_pred cEEEecCCCCchh
Confidence 9999999999975
No 45
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.08 E-value=2.4e-08 Score=90.58 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=53.6
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccC--CCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVI--TANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~--~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
++|++.+||+|-... .++.+..+....++|++|++|||+ +-+... ...+.. .++.+.+.++|
T Consensus 3 ~mkil~vtDlHg~~~------------~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~--~~~~~~--~~e~l~~~~~~ 66 (226)
T COG2129 3 KMKILAVTDLHGSED------------SLKKLLNAAADIRADLLVIAGDLTYFHFGPKE--VAEELN--KLEALKELGIP 66 (226)
T ss_pred cceEEEEeccccchH------------HHHHHHHHHhhccCCEEEEecceehhhcCchH--HHHhhh--HHHHHHhcCCe
Confidence 589999999998642 445666666677999999999999 655432 111110 15677889999
Q ss_pred EEEEccCCCCC
Q 016360 134 WASIFGNHDDA 144 (390)
Q Consensus 134 ~~~v~GNHD~~ 144 (390)
++++|||=|-.
T Consensus 67 v~avpGNcD~~ 77 (226)
T COG2129 67 VLAVPGNCDPP 77 (226)
T ss_pred EEEEcCCCChH
Confidence 99999996665
No 46
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.07 E-value=1.7e-08 Score=90.31 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=44.7
Q ss_pred hCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCC--CC-CCCCCeeEEEEEEcCCCeeeEEEEcCCCcEEE
Q 016360 315 KRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG--GY-GNWPRGARILEIMEQPFSLKSWIRMEDGSVHS 384 (390)
Q Consensus 315 ~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~--~y-~~~~~G~Riiel~~~~~~~~tw~r~~~g~~~~ 384 (390)
+..++..+++||+|... ....+|+.++-.++.|.. +- +.....|-+++++++. .-..++++.++++--
T Consensus 103 ~~~~~dvii~GHTH~p~-~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~-~~~~~~~l~~~~~~~ 173 (178)
T cd07394 103 RQLDVDILISGHTHKFE-AFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSK-VVTYVYQLIDGEVKV 173 (178)
T ss_pred HhcCCCEEEECCCCcce-EEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCe-EEEEEEEEECCcEEE
Confidence 34577899999999865 456688888877777631 11 1223467777776542 334778887776543
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.07 E-value=6.4e-09 Score=90.46 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=36.1
Q ss_pred CCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCCCCCCeeEEEEEEc
Q 016360 317 TSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIME 366 (390)
Q Consensus 317 ~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~~~~~G~Riiel~~ 366 (390)
.++..+++||+|... ....+|+.++..++.|. .....+++|-++++.+
T Consensus 101 ~~~d~vi~GHtH~~~-~~~~~~~~~inpGs~~~-~~~~~~~~~~i~~~~~ 148 (155)
T cd00841 101 GGADVVLYGHTHIPV-IEKIGGVLLLNPGSLSL-PRGGGPPTYAILEIDD 148 (155)
T ss_pred cCCCEEEECcccCCc-cEEECCEEEEeCCCccC-cCCCCCCeEEEEEecC
Confidence 467899999999976 45568888888777773 2224467899999876
No 48
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.94 E-value=8.9e-09 Score=87.19 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCceEEEeCcCCCCCc
Q 016360 308 GIMKILVKRTSVKAVFVGHNHGLDW 332 (390)
Q Consensus 308 ~l~~~L~~~~~V~~vf~GH~H~nd~ 332 (390)
.+.+++.+. +++.++|||.|.+..
T Consensus 82 ~l~~~l~~~-~~~~vl~GH~H~~~~ 105 (129)
T cd07403 82 AFLDFIDRF-RPKLFIHGHTHLNYG 105 (129)
T ss_pred HHHHHHHHH-CCcEEEEcCcCCCcC
Confidence 466777665 688999999998763
No 49
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.92 E-value=2.3e-09 Score=95.34 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=55.9
Q ss_pred EEEecCCCCCCCC----CCCCCCC-ChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 60 SLFADLHFGENAW----TDWGPLQ-DFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 60 ~~isDlH~~~~~~----~~~~~~~-~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
+++||+|+|.... ...-|.. ..++++.+.+.+++.+||.||++||++++............ . ...+...++|+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~-~-~~~~~~~~~~v 78 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEV-A-FLRLLAKDVDV 78 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHH-H-HHHhccCCCeE
Confidence 4799999997431 1111222 23567888888888999999999999986553322111111 1 23335578999
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
++|+||||...
T Consensus 79 ~~i~GNHD~~~ 89 (172)
T cd07391 79 ILIRGNHDGGL 89 (172)
T ss_pred EEEcccCccch
Confidence 99999999874
No 50
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=5.6e-09 Score=95.56 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=48.6
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcC--CCEEEEeCccCCCCchhh--hhHHHHHHHHHhhhHhCCCCEE
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHET--PDFVIYLGDVITANNMAV--ANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--pD~Vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+.|||+|+++.. | . ..+.+.+.++... .|.+.+.||+++...... .+......+-+..+.+.+.|+|
T Consensus 1 lFISDlHL~~~~-----p---~-~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~ 71 (237)
T COG2908 1 LFISDLHLGPKR-----P---A-LTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVY 71 (237)
T ss_pred CeeeccccCCCC-----c---H-HHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEE
Confidence 369999999542 1 1 2234455555544 499999999998654322 1111112233344566799999
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+++||||...
T Consensus 72 ~i~GN~Dfll 81 (237)
T COG2908 72 YIHGNHDFLL 81 (237)
T ss_pred EecCchHHHH
Confidence 9999999653
No 51
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.87 E-value=5e-09 Score=93.12 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=55.5
Q ss_pred EEEecCCCCCCCCCCC-C-------C-CCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhh-hHHHHHHHHHhhhHh
Q 016360 60 SLFADLHFGENAWTDW-G-------P-LQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVA-NASLYWDQAISPTRV 129 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~-~-------~-~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~-~~~~~~~~~~~~l~~ 129 (390)
+.+||+|++....-.. + | ..+....+.+.++++..+||+||++||++|+...... ...+.+..+.+.+..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 3689999987532111 1 0 1233456777888888999999999999998764321 112223333333321
Q ss_pred -----CCCCEEEEccCCCCCC
Q 016360 130 -----RGIPWASIFGNHDDAP 145 (390)
Q Consensus 130 -----~~iP~~~v~GNHD~~~ 145 (390)
.++|+++|+||||...
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred cccccCCceEEEECCccccCC
Confidence 2789999999999974
No 52
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.76 E-value=2.4e-08 Score=93.05 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=48.1
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh--cCCCEEEEeCccCCCCchh--hhhHHHHHHHHHhhhHhCCCCEE
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH--ETPDFVIYLGDVITANNMA--VANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~pD~Vv~tGDl~~~~~~~--~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+++||+|++... ....+.+.+.+++ .+||+|+++||+++..... .......+.++++.+.+.++|++
T Consensus 2 ~~iSDlHl~~~~---------~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~ 72 (231)
T TIGR01854 2 LFISDLHLSPER---------PDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCY 72 (231)
T ss_pred eEEEecCCCCCC---------hhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEE
Confidence 689999998631 1112222232322 3899999999999853210 01111223455666777789999
Q ss_pred EEccCCCCC
Q 016360 136 SIFGNHDDA 144 (390)
Q Consensus 136 ~v~GNHD~~ 144 (390)
+|+||||..
T Consensus 73 ~v~GNHD~~ 81 (231)
T TIGR01854 73 FMHGNRDFL 81 (231)
T ss_pred EEcCCCchh
Confidence 999999986
No 53
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.76 E-value=1.1e-06 Score=84.07 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=49.2
Q ss_pred eEEEEEecCCCCCCCCCCCC----CCCChhHHHHHHHHHhhcCCCEEEE-eCccCCCCchhhhh---HHHHHHHHHhhhH
Q 016360 57 FKISLFADLHFGENAWTDWG----PLQDFNSVKVMSTVLDHETPDFVIY-LGDVITANNMAVAN---ASLYWDQAISPTR 128 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~pD~Vv~-tGDl~~~~~~~~~~---~~~~~~~~~~~l~ 128 (390)
++|++++|+|-...++.... .......+..+.+.+++++||.+++ +||++++....... ....-..+++.|.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 58999999995433221100 0112233334444444567898887 99999986521100 0000124566667
Q ss_pred hCCCCEEEEccCCCCC
Q 016360 129 VRGIPWASIFGNHDDA 144 (390)
Q Consensus 129 ~~~iP~~~v~GNHD~~ 144 (390)
..+.. ++++||||+.
T Consensus 81 ~~g~d-~~~lGNHe~d 95 (277)
T cd07410 81 ALGYD-AGTLGNHEFN 95 (277)
T ss_pred hcCCC-EEeecccCcc
Confidence 77766 5567999986
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.76 E-value=6.8e-07 Score=84.62 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
++|++++|+| ...... .+.......++.+.+.+++++|| +++.+||++++....... .-+.+++.|...+.. +
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~---~g~~~~~~l~~l~~d-~ 74 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTAT---KGKQMVPVLNALGVD-L 74 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhc---CCccHHHHHHhcCCc-E
Confidence 5899999999 322110 01112333444444444456788 999999999876421100 012455556666654 5
Q ss_pred EEccCCCCC
Q 016360 136 SIFGNHDDA 144 (390)
Q Consensus 136 ~v~GNHD~~ 144 (390)
.++||||+.
T Consensus 75 ~~~GNHefd 83 (257)
T cd07406 75 ACFGNHEFD 83 (257)
T ss_pred Eeecccccc
Confidence 689999986
No 55
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.75 E-value=1.6e-06 Score=81.50 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=49.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
++|+++||+|-...++ ........++.+.+.+++++|| ++|.+||++++...... .....+++.|...+. -+
T Consensus 1 l~i~~~sD~hg~~~~~---~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~---~~~~~~~~~l~~~g~-d~ 73 (252)
T cd00845 1 LTILHTNDLHGHFEPA---GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTA---TKGEANIELMNALGY-DA 73 (252)
T ss_pred CEEEEecccccCcccc---CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhc---cCCcHHHHHHHhcCC-CE
Confidence 5899999999433222 1112233444444445556788 88999999998764210 111244555555554 45
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+++||||+..
T Consensus 74 ~~~GNHe~d~ 83 (252)
T cd00845 74 VTIGNHEFDY 83 (252)
T ss_pred Eeeccccccc
Confidence 6789999863
No 56
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.69 E-value=4.3e-08 Score=90.90 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=55.8
Q ss_pred EEEEEecCCCCCCCC-CCCC---CC-CChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCC
Q 016360 58 KISLFADLHFGENAW-TDWG---PL-QDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGI 132 (390)
Q Consensus 58 ki~~isDlH~~~~~~-~~~~---~~-~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 132 (390)
+.+++||+|+|.... ...| |. +..+.++.+.+++++.+||.||++||+.+..... . . ++.+.+.+.....
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~-~---~~~~~~~l~~~~~ 90 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-L-E---WRFIREFIEVTFR 90 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-H-H---HHHHHHHHHhcCC
Confidence 488999999997431 0001 11 2234567777777888999999999999876642 1 1 2233344445567
Q ss_pred CEEEEccCCCCC
Q 016360 133 PWASIFGNHDDA 144 (390)
Q Consensus 133 P~~~v~GNHD~~ 144 (390)
++++|+||||..
T Consensus 91 ~v~~V~GNHD~~ 102 (225)
T TIGR00024 91 DLILIRGNHDAL 102 (225)
T ss_pred cEEEECCCCCCc
Confidence 999999999976
No 57
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.67 E-value=1.1e-06 Score=76.63 Aligned_cols=80 Identities=23% Similarity=0.173 Sum_probs=48.7
Q ss_pred eEEEEEecCCCCCCC---CCCCCCC---CChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhC
Q 016360 57 FKISLFADLHFGENA---WTDWGPL---QDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVR 130 (390)
Q Consensus 57 ~ki~~isDlH~~~~~---~~~~~~~---~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (390)
++|--+||+|+...- ++-+|+. ...+..+..+.++.. -|.|++.||+.....-... . .=+..+..+
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~--eDiVllpGDiSWaM~l~ea--~----~Dl~~i~~L 72 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSP--EDIVLLPGDISWAMRLEEA--E----EDLRFIGDL 72 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCCh--hhEEEecccchhheechhh--h----hhhhhhhcC
Confidence 467789999997642 2222221 223334445544432 3899999999887653211 1 112334556
Q ss_pred CCCEEEEccCCCCC
Q 016360 131 GIPWASIFGNHDDA 144 (390)
Q Consensus 131 ~iP~~~v~GNHD~~ 144 (390)
.-.-|.+.||||+-
T Consensus 73 PG~K~m~rGNHDYW 86 (230)
T COG1768 73 PGTKYMIRGNHDYW 86 (230)
T ss_pred CCcEEEEecCCccc
Confidence 77789999999996
No 58
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.64 E-value=6.3e-08 Score=89.05 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=63.8
Q ss_pred eEEEEEecCCCCCCCCC-CCC---CC-CChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC
Q 016360 57 FKISLFADLHFGENAWT-DWG---PL-QDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG 131 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~-~~~---~~-~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (390)
-+.+++||+|+|....- ..| |. +..++.+.+.++++.++|+-+|++||+.++......++......+++.+...
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 57899999999976311 111 22 3345667778889999999999999999988765444455555666666554
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
-|.++.||||...
T Consensus 99 -evi~i~GNHD~~i 111 (235)
T COG1407 99 -EVIIIRGNHDNGI 111 (235)
T ss_pred -cEEEEeccCCCcc
Confidence 5999999999985
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.56 E-value=1.7e-05 Score=75.12 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=48.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
++|++++|+|-...++. ........++.+.+.++++++++++.+||++++...... ..-..+++.|...+..+.
T Consensus 1 i~il~~~D~H~~~~~~~--~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~---~~g~~~~~~ln~~g~d~~- 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDD--NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDL---DKGETIIKIMNAVGYDAV- 74 (257)
T ss_pred CEEEEeccCcccccCCC--CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhh---cCCcHHHHHHHhcCCcEE-
Confidence 48999999997543321 011122223333332333367999999999998653111 111245667777777774
Q ss_pred EccCCCCC
Q 016360 137 IFGNHDDA 144 (390)
Q Consensus 137 v~GNHD~~ 144 (390)
++||||+.
T Consensus 75 ~~GNHefd 82 (257)
T cd07408 75 TPGNHEFD 82 (257)
T ss_pred cccccccc
Confidence 67999986
No 60
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.55 E-value=3.1e-07 Score=90.69 Aligned_cols=120 Identities=20% Similarity=0.045 Sum_probs=72.5
Q ss_pred HHhheeeeeccCCCCCcCcccccCCCCCCceeecCCCCeEEEEEecCCCCCCC-CCCCCC-----CCChhHHHHHHHHHh
Q 016360 19 HLQAVLTVGFAFGQPQETIGLRTTPENDHLRMRAAGGPFKISLFADLHFGENA-WTDWGP-----LQDFNSVKVMSTVLD 92 (390)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ki~~isDlH~~~~~-~~~~~~-----~~~~~~~~~i~~~l~ 92 (390)
++.....+-+.-...+|+||-.-... .+ +..+|++.+||+|+-..- ....+. ..|....+.+..+..
T Consensus 18 lll~~e~v~~~~~~~~c~Wp~~~~~~------~~-~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~ 90 (410)
T KOG3662|consen 18 LLLYVEKVIYYRALFQCQWPGKKQWA------SN-ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQW 90 (410)
T ss_pred HHHHHhheeeeeecccccCCcccccc------CC-CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHh
Confidence 33334445555567789997422221 11 357999999999996531 110000 022223344445555
Q ss_pred hcCCCEEEEeCccCCCCchhhh-hHHHHHHHHHhhhH-hCCCCEEEEccCCCCCC
Q 016360 93 HETPDFVIYLGDVITANNMAVA-NASLYWDQAISPTR-VRGIPWASIFGNHDDAP 145 (390)
Q Consensus 93 ~~~pD~Vv~tGDl~~~~~~~~~-~~~~~~~~~~~~l~-~~~iP~~~v~GNHD~~~ 145 (390)
-.+||.|++.|||+|++....+ +..+.++++.+.+. +.++|+..++||||...
