Query 016362
Match_columns 390
No_of_seqs 318 out of 3793
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3207 Beta-tubulin folding c 100.0 1.7E-56 3.7E-61 402.5 15.7 361 8-390 2-366 (505)
2 KOG2982 Uncharacterized conser 99.9 2.1E-25 4.5E-30 192.8 8.1 241 133-390 46-291 (418)
3 PLN00113 leucine-rich repeat r 99.9 6.6E-22 1.4E-26 210.5 14.7 10 38-47 58-67 (968)
4 KOG4194 Membrane glycoprotein 99.9 8.9E-24 1.9E-28 197.5 -0.1 229 126-386 143-373 (873)
5 PLN00113 leucine-rich repeat r 99.9 1E-21 2.2E-26 209.1 13.7 249 123-387 155-413 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.3E-23 5E-28 196.2 -3.2 251 116-383 39-296 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.8E-22 3.9E-27 188.8 2.4 233 124-387 117-350 (873)
8 KOG0444 Cytoskeletal regulator 99.8 5.5E-22 1.2E-26 187.0 -1.1 246 122-387 116-371 (1255)
9 PF01302 CAP_GLY: CAP-Gly doma 99.8 7.2E-20 1.6E-24 127.7 8.1 67 11-78 1-68 (69)
10 PRK15387 E3 ubiquitin-protein 99.7 4.8E-18 1E-22 170.9 10.1 67 117-195 209-275 (788)
11 cd00116 LRR_RI Leucine-rich re 99.7 5.1E-18 1.1E-22 158.0 7.2 251 120-386 39-315 (319)
12 cd00116 LRR_RI Leucine-rich re 99.7 8.3E-18 1.8E-22 156.6 8.5 246 126-387 17-287 (319)
13 KOG0472 Leucine-rich repeat pr 99.7 1.1E-20 2.5E-25 169.7 -10.9 86 254-361 225-310 (565)
14 KOG0472 Leucine-rich repeat pr 99.7 3.5E-20 7.6E-25 166.6 -8.1 240 122-385 58-304 (565)
15 PRK15387 E3 ubiquitin-protein 99.7 4E-17 8.7E-22 164.3 10.9 200 131-362 241-459 (788)
16 KOG0618 Serine/threonine phosp 99.7 2.5E-18 5.4E-23 169.1 -1.2 214 134-359 243-487 (1081)
17 KOG4237 Extracellular matrix p 99.7 2.1E-18 4.6E-23 154.9 -1.9 241 114-364 51-362 (498)
18 PF14580 LRR_9: Leucine-rich r 99.7 2.2E-17 4.7E-22 137.6 4.2 136 227-390 16-152 (175)
19 KOG3206 Alpha-tubulin folding 99.6 2.1E-16 4.6E-21 128.6 6.3 72 9-81 149-222 (234)
20 PRK15370 E3 ubiquitin-protein 99.6 1.9E-16 4.1E-21 160.2 7.4 110 120-245 189-298 (754)
21 KOG0618 Serine/threonine phosp 99.6 5.1E-18 1.1E-22 166.9 -4.8 136 201-362 379-514 (1081)
22 PLN03210 Resistant to P. syrin 99.6 5.1E-15 1.1E-19 159.0 17.0 251 120-388 622-903 (1153)
23 PRK15370 E3 ubiquitin-protein 99.6 4.4E-15 9.6E-20 150.3 12.0 202 132-362 178-381 (754)
24 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.8E-22 133.9 -5.0 160 128-297 29-188 (264)
25 PLN03210 Resistant to P. syrin 99.6 3E-14 6.4E-19 153.2 16.3 229 133-388 590-835 (1153)
26 KOG0617 Ras suppressor protein 99.6 7.1E-18 1.5E-22 135.3 -8.8 183 150-362 28-213 (264)
27 KOG4237 Extracellular matrix p 99.5 1.2E-16 2.6E-21 143.7 -4.9 230 113-363 71-401 (498)
28 KOG1909 Ran GTPase-activating 99.5 1.2E-15 2.6E-20 135.5 1.5 228 122-361 48-311 (382)
29 COG5244 NIP100 Dynactin comple 99.5 3.4E-14 7.3E-19 129.4 7.3 68 6-77 1-68 (669)
30 KOG1909 Ran GTPase-activating 99.4 8.3E-14 1.8E-18 123.9 5.4 267 106-388 3-308 (382)
31 KOG1259 Nischarin, modulator o 99.4 1.2E-14 2.7E-19 126.7 0.1 207 124-362 174-413 (490)
32 KOG0532 Leucine-rich repeat (L 99.4 2E-14 4.3E-19 135.1 -4.4 196 130-359 73-271 (722)
33 KOG1259 Nischarin, modulator o 99.3 3.5E-13 7.7E-18 117.7 2.2 133 154-297 282-414 (490)
34 KOG0971 Microtubule-associated 99.3 3.1E-12 6.8E-17 124.8 7.1 72 5-78 2-73 (1243)
35 PF14580 LRR_9: Leucine-rich r 99.3 9.1E-13 2E-17 109.9 2.6 136 201-362 15-152 (175)
36 KOG3207 Beta-tubulin folding c 99.3 2.5E-12 5.4E-17 117.7 4.8 61 319-384 267-332 (505)
37 COG4886 Leucine-rich repeat (L 99.2 6.8E-12 1.5E-16 120.4 5.9 174 156-361 116-290 (394)
38 COG4886 Leucine-rich repeat (L 99.2 2.8E-11 6E-16 116.2 6.1 183 125-338 109-292 (394)
39 KOG0532 Leucine-rich repeat (L 99.2 7.5E-13 1.6E-17 124.7 -5.0 164 120-297 86-249 (722)
40 KOG1644 U2-associated snRNP A' 99.1 6.7E-11 1.4E-15 97.9 4.9 110 257-389 42-151 (233)
41 KOG1859 Leucine-rich repeat pr 99.1 3.3E-12 7.2E-17 123.4 -3.9 180 150-362 104-293 (1096)
42 KOG4568 Cytoskeleton-associate 99.1 9E-11 1.9E-15 115.6 3.7 72 2-76 11-82 (664)
43 KOG2120 SCF ubiquitin ligase, 99.0 2.8E-11 6E-16 105.8 -1.9 183 156-359 185-374 (419)
44 KOG0531 Protein phosphatase 1, 99.0 9.8E-11 2.1E-15 112.9 -0.1 156 127-297 90-247 (414)
45 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4E-15 111.0 -0.1 216 129-361 69-290 (414)
46 COG5238 RNA1 Ran GTPase-activa 98.9 3E-09 6.6E-14 92.1 6.0 243 107-362 4-286 (388)
47 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9E-14 72.3 3.6 61 282-360 1-61 (61)
48 KOG2982 Uncharacterized conser 98.8 1.3E-08 2.8E-13 89.4 7.4 200 120-336 85-290 (418)
49 KOG2120 SCF ubiquitin ligase, 98.8 2.2E-09 4.8E-14 94.1 1.7 168 122-292 200-373 (419)
50 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 69.7 4.1 61 230-294 1-61 (61)
51 KOG1859 Leucine-rich repeat pr 98.7 1.7E-10 3.7E-15 111.9 -8.1 105 156-270 187-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.6 2E-08 4.3E-13 87.2 3.3 250 102-364 30-319 (388)
53 PLN03150 hypothetical protein; 98.6 6.8E-08 1.5E-12 97.6 6.9 84 184-271 420-504 (623)
54 KOG4341 F-box protein containi 98.6 8.7E-09 1.9E-13 94.3 -0.1 259 119-386 151-434 (483)
55 PLN03150 hypothetical protein; 98.6 9.8E-08 2.1E-12 96.5 7.2 108 157-270 419-528 (623)
56 KOG3665 ZYG-1-like serine/thre 98.5 6.1E-08 1.3E-12 98.0 2.3 162 181-358 121-285 (699)
57 KOG4658 Apoptotic ATPase [Sign 98.5 5.6E-08 1.2E-12 100.8 1.7 106 132-240 545-652 (889)
58 KOG2123 Uncharacterized conser 98.5 1.2E-08 2.6E-13 88.8 -2.7 111 256-389 18-128 (388)
59 KOG4341 F-box protein containi 98.4 1.7E-07 3.7E-12 86.1 3.2 162 203-383 292-457 (483)
60 KOG2739 Leucine-rich acidic nu 98.4 2.5E-07 5.4E-12 80.2 3.3 112 256-389 42-154 (260)
61 KOG1644 U2-associated snRNP A' 98.4 4.9E-07 1.1E-11 75.4 4.7 106 183-292 43-150 (233)
62 KOG4658 Apoptotic ATPase [Sign 98.3 7.2E-07 1.6E-11 92.7 4.8 160 126-297 565-732 (889)
63 KOG4579 Leucine-rich repeat (L 98.3 8.4E-08 1.8E-12 74.9 -1.8 110 231-362 28-137 (177)
64 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.6E-12 74.1 -1.5 132 207-364 29-162 (177)
65 KOG3556 Familial cylindromatos 98.2 2.7E-06 5.8E-11 79.5 6.8 75 9-85 236-319 (724)
66 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 54.3 3.8 38 323-362 1-38 (44)
67 KOG4568 Cytoskeleton-associate 98.1 6.3E-07 1.4E-11 88.9 0.8 72 5-79 151-222 (664)
68 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.7E-11 53.4 2.8 41 282-340 1-41 (44)
69 KOG3665 ZYG-1-like serine/thre 98.0 2.8E-06 6E-11 86.2 2.7 138 204-362 121-264 (699)
70 KOG2123 Uncharacterized conser 97.9 5.5E-07 1.2E-11 78.6 -3.4 88 203-298 17-104 (388)
71 KOG0241 Kinesin-like protein [ 97.9 1E-05 2.2E-10 80.8 4.3 71 5-82 1627-1697(1714)
72 KOG1947 Leucine rich repeat pr 97.7 1.9E-05 4.1E-10 77.7 3.3 232 128-362 184-441 (482)
73 KOG2739 Leucine-rich acidic nu 97.7 5.5E-06 1.2E-10 72.0 -0.5 42 255-296 63-105 (260)
74 KOG1947 Leucine rich repeat pr 97.7 2.9E-05 6.3E-10 76.4 3.9 207 150-362 182-415 (482)
75 PRK15386 type III secretion pr 97.5 0.00048 1E-08 65.0 9.2 143 124-295 44-190 (426)
76 PRK15386 type III secretion pr 97.2 0.0019 4E-08 61.1 8.7 138 176-358 46-187 (426)
77 KOG4308 LRR-containing protein 97.0 1.9E-05 4.1E-10 76.8 -6.7 40 323-362 262-304 (478)
78 KOG4308 LRR-containing protein 96.7 9.4E-05 2E-09 72.0 -4.3 182 116-297 99-305 (478)
79 KOG3763 mRNA export factor TAP 96.7 0.001 2.2E-08 63.9 2.5 94 280-389 216-312 (585)
80 PF13306 LRR_5: Leucine rich r 96.5 0.012 2.6E-07 46.5 7.4 57 229-291 11-67 (129)
81 PF13306 LRR_5: Leucine rich r 96.5 0.0072 1.6E-07 47.8 6.0 122 200-350 7-128 (129)
82 KOG3864 Uncharacterized conser 95.7 0.0024 5.2E-08 53.7 -0.4 39 321-360 149-188 (221)
83 KOG3864 Uncharacterized conser 95.2 0.0034 7.3E-08 52.9 -1.0 37 322-359 124-162 (221)
84 PF13504 LRR_7: Leucine rich r 94.8 0.02 4.3E-07 27.9 1.4 15 324-338 2-16 (17)
85 PF00560 LRR_1: Leucine Rich R 93.9 0.022 4.7E-07 29.8 0.5 16 324-339 1-16 (22)
86 PF00560 LRR_1: Leucine Rich R 92.6 0.051 1.1E-06 28.3 0.7 12 184-195 2-13 (22)
87 PTZ00243 ABC transporter; Prov 92.0 0.23 5E-06 56.1 5.4 60 9-68 125-200 (1560)
88 KOG3763 mRNA export factor TAP 90.9 0.34 7.4E-06 47.2 4.6 83 153-236 215-307 (585)
89 smart00369 LRR_TYP Leucine-ric 90.0 0.3 6.4E-06 26.5 2.1 17 323-339 2-18 (26)
90 smart00370 LRR Leucine-rich re 90.0 0.3 6.4E-06 26.5 2.1 17 323-339 2-18 (26)
91 PF10781 DSRB: Dextransucrase 87.5 5.9 0.00013 25.8 7.0 59 9-76 1-61 (62)
92 PRK10708 hypothetical protein; 87.2 5.9 0.00013 25.8 6.8 58 9-75 1-60 (62)
93 smart00365 LRR_SD22 Leucine-ri 87.2 0.54 1.2E-05 25.7 1.9 17 323-339 2-18 (26)
94 KOG0473 Leucine-rich repeat pr 86.6 0.011 2.3E-07 51.0 -7.6 86 254-361 39-124 (326)
95 PF13516 LRR_6: Leucine Rich r 84.8 0.8 1.7E-05 24.2 1.8 18 205-222 2-19 (24)
96 smart00368 LRR_RI Leucine rich 80.0 2.6 5.6E-05 23.3 2.7 21 205-225 2-22 (28)
97 smart00364 LRR_BAC Leucine-ric 79.6 1.3 2.8E-05 24.1 1.3 18 323-340 2-19 (26)
98 PF09926 DUF2158: Uncharacteri 78.7 9.3 0.0002 24.9 5.4 43 9-52 1-43 (53)
99 smart00367 LRR_CC Leucine-rich 78.1 1.6 3.4E-05 23.6 1.5 15 323-337 2-17 (26)
100 PF07154 DUF1392: Protein of u 75.7 3.8 8.2E-05 32.4 3.5 45 6-52 85-132 (150)
101 KOG0473 Leucine-rich repeat pr 70.5 0.36 7.8E-06 42.0 -3.5 87 128-218 38-124 (326)
102 PHA02146 hypothetical protein 69.7 5.8 0.00013 27.0 2.8 46 8-53 2-55 (86)
103 PF04319 NifZ: NifZ domain; I 67.8 4.4 9.5E-05 28.5 2.0 25 6-36 2-26 (75)
104 smart00446 LRRcap occurring C- 64.2 4.6 9.9E-05 22.0 1.2 19 369-387 4-22 (26)
105 KOG4242 Predicted myosin-I-bin 54.8 80 0.0017 30.9 8.4 157 133-292 215-390 (553)
106 TIGR00864 PCC polycystin catio 49.7 13 0.00028 43.8 2.9 36 329-365 1-36 (2740)
107 PF11948 DUF3465: Protein of u 48.7 25 0.00054 27.7 3.4 20 42-61 106-130 (131)
108 KOG4600 Mitochondrial ribosoma 32.5 91 0.002 24.6 4.2 41 8-48 71-115 (144)
109 PRK04306 50S ribosomal protein 32.1 44 0.00095 24.9 2.4 35 7-45 33-77 (98)
110 PF00924 MS_channel: Mechanose 30.5 47 0.001 28.3 2.8 24 7-33 59-82 (206)
111 PF06507 Auxin_resp: Auxin res 27.8 30 0.00065 25.0 0.9 38 7-46 37-80 (83)
112 KOG1665 AFH1-interacting prote 27.5 61 0.0013 28.1 2.8 40 205-244 171-210 (302)
113 PF07723 LRR_2: Leucine Rich R 26.0 60 0.0013 17.5 1.7 13 158-170 2-14 (26)
114 PRK04980 hypothetical protein; 23.0 1.1E+02 0.0024 23.1 3.1 24 7-30 30-55 (102)
115 PF13403 Hint_2: Hint domain 21.7 1.2E+02 0.0026 24.5 3.5 25 7-33 19-43 (147)
116 PRK14533 groES co-chaperonin G 21.4 1.2E+02 0.0025 22.4 3.0 13 6-18 51-63 (91)
117 PF10816 DUF2760: Domain of un 21.4 2.8E+02 0.0061 21.6 5.1 39 10-49 63-109 (125)
118 PRK10334 mechanosensitive chan 21.3 1.2E+02 0.0026 27.6 3.8 24 7-33 128-151 (286)
119 PF12701 LSM14: Scd6-like Sm d 21.1 94 0.002 23.1 2.5 25 6-34 2-26 (96)
120 PF14801 GCD14_N: tRNA methylt 20.3 89 0.0019 20.4 1.9 47 7-56 4-52 (54)
121 TIGR00739 yajC preprotein tran 20.2 1.6E+02 0.0035 21.2 3.5 23 7-31 36-58 (84)
122 TIGR00864 PCC polycystin catio 20.2 70 0.0015 38.3 2.3 35 236-273 1-35 (2740)
No 1
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-56 Score=402.53 Aligned_cols=361 Identities=31% Similarity=0.532 Sum_probs=315.8
Q ss_pred CCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCC-CCCCCEECCEEEEecCCCCcceeeeeccCCCCCCchH
Q 016362 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGN-GKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~-gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~~s~~~ 86 (390)
.|+||+||.+.+ .+|||||+|+|+||++.|+||||||+. |||+|.+.|++||++++|++|||+++.++..+.++..
T Consensus 2 ~~~IG~RvkI~~---~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~~ 78 (505)
T KOG3207|consen 2 TMEIGTRVKIGG---EIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLLR 78 (505)
T ss_pred ceeccceEEEcC---EEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHHH
Confidence 589999999965 569999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcccccceEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCC
Q 016362 87 ALRVRYRGESSKEEEDEMYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTG 165 (390)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~ 165 (390)
++.++|........+. ...++.+++. +|.+||+++.+..++++.|+++.|.++.+...+. .....|++++.|||++
T Consensus 79 t~~ery~e~~s~~sd~-~~~~si~nK~--vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 79 TFKERYYEKYSYSSDL-ESVLSISNKQ--VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred HHHHHHHHhhcCCcch-hhHhhhcCce--eEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchh
Confidence 9999998887655443 3344556665 8999999999999999999999999999988775 5677789999999999
Q ss_pred CcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC--CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcc
Q 016362 166 NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG--LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 166 n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 243 (390)
|.+..|..+..++.++|+|+.|+++.|++...... -..+++|+.|.++.|++++..+..+...+|+|+.|++..|...
