Query 016362
Match_columns 390
No_of_seqs 318 out of 3793
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 8.5E-26 2.9E-30 209.9 12.5 231 122-387 69-310 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-27 1.6E-31 217.0 2.4 230 123-387 67-300 (313)
3 2z66_A Variable lymphocyte rec 99.9 1E-25 3.5E-30 207.4 10.5 209 128-363 48-263 (306)
4 3rgz_A Protein brassinosteroid 99.9 3.1E-25 1E-29 229.0 12.1 242 131-387 393-713 (768)
5 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.2E-29 210.5 15.0 232 125-386 96-403 (455)
6 3o6n_A APL1; leucine-rich repe 99.9 1.6E-24 5.5E-29 206.2 14.8 255 115-386 51-347 (390)
7 3o6n_A APL1; leucine-rich repe 99.9 8.4E-25 2.9E-29 208.2 12.4 226 126-362 87-353 (390)
8 2id5_A Lingo-1, leucine rich r 99.9 2.1E-24 7E-29 210.9 14.4 248 125-386 49-328 (477)
9 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-24 8.2E-29 196.2 13.8 218 120-364 22-241 (285)
10 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-25 7.5E-30 205.8 6.6 222 132-387 50-277 (313)
11 2id5_A Lingo-1, leucine rich r 99.9 4.8E-24 1.7E-28 208.3 16.5 232 125-364 73-336 (477)
12 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-24 6.1E-29 200.1 12.1 239 126-386 28-270 (317)
13 3zyj_A Leucine-rich repeat-con 99.9 5.1E-24 1.7E-28 206.0 15.7 212 126-364 82-295 (440)
14 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.7E-28 195.9 18.7 239 128-387 84-342 (347)
15 1ozn_A Reticulon 4 receptor; N 99.9 8.9E-24 3E-28 192.4 16.4 219 135-387 14-234 (285)
16 3oja_A Leucine-rich immune mol 99.9 2E-24 6.7E-29 211.3 12.1 253 110-385 8-269 (487)
17 3v47_A TOLL-like receptor 5B a 99.9 2.1E-24 7.1E-29 209.5 12.1 249 127-387 74-380 (455)
18 3zyi_A Leucine-rich repeat-con 99.9 4.7E-24 1.6E-28 207.0 14.3 212 126-364 93-306 (452)
19 3oja_B Anopheles plasmodium-re 99.9 5.8E-24 2E-28 213.4 15.0 122 122-246 64-187 (597)
20 1xku_A Decorin; proteoglycan, 99.9 1.7E-23 5.9E-28 194.6 17.0 230 127-387 71-302 (330)
21 3oja_B Anopheles plasmodium-re 99.9 6.8E-24 2.3E-28 212.9 14.1 241 126-387 93-354 (597)
22 3t6q_A CD180 antigen; protein- 99.9 1.8E-23 6.2E-28 210.2 16.9 227 127-361 273-513 (606)
23 4eco_A Uncharacterized protein 99.9 2.5E-24 8.4E-29 217.5 10.6 250 122-387 263-575 (636)
24 4fmz_A Internalin; leucine ric 99.9 4.8E-23 1.6E-27 192.8 18.4 214 128-361 128-346 (347)
25 3rgz_A Protein brassinosteroid 99.9 5.5E-24 1.9E-28 219.6 13.1 250 123-387 358-689 (768)
26 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.8E-28 190.5 15.0 206 128-364 6-211 (290)
27 1wwl_A Monocyte differentiatio 99.9 6.1E-24 2.1E-28 196.1 11.4 209 128-362 91-310 (312)
28 4fcg_A Uncharacterized protein 99.9 6E-24 2E-28 197.5 10.9 220 114-362 86-315 (328)
29 4ecn_A Leucine-rich repeat pro 99.9 1.5E-23 5.1E-28 216.6 14.6 249 122-387 505-815 (876)
30 3zyj_A Leucine-rich repeat-con 99.9 9.1E-24 3.1E-28 204.3 12.2 233 120-387 54-288 (440)
31 1xku_A Decorin; proteoglycan, 99.9 1E-23 3.5E-28 196.1 11.8 227 125-387 93-328 (330)
32 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.4E-28 203.9 12.1 233 120-387 65-299 (452)
33 4eco_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 214.5 10.4 224 150-387 201-466 (636)
34 2o6q_A Variable lymphocyte rec 99.9 9.1E-23 3.1E-27 184.2 16.7 205 133-365 17-222 (270)
35 3t6q_A CD180 antigen; protein- 99.9 2E-23 6.8E-28 209.9 12.7 244 133-387 255-509 (606)
36 2z66_A Variable lymphocyte rec 99.9 2.1E-24 7.3E-29 198.5 4.9 228 132-387 28-257 (306)
37 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-23 5.1E-28 208.3 11.3 165 125-295 43-209 (549)
38 1h6u_A Internalin H; cell adhe 99.9 6.3E-23 2.2E-27 188.9 14.2 194 129-362 38-231 (308)
39 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-23 1.3E-27 192.4 12.8 229 127-387 73-303 (332)
40 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.3E-27 197.1 17.1 235 128-387 64-340 (466)
41 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5.1E-28 210.9 9.4 203 155-386 349-553 (606)
42 2z80_A TOLL-like receptor 2, v 99.9 1E-23 3.5E-28 198.0 7.5 229 127-363 71-316 (353)
43 3o53_A Protein LRIM1, AGAP0063 99.9 7.4E-24 2.5E-28 196.0 6.2 208 125-359 51-273 (317)
44 4ecn_A Leucine-rich repeat pro 99.9 9.8E-23 3.3E-27 210.5 14.7 245 124-387 481-785 (876)
45 2ca6_A RAN GTPase-activating p 99.9 3.4E-24 1.2E-28 203.7 3.4 174 122-295 22-229 (386)
46 2z62_A TOLL-like receptor 4, v 99.9 5.1E-23 1.7E-27 186.5 10.5 208 132-364 28-240 (276)
47 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-23 8.7E-28 193.6 8.7 226 125-387 95-329 (332)
48 2e3i_A Restin; CAP-Gly, cytopl 99.9 7.6E-23 2.6E-27 146.4 8.7 79 7-88 1-79 (86)
49 2z0w_A CAP-Gly domain-containi 99.9 3.4E-23 1.2E-27 151.3 6.8 88 4-94 6-93 (96)
50 1o6v_A Internalin A; bacterial 99.9 6E-22 2.1E-26 192.9 17.5 206 155-387 176-384 (466)
51 4b6m_A Tubulin-specific chaper 99.9 8E-23 2.7E-27 144.3 7.8 75 5-81 2-77 (84)
52 3rdv_A CAP-Gly domain-containi 99.9 1.1E-22 3.7E-27 140.7 8.2 70 7-79 1-70 (72)
53 4glp_A Monocyte differentiatio 99.9 3E-23 1E-27 191.3 7.2 209 130-362 89-308 (310)
54 1ziw_A TOLL-like receptor 3; i 99.9 5E-22 1.7E-26 202.4 16.9 138 128-272 45-186 (680)
55 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-23 1.2E-27 204.3 8.1 109 125-242 38-150 (520)
56 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-22 1.2E-26 197.1 15.0 246 125-387 62-477 (520)
57 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-21 7.8E-26 188.0 19.9 230 127-388 59-296 (457)
58 3rfs_A Internalin B, repeat mo 99.9 2.9E-22 1E-26 181.1 12.8 157 130-297 39-196 (272)
59 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-22 1.5E-26 202.9 15.4 252 127-387 324-618 (680)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.7E-27 201.4 12.1 88 126-218 70-159 (562)
61 1wwl_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 190.8 5.6 236 130-387 41-305 (312)
62 3oja_A Leucine-rich immune mol 99.9 3.2E-23 1.1E-27 202.7 5.4 211 126-356 52-270 (487)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-21 8.5E-26 193.0 18.6 246 125-387 93-506 (562)
64 3vq2_A TLR4, TOLL-like recepto 99.9 5.5E-23 1.9E-27 206.7 6.6 240 128-387 281-530 (606)
65 2z80_A TOLL-like receptor 2, v 99.9 4.1E-22 1.4E-26 187.0 11.9 229 130-387 29-286 (353)
66 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-21 7.2E-26 192.8 17.2 192 183-387 311-506 (549)
67 2ast_B S-phase kinase-associat 99.9 9.5E-22 3.2E-26 183.1 13.7 229 125-381 61-299 (336)
68 3rfs_A Internalin B, repeat mo 99.9 1.5E-21 5.3E-26 176.4 14.4 204 131-364 18-221 (272)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-21 6E-26 194.8 16.1 213 131-387 80-293 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 8.9E-22 3.1E-26 178.3 11.6 218 136-387 11-233 (276)
71 1lpl_A Hypothetical 25.4 kDa p 99.9 4.1E-22 1.4E-26 145.7 7.5 74 7-81 10-85 (95)
72 2o6q_A Variable lymphocyte rec 99.9 3E-21 1E-25 174.3 14.8 198 156-387 16-214 (270)
73 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-21 1.2E-25 186.8 16.3 208 128-362 38-247 (457)
74 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-21 5.4E-26 196.6 13.9 115 127-243 71-186 (635)
75 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.4E-26 177.9 14.2 202 138-387 25-226 (308)
76 2cp2_A CLIP-115, KIAA0291; mic 99.9 9.5E-22 3.3E-26 143.1 8.6 74 5-81 15-88 (95)
77 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-22 5.1E-27 211.0 5.9 248 126-387 67-371 (844)
78 1p9a_G Platelet glycoprotein I 99.9 2.8E-21 9.6E-26 176.3 12.8 195 155-387 9-204 (290)
79 2cp3_A CLIP-115, KIAA0291; mic 99.9 1.9E-21 6.4E-26 138.6 8.9 71 6-79 5-75 (84)
80 3goz_A Leucine-rich repeat-con 99.9 2.4E-22 8.4E-27 189.2 5.5 224 124-360 14-265 (362)
81 3j0a_A TOLL-like receptor 5; m 99.9 4.7E-22 1.6E-26 207.2 8.0 250 125-387 41-347 (844)