T Consensus 91 ~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf 145 (410)
T KOG3662|consen 91 RLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGF 145 (410)
T ss_pred ccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccccc
Confidence 5799999999999997764432 22334444444442 35899999999999974
No 61
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.51 E-value=2.6e-07 Score=86.70 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=48.9
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc-----CCCEEEEeCccCCCCch---hh-----hhHHHHHHHHHhh
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE-----TPDFVIYLGDVITANNM---AV-----ANASLYWDQAISP 126 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~-----~pD~Vv~tGDl~~~~~~---~~-----~~~~~~~~~~~~~ 126 (390)
+++||+|++... .....++.+.+.++.. +||.||++||+++.... .. ......+..+.+.
T Consensus 2 ~~iSDlHl~~~~-------~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd07386 2 VFISDVHVGSKT-------FLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEY 74 (243)
T ss_pred EEecccCCCchh-------hhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHH
Confidence 689999998632 1223445666666543 56999999999997321 00 0001112333333
Q ss_pred hHhC--CCCEEEEccCCCCCC
Q 016360 127 TRVR--GIPWASIFGNHDDAP 145 (390)
Q Consensus 127 l~~~--~iP~~~v~GNHD~~~ 145 (390)
+.++ ++|+++++||||...
T Consensus 75 l~~L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 75 LSDVPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHhcccCCeEEEeCCCCCccc
Confidence 3333 699999999999864
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.48 E-value=5.7e-05 Score=71.78 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=47.4
Q ss_pred eEEEEEecCCCCCCCCCC----------CCCCCChhHHHHHHHHHhhc-CCCEE-EEeCccCCCCchhhhhHHHHHHHHH
Q 016360 57 FKISLFADLHFGENAWTD----------WGPLQDFNSVKVMSTVLDHE-TPDFV-IYLGDVITANNMAVANASLYWDQAI 124 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~----------~~~~~~~~~~~~i~~~l~~~-~pD~V-v~tGDl~~~~~~~~~~~~~~~~~~~ 124 (390)
++|++.+|+|-...+... .+.......++.+.+.+++. .||.+ +.+||++++...... ..-..++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~---~~g~~~~ 77 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALY---TRGQAMV 77 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhh---cCChhHH
Confidence 479999999997543210 00111223333344444445 89977 569999988653211 1112455
Q ss_pred hhhHhCCCCEEEEccCCCCCC
Q 016360 125 SPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 125 ~~l~~~~iP~~~v~GNHD~~~ 145 (390)
+.|.. +++.++.||||+..
T Consensus 78 ~~l~~--~g~da~~GNHefd~ 96 (264)
T cd07411 78 DALNA--LGVDAMVGHWEFTY 96 (264)
T ss_pred HHHHh--hCCeEEeccccccc
Confidence 55555 44444449999863
No 63
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=87.51 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=50.8
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCC-CchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITA-NNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~-~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
.+||+|+||+|+... . .+..+.+.+ +..+.||+|++|||+++. .... ...+.++++.+. ...++
T Consensus 44 ~~~iv~lSDlH~~~~--------~-~~~~~~~~~-i~~~~~DlivltGD~~~~~~~~~----~~~~~~~L~~L~-~~~gv 108 (284)
T COG1408 44 GLKIVQLSDLHSLPF--------R-EEKLALLIA-IANELPDLIVLTGDYVDGDRPPG----VAALALFLAKLK-APLGV 108 (284)
T ss_pred CeEEEEeehhhhchh--------h-HHHHHHHHH-HHhcCCCEEEEEeeeecCCCCCC----HHHHHHHHHhhh-ccCCE
Confidence 589999999999763 1 223333333 345677999999999996 3322 122334555543 36789
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
|+|.||||...
T Consensus 109 ~av~GNHd~~~ 119 (284)
T COG1408 109 FAVLGNHDYGV 119 (284)
T ss_pred EEEeccccccc
Confidence 99999999985
No 64
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.42 E-value=5.9e-07 Score=74.08 Aligned_cols=70 Identities=29% Similarity=0.399 Sum_probs=47.2
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEcc
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFG 139 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~G 139 (390)
++++|+|++.... ... ......+..+||+||++||+++......... + .....+...++|+++++|
T Consensus 1 ~~~gD~h~~~~~~---------~~~-~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~G 66 (131)
T cd00838 1 AVISDIHGNLEAL---------EAV-LEAALAAAEKPDFVLVLGDLVGDGPDPEEVL---A-AALALLLLLGIPVYVVPG 66 (131)
T ss_pred CeeecccCCccch---------HHH-HHHHHhcccCCCEEEECCcccCCCCCchHHH---H-HHHHHhhcCCCCEEEeCC
Confidence 4789999986421 011 1134455689999999999999876532211 1 114455678999999999
Q ss_pred CCCC
Q 016360 140 NHDD 143 (390)
Q Consensus 140 NHD~ 143 (390)
|||.
T Consensus 67 NHDi 70 (131)
T cd00838 67 NHDI 70 (131)
T ss_pred CceE
Confidence 9994
No 65
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.40 E-value=3e-07 Score=84.22 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=45.9
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhh----hhHHHHHHHHHhhhHhCCCCEE
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAV----ANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~----~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
++|||+|++.... ........+.......+||.||++||+++...... ......+..+. .+...+++++
T Consensus 1 ~~iSDlHlg~~~~------~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~ 73 (217)
T cd07398 1 LFISDLHLGDGGP------AADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALL-RLADRGTRVY 73 (217)
T ss_pred CEeeeecCCCCCC------CHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHH-HHHHCCCeEE
Confidence 4799999997531 11111222221111358999999999998532111 11111112233 2345689999
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+++||||...
T Consensus 74 ~v~GNHD~~~ 83 (217)
T cd07398 74 YVPGNHDFLL 83 (217)
T ss_pred EECCCchHHH
Confidence 9999999874
No 66
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.37 E-value=1.5e-06 Score=87.21 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCeEEEEEecCCCCCCCCCC-CCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCch
Q 016360 55 GPFKISLFADLHFGENAWTD-WGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNM 111 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~-~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~ 111 (390)
+++||++.||.|+|+..... .+ .....+++.|..+.++++.|+|++.|||++...+
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg-~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRG-DDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred cceEEEEeecCccccccCCcccc-cchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 58999999999999865321 11 1234566667777778899999999999998764
No 67
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.37 E-value=1.3e-06 Score=90.45 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh---------hcCCCEEEEeCccCCCCchh-hh----------
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD---------HETPDFVIYLGDVITANNMA-VA---------- 114 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~---------~~~pD~Vv~tGDl~~~~~~~-~~---------- 114 (390)
..++++++||+|+|... ...+.+..+.+.++ +.+||.+|++||+++..... ..
T Consensus 242 ~~~~i~~ISDlHlgs~~-------~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~ 314 (504)
T PRK04036 242 EKVYAVFISDVHVGSKE-------FLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIY 314 (504)
T ss_pred CccEEEEEcccCCCCcc-------hhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhH
Confidence 46899999999998642 12234455555565 56899999999999863210 00
Q ss_pred hHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 115 NASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 115 ~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.....+.++++.+. ..+|++++|||||...
T Consensus 315 ~~~~~l~~~L~~L~-~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 315 EQYEAAAEYLKQIP-EDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHHHHHHHhhh-cCCeEEEecCCCcchh
Confidence 00112223333332 3689999999999864
No 68
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.37 E-value=0.00013 Score=70.33 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=46.0
Q ss_pred eEEEEEecCCCCCCCCCC--CCCCCChhHHHHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 57 FKISLFADLHFGENAWTD--WGPLQDFNSVKVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
++|++++|+|-...++.. .........++.+.+-+.++.|+ +++.+||++++........ .-...++.|...++-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~--~g~~~~~~~n~~g~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALL--QDEPTIEALNAMGVD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcc--cCCcHHHHHHhhCCe
Confidence 479999999944332110 00001222233333333334564 8999999997654311100 002345666666666
Q ss_pred EEEEccCCCCC
Q 016360 134 WASIFGNHDDA 144 (390)
Q Consensus 134 ~~~v~GNHD~~ 144 (390)
+ .++||||+.
T Consensus 79 a-~t~GNHefd 88 (288)
T cd07412 79 A-SAVGNHEFD 88 (288)
T ss_pred e-eeecccccc
Confidence 5 677999986
No 69
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.35 E-value=1.3e-06 Score=77.32 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=46.8
Q ss_pred EEEecCCCCCCCCCCC-C-CCCChh-HHHHHHHHHhh--cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 60 SLFADLHFGENAWTDW-G-PLQDFN-SVKVMSTVLDH--ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~-~-~~~~~~-~~~~i~~~l~~--~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
-.+||+|+|....... . ...... ..+.+.+.+++ .++|.||++||+++..... . ..+.+.+.+.|+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~-----~----~~~~l~~~~~~~ 72 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG-----T----ELELLSRLNGRK 72 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH-----H----HHHHHHhCCCCe
Confidence 3689999997531100 0 001111 22333333333 3789999999999977631 1 133445567899
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
++|+||||...
T Consensus 73 ~~v~GNHD~~~ 83 (168)
T cd07390 73 HLIKGNHDSSL 83 (168)
T ss_pred EEEeCCCCchh
Confidence 99999999863
No 70
>PHA02239 putative protein phosphatase
Probab=98.33 E-value=2e-06 Score=80.34 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=45.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh-c-CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-E-TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~-~-~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
+|+++|||+|-.. +.++.+.+.++. . ..|.||++||++|.+... ...+..+++. ...+.++
T Consensus 1 m~~~~IsDIHG~~------------~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s----~~v~~~l~~~-~~~~~~~ 63 (235)
T PHA02239 1 MAIYVVPDIHGEY------------QKLLTIMDKINNERKPEETIVFLGDYVDRGKRS----KDVVNYIFDL-MSNDDNV 63 (235)
T ss_pred CeEEEEECCCCCH------------HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCCh----HHHHHHHHHH-hhcCCCe
Confidence 4789999999421 233344444432 2 359999999999987642 2223333332 2335689
Q ss_pred EEEccCCCCC
Q 016360 135 ASIFGNHDDA 144 (390)
Q Consensus 135 ~~v~GNHD~~ 144 (390)
++++||||..
T Consensus 64 ~~l~GNHE~~ 73 (235)
T PHA02239 64 VTLLGNHDDE 73 (235)
T ss_pred EEEECCcHHH
Confidence 9999999975
No 71
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.32 E-value=0.0002 Score=68.72 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=47.2
Q ss_pred eEEEEEecCCCCCCCCCCC---------CCCCChhHHHHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhh
Q 016360 57 FKISLFADLHFGENAWTDW---------GPLQDFNSVKVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISP 126 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~---------~~~~~~~~~~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 126 (390)
++|++.+|+|-...+.... ........+..+.+.+.++.|+ +++.+||++++....... .-....+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~---~g~~~~~~ 77 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLY---KGNADAEF 77 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhc---CChHHHHH
Confidence 4799999999754321100 0001222222333333345677 555599999886532110 01244566
Q ss_pred hHhCCCCEEEEccCCCCCC
Q 016360 127 TRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 127 l~~~~iP~~~v~GNHD~~~ 145 (390)
|...++.+. ++||||+..
T Consensus 78 ln~~g~D~~-~lGNHefd~ 95 (281)
T cd07409 78 MNLLGYDAM-TLGNHEFDD 95 (281)
T ss_pred HHhcCCCEE-EeccccccC
Confidence 677777755 569999873
No 72
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.31 E-value=3.1e-05 Score=68.70 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=47.0
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHh-CCCCE
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRV-RGIPW 134 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~-~~iP~ 134 (390)
.+||+++||+|.... ......+.....++|+||++||.+...... .+ .. ...++
T Consensus 1 ~m~ilviSDtH~~~~------------~~~~~~~~~~~~~~d~vih~GD~~~~~~~~------~l-------~~~~~~~i 55 (172)
T COG0622 1 MMKILVISDTHGPLR------------AIEKALKIFNLEKVDAVIHAGDSTSPFTLD------AL-------EGGLAAKL 55 (172)
T ss_pred CcEEEEEeccCCChh------------hhhHHHHHhhhcCCCEEEECCCcCCccchH------Hh-------hcccccce
Confidence 378999999999541 122334445668999999999999876531 11 12 46789
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
++|.||-|...
T Consensus 56 ~~V~GN~D~~~ 66 (172)
T COG0622 56 IAVRGNCDGEV 66 (172)
T ss_pred EEEEccCCCcc
Confidence 99999999974
No 73
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.23 E-value=4.3e-06 Score=75.30 Aligned_cols=61 Identities=25% Similarity=0.235 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhC------------------CCCEEEEccCCCCCC
Q 016360 85 KVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVR------------------GIPWASIFGNHDDAP 145 (390)
Q Consensus 85 ~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~------------------~iP~~~v~GNHD~~~ 145 (390)
+.+..++...+||.|+++|||+++....+++....+.++.+.+-.. ++|++.|+||||...
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 4445555567999999999999876543333334444555544211 489999999999974
No 74
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.08 E-value=1e-05 Score=77.26 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=47.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-hcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-HETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+++++|+|+|-.. ..++.+.+.++ ..++|.++++||+++.++.+ . ++++.+.+++.++.
T Consensus 1 M~~~vIGDIHG~~------------~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s----~----~vl~~l~~l~~~~~ 60 (275)
T PRK00166 1 MATYAIGDIQGCY------------DELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS----L----EVLRFVKSLGDSAV 60 (275)
T ss_pred CcEEEEEccCCCH------------HHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH----H----HHHHHHHhcCCCeE
Confidence 4689999999642 23333333333 24689999999999988642 2 44455555677899
Q ss_pred EEccCCCCC
Q 016360 136 SIFGNHDDA 144 (390)
Q Consensus 136 ~v~GNHD~~ 144 (390)
+|.||||..
T Consensus 61 ~VlGNHD~~ 69 (275)
T PRK00166 61 TVLGNHDLH 69 (275)
T ss_pred EEecChhHH
Confidence 999999985
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.07 E-value=0.00027 Score=80.44 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=47.4
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEE-eCccCCCCchhhhhHHHHHHHHHhhhHhCCCC
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIY-LGDVITANNMAVANASLYWDQAISPTRVRGIP 133 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~-tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 133 (390)
.+++|++++|+|-... ....+..+.+.+.+.+||.+++ +||++++..... .......++.|...+.-
T Consensus 659 ~~l~Il~~nD~Hg~l~---------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~---~~~g~~~~~~ln~lg~d 726 (1163)
T PRK09419 659 WELTILHTNDFHGHLD---------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSN---LLKGLPVLKMMKEMGYD 726 (1163)
T ss_pred eEEEEEEEeecccCCC---------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhh---hcCChHHHHHHhCcCCC
Confidence 3599999999994321 1223333333344568998877 999998864211 00112455555555444
Q ss_pred EEEEccCCCCCC
Q 016360 134 WASIFGNHDDAP 145 (390)
Q Consensus 134 ~~~v~GNHD~~~ 145 (390)
+.++||||+..
T Consensus 727 -~~~~GNHEfd~ 737 (1163)
T PRK09419 727 -ASTFGNHEFDW 737 (1163)
T ss_pred -EEEeccccccc
Confidence 55999999863
No 76
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.02 E-value=0.00021 Score=67.42 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=53.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh-----------cCCCEEEEeCccCCCCchhh-------------
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-----------ETPDFVIYLGDVITANNMAV------------- 113 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~-----------~~pD~Vv~tGDl~~~~~~~~------------- 113 (390)
+|+.+||+|+|... .....++.+.+.|.- .+...+|++||.+++.....
T Consensus 1 ~i~~vSgL~ig~~~-------~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~ 73 (257)
T cd07387 1 YIALVSGLGLGGNA-------ESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKS 73 (257)
T ss_pred CEEEEcccccCCCc-------cchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhcccccc
Confidence 37899999999752 223345566655542 24568999999999654211
Q ss_pred ----hhHHHHHHHHHhhhHhCCCCEEEEccCCCCCCCCCC
Q 016360 114 ----ANASLYWDQAISPTRVRGIPWASIFGNHDDAPFEWP 149 (390)
Q Consensus 114 ----~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~~~~~ 149 (390)
.+....++.++..+. ..+|+.++|||||-....+|
T Consensus 74 ~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~~lP 112 (257)
T cd07387 74 SAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPANHSLP 112 (257)
T ss_pred chhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCcccccCC
Confidence 111223445555544 37999999999999864333
No 77
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.88 E-value=4.6e-05 Score=69.87 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=45.4
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh--------hcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD--------HETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG 131 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~--------~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (390)
++|||+|-.. ..++.+.+.++ ..+.|.+|++||+++.++...+ ....+.++.......+
T Consensus 1 ~vi~DIHG~~------------~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~-vl~~l~~l~~~~~~~~ 67 (208)
T cd07425 1 VAIGDLHGDL------------DAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIE-ILWLLYKLEQEAAKAG 67 (208)
T ss_pred CEEeCccCCH------------HHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHH-HHHHHHHHHHHHHhcC
Confidence 3689999843 23434443332 2468999999999998764311 1122222222223356
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
.++++++||||...