T Consensus 156 NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 156 NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 99999999999999999999999999998765442 3377899999999999999999999999999999999999522
Q ss_pred ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCC
Q 016362 244 EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQ 323 (390)
Q Consensus 244 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 323 (390)
..... ....++.|+.|||++|++.+.+.....+.++.|..|+++.|.+.++..|+.....+ ...++
T Consensus 236 ~~~~~---~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k-----------t~~f~ 301 (505)
T KOG3207|consen 236 LIKAT---STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK-----------THTFP 301 (505)
T ss_pred ceecc---hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh-----------hcccc
Confidence 22111 23456889999999999999887677889999999999999999998777522111 45789
Q ss_pred CCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccCC
Q 016362 324 NLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 324 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
+|+.|+++.|+|.+|+.+..+..+++|+.|++..|++.... +.+...+||++++|..||.+.|.+
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~--~~a~~~VIAr~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET--DTAKLLVIARISQLVKLNDVDISP 366 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccccc--cceeEEeeeehhhhhhhcccccCh
Confidence 99999999999999999999999999999999999998654 377888899999999999998863
No 2
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=2.1e-25 Score=192.79 Aligned_cols=241 Identities=40% Similarity=0.635 Sum_probs=203.0
Q ss_pred cccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCC-CCCCCccE
Q 016362 133 ELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGL-PQLKSIRI 209 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~-~~l~~L~~ 209 (390)
.+..+.+.++.|...+. .+...+..+++|||.+|.+++|+++..++.++|+|++|+++.|.+...+..+ ....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44456677777776666 6677789999999999999999999999999999999999999998877766 47889999
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCC-CCCccEEEcCCCCCCCchhhhhcCC-CCCcCeE
Q 016362 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQG-FDNLQLLNLEDNCIAEWSEILKLCQ-IRSLEQL 287 (390)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L 287 (390)
|.|+++.+.|.....++..+|.+++|+++.|.++..-.. ...... -+.+.+|.+..|....|.....+++ .|++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D-d~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD-DNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc-cccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999999999999999999999999999999966533211 001111 2468888888888777766555553 7899999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
.+..|.|.+...... +.+++.+..|+|+.|+|.+|..++++..+|.|..|++++||+.+...+.
T Consensus 205 ~v~e~PlK~~s~ek~----------------se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKG----------------SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred eeecCcccchhhccc----------------CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 999999888754333 6788999999999999999999999999999999999999999988888
Q ss_pred hhhhhhhhhcCCceEecCcccCC
Q 016362 368 ISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
.+++.+|||++++++||||.|+|
T Consensus 269 err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred cceEEEEeeccceEEecCcccch
Confidence 99999999999999999999985
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=6.6e-22 Score=210.50 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=7.8
Q ss_pred CeEEEEEecC
Q 016362 38 GTWLGVDWDY 47 (390)
Q Consensus 38 ~~w~Gv~~d~ 47 (390)
..|.||.|++
T Consensus 58 c~w~gv~c~~ 67 (968)
T PLN00113 58 CLWQGITCNN 67 (968)
T ss_pred CcCcceecCC
Confidence 5688998874
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=8.9e-24 Score=197.49 Aligned_cols=229 Identities=26% Similarity=0.307 Sum_probs=140.4
Q ss_pred HHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~ 203 (390)
+.++.++.|+.|+|+.|.|+.++. .+... .++++|+|++|.|+.++. ..|..+.+|.+|.|+.|+++..++ .|.+
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKR 219 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhh
Confidence 455666667777777777766655 33332 567777777777765432 445566667777777777766555 4555
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
+++|+.|+|..|++.....-. +..+++|+.|.+.+|.+...... .+..+..+++|+|+.|+++.... ..+..++.
T Consensus 220 L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~ 294 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNE-GWLFGLTS 294 (873)
T ss_pred cchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhc-ccccccch
Confidence 777777777777665322222 36667777777777777666544 45666777777777777766554 55666777
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016362 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|.|..+.... -..+++|++|+|++|+|+..+. +.|..+..|++|+|++|.|..
T Consensus 295 L~~L~lS~NaI~rih~d~-----------------WsftqkL~~LdLs~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~- 355 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDS-----------------WSFTQKLKELDLSSNRITRLDE-GSFRVLSQLEELNLSHNSIDH- 355 (873)
T ss_pred hhhhccchhhhheeecch-----------------hhhcccceeEeccccccccCCh-hHHHHHHHhhhhcccccchHH-
Confidence 777777777777765322 2345666666666666666532 455566666666666666653
Q ss_pred CCcchhhhhhhhhcCCceEecCc
Q 016362 364 GRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 364 ~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+... .+..+++|++||++
T Consensus 356 ----l~e~-af~~lssL~~LdLr 373 (873)
T KOG4194|consen 356 ----LAEG-AFVGLSSLHKLDLR 373 (873)
T ss_pred ----HHhh-HHHHhhhhhhhcCc
Confidence 2221 23445555555554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1e-21 Score=209.08 Aligned_cols=249 Identities=21% Similarity=0.189 Sum_probs=149.4
Q ss_pred HHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-C
Q 016362 123 KIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-G 200 (390)
Q Consensus 123 ~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~ 200 (390)
.+|..+..+++|+.|++++|.+....+ .+.. +++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+ .
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcC--cCChHHcCcCCccEEECcCCccCCcCChh
Confidence 345566666777777777666654444 3333 4667777777766665 456666666777777777666665544 4
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+.+..+ ..+..
T Consensus 232 l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~ 306 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLSDNSLSGEIP-ELVIQ 306 (968)
T ss_pred HhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECcCCeeccCCC-hhHcC
Confidence 6666677777777666654 3444446666677777776666654332 45566667777777776655433 34556
Q ss_pred CCCcCeEecCCCccccccCCCC---CchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcE
Q 016362 281 IRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMD 352 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~ 352 (390)
+++|+.|++++|.+++.. |.. ...++.++++.|.+.+ +..+++|+.|++++|++++. .++.+..+++|+.
T Consensus 307 l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~ 384 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFK 384 (968)
T ss_pred CCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee-CChhHhCcCCCCE
Confidence 667777777777665542 222 1223444444444432 33456666666666666543 2345555666666
Q ss_pred EEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 353 IRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 353 L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|++++|++.. .+|.. ++.+++|+.|+++.
T Consensus 385 L~l~~n~l~~----~~p~~--~~~~~~L~~L~L~~ 413 (968)
T PLN00113 385 LILFSNSLEG----EIPKS--LGACRSLRRVRLQD 413 (968)
T ss_pred EECcCCEecc----cCCHH--HhCCCCCCEEECcC
Confidence 6666666653 35555 67788888888764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.3e-23 Score=196.24 Aligned_cols=251 Identities=20% Similarity=0.242 Sum_probs=189.0
Q ss_pred EEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCC
Q 016362 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMS 195 (390)
Q Consensus 116 i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~ 195 (390)
+...+...+|+.++.+.+|++|++++|.+..+..++..+ |.|+.+++.+|++.. ..+|+.+..+.-|..||||+|++.
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L-p~LRsv~~R~N~LKn-sGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL-PRLRSVIVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc-hhhHHHhhhcccccc-CCCCchhcccccceeeecchhhhh
Confidence 555677889999999999999999999998877777775 999999999999876 367888889999999999999999
Q ss_pred CccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh
Q 016362 196 KEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI 275 (390)
Q Consensus 196 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 275 (390)
..+..+..-+++-+|+|++|+|.. .+..++-++..|-.|+|+.|.+...+|+ ++.+..|++|+|++|++..+.-
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ----~RRL~~LqtL~Ls~NPL~hfQL- 190 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQ----IRRLSMLQTLKLSNNPLNHFQL- 190 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHH----HHHHhhhhhhhcCCChhhHHHH-
Confidence 877788888999999999999874 4556667888899999999999988775 7888999999999999877553
Q ss_pred hhcCCCCCcCeEecCCCccccccCCCCCch---hhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhccCCC
Q 016362 276 LKLCQIRSLEQLYLNKNNLNRIYYPNNDTI---HELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSLDSFP 348 (390)
Q Consensus 276 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---l~~~~~~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~ 348 (390)
..+..+++|+.|.+++.+-+-.-+|..+.. +..+++|+|.+.- .-.+++|+.|+||+|+|+.... ......
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--~~~~W~ 268 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--TEGEWE 268 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec--cHHHHh
Confidence 456667788888899887666555766432 2334555554433 2235666666666666665431 223445
Q ss_pred CCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEe
Q 016362 349 KLMDIRLSENPVSDPGRGGISRFAIIARLGKIKIL 383 (390)
Q Consensus 349 ~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~L 383 (390)
+|++|++|.|+++. +|.. +.++++|+.|
T Consensus 269 ~lEtLNlSrNQLt~-----LP~a--vcKL~kL~kL 296 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTV-----LPDA--VCKLTKLTKL 296 (1255)
T ss_pred hhhhhccccchhcc-----chHH--HhhhHHHHHH
Confidence 66666666666653 6665 5555555443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-22 Score=188.83 Aligned_cols=233 Identities=26% Similarity=0.251 Sum_probs=124.5
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCC
Q 016362 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLP 202 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~ 202 (390)
||.......+|+.|+|.+|.|+.+..+-...++.|+.|||+.|.++.+.. ..+..-.++++|+|++|+|+.... .|.
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC--CCCCCCCCceEEeecccccccccccccc
Confidence 33333333344444444444444433111222444444444444442110 112222344455555554443332 244
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
.+.+|.+|.|+.|+++. .+...++.+++|+.|+|..|.+.-.... .+.++++|+.|.|..|.+..... ..+..+.
T Consensus 195 ~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~ 269 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDISKLDD-GAFYGLE 269 (873)
T ss_pred ccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhh---hhcCchhhhhhhhhhcCcccccC-cceeeec
Confidence 44455555555555442 2223334455555555555554433221 34445555555555555544433 3444455
Q ss_pred CcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 283 SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++++|+|..|+++.+. -.+.-++.+|++|+||+|.|..+ .++.-..+++|+.|+|+.|.|+.
T Consensus 270 kme~l~L~~N~l~~vn-----------------~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVN-----------------EGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ccceeecccchhhhhh-----------------cccccccchhhhhccchhhhhee-ecchhhhcccceeEecccccccc
Confidence 5555555555555542 12356789999999999999987 34666789999999999999986
Q ss_pred CCCcchhhhhhhhhcCCceEecCcc
Q 016362 363 PGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 363 ~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
-. +.. +..|++|++||+|-
T Consensus 332 l~----~~s--f~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 332 LD----EGS--FRVLSQLEELNLSH 350 (873)
T ss_pred CC----hhH--HHHHHHhhhhcccc
Confidence 32 222 67789999999874
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.5e-22 Score=187.00 Aligned_cols=246 Identities=22% Similarity=0.267 Sum_probs=152.2
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc-CC
Q 016362 122 DKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV-TG 200 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~ 200 (390)
...|..+.+-+++-.|+|++|+|..++..++-.+..|-.|||++|.+. .+|+-+..+.+|++|.|++|.+.-.- ..
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe---~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE---MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh---hcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 556677777777777888888887777766655677777788887776 56677777777888888777653221 13
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
++.+.+|++|.+++++-+...+|..+..+.+|..++++.|.+...+ ..+..+.+|+.|+|++|+|+... ...+.
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP----ecly~l~~LrrLNLS~N~iteL~--~~~~~ 266 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP----ECLYKLRNLRRLNLSGNKITELN--MTEGE 266 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch----HHHhhhhhhheeccCcCceeeee--ccHHH
Confidence 4444455555555544333333333444555555555555554332 13445555555555555555433 12334
Q ss_pred CCCcCeEecCCCccccccCCCCCc---hhhhhhccccc------ccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCc
Q 016362 281 IRSLEQLYLNKNNLNRIYYPNNDT---IHELVSAHESH------EESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLM 351 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~---~l~~~~~~~~~------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~ 351 (390)
+.+|++|+|+.|+++.+ |+..- .++.+....|. .+|++.+-.|+++..++|++.-.| +.++.|++|+
T Consensus 267 W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~ 342 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQ 342 (1255)
T ss_pred Hhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHH
Confidence 44555555555555554 33221 12222222222 234677888999999999888765 7888999999
Q ss_pred EEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 352 DIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 352 ~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.|.|++|.+-+ +|.. |.-++.|++||+.+
T Consensus 343 kL~L~~NrLiT-----LPea--IHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 343 KLKLDHNRLIT-----LPEA--IHLLPDLKVLDLRE 371 (1255)
T ss_pred Hhcccccceee-----chhh--hhhcCCcceeeccC
Confidence 99999998864 7877 88889999988754
No 9
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.81 E-value=7.2e-20 Score=127.67 Aligned_cols=67 Identities=43% Similarity=0.852 Sum_probs=57.8
Q ss_pred CCCEEEeCCCceeeEEEEEeeecCC-CCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccC
Q 016362 11 LGQRVHSANDARRIGTVKYVGEVQG-YSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (390)
Q Consensus 11 ~g~~v~~~~~~~~~~tv~~~g~~~~-~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~ 78 (390)
|||||.+.+.....|||||+|++++ .+|.|+|||||++.|+|||+++|++||+|. +++|.|++++++
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~-~~~G~Fv~~~~v 68 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECP-PNHGIFVRPSKV 68 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SS-TTTEEEEEGGGE
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeC-CCCEEEecHHHC
Confidence 7999999444457799999999994 567999999999899999999999999997 699999999875
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=4.8e-18 Score=170.90 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=35.1
Q ss_pred EEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCC
Q 016362 117 ELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMS 195 (390)
Q Consensus 117 ~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~ 195 (390)
...++..+|..+. .+|+.|.+.+|.++.++. .+++|++|++++|.++.+ |. ..++|+.|++++|.+.
T Consensus 209 s~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL---P~---lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 209 GESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL---PV---LPPGLLELSIFSNPLT 275 (788)
T ss_pred CCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc---cC---cccccceeeccCCchh
Confidence 3344455555443 256666676666665543 236666666666666642 21 1234445555554443
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=5.1e-18 Score=158.05 Aligned_cols=251 Identities=23% Similarity=0.212 Sum_probs=169.6
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCc------chhhhcCcccEEECCCCcCCChHHHHHHHhcCCC---CCEEEcc
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGA------NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPA---LAVLNLS 190 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~---L~~L~ls 190 (390)
+...++..+...+.++.++++++.+...+. .....+++|+.|++++|.+.. ..+..+..+.+ |++|+++
T Consensus 39 ~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ls 116 (319)
T cd00116 39 AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP--DGCGVLESLLRSSSLQELKLN 116 (319)
T ss_pred HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh--hHHHHHHHHhccCcccEEEee
Confidence 345677788888889999999988763221 122235799999999999874 33444444444 9999999
Q ss_pred CCCCCCccC-----CCCCC-CCccEEEeecccCCHHH---HHHHHhcCCcccEEeccCCCccccCC-CCCCccCCCCCcc
Q 016362 191 NNLMSKEVT-----GLPQL-KSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITP-VSSPIVQGFDNLQ 260 (390)
Q Consensus 191 ~n~l~~~~~-----~~~~l-~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~L~ 260 (390)
+|++..... .+..+ ++|+.|++++|.+++.. +...+..+++|++|++++|.+++... .++..+..+++|+
T Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196 (319)
T ss_pred CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC
Confidence 998874211 24456 88999999999988433 33445667789999999998875321 1111244557899
Q ss_pred EEEcCCCCCCCchh--h-hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016362 261 LLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 261 ~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~ 337 (390)
.|++++|.+.+... + ..+..+++|++|++++|.+++.........+ ....+.|++|++++|.+++
T Consensus 197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~------------~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL------------LSPNISLLTLSLSCNDITD 264 (319)
T ss_pred EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH------------hccCCCceEEEccCCCCCc
Confidence 99999999875432 1 3456788999999999998874322211100 1235799999999999984
Q ss_pred ch---hhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhc-CCceEecCc
Q 016362 338 LA---SIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL-GKIKILNGS 386 (390)
Q Consensus 338 ~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l-~~L~~Ln~s 386 (390)
.. ....+..+++|++|++++|++.+.....++.. +-.. +.|+.|++.
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 315 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES--LLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH--HhhcCCchhhcccC
Confidence 32 22456677899999999999986432223322 4444 677777764
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=8.3e-18 Score=156.63 Aligned_cols=246 Identities=24% Similarity=0.212 Sum_probs=126.8
Q ss_pred HHHhccccccEeecCCcccCCCCc----chhhhcCcccEEECCCCcCC----ChHHHHHHHhcCCCCCEEEccCCCCCCc
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLS----DWKDIGAFGEQLPALAVLNLSNNLMSKE 197 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~l~----~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 197 (390)
..+..+..|+.++++++.++.... ......++++.|+++++.+. .+..++..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 344445556677777666644322 12222355667777666554 1334455566666777777776666533
Q ss_pred cC-CCCCC---CCccEEEeecccCCHHHHHH---HHhcC-CcccEEeccCCCccccCC-CCCCccCCCCCccEEEcCCCC
Q 016362 198 VT-GLPQL---KSIRILVLNCTGVNWMQVEI---LKHSL-PALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDNC 268 (390)
Q Consensus 198 ~~-~~~~l---~~L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~L~~L~L~~n~ 268 (390)
.+ .+..+ ++|++|++++|.++...... .+..+ ++|++|++++|.+++... .+...+..++.|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 22 22222 33777777776665322222 23344 666777777776663210 011133445567777777776
Q ss_pred CCCchh--h-hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc
Q 016362 269 IAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD 345 (390)
Q Consensus 269 l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~ 345 (390)
+++... + ..+..+++|++|++++|.+++....... ..+..+++|++|++++|.++++.. ..+.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------~~~~~~~~L~~L~ls~n~l~~~~~-~~l~ 242 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------------ETLASLKSLEVLNLGDNNLTDAGA-AALA 242 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------------HHhcccCCCCEEecCCCcCchHHH-HHHH
Confidence 664211 0 2233445677777777766543211100 003445667777777776665322 1221
Q ss_pred -----CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 346 -----SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 346 -----~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
..+.|++|++++|.+++.....++.. +..+++|+.|+++.
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~--~~~~~~L~~l~l~~ 287 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEV--LAEKESLLELDLRG 287 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHH--HhcCCCccEEECCC
Confidence 13567777777776654332233333 55556666666653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.1e-20 Score=169.72 Aligned_cols=86 Identities=30% Similarity=0.362 Sum_probs=40.9
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC
Q 016362 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN 333 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 333 (390)
.++..|..|++..|.|...+. ..+.++++|..|+|+.|+++.+ |+. +.-+++|++||+|+|
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpa-e~~~~L~~l~vLDLRdNklke~--Pde----------------~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPA-EHLKHLNSLLVLDLRDNKLKEV--PDE----------------ICLLRSLERLDLSNN 285 (565)
T ss_pred CccHHHHHHHhcccHHHhhHH-HHhcccccceeeeccccccccC--chH----------------HHHhhhhhhhcccCC
Confidence 334444444444444444332 3333445555555555555544 443 333455555555555
Q ss_pred CCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 334 MIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 334 ~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
.|++.+ -.++++ +|+.|-+.|||+.