82 2cp0_A Clipr-59 protein, clipr 99.9 1.8E-21 6.3E-26 141.6 8.5 70 7-79 15-84 (95)
83 2ca6_A RAN GTPase-activating p 99.8 3.8E-22 1.3E-26 189.6 5.9 246 104-362 34-317 (386)
84 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-23 3E-27 198.3 1.5 280 104-387 87-407 (461)
85 1whh_A Clipr-59; microtubule b 99.8 2.4E-21 8.1E-26 142.5 8.4 73 6-81 23-95 (102)
86 1h6t_A Internalin B; cell adhe 99.8 2E-21 6.9E-26 177.3 10.0 211 136-389 28-238 (291)
87 2e3h_A Restin; CAP-Gly, cytopl 99.8 3.1E-21 1E-25 139.2 8.7 71 8-81 1-71 (90)
88 1z7x_W Ribonuclease inhibitor; 99.8 5.2E-22 1.8E-26 192.9 6.2 263 121-386 45-349 (461)
89 2z63_A TOLL-like receptor 4, v 99.8 1E-21 3.4E-26 195.9 7.5 188 155-364 346-534 (570)
90 1ixd_A Cylindromatosis tumour- 99.8 3.1E-21 1.1E-25 142.8 8.2 77 7-84 16-93 (104)
91 1whk_A 1700024K14RIK, riken cD 99.8 2.5E-21 8.5E-26 139.9 7.4 72 6-79 10-81 (91)
92 1txq_A Dynactin 1; protein com 99.8 3.5E-21 1.2E-25 140.2 8.2 72 7-80 11-82 (93)
93 2z63_A TOLL-like receptor 4, v 99.8 3E-21 1E-25 192.5 10.6 244 124-387 274-527 (570)
94 1whj_A 1700024K14RIK, riken cD 99.8 5E-21 1.7E-25 140.8 9.0 71 7-80 23-93 (102)
95 2coz_A CAP350, centrosome-asso 99.8 5.2E-21 1.8E-25 145.0 8.9 71 6-79 29-99 (122)
96 3m19_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 168.1 13.1 178 133-362 15-193 (251)
97 2cow_A Kinesin-like protein KI 99.8 5.1E-21 1.8E-25 140.2 8.4 72 6-80 21-92 (100)
98 2xwt_C Thyrotropin receptor; s 99.8 4.8E-21 1.7E-25 169.7 9.1 195 133-358 32-236 (239)
99 2cp5_A Restin; microtubule bin 99.8 6.4E-21 2.2E-25 147.5 8.4 73 6-81 62-134 (141)
100 1whg_A Tubulin specific chaper 99.8 8.2E-21 2.8E-25 142.8 8.1 74 7-81 31-106 (113)
101 2coy_A Dynactin-1; microtubule 99.8 1.1E-20 3.6E-25 141.6 8.5 71 7-79 32-102 (112)
102 4glp_A Monocyte differentiatio 99.8 1.5E-21 5E-26 179.9 3.9 222 134-387 66-303 (310)
103 1jl5_A Outer protein YOPM; leu 99.8 2.7E-20 9.4E-25 180.3 12.9 229 127-387 148-405 (454)
104 3m19_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 163.6 14.1 166 121-295 26-192 (251)
105 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-19 4.7E-24 181.1 17.6 209 132-387 61-270 (622)
106 2cp6_A Restin; microtubule bin 99.8 2.6E-20 9.1E-25 148.5 9.5 72 7-81 37-108 (172)
107 1whl_A Cylindromatosis tumor s 99.8 2.1E-20 7.1E-25 137.2 8.0 73 7-80 6-87 (95)
108 1m9s_A Internalin B; cell inva 99.8 1.9E-20 6.5E-25 187.0 10.2 169 156-362 43-211 (605)
109 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4E-25 167.2 7.2 203 144-387 23-235 (239)
110 1jl5_A Outer protein YOPM; leu 99.8 3.7E-19 1.3E-23 172.3 15.9 206 133-361 174-409 (454)
111 3goz_A Leucine-rich repeat-con 99.8 8.6E-21 2.9E-25 178.6 4.0 236 137-387 3-262 (362)
112 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.1E-24 177.3 14.3 195 132-377 59-253 (571)
113 2ast_B S-phase kinase-associat 99.8 8.3E-20 2.8E-24 169.9 9.0 224 132-387 47-281 (336)
114 1xeu_A Internalin C; cellular 99.8 4E-20 1.4E-24 166.2 5.6 169 131-362 18-186 (263)
115 1h6t_A Internalin B; cell adhe 99.8 6E-19 2E-23 160.9 12.5 174 129-339 43-216 (291)
116 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.1E-23 152.1 14.8 178 185-388 22-200 (229)
117 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.4E-23 171.7 15.2 175 128-339 39-213 (605)
118 4ezg_A Putative uncharacterize 99.8 1.2E-18 4.2E-23 149.5 10.7 153 180-362 42-195 (197)
119 4g8a_A TOLL-like receptor 4; l 99.8 2E-18 7E-23 173.8 11.6 187 155-364 370-583 (635)
120 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-18 2.2E-22 147.6 12.7 156 185-364 14-169 (220)
121 2v9t_B SLIT homolog 2 protein 99.7 1.2E-17 4.1E-22 145.9 12.5 134 206-362 33-166 (220)
122 1whm_A Cylindromatosis tumor s 99.7 4.8E-18 1.6E-22 120.8 7.8 71 7-78 8-82 (92)
123 2o6s_A Variable lymphocyte rec 99.7 2.8E-18 9.5E-23 148.5 8.1 149 183-361 29-178 (208)
124 4ay9_X Follicle-stimulating ho 99.7 1.6E-18 5.5E-23 162.3 7.0 229 120-386 20-254 (350)
125 3ogk_B Coronatine-insensitive 99.7 2.5E-18 8.7E-23 172.1 8.6 259 123-388 155-523 (592)
126 4ay9_X Follicle-stimulating ho 99.7 3.9E-18 1.3E-22 159.7 8.2 217 135-387 12-235 (350)
127 1xeu_A Internalin C; cellular 99.7 3.1E-18 1.1E-22 153.8 7.1 152 127-297 36-187 (263)
128 2o6s_A Variable lymphocyte rec 99.7 4.9E-18 1.7E-22 146.9 7.9 180 135-349 10-190 (208)
129 2xot_A Amphoterin-induced prot 99.7 3.4E-18 1.2E-22 160.8 7.2 181 159-364 21-205 (361)
130 3cvr_A Invasion plasmid antige 99.7 3.3E-17 1.1E-21 162.0 12.6 174 156-387 59-239 (571)
131 3ogk_B Coronatine-insensitive 99.7 1.1E-18 3.8E-23 174.7 1.8 239 121-382 282-542 (592)
132 4ezg_A Putative uncharacterize 99.7 4.1E-17 1.4E-21 139.9 11.0 154 129-297 41-196 (197)
133 1dce_A Protein (RAB geranylger 99.7 5.2E-19 1.8E-23 175.5 -2.7 126 231-385 442-567 (567)
134 2v9t_B SLIT homolog 2 protein 99.7 6.7E-17 2.3E-21 141.1 9.7 153 159-338 14-167 (220)
135 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5E-21 149.6 12.6 172 184-386 20-197 (361)
136 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-16 5.6E-21 138.6 9.9 154 135-297 14-168 (220)
137 3e6j_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 138.1 10.6 153 134-297 21-174 (229)
138 2p1m_B Transport inhibitor res 99.7 6.7E-17 2.3E-21 161.8 7.1 259 124-387 97-441 (594)
139 2p1m_B Transport inhibitor res 99.6 1.8E-17 6E-22 166.0 0.4 156 204-382 371-535 (594)
140 2je0_A Acidic leucine-rich nuc 99.6 5.8E-16 2E-20 126.4 9.5 132 228-387 15-149 (149)
141 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 8.8E-20 126.2 10.8 134 228-389 17-151 (176)
142 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 127.0 8.9 132 229-388 23-157 (168)
143 1dce_A Protein (RAB geranylger 99.6 1.2E-16 4.1E-21 158.5 1.1 188 120-330 360-567 (567)
144 2ell_A Acidic leucine-rich nuc 99.6 9.4E-16 3.2E-20 127.8 6.2 86 156-244 24-109 (168)
145 3sb4_A Hypothetical leucine ri 99.6 1E-14 3.6E-19 135.1 12.0 102 256-384 225-327 (329)
146 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.7E-19 124.2 10.2 130 185-337 11-140 (192)
147 1ds9_A Outer arm dynein; leuci 99.6 3.2E-17 1.1E-21 140.7 -6.4 170 176-389 12-185 (198)
148 2je0_A Acidic leucine-rich nuc 99.5 1.2E-15 4.2E-20 124.4 2.7 108 228-357 40-149 (149)
149 4b8c_D Glucose-repressible alc 99.5 2E-15 7E-20 154.2 4.2 213 132-361 173-404 (727)
150 1w8a_A SLIT protein; signaling 99.5 1.7E-14 5.7E-19 123.0 9.3 133 207-364 10-142 (192)
151 2wfh_A SLIT homolog 2 protein 99.5 6.6E-14 2.2E-18 119.4 11.7 127 185-336 13-139 (193)
152 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-15 1.6E-19 124.6 3.0 109 231-361 43-153 (176)
153 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.6E-18 115.7 12.0 111 230-362 28-138 (177)
154 2wfh_A SLIT homolog 2 protein 99.5 4E-14 1.4E-18 120.8 8.3 131 207-364 12-142 (193)
155 2o6r_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 114.3 11.7 130 185-338 10-139 (177)
156 3un9_A NLR family member X1; l 99.5 7.1E-15 2.4E-19 138.3 0.5 193 155-361 71-283 (372)
157 3sb4_A Hypothetical leucine ri 99.4 1.9E-14 6.4E-19 133.4 2.0 198 131-355 48-328 (329)
158 3un9_A NLR family member X1; l 99.4 2E-14 6.8E-19 135.3 1.0 169 181-362 71-253 (372)
159 4b8c_D Glucose-repressible alc 99.4 2.4E-13 8.3E-18 138.8 8.9 177 156-362 173-355 (727)
160 3g39_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 105.9 12.1 109 231-364 10-118 (170)
161 1ds9_A Outer arm dynein; leuci 99.4 5.4E-15 1.8E-19 126.7 -5.8 161 126-297 12-187 (198)
162 2r9u_A Variable lymphocyte rec 99.4 6.6E-12 2.2E-16 105.1 12.3 108 232-364 14-121 (174)
163 3g39_A Variable lymphocyte rec 99.2 1.7E-11 5.9E-16 102.1 8.7 86 205-295 30-115 (170)
164 2r9u_A Variable lymphocyte rec 99.2 2.3E-11 7.8E-16 101.7 8.8 104 186-296 16-119 (174)