T Consensus 68 ~~v~~l~GNHE~~~ 81 (208)
T cd07425 68 GKVHFLLGNHELMN 81 (208)
T ss_pred CeEEEeeCCCcHHH
Confidence 78999999999874
No 78
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.82 E-value=4e-05 Score=70.07 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh-cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
||+++||+|-. ...++.+.+.++. .++|.++++||+++.+... . ++++.+.+ .++++
T Consensus 2 ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~----~----~~~~~l~~--~~~~~ 59 (207)
T cd07424 2 RDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPES----L----ACLELLLE--PWFHA 59 (207)
T ss_pred CEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH----H----HHHHHHhc--CCEEE
Confidence 68999999942 1233333333332 4689999999999977642 1 33333333 36899
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
|.||||...
T Consensus 60 v~GNhe~~~ 68 (207)
T cd07424 60 VRGNHEQMA 68 (207)
T ss_pred eECCChHHH
Confidence 999999864
No 79
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.77 E-value=6.3e-05 Score=69.28 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=43.0
Q ss_pred EEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccC
Q 016360 61 LFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGN 140 (390)
Q Consensus 61 ~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GN 140 (390)
+++|+|-. ...+..+.+.+....+|.+|++||+++.+... .+.+..+. .+...+.+++++.||
T Consensus 2 ~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~----~~~l~~l~-~~~~~~~~~~~l~GN 64 (225)
T cd00144 2 VIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDS----VEVIDLLL-ALKILPDNVILLRGN 64 (225)
T ss_pred EEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCc----HHHHHHHH-HhcCCCCcEEEEccC
Confidence 68999953 12344444444446789999999999987642 12222222 221114589999999
Q ss_pred CCCCC
Q 016360 141 HDDAP 145 (390)
Q Consensus 141 HD~~~ 145 (390)
||...
T Consensus 65 He~~~ 69 (225)
T cd00144 65 HEDML 69 (225)
T ss_pred chhhh
Confidence 99864
No 80
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.73 E-value=7.8e-05 Score=69.56 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=43.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh----------cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhh
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH----------ETPDFVIYLGDVITANNMAVANASLYWDQAISP 126 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~----------~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 126 (390)
+||++++|+|-.. ..++.+.+.++- .+.|.+|++||+++.+..+ .+.++. +..
T Consensus 1 ~~i~vigDIHG~~------------~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s----~evl~~-l~~ 63 (234)
T cd07423 1 GPFDIIGDVHGCY------------DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDS----PEVLRL-VMS 63 (234)
T ss_pred CCeEEEEECCCCH------------HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCH----HHHHHH-HHH
Confidence 3799999999853 233333333311 1368999999999987642 222322 222
Q ss_pred hHhCCCCEEEEccCCCCC
Q 016360 127 TRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 127 l~~~~iP~~~v~GNHD~~ 144 (390)
+.. .-.+++|.||||..
T Consensus 64 l~~-~~~~~~v~GNHE~~ 80 (234)
T cd07423 64 MVA-AGAALCVPGNHDNK 80 (234)
T ss_pred Hhh-CCcEEEEECCcHHH
Confidence 222 23588999999985
No 81
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.73 E-value=6.5e-05 Score=69.33 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=44.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh-cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
-|+.++||+|-.. ..++.+.+.++. .+.|.++++||++|.++.+ . ++++.+.+. .++
T Consensus 17 ~ri~vigDIHG~~------------~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s----~----~vl~~l~~~--~~~ 74 (218)
T PRK11439 17 RHIWLVGDIHGCF------------EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS----L----RCLQLLEEH--WVR 74 (218)
T ss_pred CeEEEEEcccCCH------------HHHHHHHHhcCCCcccCEEEEcCcccCCCcCH----H----HHHHHHHcC--Cce
Confidence 3899999999853 234333333433 3679999999999988742 2 333333333 357
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+|.||||...
T Consensus 75 ~v~GNHE~~~ 84 (218)
T PRK11439 75 AVRGNHEQMA 84 (218)
T ss_pred EeeCchHHHH
Confidence 8999999753
No 82
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.68 E-value=0.00011 Score=69.47 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=45.2
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-hcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-HETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
.+|+|+|-.. ..++.+.+.++ ..+.|.++++||+++.++.. . ++++.+.+++..+.+|.
T Consensus 2 yvIGDIHG~~------------~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s----~----evl~~l~~l~~~v~~Vl 61 (257)
T cd07422 2 YAIGDIQGCY------------DELQRLLEKINFDPAKDRLWLVGDLVNRGPDS----L----ETLRFVKSLGDSAKTVL 61 (257)
T ss_pred EEEECCCCCH------------HHHHHHHHhcCCCCCCCEEEEecCcCCCCcCH----H----HHHHHHHhcCCCeEEEc
Confidence 5799999743 23333333333 23679999999999988742 2 34455555666799999
Q ss_pred cCCCCCC
Q 016360 139 GNHDDAP 145 (390)
Q Consensus 139 GNHD~~~ 145 (390)
||||...
T Consensus 62 GNHD~~l 68 (257)
T cd07422 62 GNHDLHL 68 (257)
T ss_pred CCchHHH
Confidence 9999863
No 83
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.60 E-value=0.0033 Score=64.41 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCC----C------------C--CCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCC
Q 016360 228 AYMYFLDSGGGS----Y------------P--EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHK 289 (390)
Q Consensus 228 ~~l~~lDS~~g~----~------------~--g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~ 289 (390)
+.+++||++... . + .-++++|.+||++.|++... ...||..=.|+.......... .
T Consensus 264 ~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a---~~kvi~s~v~~~~~~~~~~~~---~ 337 (453)
T PF09423_consen 264 VEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQA---TWKVIGSSVPFSPLNFPDAAE---G 337 (453)
T ss_dssp EEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--S---SEEEEE-SS--S---SS-SS----S
T ss_pred eeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCC---cEEEEEeCCceeccccccccc---c
Confidence 679999997421 0 1 24899999999999998653 346677666654321110000 0
Q ss_pred CccCcccccc-chhhhhhhHHHHHHHhCCCc--eEEEeCcCCCCC
Q 016360 290 PCVGSINKES-VAAQEAEMGIMKILVKRTSV--KAVFVGHNHGLD 331 (390)
Q Consensus 290 ~~~g~~n~e~-v~~~~~~~~l~~~L~~~~~V--~~vf~GH~H~nd 331 (390)
...+.|. -..+....+|++.|.+. ++ .++++|-.|...
T Consensus 338 ---~~~~~d~W~g~~~er~~Ll~~l~~~-~~~~vV~LSGDvH~~~ 378 (453)
T PF09423_consen 338 ---LPFNMDSWDGYPAERQRLLDFLRES-GIRNVVFLSGDVHASA 378 (453)
T ss_dssp -----EETTSGGGSHHHHHHHHHHHHHT-T---EEEEE-SSSSEE
T ss_pred ---cccCCCchhhCHHHHHHHHHHHHhh-CCCCEEEEecCcchhe
Confidence 0001111 11222345799999765 44 389999999853
No 84
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.60 E-value=0.00015 Score=66.98 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-hcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-HETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
-||+++||+|-.. ..++.+.+.+. ..+.|.++++||+++.++.. . ++++.+.+ -.++
T Consensus 15 ~ri~visDiHg~~------------~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~----~----~~l~~l~~--~~~~ 72 (218)
T PRK09968 15 RHIWVVGDIHGEY------------QLLQSRLHQLSFCPETDLLISVGDNIDRGPES----L----NVLRLLNQ--PWFI 72 (218)
T ss_pred CeEEEEEeccCCH------------HHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH----H----HHHHHHhh--CCcE
Confidence 4899999999742 23333333333 34689999999999987642 2 23333333 2467
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
+|.||||...
T Consensus 73 ~v~GNHE~~~ 82 (218)
T PRK09968 73 SVKGNHEAMA 82 (218)
T ss_pred EEECchHHHH
Confidence 9999999753
No 85
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.60 E-value=0.00014 Score=68.31 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=43.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh---------cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhh
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH---------ETPDFVIYLGDVITANNMAVANASLYWDQAISPT 127 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~---------~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l 127 (390)
+|+.+|+|+|-.. +.++.+.+.++- ..-|.+|++||++|.++.. .+.++.+.+.
T Consensus 1 ~~~~vIGDIHG~~------------~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S----~~vl~~~~~~- 63 (245)
T PRK13625 1 MKYDIIGDIHGCY------------QEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHS----LRMIEIVWEL- 63 (245)
T ss_pred CceEEEEECccCH------------HHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcCh----HHHHHHHHHH-
Confidence 4789999999632 233333333321 1347999999999988642 3333333322
Q ss_pred HhCCCCEEEEccCCCCC
Q 016360 128 RVRGIPWASIFGNHDDA 144 (390)
Q Consensus 128 ~~~~iP~~~v~GNHD~~ 144 (390)
. ..-.++++.||||..
T Consensus 64 ~-~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 64 V-EKKAAYYVPGNHCNK 79 (245)
T ss_pred h-hCCCEEEEeCccHHH
Confidence 2 234799999999864
No 86
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.58 E-value=0.0059 Score=58.61 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=46.4
Q ss_pred CCeEEEEEecCCCCCCCCCCCC-CCCChhHH----HHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhhhH
Q 016360 55 GPFKISLFADLHFGENAWTDWG-PLQDFNSV----KVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISPTR 128 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~-~~~~~~~~----~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~ 128 (390)
.+++|++.+|+|-...+..... .....-.+ +.+.+...+.+|+ +++-+||.+++........ ..-....+.|.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~-~~g~~~~~~mN 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASP-PPGSYSNPIFR 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeec-CCChHHHHHHH
Confidence 3699999999996432210000 00011112 2233322334666 6677999999875321100 01123455555
Q ss_pred hCCCCEEEEccCCCCCC
Q 016360 129 VRGIPWASIFGNHDDAP 145 (390)
Q Consensus 129 ~~~iP~~~v~GNHD~~~ 145 (390)
..+.- ++++||||+..
T Consensus 83 ~mgyD-a~tlGNHEFd~ 98 (282)
T cd07407 83 MMPYD-LLTIGNHELYN 98 (282)
T ss_pred hcCCc-EEeecccccCc
Confidence 54433 56899999963
No 87
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.51 E-value=0.0038 Score=71.26 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=47.0
Q ss_pred CeEEEEEecCCCCCCCCCCCC----CCCChhHHHHHHHHHhhcCCCEEEE-eCccCCCCchhhhhHH-H-----HHHHHH
Q 016360 56 PFKISLFADLHFGENAWTDWG----PLQDFNSVKVMSTVLDHETPDFVIY-LGDVITANNMAVANAS-L-----YWDQAI 124 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~pD~Vv~-tGDl~~~~~~~~~~~~-~-----~~~~~~ 124 (390)
+++|++.+|+|-.-.++.... .......++.+.+.+.++.|+.+++ +||++++......... . ....++
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i 120 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI 120 (1163)
T ss_pred EEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence 599999999998654321000 0012222233333333456776555 9999998752110000 0 001344
Q ss_pred hhhHhCCCCEEEEccCCCCC
Q 016360 125 SPTRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 125 ~~l~~~~iP~~~v~GNHD~~ 144 (390)
+.|...+.- ++++||||+.
T Consensus 121 ~~mN~lgyD-a~~lGNHEFd 139 (1163)
T PRK09419 121 KAMNALGYD-AGTLGNHEFN 139 (1163)
T ss_pred HHHhhcCcc-EEeecccccc
Confidence 555555555 4569999986
No 88
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.49 E-value=0.0072 Score=65.63 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHhCCCceEEEeCcCCCCCcccCCCCeeEeecC
Q 016360 313 LVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 345 (390)
Q Consensus 313 L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~ 345 (390)
|.+.++|.+|+.||.|.. +....+|++++-++
T Consensus 272 l~~v~gID~IlgGHsH~~-~~~~ingv~vvqaG 303 (780)
T PRK09418 272 LTEVPGVDAVLMGHSHTE-VKDVFNGVPVVMPG 303 (780)
T ss_pred HhcCCCCCEEEECCCCCc-ccccCCCEEEEEcC
Confidence 466789999999999985 45566788777554
No 89
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.47 E-value=0.00035 Score=64.70 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=42.3
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc--------CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC
Q 016360 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE--------TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG 131 (390)
Q Consensus 60 ~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~--------~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (390)
.+|+|+|-.. +.++.+.+.+... ..|.+|++||++|.++.. .+.++.+.+ +...
T Consensus 2 ~vIGDIHG~~------------~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S----~~vl~~l~~-l~~~- 63 (222)
T cd07413 2 DFIGDIHGHA------------EKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEI----RELLEIVKS-MVDA- 63 (222)
T ss_pred EEEEeccCCH------------HHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCH----HHHHHHHHH-hhcC-
Confidence 5799999853 2343333333221 468999999999988752 333333332 2222
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
-.+.++.||||...
T Consensus 64 ~~~~~l~GNHE~~l 77 (222)
T cd07413 64 GHALAVMGNHEFNA 77 (222)
T ss_pred CCEEEEEccCcHHH
Confidence 26899999999764
No 90
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.47 E-value=0.029 Score=53.93 Aligned_cols=83 Identities=14% Similarity=0.009 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc----CC-CEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE----TP-DFVIYLGDVITANNMAVANASLYWDQAISPTRVRG 131 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~----~p-D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (390)
++|++.+|+|-...++.. .......+..+.+.+.++ .| -+++-+||++.+....... .-.-.++.|...+
T Consensus 1 ltIl~tnD~Hg~l~~~~~--~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~---~g~~~~~~~n~~g 75 (285)
T cd07405 1 ITILHTNDHHGHFWPNGT--GEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQ---DAEPDFRGMNLVG 75 (285)
T ss_pred CEEEEEcccccccccCCC--CCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhc---CcchHHHHHHhhC
Confidence 579999999987543211 001122222222222221 33 4899999999876532110 0123445666667
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
+-+. ++||||+..
T Consensus 76 ~Da~-~~GNHEfD~ 88 (285)
T cd07405 76 YDAM-AVGNHEFDN 88 (285)
T ss_pred CcEE-eeccccccc
Confidence 7665 559999873
No 91
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.43 E-value=0.00026 Score=67.37 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=44.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-hcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-HETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
++-+|+|+|-.. ..++.+.+.++ ....|.++++||+++.++.+ . ++++.+.+.+..+.+
T Consensus 2 ~~YvIGDIHGc~------------daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s----l----evL~~l~~l~~~~~~ 61 (279)
T TIGR00668 2 ATYLIGDLHGCY------------DELQALLERVEFDPGQDTLWLTGDLVARGPGS----L----EVLRYVKSLGDAVRL 61 (279)
T ss_pred cEEEEEcccCCH------------HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH----H----HHHHHHHhcCCCeEE
Confidence 467899999843 23333333343 23579999999999988742 2 334444455555779
Q ss_pred EccCCCCC
Q 016360 137 IFGNHDDA 144 (390)
Q Consensus 137 v~GNHD~~ 144 (390)
|.||||..
T Consensus 62 VlGNHD~~ 69 (279)
T TIGR00668 62 VLGNHDLH 69 (279)
T ss_pred EEChhHHH
Confidence 99999974
No 92
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.39 E-value=0.0009 Score=57.47 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhH--HHHHHHHHhhcCC-CEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNS--VKVMSTVLDHETP-DFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~--~~~i~~~l~~~~p-D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
.+-.+||+|++...-....|....+. ...+.+.++.-+| |.|-+.||++.+.... . .+...+..++-..
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~-----~---~a~~IlerLnGrk 76 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRE-----R---AAGLILERLNGRK 76 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchh-----h---HHHHHHHHcCCcE
Confidence 46779999999754211112221111 1223333344466 7899999999887642 1 2233345567778
Q ss_pred EEEccCCCCCC
Q 016360 135 ASIFGNHDDAP 145 (390)
Q Consensus 135 ~~v~GNHD~~~ 145 (390)
..|+||||-..