T Consensus 286 ~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 286 DISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ccccCC--cccccc-eeeehhhcCCchH
Confidence 555544 245555 5555555555554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.5e-20 Score=166.62 Aligned_cols=240 Identities=22% Similarity=0.283 Sum_probs=150.1
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCC
Q 016362 122 DKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGL 201 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 201 (390)
..+.+.+.++..|..+++.+|.++..++++... ..++.++.++|.++ .+|..+..+++|..|+++.|.+...++++
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l-~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLSQLPAAIGEL-EALKSLNVSHNKLS---ELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred hhccHhhhcccceeEEEeccchhhhCCHHHHHH-HHHHHhhcccchHh---hccHHHhhhhhhhhhhccccceeecCchH
Confidence 334455566666666666666666666666654 66666666666665 45666666666666666666666666666
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016362 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
+.+..|..|+..+|+++ ..+..+..+.+|..+++.+|.++..++. .-+++.|++||...|-++..|+ .++.+
T Consensus 134 ~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L~~ld~~~N~L~tlP~--~lg~l 205 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRLKHLDCNSNLLETLPP--ELGGL 205 (565)
T ss_pred HHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHH----HHHHHHHHhcccchhhhhcCCh--hhcch
Confidence 66666666666666665 3343445555566666666666555443 2225556666666665555552 45555
Q ss_pred CCcCeEecCCCccccccCCCC--CchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016362 282 RSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~--~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
.+|..|+|..|+|..+ |+. .+.+..+..++|.++- ...+++|.+|||.+|++++.| +.+..+.+|++||
T Consensus 206 ~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~clLrsL~rLD 281 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEICLLRSLERLD 281 (565)
T ss_pred hhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHHHhhhhhhhc
Confidence 6666666666666555 322 1223334444443222 346788889999999999876 6788888899999
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 355 LSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+++|.|+. +|.. ++.+ +|+.|-+
T Consensus 282 lSNN~is~-----Lp~s--Lgnl-hL~~L~l 304 (565)
T KOG0472|consen 282 LSNNDISS-----LPYS--LGNL-HLKFLAL 304 (565)
T ss_pred ccCCcccc-----CCcc--cccc-eeeehhh
Confidence 99999885 6665 7777 7776644
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=4e-17 Score=164.27 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=120.5
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016362 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
.++|+.|++++|.++.++. ..++|+.|++++|.++. +|... .+|+.|++++|+++..+. ..++|+.|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~---Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~L 307 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH---LPALP---SGLCKLWIFGNQLTSLPV---LPPGLQEL 307 (788)
T ss_pred CCCCcEEEecCCccCcccC----cccccceeeccCCchhh---hhhch---hhcCEEECcCCccccccc---ccccccee
Confidence 5789999999999987753 23678888888887774 33321 345555555555553322 12445555
Q ss_pred EeecccCCHH------------------HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCc
Q 016362 211 VLNCTGVNWM------------------QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 211 ~L~~n~l~~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 272 (390)
++++|.+... .++.+ ..+|+.|++++|+++.++.. ..+|+.|++++|.++.+
T Consensus 308 dLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l-------p~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 308 SVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL-------PSELYKLWAYNNRLTSL 377 (788)
T ss_pred ECCCCccccCCCCcccccccccccCcccccccc---ccccceEecCCCccCCCCCC-------CcccceehhhccccccC
Confidence 5555554420 11111 12455666666665544321 13455555666655554
Q ss_pred hhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCchhhhhccCCCCCc
Q 016362 273 SEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDLASIDSLDSFPKLM 351 (390)
Q Consensus 273 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~ 351 (390)
+. ..++|+.|++++|.|+.+ |.....++.+++++|.+..+.. ..+|+.|++++|+|+.+| +.+..+++|+
T Consensus 378 P~-----l~~~L~~LdLs~N~Lt~L--P~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP--~sl~~L~~L~ 448 (788)
T PRK15387 378 PA-----LPSGLKELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLP--ESLIHLSSET 448 (788)
T ss_pred cc-----cccccceEEecCCcccCC--CCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccC--hHHhhccCCC
Confidence 32 124677777777777765 4444556666777776665443 246777888888887765 5677788888
Q ss_pred EEEccCCCCCC
Q 016362 352 DIRLSENPVSD 362 (390)
Q Consensus 352 ~L~l~~n~l~~ 362 (390)
.|+|++|+++.
T Consensus 449 ~LdLs~N~Ls~ 459 (788)
T PRK15387 449 TVNLEGNPLSE 459 (788)
T ss_pred eEECCCCCCCc
Confidence 88888888874
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2.5e-18 Score=169.06 Aligned_cols=214 Identities=24% Similarity=0.276 Sum_probs=132.8
Q ss_pred ccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEee
Q 016362 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLN 213 (390)
Q Consensus 134 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~ 213 (390)
|+.++++.+.++..+. ....|.+|+.++...|.++ .+|..+....+|+.|.+..|.+...++...++++|++|+|.
T Consensus 243 l~~~dis~n~l~~lp~-wi~~~~nle~l~~n~N~l~---~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPE-WIGACANLEALNANHNRLV---ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchhhhhcchH-HHHhcccceEecccchhHH---hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 4444444444444442 2222355555555555543 34444445555555555555555445555678888888888
Q ss_pred cccCCHHHHHHHH-------------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC
Q 016362 214 CTGVNWMQVEILK-------------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC 268 (390)
Q Consensus 214 ~n~l~~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~ 268 (390)
.|.+... +..++ ..++.|+.|++.+|.+++...+ .+.+++.|+.|+|++|+
T Consensus 319 ~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 319 SNNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hcccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh---hhccccceeeeeecccc
Confidence 8876521 11110 0123477788888888776433 57788999999999999
Q ss_pred CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh---hhhhcccccccCC---CCCCCCCEEeCCCCCCCCchhhh
Q 016362 269 IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH---ELVSAHESHEESY---LPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 269 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l---~~~~~~~~~~~~~---~~l~~L~~L~Ls~N~i~~~~~~~ 342 (390)
+..++. ..+.++..|++|+|++|+++.+ |+....+ +.+..++|.+..+ ..++.|+.+|+|.|+++......
T Consensus 395 L~~fpa-s~~~kle~LeeL~LSGNkL~~L--p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPA-SKLRKLEELEELNLSGNKLTTL--PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCH-HHHhchHHhHHHhcccchhhhh--hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh
Confidence 999887 6788999999999999999998 6553332 3344455544443 34667777777777777654332
Q ss_pred hccCCCCCcEEEccCCC
Q 016362 343 SLDSFPKLMDIRLSENP 359 (390)
Q Consensus 343 ~l~~l~~L~~L~l~~n~ 359 (390)
.+.. |+|++||++||.
T Consensus 472 ~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hCCC-cccceeeccCCc
Confidence 2222 677777777776
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=2.1e-18 Score=154.93 Aligned_cols=241 Identities=22% Similarity=0.212 Sum_probs=155.1
Q ss_pred eEEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccC-C
Q 016362 114 VSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN-N 192 (390)
Q Consensus 114 ~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~-n 192 (390)
+.....|...+|..+.. ...++.|..|.|+.+++..+..+++|+.|||++|.|+.+ -|++|..++.|..|-+.+ |
T Consensus 51 VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCC
Confidence 33444566666644322 356778888888888885555568888888888888863 367888888877666655 7
Q ss_pred CCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC-
Q 016362 193 LMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA- 270 (390)
Q Consensus 193 ~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~- 270 (390)
+|+.... .|.++..|+.|.++-|++.. .....+..+++|..|.+.+|.+..+... .+..+..++++.+..|.+.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCcccc
Confidence 8876665 47788888888888887775 3455557778888888887777655443 3444444454444444310
Q ss_pred ------------------------------------------------------------CchhhhhcCCCCCcCeEecC
Q 016362 271 ------------------------------------------------------------EWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 271 ------------------------------------------------------------~~~~~~~l~~l~~L~~L~L~ 290 (390)
..-+...+..+++|++|+|+
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 00122346778889999999
Q ss_pred CCccccccCCCC---CchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 291 KNNLNRIYYPNN---DTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 291 ~n~l~~~~~~~~---~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+|+|+.+. +.. ++.++.+.+..|.+.. +..++.|++|+|.+|+|+.+ .+..|..+..|.+|++-.||+.-
T Consensus 283 nN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 283 NNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-ecccccccceeeeeehccCcccC
Confidence 99888874 222 1223344444444333 34567777777777777765 33466667777777777777765
Q ss_pred CC
Q 016362 363 PG 364 (390)
Q Consensus 363 ~~ 364 (390)
++
T Consensus 361 nC 362 (498)
T KOG4237|consen 361 NC 362 (498)
T ss_pred cc
Confidence 44
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.68 E-value=2.2e-17 Score=137.55 Aligned_cols=136 Identities=34% Similarity=0.486 Sum_probs=67.0
Q ss_pred hcCCcccEEeccCCCccccCCCCCCccC-CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCch
Q 016362 227 HSLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTI 305 (390)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 305 (390)
.+..++++|+|.+|.++.+.. ++ .+.+|+.|+|++|.|+.... +..+++|++|++++|.|+++. ...
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i~--~~l-- 83 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSIS--EGL-- 83 (175)
T ss_dssp --------------------S-------TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-C--HHH--
T ss_pred ccccccccccccccccccccc-----hhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCccc--cch--
Confidence 344578999999999987642 44 46889999999999998654 677899999999999999873 110
Q ss_pred hhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 306 HELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 306 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
...+++|++|+|++|+|.++..+..++.+|+|+.|++.+||+.+. ...+.+++..+|+|+.||+
T Consensus 84 -------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 -------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETT
T ss_pred -------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCC
Confidence 135799999999999999998888899999999999999999863 4778889999999999999
Q ss_pred cccCC
Q 016362 386 SEVNS 390 (390)
Q Consensus 386 s~i~~ 390 (390)
..|++
T Consensus 148 ~~V~~ 152 (175)
T PF14580_consen 148 QDVTE 152 (175)
T ss_dssp EETTS
T ss_pred EEccH
Confidence 99874
No 19
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.1e-16 Score=128.56 Aligned_cols=72 Identities=43% Similarity=0.794 Sum_probs=64.4
Q ss_pred CCCCCEEEeC--CCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 9 YKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 9 ~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
..||.|-++. +...+.|||||+|+.++.+|.|+||+||+|.|||||+++|++||.|.+ ++|+|++|..+..+
T Consensus 149 i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p-~yGgfVrP~~V~Vg 222 (234)
T KOG3206|consen 149 IAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAP-KYGGFVRPRAVTVG 222 (234)
T ss_pred cccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCC-ccCCccccceeeec
Confidence 6799886654 544467999999999999999999999999999999999999999875 99999999998877
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=1.9e-16 Score=160.22 Aligned_cols=110 Identities=24% Similarity=0.225 Sum_probs=58.5
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
++..+|..+. +.|+.|++++|.+..++..+. ++|++|++++|.++. +|..+. ++|+.|++++|.+...+.
T Consensus 189 ~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lts---LP~~l~--~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTS---IPATLP--DTIQEMELSINRITELPE 258 (754)
T ss_pred CcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCcccc---CChhhh--ccccEEECcCCccCcCCh
Confidence 3444444332 356677777777766554332 467777777776663 333221 356666666666654333
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcccc
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEI 245 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 245 (390)
.+. .+|+.|++++|.+.. ++..+ .++|+.|++++|.++.+
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~--LP~~l--~~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISC--LPENL--PEELRYLSVYDNSIRTL 298 (754)
T ss_pred hHh--CCCCEEECcCCccCc--ccccc--CCCCcEEECCCCccccC
Confidence 332 356666666665552 22211 23566666666666544
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=5.1e-18 Score=166.93 Aligned_cols=136 Identities=27% Similarity=0.369 Sum_probs=77.8
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+..+++|+.|+|++|++.. .+...+.++..|++|+|++|+++.++. .+..+..|++|....|.+..+| .+.+
T Consensus 379 l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~~Lp~----tva~~~~L~tL~ahsN~l~~fP---e~~~ 450 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLTTLPD----TVANLGRLHTLRAHSNQLLSFP---ELAQ 450 (1081)
T ss_pred hccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhhhhhH----HHHhhhhhHHHhhcCCceeech---hhhh
Confidence 3344555555555554442 223333444555555555555554432 2444455555555555555544 2456
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016362 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
++.|+.+|++.|+|+.+..+.. .+-++|++|||++|.-... ....|..+.++...++.-++.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~-----------------~p~p~LkyLdlSGN~~l~~-d~~~l~~l~~l~~~~i~~~~~ 512 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEA-----------------LPSPNLKYLDLSGNTRLVF-DHKTLKVLKSLSQMDITLNNT 512 (1081)
T ss_pred cCcceEEecccchhhhhhhhhh-----------------CCCcccceeeccCCccccc-chhhhHHhhhhhheecccCCC
Confidence 6777777777777766654442 2348999999999964433 225666777777777777754
Q ss_pred CC
Q 016362 361 SD 362 (390)
Q Consensus 361 ~~ 362 (390)
.+
T Consensus 513 ~d 514 (1081)
T KOG0618|consen 513 PD 514 (1081)
T ss_pred Cc
Confidence 43
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=5.1e-15 Score=159.00 Aligned_cols=251 Identities=17% Similarity=0.080 Sum_probs=165.9
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
.+..++..+..+++|+.++++++......+.+.. +++|++|+|++|.... .+|..+..+++|+.|++++|..-...|
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~-l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM-ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCcccc-CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC
Confidence 3455666677899999999988753333334444 5899999999876543 788889999999999999875333444
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC--------------------------Ccc
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS--------------------------PIV 253 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~l 253 (390)
....+++|+.|++++|.... .++. ...+|++|++.+|.+..++.... ...
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~-~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLK-SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCcc-cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 33378899999998875322 2222 24578888888887765442100 000
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCC--Cchhhhhhccccc-ccCC-CCCCCCCEE
Q 016362 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNN--DTIHELVSAHESH-EESY-LPFQNLCCL 328 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~--~~~l~~~~~~~~~-~~~~-~~l~~L~~L 328 (390)
...++|+.|+|++|......+ ..++++++|+.|++++|. +..+ |.. ...++.++++++. +..+ ....+|++|
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~L--P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETL--PTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred hccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCee--CCCCCccccCEEECCCCCccccccccccccCEe
Confidence 112467888888886433222 457888999999999874 5555 432 3344555555432 1111 224688999
Q ss_pred eCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCccc
Q 016362 329 LLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 329 ~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
+|++|.|+.+| ..+..+++|+.|++++|+-.. .++.. +.++++|+.|+++.+
T Consensus 852 ~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~----~l~~~--~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQ----RVSLN--ISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccCh--HHHhcCCCCCEEECCCCCCcC----ccCcc--cccccCCCeeecCCC
Confidence 99999998876 568889999999999976432 24444 567777777776654
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=4.4e-15 Score=150.33 Aligned_cols=202 Identities=22% Similarity=0.251 Sum_probs=138.3
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
.+.+.|.++++.++.++..+. ++|+.|+|++|.++. +|..+ .++|++|++++|+++..+..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~Lts---LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP---EQITTLILDNNELKS---LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc---cCCcEEEecCCCCCc---CChhh--ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 456889999999998776542 689999999999985 55544 3699999999999986644443 4799999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
|++|.+. .++..+ ..+|+.|++++|.++.++.. +. ++|+.|++++|.++..+. .+ .++|+.|++++
T Consensus 248 Ls~N~L~--~LP~~l--~s~L~~L~Ls~N~L~~LP~~----l~--~sL~~L~Ls~N~Lt~LP~--~l--p~sL~~L~Ls~ 313 (754)
T PRK15370 248 LSINRIT--ELPERL--PSALQSLDLFHNKISCLPEN----LP--EELRYLSVYDNSIRTLPA--HL--PSGITHLNVQS 313 (754)
T ss_pred CcCCccC--cCChhH--hCCCCEEECcCCccCccccc----cC--CCCcEEECCCCccccCcc--cc--hhhHHHHHhcC
Confidence 9999987 344333 25799999999999976543 22 579999999999987653 11 13567777777
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCC--CCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 292 NNLNRIYYPNNDTIHELVSAHESHEESYLP--FQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 292 n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|.++.+. +.....++.|+++.|.+..+.. .++|+.|++++|+|+.++ ..+ .++|+.|+|++|.+..
T Consensus 314 N~Lt~LP-~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP--~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 314 NSLTALP-ETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLP--ETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred CccccCC-ccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCC--hhh--cCCcCEEECCCCcCCC
Confidence 7776552 1122345555555555444321 246777777777766544 222 2466666666666653
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=133.87 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=143.9
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+-++.+++.|.+++|.++.+++.++.+ .+|+.|++++|++. ++|..++.+++|+.|+++-|++...+..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhh---hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 446778889999999999999999986 99999999999998 68899999999999999999998776689999999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
+.|+|..|.++...++.-+-.+..|+.|++++|.+.-+++. ++.+++|+.|.+..|.+-+.+. .++.+..|++|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d----vg~lt~lqil~lrdndll~lpk--eig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD----VGKLTNLQILSLRDNDLLSLPK--EIGDLTRLREL 178 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh----hhhhcceeEEeeccCchhhCcH--HHHHHHHHHHH
Confidence 99999999988766666666778899999999999887765 8999999999999999988874 68899999999
Q ss_pred ecCCCccccc
Q 016362 288 YLNKNNLNRI 297 (390)
Q Consensus 288 ~L~~n~l~~~ 297 (390)
.+.+|+++-+
T Consensus 179 hiqgnrl~vl 188 (264)
T KOG0617|consen 179 HIQGNRLTVL 188 (264)
T ss_pred hcccceeeec
Confidence 9999999988
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=3e-14 Score=153.19 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=148.3
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEe
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 212 (390)
.|+.|.+.++.+...+..+. +.+|+.|++.+|.+. .++..+..+++|+.|+++++......|.+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~--~~~L~~L~L~~s~l~---~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFR--PENLVKLQMQGSKLE---KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCC--ccCCcEEECcCcccc---ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 35666666666655554442 378888888888876 4566677889999999988764455667888899999999
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCC-CchhhhhcCCCCCcCeEecC
Q 016362 213 NCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIA-EWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 213 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L~ 290 (390)
++|..-. .++..+..+++|+.|++++|. ++.++. .+ ++++|+.|++++|... .++. ..++|+.|+++
T Consensus 665 ~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~----~i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~ 733 (1153)
T PLN03210 665 SDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPT----GI-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLD 733 (1153)
T ss_pred cCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCC----cC-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecC
Confidence 8875432 456666888999999998875 343332 22 6788999999888532 2221 24678888998
Q ss_pred CCccccccCCCC--Cchhhhhhccccccc------------CCCCCCCCCEEeCCCCC-CCCchhhhhccCCCCCcEEEc
Q 016362 291 KNNLNRIYYPNN--DTIHELVSAHESHEE------------SYLPFQNLCCLLLGNNM-IEDLASIDSLDSFPKLMDIRL 355 (390)
Q Consensus 291 ~n~l~~~~~~~~--~~~l~~~~~~~~~~~------------~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~l 355 (390)
+|.++.+ |.. ...+..|.++..... ....+++|+.|+|++|. +..+| ..+..+++|+.|++
T Consensus 734 ~n~i~~l--P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~L 809 (1153)
T PLN03210 734 ETAIEEF--PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEI 809 (1153)
T ss_pred CCccccc--cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEEC
Confidence 8888766 432 223333333321100 01124678888888884 44444 46778888888888
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCccc
Q 016362 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
++|+... .+|.. + .+++|+.|+++.+
T Consensus 810 s~C~~L~----~LP~~--~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 810 ENCINLE----TLPTG--I-NLESLESLDLSGC 835 (1153)
T ss_pred CCCCCcC----eeCCC--C-CccccCEEECCCC
Confidence 8876432 34543 2 4666666666643
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=7.1e-18 Score=135.33 Aligned_cols=183 Identities=27% Similarity=0.300 Sum_probs=152.1
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcC
Q 016362 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSL 229 (390)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 229 (390)
.++. +.+++.|-|++|.++ .+|..+..+.+|+.|++++|++...+..++.+++|+.|+++-|++. .++.-++.+
T Consensus 28 gLf~-~s~ITrLtLSHNKl~---~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFN-MSNITRLTLSHNKLT---VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSF 101 (264)
T ss_pred cccc-hhhhhhhhcccCcee---ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCC
Confidence 3444 378899999999998 5788889999999999999999988889999999999999999887 567777999
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016362 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~ 309 (390)
|.|+.|++++|++..... +..+..+..|+.|.|++|.+.-.++ .++++++|+.|.++.|.+-.+ |..