165 4fdw_A Leucine rich hypothetic 99.2 8E-11 2.7E-15 111.7 10.8 196 133-362 158-359 (401)
166 4fdw_A Leucine rich hypothetic 99.2 1.1E-10 3.8E-15 110.7 10.4 219 127-387 131-354 (401)
167 2ra8_A Uncharacterized protein 99.1 1.4E-10 4.9E-15 108.2 10.3 211 131-359 106-341 (362)
168 2ifg_A High affinity nerve gro 99.0 7.7E-10 2.6E-14 102.9 11.1 81 210-297 13-95 (347)
169 3rw6_A Nuclear RNA export fact 99.0 5.8E-11 2E-15 105.5 2.3 117 257-390 141-263 (267)
170 2ifg_A High affinity nerve gro 99.0 1.8E-10 6.2E-15 107.2 5.0 104 186-296 12-117 (347)
171 2ra8_A Uncharacterized protein 98.9 1.5E-09 5.1E-14 101.3 4.9 185 156-362 107-321 (362)
172 1io0_A Tropomodulin; LRR prote 98.8 7.5E-09 2.6E-13 87.2 8.4 122 122-243 26-164 (185)
173 1io0_A Tropomodulin; LRR prote 98.8 1.4E-09 4.8E-14 91.7 2.0 129 221-362 27-165 (185)
174 3e4g_A ATP synthase subunit S, 98.8 3.3E-09 1.1E-13 87.6 4.1 104 257-382 61-171 (176)
175 3rw6_A Nuclear RNA export fact 98.5 3.1E-08 1.1E-12 87.9 3.2 81 155-236 169-257 (267)
176 3e4g_A ATP synthase subunit S, 98.4 4.4E-08 1.5E-12 80.9 1.7 84 282-389 61-150 (176)
177 4fs7_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 86.7 7.6 219 127-383 157-393 (394)
178 4fs7_A Uncharacterized protein 98.4 7.4E-07 2.5E-11 84.2 8.4 199 148-386 154-374 (394)
179 4gt6_A Cell surface protein; l 98.2 5E-06 1.7E-10 78.5 9.7 83 127-214 109-191 (394)
180 1pgv_A TMD-1, tropomodulin TMD 98.2 9.9E-07 3.4E-11 74.1 3.7 128 221-361 32-170 (197)
181 4gt6_A Cell surface protein; l 97.9 7.7E-05 2.6E-09 70.2 12.0 219 127-385 132-385 (394)
182 1pgv_A TMD-1, tropomodulin TMD 97.9 3.2E-05 1.1E-09 65.0 7.9 118 123-241 32-168 (197)
183 4h09_A Hypothetical leucine ri 97.8 9.6E-05 3.3E-09 69.1 10.8 59 319-385 282-340 (379)
184 4h09_A Hypothetical leucine ri 97.3 0.0007 2.4E-08 63.2 9.3 131 201-358 213-343 (379)
185 3rfe_A Platelet glycoprotein I 97.2 0.00076 2.6E-08 52.7 6.4 59 285-364 11-71 (130)
186 3rfe_A Platelet glycoprotein I 96.4 0.0059 2E-07 47.5 6.1 55 234-295 12-68 (130)
187 2zzd_A Thiocyanate hydrolase s 36.1 11 0.00036 28.5 0.8 32 6-38 34-65 (126)
188 2lz0_A Uncharacterized protein 30.1 67 0.0023 22.9 4.3 47 241-292 7-53 (100)
189 2lz0_A Uncharacterized protein 28.4 78 0.0027 22.5 4.4 38 319-358 16-53 (100)
190 3dkm_A E3 ubiquitin-protein li 25.0 1.2E+02 0.004 21.2 4.5 35 8-47 21-64 (89)
191 3udc_A Small-conductance mecha 24.9 58 0.002 28.3 3.8 23 7-32 127-149 (285)
192 1ugp_B NitrIle hydratase beta 24.5 26 0.0009 29.4 1.4 32 6-38 136-167 (226)
193 3hht_B NitrIle hydratase beta 22.9 27 0.00093 29.4 1.1 15 5-19 138-152 (229)
194 2vv5_A MSCS, small-conductance 22.3 56 0.0019 28.4 3.2 23 7-32 128-150 (286)
195 3qyh_B CO-type nitrIle hydrata 22.3 28 0.00096 29.1 1.1 15 5-19 127-141 (219)
196 2fb7_A SM-like protein, LSM-14 21.5 44 0.0015 23.7 1.8 24 7-34 14-37 (95)
197 2vxe_A CG10686-PA; EDC3, CAR-1 21.4 50 0.0017 23.0 2.0 24 7-34 8-31 (88)
198 3a8g_B NitrIle hydratase subun 21.4 21 0.00073 29.6 0.2 30 6-36 120-149 (212)
199 2zkr_q 60S ribosomal protein L 20.5 40 0.0014 26.5 1.5 40 6-49 31-80 (160)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.5e-26 Score=209.95 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=192.0
Q ss_pred hHHHHHH--hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 122 DKIQDKF--SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 122 ~~i~~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
..++..+ .....++.|+++++.+..+++.+.. +++|++|+|++|.+. .+|..+..+++|++|++++|.+...++
T Consensus 69 ~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp HHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG-GTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred hhhHHHHhcccccceeEEEccCCCchhcChhhhh-CCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcH
Confidence 4444444 3458899999999999988888887 599999999999998 467778999999999999999996655
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHH---------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILK---------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 270 (390)
.+..+++|++|++++|.+.. .++..+ ..+++|++|++++|.++.++ ..+..+++|+.|+|++|.++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----ASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----GGGGGCTTCCEEEEESSCCC
T ss_pred HHhcCcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcch----HhhcCCCCCCEEEccCCCCC
Confidence 78999999999999986654 233222 24899999999999998543 35888999999999999999
Q ss_pred CchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC
Q 016362 271 EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL 350 (390)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L 350 (390)
+.++ .+..+++|++|++++|.+.+.. |.. +..+++|++|+|++|++.+. .+..+..+++|
T Consensus 220 ~l~~--~l~~l~~L~~L~Ls~n~~~~~~-p~~----------------~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L 279 (328)
T 4fcg_A 220 ALGP--AIHHLPKLEELDLRGCTALRNY-PPI----------------FGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279 (328)
T ss_dssp CCCG--GGGGCTTCCEEECTTCTTCCBC-CCC----------------TTCCCCCCEEECTTCTTCCB-CCTTGGGCTTC
T ss_pred cCch--hhccCCCCCEEECcCCcchhhh-HHH----------------hcCCCCCCEEECCCCCchhh-cchhhhcCCCC
Confidence 8764 5889999999999999987764 544 67889999999999987764 34678899999
Q ss_pred cEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 351 MDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 351 ~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|+|++|++.. .+|.. ++++++|+.++++.
T Consensus 280 ~~L~L~~n~~~~----~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 280 EKLDLRGCVNLS----RLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCC----CCCGG--GGGSCTTCEEECCG
T ss_pred CEEeCCCCCchh----hccHH--HhhccCceEEeCCH
Confidence 999999999884 67887 89999999998753
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.8e-27 Score=217.03 Aligned_cols=230 Identities=18% Similarity=0.180 Sum_probs=188.1
Q ss_pred HHHHHHhccccccEeecCC-cccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-
Q 016362 123 KIQDKFSKFEELTSAALPY-LGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 123 ~i~~~~~~l~~L~~L~l~~-~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~- 199 (390)
.+|..+.++++|+.|++++ |.+.+..+ .+.. +++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 4677889999999999995 88876655 5554 6999999999999985 567788999999999999999986655
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCC-cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLP-ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 278 (390)
.+..+++|++|++++|.+++. ++..+..++ +|++|++++|.+++..+. .+..++ |+.|++++|.+++..+ ..+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~~~~-~~~ 217 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEGDAS-VLF 217 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEECCG-GGC
T ss_pred HHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccCcCC-HHH
Confidence 688999999999999998752 344446777 899999999999876554 566666 9999999999987655 678
Q ss_pred CCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
..+++|+.|++++|.++... +. +..+++|++|+|++|+|++. .+..+..+++|++|++++|
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~-~~-----------------~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDL-GK-----------------VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CTTSCCSEEECCSSEECCBG-GG-----------------CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCceeeec-Cc-----------------ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCC
Confidence 89999999999999998653 22 45679999999999999853 3367889999999999999
Q ss_pred CCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 359 PVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 359 ~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++++ .+|. .+.+++|+.|+++.