T Consensus 77 hlv~GNhDk~~ 87 (186)
T COG4186 77 HLVPGNHDKCH 87 (186)
T ss_pred EEeeCCCCCCc
Confidence 99999999864
No 93
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.39 E-value=0.0069 Score=59.07 Aligned_cols=81 Identities=17% Similarity=0.105 Sum_probs=43.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh-----cCCCEEEEeCccCCCCchhhhhH-----HHHHHHHHhh
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-----ETPDFVIYLGDVITANNMAVANA-----SLYWDQAISP 126 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~-----~~pD~Vv~tGDl~~~~~~~~~~~-----~~~~~~~~~~ 126 (390)
++|++.+|+|-..... .....+..+.+.+.+ .+.-+++.+||++++........ ...-....+.
T Consensus 1 l~IlhtnD~Hg~~~~~------gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~ 74 (313)
T cd08162 1 LQLLHTSDGESGLLAE------DDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILI 74 (313)
T ss_pred CeEEEecccccCcccc------CCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHH
Confidence 5799999999764321 112122222222222 22358999999999865321000 0001134455
Q ss_pred hHhCCCCEEEEccCCCCC
Q 016360 127 TRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 127 l~~~~iP~~~v~GNHD~~ 144 (390)
|...++- +.++||||+.
T Consensus 75 mN~~g~D-a~tlGNHEFD 91 (313)
T cd08162 75 LNALGVQ-AIALGNHEFD 91 (313)
T ss_pred HhccCCc-EEeccccccc
Confidence 5555554 4679999986
No 94
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.38 E-value=0.00074 Score=64.60 Aligned_cols=71 Identities=23% Similarity=0.163 Sum_probs=42.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh------cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH------ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG 131 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~------~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (390)
++..|+|+|-... .++.+.+.+.. ...+.+|++||++|.+... ...++.+.+ +....
T Consensus 3 ~iyaIGDIHG~~d------------~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS----~eVld~L~~-l~~~~ 65 (304)
T cd07421 3 VVICVGDIHGYIS------------KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET----RKVIDFLIS-LPEKH 65 (304)
T ss_pred eEEEEEeccCCHH------------HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH----HHHHHHHHH-hhhcc
Confidence 6889999998532 33333332321 2357899999999988742 222222222 22221
Q ss_pred --CCEEEEccCCCCCC
Q 016360 132 --IPWASIFGNHDDAP 145 (390)
Q Consensus 132 --iP~~~v~GNHD~~~ 145 (390)
..+.++.||||..-
T Consensus 66 ~~~~vv~LrGNHE~~~ 81 (304)
T cd07421 66 PKQRHVFLCGNHDFAF 81 (304)
T ss_pred cccceEEEecCChHHH
Confidence 25889999999653
No 95
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.36 E-value=0.03 Score=58.93 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=46.1
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-h---cCC-CEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhC
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-H---ETP-DFVIYLGDVITANNMAVANASLYWDQAISPTRVR 130 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-~---~~p-D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (390)
+++|++.+|+|-...+.. .+. .....+..+.+.+. + ..| -+++.+||.+.+....... .-...++.|...
T Consensus 34 ~ltil~tnD~Hg~~~~~~-~~~-~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~---~g~~~i~~mN~~ 108 (551)
T PRK09558 34 KITILHTNDHHGHFWRNE-YGE-YGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQ---DAEPDFRGMNLI 108 (551)
T ss_pred EEEEEEecccCCCccccc-cCC-ccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhc---CCchhHHHHhcC
Confidence 599999999998754311 011 11112222222121 1 233 5789999999876432100 012345556667
Q ss_pred CCCEEEEccCCCCCC
Q 016360 131 GIPWASIFGNHDDAP 145 (390)
Q Consensus 131 ~iP~~~v~GNHD~~~ 145 (390)
++-+.. +||||+..
T Consensus 109 g~Da~t-lGNHEFD~ 122 (551)
T PRK09558 109 GYDAMA-VGNHEFDN 122 (551)
T ss_pred CCCEEc-ccccccCc
Confidence 776655 59999873
No 96
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.31 E-value=0.016 Score=63.20 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=47.6
Q ss_pred CeEEEEEecCCCCCCCCCCCC--C--CCCh-hHHHHHHHHHhhcCC-CEEEEeCccCCCCchhhhhHH------HHHHHH
Q 016360 56 PFKISLFADLHFGENAWTDWG--P--LQDF-NSVKVMSTVLDHETP-DFVIYLGDVITANNMAVANAS------LYWDQA 123 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~--~--~~~~-~~~~~i~~~l~~~~p-D~Vv~tGDl~~~~~~~~~~~~------~~~~~~ 123 (390)
+++|++.+|+|-......-+. + .... +....|.+ +.++.+ -++|-+||++++....+.... ....-+
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~-~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEE-AKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHH-HHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 699999999998754321110 0 0111 12222222 223344 478999999999763211000 000124
Q ss_pred HhhhHhCCCCEEEEccCCCCCC
Q 016360 124 ISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 124 ~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.+.|..++.- +.++||||+..
T Consensus 194 i~amN~LGyD-A~tLGNHEFDy 214 (814)
T PRK11907 194 YAALEALGFD-AGTLGNHEFNY 214 (814)
T ss_pred HHHHhccCCC-EEEechhhccc
Confidence 5566665554 56899999863
No 97
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.011 Score=61.61 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCeEEEEEecCCCCCCCCC--CCCC-CCC-hhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhC
Q 016360 55 GPFKISLFADLHFGENAWT--DWGP-LQD-FNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVR 130 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~--~~~~-~~~-~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (390)
.+++|++.+|+|-...... .... ... .+....+.++-++.+..++|-+||++++....+.. ..-...++.|...
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~--~~g~~~~~~mN~m 102 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYL--TKGEPTVDLLNAL 102 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccc--cCCChHHHHHhhc
Confidence 4699999999998765211 0011 011 12223333333344567899999999996532210 0011333444443
Q ss_pred CCCEEEEccCCCCCC
Q 016360 131 GIPWASIFGNHDDAP 145 (390)
Q Consensus 131 ~iP~~~v~GNHD~~~ 145 (390)
+.- +.+.|||++..
T Consensus 103 ~yD-a~tiGNHEFd~ 116 (517)
T COG0737 103 GYD-AMTLGNHEFDY 116 (517)
T ss_pred CCc-EEeeccccccc
Confidence 332 56889999974
No 98
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.22 E-value=0.042 Score=58.88 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=46.7
Q ss_pred CeEEEEEecCCCCCCCCCCCC--C--CCChhHHHHHHHHHhhcCC-CEEEEeCccCCCCchhhhhHHHHH-----HHHHh
Q 016360 56 PFKISLFADLHFGENAWTDWG--P--LQDFNSVKVMSTVLDHETP-DFVIYLGDVITANNMAVANASLYW-----DQAIS 125 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~--~--~~~~~~~~~i~~~l~~~~p-D~Vv~tGDl~~~~~~~~~~~~~~~-----~~~~~ 125 (390)
+++|++.+|+|-.-.+..-+. + ......++.+.+.+.++.+ -++|-+||++++....+.....-+ .-+.+
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~ 104 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYK 104 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHH
Confidence 699999999998654321110 0 0111122222222223334 478999999998763210000000 02455
Q ss_pred hhHhCCCCEEEEccCCCCC
Q 016360 126 PTRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 126 ~l~~~~iP~~~v~GNHD~~ 144 (390)
.|..++.- +.++||||+.
T Consensus 105 amN~lgyD-a~tlGNHEFd 122 (649)
T PRK09420 105 AMNTLDYD-VGNLGNHEFN 122 (649)
T ss_pred HHHhcCCc-EEeccchhhh
Confidence 66655544 5689999986
No 99
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.12 E-value=0.028 Score=60.04 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=46.4
Q ss_pred CeEEEEEecCCCCCCCCCCC--CC--CCCh-hHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHH-----HHHHHHh
Q 016360 56 PFKISLFADLHFGENAWTDW--GP--LQDF-NSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASL-----YWDQAIS 125 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~--~~--~~~~-~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~-----~~~~~~~ 125 (390)
+++|++.+|+|-.-....-+ .+ .... +....+.++-++..--++|-+||++++....+..... ...-+.+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~ 81 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYK 81 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHH
Confidence 48999999999875432100 01 0111 1222222222222235889999999987642110000 0012445
Q ss_pred hhHhCCCCEEEEccCCCCC
Q 016360 126 PTRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 126 ~l~~~~iP~~~v~GNHD~~ 144 (390)
.|..++.- +.++||||+.
T Consensus 82 ~mN~lgyD-a~tlGNHEFd 99 (626)
T TIGR01390 82 AMNLLKYD-VGNLGNHEFN 99 (626)
T ss_pred HHhhcCcc-EEeccccccc
Confidence 55555554 4789999986
No 100
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.93 E-value=0.16 Score=47.95 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=46.0
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhH-HHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNS-VKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~-~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
||+.+.|+=-.. .... .+.+.++.++.++|++|.+||.+.++.... .+..+.|.+.++-+..
T Consensus 1 ~ilfigdi~g~~----------G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~-------~~~~~~L~~~G~D~iT 63 (255)
T cd07382 1 KILFIGDIVGKP----------GRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT-------PKIAKELLSAGVDVIT 63 (255)
T ss_pred CEEEEEeCCCHH----------HHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC-------HHHHHHHHhcCCCEEE
Confidence 467777773322 1222 345555555678999999999998763221 2556667778888665
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
+ |||++..
T Consensus 64 l-GNH~fD~ 71 (255)
T cd07382 64 M-GNHTWDK 71 (255)
T ss_pred e-cccccCc
Confidence 5 9998874
No 101
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=96.88 E-value=0.058 Score=56.76 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=44.4
Q ss_pred eEEEEEecCCCCCCCCCC----CCCC--CChhHHHHHHHHHhh---cCC-CEEEEeCccCCCCchhhhhHHHHHHHHHhh
Q 016360 57 FKISLFADLHFGENAWTD----WGPL--QDFNSVKVMSTVLDH---ETP-DFVIYLGDVITANNMAVANASLYWDQAISP 126 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~----~~~~--~~~~~~~~i~~~l~~---~~p-D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 126 (390)
++|++++|+|-.-.+... .+.. ...--+..+..++++ +.| -+++.+||.+.+....... .-+..++.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~---~g~~~i~~ 77 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLF---GGRADAAL 77 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhc---CCHHHHHH
Confidence 579999999965332100 0000 000012333333332 334 5888999999886532100 01123445
Q ss_pred hHhCCCCEEEEccCCCCCC
Q 016360 127 TRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 127 l~~~~iP~~~v~GNHD~~~ 145 (390)
|...++- +.++||||+..
T Consensus 78 ~N~~g~D-a~~lGNHEFd~ 95 (550)
T TIGR01530 78 MNAAGFD-FFTLGNHEFDA 95 (550)
T ss_pred HhccCCC-EEEeccccccC
Confidence 5544443 56899999863
No 102
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.78 E-value=0.0033 Score=59.65 Aligned_cols=75 Identities=19% Similarity=0.083 Sum_probs=42.7
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh--cCCCEEEEeCccCCCCchhhhh---------HHHHHHHHHhhh
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH--ETPDFVIYLGDVITANNMAVAN---------ASLYWDQAISPT 127 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~pD~Vv~tGDl~~~~~~~~~~---------~~~~~~~~~~~l 127 (390)
|++..|+|-.. ....+.+...-+. .++|+||++||+.......+.+ ....|.++++-.
T Consensus 1 i~v~Gd~HG~~-----------~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~ 69 (262)
T cd00844 1 IAVEGCCHGEL-----------DKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGE 69 (262)
T ss_pred CEEEecCCccH-----------HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCC
Confidence 56788888732 1122333332222 4799999999996543322111 011122333334
Q ss_pred HhCCCCEEEEccCCCCC
Q 016360 128 RVRGIPWASIFGNHDDA 144 (390)
Q Consensus 128 ~~~~iP~~~v~GNHD~~ 144 (390)
...++|+++|.||||..
T Consensus 70 ~~~p~~t~fi~GNHE~~ 86 (262)
T cd00844 70 KKAPILTIFIGGNHEAS 86 (262)
T ss_pred ccCCeeEEEECCCCCCH
Confidence 45778889999999975
No 103
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.70 E-value=0.0021 Score=58.66 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHH---h-hcCCCEEEEeCccCCCCchhhh---------hHHHHHHHHHh
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVL---D-HETPDFVIYLGDVITANNMAVA---------NASLYWDQAIS 125 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l---~-~~~pD~Vv~tGDl~~~~~~~~~---------~~~~~~~~~~~ 125 (390)
|+++||+|++.+. ..++.+.+.+ + +.+|+.+|++|+.++....... .....+.++.+
T Consensus 1 Iv~~Sg~~~~~~~----------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (209)
T PF04042_consen 1 IVFASGPFLDSDN----------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDS 70 (209)
T ss_dssp EEEEES--CTTT-----------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHH
T ss_pred CEEEecCccCCCH----------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHH
Confidence 6899999998532 2344445544 4 6679999999999997543311 11112223333
Q ss_pred hhHh--CCCCEEEEccCCCCCC
Q 016360 126 PTRV--RGIPWASIFGNHDDAP 145 (390)
Q Consensus 126 ~l~~--~~iP~~~v~GNHD~~~ 145 (390)
.+.+ ..+++..|||+||...
T Consensus 71 ~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 71 FLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp HHCCCHCCSEEEEE--TTCTT-
T ss_pred HHhhcccccEEEEeCCCccccc
Confidence 3322 4689999999999875
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.67 E-value=0.34 Score=46.08 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=47.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHH-HHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSV-KVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~-~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+||+.+.|+=-.. ..+.+ +.+.++.++.++||+|.+||.+.++.... .+..+.|.+.++-+.
T Consensus 1 m~ilfiGDi~G~~----------Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~-------~~~~~~L~~~GvDvi 63 (266)
T TIGR00282 1 IKFLFIGDVYGKA----------GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT-------LKIYEFLKQSGVNYI 63 (266)
T ss_pred CeEEEEEecCCHH----------HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC-------HHHHHHHHhcCCCEE
Confidence 4788899985211 12233 34445445678999999999997652211 255666778899988
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
.+ |||.+..
T Consensus 64 T~-GNH~~Dk 72 (266)
T TIGR00282 64 TM-GNHTWFQ 72 (266)
T ss_pred Ec-cchhccC
Confidence 77 9999875
No 105
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.56 E-value=0.0067 Score=57.89 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=44.5
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
++++++|+|-.. ..+..+.+.......+.+|+.||++|.+... .+.+..+.......+-.++.+
T Consensus 29 ~i~vvGDiHG~~------------~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s----~e~l~~l~~lk~~~p~~v~ll 92 (271)
T smart00156 29 PVTVCGDIHGQF------------DDLLRLFDLNGPPPDTNYVFLGDYVDRGPFS----IEVILLLFALKILYPNRVVLL 92 (271)
T ss_pred CEEEEEeCcCCH------------HHHHHHHHHcCCCCCceEEEeCCccCCCCCh----HHHHHHHHHHHhcCCCCEEEE
Confidence 689999999743 1222222323334568999999999988743 222222222112234468999
Q ss_pred ccCCCCCC
Q 016360 138 FGNHDDAP 145 (390)
Q Consensus 138 ~GNHD~~~ 145 (390)
.||||...
T Consensus 93 rGNHE~~~ 100 (271)
T smart00156 93 RGNHESRS 100 (271)
T ss_pred eccccHHH
Confidence 99999864
No 106
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0049 Score=62.12 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHh-----hcCCCEEEEeCccCCCCchhhhhH--------HHHHH
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD-----HETPDFVIYLGDVITANNMAVANA--------SLYWD 121 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~-----~~~pD~Vv~tGDl~~~~~~~~~~~--------~~~~~ 121 (390)
..++++++||+|.|... .-.+....+.+.++ +.+...++++||++|+......+. .+.++
T Consensus 224 e~v~v~~isDih~GSk~-------F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~ 296 (481)
T COG1311 224 ERVYVALISDIHRGSKE-------FLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYE 296 (481)
T ss_pred cceEEEEEeeeecccHH-------HHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHH
Confidence 46899999999998742 11122333333333 235689999999999654321111 01133
Q ss_pred HHHhhhHh--CCCCEEEEccCCCCCC
Q 016360 122 QAISPTRV--RGIPWASIFGNHDDAP 145 (390)
Q Consensus 122 ~~~~~l~~--~~iP~~~v~GNHD~~~ 145 (390)
++.+.|.+ ..|.+++.|||||...