T Consensus 102 p~levldltynnl~e~~l--pgnff~m~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~l--pke------- 168 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSL--PGNFFYMTTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSL--PKE------- 168 (264)
T ss_pred chhhhhhccccccccccC--CcchhHHHHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhC--cHH-------
Confidence 999999999999976532 2246667889999999999998874 689999999999999999887 666
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC---CCCCcEEEccCCCCCC
Q 016362 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS---FPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~---l~~L~~L~l~~n~l~~ 362 (390)
+..+..|++|.+.+|+++-+|. .++. ..+=+.+.+.+||+..
T Consensus 169 ---------ig~lt~lrelhiqgnrl~vlpp--el~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 169 ---------IGDLTRLRELHIQGNRLTVLPP--ELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ---------HHHHHHHHHHhcccceeeecCh--hhhhhhhhhhHHHHhhhhCCCCC
Confidence 5667899999999999998753 3443 2344567788898864
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-16 Score=143.74 Aligned_cols=230 Identities=22% Similarity=0.228 Sum_probs=170.0
Q ss_pred ceEEEEeChhHHH-HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCC-CcCCChH------------------
Q 016362 113 HVSIELVGKDKIQ-DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTG-NLLSDWK------------------ 172 (390)
Q Consensus 113 ~~~i~~~g~~~i~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~-n~l~~~~------------------ 172 (390)
.++++.-++..|| .+|+.+++|+.|+|++|.|+.+.++.+..++++..|-+.+ |.|+.+.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 3556666777787 5789999999999999999999986665568877766655 7777532
Q ss_pred ----HHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeeccc------CCHHH--------------------
Q 016362 173 ----DIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTG------VNWMQ-------------------- 221 (390)
Q Consensus 173 ----~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~------l~~~~-------------------- 221 (390)
...+.+..+++|..|.+.+|.+..... .+..+..++++.+..|. +.|..
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 112445566777777777777765544 46677777777766654 11110
Q ss_pred -----------------------------------HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCC
Q 016362 222 -----------------------------------VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266 (390)
Q Consensus 222 -----------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~ 266 (390)
+...++.+++|+.|+|++|+++.+... ++.....++.|.|..
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~---aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG---AFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh---hhcchhhhhhhhcCc
Confidence 344567889999999999999998766 788889999999999
Q ss_pred CCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch----hhh
Q 016362 267 NCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA----SID 342 (390)
Q Consensus 267 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~ 342 (390)
|++..+.. ..+..+..|+.|+|.+|+|+.+. |.. |..+..|.+|+|-.|.+.--. ..+
T Consensus 308 N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~-~~a----------------F~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 308 NKLEFVSS-GMFQGLSGLKTLSLYDNQITTVA-PGA----------------FQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred chHHHHHH-HhhhccccceeeeecCCeeEEEe-ccc----------------ccccceeeeeehccCcccCccchHHHHH
Confidence 99988776 67889999999999999999985 444 778899999999999886211 112
Q ss_pred hcc-----------CCCCCcEEEccCCCCCCC
Q 016362 343 SLD-----------SFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 343 ~l~-----------~l~~L~~L~l~~n~l~~~ 363 (390)
.+. +--.++.+.++...+.+-
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~ 401 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDF 401 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhcccccc
Confidence 232 112477888888888753
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-15 Score=135.51 Aligned_cols=228 Identities=19% Similarity=0.155 Sum_probs=118.6
Q ss_pred hHHHHHHhccccccEeecCCcccCCC----Cc------chhhhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEc
Q 016362 122 DKIQDKFSKFEELTSAALPYLGVSSP----GA------NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNL 189 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~i~~~----~~------~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~l 189 (390)
+.+.+.+...++|+..++++-..+-. ++ .....+++|++|+||+|-+.. ++.+-..+..+..|++|.+
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 34555666666666666655432221 11 111123566666666666542 3344455556666666666
Q ss_pred cCCCCCCccC--------------CCCCCCCccEEEeecccCCH---HHHHHHHhcCCcccEEeccCCCccccCC-CCCC
Q 016362 190 SNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNW---MQVEILKHSLPALEELHLMGNSISEITP-VSSP 251 (390)
Q Consensus 190 s~n~l~~~~~--------------~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 251 (390)
.+|.+..... ..+.-+.|+++...+|++.. ..+...++..+.|+++.++.|.+..... ....
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~e 207 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAE 207 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHH
Confidence 6666543211 12234566666666666542 1233444555666666666666543221 1112
Q ss_pred ccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEE
Q 016362 252 IVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCL 328 (390)
Q Consensus 252 ~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 328 (390)
.+..+++|+.|||.+|-++....+ ..+..+++|+.|++++|.+..-+.-.....+ ....++|++|
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al------------~~~~p~L~vl 275 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL------------KESAPSLEVL 275 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH------------hccCCCCcee
Confidence 345566667777777666543332 3345566666777776666654322221111 1235667777
Q ss_pred eCCCCCCCCchh---hhhccCCCCCcEEEccCCCCC
Q 016362 329 LLGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 329 ~Ls~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~ 361 (390)
.|.+|.|+.-.. ...+...|.|..|+|++|.+.
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 777776663211 123344666777777777664
No 29
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.50 E-value=3.4e-14 Score=129.41 Aligned_cols=68 Identities=37% Similarity=0.763 Sum_probs=61.8
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeecc
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~ 77 (390)
|-.+.|||||.+.+ ..|||||+|.+....|+|+|||.|+|.||+||+++|+|||+|.. ..|.|+|+..
T Consensus 1 Ms~lSv~D~Vll~~---~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk-~~giFir~~~ 68 (669)
T COG5244 1 MSLLSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKK-RHGIFIRPDD 68 (669)
T ss_pred CceeecCCEEEecc---ccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecC-CcceEEecCc
Confidence 34578999999955 56999999999999999999999999999999999999999987 7899999764
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.45 E-value=8.3e-14 Score=123.93 Aligned_cols=267 Identities=20% Similarity=0.199 Sum_probs=186.7
Q ss_pred EeecCCcceEEEEeCh-hHHHHHHhccccccEeecCCcccCCCCc-----chhhhcCcccEEECCCCcCCC-hHHHH---
Q 016362 106 VLSASNKHVSIELVGK-DKIQDKFSKFEELTSAALPYLGVSSPGA-----NIGTIVTNLKELDLTGNLLSD-WKDIG--- 175 (390)
Q Consensus 106 ~~~~~~~~~~i~~~g~-~~i~~~~~~l~~L~~L~l~~~~i~~~~~-----~~~~~~~~L~~L~L~~n~l~~-~~~~~--- 175 (390)
..++.++++.++.... +.+-+.+..+..++.++|++|.++.... .+.. -++|+..++++-.... ..++|
T Consensus 3 ~~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e~L 81 (382)
T KOG1909|consen 3 FFSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPEAL 81 (382)
T ss_pred eeccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhh-cccceeeehHhhhcCCcHHHHHHHH
Confidence 3456677666664333 4455677889999999999999876433 2233 2677777776643211 12333
Q ss_pred ----HHHhcCCCCCEEEccCCCCCCccC-C----CCCCCCccEEEeecccCCHHHHH------------HHHhcCCcccE
Q 016362 176 ----AFGEQLPALAVLNLSNNLMSKEVT-G----LPQLKSIRILVLNCTGVNWMQVE------------ILKHSLPALEE 234 (390)
Q Consensus 176 ----~~l~~l~~L~~L~ls~n~l~~~~~-~----~~~l~~L~~L~L~~n~l~~~~~~------------~~~~~l~~L~~ 234 (390)
+.+..+|+|++|+||+|.+....+ . +.++..|++|+|.+|.+....-. ..++.-+.|+.
T Consensus 82 ~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 82 KMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred HHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 455678899999999999875433 2 45799999999999998632221 22344568999
Q ss_pred EeccCCCccccCCC-CCCccCCCCCccEEEcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 235 LHLMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 235 L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
+...+|.+...... +...++..+.|+.+.++.|.|..-.- ...+..+++|+.|+|+.|-++..+....+.
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak------ 235 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK------ 235 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH------
Confidence 99999988654321 22345667899999999998864332 156789999999999999998653211111
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchh---hhhcc-CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLAS---IDSLD-SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
.+..+++|++|++++|.+..-.. .+.+. ..|+|+.|++.+|.|+.+....+.. +++..|.|..||++
T Consensus 236 -------aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 236 -------ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLN 306 (382)
T ss_pred -------HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCC
Confidence 14567899999999999985332 24444 5899999999999998765333444 47889999999988
Q ss_pred cc
Q 016362 387 EV 388 (390)
Q Consensus 387 ~i 388 (390)
..
T Consensus 307 gN 308 (382)
T KOG1909|consen 307 GN 308 (382)
T ss_pred cc
Confidence 64
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.44 E-value=1.2e-14 Score=126.68 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=147.5
Q ss_pred HHHHHhccccccEeecCCcc--c--CCCCc-----chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCC
Q 016362 124 IQDKFSKFEELTSAALPYLG--V--SSPGA-----NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~--i--~~~~~-----~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l 194 (390)
+...+..+..|..|..++.. + +.+.+ .+.. +.+|+.+.++.+.-.. +.+....=|.|+++.+....+
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~-f~~l~~~~~s~~~~~~---i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNA-FRNLKTLKFSALSTEN---IVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHH-hhhhheeeeeccchhh---eeceeecCchhheeeeecccc
Confidence 34445556666666665532 1 11111 2333 3778888888776442 222233346677777665444
Q ss_pred CCcc---C---------------------CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC
Q 016362 195 SKEV---T---------------------GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS 250 (390)
Q Consensus 195 ~~~~---~---------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 250 (390)
+... | .+.....|++|+|++|.++ .+.....-.|.++.|++++|.++.+.
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~---- 323 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQ---- 323 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeeh----
Confidence 3210 0 1224567889999999887 56666678899999999999998775
Q ss_pred CccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeC
Q 016362 251 PIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (390)
Q Consensus 251 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 330 (390)
.+..+++|+.|||++|.++.... .-.++.++++|.|++|.|.++. |...+.+|..||+
T Consensus 324 -nLa~L~~L~~LDLS~N~Ls~~~G--wh~KLGNIKtL~La~N~iE~LS-------------------GL~KLYSLvnLDl 381 (490)
T KOG1259|consen 324 -NLAELPQLQLLDLSGNLLAECVG--WHLKLGNIKTLKLAQNKIETLS-------------------GLRKLYSLVNLDL 381 (490)
T ss_pred -hhhhcccceEeecccchhHhhhh--hHhhhcCEeeeehhhhhHhhhh-------------------hhHhhhhheeccc
Confidence 36778999999999998876553 2236788999999999988762 2567889999999
Q ss_pred CCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 331 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 331 s~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++|+|.....+..++++|.|+.|.|.+||+..
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999998888889999999999999999985
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=2e-14 Score=135.14 Aligned_cols=196 Identities=21% Similarity=0.280 Sum_probs=129.1
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016362 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 130 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+..-...+++.|.+..++.++..+ ..|+.+.|+.|.+. .+|..+.++..|.+|+++.|+++..+..+..|+ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f-~~Le~liLy~n~~r---~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAF-VSLESLILYHNCIR---TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccccCchHHHHH-HHHHHHHHHhccce---ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 4455556777888887777666553 67777778777776 466777778888888888888876655554443 777
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016362 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|.+++|+++ .++.-++..+.|..|+.+.|.+...++. ++.+.+|+.|++..|++..+++ .+..+ .|..|++
T Consensus 148 li~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsq----l~~l~slr~l~vrRn~l~~lp~--El~~L-pLi~lDf 218 (722)
T KOG0532|consen 148 LIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQ----LGYLTSLRDLNVRRNHLEDLPE--ELCSL-PLIRLDF 218 (722)
T ss_pred EEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHH----hhhHHHHHHHHHhhhhhhhCCH--HHhCC-ceeeeec
Confidence 777777776 3343345667777777777777766543 6666777777777777777664 33433 4677777
Q ss_pred CCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc---CCCCCcEEEccCCC
Q 016362 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD---SFPKLMDIRLSENP 359 (390)
Q Consensus 290 ~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~---~l~~L~~L~l~~n~ 359 (390)
+.|+++.+ |.. |..++.|++|-|.+|.++..+. .++ ...-.++|+.+-|.
T Consensus 219 ScNkis~i--Pv~----------------fr~m~~Lq~l~LenNPLqSPPA--qIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKISYL--PVD----------------FRKMRHLQVLQLENNPLQSPPA--QICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCceeec--chh----------------hhhhhhheeeeeccCCCCCChH--HHHhccceeeeeeecchhcc
Confidence 77777776 555 5666777777777777776432 221 23334566666663
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=3.5e-13 Score=117.68 Aligned_cols=133 Identities=28% Similarity=0.336 Sum_probs=116.5
Q ss_pred hcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCccc
Q 016362 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALE 233 (390)
Q Consensus 154 ~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 233 (390)
....|+++||++|.++ .+-..+.-.|.++.|++|.|.+... ..++.+++|+.|+|++|.++ .+..+-..+.+++
T Consensus 282 TWq~LtelDLS~N~I~---~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT---QIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA--ECVGWHLKLGNIK 355 (490)
T ss_pred hHhhhhhccccccchh---hhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH--hhhhhHhhhcCEe
Confidence 3478999999999998 4556777889999999999999744 45889999999999999887 5666667889999
Q ss_pred EEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016362 234 ELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 234 ~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
.|.|+.|.+.+.. .++.+.+|..||+++|+|.....+..++++|.|+++.|.+|.+..+
T Consensus 356 tL~La~N~iE~LS-----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhhh-----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999998764 4678899999999999999998888999999999999999999876
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.31 E-value=3.1e-12 Score=124.83 Aligned_cols=72 Identities=42% Similarity=0.756 Sum_probs=66.5
Q ss_pred CCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccC
Q 016362 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~ 78 (390)
+|..++||+||.+.|. ...|||-|+|...+..|.|+||-.|+|.||++|++.|.+||.|.. +.|-|||++.+
T Consensus 2 s~r~lkvG~RVevtgk-nl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~-ncG~FVr~sq~ 73 (1243)
T KOG0971|consen 2 SPRSLKVGTRVEVTGK-NLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDE-NCGVFVRSSQV 73 (1243)
T ss_pred CCccccccceEEeccC-CccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCC-CcceEeehhhh
Confidence 5789999999998765 366999999999999999999999999999999999999999986 89999999874
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=9.1e-13 Score=109.87 Aligned_cols=136 Identities=24% Similarity=0.290 Sum_probs=49.3
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+.+..++++|+|.+|.++ .+..+...+.+|+.|++++|.++.+. .+..++.|++|++++|.|++..+ .....
T Consensus 15 ~~n~~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~-----~l~~L~~L~~L~L~~N~I~~i~~-~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQITKLE-----GLPGLPRLKTLDLSNNRISSISE-GLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-----T----TT--EEE--SS---S-CH-HHHHH
T ss_pred cccccccccccccccccc--cccchhhhhcCCCEEECCCCCCcccc-----CccChhhhhhcccCCCCCCcccc-chHHh
Confidence 334456677777777776 34444335677788888888877664 24567788888888888887643 11235
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEEccCC
Q 016362 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~--~~l~~l~~L~~L~l~~n 358 (390)
+|+|++|.+++|+|.++..-.. ...+++|++|+|.+|.++..+.- -.+..+|+|+.||- .
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~----------------L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~--~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEP----------------LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG--Q 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGG----------------GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT--E
T ss_pred CCcCCEEECcCCcCCChHHhHH----------------HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC--E
Confidence 7888888888888877632111 45678888888888888753321 34567888888863 4
Q ss_pred CCCC
Q 016362 359 PVSD 362 (390)
Q Consensus 359 ~l~~ 362 (390)
+++.
T Consensus 149 ~V~~ 152 (175)
T PF14580_consen 149 DVTE 152 (175)
T ss_dssp ETTS
T ss_pred EccH
Confidence 4443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.5e-12 Score=117.67 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=43.1
Q ss_pred CCCCCCCCEEeCCCCCCCCchhhhh-----ccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEec
Q 016362 319 YLPFQNLCCLLLGNNMIEDLASIDS-----LDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 384 (390)
Q Consensus 319 ~~~l~~L~~L~Ls~N~i~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln 384 (390)
...++.|+.|+++.|.|.++..++. ...+|+|++|+++.|+|.+ .+..--+..+++|+.|+
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-----w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-----WRSLNHLRTLENLKHLR 332 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-----ccccchhhccchhhhhh
Confidence 3468999999999999987655533 3568999999999999975 33321244456666655
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=6.8e-12 Score=120.44 Aligned_cols=174 Identities=33% Similarity=0.455 Sum_probs=84.0
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCC-CCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLP-ALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
+.++.|++.+|.++. ++.....+. +|+.|++++|.+......+..++.|+.|++++|+++ .++......+.|+.