T Consensus 279 ~l~~----~ip~---~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 279 NLCG----EIPQ---GGNLQRFDVSAYAN 300 (313)
T ss_dssp EEEE----ECCC---STTGGGSCGGGTCS
T ss_pred cccc----cCCC---CccccccChHHhcC
Confidence 9983 4565 36788888887764
No 3
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1e-25 Score=207.39 Aligned_cols=209 Identities=25% Similarity=0.276 Sum_probs=111.5
Q ss_pred HhccccccEeecCCcccCCCC---cchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCC
Q 016362 128 FSKFEELTSAALPYLGVSSPG---ANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLP 202 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~ 202 (390)
+.++++|+.|++++|.+...+ ..+.. +++|++|++++|.+.. +|..+..+++|++|++++|++....+ .+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhh
Confidence 345555555555555554332 12222 3555555555555542 23334455555555555555544432 344
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc-cCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+++ ..+. .+..+++|+.|+|++|.+++..+ ..+..+
T Consensus 124 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 198 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP-TAFNSL 198 (306)
T ss_dssp TCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTTC
T ss_pred hccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcCH-HHhcCC
Confidence 55555555555555442 122223445555555555555544 1111 34555555566666555555433 344555
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC-CCcEEEccCCCC
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP-KLMDIRLSENPV 360 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~-~L~~L~l~~n~l 360 (390)
++|++|++++|.++++. .. .+..+++|++|+|++|++++.. +..+..++ +|++|++++|++
T Consensus 199 ~~L~~L~L~~N~l~~~~--~~---------------~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLD--TF---------------PYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCSBCC--SG---------------GGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCEEECCCCccCccC--hh---------------hccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCCe
Confidence 55566666555555542 11 1445677777777777777653 34566664 777777777777
Q ss_pred CCC
Q 016362 361 SDP 363 (390)
Q Consensus 361 ~~~ 363 (390)
..+
T Consensus 261 ~~~ 263 (306)
T 2z66_A 261 ACT 263 (306)
T ss_dssp ECS
T ss_pred ecc
Confidence 653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.1e-25 Score=228.96 Aligned_cols=242 Identities=22% Similarity=0.216 Sum_probs=152.4
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccE
Q 016362 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRI 209 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~ 209 (390)
++.|+.|++++|.+.+..+.....+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+.+..+ .+..+++|++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC--cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 5566777777776665444323334677777777776665 445566666777777777776665544 4566667777
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016362 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|++++|.+++ .++..+..+++|++|++++|.+++..+. +++.+++|+.|+|++|.+++..+ ..+..+++|+.|++
T Consensus 471 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 471 LILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDL 545 (768)
T ss_dssp EECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEEC
T ss_pred EEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEEC
Confidence 7777766654 2333446666777777777766655433 56666667777777776664443 45566666777777
Q ss_pred CCCccccccCCCC-------------------------------------------------------------------
Q 016362 290 NKNNLNRIYYPNN------------------------------------------------------------------- 302 (390)
Q Consensus 290 ~~n~l~~~~~~~~------------------------------------------------------------------- 302 (390)
++|.+++.. |..
T Consensus 546 s~N~l~g~i-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 546 NTNLFNGTI-PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CSSEEESBC-CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCccCCcC-ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 766665321 110
Q ss_pred ------CchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhh
Q 016362 303 ------DTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRF 371 (390)
Q Consensus 303 ------~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 371 (390)
...++.+++++|.+.+ +..+++|++|+|++|++++. .+..+..+++|+.|+|++|.++ +.+|..
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~----g~ip~~ 699 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLD----GRIPQA 699 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCE----ECCCGG
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCccc----CcCChH
Confidence 0122334555555443 44577888888888888754 3467777888888888888887 456766
Q ss_pred hhhhhcCCceEecCcc
Q 016362 372 AIIARLGKIKILNGSE 387 (390)
Q Consensus 372 ~~i~~l~~L~~Ln~s~ 387 (390)
++.++.|++||+|.
T Consensus 700 --l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 700 --MSALTMLTEIDLSN 713 (768)
T ss_dssp --GGGCCCCSEEECCS
T ss_pred --HhCCCCCCEEECcC
Confidence 77888888888774
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=210.46 Aligned_cols=232 Identities=21% Similarity=0.209 Sum_probs=117.0
Q ss_pred HHHHhccccccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHH-HhcCCCCCEEEccCCCCCCccC-C
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAF-GEQLPALAVLNLSNNLMSKEVT-G 200 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~-~ 200 (390)
|..+.++++|++|++++|.+.+..+ .....+++|++|++++|.+... .|.. +..+++|++|++++|++.+..+ .
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI--QPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC--CCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc--CcccccCCCCcccEEeCCCCcccccChhh
Confidence 3345555666666666665554221 1122245666666666665541 1222 4556666666666665554433 1
Q ss_pred CC----------------------------------CCCCccEEEeecccCCHHHHHHHHhc------------------
Q 016362 201 LP----------------------------------QLKSIRILVLNCTGVNWMQVEILKHS------------------ 228 (390)
Q Consensus 201 ~~----------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~------------------ 228 (390)
+. .+++|++|++++|.+.......+...
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 21 22456666666666654333332221
Q ss_pred --------------------CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 229 --------------------LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 229 --------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
.++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.++ ..+..+++|++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 329 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS---VFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLN 329 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT---TTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchh---hcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEE
Confidence 13455555555555544332 45555566666666666655443 3455556666666
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcch
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGI 368 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 368 (390)
|++|.++++. +.. +..+++|++|+|++|++++.. +..+..+++|++|++++|.+++ +
T Consensus 330 Ls~N~l~~~~-~~~----------------~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-----~ 386 (455)
T 3v47_A 330 LSQNFLGSID-SRM----------------FENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLKS-----V 386 (455)
T ss_dssp CCSSCCCEEC-GGG----------------GTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC-----C
T ss_pred CCCCccCCcC-hhH----------------hcCcccCCEEECCCCcccccC-hhhccccccccEEECCCCcccc-----C
Confidence 6666665542 111 334556666666666665542 2445555666666666665553 2
Q ss_pred hhhhhhhhcCCceEecCc
Q 016362 369 SRFAIIARLGKIKILNGS 386 (390)
Q Consensus 369 ~~~~~i~~l~~L~~Ln~s 386 (390)
+.. .++.+++|+.|+++
T Consensus 387 ~~~-~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 387 PDG-IFDRLTSLQKIWLH 403 (455)
T ss_dssp CTT-TTTTCTTCCEEECC
T ss_pred CHh-HhccCCcccEEEcc
Confidence 211 13455556655554
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-24 Score=206.21 Aligned_cols=255 Identities=17% Similarity=0.188 Sum_probs=159.8
Q ss_pred EEEEeChhHHHH-HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC
Q 016362 115 SIELVGKDKIQD-KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 115 ~i~~~g~~~i~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~ 193 (390)
.+....+..+|. .+..+++|+.|++++|.+...++.....+++|++|++++|.+.. ..|..+..+++|++|++++|+
T Consensus 51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc--CCHHHhcCCCCCCEEECCCCc
Confidence 333334455554 46889999999999999998877444456999999999999987 335668899999999999999
Q ss_pred CCCccCC-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCcc-------------CC----
Q 016362 194 MSKEVTG-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIV-------------QG---- 255 (390)
Q Consensus 194 l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------~~---- 255 (390)
+...++. +..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.........+ ..
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcc
Confidence 9977665 6889999999999999875 233445788999999999999987532100000 00
Q ss_pred -----------------CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCC--CCchhhhhhcccccc
Q 016362 256 -----------------FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPN--NDTIHELVSAHESHE 316 (390)
Q Consensus 256 -----------------l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~l~~~~~~~~~~ 316 (390)
.++|+.|++++|.+++.+ .+..+++|++|++++|.++++.... ....++.+++++|.+
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCcccH---HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 123444445555444432 3455666666666666666553111 122334444444443
Q ss_pred cCC----CCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 317 ESY----LPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 317 ~~~----~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
.++ ..+++|++|+|++|+++.++ ..+..+++|++|++++|++.. ++ +..+++|+.|+++
T Consensus 285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~-----~~----~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 285 VALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVT-----LK----LSTHHTLKNLTLS 347 (390)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCC-----CC----CCTTCCCSEEECC
T ss_pred cccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccce-----eC----chhhccCCEEEcC
Confidence 332 23455555555555555443 234445555555555555543 11 3345555555554
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=8.4e-25 Score=208.17 Aligned_cols=226 Identities=19% Similarity=0.203 Sum_probs=175.0
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+..+++|++|++++|.+...++.....+++|++|++++|.+..+. +..+..+++|++|++++|++....+ .+..+
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 36789999999999999999988865555699999999999998532 2346889999999999999988766 58899
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc-------------------cCCC----------------C
Q 016362 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-------------------ITPV----------------S 249 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~~~----------------~ 249 (390)
++|++|++++|.++... +..+++|++|++++|.++. .+.. .
T Consensus 165 ~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp TTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 99999999999987432 1334444443333333222 1100 0
Q ss_pred CCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCC-CCchhhhhhcccccccCCC----CCCC
Q 016362 250 SPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPN-NDTIHELVSAHESHEESYL----PFQN 324 (390)
Q Consensus 250 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~~~~~~~~~~~~~----~l~~ 324 (390)
...+..+++|+.|+|++|.+++..+ ..+..+++|++|++++|+++++.... ....++.+++++|.+..+. .+++
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred cHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 1246778999999999999998765 67889999999999999999873211 2356778888888776543 4799
Q ss_pred CCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 325 LCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 325 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|++|++++|+|++++ +..+++|+.|++++|++..
T Consensus 320 L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCccceeC----chhhccCCEEEcCCCCccc
Confidence 999999999999874 6789999999999999985
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=210.93 Aligned_cols=248 Identities=17% Similarity=0.160 Sum_probs=163.2
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~ 203 (390)
+..+.++++|++|++++|.+....+..+..+++|++|+|++|.+..+. +..+..+++|++|++++|++....+ .+..