T Consensus 297 ~~A~~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 297 ELAEFLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHHHHHhhCCCCceEEEecCCCCccc
Confidence 34444433 3467999999999875
No 107
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.38 E-value=0.01 Score=57.63 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=43.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
++++++|+|-.. . .+..+-+.......+.+|++||++|.+... .+.+..++.......--++.+
T Consensus 44 ~i~ViGDIHG~~-----------~-dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s----~Evi~lL~~lki~~p~~v~lL 107 (305)
T cd07416 44 PVTVCGDIHGQF-----------Y-DLLKLFEVGGSPANTRYLFLGDYVDRGYFS----IECVLYLWALKILYPKTLFLL 107 (305)
T ss_pred CEEEEEeCCCCH-----------H-HHHHHHHhcCCCCCceEEEECCccCCCCCh----HHHHHHHHHHHhhcCCCEEEE
Confidence 588999999743 1 222222333334458999999999988742 222222222112233458999
Q ss_pred ccCCCCC
Q 016360 138 FGNHDDA 144 (390)
Q Consensus 138 ~GNHD~~ 144 (390)
.||||..
T Consensus 108 RGNHE~~ 114 (305)
T cd07416 108 RGNHECR 114 (305)
T ss_pred eCCCcHH
Confidence 9999986
No 108
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.25 E-value=0.01 Score=57.96 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=42.2
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE-TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
++++++|+|-... +.++.+ +..... ..+..|++||++|.+... .+.+.-++..-...+-.++.
T Consensus 52 ~~~vvGDiHG~~~-----------dL~~il-~~~g~~~~~~~~lFLGDyVDRG~~s----~Evl~ll~~lk~~~p~~v~l 115 (321)
T cd07420 52 QVTICGDLHGKLD-----------DLFLIF-YKNGLPSPENPYVFNGDFVDRGKRS----IEILIILFAFFLVYPNEVHL 115 (321)
T ss_pred CeEEEEeCCCCHH-----------HHHHHH-HHcCCCCccceEEEeccccCCCCCc----HHHHHHHHHHhhcCCCcEEE
Confidence 6899999998531 122222 222112 236899999999988742 22222222211123345899
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
+.|||+...
T Consensus 116 lRGNHE~~~ 124 (321)
T cd07420 116 NRGNHEDHI 124 (321)
T ss_pred ecCchhhhh
Confidence 999999874
No 109
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.03 E-value=0.023 Score=54.62 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=42.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhH-hCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTR-VRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~-~~~iP~~~ 136 (390)
.+.+++|+|-.. . .+..+-+.......+.+|++||++|.+... .+.+..+. .++ ..+-.++.
T Consensus 43 ~i~vvGDIHG~~-----------~-dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s----~evl~ll~-~lk~~~p~~v~l 105 (285)
T cd07415 43 PVTVCGDIHGQF-----------Y-DLLELFRVGGDPPDTNYLFLGDYVDRGYYS----VETFLLLL-ALKVRYPDRITL 105 (285)
T ss_pred CEEEEEeCCCCH-----------H-HHHHHHHHcCCCCCCeEEEEeEECCCCcCH----HHHHHHHH-HHhhcCCCcEEE
Confidence 488899999742 1 222222222333457899999999988642 22222222 222 23446999
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
+.||||...
T Consensus 106 lrGNHE~~~ 114 (285)
T cd07415 106 LRGNHESRQ 114 (285)
T ss_pred EecccchHh
Confidence 999999864
No 110
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.98 E-value=0.016 Score=57.57 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=42.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCC-CEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP-DFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~p-D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
-++.+++|+|-.. ..+..+.+....... +.+|++||++|.+... .+.+..+........--++
T Consensus 66 ~~i~VvGDIHG~~------------~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~S----lEvl~lL~~lki~~p~~v~ 129 (377)
T cd07418 66 CEVVVVGDVHGQL------------HDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWG----LETFLLLLSWKVLLPDRVY 129 (377)
T ss_pred CCEEEEEecCCCH------------HHHHHHHHHhCCCCCCceEEEeccccCCCCCh----HHHHHHHHHHhhccCCeEE
Confidence 4699999999853 122222222222223 4699999999987642 2222222221122334589
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
.+.||||...
T Consensus 130 lLRGNHE~~~ 139 (377)
T cd07418 130 LLRGNHESKF 139 (377)
T ss_pred EEeeeccccc
Confidence 9999999874
No 111
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.88 E-value=0.027 Score=54.40 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
.+++++|+|-.. ..+..+-+.......+-+|+.||++|.+... .+.+..++..-....-.++.+
T Consensus 51 ~i~viGDIHG~~------------~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s----~e~i~ll~~lk~~~p~~i~ll 114 (293)
T cd07414 51 PLKICGDIHGQY------------YDLLRLFEYGGFPPESNYLFLGDYVDRGKQS----LETICLLLAYKIKYPENFFLL 114 (293)
T ss_pred ceEEEEecCCCH------------HHHHHHHHhcCCCCcceEEEEeeEecCCCCc----HHHHHHHHHhhhhCCCcEEEE
Confidence 488899999742 1222222223334557899999999987643 122222221111223358999
Q ss_pred ccCCCCCC
Q 016360 138 FGNHDDAP 145 (390)
Q Consensus 138 ~GNHD~~~ 145 (390)
.||||...
T Consensus 115 rGNHE~~~ 122 (293)
T cd07414 115 RGNHECAS 122 (293)
T ss_pred ecccchhh
Confidence 99999864
No 112
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.64 E-value=0.024 Score=55.31 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
++++++|+|-.. ..+..+-+.......+-.|+.||++|.+... .+.+..++.......-.++.+
T Consensus 60 ~i~vvGDIHG~~------------~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s----~evl~ll~~lki~~p~~v~ll 123 (320)
T PTZ00480 60 PLKICGDVHGQY------------FDLLRLFEYGGYPPESNYLFLGDYVDRGKQS----LETICLLLAYKIKYPENFFLL 123 (320)
T ss_pred CeEEEeecccCH------------HHHHHHHHhcCCCCcceEEEeceecCCCCCc----HHHHHHHHHhcccCCCceEEE
Confidence 488899999742 1222222223333457789999999987643 122212221111223358999
Q ss_pred ccCCCCCC
Q 016360 138 FGNHDDAP 145 (390)
Q Consensus 138 ~GNHD~~~ 145 (390)
.||||...
T Consensus 124 RGNHE~~~ 131 (320)
T PTZ00480 124 RGNHECAS 131 (320)
T ss_pred ecccchhh
Confidence 99999864
No 113
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.54 E-value=0.033 Score=54.36 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=41.7
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE-TPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
-++.+++|+|-.. .+..+.+ ...... .-|..|++||++|.+... .+.+..++.......--++
T Consensus 60 ~~~~VvGDIHG~~-----------~dL~~ll-~~~g~~~~~~~ylFLGDyVDRG~~S----~Evl~ll~~lki~~p~~v~ 123 (316)
T cd07417 60 EKITVCGDTHGQF-----------YDLLNIF-ELNGLPSETNPYLFNGDFVDRGSFS----VEVILTLFAFKLLYPNHFH 123 (316)
T ss_pred ceeEEeecccCCH-----------HHHHHHH-HhcCCCCccCeEEEEeeEecCCCCh----HHHHHHHHHhhhccCCceE
Confidence 4689999999743 1122222 222211 225899999999988642 2222222211112233588
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
.+.|||+...
T Consensus 124 lLRGNHE~~~ 133 (316)
T cd07417 124 LNRGNHETDN 133 (316)
T ss_pred EEeeccchHH
Confidence 9999999853
No 114
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.42 E-value=0.043 Score=53.19 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=41.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
.+.+++|+|-... .+..+-+.+.....+.+|+.||++|.+... .+.+..++.......--++.+
T Consensus 44 ~i~vvGDIHG~~~------------~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s----~evl~ll~~lk~~~p~~v~ll 107 (303)
T PTZ00239 44 PVNVCGDIHGQFY------------DLQALFKEGGDIPNANYIFIGDFVDRGYNS----VETMEYLLCLKVKYPGNITLL 107 (303)
T ss_pred CEEEEEeCCCCHH------------HHHHHHHhcCCCCCceEEEeeeEcCCCCCH----HHHHHHHHHhhhcCCCcEEEE
Confidence 3888999997431 222222222223457899999999988642 222222221111223348999
Q ss_pred ccCCCCCC
Q 016360 138 FGNHDDAP 145 (390)
Q Consensus 138 ~GNHD~~~ 145 (390)
.||||...
T Consensus 108 rGNHE~~~ 115 (303)
T PTZ00239 108 RGNHESRQ 115 (303)
T ss_pred ecccchHH
Confidence 99999864
No 115
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.15 Score=52.78 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceE-EEeC
Q 016360 247 AQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKA-VFVG 325 (390)
Q Consensus 247 ~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~-vf~G 325 (390)
.|.+|....++...- .-.|++.|.|.-.... + + ....++...+|++.. ||-|
T Consensus 212 ~~~~~~~~m~~~~~i---dlii~lgH~~~~~~~e------------~----~--------~~~~~ir~~~p~t~IqviGG 264 (602)
T KOG4419|consen 212 TQSEWEQDMVNTTDI---DLIIALGHSPVRDDDE------------W----K--------SLHAEIRKVHPNTPIQVIGG 264 (602)
T ss_pred hccchHHHHhhccCc---cEEEEecccccccchh------------h----h--------hHHHHHhhhCCCCceEEECc
Confidence 377899888887322 3478888988753221 1 0 124556667788887 9999
Q ss_pred cCCCCCccc
Q 016360 326 HNHGLDWCC 334 (390)
Q Consensus 326 H~H~nd~~~ 334 (390)
|.|.+++..
T Consensus 265 Hshird~a~ 273 (602)
T KOG4419|consen 265 HSHIRDFAV 273 (602)
T ss_pred hhhhhhhhh
Confidence 999998765
No 116
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.29 E-value=0.034 Score=53.65 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
+.+++|+|-.. ....+.+. .+.....+-.++.||++|.+... .+.+..++..-....-.++.+.
T Consensus 54 ~~ViGDIHG~~-----------~~L~~l~~-~~~~~~~~~~lfLGDyVDRG~~s----~evl~ll~~lk~~~p~~v~llr 117 (294)
T PTZ00244 54 VRVCGDTHGQY-----------YDLLRIFE-KCGFPPYSNYLFLGDYVDRGKHS----VETITLQFCYKIVYPENFFLLR 117 (294)
T ss_pred ceeeccCCCCH-----------HHHHHHHH-HcCCCCcccEEEeeeEecCCCCH----HHHHHHHHHHhhccCCeEEEEe
Confidence 77899999743 11222222 22223345788999999988743 2222111111011234689999
Q ss_pred cCCCCCC
Q 016360 139 GNHDDAP 145 (390)
Q Consensus 139 GNHD~~~ 145 (390)
||||...
T Consensus 118 GNHE~~~ 124 (294)
T PTZ00244 118 GNHECAS 124 (294)
T ss_pred cccchHh
Confidence 9999864
No 117
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.20 E-value=0.071 Score=51.95 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=27.5
Q ss_pred EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 98 FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 98 ~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
-+|+.||++|.+... .+.+..++......+--++.+.||||...
T Consensus 85 ~~vfLGDyVDRGp~s----~evl~ll~~lk~~~p~~v~lLRGNHE~~~ 128 (311)
T cd07419 85 DYLFLGDYVDRGSNS----LETICLLLALKVKYPNQIHLIRGNHEDRD 128 (311)
T ss_pred eEEEECCccCCCCCh----HHHHHHHHHhhhcCCCcEEEeccccchHH
Confidence 478999999988642 22222222211223446899999999864
No 118
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.55 E-value=0.093 Score=45.51 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHHHhh-cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCC
Q 016360 83 SVKVMSTVLDH-ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHD 142 (390)
Q Consensus 83 ~~~~i~~~l~~-~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD 142 (390)
.++.+.++.++ .+.|++|+.||+....... ..+..+...-....+|.|++-|||.
T Consensus 13 ~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-----~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 13 LFEKVNTINKKKGPFDALLCVGDFFGDDEDD-----EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHhcccCCeeEEEEecCccCCccch-----hhHHHHhcCCccCCCCEEEECCCCC
Confidence 44566665544 4679999999998755431 2244556665678899999999996
No 119
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=94.23 E-value=0.62 Score=47.24 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=53.0
Q ss_pred eEEEEEEEeCCCCC---------C----------CCCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhcc-CCC-
Q 016360 226 AVAYMYFLDSGGGS---------Y----------PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKV-APR- 284 (390)
Q Consensus 226 ~~~~l~~lDS~~g~---------~----------~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~-~~~- 284 (390)
+.+.+.+||++.+. . ..-+.++|.+||++.|...+. ...+|-.-.|+-...-. .+.
T Consensus 300 ~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Ska---tWnVia~q~~~~~~~~d~~~a~ 376 (522)
T COG3540 300 PLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKA---TWNVIAQQMPLGLVVFDGSPAT 376 (522)
T ss_pred cccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcch---hhhhhhhhcceeEeecCCCccc
Confidence 45778899986432 1 123889999999999998654 23345455555321100 000
Q ss_pred CCCCCCccCccccccchhhhhhhHHHHHHHhCCCce--EEEeCcCCCC
Q 016360 285 FGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVK--AVFVGHNHGL 330 (390)
Q Consensus 285 ~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~--~vf~GH~H~n 330 (390)
.+. .....+| + ..+..+.++++.+++. ++. ++++|-.|..
T Consensus 377 ~~~-~a~~D~w--d--Gy~~~RerLl~fi~~~-~~~N~V~LtgDvH~~ 418 (522)
T COG3540 377 EGQ-EANADGW--D--GYPAGRERLLRFIADR-KIRNTVVLTGDVHYS 418 (522)
T ss_pred cCc-cccccCc--C--CCcccHHHHHHHHHhc-CCCCcEEEechhHHH
Confidence 000 0001111 1 1222234799999764 333 8999999973
No 120
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=94.08 E-value=0.43 Score=45.70 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=52.8
Q ss_pred eeecCCCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhc--------CCCEEEEeCccCCCCc----hhhhhH
Q 016360 49 RMRAAGGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE--------TPDFVIYLGDVITANN----MAVANA 116 (390)
Q Consensus 49 ~~~~~~~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~--------~pD~Vv~tGDl~~~~~----~~~~~~ 116 (390)
-.++.+...+|+++||+|+.. .++++.+..+++.. .|-.+|+.|+.+...- ......
T Consensus 20 ~~~~~~~~~~~VilSDV~LD~-----------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~y 88 (291)
T PTZ00235 20 IVRKNDKRHNWIIMHDVYLDS-----------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVY 88 (291)
T ss_pred EEecCCCceEEEEEEeeccCC-----------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHH
Confidence 334425678999999999954 34666666666532 3889999999987531 111111
Q ss_pred HHHHHHHHh-hhH-----hCCCCEEEEccCCCCC
Q 016360 117 SLYWDQAIS-PTR-----VRGIPWASIFGNHDDA 144 (390)
Q Consensus 117 ~~~~~~~~~-~l~-----~~~iP~~~v~GNHD~~ 144 (390)
++.++.+.. .+. .....+..|||-.|-.
T Consensus 89 k~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 89 IKGFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 233444332 121 2356799999999974
No 121
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=92.56 E-value=0.37 Score=45.70 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCceEEEEccCchhhh-ccCCCC--CCCCCccCccccccchhhhh-hhHHHHHHHhCCCceE
Q 016360 246 SAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYK-KVAPRF--GVHKPCVGSINKESVAAQEA-EMGIMKILVKRTSVKA 321 (390)
Q Consensus 246 ~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~-~~~~~~--~~~~~~~g~~n~e~v~~~~~-~~~l~~~L~~~~~V~~ 321 (390)
..-+-||+..|.....+. .|+++|.|.--..+. +.|... -+++. |+ .+.--.++. ...++..|.. .||..