T Consensus 116 ~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCccccc---CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhh
Confidence 445555555555553 223333332 555555555555443334445555555555555554 23333234455555
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccc
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~ 314 (390)
|++++|.++.++.. ......|+.|.+++|.+.... ..+.++.++..|.+.+|++... +..
T Consensus 191 L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~~~~--~~~------------ 250 (394)
T COG4886 191 LDLSGNKISDLPPE----IELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKLEDL--PES------------ 250 (394)
T ss_pred eeccCCccccCchh----hhhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCceeeec--cch------------
Confidence 55555555554331 122233555555555322221 2244455555555555555443 111
Q ss_pred cccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 315 HEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 315 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
...++.|+.|++++|.++.++. +..+.+|+.|++++|.+.
T Consensus 251 ----~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 ----IGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----hccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 3344556666666666655532 555556666666665554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.8e-11 Score=116.24 Aligned_cols=183 Identities=29% Similarity=0.331 Sum_probs=146.8
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcC-cccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVT-NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 203 (390)
...+..++.++.+.+.++.+..+++.... .. +|+.|++++|.+. .+|..+..+++|+.|+++.|++....+....
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~-~~~nL~~L~l~~N~i~---~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSDNKIE---SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred chhhhcccceeEEecCCcccccCcccccc-chhhcccccccccchh---hhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 34556668899999999999998875544 24 8999999999998 4556788999999999999999877665558
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
.+.|+.|++++|+++ .++........|+++.+++|.+..... .+..+..+..+.+.+|++...+ ..++.+++
T Consensus 185 ~~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~ 256 (394)
T COG4886 185 LSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDLP--ESIGNLSN 256 (394)
T ss_pred hhhhhheeccCCccc--cCchhhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeecc--chhccccc
Confidence 899999999999998 455544455669999999996444332 4677888899999999887754 35678889
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016362 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 338 (390)
++.|++++|.++++. . +..+.+|+.|++++|.+...
T Consensus 257 l~~L~~s~n~i~~i~--~-----------------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQISSIS--S-----------------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceeccccccccccc--c-----------------ccccCccCEEeccCcccccc
Confidence 999999999999984 2 35678999999999988754
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=7.5e-13 Score=124.69 Aligned_cols=164 Identities=22% Similarity=0.235 Sum_probs=130.1
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
.+..+|..+..|..|..+.+..|.+..++..+..+ ..|++|||+.|.++ .+|..+..|+ |+.|-+++|+++..++
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L-~~lt~l~ls~NqlS---~lp~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNL-EALTFLDLSSNQLS---HLPDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhh-hHHHHhhhccchhh---cCChhhhcCc-ceeEEEecCccccCCc
Confidence 35667888888888888888888888888777775 88888999998887 4566665555 7888888888887777
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
+++....|..|+.+.|.+. .++.-++.+.+|+.|.+..|.+...+.. +..+ .|..||+++|++..++ ..+.
T Consensus 161 ~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~E----l~~L-pLi~lDfScNkis~iP--v~fr 231 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEE----LCSL-PLIRLDFSCNKISYLP--VDFR 231 (722)
T ss_pred ccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHH----HhCC-ceeeeecccCceeecc--hhhh
Confidence 7888888888888888876 4555557888888888888888877654 4433 4888999999988877 4678
Q ss_pred CCCCcCeEecCCCccccc
Q 016362 280 QIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~ 297 (390)
+++.|++|-|.+|.++.-
T Consensus 232 ~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhheeeeeccCCCCCC
Confidence 888999999999988774
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.12 E-value=6.7e-11 Score=97.94 Aligned_cols=110 Identities=32% Similarity=0.467 Sum_probs=96.4
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016362 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 336 (390)
.+...+||++|.+...+ .|..++.|.+|.|++|+|+.+. |.. ...+++|+.|.|.+|.|.
T Consensus 42 d~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt~I~-p~L----------------~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRITRID-PDL----------------DTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhhcc---cCCCccccceEEecCCcceeec-cch----------------hhhccccceEEecCcchh
Confidence 56789999999987754 4778999999999999999996 554 345689999999999999
Q ss_pred CchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016362 337 DLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 337 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
.+..++-+..||+|++|.+-+||+.. .+-.+++++-++|+|++||...|+
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhc---ccCceeEEEEecCcceEeehhhhh
Confidence 98888889999999999999999987 457899999999999999998875
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.10 E-value=3.3e-12 Score=123.44 Aligned_cols=180 Identities=22% Similarity=0.317 Sum_probs=132.1
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC----------ccCCCCCCCCccEEEeecccCCH
Q 016362 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK----------EVTGLPQLKSIRILVLNCTGVNW 219 (390)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~----------~~~~~~~l~~L~~L~L~~n~l~~ 219 (390)
.++.+ ..|+.|.|.++.+.....+-..- ..|++|..+ |.+.. .+..-.....|.+.+.+.|.+.
T Consensus 104 ~ifpF-~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPF-RSLRVLELRGCDLSTAKGLQELR---HQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccc-cceeeEEecCcchhhhhhhHHHH---Hhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 67765 89999999999887533222221 234444332 22221 1111113346777788888876
Q ss_pred HHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccC
Q 016362 220 MQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYY 299 (390)
Q Consensus 220 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 299 (390)
.+...+.-++.|+.|+|++|+++... .+..++.|++|||+.|.++..+.+.. ..+ +|..|++++|.++.+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc-~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCLRHVPQLSM-VGC-KLQLLNLRNNALTTLR- 248 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchhccccccch-hhh-hheeeeecccHHHhhh-
Confidence 45566677899999999999999875 47889999999999999998776322 233 4999999999999873
Q ss_pred CCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 300 PNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
. +.++++|+.||+++|-|.+...++-+..+..|+.|+|.|||+--
T Consensus 249 -g-----------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 249 -G-----------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -h-----------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 2 56789999999999999987766677788899999999999963
No 42
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=99.05 E-value=9e-11 Score=115.63 Aligned_cols=72 Identities=36% Similarity=0.627 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeec
Q 016362 2 NDCNPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (390)
Q Consensus 2 ~~~~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~ 76 (390)
-+|.+.++.||++|.+.+.. +|.|+|+|++.+..|.|.||+-|++.|||||++.|++||.|... .|.|++..
T Consensus 11 q~~~~~~~~ig~~v~v~~~~--~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~-kgif~~~~ 82 (664)
T KOG4568|consen 11 QLDDLGQFIIGRRVWVNNVE--LGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEPK-KGIFFRQG 82 (664)
T ss_pred hhhhhhhhhhcceEEecCCc--ceeeeeccCcccccceeeceeeccccCCCCcccchhhhhccccc-cceeeccc
Confidence 35778999999999998874 49999999999999999999999999999999999999999974 44466544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.8e-11 Score=105.84 Aligned_cols=183 Identities=19% Similarity=0.176 Sum_probs=137.4
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecc-cCCHHHHHHHHhcCCccc
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCT-GVNWMQVEILKHSLPALE 233 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~ 233 (390)
..|++|||+...++. ..+-..+++|.+|+.|.+.++++...+. .+++-..|+.|+++.+ +++...+..++.+|..|.
T Consensus 185 sRlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 569999999988875 4667788999999999999999987665 6888899999999985 688777888889999999
Q ss_pred EEeccCCCccccCCCCCCccCC-CCCccEEEcCCCC--CCCchhhhh-cCCCCCcCeEecCCCc-cccccCCCCCchhhh
Q 016362 234 ELHLMGNSISEITPVSSPIVQG-FDNLQLLNLEDNC--IAEWSEILK-LCQIRSLEQLYLNKNN-LNRIYYPNNDTIHEL 308 (390)
Q Consensus 234 ~L~l~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~--l~~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~ 308 (390)
+|++++|.+....-. ..+.. -.+|+.|+|+++. +..- .+.. ...+|+|.+|+|+.|. ++.-. -..
T Consensus 264 ~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~s-h~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~------ 333 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKS-HLSTLVRRCPNLVHLDLSDSVMLKNDC-FQE------ 333 (419)
T ss_pred hcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhh-HHHHHHHhCCceeeeccccccccCchH-HHH------
Confidence 999999987654311 12222 2678999999874 2211 2233 3579999999999875 44321 111
Q ss_pred hhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCC
Q 016362 309 VSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENP 359 (390)
Q Consensus 309 ~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~ 359 (390)
+..|+.|++|.++.|..-....+-.+...|.|.+|++-++-
T Consensus 334 ----------~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ----------FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----------HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 56789999999999954443344567889999999998873
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=9.8e-11 Score=112.89 Aligned_cols=156 Identities=33% Similarity=0.411 Sum_probs=94.2
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..++.|..+++.+|.|..+...+. .+++|++|++++|.|..+.. +..++.|+.|++++|.+.. +..+..+..
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~-~~~~~~l~~ 163 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISD-ISGLESLKS 163 (414)
T ss_pred ccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc----hhhccchhhheeccCcchh-ccCCccchh
Confidence 35666777777777777766543233 24777777777777775432 3455667777777777753 344555677
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC--c
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS--L 284 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~--L 284 (390)
|+.+++++|.+....... ...+.+++.+.+..|.+..+. .+..+..+..+++..|.++.... +..+.. |
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-----~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L 234 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-----GLDLLKKLVLLSLLDNKISKLEG---LNELVMLHL 234 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-----chHHHHHHHHhhcccccceeccC---cccchhHHH
Confidence 777777777765322201 356677777777777766543 23334455555677776665443 222333 7
Q ss_pred CeEecCCCccccc
Q 016362 285 EQLYLNKNNLNRI 297 (390)
Q Consensus 285 ~~L~L~~n~l~~~ 297 (390)
+.+.+++|.+...
T Consensus 235 ~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 235 RELYLSGNRISRS 247 (414)
T ss_pred HHHhcccCccccc
Confidence 7778888877765
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.9e-10 Score=110.97 Aligned_cols=216 Identities=25% Similarity=0.282 Sum_probs=154.5
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016362 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
..+..++.+++..|.+......+.. +.+|+.|++.+|.+..+ ...+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~-~~~l~~l~l~~n~i~~i---~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSK-LKSLEALDLYDNKIEKI---ENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhhccccc-ccceeeeeccccchhhc---ccchhhhhcchheeccccccccc-cchhhccchh
Confidence 4566667777888888773333444 48999999999999853 33367899999999999999744 4566777799
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
.|++++|.++ .+..+ ..++.|+.+++++|.+..+... . ...+..++.+.+.+|.+..+..+ ..+..+..++
T Consensus 144 ~L~l~~N~i~--~~~~~-~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~~---~~~~~l~~~~ 214 (414)
T KOG0531|consen 144 ELNLSGNLIS--DISGL-ESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEGL---DLLKKLVLLS 214 (414)
T ss_pred hheeccCcch--hccCC-ccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccch---HHHHHHHHhh
Confidence 9999999987 34433 4588999999999999877541 0 35678899999999998876543 3344555668
Q ss_pred cCCCccccccCCCCCch--hhhhhccccccc----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 289 LNKNNLNRIYYPNNDTI--HELVSAHESHEE----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~--l~~~~~~~~~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+..|.++.+........ ++.+.+++|... ++..+..+..|++.+|++.... .+...+.+..+....|++.
T Consensus 215 l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 215 LLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc---cccccchHHHhccCcchhc
Confidence 89999888754333333 455666666543 4456777777777777777653 4556667777777777765
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.88 E-value=3e-09 Score=92.10 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=153.3
Q ss_pred eecCCcceEEEEeCh-hHHHHHHhccccccEeecCCcccCCCCc-chhhh---cCcccEEECCCCcCCC-hHHH------
Q 016362 107 LSASNKHVSIELVGK-DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTI---VTNLKELDLTGNLLSD-WKDI------ 174 (390)
Q Consensus 107 ~~~~~~~~~i~~~g~-~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~---~~~L~~L~L~~n~l~~-~~~~------ 174 (390)
++++++.+.++...- +..-..+..++.++.++|++|.|+.... .++.. -.+|+..++++-.... .+.+
T Consensus 4 fSI~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 4 FSIGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred eccCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH
Confidence 455666655554322 4444566779999999999999987543 22221 2667777776643321 1233
Q ss_pred -HHHHhcCCCCCEEEccCCCCCCccCC-----CCCCCCccEEEeecccCC---HHHHHHH---------HhcCCcccEEe
Q 016362 175 -GAFGEQLPALAVLNLSNNLMSKEVTG-----LPQLKSIRILVLNCTGVN---WMQVEIL---------KHSLPALEELH 236 (390)
Q Consensus 175 -~~~l~~l~~L~~L~ls~n~l~~~~~~-----~~~l~~L~~L~L~~n~l~---~~~~~~~---------~~~l~~L~~L~ 236 (390)
.+.+-.||+|+..++|+|.+....+. +++-..|++|.|++|.+. +..+... +..-|.|+...
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 35566899999999999998765442 567889999999999864 2222211 23446788888
Q ss_pred ccCCCccccCCC-CCCccCCCCCccEEEcCCCCCCCc--hhh--hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhc
Q 016362 237 LMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEW--SEI--LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (390)
Q Consensus 237 l~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~ 311 (390)
...|.+..-+.. +...+..-..|+.+.+..|.|..- ..+ ..+..+.+|+.|+|..|.++-.+-...+..
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a------ 237 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA------ 237 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH------
Confidence 888887643321 111223335788888888887643 222 334567889999999888875431110000
Q ss_pred ccccccCCCCCCCCCEEeCCCCCCCCchhh---hhcc--CCCCCcEEEccCCCCCC
Q 016362 312 HESHEESYLPFQNLCCLLLGNNMIEDLASI---DSLD--SFPKLMDIRLSENPVSD 362 (390)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~---~~l~--~l~~L~~L~l~~n~l~~ 362 (390)
....+.|++|.+.+|-++.-..- ..+. ..|+|..|.+.+|.+..
T Consensus 238 -------l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 238 -------LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred -------hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 23346688888888877753322 2222 46888888888887764
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=4.2e-09 Score=72.31 Aligned_cols=61 Identities=33% Similarity=0.498 Sum_probs=53.2
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
|+|++|++++|+|+.+. +.. +..+++|++|++++|+|+.++ .+.|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~-~~~----------------f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP-PDS----------------FSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC-TTT----------------TTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC-HHH----------------HcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 57999999999999983 233 778999999999999999874 47899999999999999985
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.3e-08 Score=89.39 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=145.8
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcch-hhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANI-GTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV 198 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 198 (390)
.+..|...+.+++.|+.|+++.|.+....... .. ..+|+.|-|.+..+. |..+-..+..+|.++.|.+|.|.+....
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 46778888899999999999999887765544 33 378999999887765 4455667788999999999998554321
Q ss_pred ---CCCC-CCCCccEEEeecccCC-HHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCch
Q 016362 199 ---TGLP-QLKSIRILVLNCTGVN-WMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWS 273 (390)
Q Consensus 199 ---~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 273 (390)
.... .-+.+++|.+..|... |.....+...+|++..+-+..|.+.+.... .....++.+.-|+|+.|+|.+|.
T Consensus 163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswa 240 (418)
T KOG2982|consen 163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWA 240 (418)
T ss_pred cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHH
Confidence 1122 2346777777777543 556666777889999999999988766432 23455678889999999999999
Q ss_pred hhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016362 274 EILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 274 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 336 (390)
.+..+..++.|..|.++++.+.+.- ...... .--+..+++++.|+=+ +|+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l--~~~err---------~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPL--RGGERR---------FLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccc--cCCcce---------EEEEeeccceEEecCc--ccc
Confidence 9999999999999999999987641 111110 1115667888888755 565
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.2e-09 Score=94.12 Aligned_cols=168 Identities=20% Similarity=0.118 Sum_probs=119.9
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016362 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
..+...++.|.+|+.|++.++.+.+... .++.. .+|+.|+|+.+.--.-..+...+..|..|..|+++++.+......
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 4455667888888888898888876544 66666 889999998876444345556778888999999999876544321
Q ss_pred --CC-CCCCccEEEeeccc--CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh
Q 016362 201 --LP-QLKSIRILVLNCTG--VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI 275 (390)
Q Consensus 201 --~~-~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 275 (390)
+. --++|+.|+++++. +....+..+...+|+|.+|||++|..-.. .+...+..++.|++|.++.|..-....+
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHe
Confidence 22 23678888888863 44446777888999999999988754332 1223566778899999999976554444
Q ss_pred hhcCCCCCcCeEecCCC
Q 016362 276 LKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 276 ~~l~~l~~L~~L~L~~n 292 (390)
-.+...|.|.+|+..++
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 55677889999988774
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.4e-08 Score=69.71 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=54.0
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcc
Q 016362 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 294 (390)
|+|++|++++|.++.++.. .+..+++|++|++++|.++..++ ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~---~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD---SFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT---TTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH---HHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988765 78889999999999999998876 6788999999999999975
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.70 E-value=1.7e-10 Score=111.88 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=43.4
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
+.|+.|+|++|++++. +.+..|++|++|||+.|.+...+. ....| +|+.|++.+|-++ .+..+ .++.+|+.
T Consensus 187 ~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~--tL~gi-e~LksL~~ 258 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT--TLRGI-ENLKSLYG 258 (1096)
T ss_pred HHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH--hhhhH-Hhhhhhhc
Confidence 4455555555554432 234444555555555554442221 11122 2455555544443 12222 34444555
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 270 (390)
||+++|-+.+...- ..+..+..|+.|.|.+|++.
T Consensus 259 LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhHhhhhcchhh--hHHHHHHHHHHHhhcCCccc
Confidence 55555544433211 01233344445555555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=2e-08 Score=87.17 Aligned_cols=250 Identities=17% Similarity=0.132 Sum_probs=164.6
Q ss_pred cceEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCCc----------chhhhcCcccEEECCCCcCCC-
Q 016362 102 DEMYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA----------NIGTIVTNLKELDLTGNLLSD- 170 (390)
Q Consensus 102 ~~~~~~~~~~~~~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~----------~~~~~~~~L~~L~L~~n~l~~- 170 (390)
+.+..+..+++. |..--++.+...+.+-++|+..+++.-..+-.-. ...-.||+|+..+||+|.+..