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--TTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC--cccccCCCCCCEEECCCCccccCChhHccc
Confidence 346788899999999999888876644444689999999999888532 2346788999999999998887766 5788
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
+++|++|++++|.+... .+..+..+++|++|++++|.+++++.. .+..+++|+.|+|++|.+...++ ..+..+++
T Consensus 127 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~ 201 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNINAIRD-YSFKRLYR 201 (477)
T ss_dssp CTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCCEECT-TCSCSCTT
T ss_pred cccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCcEeCh-hhcccCcc
Confidence 89999999999888642 233346788899999999988876543 57788899999999998887664 45666777
Q ss_pred cCeEecCCCccccccCCC--------------------------CCchhhhhhcccccccC-----CCCCCCCCEEeCCC
Q 016362 284 LEQLYLNKNNLNRIYYPN--------------------------NDTIHELVSAHESHEES-----YLPFQNLCCLLLGN 332 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~--------------------------~~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~ 332 (390)
|+.|++++|.+.+...+. ....++.+++++|.+.. +..+++|++|+|++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 777666665433221111 11223334444443322 23345555555555
Q ss_pred CCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 333 NMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 333 N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
|+++++. +..+..+++|+.|+|++|.++. ++.. .+..+++|+.|+++
T Consensus 282 n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-----~~~~-~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 282 GQLAVVE-PYAFRGLNYLRVLNVSGNQLTT-----LEES-VFHSVGNLETLILD 328 (477)
T ss_dssp SCCSEEC-TTTBTTCTTCCEEECCSSCCSC-----CCGG-GBSCGGGCCEEECC
T ss_pred CccceEC-HHHhcCcccCCEEECCCCcCce-----eCHh-HcCCCcccCEEEcc
Confidence 5555542 2445556666666666666553 2221 24556666666654
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.4e-24 Score=196.17 Aligned_cols=218 Identities=24% Similarity=0.217 Sum_probs=181.0
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC-CCCcc
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEV 198 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~-l~~~~ 198 (390)
+...+|.. -.++|+.|++++|.+...++.....+++|++|++++|.+..+ .+..+..+++|++|++++|. +....
T Consensus 22 ~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 22 GLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee--CHhhcCCccCCCEEeCCCCCCccccC
Confidence 34445432 346899999999999988875445569999999999999862 35678899999999999997 77664
Q ss_pred C-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016362 199 T-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 199 ~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
+ .+..+++|++|++++|.++. ..+..+..+++|++|++++|.++..++. .+..+++|+.|+|++|.+++.+. ..
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~ 172 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE-RA 172 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT-TT
T ss_pred HHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCH-HH
Confidence 5 68899999999999999875 2344457899999999999999987654 57889999999999999998775 56
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016362 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|++++|.++++. |.. +..+++|++|++++|++++.+ .+.+..+++|++|++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~~~----------------~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVH-PHA----------------FRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLND 234 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCS
T ss_pred hcCccccCEEECCCCcccccC-HhH----------------ccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccC
Confidence 888999999999999999875 333 677899999999999999875 36788999999999999
Q ss_pred CCCCCCC
Q 016362 358 NPVSDPG 364 (390)
Q Consensus 358 n~l~~~~ 364 (390)
|++..++
T Consensus 235 N~~~c~~ 241 (285)
T 1ozn_A 235 NPWVCDC 241 (285)
T ss_dssp SCEECSG
T ss_pred CCccCCC
Confidence 9998644
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.2e-25 Score=205.85 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=184.9
Q ss_pred ccccEeecCCcccCC---CCcchhhhcCcccEEECCC-CcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCC
Q 016362 132 EELTSAALPYLGVSS---PGANIGTIVTNLKELDLTG-NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKS 206 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~ 206 (390)
.+++.|+++++.+.+ .+..+.. +++|++|++++ |.+.+ .+|..+..+++|++|++++|.+++..+ .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 478899999999986 3445555 59999999995 88876 667889999999999999999986665 6889999
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC-CccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD-NLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
|++|++++|.+++ .++..+..+++|++|++++|.+++..+. .+..++ .|+.|++++|.+++..+ ..+..++ |+
T Consensus 127 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CS
T ss_pred CCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-cc
Confidence 9999999998875 3445558899999999999999866543 677787 99999999999986544 4566666 99
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016362 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
+|++++|.+++.. |.. +..+++|++|+|++|.+++.. ..+..+++|++|++++|.+.+
T Consensus 201 ~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~~--- 258 (313)
T 1ogq_A 201 FVDLSRNMLEGDA-SVL----------------FGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYG--- 258 (313)
T ss_dssp EEECCSSEEEECC-GGG----------------CCTTSCCSEEECCSSEECCBG--GGCCCCTTCCEEECCSSCCEE---
T ss_pred EEECcCCcccCcC-CHH----------------HhcCCCCCEEECCCCceeeec--CcccccCCCCEEECcCCcccC---
Confidence 9999999998763 333 678899999999999999754 347889999999999999983
Q ss_pred cchhhhhhhhhcCCceEecCcc
Q 016362 366 GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 366 ~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+|.. ++.+++|+.|+++.
T Consensus 259 -~~p~~--l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 259 -TLPQG--LTQLKFLHSLNVSF 277 (313)
T ss_dssp -CCCGG--GGGCTTCCEEECCS
T ss_pred -cCChH--HhcCcCCCEEECcC
Confidence 46776 88999999999874
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=208.29 Aligned_cols=232 Identities=18% Similarity=0.130 Sum_probs=184.7
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~ 203 (390)
|..+.++++|+.|++++|.+...++..+..+++|++|+|++|.+.. ..+..+..+++|++|++++|.+....+ .+..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCccceeChhhccC
Confidence 4567899999999999999998887655557999999999999986 335678899999999999999987766 6889
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC------------------------Cc
Q 016362 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD------------------------NL 259 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~------------------------~L 259 (390)
+++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+. .+..++ +|
T Consensus 151 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp CTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCcccccCccc
Confidence 9999999999999875 3445568899999999999988876543 233333 56
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCC--CCCchhhhhhcccccccC-----CCCCCCCCEEeCCC
Q 016362 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYP--NNDTIHELVSAHESHEES-----YLPFQNLCCLLLGN 332 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~ 332 (390)
+.|+|++|.++..+. ..+..+++|+.|+|++|.++.+... .....++.+++++|.+.+ +..+++|++|+|++
T Consensus 227 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 227 TSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp SEEEEESSCCCSCCH-HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred cEEECcCCcccccCH-HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 666666777776664 5678899999999999999887421 123456677788776554 45789999999999
Q ss_pred CCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 333 NMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 333 N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|+|++++ ...+..+++|++|++++|++..++
T Consensus 306 N~l~~~~-~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 306 NQLTTLE-ESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SCCSCCC-GGGBSCGGGCCEEECCSSCEECSG
T ss_pred CcCceeC-HhHcCCCcccCEEEccCCCccCcc
Confidence 9999975 357889999999999999998644
No 12
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=200.13 Aligned_cols=239 Identities=17% Similarity=0.103 Sum_probs=171.5
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~ 205 (390)
..+..+++|++|++++|.+...++.....+++|++|++++|.+.+.. . +..+++|++|++++|++++.. ..+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCcccccc----CCC
Confidence 44566778999999999999887744455699999999999988532 2 788999999999999887543 347
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016362 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
+|++|++++|.++... ...+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++..+......+++|+
T Consensus 100 ~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 8888888888876421 13467888888888888877553 5667788888888888888765422234678888
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+|+|++|.++++........++.+++++|.+.+ +..+++|++|+|++|+|+.++ ..+..+++|+.|++++|++.
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCB
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCcc
Confidence 888888888877433334445556666665443 345677888888888777654 45677778888888888776
Q ss_pred CCCCcchhhhhhhhhcCCceEecCc
Q 016362 362 DPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 362 ~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
. +.++.. ++++++|+.|+++
T Consensus 251 ~---~~~~~~--~~~~~~L~~l~l~ 270 (317)
T 3o53_A 251 C---GTLRDF--FSKNQRVQTVAKQ 270 (317)
T ss_dssp H---HHHHHH--HHTCHHHHHHHHH
T ss_pred C---cCHHHH--HhccccceEEECC
Confidence 3 235554 6677777766654
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5.1e-24 Score=206.04 Aligned_cols=212 Identities=21% Similarity=0.207 Sum_probs=142.3
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.++++|+.|++++|.+..+++..+..+++|++|+|++|.++.+. +..+..+++|++|++++|++....+ .+..+
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 34567777777777777777666544444577777777777776421 2346667777777777777765554 46677
Q ss_pred CCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 205 KSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|. +.. .....+..+++|++|++++|.++.++ .+..+++|+.|+|++|.+++..+ ..+..+++
T Consensus 160 ~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 232 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREIP-----NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMH 232 (440)
T ss_dssp TTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCSSCC-----CCTTCSSCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred cccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCcccc-----ccCCCcccCEEECCCCccCccCh-hhhccCcc
Confidence 777777777643 321 22223456777777777777776553 25666777777777777776654 55667777
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016362 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|+++.+. +.. +..+++|++|+|++|+|+.++ .+.+..+++|+.|+|++||+.-+
T Consensus 233 L~~L~L~~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIE-RNA----------------FDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECTTCCCCEEC-TTS----------------STTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCceeEEC-hhh----------------hcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEcCCCCccCC
Confidence 777777777777763 222 566788888888888888764 35667788888888888888755
Q ss_pred C
Q 016362 364 G 364 (390)
Q Consensus 364 ~ 364 (390)
+
T Consensus 295 C 295 (440)
T 3zyj_A 295 C 295 (440)
T ss_dssp S
T ss_pred C
Confidence 5
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-23 Score=195.94 Aligned_cols=239 Identities=22% Similarity=0.292 Sum_probs=133.3
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|++|++++|.+...+ .+. .+++|++|++++|.+..+. . +..+++|++|++++|......+.+..+++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~-~l~~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQ-NLTNLRELYLNEDNISDIS---P-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGT-TCTTCSEEECTTSCCCCCG---G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred hhcCCcCCEEEccCCcccCch-HHc-CCCcCCEEECcCCcccCch---h-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 455555555555555555432 222 2355555555555555422 1 445555555555555433333345555566
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC-----------------CCCccCCCCCccEEEcCCCCCC
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV-----------------SSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------~~~~l~~l~~L~~L~L~~n~l~ 270 (390)
++|++++|.+... +. +..+++|++|++++|.+++.... ....+..+++|+.|++++|.++
T Consensus 158 ~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 158 NYLTVTESKVKDV--TP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CEEECCSSCCCCC--GG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cEEEecCCCcCCc--hh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence 6666666555421 11 35566666666666665543310 0001345566666666666666
Q ss_pred CchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC---CCCCCCCCEEeCCCCCCCCchhhhhccCC
Q 016362 271 EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNLCCLLLGNNMIEDLASIDSLDSF 347 (390)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l 347 (390)
+.++ +..+++|++|++++|.++++..-.....++.+++++|.+.. +..+++|++|++++|.+++.. ++.+..+
T Consensus 235 ~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l 310 (347)
T 4fmz_A 235 DLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-MEVIGGL 310 (347)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGG-HHHHHTC
T ss_pred CCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcC-hhHhhcc
Confidence 6543 55667777777777776665323333445556666665444 344667777777777776642 3556677
Q ss_pred CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 348 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 348 ~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|++|++++|++++ ++. ++.+++|+.|+++.