T Consensus 252 ~sslpwlk~dl~~~aadg-rpv~LfqhyGwdtfsteawdpAsrT~Dd~--Gs--gaphww~a~er~all~~lqG-YNvvg 325 (392)
T COG5555 252 NSSLPWLKVDLIYSAADG-RPVYLFQHYGWDTFSTEAWDPASRTLDDT--GS--GAPHWWPAPERGALLFFLQG-YNVVG 325 (392)
T ss_pred cccCcceeccceeeccCC-CceeehhhhCccceeccccCchhcccccC--CC--CCCCCCCCCCcchHHHhhcC-ceeEE
Confidence 456889999999876654 699999998654332 223211 01111 11 011111111 2357777765 59999
Q ss_pred EEeCcCCCCCcccCCCCeeE
Q 016360 322 VFVGHNHGLDWCCPYQNLWL 341 (390)
Q Consensus 322 vf~GH~H~nd~~~~~~gi~~ 341 (390)
+|.||-|.-....+..++.+
T Consensus 326 ~fhGhkhd~~mayrr~~ld~ 345 (392)
T COG5555 326 TFHGHKHDFNMAYRRYDLDA 345 (392)
T ss_pred eccccccccceeeeecCccc
Confidence 99999998654444444443
No 122
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=90.92 E-value=0.43 Score=38.50 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCceEEEeCcCCCCCcc
Q 016360 308 GIMKILVKRTSVKAVFVGHNHGLDWC 333 (390)
Q Consensus 308 ~l~~~L~~~~~V~~vf~GH~H~nd~~ 333 (390)
.+..++. ..++..+|+||.|.+...
T Consensus 94 ~~~~~~~-~~~~~~~~~GH~H~~~~~ 118 (131)
T cd00838 94 ALLELLE-KYGVDLVLSGHTHVYERR 118 (131)
T ss_pred HHHHHHH-HhCCCEEEeCCeeccccc
Confidence 3445554 458899999999997643
No 123
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=90.55 E-value=8.4 Score=35.15 Aligned_cols=53 Identities=25% Similarity=0.420 Sum_probs=33.1
Q ss_pred hhcCCCEEEEeCccCCCCchh--------------------hhhHHHHHHH-----HHhhhHhCCCCEEEEccCCCCCC
Q 016360 92 DHETPDFVIYLGDVITANNMA--------------------VANASLYWDQ-----AISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 92 ~~~~pD~Vv~tGDl~~~~~~~--------------------~~~~~~~~~~-----~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.+.+||++|.+||.+...... .+.....+.. .++.+. ..+|++.+.-+||+..
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~-~~~p~~~iwDDHDi~~ 103 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLL-AQVPTIGIWDDHDIGD 103 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHh-hcCCEEEecccccccc
Confidence 467999999999999765311 0111111111 122222 4689999999999985
No 124
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=89.33 E-value=6.1 Score=36.57 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeCcC
Q 016360 248 QAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHN 327 (390)
Q Consensus 248 Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~GH~ 327 (390)
..+-+++.++++++.. .-+||.+|-... +.. . . ..+ ...+.+.+.+ .++.+|+.||.
T Consensus 160 ~~~~~~~~i~~lr~~~-D~vIv~~H~G~e-~~~--------~---p--~~~-------~~~la~~l~~-~G~D~IiG~H~ 216 (239)
T cd07381 160 DLERIAADIAEAKKKA-DIVIVSLHWGVE-YSY--------Y---P--TPE-------QRELARALID-AGADLVIGHHP 216 (239)
T ss_pred CHHHHHHHHHHHhhcC-CEEEEEecCccc-CCC--------C---C--CHH-------HHHHHHHHHH-CCCCEEEcCCC
Confidence 3455666666665432 347888885431 110 0 0 001 1235555554 48999999999
Q ss_pred CCCCcccCCCCeeEeec
Q 016360 328 HGLDWCCPYQNLWLCFA 344 (390)
Q Consensus 328 H~nd~~~~~~gi~~~~~ 344 (390)
|...-+..++|.++.|+
T Consensus 217 Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 217 HVLQGIEIYKGKLIFYS 233 (239)
T ss_pred CcCCCeEEECCEEEEEc
Confidence 99764556778777775
No 125
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=82.63 E-value=19 Score=33.34 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeec
Q 016360 308 GIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFA 344 (390)
Q Consensus 308 ~l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~ 344 (390)
.+.+.|.+ .++.+|+.||.|...-+..++|.++.|+
T Consensus 196 ~~A~~l~~-~G~DvIiG~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 196 ELAHALID-AGADVVIGHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred HHHHHHHH-cCCCEEEcCCCCcCCceEEECCEEEEEc
Confidence 35555655 4899999999998765556678777665
No 126
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=82.14 E-value=46 Score=31.40 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 85 KVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 85 ~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
+.+-++.++.++||||.+|.-..++.-... +..+.|.+.++-++ +.|||=+..
T Consensus 17 ~~Lp~L~~~~~~DfVIaNgENaa~G~Git~-------~~~~~L~~~GvDvi-T~GNH~wdk 69 (253)
T PF13277_consen 17 EHLPELKEEYGIDFVIANGENAAGGFGITP-------KIAEELFKAGVDVI-TMGNHIWDK 69 (253)
T ss_dssp HHHHHHGG--G-SEEEEE-TTTTTTSS--H-------HHHHHHHHHT-SEE-E--TTTTSS
T ss_pred HHHHHHHhhcCCCEEEECCcccCCCCCCCH-------HHHHHHHhcCCCEE-ecCcccccC
Confidence 344455566799999999999986653221 34445556778764 789997764
No 127
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=79.89 E-value=2.2 Score=38.52 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=23.3
Q ss_pred HHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecC
Q 016360 311 KILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 345 (390)
Q Consensus 311 ~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~ 345 (390)
..+.+..++..++|||+|... ....+++.++..+
T Consensus 182 ~~~~~~~~~~~~i~GH~H~~~-~~~~~~~~~~n~G 215 (217)
T cd07398 182 ARLARRKGVDGVICGHTHRPA-LHELDGKLYINLG 215 (217)
T ss_pred HHHHHhcCCCEEEECCCCCCC-eEEECCEEEEECC
Confidence 333345699999999999976 4455666655544
No 128
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=77.32 E-value=3.1 Score=40.91 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCC-EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE
Q 016360 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPD-FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS 136 (390)
Q Consensus 58 ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD-~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 136 (390)
-|.++.|+|-.. .+.++.+.... ...|+ --|++||.+|.+....+- +-.++..=...+--|+.
T Consensus 60 PV~i~GDiHGq~-----------~DLlrlf~~~g-~~pp~~~ylFLGDYVDRG~~slE~----i~LL~a~Ki~yp~~~~l 123 (331)
T KOG0374|consen 60 PVKIVGDIHGQF-----------GDLLRLFDLLG-SFPPDQNYVFLGDYVDRGKQSLET----ICLLFALKIKYPENVFL 123 (331)
T ss_pred CEEEEccCcCCH-----------HHHHHHHHhcC-CCCCcccEEEecccccCCccceEE----eehhhhhhhhCCceEEE
Confidence 477899999853 23444444322 12354 589999999988743211 11111111235566999
Q ss_pred EccCCCCCC
Q 016360 137 IFGNHDDAP 145 (390)
Q Consensus 137 v~GNHD~~~ 145 (390)
+.|||+...
T Consensus 124 LRGNHE~~~ 132 (331)
T KOG0374|consen 124 LRGNHECAS 132 (331)
T ss_pred ecccccccc
Confidence 999999985
No 129
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=76.66 E-value=9.1 Score=35.81 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHH-HHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSV-KVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~-~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
+|++.+.|+=-.. ..+.+ ..+-.+.++.++||||..|--+.++.-... +..+.+.+.++-+
T Consensus 1 mriLfiGDvvGk~----------Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~-------k~y~~l~~~G~dv- 62 (266)
T COG1692 1 MRILFIGDVVGKP----------GRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITE-------KIYKELLEAGADV- 62 (266)
T ss_pred CeEEEEecccCcc----------hHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCH-------HHHHHHHHhCCCE-
Confidence 5788898884432 23333 344444456799999999999886653221 4445556678775
Q ss_pred EEccCCCCCC
Q 016360 136 SIFGNHDDAP 145 (390)
Q Consensus 136 ~v~GNHD~~~ 145 (390)
++.|||=+..
T Consensus 63 iT~GNH~wd~ 72 (266)
T COG1692 63 ITLGNHTWDQ 72 (266)
T ss_pred Eecccccccc
Confidence 5789997764
No 130
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=76.62 E-value=5.3 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHhCCCceEEEeCcCCCCCc
Q 016360 309 IMKILVKRTSVKAVFVGHNHGLDW 332 (390)
Q Consensus 309 l~~~L~~~~~V~~vf~GH~H~nd~ 332 (390)
+.+.+.+ .++..++|||+|.+..
T Consensus 177 ~~~~~~~-~~~~~~i~GHtH~~~~ 199 (231)
T TIGR01854 177 VAAVMRR-YGVDRLIHGHTHRPAI 199 (231)
T ss_pred HHHHHHH-cCCCEEEECCccCcce
Confidence 4445555 4888999999999763
No 131
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=67.59 E-value=9.7 Score=36.22 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCE
Q 016360 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPW 134 (390)
Q Consensus 55 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 134 (390)
+..|++.+||+|--... +.+-..-|+.+.+||.+.-+.. +.+.++.+.+-++...+
T Consensus 60 ~~~r~VcisdtH~~~~~------------------i~~~p~gDvlihagdfT~~g~~------~ev~~fn~~~gslph~y 115 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD------------------INDIPDGDVLIHAGDFTNLGLP------EEVIKFNEWLGSLPHEY 115 (305)
T ss_pred CceEEEEecCcccccCc------------------cccCCCCceEEeccCCccccCH------HHHHhhhHHhccCccee
Confidence 45899999999986531 0123456999999999985542 11234445555554433
Q ss_pred -EEEccCCCCC
Q 016360 135 -ASIFGNHDDA 144 (390)
Q Consensus 135 -~~v~GNHD~~ 144 (390)
.+|.|||+..
T Consensus 116 KIVIaGNHELt 126 (305)
T KOG3947|consen 116 KIVIAGNHELT 126 (305)
T ss_pred eEEEeecccee
Confidence 6799999986
No 132
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=65.14 E-value=8.5 Score=35.37 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=40.8
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCE-EEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDF-VIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~-Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
+-+..|+|-.. .+.++.+..- -.=||- -|+.||.+|.+--. .+.+..++-...+.+..+..+
T Consensus 48 VTvCGDIHGQF-----------yDL~eLFrtg--G~vP~tnYiFmGDfVDRGyyS----LEtfT~l~~LkaryP~~ITLl 110 (306)
T KOG0373|consen 48 VTVCGDIHGQF-----------YDLLELFRTG--GQVPDTNYIFMGDFVDRGYYS----LETFTLLLLLKARYPAKITLL 110 (306)
T ss_pred eeEeeccchhH-----------HHHHHHHHhc--CCCCCcceEEecccccccccc----HHHHHHHHHHhhcCCceeEEe
Confidence 44578888632 2233333321 123543 68899999987642 222333333334556668899
Q ss_pred ccCCCCCC
Q 016360 138 FGNHDDAP 145 (390)
Q Consensus 138 ~GNHD~~~ 145 (390)
.|||+.+.
T Consensus 111 RGNHEsRq 118 (306)
T KOG0373|consen 111 RGNHESRQ 118 (306)
T ss_pred eccchhhh
Confidence 99999874
No 133
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=62.89 E-value=7.8 Score=40.92 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDD 143 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~ 143 (390)
.+..+..+|+..-.|-+-+.||+.|.++.+ +.+++.|.. ---+-+-.||||.
T Consensus 172 fI~al~~lIqrL~VDhLHIvGDIyDRGp~p--------d~ImD~Lm~-~hsvDIQWGNHDI 223 (640)
T PF06874_consen 172 FIIALSELIQRLAVDHLHIVGDIYDRGPRP--------DKIMDRLMN-YHSVDIQWGNHDI 223 (640)
T ss_pred HHHHHHHHHHHHhhhheeecccccCCCCCh--------hHHHHHHhc-CCCccccccchHH
Confidence 345566677778899999999999999864 244444432 2346677899996
No 134
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=57.10 E-value=1.6e+02 Score=27.22 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceEEEeC
Q 016360 246 SAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVG 325 (390)
Q Consensus 246 ~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~vf~G 325 (390)
..+++.+++.+++++++. .-+||++|--.. +.. .+ ..+ -.++...|.+. ++.+|+.+
T Consensus 167 ~~~~~~i~~~i~~~r~~~-D~vIv~~HwG~e-~~~--------~p-----~~~-------q~~~a~~lida-GaDiIiG~ 223 (250)
T PF09587_consen 167 RPGIERIKEDIREARKKA-DVVIVSLHWGIE-YEN--------YP-----TPE-------QRELARALIDA-GADIIIGH 223 (250)
T ss_pred cchHHHHHHHHHHHhcCC-CEEEEEeccCCC-CCC--------CC-----CHH-------HHHHHHHHHHc-CCCEEEeC
Confidence 345688999999887533 358999995321 110 00 001 12466677664 79999999
Q ss_pred cCCCCCcccCCCCeeEeecC
Q 016360 326 HNHGLDWCCPYQNLWLCFAR 345 (390)
Q Consensus 326 H~H~nd~~~~~~gi~~~~~~ 345 (390)
|-|.-.-...++|-++.|+-
T Consensus 224 HpHv~q~~E~y~~~~I~YSL 243 (250)
T PF09587_consen 224 HPHVIQPVEIYKGKPIFYSL 243 (250)
T ss_pred CCCcccceEEECCEEEEEeC
Confidence 99997655566777777653
No 135
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=56.59 E-value=15 Score=34.50 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=27.4
Q ss_pred CEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 97 DFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 97 D~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.--++.||.+|.+-.. -+.+..++..-...+-.+..+.|||+.+.
T Consensus 71 t~YLFLGDyVDRG~~S----vEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 71 TNYLFLGDYVDRGYYS----VETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred CceEeecchhccccch----HHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 3468999999987632 22221111111234455899999999875
No 136
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.11 E-value=30 Score=35.33 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=47.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcC-CCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHET-PDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
.||+++.|.--. -...++.+..+.++.. .|++++.|+++...... ..|.++..-.....||+|
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~-----~e~~~ykng~~~vPiptY 69 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQN-----AEVEKYKNGTKKVPIPTY 69 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccch-----hHHHHHhcCCccCceeEE
Confidence 578888886332 2345677777777666 59999999999863321 123355555567788999
Q ss_pred EEccCCC
Q 016360 136 SIFGNHD 142 (390)
Q Consensus 136 ~v~GNHD 142 (390)
+.-+|--
T Consensus 70 ~~g~~~~ 76 (528)
T KOG2476|consen 70 FLGDNAN 76 (528)
T ss_pred EecCCCC
Confidence 9888753
No 137
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=55.45 E-value=28 Score=34.32 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGN 140 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GN 140 (390)
.+..+..++++.+||+||+.||-... +.-.+.. ...+||+..+-|=
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~-----------la~alaA-~~~~ipv~HieaG 100 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEA-----------LAAALAA-FYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHH-----------HHHHHHH-HHTT-EEEEES--
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchH-----------HHHHHHH-HHhCCCEEEecCC
Confidence 45667777888999999999995211 1112222 3478999988664
No 138
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=54.98 E-value=67 Score=32.72 Aligned_cols=79 Identities=8% Similarity=0.128 Sum_probs=48.9
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhh---cCCCEEEEeCccCCCCchhh--hhHHHHHHHHHhhhH--
Q 016360 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH---ETPDFVIYLGDVITANNMAV--ANASLYWDQAISPTR-- 128 (390)
Q Consensus 56 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~---~~pD~Vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~-- 128 (390)
.-+|+.+||+|+.. .+.++.+..+++. ..|-++|++|-.+....... .+.+..++.+...+.
T Consensus 282 d~~fVfLSdV~LD~-----------~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~ 350 (525)
T KOG3818|consen 282 DTSFVFLSDVFLDD-----------KKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCF 350 (525)
T ss_pred CceEEEEehhcccc-----------HHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhcccc
Confidence 46788889999953 5566677776654 46889999999986543211 111222233322220
Q ss_pred ---hCCCCEEEEccCCCCCC
Q 016360 129 ---VRGIPWASIFGNHDDAP 145 (390)
Q Consensus 129 ---~~~iP~~~v~GNHD~~~ 145 (390)
--+..++.|||=-|-..