T Consensus 30 d~~~evdLSGNt--igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNT--IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCc--ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 344444445554 2222246677788888889998888755443222 112237999999999998865
Q ss_pred -hHHHHHHHhcCCCCCEEEccCCCCCCccC--------------CCCCCCCccEEEeecccCCHH---HHHHHHhcCCcc
Q 016362 171 -WKDIGAFGEQLPALAVLNLSNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNWM---QVEILKHSLPAL 232 (390)
Q Consensus 171 -~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--------------~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L 232 (390)
...+-+.+++-..|.+|.+++|.+..... ....-+.|++.....|++... .....+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 33455677788899999999998754321 123558899999999987522 223333444689
Q ss_pred cEEeccCCCccccCCC--CCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhh
Q 016362 233 EELHLMGNSISEITPV--SSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 233 ~~L~l~~n~l~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 307 (390)
+++.+..|.|....-. ....+..+.+|+.|||.+|.++..... ..+..++.|++|+++.|-++..+.........
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 9999999988744211 001234568999999999998865442 34567888999999999988764322211110
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCCCCCchhh----hhc--cCCCCCcEEEccCCCCCCCC
Q 016362 308 LVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI----DSL--DSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 308 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~l--~~l~~L~~L~l~~n~l~~~~ 364 (390)
-...++|+.|-..+|.+..-... ..+ .++|-|..|.+.+|.|.+..
T Consensus 268 -----------e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 268 -----------EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred -----------hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 12468999999999977642221 122 36888999999999998643
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=6.8e-08 Score=97.64 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=40.4
Q ss_pred CCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEE
Q 016362 184 LAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262 (390)
Q Consensus 184 L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 262 (390)
++.|+|++|.+.+..+ .+..+++|+.|+|++|.+.+ .++..+..+++|+.|++++|.+++..+. .+..+++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~---~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPE---SLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCch---HHhcCCCCCEE
Confidence 4445555555544433 34445555555555555443 2333334555555555555555544332 34455555555
Q ss_pred EcCCCCCCC
Q 016362 263 NLEDNCIAE 271 (390)
Q Consensus 263 ~L~~n~l~~ 271 (390)
+|++|.+++
T Consensus 496 ~Ls~N~l~g 504 (623)
T PLN03150 496 NLNGNSLSG 504 (623)
T ss_pred ECcCCcccc
Confidence 555555543
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=8.7e-09 Score=94.34 Aligned_cols=259 Identities=17% Similarity=0.103 Sum_probs=132.0
Q ss_pred eChhHHHHHHhccccccEeecCCcccCCCCc--chhhhcCcccEEECCCC-cCCChHHHHHHHhcCCCCCEEEccCCC-C
Q 016362 119 VGKDKIQDKFSKFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGN-LLSDWKDIGAFGEQLPALAVLNLSNNL-M 194 (390)
Q Consensus 119 ~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~l~~L~~L~ls~n~-l 194 (390)
++...+......+++++.|.+.++....... .+...|++|+.|++..| .+++. .+-.....+++|++|+++++. +
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchh
Confidence 3445666677889999999888876333222 77888999999999885 34442 233356689999999999873 4
Q ss_pred CCccC--CCCCCCCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016362 195 SKEVT--GLPQLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 195 ~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 270 (390)
++... -..++..++.+.+.+| .+..+.+......++.+..+++..|. +++.... ..-..+..|+.|+.+++...
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCC
Confidence 44211 1234444555544443 22233333333444445555544432 2222100 01122334444444444322
Q ss_pred CchhhhhcC-CCCCcCeEecCCCc-cccccCCCCCch---hhhhhcccc-------cccCCCCCCCCCEEeCCCC-CCCC
Q 016362 271 EWSEILKLC-QIRSLEQLYLNKNN-LNRIYYPNNDTI---HELVSAHES-------HEESYLPFQNLCCLLLGNN-MIED 337 (390)
Q Consensus 271 ~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~---l~~~~~~~~-------~~~~~~~l~~L~~L~Ls~N-~i~~ 337 (390)
+...+..++ ++.+|+.|-+.+|+ +++.++...... ++.++..+- ...-..+++.|+.|.|++| .|++
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 222222222 34444444444443 222221111000 000000000 0011456788888888888 5555
Q ss_pred chhhhhc----cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 338 LASIDSL----DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 338 ~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
. .+..+ .....|..+.|+++|...+ ..-.. +..+++|+.+++-
T Consensus 388 ~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~--l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 388 E-GIRHLSSSSCSLEGLEVLELDNCPLITD---ATLEH--LSICRNLERIELI 434 (483)
T ss_pred h-hhhhhhhccccccccceeeecCCCCchH---HHHHH--HhhCcccceeeee
Confidence 3 22222 2466788888888887652 23333 6677788776653
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=9.8e-08 Score=96.52 Aligned_cols=108 Identities=26% Similarity=0.271 Sum_probs=91.7
Q ss_pred cccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016362 157 NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 157 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (390)
.++.|+|++|.+.+ .+|..+..+++|+.|++++|.+.+.+| .+..+++|+.|+|++|.+++ .++..+..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEE
Confidence 48899999999987 788899999999999999999998777 68999999999999999987 456666899999999
Q ss_pred eccCCCccccCCCCCCccCC-CCCccEEEcCCCCCC
Q 016362 236 HLMGNSISEITPVSSPIVQG-FDNLQLLNLEDNCIA 270 (390)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~l~ 270 (390)
++++|.+++..+. .+.. ..++..+++.+|...
T Consensus 496 ~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 496 NLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ECcCCcccccCCh---HHhhccccCceEEecCCccc
Confidence 9999999877654 4443 246778999988643
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=6.1e-08 Score=98.00 Aligned_cols=162 Identities=21% Similarity=0.282 Sum_probs=119.0
Q ss_pred CCCCCEEEccCCCCC-CccC-CCC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC
Q 016362 181 LPALAVLNLSNNLMS-KEVT-GLP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD 257 (390)
Q Consensus 181 l~~L~~L~ls~n~l~-~~~~-~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 257 (390)
-.+|++|++++...- ...+ .++ .+|+|++|.+.+-.+....+..+..++|+|..||+++++++... .++.++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-----GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-----GISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-----HHhccc
Confidence 357999999886432 2222 233 67999999999988776678888899999999999999998773 478899
Q ss_pred CccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016362 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 258 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~ 337 (390)
+|+.|.+.+=.+.....+..+.++++|+.||+|....... +.. ...| .+....+|+|+.||.|+..+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~--~~i--i~qY-------lec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD--TKI--IEQY-------LECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc--hHH--HHHH-------HHhcccCccccEEecCCcchhH
Confidence 9999999999999877777888999999999998765543 111 0011 1224568999999999988886
Q ss_pred chhhhhccCCCCCcEEEccCC
Q 016362 338 LASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 338 ~~~~~~l~~l~~L~~L~l~~n 358 (390)
...-..+..-|+|+.+..-++
T Consensus 265 ~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 265 EILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHHHHHHhCccHhhhhhhhh
Confidence 422233345677777665543
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.46 E-value=5.6e-08 Score=100.77 Aligned_cols=106 Identities=25% Similarity=0.207 Sum_probs=57.6
Q ss_pred ccccEeecCCcc--cCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016362 132 EELTSAALPYLG--VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 132 ~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
++|++|-+..+. +...+..++..++.|+.|||++|.=-. .+|..++.|-+|++|+++++.+...+..+..+..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 345566555554 444444445555666666666543222 5566666666666666666666655555666666666
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCC
Q 016362 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGN 240 (390)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 240 (390)
|++..+.-.. .++.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLE-SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccc-cccchhhhcccccEEEeecc
Confidence 6666543221 22334344566666665443
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.2e-08 Score=88.76 Aligned_cols=111 Identities=25% Similarity=0.307 Sum_probs=91.4
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCC
Q 016362 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i 335 (390)
+.+.+.|++.+|.+.++ ..+.+++.|+.|.|+-|+|+.+.. +..|.+|++|+|..|.|
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p-------------------l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP-------------------LQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh-------------------HHHHHHHHHHHHHhccc
Confidence 34567778888877764 346678889999999999988741 56789999999999999
Q ss_pred CCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016362 336 EDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 336 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
.++..+..|.++|+|+.|+|..||=.... |.-.+..++.-||+||.||--.||
T Consensus 76 ~sldEL~YLknlpsLr~LWL~ENPCc~~a-g~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 76 ESLDELEYLKNLPSLRTLWLDENPCCGEA-GQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred ccHHHHHHHhcCchhhhHhhccCCccccc-chhHHHHHHHHcccchhccCcccc
Confidence 99888888999999999999999977654 556777889999999999977765
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=1.7e-07 Score=86.07 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=113.0
Q ss_pred CCCCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCCCc-cccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC-
Q 016362 203 QLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSI-SEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC- 279 (390)
Q Consensus 203 ~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~- 279 (390)
.+..|+.|..+++ .+++..+..+..++++|+.|-++.++. ++.... ..-++++.|+.+++..+.......+..+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--MLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--hhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 4677888888774 566667777778889999999988863 333221 12356788999999998765444344443
Q ss_pred CCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 280 QIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 280 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+++.|+.|.|++|. +++.+.... .++......|+.|.|+++....-..++.+..+++|+.+++-+|
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l-------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHL-------------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhh-------------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 68999999999886 455421111 0113457899999999996665556788899999999999999
Q ss_pred CCCCCCCcchhhhhhhhhcCCceEe
Q 016362 359 PVSDPGRGGISRFAIIARLGKIKIL 383 (390)
Q Consensus 359 ~l~~~~~~~~~~~~~i~~l~~L~~L 383 (390)
.-... ..+.+. ..++|++++.
T Consensus 437 q~vtk--~~i~~~--~~~lp~i~v~ 457 (483)
T KOG4341|consen 437 QDVTK--EAISRF--ATHLPNIKVH 457 (483)
T ss_pred hhhhh--hhhHHH--HhhCccceeh
Confidence 75432 234444 6788888765
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.37 E-value=2.5e-07 Score=80.21 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=84.2
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcccccc-CCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCC
Q 016362 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIY-YPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNM 334 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 334 (390)
+..|+.|++.+..+++.. .+..+++|+.|.++.|...... .+.. ...+++|++|++++|+
T Consensus 42 ~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl----------------~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVL----------------AEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceeh----------------hhhCCceeEEeecCCc
Confidence 456677777777766643 3567889999999999433221 1221 4456999999999999
Q ss_pred CCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016362 335 IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 335 i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
|..+..+..+..+++|..|++.+|+.+. -.-++..++..+++|+.||+..+.
T Consensus 103 i~~lstl~pl~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 103 IKDLSTLRPLKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccccccchhhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhccccccccC
Confidence 9987777778889999999999998876 346777788889999999987763
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.36 E-value=4.9e-07 Score=75.35 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=54.2
Q ss_pred CCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEE
Q 016362 183 ALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262 (390)
Q Consensus 183 ~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 262 (390)
+...+|+++|.+. ..+.|..++.|.+|.+++|+|+. .-+.+...+++|..|.+.+|.+..+..- ..+..++.|+.|
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDL--DPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhc--chhccCCcccee
Confidence 3444455555443 22344455555555555555542 1222234445566666666655544321 124555666666
Q ss_pred EcCCCCCCCchhh--hhcCCCCCcCeEecCCC
Q 016362 263 NLEDNCIAEWSEI--LKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 263 ~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~n 292 (390)
.+-+|+++....- ..+..+|+|+.|+.++-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666543321 44566777777776653
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=7.2e-07 Score=92.68 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=104.4
Q ss_pred HHHhccccccEeecCCcc-cCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCC-C
Q 016362 126 DKFSKFEELTSAALPYLG-VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLP-Q 203 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~ 203 (390)
..|..++.|+.|+|++|. +...|..+..+ -+|++|++++..+. .+|..+.++..|.+|++..+.....++.+. .
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L-i~LryL~L~~t~I~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGEL-VHLRYLDLSDTGIS---HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhh-hhhhcccccCCCcc---ccchHHHHHHhhheeccccccccccccchhhh
Confidence 458889999999999774 45555577775 99999999999988 789999999999999999876554555444 5
Q ss_pred CCCccEEEeecccCC--HHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCc----cEEEcCCCCCCCchhhhh
Q 016362 204 LKSIRILVLNCTGVN--WMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL----QLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 204 l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~ 277 (390)
+.+|++|.+...... ...+.. +..+.+|+.+....... .+.. .+..+..| +.+.+.++...... ..
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~-~~~e----~l~~~~~L~~~~~~l~~~~~~~~~~~--~~ 712 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSV-LLLE----DLLGMTRLRSLLQSLSIEGCSKRTLI--SS 712 (889)
T ss_pred cccccEEEeeccccccchhhHHh-hhcccchhhheeecchh-HhHh----hhhhhHHHHHHhHhhhhcccccceee--cc
Confidence 999999999776422 212222 24555555555533322 0000 11222222 23333333332222 35
Q ss_pred cCCCCCcCeEecCCCccccc
Q 016362 278 LCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~ 297 (390)
+..+.+|+.|.+.++.+.+.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEI 732 (889)
T ss_pred cccccCcceEEEEcCCCchh
Confidence 66788888888888887654
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=8.4e-08 Score=74.91 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=78.8
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
.+..++|++|.+-.+... ...+.....|+..+|++|.+.++++ ..-.+.+.++.|+|++|.|+++ |..
T Consensus 28 E~h~ldLssc~lm~i~da-vy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisdv--PeE-------- 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADA-VYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISDV--PEE-------- 95 (177)
T ss_pred HhhhcccccchhhHHHHH-HHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhhc--hHH--------
Confidence 466778888876644321 1123344667888889998888876 3334567888888888888888 665
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..++.|+.|++++|.+...+ ..+..+.+|..|+..+|.+..
T Consensus 96 --------~Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 96 --------LAAMPALRSLNLRFNPLNAEP--RVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred --------HhhhHHhhhcccccCccccch--HHHHHHHhHHHhcCCCCcccc
Confidence 556788888888888888765 456568888888888887764
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=1.2e-07 Score=74.06 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=92.9
Q ss_pred ccEEEeecccCC-HHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016362 207 IRILVLNCTGVN-WMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 207 L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
+..++|+.|.+- .......+.....|...++++|.+...+.. .....+.+++|+|++|.|++.+. .+..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k---ft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK---FTIKFPTATTLNLANNEISDVPE--ELAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH---HhhccchhhhhhcchhhhhhchH--HHhhhHHhh
Confidence 445566666654 112333345556778889999998877665 23345688999999999999885 488899999
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc-cCCCCCcEEEccCCCCCCCC
Q 016362 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL-DSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~ 364 (390)
.|+++.|.+... |.- +.++.+|-.|+.-+|.+..++. +.+ ..++.|..| .++|+.+.+
T Consensus 104 ~lNl~~N~l~~~--p~v----------------i~~L~~l~~Lds~~na~~eid~-dl~~s~~~al~~l--gnepl~~~~ 162 (177)
T KOG4579|consen 104 SLNLRFNPLNAE--PRV----------------IAPLIKLDMLDSPENARAEIDV-DLFYSSLPALIKL--GNEPLGDET 162 (177)
T ss_pred hcccccCccccc--hHH----------------HHHHHhHHHhcCCCCccccCcH-HHhccccHHHHHh--cCCcccccC
Confidence 999999998876 443 4457888899999998887753 333 345555544 778888644
No 65
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=98.22 E-value=2.7e-06 Score=79.53 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=61.8
Q ss_pred CCCCCEEEeCCCc----eeeEEEEEeeecCCCCCeEEEEEecCCC-----CCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 9 YKLGQRVHSANDA----RRIGTVKYVGEVQGYSGTWLGVDWDYGN-----GKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 9 ~~~g~~v~~~~~~----~~~~tv~~~g~~~~~~~~w~Gv~~d~~~-----gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
++||+-|.+. +. +-+|.|||||.=|+..+.|+|||++|.+ +-.||+..|.|||.|-. +..-|+....-.
T Consensus 236 L~IGslveV~-np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d-~~a~Fv~~~scs 313 (724)
T KOG3556|consen 236 LKIGSLVEVE-NPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFD-TNANFVMSGSCS 313 (724)
T ss_pred ceecceEEec-CCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeecc-ccceeeEcCCCC
Confidence 7899999996 44 5679999999999999999999999876 45589999999999986 677888776655
Q ss_pred CCCCch
Q 016362 80 PGISLP 85 (390)
Q Consensus 80 ~~~s~~ 85 (390)
...+|.
T Consensus 314 ~d~rfa 319 (724)
T KOG3556|consen 314 VDPRFA 319 (724)
T ss_pred cCcccc
Confidence 554444
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=2e-06 Score=54.30 Aligned_cols=38 Identities=47% Similarity=0.668 Sum_probs=32.5
Q ss_pred CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 323 QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++|++|++++|+|++++ ..+..+++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 47999999999999986 358999999999999999985
No 67
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=98.13 E-value=6.3e-07 Score=88.86 Aligned_cols=72 Identities=40% Similarity=0.701 Sum_probs=64.6
Q ss_pred CCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
++..+.||+||.+.+. ..|++||.|...+..|.|.|+|.|++.|+++|.+.+++||+|.. .+|.|....++.
T Consensus 151 ~~~~l~v~dr~l~~gq--~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~-ky~~f~~v~kv~ 222 (664)
T KOG4568|consen 151 SMLGLRVGDRVLVGGQ--KSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKP-KYGKFAPVQKVF 222 (664)
T ss_pred CccccccccceeecCc--ccchhhhhccccccCCcccchhcccccccccccccccccccCcc-hhcchhHHHHHh
Confidence 4688999999999654 66999999999999999999999999999999999999999986 788888776654
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.1e-06 Score=53.43 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=33.3
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchh
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLAS 340 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 340 (390)
++|++|++++|+|+++ |.. +..+++|++|++++|+|++++.