T Consensus 311 ~~L~~L~L~~n~l~~-----~~~---~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 311 TNLTTLFLSQNHITD-----IRP---LASLSKMDSADFAN 342 (347)
T ss_dssp TTCSEEECCSSSCCC-----CGG---GGGCTTCSEESSSC
T ss_pred ccCCEEEccCCcccc-----ccC---hhhhhccceeehhh
Confidence 777777777777764 222 56677777777664
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=8.9e-24 Score=192.38 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=183.5
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEee
Q 016362 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (390)
Q Consensus 135 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~ 213 (390)
+.++++++.+..++..+ .++|++|++++|.+..+ .+..+..+++|++|++++|.+....+ .+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCcc--CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 57888999988876544 37999999999999863 23567899999999999999988755 68899999999999
Q ss_pred ccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016362 214 CTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 214 ~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
+|. +.. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++..+. ..+..+++|++|++++|
T Consensus 89 ~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 89 DNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp SCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC
Confidence 997 663 2244457899999999999999987654 67889999999999999998775 56889999999999999
Q ss_pred ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhh
Q 016362 293 NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFA 372 (390)
Q Consensus 293 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 372 (390)
+++++. +.. +..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+ ..+..
T Consensus 164 ~l~~~~-~~~----------------~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~~~- 220 (285)
T 1ozn_A 164 RISSVP-ERA----------------FRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA----LPTEA- 220 (285)
T ss_dssp CCCEEC-TTT----------------TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC----CCHHH-
T ss_pred cccccC-HHH----------------hcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCc----CCHHH-
Confidence 999873 222 567899999999999999873 4688899999999999999985 22333
Q ss_pred hhhhcCCceEecCcc
Q 016362 373 IIARLGKIKILNGSE 387 (390)
Q Consensus 373 ~i~~l~~L~~Ln~s~ 387 (390)
++.+++|+.|+++.
T Consensus 221 -~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 221 -LAPLRALQYLRLND 234 (285)
T ss_dssp -HTTCTTCCEEECCS
T ss_pred -cccCcccCEEeccC
Confidence 78899999999875
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2e-24 Score=211.33 Aligned_cols=253 Identities=18% Similarity=0.151 Sum_probs=176.2
Q ss_pred CCcceEEEEeChhHHHHHHhccc----cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCC
Q 016362 110 SNKHVSIELVGKDKIQDKFSKFE----ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALA 185 (390)
Q Consensus 110 ~~~~~~i~~~g~~~i~~~~~~l~----~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~ 185 (390)
++....+..+....+|..+..+. +|+.|++++|.+...++.....+++|++|+|++|.+++.. | +..+++|+
T Consensus 8 ng~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~--l~~l~~L~ 83 (487)
T 3oja_A 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D--LESLSTLR 83 (487)
T ss_dssp ETTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E--CTTCTTCC
T ss_pred CCceeecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c--cccCCCCC
Confidence 34444455555566777776655 8999999999999988744455699999999999998632 2 78899999
Q ss_pred EEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcC
Q 016362 186 VLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE 265 (390)
Q Consensus 186 ~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~ 265 (390)
+|++++|.+++.+ ..++|++|++++|.++.... ..+++|++|++++|.+++..+. .+..+++|+.|+|+
T Consensus 84 ~L~Ls~N~l~~l~----~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 84 TLDLNNNYVQELL----VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLK 152 (487)
T ss_dssp EEECCSSEEEEEE----ECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECT
T ss_pred EEEecCCcCCCCC----CCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECC
Confidence 9999999887543 33788999999988874221 3568889999999988887554 56778889999999
Q ss_pred CCCCCCchhhhhcC-CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCC----CCCCCCCEEeCCCCCCCCchh
Q 016362 266 DNCIAEWSEILKLC-QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESY----LPFQNLCCLLLGNNMIEDLAS 340 (390)
Q Consensus 266 ~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~----~~l~~L~~L~Ls~N~i~~~~~ 340 (390)
+|.+++..+ ..+. .+++|+.|+|++|.|+++........++.+++++|.+.++ ..+++|+.|+|++|.|++++
T Consensus 153 ~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp- 230 (487)
T 3oja_A 153 LNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE- 230 (487)
T ss_dssp TSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC-
T ss_pred CCCCCCcCh-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc-
Confidence 998887655 3443 6888999999999888874322334445555555554332 34566777777777666654
Q ss_pred hhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 341 IDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 341 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
..+..+++|+.|++++|++.. +.+|.. +..++.|+.|+.
T Consensus 231 -~~l~~l~~L~~L~l~~N~l~c---~~~~~~--~~~l~~L~~l~~ 269 (487)
T 3oja_A 231 -KALRFSQNLEHFDLRGNGFHC---GTLRDF--FSKNQRVQTVAK 269 (487)
T ss_dssp -TTCCCCTTCCEEECTTCCBCH---HHHHHH--HTTCHHHHHHHH
T ss_pred -hhhccCCCCCEEEcCCCCCcC---cchHHH--HHhCCCCcEEec
Confidence 345666667777777776652 234444 555555555544
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.1e-24 Score=209.52 Aligned_cols=249 Identities=17% Similarity=0.127 Sum_probs=141.2
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHH--HhcCCCCCEEEccCCCCCCccCC--CC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAF--GEQLPALAVLNLSNNLMSKEVTG--LP 202 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--l~~l~~L~~L~ls~n~l~~~~~~--~~ 202 (390)
.+..+++|++|++++|.+....+.....+++|++|++++|.+.+ .++.. +..+++|++|++++|++.+..+. +.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG--AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT--HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc--cccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 45566666666666666665544333334666666666666664 33333 56666666666666666655442 55
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcC--CcccEEeccCCCccccCCCCC-----CccCCCCCccEEEcCCCCCCCchhh
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSL--PALEELHLMGNSISEITPVSS-----PIVQGFDNLQLLNLEDNCIAEWSEI 275 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~-----~~l~~l~~L~~L~L~~n~l~~~~~~ 275 (390)
.+++|++|++++|.+... .+..+..+ .+|+.|++++|.+.+...... ..+..+++|+.|++++|.+++..+.
T Consensus 152 ~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GCTTCCEEECTTCCBSCC-CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCcccEEeCCCCccccc-ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 666666666666665431 11111111 233333333333333221100 0011234555566665555432110
Q ss_pred hhc-------------------------------------C--CCCCcCeEecCCCccccccCCCC---Cchhhhhhccc
Q 016362 276 LKL-------------------------------------C--QIRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHE 313 (390)
Q Consensus 276 ~~l-------------------------------------~--~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~ 313 (390)
.+ . ..++|+.|++++|.++++. |.. ...++.+++++
T Consensus 231 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 231 -RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp -HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTT
T ss_pred -hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc-hhhcccCCCCCEEECCC
Confidence 00 0 1135555555555555542 221 12334445555
Q ss_pred ccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 314 SHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 314 ~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.+.+ +..+++|++|+|++|.+++.+ +..+..+++|++|++++|.+.. ..+.. ++.+++|++|+++.
T Consensus 309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~----~~~~~--~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRA----LGDQS--FLGLPNLKELALDT 380 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCE----ECTTT--TTTCTTCCEEECCS
T ss_pred CcccccChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccc----cChhh--ccccccccEEECCC
Confidence 44332 557899999999999998863 3678899999999999999974 33554 78899999999875
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.7e-24 Score=206.98 Aligned_cols=212 Identities=21% Similarity=0.199 Sum_probs=131.4
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.++++|+.|++++|.+...++..+..+++|++|+|++|.++.+ .+..+..+++|++|++++|++....+ .+..+
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 3456666666666666666665553333346666666666666642 12335566666666666666665444 45666
Q ss_pred CCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 205 KSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|+.|++++| .+.. .....+..+++|++|++++|.+++.+ .+..+++|+.|+|++|.+++..+ ..+..+++
T Consensus 171 ~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 243 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDMP-----NLTPLVGLEELEMSGNHFPEIRP-GSFHGLSS 243 (452)
T ss_dssp TTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSCCSSCC-----CCTTCTTCCEEECTTSCCSEECG-GGGTTCTT
T ss_pred CcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCcccccc-----cccccccccEEECcCCcCcccCc-ccccCccC
Confidence 66666666663 3321 11223355666777777777666542 24556667777777777666554 45666667
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016362 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|+++.+. +.. +..+++|++|+|++|+|++.+ .+.+..+++|+.|+|++||+.-+
T Consensus 244 L~~L~L~~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIE-RNA----------------FDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECTTSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCEECS
T ss_pred CCEEEeCCCcCceEC-HHH----------------hcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCcCCC
Confidence 777777777766653 222 556778888888888887764 24566777888888888887655
Q ss_pred C
Q 016362 364 G 364 (390)
Q Consensus 364 ~ 364 (390)
+
T Consensus 306 C 306 (452)
T 3zyi_A 306 C 306 (452)
T ss_dssp T
T ss_pred C
Confidence 4
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.8e-24 Score=213.44 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=101.8
Q ss_pred hHHH-HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016362 122 DKIQ-DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 122 ~~i~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
..+| ..+..+++|+.|++++|.+...++..+..+++|++|+|++|.+.. ..|..+..+++|++|++++|.++..++.
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 3444 457889999999999999998887444456999999999999987 3346678999999999999999977775
Q ss_pred -CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccC
Q 016362 201 -LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEIT 246 (390)
Q Consensus 201 -~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 246 (390)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.+++..