T Consensus 351 ~~~~ekT~fIFVPGP~Dp~~ 370 (525)
T KOG3818|consen 351 RKDYEKTQFIFVPGPNDPWV 370 (525)
T ss_pred ccccccceEEEecCCCCCCc
Confidence 02356899999988754
No 139
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=53.55 E-value=29 Score=32.81 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=41.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCE-EEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC----
Q 016360 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDF-VIYLGDVITANNMAVANASLYWDQAISPTRVRG---- 131 (390)
Q Consensus 57 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~-Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~---- 131 (390)
.-..+..|+|-.. .+.++.+ .+--..||. .++.||.+|.+.... +.++.+...+
T Consensus 60 ~pvtvcGDvHGqf-----------~dl~ELf--kiGG~~pdtnylfmGDyvdrGy~Sv--------etVS~lva~Kvry~ 118 (319)
T KOG0371|consen 60 CPVTVCGDVHGQF-----------HDLIELF--KIGGLAPDTNYLFMGDYVDRGYYSV--------ETVSLLVALKVRYP 118 (319)
T ss_pred cceEEecCcchhH-----------HHHHHHH--HccCCCCCcceeeeeeecccccchH--------HHHHHHHHhhcccc
Confidence 3467789998743 2223332 122356664 788999999876421 3333333333
Q ss_pred CCEEEEccCCCCCC
Q 016360 132 IPWASIFGNHDDAP 145 (390)
Q Consensus 132 iP~~~v~GNHD~~~ 145 (390)
-.+-+++|||+...
T Consensus 119 ~rvtilrGNHEsrq 132 (319)
T KOG0371|consen 119 DRVTILRGNHESRQ 132 (319)
T ss_pred ceeEEecCchHHHH
Confidence 45889999999763
No 140
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.53 E-value=28 Score=34.84 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE-ccCCC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI-FGNHD 142 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v-~GNHD 142 (390)
++..+..++.+++||+|++-||-..... -.+.. ...+||+..| .|+--
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t~lA-----------~alaa-~~~~IpV~HvEAGlRt 128 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNTTLA-----------GALAA-FYLKIPVGHVEAGLRT 128 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcchHHH-----------HHHHH-HHhCCceEEEeccccc
Confidence 4567778888999999999999643322 11111 2358999875 55543
No 141
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=42.75 E-value=25 Score=32.14 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=19.2
Q ss_pred CCceEEEeCcCCCCCcccCCCCeeEeecCCccCC
Q 016360 317 TSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG 350 (390)
Q Consensus 317 ~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~ 350 (390)
.+...|++||+|... ....++. ++..+++.|+
T Consensus 178 ~~~~~vv~GHTh~~~-~~~~~~~-i~IDtGs~~g 209 (218)
T PRK09968 178 NGADYFIFGHMMFDN-IQTFANQ-IYIDTGSPKS 209 (218)
T ss_pred CCCCEEEECCCCcCc-ceeECCE-EEEECCCCCC
Confidence 456789999999865 3333443 3444444554
No 142
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=42.69 E-value=30 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCC
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 144 (390)
.+...++..-.|-+=+.||+.|.++.++ .++..|.+. .-+-+-.||||.-
T Consensus 181 ala~~iqrLvVDhLHiVGDIyDRGP~pd--------~Imd~L~~y-hsvDiQWGNHDil 230 (648)
T COG3855 181 ALAYLIQRLVVDHLHIVGDIYDRGPYPD--------KIMDTLINY-HSVDIQWGNHDIL 230 (648)
T ss_pred HHHHHHHHHhhhheeeecccccCCCCch--------HHHHHHhhc-ccccccccCcceE
Confidence 3444556678899999999999998652 445544432 2244567999974
No 143
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.82 E-value=1.4e+02 Score=25.88 Aligned_cols=70 Identities=16% Similarity=0.371 Sum_probs=42.6
Q ss_pred HHHHHHhCCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCCCC----C-CCCeeEEEEEEcCCCeeeEE-EEcCCCcE
Q 016360 309 IMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG----N-WPRGARILEIMEQPFSLKSW-IRMEDGSV 382 (390)
Q Consensus 309 l~~~L~~~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~----~-~~~G~Riiel~~~~~~~~tw-~r~~~g~~ 382 (390)
.+.+|.+.-+|...+.||+|.-+ ....+|-- ...|++.-|++. + ..+.+-++.+. +....++ .|+=||+|
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~-Aye~eg~f-fvnPGSaTGAfn~~~t~~~~PSFvLmDiq--g~~~v~YvY~lidgeV 173 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFE-AYEHEGKF-FVNPGSATGAFNVSDTDIIVPSFVLMDIQ--GSTVVTYVYRLIDGEV 173 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEE-EEEeCCcE-EeCCCcccCCCcccccCCCCCceEEEEec--CCEEEEEEeeeeCCcE
Confidence 56777777799999999999865 33445543 333433334443 1 33555555544 4466666 56777764
No 144
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=40.05 E-value=74 Score=31.52 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE-ccCC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI-FGNH 141 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v-~GNH 141 (390)
.+..+.+++.+.+||+|+..||-...-. -.+.. ..++||+..+ -|++
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la-----------~alaA-~~~~IPv~HveaG~r 128 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLA-----------AAIAA-ALLNIPIAHIHGGEV 128 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHH-----------HHHHH-HHhCCcEEEEECCcc
Confidence 3466777888899999999999633221 11222 3468999954 4555
No 145
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.04 E-value=65 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=41.4
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
+++++|+|+-.... + .-..+.+++-.-+..-|+.+|.++.... . +++ +...--+.+|.
T Consensus 3 vL~lgD~HiP~Ra~-------~--Lp~KFkklLvPgki~hilctGNlcs~e~------~----dyl---k~l~~dvhiVr 60 (183)
T KOG3325|consen 3 VLVLGDLHIPHRAN-------D--LPAKFKKLLVPGKIQHILCTGNLCSKES------Y----DYL---KTLSSDVHIVR 60 (183)
T ss_pred EEEeccccCCcccc-------c--cCHHHHhccCCCceeEEEEeCCcchHHH------H----HHH---HhhCCCcEEEe
Confidence 67899999965421 1 1134556665567889999999754322 1 222 23344588899
Q ss_pred cCCCCCC
Q 016360 139 GNHDDAP 145 (390)
Q Consensus 139 GNHD~~~ 145 (390)
|.-|...
T Consensus 61 GeFD~~~ 67 (183)
T KOG3325|consen 61 GEFDENL 67 (183)
T ss_pred cccCccc
Confidence 9988764
No 146
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=34.29 E-value=1e+02 Score=28.08 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHh-CCCCEEEEccCCCCCC
Q 016360 84 VKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRV-RGIPWASIFGNHDDAP 145 (390)
Q Consensus 84 ~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~-~~iP~~~v~GNHD~~~ 145 (390)
+..+...+.+...|++++.|=. +-.. +.+.++++.+++ .++|++.-|||++.-.
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~--gvt~------~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSL--GIVE------SNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcC--CCCH------HHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 3334445556678999999863 1111 123456666666 6899999999998653
No 147
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=33.07 E-value=49 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=16.6
Q ss_pred HHHHHHhCCCceEEEeCcCCCCCc
Q 016360 309 IMKILVKRTSVKAVFVGHNHGLDW 332 (390)
Q Consensus 309 l~~~L~~~~~V~~vf~GH~H~nd~ 332 (390)
+.+.|.. .+.+.+++||+|....
T Consensus 159 ~~~~l~~-~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 159 LDKVLER-LGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHH-cCCCeEEEcCeeeecC
Confidence 4445544 4789999999998663
No 148
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=31.82 E-value=26 Score=35.50 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=28.8
Q ss_pred EEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 99 VIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 99 Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
-|++||.+|.+... .+.+.-++..+.-.+..++.-.|||+...
T Consensus 196 YvFNGDFVDRGk~s----iEvLmiL~a~~lv~P~~~~LNRGNHED~m 238 (631)
T KOG0377|consen 196 YVFNGDFVDRGKRS----IEVLMILFALYLVYPNAVHLNRGNHEDHM 238 (631)
T ss_pred eeecCchhhccccc----hhhHHHHHHHHhcCchhhhccCCchHHHH
Confidence 57899999987642 22232334444455667899999999753
No 149
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.03 E-value=1.3e+02 Score=29.46 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHD 142 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD 142 (390)
.+..+.+.+++.+||+|+..| . .+... .+.......++|+++..+|+.
T Consensus 73 ~~~~~~~~l~~~kPdivi~~~-~-~~~~~----------~~a~~a~~~~ip~i~~~~~~~ 120 (380)
T PRK00025 73 IRRRLKRRLLAEPPDVFIGID-A-PDFNL----------RLEKKLRKAGIPTIHYVSPSV 120 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-C-CCCCH----------HHHHHHHHCCCCEEEEeCCch
Confidence 344566677788999999987 3 22221 112222346899988877764
No 150
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=30.32 E-value=1.2e+02 Score=30.27 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
.+.+.+++.+||+||.+| - -+.+. .+....+..++|+++.
T Consensus 80 ~~~~~l~~~kPd~vi~~g-~-~~~~~----------~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGID-A-PDFNL----------TKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeC-C-CCccH----------HHHHHHhhCCCCEEEE
Confidence 344556678999999999 3 33331 1222335578998864
No 151
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=30.00 E-value=1.8e+02 Score=24.78 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCEEEEeC---ccCCCCchhhhhHHHHHHHHHhhhHhC--CCCEEEE
Q 016360 83 SVKVMSTVLDHETPDFVIYLG---DVITANNMAVANASLYWDQAISPTRVR--GIPWASI 137 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~--~iP~~~v 137 (390)
.+..+.+.+...+||.|++.. |+..+... ++..+.+.++++.+++. +.+++++
T Consensus 38 ~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~--~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 38 CLHYFDRLVLPYQPRRVVLYAGDNDLASGRTP--EEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHHhhhccCCCCEEEEEEecCcccCCCCH--HHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 344555555567999998855 87655432 22334556677766553 4666654
No 152
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=29.83 E-value=51 Score=28.92 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.7
Q ss_pred CCceEEEeCcCCCC
Q 016360 317 TSVKAVFVGHNHGL 330 (390)
Q Consensus 317 ~~V~~vf~GH~H~n 330 (390)
.++.++||||+|..
T Consensus 133 ~~~~~~lsGH~H~~ 146 (171)
T cd07384 133 IKPVLILSGHDHDQ 146 (171)
T ss_pred cCceEEEeCcccCC
Confidence 36679999999985
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.76 E-value=1.4e+02 Score=24.09 Aligned_cols=53 Identities=13% Similarity=0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCC--CCEEEEccCCCCC
Q 016360 84 VKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRG--IPWASIFGNHDDA 144 (390)
Q Consensus 84 ~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~--iP~~~v~GNHD~~ 144 (390)
.+.+.+.+.+.+||+|.++.=...... ...++.+.+++.+ -+..++-|+|-..
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~~~~~~~--------~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTHMT--------LMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHcCCCEEEEeccccccHH--------HHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 345666677889999999876443322 1234555555543 3567889998543
No 154
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=29.01 E-value=1.5e+02 Score=29.82 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCceEEEEccCchhhhccCCCCCCCCCccCccccccchhhhhhhHHHHHHHhCCCceE
Q 016360 242 EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKA 321 (390)
Q Consensus 242 g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H~P~~~~~~~~~~~~~~~~~~g~~n~e~v~~~~~~~~l~~~L~~~~~V~~ 321 (390)
|.++++|.+=|.+.+++++.......++|.-+|+.. + ..+.+ |.+.+
T Consensus 295 G~L~~~q~~~~~~l~~~~~~~~p~L~l~~qni~~~~--------------------~----------~~~~l---pa~i~ 341 (395)
T PRK15367 295 GVLDESHQRILQETLAALKKKDPALSLIYQDIAPSH--------------------D----------ESKYL---PAPVA 341 (395)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCceEEEcCCCCCc--------------------c----------hhhcC---ccceE
Confidence 569999999999999998653212455555555421 0 12233 34556
Q ss_pred EEeCcCCCCCcccCCCCeeEeecCCccCCCCCCCCCeeEEEEEEcCCCee
Q 016360 322 VFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQPFSL 371 (390)
Q Consensus 322 vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~y~~~~~G~Riiel~~~~~~~ 371 (390)
=+.|-.|. -|...-+|..+-.|. .++.||||+-+..++-++
T Consensus 342 g~gGn~~~-pyV~L~Ng~RL~~Gs--------~L~nGyrV~~I~~~gI~L 382 (395)
T PRK15367 342 GFVQSRHG-NYLLLTNKERLRVGA--------LLPNGGEIVHLSADVVTI 382 (395)
T ss_pred EeecCCCC-CeEEeeCCcCccCCC--------CCCCceEEEEEcCCceEE
Confidence 66677675 455556776655442 467999999999876444
No 155
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.02 E-value=55 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCEEEEeC
Q 016360 83 SVKVMSTVLDHETPDFVIYLG 103 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG 103 (390)
.-+.+..++++.+||.+|+||
T Consensus 141 qp~~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITG 161 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeC
Confidence 345778888899999999999
No 156
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.63 E-value=2.7e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCCEEEEeC---ccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 83 SVKVMSTVLDHETPDFVIYLG---DVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
.++.+.+.+...+||.|++.. |...+.. ..+..+.++++++.+++.+.+++++
T Consensus 47 ~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~--~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 47 MLVRFYEDVIALKPAVVIIMGGTNDIIVNTS--LEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCccccCCC--HHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 445555555667999887765 6654432 2233455677888877777776665
No 157
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.43 E-value=57 Score=31.21 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCEEEEeC
Q 016360 83 SVKVMSTVLDHETPDFVIYLG 103 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG 103 (390)
.-+.+.+++.+.+||.||+||
T Consensus 142 qp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeC
Confidence 446778888899999999999
No 158
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.57 E-value=2.4e+02 Score=21.87 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCC
Q 016360 87 MSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDD 143 (390)
Q Consensus 87 i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~ 143 (390)
....++.....+|++.+|.-.. ....+.....+.++|+.+++==.|.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~----------vv~~l~~lceek~Ip~v~V~s~~~L 67 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVY----------LMTRVLSQINQKNIPVSFFKSKHAL 67 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHH----------HHHHHHHHHHHcCCCEEEECCHHHH
Confidence 3445666778999999997311 1235555567789999998644444
No 159
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=25.35 E-value=1.1e+02 Score=30.41 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=29.0
Q ss_pred cCCCEEEEeCccCCCCchhhhh------HHHHHHHHHhhh---HhCCCCEEEEccCCCCCC
Q 016360 94 ETPDFVIYLGDVITANNMAVAN------ASLYWDQAISPT---RVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 94 ~~pD~Vv~tGDl~~~~~~~~~~------~~~~~~~~~~~l---~~~~iP~~~v~GNHD~~~ 145 (390)
.+.|+++++||.=.-....+-+ ....+..+.+.. ...++|.++|-|||+...
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHH
Confidence 4889999999975322211100 011112222211 335678889999999753
No 160
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=25.29 E-value=1.5e+02 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHhhcCCCEEEEeCcc-CCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 90 VLDHETPDFVIYLGDV-ITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 90 ~l~~~~pD~Vv~tGDl-~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
.+.+..-|++++.|=. +... ..+++++.+++..+|++.-|||++.-.
T Consensus 22 ~~~~~gtdai~vGGS~~vt~~---------~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 22 AAAESGTDAILIGGSQGVTYE---------KTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHHhcCCCEEEEcCCCcccHH---------HHHHHHHHHhccCCCEEEeCCCccccC
Confidence 4455678999999965 3322 134667777778899999999998753
No 161
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.97 E-value=2.9e+02 Score=25.95 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
.....+++.+|||+|+.+=-----... ...+.+...++|..++-
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~---------~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPK---------KAREILKAAGIPCIVIG 94 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCch---------HHHHHHHhcCCCEEEEc
Confidence 344555778999999987654322211 33445567899998873
No 162
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=24.28 E-value=1.2e+02 Score=27.39 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=17.4
Q ss_pred cCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEE
Q 016360 94 ETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWA 135 (390)
Q Consensus 94 ~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 135 (390)
..||+||+++ .... .+++.+....+||+.