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~----------------l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPE----------------LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGH----------------GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCccc--Cch----------------HhCCCCCCEEEecCCCCCCCcC
Confidence 5799999999999998 332 5789999999999999998764
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=2.8e-06 Score=86.16 Aligned_cols=138 Identities=15% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCccEEEeecccC-CHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016362 204 LKSIRILVLNCTGV-NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 204 l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
-.+|++|++++... ...-+......+|+|+.|.+++-.+.... +.....++++|..||++++.++.. ..+++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 35788888887543 22224455567899999998876654332 223456788999999999988875 4577888
Q ss_pred CcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch-hh----hhccCCCCCcEEEccC
Q 016362 283 SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA-SI----DSLDSFPKLMDIRLSE 357 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-~~----~~l~~l~~L~~L~l~~ 357 (390)
+|+.|.+.+=.+..- ... ...-.+++|+.||+|..+....+ .+ +.-..+|.|+.||.|+
T Consensus 196 nLq~L~mrnLe~e~~--~~l--------------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESY--QDL--------------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCch--hhH--------------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888888887555431 110 00346899999999988665533 11 2234689999999998
Q ss_pred CCCCC
Q 016362 358 NPVSD 362 (390)
Q Consensus 358 n~l~~ 362 (390)
..+.+
T Consensus 260 Tdi~~ 264 (699)
T KOG3665|consen 260 TDINE 264 (699)
T ss_pred cchhH
Confidence 88774
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=5.5e-07 Score=78.58 Aligned_cols=88 Identities=30% Similarity=0.407 Sum_probs=74.4
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
.+.+.+.|++.+|++++ +. +...++.|+.|.|+-|+|+...+ +..|++|+.|.|..|.|.++.++.-+.++|
T Consensus 17 dl~~vkKLNcwg~~L~D--Is-ic~kMp~lEVLsLSvNkIssL~p-----l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--IS-ICEKMPLLEVLSLSVNKISSLAP-----LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccH--HH-HHHhcccceeEEeeccccccchh-----HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 34567788899999884 33 33788999999999999998754 678899999999999999999888899999
Q ss_pred CcCeEecCCCcccccc
Q 016362 283 SLEQLYLNKNNLNRIY 298 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~~ 298 (390)
+|+.|.|..|...+..
T Consensus 89 sLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEA 104 (388)
T ss_pred hhhhHhhccCCccccc
Confidence 9999999999877653
No 71
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.90 E-value=1e-05 Score=80.78 Aligned_cols=71 Identities=31% Similarity=0.457 Sum_probs=60.4
Q ss_pred CCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCC
Q 016362 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGI 82 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~~ 82 (390)
.|+-..+|.||.+..... +.|||+|+..+.+ |||.|+|+||+||+..|++||+|.+ ++|.|++++++-...
T Consensus 1627 ~pew~~~ge~v~~~~h~t--~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p-~~g~~vr~s~~~~~~ 1697 (1714)
T KOG0241|consen 1627 SPEWRGFGERVVTVEHTT--NVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLP-NKGGGVRVSDGLHHP 1697 (1714)
T ss_pred CchhhhcCceeEEeeccc--ceeeecchhhccC----cccccCCCCCcCccccceeEEeecC-CCCCcccchhhccCc
Confidence 356678899999866543 8999999887766 8999999999999999999999986 899999998775443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=1.9e-05 Score=77.73 Aligned_cols=232 Identities=20% Similarity=0.139 Sum_probs=126.2
Q ss_pred HhccccccEeecCCcc-cCCCC-cchhhhcCcccEEECCCC-cCCCh--HHHHHHHhcCCCCCEEEccCCC-CCCccC-C
Q 016362 128 FSKFEELTSAALPYLG-VSSPG-ANIGTIVTNLKELDLTGN-LLSDW--KDIGAFGEQLPALAVLNLSNNL-MSKEVT-G 200 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~-i~~~~-~~~~~~~~~L~~L~L~~n-~l~~~--~~~~~~l~~l~~L~~L~ls~n~-l~~~~~-~ 200 (390)
...++.|+.+.+..+. +.... ..+...+++|++|+++++ ..... .........+++|+.|+++.+. ++...- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3447888888887774 33322 255666789999998873 22111 1123345567888899988876 443211 2
Q ss_pred CC-CCCCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC----CCC---
Q 016362 201 LP-QLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC----IAE--- 271 (390)
Q Consensus 201 ~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~----l~~--- 271 (390)
++ .+++|+.|.+..|. ++...+..+...++.|++|+++++........ ......+++|+.|.+.... ++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 22 47889999888776 78888888888889999999987765321100 0112234444443322221 110
Q ss_pred ---------chhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhh
Q 016362 272 ---------WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 272 ---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 342 (390)
......+..+++++.+.+..+.+++............+. .....-...+..++.|+++.+.......+.
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~--~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT--ESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc--hHHHHHhccCCccceEecccCccccccchH
Confidence 111133456778888887777654432111100000000 000000112223688888888544433333
Q ss_pred hccC-CCCCcEEEccCCCCCC
Q 016362 343 SLDS-FPKLMDIRLSENPVSD 362 (390)
Q Consensus 343 ~l~~-l~~L~~L~l~~n~l~~ 362 (390)
.... +..++.+++++++...
T Consensus 421 ~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HHhhhhhccccCCccCccccc
Confidence 4433 6677778888777553
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=5.5e-06 Score=71.96 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCCCccEEEcCCCCCCCchhhhh-cCCCCCcCeEecCCCcccc
Q 016362 255 GFDNLQLLNLEDNCIAEWSEILK-LCQIRSLEQLYLNKNNLNR 296 (390)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~L~~n~l~~ 296 (390)
.+++|+.|.++.|.+.....+.. ...+|+|++|++++|+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 34555666666663332222211 2234666666666666554
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=2.9e-05 Score=76.41 Aligned_cols=207 Identities=24% Similarity=0.193 Sum_probs=127.3
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC-C-CCCcc----CCCCCCCCccEEEeeccc-CCHHHH
Q 016362 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-L-MSKEV----TGLPQLKSIRILVLNCTG-VNWMQV 222 (390)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n-~-l~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~ 222 (390)
.+...++.|+.|.+.++.-..-..+......+++|+.|+++.+ . +.... .....+.+|+.|+++.+. +++..+
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 4444468999999988754332235567788999999999873 1 11111 123467899999999987 887788
Q ss_pred HHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCCCCCcCeEecCCCc----ccc
Q 016362 223 EILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQIRSLEQLYLNKNN----LNR 296 (390)
Q Consensus 223 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~----l~~ 296 (390)
..+...+++|++|.+..|. +++... ......++.|++|+++.|.......+ .....+++|+.|.+.... ++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 8887789999999987777 554432 12345678899999999876532222 223457777776654432 333
Q ss_pred ccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC--------------cEEEccCCCCCC
Q 016362 297 IYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL--------------MDIRLSENPVSD 362 (390)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L--------------~~L~l~~n~l~~ 362 (390)
........... ..-.......+++|+.+.+..+.+.+......+..+|.| +.|+++.+....
T Consensus 340 ~~l~~~~~~~~----d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 340 LSLSGLLTLTS----DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHHHHhhccCc----hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 22111000000 000001145678888888888875543322345556554 777887777543
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00048 Score=65.03 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCc-CCChHHHHHHHhcCCCCCEEEccCC-CCCCccCCC
Q 016362 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSNN-LMSKEVTGL 201 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~ls~n-~l~~~~~~~ 201 (390)
+-..+..+.+++.|++++|.+...+ ...++|++|.+++|. ++ .+|..+ .++|+.|++++| .+...+
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLt---sLP~~L--P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLT---TLPGSI--PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcc---cCCchh--hhhhhheEccCcccccccc---
Confidence 4445677899999999999888776 233579999998753 33 445433 258899999987 454222
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcC-CcccEEeccCCCccccCCCCCCccCCC-CCccEEEcCCCCCCCchhhhhcC
Q 016362 202 PQLKSIRILVLNCTGVNWMQVEILKHSL-PALEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
.+|+.|.+..+... .+ ..+ ++|++|.+.++...... ..+ ..+ ++|++|++++|.....+. .+
T Consensus 112 ---~sLe~L~L~~n~~~--~L----~~LPssLk~L~I~~~n~~~~~-~lp---~~LPsSLk~L~Is~c~~i~LP~--~L- 175 (426)
T PRK15386 112 ---ESVRSLEIKGSATD--SI----KNVPNGLTSLSINSYNPENQA-RID---NLISPSLKTLSLTGCSNIILPE--KL- 175 (426)
T ss_pred ---cccceEEeCCCCCc--cc----ccCcchHhheecccccccccc-ccc---cccCCcccEEEecCCCcccCcc--cc-
Confidence 35778888766543 12 233 35778877543311110 000 112 578999999887654332 12
Q ss_pred CCCCcCeEecCCCccc
Q 016362 280 QIRSLEQLYLNKNNLN 295 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~ 295 (390)
..+|+.|.++.+...
T Consensus 176 -P~SLk~L~ls~n~~~ 190 (426)
T PRK15386 176 -PESLQSITLHIEQKT 190 (426)
T ss_pred -cccCcEEEecccccc
Confidence 258888988876543
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.18 E-value=0.0019 Score=61.12 Aligned_cols=138 Identities=18% Similarity=0.148 Sum_probs=82.7
Q ss_pred HHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCcc
Q 016362 176 AFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIV 253 (390)
Q Consensus 176 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 253 (390)
.-+..+.+++.|++++|.+...+ .+. .+|++|.+++|. ++ .++..+ .++|+.|.+++| .+..++
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLt--sLP~~L--P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLT--TLPGSI--PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcc--cCCchh--hhhhhheEccCcccccccc-------
Confidence 33566799999999999877553 332 369999998753 32 333322 257999999988 444321
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCC-CCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCC
Q 016362 254 QGFDNLQLLNLEDNCIAEWSEILKLCQI-RSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls 331 (390)
.+|+.|++..+...... .+ ++|+.|.+.+++ ......+.. --++|++|+++
T Consensus 112 ---~sLe~L~L~~n~~~~L~------~LPssLk~L~I~~~n~~~~~~lp~~------------------LPsSLk~L~Is 164 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIK------NVPNGLTSLSINSYNPENQARIDNL------------------ISPSLKTLSLT 164 (426)
T ss_pred ---cccceEEeCCCCCcccc------cCcchHhheeccccccccccccccc------------------cCCcccEEEec
Confidence 45788888776654322 22 367888875432 222111110 01578888888
Q ss_pred CCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 332 NNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 332 ~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+|.....+ +.+. .+|++|.++.|
T Consensus 165 ~c~~i~LP--~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 165 GCSNIILP--EKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCcccCc--cccc--ccCcEEEeccc
Confidence 77654332 1222 46777777665
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.98 E-value=1.9e-05 Score=76.83 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCCCEEeCCCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016362 323 QNLCCLLLGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
..+++++++.|.|++-.. .+.+..++.++.+.++.|++.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 455666666666554211 1334455566666666666553
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.71 E-value=9.4e-05 Score=72.02 Aligned_cols=182 Identities=24% Similarity=0.247 Sum_probs=128.4
Q ss_pred EEEeChhHHHHHHhccccccEeecCCcccCCCCc-chhhh----cCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEE
Q 016362 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTI----VTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLN 188 (390)
Q Consensus 116 i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~----~~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~ 188 (390)
+...|...+...+..+..|..|++++|.++..+. .+... -+.+++|++..|.+++ ...+.+.+.....++.++
T Consensus 99 l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 99 LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD 178 (478)
T ss_pred cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence 4445778889999999999999999999995443 22221 1457778888888775 345667787888999999
Q ss_pred ccCCCCCCcc-----CC----CCCCCCccEEEeecccCCHHHHHH---HHhcCCc-ccEEeccCCCccccCC-CCCCccC
Q 016362 189 LSNNLMSKEV-----TG----LPQLKSIRILVLNCTGVNWMQVEI---LKHSLPA-LEELHLMGNSISEITP-VSSPIVQ 254 (390)
Q Consensus 189 ls~n~l~~~~-----~~----~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~-L~~L~l~~n~l~~~~~-~~~~~l~ 254 (390)
++.|.+.... .. +....++++|.+++|.++...... .+...+. +.++++..|++.+... .....+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 9999874221 11 235788999999999887544333 3344455 7779999998875421 1111233
Q ss_pred CC-CCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccc
Q 016362 255 GF-DNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 255 ~l-~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
.+ ..++.++++.|.|+..... ..+..++.+++|.+++|.+.+.
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 34 6789999999999865432 4566778999999999988764
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.67 E-value=0.001 Score=63.89 Aligned_cols=94 Identities=23% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC--CCCCchhhhhccCCCCCcEEEccC
Q 016362 280 QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN--MIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+.+.+..++|++|++..+..-..+ ....|+|..|+|++| .+.....+..+. ...|++|-+.|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssl---------------sq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~G 279 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSL---------------SQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEG 279 (585)
T ss_pred CCcceeeeecccchhhchhhhhHH---------------HHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecC
Confidence 456666777777776665322211 334688999999998 555543333333 45689999999
Q ss_pred CCCCCCCCcc-hhhhhhhhhcCCceEecCcccC
Q 016362 358 NPVSDPGRGG-ISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 358 n~l~~~~~~~-~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
||+.+..... ..-..+...+|+|..|||-++.
T Consensus 280 NPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 280 NPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred CccccchhhhHHHHHHHHHhcchheeecCcccC
Confidence 9998654221 1112344588999999997764
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.52 E-value=0.012 Score=46.51 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 229 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+.+|+.+.+.. .+..+... .+..+++|+.+.+..+ +..... ..+..+++|+.+.+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETS-T--EE-TT---TTTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECC-CeeEeChh---hccccccccccccccc-ccccce-eeeecccccccccccc
Confidence 34445554442 23333322 3444445555555443 444333 3444555555555543
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.49 E-value=0.0072 Score=47.79 Aligned_cols=122 Identities=11% Similarity=0.189 Sum_probs=54.2
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
.|..+.+|+.+.+..+ +.. .....+..+++|+.+.+..+ +..+... .+..+++|+.+.+.. .+...+. ..+.
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~---~F~~~~~l~~i~~~~-~~~~i~~-~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKK-IGENAFSNCTSLKSINFPNN-LTSIGDN---AFSNCKSLESITFPN-NLKSIGD-NAFS 78 (129)
T ss_dssp TTTT-TT--EEEETST---E-E-TTTTTT-TT-SEEEESST-TSCE-TT---TTTT-TT-EEEEETS-TT-EE-T-TTTT
T ss_pred HHhCCCCCCEEEECCC-eeE-eChhhccccccccccccccc-cccccee---eeecccccccccccc-ccccccc-cccc
Confidence 3556667777776542 221 11223356667777777664 5555443 566666788888865 4444443 4566
Q ss_pred CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC
Q 016362 280 QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL 350 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L 350 (390)
.+++|+.+.+..+ ++.+. ... +..+ +|+.+.+.. .++.++. ..+..+++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~-~~~----------------f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIG-SSS----------------FSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEH-TTT----------------TTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred ccccccccccCcc-ccEEc-hhh----------------hcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 6788888888664 55553 111 4555 777777765 3333322 355666655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0024 Score=53.74 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCCCCCEEeCCCC-CCCCchhhhhccCCCCCcEEEccCCCC
Q 016362 321 PFQNLCCLLLGNN-MIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 321 ~l~~L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
..++|+.|+|++| +||+- .+..+..+++|+.|.|.+=+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchh
Confidence 3466777777766 66664 345566666666666665443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0034 Score=52.87 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=15.2
Q ss_pred CCCCCEEeCCCC-CCCCchhhhhccC-CCCCcEEEccCCC
Q 016362 322 FQNLCCLLLGNN-MIEDLASIDSLDS-FPKLMDIRLSENP 359 (390)
Q Consensus 322 l~~L~~L~Ls~N-~i~~~~~~~~l~~-l~~L~~L~l~~n~ 359 (390)
++.++.|.+.+| .+.+| .++-+.. .++|+.|+|++|+
T Consensus 124 l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred cchhhhheeccccchhhH-HHHHhcccccchheeeccCCC
Confidence 334444444444 33343 2233332 3444444444444
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.76 E-value=0.02 Score=27.85 Aligned_cols=15 Identities=47% Similarity=0.503 Sum_probs=6.7
Q ss_pred CCCEEeCCCCCCCCc
Q 016362 324 NLCCLLLGNNMIEDL 338 (390)
Q Consensus 324 ~L~~L~Ls~N~i~~~ 338 (390)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455666666655543
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.88 E-value=0.022 Score=29.79 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=10.4
Q ss_pred CCCEEeCCCCCCCCch
Q 016362 324 NLCCLLLGNNMIEDLA 339 (390)
Q Consensus 324 ~L~~L~Ls~N~i~~~~ 339 (390)
+|++|+|++|+|+.+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 3667777777776543
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.60 E-value=0.051 Score=28.35 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=6.4
Q ss_pred CCEEEccCCCCC
Q 016362 184 LAVLNLSNNLMS 195 (390)
Q Consensus 184 L~~L~ls~n~l~ 195 (390)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555554
No 87
>PTZ00243 ABC transporter; Provisional
Probab=91.96 E-value=0.23 Score=56.11 Aligned_cols=60 Identities=28% Similarity=0.514 Sum_probs=48.7
Q ss_pred CCCCCEEEeCCCceeeEEEEEeeecC--CCCCeEEEEEecCC--------------CCCCCCEECCEEEEecCCCC
Q 016362 9 YKLGQRVHSANDARRIGTVKYVGEVQ--GYSGTWLGVDWDYG--------------NGKHDGSINGVRYFQAKSQK 68 (390)
Q Consensus 9 ~~~g~~v~~~~~~~~~~tv~~~g~~~--~~~~~w~Gv~~d~~--------------~gk~~g~~~g~~yf~~~~~~ 68 (390)
-.||.||....|....|+.||+|.+. ++++..-||||+-| .+.|+|.++|.+.|+.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1560)
T PTZ00243 125 CMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSN 200 (1560)
T ss_pred cccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCC
Confidence 35899998877766779999999885 47889999999944 14689999999999887544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.86 E-value=0.34 Score=47.18 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=59.0
Q ss_pred hhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC--CCCCccCCCC--CCCCccEEEeecccCCH------HHH
Q 016362 153 TIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN--LMSKEVTGLP--QLKSIRILVLNCTGVNW------MQV 222 (390)
Q Consensus 153 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n--~l~~~~~~~~--~l~~L~~L~L~~n~l~~------~~~ 222 (390)
...+.+..++|++|.+..++.+.......|+|..|+|++| .+... .++. +...|++|.+.+|.+.. +-+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3357888999999999988888887788899999999998 44322 2232 44568899999987642 123
Q ss_pred HHHHhcCCcccEEe
Q 016362 223 EILKHSLPALEELH 236 (390)
Q Consensus 223 ~~~~~~l~~L~~L~ 236 (390)
..+...+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 34445677777765
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.95 E-value=0.3 Score=26.47 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=11.3
Q ss_pred CCCCEEeCCCCCCCCch
Q 016362 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~ 339 (390)
++|++|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45677777777776654
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.95 E-value=0.3 Score=26.47 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=11.3
Q ss_pred CCCCEEeCCCCCCCCch
Q 016362 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~ 339 (390)
++|++|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45677777777776654
No 91
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=87.52 E-value=5.9 Score=25.75 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=39.7
Q ss_pred CCCCCEEEeC--CCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeec
Q 016362 9 YKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (390)
Q Consensus 9 ~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~ 76 (390)
++|.+||.+. |+.|+.|+|.-+-++ ..|.-+=|..+|- -.|+=||+......|.|+.+.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilavE~F--~EG~MYLvaL~dY-------P~GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAVEPF--NEGTMYLVALEDY-------PAGIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEEeec--cCcEEEEEEcCcC-------CcceEEEecCCCCCcEEeeec
Confidence 4789999875 555666888777544 4466566655532 135778888877788888764
No 92
>PRK10708 hypothetical protein; Provisional
Probab=87.25 E-value=5.9 Score=25.78 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=38.8
Q ss_pred CCCCCEEEeC--CCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeee
Q 016362 9 YKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRV 75 (390)
Q Consensus 9 ~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~ 75 (390)
++|.+||.+. |+.|+.|+|.-+-++ ..|.-+=|..+|- -.|+=||+......|.|+.+
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLavE~F--~EG~MyLvaL~dY-------P~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAVEEF--SEGTMYLVSLEDY-------PLGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred CccccEEEEecCCCccccceEEEEeec--cCcEEEEEEcCcC-------CCceEEEeccCCCCceEecc
Confidence 4689999875 555677888877654 3455555555532 13567888877677888765
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.23 E-value=0.54 Score=25.66 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=12.7
Q ss_pred CCCCEEeCCCCCCCCch
Q 016362 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~ 339 (390)
.+|++|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 57788888888887654
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.63 E-value=0.011 Score=51.03 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=50.2
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC
Q 016362 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN 333 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 333 (390)
.....-+.||++.|++.... ..+..+..|..|+++.|.+.-. |.. +.+...+..+++.+|
T Consensus 39 ~~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~~--~~d----------------~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKFL--PKD----------------AKQQRETVNAASHKN 98 (326)
T ss_pred hccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhhC--hhh----------------HHHHHHHHHHHhhcc
Confidence 33455666666666654433 2334455666666666666555 443 445556666666666
Q ss_pred CCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 334 MIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 334 ~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+.+..| .++...|+++++++.+|++.