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred HhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC
Confidence 6899999999999999885 34444588999999999999998764
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.7e-23 Score=194.58 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=135.7
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+.++++|++|++++|.+....+.....+++|++|++++|.++. +|..+ .++|++|++++|.+....+ .+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB---CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc---cChhh--cccccEEECCCCcccccCHhHhcCCc
Confidence 35556666666666666665544222234666666666666553 22211 2556666666666654443 355566
Q ss_pred CccEEEeecccCCHH-HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 206 SIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+|++|++++|.+... ..+..+..+++|++|++++|.++.++.. + .++|+.|++++|.+++..+ ..+..+++|
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 218 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELHLDGNKITKVDA-ASLKGLNNL 218 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEECTTSCCCEECT-GGGTTCTTC
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc----c--cccCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 666666666655421 1122335566666666666666654332 1 1566666666666665543 455666666
Q ss_pred CeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
++|++++|.++++. +.. +..+++|++|+|++|+++.++ ..+..+++|++|++++|+|+...
T Consensus 219 ~~L~Ls~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 219 AKLGLSFNSISAVD-NGS----------------LANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CEEECCSSCCCEEC-TTT----------------GGGSTTCCEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCceeC-hhh----------------ccCCCCCCEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccC
Confidence 77777766666653 212 566789999999999999765 56888999999999999998643
Q ss_pred CcchhhhhhhhhcCCceEecCcc
Q 016362 365 RGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 365 ~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.............+.|+.|+++.
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCS
T ss_pred hhhcCCcccccccccccceEeec
Confidence 32221111122356777777653
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.8e-24 Score=212.90 Aligned_cols=241 Identities=18% Similarity=0.166 Sum_probs=165.1
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+..+++|+.|++++|.+...++..+..+++|++|+|++|.+..+. +..+..+++|++|++++|.+.+.++ .+..+
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 46789999999999999999998866556799999999999998632 2446899999999999999998877 58899
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC-C------------ccCCCCCccEEEcCCCCCCC
Q 016362 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS-P------------IVQGFDNLQLLNLEDNCIAE 271 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~------------~l~~l~~L~~L~L~~n~l~~ 271 (390)
++|++|++++|.++... +..+++|+.|++++|.+++...... . .....++|+.|+|++|.+++
T Consensus 171 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 246 (597)
T ss_dssp TTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred CcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC
Confidence 99999999999987532 2556677666666666554321100 0 00012456777777777766
Q ss_pred chhhhhcCCCCCcCeEecCCCccccccCCCC---CchhhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhc
Q 016362 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 272 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~l 344 (390)
. ..+..+++|+.|+|++|.++++. |.. ...++.|++++|.+.+ ...+++|++|+|++|.++.++ ..+
T Consensus 247 ~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~ 320 (597)
T 3oja_B 247 T---AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQ 320 (597)
T ss_dssp C---GGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGH
T ss_pred C---hhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccC--ccc
Confidence 4 24566777777777777777663 222 2233444555554433 234677777777777777654 345
Q ss_pred cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 345 DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
..+++|+.|+|++|++.. ++ ++.+++|+.|+++.
T Consensus 321 ~~l~~L~~L~L~~N~l~~-----~~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVT-----LK----LSTHHTLKNLTLSH 354 (597)
T ss_dssp HHHTTCSEEECCSSCCCC-----CC----CCTTCCCSEEECCS
T ss_pred ccCCCCCEEECCCCCCCC-----cC----hhhcCCCCEEEeeC
Confidence 667777777777777764 22 44566777777653
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.8e-23 Score=210.22 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=137.4
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~l 204 (390)
.+..+++|+.|++++|.+...+..+.. +++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+ .+..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFEN--LCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCSB--GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcCc--CchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 467788888888888888877666655 4888888888888876 334567778888888888887764443 36677
Q ss_pred CCccEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 205 KSIRILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|.+.... .+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+...+..+++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 78888888877776321 022345667777777777777665443 45555666666666666554432123455555
Q ss_pred cCeEecCCCccccccCCCC---CchhhhhhcccccccC--------CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcE
Q 016362 284 LEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEES--------YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMD 352 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~~~~~~--------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~ 352 (390)
|++|++++|.++... +.. ...++.+++++|.+.+ +..+++|++|++++|++++.+ +..+..+++|++
T Consensus 427 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 504 (606)
T 3t6q_A 427 LKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNH 504 (606)
T ss_dssp CCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred CCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCE
Confidence 666666665555432 111 2233444444444322 334555555555555555442 234455555555
Q ss_pred EEccCCCCC
Q 016362 353 IRLSENPVS 361 (390)
Q Consensus 353 L~l~~n~l~ 361 (390)
|++++|.+.
T Consensus 505 L~Ls~N~l~ 513 (606)
T 3t6q_A 505 VDLSHNRLT 513 (606)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccC
Confidence 555555554
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.5e-24 Score=217.54 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=143.0
Q ss_pred hHHHHHHhccccccEeecCCcc-cCC--CCcchhhh-----cCcccEEECCCCcCCChHHHHH--HHhcCCCCCEEEccC
Q 016362 122 DKIQDKFSKFEELTSAALPYLG-VSS--PGANIGTI-----VTNLKELDLTGNLLSDWKDIGA--FGEQLPALAVLNLSN 191 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~-i~~--~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~--~l~~l~~L~~L~ls~ 191 (390)
..+|..+.++++|+.|++++|. +++ .+..+..+ +++|++|++++|.++ .+|. .+..+++|++|++++
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCS
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcC
Confidence 3456667777777777777776 654 22233332 367777777777766 3454 666777777777777
Q ss_pred CCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCc-ccEEeccCCCccccCCCC---------------------
Q 016362 192 NLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA-LEELHLMGNSISEITPVS--------------------- 249 (390)
Q Consensus 192 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~--------------------- 249 (390)
|++.+.++.+..+++|++|++++|.++ .++..+..+++ |++|++++|.++.++..+
T Consensus 340 N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 340 NQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 776644445555555555555555554 23333344455 555555555554332110
Q ss_pred -CCccC-------CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCC-Cc----------hhhhhh
Q 016362 250 -SPIVQ-------GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNN-DT----------IHELVS 310 (390)
Q Consensus 250 -~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~----------~l~~~~ 310 (390)
+..+. .+++|+.|+|++|.++..+. ..+..+++|++|+|++|.++.+ |.. .. .++.++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEI--PKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBC--CSSSSEETTEECTTGGGCCEEE
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCc--CHHHhccccccccccCCccEEE
Confidence 01222 44566666666666665543 3344566777777777777644 322 11 455566
Q ss_pred cccccccCCC------CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC------CCCCCCCCcchhhhhhhhhcC
Q 016362 311 AHESHEESYL------PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE------NPVSDPGRGGISRFAIIARLG 378 (390)
Q Consensus 311 ~~~~~~~~~~------~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~~~~~~~i~~l~ 378 (390)
+++|.+..+. .+++|++|+|++|++++++ ..+..+++|+.|++++ |.+. +.+|.. ++.++
T Consensus 495 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~----~~~p~~--l~~l~ 566 (636)
T 4eco_A 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTL----REWPEG--ITLCP 566 (636)
T ss_dssp CCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCC----CCCCTT--GGGCS
T ss_pred CcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC--hhhhcCCCCCEEECCCCcccccCccc----ccChHH--HhcCC
Confidence 6666554321 5667777777777777643 4556677777777744 3333 245555 66677
Q ss_pred CceEecCcc
Q 016362 379 KIKILNGSE 387 (390)
Q Consensus 379 ~L~~Ln~s~ 387 (390)
+|+.|+++.
T Consensus 567 ~L~~L~Ls~ 575 (636)
T 4eco_A 567 SLTQLQIGS 575 (636)
T ss_dssp SCCEEECCS
T ss_pred CCCEEECCC
Confidence 777777654
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.8e-23 Score=192.79 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=157.0
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|+.|++++|......+.+.. +++|++|++++|.+..... +..+++|++|++++|.+....+ +..+++|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTT-CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred hccCCceeEEECCCCCCcccccchhh-CCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc-ccCCCcc
Confidence 44555555555555533333333332 4667777777776665322 6677788888888877765443 6677888
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
+.|++++|.+.... . +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.+ .+..+++|++|
T Consensus 202 ~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L 270 (347)
T 4fmz_A 202 HYFTAYVNQITDIT--P-VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISDIN---AVKDLTKLKML 270 (347)
T ss_dssp CEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEE
T ss_pred ceeecccCCCCCCc--h-hhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCCCh---hHhcCCCcCEE
Confidence 88888888776422 2 4788999999999999887643 678899999999999999864 47889999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
++++|.++++..-.....++.+++++|.+.. +..+++|++|++++|++++.+. +..+++|++|++++|+|+
T Consensus 271 ~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred EccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 9999999987433334556778888887654 3468999999999999999753 788999999999999986
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5.5e-24 Score=219.58 Aligned_cols=250 Identities=21% Similarity=0.216 Sum_probs=205.8
Q ss_pred HHHHHHhccc-cccEeecCCcccCCCCc-chhh-hcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 123 KIQDKFSKFE-ELTSAALPYLGVSSPGA-NIGT-IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 123 ~i~~~~~~l~-~L~~L~l~~~~i~~~~~-~~~~-~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
.+|..+..++ .|+.|++++|.+.+..+ .+.. .+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..+
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEECcCCcccCccc
Confidence 4566677776 89999999999876544 3332 25899999999999986 567889999999999999999987766
Q ss_pred -CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc
Q 016362 200 -GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 200 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 278 (390)
.+..+++|+.|++++|.+.+ .++..+..+++|++|++++|.+++..+. .+..+++|+.|+|++|++++..+ ..+
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p-~~~ 510 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIP-KWI 510 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred HHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCH---HHhcCCCCCEEEccCCccCCcCC-hHH
Confidence 68899999999999999986 3455568899999999999999977654 78899999999999999997655 578
Q ss_pred CCCCCcCeEecCCCccccccCCCCCc---hhhhhhcccccccC-------------------------------------
Q 016362 279 CQIRSLEQLYLNKNNLNRIYYPNNDT---IHELVSAHESHEES------------------------------------- 318 (390)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~~---~l~~~~~~~~~~~~------------------------------------- 318 (390)
+.+++|++|+|++|++++.. |.... .++.+++++|.+.+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 89999999999999998654 44333 34556666664432
Q ss_pred --------------------------------------CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016362 319 --------------------------------------YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 319 --------------------------------------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
+..+++|+.|+|++|++++. .+..+..++.|+.|+|++|.+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCcc
Confidence 23467899999999999975 447899999999999999999
Q ss_pred CCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 361 SDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 361 ~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+ +.+|.. ++.+++|+.||+|.