T Consensus 107 ~~Pdlliv~d----p~~~---------~~Av~EA~~l~IP~I 135 (196)
T TIGR01012 107 REPEVVVVTD----PRAD---------HQALKEASEVGIPIV 135 (196)
T ss_pred CCCCEEEEEC----Cccc---------cHHHHHHHHcCCCEE
Confidence 4699999862 1111 134455567899973
No 163
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=24.11 E-value=2.7e+02 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHhhc---CCCEEEEeC---ccCCCCc---hhhhhHHHHHHHHHhhhHh--CCCCEEEE
Q 016360 84 VKVMSTVLDHE---TPDFVIYLG---DVITANN---MAVANASLYWDQAISPTRV--RGIPWASI 137 (390)
Q Consensus 84 ~~~i~~~l~~~---~pD~Vv~tG---Dl~~~~~---~~~~~~~~~~~~~~~~l~~--~~iP~~~v 137 (390)
+..+.+.+... +||+||+.- |+..... ...+.....+..+++.+++ .+.+++++
T Consensus 49 ~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 49 LKVLPKIFLEEKLAQPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHHHHHhcCccccCCceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 45555555544 899999866 7765432 1122233445667776666 56666665
No 164
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.62 E-value=3.1e+02 Score=23.83 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCEEEEe---CccCCCCch--------h--hhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 85 KVMSTVLDHETPDFVIYL---GDVITANNM--------A--VANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 85 ~~i~~~l~~~~pD~Vv~t---GDl~~~~~~--------~--~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
+.+.+.+.+.+||.|+++ -|+...... . .+.....+..+++.+.+.+++++++
T Consensus 49 ~~~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 49 EKLKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 456666777899999887 254321111 0 1122234556666666677887765
No 165
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=23.12 E-value=2.2e+02 Score=23.54 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGN 140 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GN 140 (390)
....+.++++...+-.++++|+|-... ...+++...+.++|+.+|-..
T Consensus 50 ~~~~~~~~l~~~~~~~l~ing~l~~~~----------~~~YiklA~~~~~~fTiv~~~ 97 (120)
T PF07997_consen 50 IYPEFEQALKDYPNYKLKINGNLDYSF----------QSKYIKLANKHGIPFTIVNDP 97 (120)
T ss_dssp --HHHHHHHHC-SSEEEEEETTS-HHH----------HHHHHHHHHHTT--EEEE---
T ss_pred HHHHHHHHHhhCCCeEEEEcCCCCHHH----------HHHHHHHHHHcCCCEEEeCCC
Confidence 446778888888889999999984332 235566667789999888544
No 166
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=22.95 E-value=1.3e+02 Score=27.48 Aligned_cols=24 Identities=21% Similarity=0.649 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhh
Q 016360 228 AYMYFLDSGGGSYPEVISSAQAEWFRHKAEEI 259 (390)
Q Consensus 228 ~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~ 259 (390)
-.|+|+|.. ++.|++|.++.....
T Consensus 121 ~~LvfiDgd--------D~~Qv~wak~~~~~~ 144 (209)
T PRK13738 121 QTLYFINGD--------DPAQVAWMKRQTPPT 144 (209)
T ss_pred ceEEEEeCC--------CHHHHHHHHHhhhcc
Confidence 368999964 699999999976643
No 167
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.91 E-value=1.3e+02 Score=29.19 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=25.1
Q ss_pred HhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 91 LDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 91 l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
|.+.+||+||.++........ ....+.|.+.++|++.+.
T Consensus 87 l~~l~PDLIi~~~~~~~~~~~---------~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 87 VLTLKPDLVILNIWAKTTAEE---------SGILEKLEQAGIPVVFVD 125 (342)
T ss_pred HhhcCCCEEEEeccccccchh---------hHHHHHHHHcCCcEEEEe
Confidence 345799999987754321110 134555677899999885
No 168
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=22.83 E-value=2.7e+02 Score=23.98 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHhhcCCCEEEEeCc
Q 016360 81 FNSVKVMSTVLDHETPDFVIYLGD 104 (390)
Q Consensus 81 ~~~~~~i~~~l~~~~pD~Vv~tGD 104 (390)
.+..+.+.+.+...+||+|++.|.
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g~ 72 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGGN 72 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE--S
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Confidence 445677788888999999999884
No 169
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.83 E-value=2.6e+02 Score=26.42 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEc
Q 016360 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIF 138 (390)
Q Consensus 59 i~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~ 138 (390)
+.+++|+|...... .......+.....+....+|.|++||.-+-..... +.++++.+. .++|+++=-
T Consensus 141 v~ilaDV~~kh~~~-----l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~-----~~l~~vr~~---~~~PVlvGS 207 (254)
T PF03437_consen 141 VKILADVHVKHSSP-----LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDP-----EKLKRVREA---VPVPVLVGS 207 (254)
T ss_pred eEEEeeechhhccc-----CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCH-----HHHHHHHhc---CCCCEEEec
Confidence 88899999876432 11111223344455567899999999987655432 223344332 448888644
Q ss_pred c
Q 016360 139 G 139 (390)
Q Consensus 139 G 139 (390)
|
T Consensus 208 G 208 (254)
T PF03437_consen 208 G 208 (254)
T ss_pred C
Confidence 4
No 170
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.80 E-value=2.7e+02 Score=21.19 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCC
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDD 143 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~ 143 (390)
...+.+....||++++-.++-+... ...++++.+. ...+|+.++-.++|.
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~------~~~~~~i~~~--~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDG------LELLEQIRQI--NPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBH------HHHHHHHHHH--TTTSEEEEEESSTSH
T ss_pred HHHHHhcccCceEEEEEeeeccccc------cccccccccc--cccccEEEecCCCCH
Confidence 3345556778999999988877443 1233333322 156788887766654
No 171
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=22.58 E-value=98 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=29.8
Q ss_pred EEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEE--EccCCCCCC
Q 016360 98 FVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWAS--IFGNHDDAP 145 (390)
Q Consensus 98 ~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~--v~GNHD~~~ 145 (390)
+++.+|+-..+...+. +++.+.|...++|+++ ++|+||...
T Consensus 241 ~~l~~g~~~~~~~~pN-------r~L~~~L~~~g~~~~yre~~GgHdw~~ 283 (299)
T COG2382 241 IVLTTGGEEGDFLRPN-------RALAAQLEKKGIPYYYREYPGGHDWAW 283 (299)
T ss_pred EEeecCCccccccchh-------HHHHHHHHhcCCcceeeecCCCCchhH
Confidence 8888898887766532 2445556677888765 999999974
No 172
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.56 E-value=1.3e+02 Score=26.85 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccC
Q 016360 83 SVKVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGN 140 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GN 140 (390)
....+.+.++..+||++|+.+- +.|-.++..+.+.++|++.|-|=
T Consensus 83 ~~~~~~rfl~~~~P~~~i~~Et-------------ElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 FPWAVRRFLDHWRPDLLIWVET-------------ELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp SHHHHHHHHHHH--SEEEEES-----------------HHHHHH-----S-EEEEEE-
T ss_pred CHHHHHHHHHHhCCCEEEEEcc-------------ccCHHHHHHHhhcCCCEEEEeee
Confidence 3346677788889999998753 34668888888999999999775
No 173
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=22.14 E-value=1.3e+02 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.3
Q ss_pred EEEEeCCC---CCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEc-cCc
Q 016360 230 MYFLDSGG---GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWH-IPS 275 (390)
Q Consensus 230 l~~lDS~~---g~~~g~i~~~Ql~WL~~~L~~~~~~~~~p~ivF~H-~P~ 275 (390)
++++=|+. .+|.| +.-|+.||++.+....+. -+.|+|+| +.|
T Consensus 53 lLv~~SGtHGVEGf~G--SaiQ~~~L~~~~~~~~~~--~~avllVHAlNP 98 (341)
T PF10994_consen 53 LLVLTSGTHGVEGFAG--SAIQIALLREDLARSLPA--GVAVLLVHALNP 98 (341)
T ss_pred EEEEEecCCccccccc--HHHHHHHHHcccccccCC--CCeEEEEEccCc
Confidence 55555653 23444 778999999976554432 36899998 344
No 174
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=21.88 E-value=1e+02 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=20.8
Q ss_pred CCCceEEEeCcCCCCCcccCCCCeeEeecCCccCCC
Q 016360 316 RTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGG 351 (390)
Q Consensus 316 ~~~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG~~~ 351 (390)
+.+...+++||+|.... ...++ .++...++.||+
T Consensus 179 ~~~~~~vv~GHt~~~~~-~~~~~-~i~IDtGav~gG 212 (234)
T cd07423 179 YRGDALVVYGHTPVPEP-RWLNN-TINIDTGCVFGG 212 (234)
T ss_pred CCCCeEEEECCCCCccc-eEeCC-EEEEECCCCCCC
Confidence 34667899999999652 22333 344455556554
No 175
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.74 E-value=1.8e+02 Score=23.13 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCC
Q 016360 87 MSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHD 142 (390)
Q Consensus 87 i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD 142 (390)
....++..+.-+||++.|.-. .. ..++.......++|++...|+-+
T Consensus 24 v~kai~~gkaklViiA~D~~~-~~---------~~~i~~~c~~~~Ip~~~~~~tk~ 69 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPK-DI---------KEDIEYYAKLSGIPVYEYEGSSV 69 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCH-HH---------HHHHHHHHHHcCCCEEEECCCHH
Confidence 344455678899999999522 11 12344444567999988777643
No 176
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.52 E-value=1.5e+02 Score=27.62 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHhhcCCCEEEEeCcc-CCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCCC
Q 016360 89 TVLDHETPDFVIYLGDV-ITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDAP 145 (390)
Q Consensus 89 ~~l~~~~pD~Vv~tGDl-~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 145 (390)
+.+.+..-|++++.|=. +... ..+++++.+++.++|++.-|||++.-.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~---------~~~~~v~~ik~~~lPvilfp~~~~~i~ 74 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEE---------NVDELVKAIKEYDLPVILFPGNIEGIS 74 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchH---------HHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 33455678999999965 3321 234677777778899999999998754
No 177
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.42 E-value=3.9e+02 Score=22.46 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCEEEEeC---ccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 83 SVKVMSTVLDHETPDFVIYLG---DVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
.+..+.+.+...+||+|++.. |+..+.. .++....+.++++.+++.+.+++++
T Consensus 52 ~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~--~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 52 GLARLPALLAQHKPDLVILELGGNDGLRGIP--PDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCcccccCCC--HHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 445666667677999877643 3332221 1223345667777777778887765
No 178
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=20.85 E-value=1.5e+02 Score=25.78 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEccCCCCC
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFGNHDDA 144 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 144 (390)
...+.+...+||+||..-|-.+-.. . + .+...+.++++|+.++.==-|..
T Consensus 69 v~~~~l~~~~~D~ii~VvDa~~l~r-----~---l-~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 69 VARDYLLSEKPDLIIVVVDATNLER-----N---L-YLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp HHHHHHHHTSSSEEEEEEEGGGHHH-----H---H-HHHHHHHHTTSSEEEEEETHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCHHH-----H---H-HHHHHHHHcCCCEEEEEeCHHHH
Confidence 3345566789999999999765211 1 1 34556678899999887555543
No 179
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=20.84 E-value=1e+02 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=17.2
Q ss_pred CceEEEeCcCCCCCcccCCCCeeEeecCCcc
Q 016360 318 SVKAVFVGHNHGLDWCCPYQNLWLCFARHTG 348 (390)
Q Consensus 318 ~V~~vf~GH~H~nd~~~~~~gi~~~~~~~tG 348 (390)
+.+.|++||+|... ....++. ++..+.+.
T Consensus 168 ~~~~iV~GHTh~~~-~~~~~~~-i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKR-PLRLGNV-LYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCc-ceEECCE-EEEECCCC
Confidence 45789999999864 3333443 33334343
No 180
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=20.77 E-value=1.7e+02 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=28.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHHhhcCCCEEEEeCccC
Q 016360 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETPDFVIYLGDVI 106 (390)
Q Consensus 54 ~~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~i~~~l~~~~pD~Vv~tGDl~ 106 (390)
++..+|++.||++--. .+ ..++. +.+.+||++|+.|=.+
T Consensus 174 dg~~~i~faSDvqGp~---------~~-~~l~~----i~e~~P~v~ii~GPpt 212 (304)
T COG2248 174 DGKSSIVFASDVQGPI---------ND-EALEF----ILEKRPDVLIIGGPPT 212 (304)
T ss_pred cCCeEEEEcccccCCC---------cc-HHHHH----HHhcCCCEEEecCCch
Confidence 6789999999998532 22 23333 3345999999999988
No 181
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.74 E-value=1.5e+02 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhh
Q 016360 228 AYMYFLDSGGGSYPEVISSAQAEWFRHKAEEI 259 (390)
Q Consensus 228 ~~l~~lDS~~g~~~g~i~~~Ql~WL~~~L~~~ 259 (390)
-.|+|+|.. ++.|++|.++.....
T Consensus 123 ~~LvfiDg~--------D~~Qv~wa~~~~~~~ 146 (202)
T TIGR02743 123 KTLLFFDAD--------DPEQLAWAQQQLPSC 146 (202)
T ss_pred ceEEEEeCC--------CHHHHHHHHHhcccC
Confidence 358899964 789999999977654
No 182
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.62 E-value=1.6e+02 Score=25.51 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=22.9
Q ss_pred HhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEcc
Q 016360 91 LDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFG 139 (390)
Q Consensus 91 l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~G 139 (390)
+...+||+||..+-..+. ...+.+.+.+||++++.-
T Consensus 65 ll~l~PDlii~~~~~~~~-------------~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 65 IVALKPDLVILYGGFQAQ-------------TILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HhccCCCEEEEecCCCch-------------hHHHHHHHcCCCEEEeCC
Confidence 335799999986531110 233445678999988864
No 183
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=1.1e+02 Score=27.76 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHhhcCCCEEEEeCcc
Q 016360 79 QDFNSVKVMSTVLDHETPDFVIYLGDV 105 (390)
Q Consensus 79 ~~~~~~~~i~~~l~~~~pD~Vv~tGDl 105 (390)
...+..+.+.+.+++.+||+|+..|=-
T Consensus 44 ~f~~s~~~l~~~i~~~qPd~vl~iG~A 70 (207)
T COG2039 44 VFKKSIDALVQAIAEVQPDLVLAIGQA 70 (207)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 345677888899999999999999953
No 184
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.40 E-value=2.7e+02 Score=25.64 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEE
Q 016360 85 KVMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASI 137 (390)
Q Consensus 85 ~~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v 137 (390)
+.....+++.+|||||+.|=---.-... ...+.+.+.++|..++
T Consensus 50 aav~~~~e~~~pDfvi~isPNpaaPGP~---------kARE~l~~s~~Paiii 93 (277)
T COG1927 50 AAVTEMLEEFNPDFVIYISPNPAAPGPK---------KAREILSDSDVPAIII 93 (277)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCch---------HHHHHHhhcCCCEEEe
Confidence 3445667778999999988655433221 3345556789998776
No 185
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.20 E-value=3.5e+02 Score=23.32 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCEEEEeC---ccCCCCchhhhhHHHHHHHHHhhhHh--CCCCEEEE
Q 016360 83 SVKVMSTVLDHETPDFVIYLG---DVITANNMAVANASLYWDQAISPTRV--RGIPWASI 137 (390)
Q Consensus 83 ~~~~i~~~l~~~~pD~Vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~--~~iP~~~v 137 (390)
.++.+.+ +...+||+|++.. |+...... .+..+.+.++++.+++ .+.+++++
T Consensus 56 ~~~~l~~-~~~~~pd~Vii~~G~ND~~~~~~~--~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 56 LLRQLAP-LPETRFDVAVISIGVNDVTHLTSI--ARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred HHHHHHh-cccCCCCEEEEEecccCcCCCCCH--HHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3444444 3457999987742 66554321 2233445677777766 56777654
No 186
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=20.07 E-value=1.7e+02 Score=22.58 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCEEEEeCccCCCCchhhhhHHHHHHHHHhhhHhCCCCEEEEcc
Q 016360 86 VMSTVLDHETPDFVIYLGDVITANNMAVANASLYWDQAISPTRVRGIPWASIFG 139 (390)
Q Consensus 86 ~i~~~l~~~~pD~Vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~v~G 139 (390)
...+.++..+.-+||++.|.-..... . .+.....+.+||++.++.
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~------~---~l~~~c~~~~Ip~~~~~s 66 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIK------K---HLPALCEEKNIPYVFVPS 66 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHH------H---HHHHHHHHTTEEEEEESH
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhc------c---cchhheeccceeEEEECC
Confidence 44555666789999999998554321 1 133333578999988873
Done!