T Consensus 99 ~~~~~p--~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 99 NHSQQP--KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chhhCC--ccccccCCcchhhhccCcch
Confidence 666654 35566667777776666654
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.83 E-value=0.8 Score=24.18 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=8.8
Q ss_pred CCccEEEeecccCCHHHH
Q 016362 205 KSIRILVLNCTGVNWMQV 222 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~ 222 (390)
++|++|++++|.++...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456666666666554433
No 96
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.96 E-value=2.6 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=12.3
Q ss_pred CCccEEEeecccCCHHHHHHH
Q 016362 205 KSIRILVLNCTGVNWMQVEIL 225 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~ 225 (390)
++|++|+|++|.+.......+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456666666666665444443
No 97
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.64 E-value=1.3 Score=24.13 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=13.3
Q ss_pred CCCCEEeCCCCCCCCchh
Q 016362 323 QNLCCLLLGNNMIEDLAS 340 (390)
Q Consensus 323 ~~L~~L~Ls~N~i~~~~~ 340 (390)
++|+.|++++|+++..|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888887663
No 98
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=78.67 E-value=9.3 Score=24.92 Aligned_cols=43 Identities=33% Similarity=0.576 Sum_probs=34.3
Q ss_pred CCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCC
Q 016362 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKH 52 (390)
Q Consensus 9 ~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~ 52 (390)
|++||.|+...+ ...=||.++|+..+..+.|+--.|=+..|.+
T Consensus 1 f~~GDvV~LKSG-Gp~MTV~~v~~~~~~~~~~v~C~WFd~~~~~ 43 (53)
T PF09926_consen 1 FKIGDVVQLKSG-GPRMTVTEVGPNAGASGGWVECQWFDGHGEQ 43 (53)
T ss_pred CCCCCEEEEccC-CCCeEEEEccccccCCCCeEEEEeCCCCCcc
Confidence 689999997644 2348999999998888999888888776553
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.11 E-value=1.6 Score=23.61 Aligned_cols=15 Identities=40% Similarity=0.264 Sum_probs=7.9
Q ss_pred CCCCEEeCCCC-CCCC
Q 016362 323 QNLCCLLLGNN-MIED 337 (390)
Q Consensus 323 ~~L~~L~Ls~N-~i~~ 337 (390)
++|++|+|++| +|++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 45555555555 4444
No 100
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=75.74 E-value=3.8 Score=32.40 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEeCC-CceeeEEEEEeeecCCCCCeE-EEEEecCCC-CCC
Q 016362 6 PESYKLGQRVHSAN-DARRIGTVKYVGEVQGYSGTW-LGVDWDYGN-GKH 52 (390)
Q Consensus 6 ~~~~~~g~~v~~~~-~~~~~~tv~~~g~~~~~~~~w-~Gv~~d~~~-gk~ 52 (390)
.|.|..||||.+.- ++. -+.|-+=-+.--++.| ++|||-.|+ ..-
T Consensus 85 kp~F~LGd~V~~~f~~~~--pkqRlIlGv~lv~~~W~Y~VE~~SPtlse~ 132 (150)
T PF07154_consen 85 KPAFRLGDRVEFRFYSDG--PKQRLILGVFLVNNSWFYAVEWRSPTLSET 132 (150)
T ss_pred CCceecCCEEEEEecCCC--CceEEEEEEEEecCceEEEEEEeCCccccc
Confidence 48999999998742 111 3466665555667888 999999997 443
No 101
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.48 E-value=0.36 Score=41.96 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=56.8
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..++..+.|+++.|.+...+..+..+ ..+..|+++.|.+. .+|..+.++..+..+++..|..+..+..+...+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~---~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIK---FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHh---hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 445566667777777666555434333 66677777777665 45666666667777777777776665567777777
Q ss_pred cEEEeecccCC
Q 016362 208 RILVLNCTGVN 218 (390)
Q Consensus 208 ~~L~L~~n~l~ 218 (390)
+.+++-.+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777776654
No 102
>PHA02146 hypothetical protein
Probab=69.73 E-value=5.8 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=33.2
Q ss_pred CCCCCCEEEeCCCce-------eeEEEEEeeecCCCCCeE-EEEEecCCCCCCC
Q 016362 8 SYKLGQRVHSANDAR-------RIGTVKYVGEVQGYSGTW-LGVDWDYGNGKHD 53 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~-------~~~tv~~~g~~~~~~~~w-~Gv~~d~~~gk~~ 53 (390)
+++||...++.+..| ..|+--++-.++...+.| +|+.|....|+.+
T Consensus 2 ~iei~kkyrv~da~rf~~ehgi~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~ 55 (86)
T PHA02146 2 QIEIGKKYRVTDAERFMAEHGITNGTEFTVTNIDDDGDLYTYDISWNGRDGKSA 55 (86)
T ss_pred eeeeCceEEeccHHHHHHHhCcCCCcEEEeeccccCCCeEeecccccCccCCcc
Confidence 567777776654322 337777787888888899 9999998877654
No 103
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=67.77 E-value=4.4 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=19.6
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGY 36 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~ 36 (390)
+|.|++||+|+.. -.||--|+.|+.
T Consensus 2 ~p~f~~G~~V~a~------~~irNDGt~Pg~ 26 (75)
T PF04319_consen 2 PPRFEWGDKVRAR------KDIRNDGTFPGK 26 (75)
T ss_pred CCccCCCCEEEEE------EEeEcCCCCCCC
Confidence 6899999999984 347888877764
No 104
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=64.18 E-value=4.6 Score=22.00 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.5
Q ss_pred hhhhhhhhcCCceEecCcc
Q 016362 369 SRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 369 ~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+..+++.+|+|+.||...
T Consensus 4 YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 4 YREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHHHHCCccceecccc
Confidence 4567899999999999754
No 105
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.79 E-value=80 Score=30.86 Aligned_cols=157 Identities=16% Similarity=-0.076 Sum_probs=74.5
Q ss_pred cccEeecCCcccCCCCcchhhhc---CcccEEECCCCcCCChHHH-HHHHhcCCCCCEEEccCCCCCCc-----cC----
Q 016362 133 ELTSAALPYLGVSSPGANIGTIV---TNLKELDLTGNLLSDWKDI-GAFGEQLPALAVLNLSNNLMSKE-----VT---- 199 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~-----~~---- 199 (390)
.+++++++.|...+..+.....+ ..++.++.+...+.--..+ +-....-++|+..+++.|..+.. .+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46778888887766555222221 3456666666554320011 11223445777777777655321 11
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCC-----cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchh
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLP-----ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 274 (390)
.++.-.++ +|++..+....+.++.++-.+. .=-.+++..|...+.... .....-.++++|.+..|.+.+-..
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vl--eaci~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVL--EACIFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchh--hccccceeeeEeeccccccccccc
Confidence 13344556 7777776665544444432111 112334444433322110 011111347777777776654321
Q ss_pred -hhhcCCCCCcCeEecCCC
Q 016362 275 -ILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 275 -~~~l~~l~~L~~L~L~~n 292 (390)
+..+...+..+.+.+.+-
T Consensus 372 ~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 372 AVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred cccceeecccccccccccc
Confidence 122334456666666543
No 106
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.70 E-value=13 Score=43.82 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=29.4
Q ss_pred eCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016362 329 LLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 329 ~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
||++|+|+.++. ..|..+++|+.|+|++||+.-+|.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccc
Confidence 578899988753 678888899999999999887774
No 107
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=48.73 E-value=25 Score=27.68 Aligned_cols=20 Identities=45% Similarity=0.936 Sum_probs=11.9
Q ss_pred EEEec--CCCCCC-CC--EECCEEE
Q 016362 42 GVDWD--YGNGKH-DG--SINGVRY 61 (390)
Q Consensus 42 Gv~~d--~~~gk~-~g--~~~g~~y 61 (390)
+|.|- ||.|+| +| .++|.+|
T Consensus 106 vIHWTH~dp~~~h~~Gwl~~nG~~Y 130 (131)
T PF11948_consen 106 VIHWTHHDPRGRHPDGWLKHNGQRY 130 (131)
T ss_pred EEEeeccCCCCCCCCeeEEECCEEC
Confidence 45565 455776 34 6667776
No 108
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=32.52 E-value=91 Score=24.62 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCCCCCEEEeCCCceee----EEEEEeeecCCCCCeEEEEEecCC
Q 016362 8 SYKLGQRVHSANDARRI----GTVKYVGEVQGYSGTWLGVDWDYG 48 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~----~tv~~~g~~~~~~~~w~Gv~~d~~ 48 (390)
.|..|+-|=++.|+.-+ |.|||.-....-+-.|+||..+..
T Consensus 71 kfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~~Rk~i~V~~~~~ 115 (144)
T KOG4600|consen 71 KFHPGDNVGIGKDHTIFALEEGRVRFEKSKITPPRKWIGVDPRGG 115 (144)
T ss_pred ccCCCcccccCCcceEEEeeccEEEEEEccCCCCcceEEEeecCC
Confidence 35566666665554422 567776544333566777766644
No 109
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=32.11 E-value=44 Score=24.94 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=24.8
Q ss_pred CCCCCCCEEEeCCCceeeEEE-------EE---eeecCCCCCeEEEEEe
Q 016362 7 ESYKLGQRVHSANDARRIGTV-------KY---VGEVQGYSGTWLGVDW 45 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv-------~~---~g~~~~~~~~w~Gv~~ 45 (390)
..|++||+|.+..| ++| +| .|.|-+..+.-+||+.
T Consensus 33 ~~y~~Gd~V~I~~d----~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v 77 (98)
T PRK04306 33 QEFEEGDKVHIVID----PSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV 77 (98)
T ss_pred HhccCCCEEEEEec----CceecCCccccccCCCEEEEeecCeEEEEEE
Confidence 57999999998765 333 33 3455666777888887
No 110
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=30.49 E-value=47 Score=28.28 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=15.9
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeec
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
.+|++||+|.+++ ..|+|..+|..
T Consensus 59 ~pf~vGD~I~i~~---~~G~V~~I~l~ 82 (206)
T PF00924_consen 59 RPFKVGDRIEIGG---VEGRVEEIGLR 82 (206)
T ss_dssp -SS-TT-EEESSS----EEEEEEE-SS
T ss_pred CCccCCCEEEEEE---eehHHHhcCcc
Confidence 5799999999964 44999999844
No 111
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=27.84 E-value=30 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.542 Sum_probs=21.1
Q ss_pred CCCCCCCEEEeC--CCceeeEEEEEeeecCCC----CCeEEEEEec
Q 016362 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGY----SGTWLGVDWD 46 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~g~~~~~----~~~w~Gv~~d 46 (390)
-.+.+|-||... +++ ....+|.|+|.+- +..|-|-+|.
T Consensus 37 ~~~~~GmRfkM~fE~ed--s~~~~~~GtI~~v~~~dp~~w~~S~WR 80 (83)
T PF06507_consen 37 HPWSVGMRFKMRFETED--SSERRWQGTIVGVSDLDPIRWPGSKWR 80 (83)
T ss_pred CCCCCCcEEEEEeccCC--CccceeeeEEeEeeccCCCCCCCCCcc
Confidence 467899999854 221 1445666666442 2345555553
No 112
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=27.46 E-value=61 Score=28.12 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=20.3
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc
Q 016362 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE 244 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 244 (390)
.+|+.-++++.-+....+...-.-+.+++.-.|.+|++.+
T Consensus 171 a~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 171 AKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFED 210 (302)
T ss_pred hhhcccccccchhhhhhhhhhhheecccccccccCcCCCC
Confidence 3444444444433333333333345567777777777654
No 113
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=25.99 E-value=60 Score=17.48 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=6.7
Q ss_pred ccEEECCCCcCCC
Q 016362 158 LKELDLTGNLLSD 170 (390)
Q Consensus 158 L~~L~L~~n~l~~ 170 (390)
|++|.|....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 4555555555443
No 114
>PRK04980 hypothetical protein; Provisional
Probab=23.03 E-value=1.1e+02 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=16.4
Q ss_pred CCCCCCCEEEeC--CCceeeEEEEEe
Q 016362 7 ESYKLGQRVHSA--NDARRIGTVKYV 30 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~ 30 (390)
..+++||+|.+. ++.+.+|+|+-.
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~ 55 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVL 55 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEE
Confidence 568899999984 444566666554
No 115
>PF13403 Hint_2: Hint domain
Probab=21.66 E-value=1.2e+02 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.9
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeec
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
..+++||+|...++ ..-+|+|+|..
T Consensus 19 e~L~~GD~V~T~dg--g~~~V~wig~~ 43 (147)
T PF13403_consen 19 EDLRPGDRVLTRDG--GFQPVRWIGRR 43 (147)
T ss_pred eccCCCCEEEecCC--CEEEEEEEEEE
Confidence 57889999998765 45789999954
No 116
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=21.38 E-value=1.2e+02 Score=22.39 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=9.1
Q ss_pred CCCCCCCCEEEeC
Q 016362 6 PESYKLGQRVHSA 18 (390)
Q Consensus 6 ~~~~~~g~~v~~~ 18 (390)
|+++++||+|.+.
T Consensus 51 ~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 51 DFDIKVGDKVIFS 63 (91)
T ss_pred cccccCCCEEEEc
Confidence 4667777777764
No 117
>PF10816 DUF2760: Domain of unknown function (DUF2760); InterPro: IPR021212 This is a bacterial family of uncharacterised proteins.
Probab=21.36 E-value=2.8e+02 Score=21.61 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCCEEEeCCCceeeEEEEEeeecCCCC---Ce-----EEEEEecCCC
Q 016362 10 KLGQRVHSANDARRIGTVKYVGEVQGYS---GT-----WLGVDWDYGN 49 (390)
Q Consensus 10 ~~g~~v~~~~~~~~~~tv~~~g~~~~~~---~~-----w~Gv~~d~~~ 49 (390)
+-|+||.+..+. ....||..|.|.|.+ |. |...+..=|.
T Consensus 63 ~Egsrvtv~~gf-da~~irLtGnV~G~pPf~G~L~H~GWra~~v~LPk 109 (125)
T PF10816_consen 63 EEGSRVTVPAGF-DASAIRLTGNVVGEPPFTGTLVHRGWRATEVRLPK 109 (125)
T ss_pred CCCCeEeccCCC-CccceEEEeeecccCCCceeEeeCCeEeeEEECCC
Confidence 458999987553 458899999998753 43 6665555454
No 118
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=21.32 E-value=1.2e+02 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=19.3
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeec
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
..|+|||+|.+++ ..|||.-+|..
T Consensus 128 rpf~vGD~I~i~~---~~G~V~~I~~r 151 (286)
T PRK10334 128 RPFRAGEYVDLGG---VAGTVLSVQIF 151 (286)
T ss_pred CCCCCCCEEEECC---EEEEEEEEEeE
Confidence 5799999999954 45999999843
No 119
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=21.06 E-value=94 Score=23.14 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=18.0
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQ 34 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~ 34 (390)
|..=.||++|.+... ..|||.|.+.
T Consensus 2 m~~~~IGs~ISlisk----~~iRYeG~L~ 26 (96)
T PF12701_consen 2 MADPYIGSKISLISK----SDIRYEGILY 26 (96)
T ss_dssp -CCCCTTCEEEEEET----TTEEEEEEEE
T ss_pred ccccccCCEEEEEEC----CCcEEEEEEE
Confidence 456679999997643 3399999773
No 120
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=20.33 E-value=89 Score=20.38 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=19.9
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCC--CeEEEEEecCCCCCCCCEE
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYS--GTWLGVDWDYGNGKHDGSI 56 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~--~~w~Gv~~d~~~gk~~g~~ 56 (390)
..|+.|+||...+-+.+.=||.- .+|.. ..+=.+.=||-.|+.+|++
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~Ti~L---~~G~~fhThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKHTITL---EPGGEFHTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp -S--TT-EEEEEETT--EEEEE-----TT-EEEETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCCEEEEccCCCCeeeEEE---CCCCeEEcCccccchhheecCCCcEE
Confidence 46889999998765443333332 22211 1123345566667776654
No 121
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.22 E-value=1.6e+02 Score=21.23 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=19.2
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEee
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVG 31 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g 31 (390)
.++++||+|...++ -+|||.-++
T Consensus 36 ~~L~~Gd~VvT~gG--i~G~V~~i~ 58 (84)
T TIGR00739 36 ESLKKGDKVLTIGG--IIGTVTKIA 58 (84)
T ss_pred HhCCCCCEEEECCC--eEEEEEEEe
Confidence 46899999999886 669998876
No 122
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.15 E-value=70 Score=38.30 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=28.4
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCch
Q 016362 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWS 273 (390)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 273 (390)
+|++|+|+.+... .+..+++|+.|+|++|.+...-
T Consensus 1 DLSnN~LstLp~g---~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEG---ICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChH---HhccCCCceEEEeeCCcccccc
Confidence 5788999988765 6778889999999999887543
Done!