T Consensus 669 ~----g~ip~~--l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 669 S----GSIPDE--VGDLRGLNILDLSS 689 (768)
T ss_dssp C----SCCCGG--GGGCTTCCEEECCS
T ss_pred C----CCCChH--HhCCCCCCEEECCC
Confidence 8 468887 99999999999985
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-23 Score=190.51 Aligned_cols=206 Identities=23% Similarity=0.207 Sum_probs=176.8
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+.+++++++++++++.+..++..+. ++++.|++++|.+..+ .+..+..+++|++|++++|.++...+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECCCCccCcccC-CCCCCcC
Confidence 4577889999999999998887653 7899999999999863 34678899999999999999986644 4789999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++|++++|.+. .++..+..+++|++|++++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|+.|
T Consensus 80 ~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEE
T ss_pred CEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEE
Confidence 99999999987 4555557889999999999999988755 68889999999999999998876 667889999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+|++|+|+.+ |... +..+++|++|+|++|+|+.++ ..+..+++|+.|+|++||+.-++
T Consensus 154 ~L~~N~l~~l--~~~~---------------~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 154 SLANNNLTEL--PAGL---------------LNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp ECTTSCCSCC--CTTT---------------TTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSG
T ss_pred ECCCCcCCcc--CHHH---------------hcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcC
Confidence 9999999987 4431 567899999999999999876 56777889999999999997654
No 27
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.1e-24 Score=196.11 Aligned_cols=209 Identities=20% Similarity=0.208 Sum_probs=169.5
Q ss_pred HhccccccEeecCCcccCCCCc-chh-hhcCcccEEECCCCcCCChHHHHHHHhcC-----CCCCEEEccCCCCCCccC-
Q 016362 128 FSKFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWKDIGAFGEQL-----PALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~-~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~l-----~~L~~L~ls~n~l~~~~~- 199 (390)
+.++++|++|++++|.+.+..+ .++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 3478999999999999986555 442 4569999999999999973 4555655 999999999999998875
Q ss_pred CCCCCCCccEEEeecccCCHHH-HHHHH--hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhh
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQ-VEILK--HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL 276 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 276 (390)
.+..+++|++|++++|.+.+.. .+..+ ..+++|++|++++|.+++........+..+++|+.|+|++|.+++..+..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 6889999999999999987531 23333 78899999999999998543211113457789999999999999866435
Q ss_pred hcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016362 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
.+..+++|++|+|++|.|+.+ |.. +. ++|++|+|++|+|++++ .+..+++|++|+++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~i--p~~----------------~~--~~L~~L~Ls~N~l~~~p---~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQV--PKG----------------LP--AKLSVLDLSYNRLDRNP---SPDELPQVGNLSLK 304 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSC--CSS----------------CC--SEEEEEECCSSCCCSCC---CTTTSCEEEEEECT
T ss_pred hhhhcCCCCEEECCCCccChh--hhh----------------cc--CCceEEECCCCCCCCCh---hHhhCCCCCEEecc
Confidence 566789999999999999966 554 22 89999999999999985 28889999999999
Q ss_pred CCCCCC
Q 016362 357 ENPVSD 362 (390)
Q Consensus 357 ~n~l~~ 362 (390)
+|++++
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 999985
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6e-24 Score=197.48 Aligned_cols=220 Identities=17% Similarity=0.156 Sum_probs=184.0
Q ss_pred eEEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC
Q 016362 114 VSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 114 ~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~ 193 (390)
+.+...++..+|..+.++++|++|++++|.+..++..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FAGLETLTLARNPLR---ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGG-GTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEET
T ss_pred EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhc-cCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCC
Confidence 3444445567888888999999999999999977666766 599999999999998 467789999999999999987
Q ss_pred CCCccC-CCC---------CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEE
Q 016362 194 MSKEVT-GLP---------QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLN 263 (390)
Q Consensus 194 l~~~~~-~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~ 263 (390)
+.+..+ .+. .+++|++|++++|.++ .++..+..+++|++|++++|.++++++ .+..+++|+.|+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~ 235 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELD 235 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEE
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEE
Confidence 766655 443 3999999999999998 455556899999999999999997654 578899999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhh
Q 016362 264 LEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDS 343 (390)
Q Consensus 264 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 343 (390)
|++|.+.+..+ ..++.+++|++|++++|.+.+.. |.. +..+++|++|+|++|++.+. .++.
T Consensus 236 Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~-p~~----------------~~~l~~L~~L~L~~n~~~~~-iP~~ 296 (328)
T 4fcg_A 236 LRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTL-PLD----------------IHRLTQLEKLDLRGCVNLSR-LPSL 296 (328)
T ss_dssp CTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBC-CTT----------------GGGCTTCCEEECTTCTTCCC-CCGG
T ss_pred CcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhc-chh----------------hhcCCCCCEEeCCCCCchhh-ccHH
Confidence 99999887655 56889999999999999887653 554 67889999999999987764 4478
Q ss_pred ccCCCCCcEEEccCCCCCC
Q 016362 344 LDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 344 l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|+.+++..+.+..
T Consensus 297 l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGGSCTTCEEECCGGGSCC
T ss_pred HhhccCceEEeCCHHHHHH
Confidence 9999999999999887764
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.5e-23 Score=216.57 Aligned_cols=249 Identities=14% Similarity=0.122 Sum_probs=156.1
Q ss_pred hHHHHHHhccccccEeecCCcc-cCC--CCcchhhh------cCcccEEECCCCcCCChHHHHH--HHhcCCCCCEEEcc
Q 016362 122 DKIQDKFSKFEELTSAALPYLG-VSS--PGANIGTI------VTNLKELDLTGNLLSDWKDIGA--FGEQLPALAVLNLS 190 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~-i~~--~~~~~~~~------~~~L~~L~L~~n~l~~~~~~~~--~l~~l~~L~~L~ls 190 (390)
..+|..+.++++|+.|++++|. +++ ++..+..+ +++|++|++++|.+. .+|. .+..+++|+.|+++
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECT
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECC
Confidence 4566777788888888888886 665 33333332 247888888888777 3555 67777888888888
Q ss_pred CCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCc-ccEEeccCCCccccCCC---------------------
Q 016362 191 NNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA-LEELHLMGNSISEITPV--------------------- 248 (390)
Q Consensus 191 ~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~--------------------- 248 (390)
+|+++ .+|.+..+++|+.|++++|.+. .++..+..+++ |++|++++|.++.++..
T Consensus 582 ~N~l~-~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 582 HNKVR-HLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSCCC-BCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcc-cchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 87777 4446777777777777777766 34444456666 77777777766643321
Q ss_pred ----CCCccC--CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCC-c----------hhhhhhc
Q 016362 249 ----SSPIVQ--GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNND-T----------IHELVSA 311 (390)
Q Consensus 249 ----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~----------~l~~~~~ 311 (390)
++..+. .+++|+.|+|++|.++..+. ..+..+++|+.|+|++|.|+.+ |... . .++.|++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~i--p~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSI--PENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCC--CTTSSSCTTSCCTTGGGCCEEEC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCcc--ChHHhccccccccccCCccEEEC
Confidence 111111 12356666666666665543 3344677777777777777755 3321 1 4556666
Q ss_pred ccccccCCC------CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC------CCCCCCCCcchhhhhhhhhcCC
Q 016362 312 HESHEESYL------PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE------NPVSDPGRGGISRFAIIARLGK 379 (390)
Q Consensus 312 ~~~~~~~~~------~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~~~~~~~i~~l~~ 379 (390)
++|.+..+. .+++|++|+|++|+|++++ ..+..+++|+.|+|++ |.+. +.+|.. ++.+++
T Consensus 736 s~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp--~~l~~L~~L~~L~Ls~N~~ls~N~l~----~~ip~~--l~~L~~ 807 (876)
T 4ecn_A 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP--TQPLNSSQLKAFGIRHQRDAEGNRIL----RQWPTG--ITTCPS 807 (876)
T ss_dssp CSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC--CGGGGCTTCCEEECCCCBCTTCCBCC----CCCCTT--GGGCSS
T ss_pred CCCCCccchHHhhhccCCCcCEEEeCCCCCCccc--hhhhcCCCCCEEECCCCCCccccccc----ccChHH--HhcCCC
Confidence 666554332 5677777777777777753 4566777777777766 3333 245555 667777
Q ss_pred ceEecCcc
Q 016362 380 IKILNGSE 387 (390)
Q Consensus 380 L~~Ln~s~ 387 (390)
|+.|+++.
T Consensus 808 L~~L~Ls~ 815 (876)
T 4ecn_A 808 LIQLQIGS 815 (876)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 77777764
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=9.1e-24 Score=204.26 Aligned_cols=233 Identities=20% Similarity=0.222 Sum_probs=191.0
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
++..+|..+. ++++.|++++|.+...++..+..+++|++|+|++|.+..+ .+..+..+++|++|++++|+++...+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE--CGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc--ChhhccCCccCCEEECCCCcCCeeCH
Confidence 3445554332 6789999999999988874445569999999999999863 24678899999999999999998776
Q ss_pred -CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016362 200 -GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 200 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++| .+..+... .+..+++|+.|+|++|.++..+ .
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~ 202 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLREIP---N 202 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSSCC---C
T ss_pred hHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCcccc---c
Confidence 58899999999999999874 23334578999999999994 45555443 6788999999999999999865 4
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016362 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|+|++|+++++. +.. +..+++|++|+|++|+|++++ ...+..+++|+.|+|++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIR-PGS----------------FQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEEC-TTT----------------TTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTT
T ss_pred cCCCcccCEEECCCCccCccC-hhh----------------hccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCC
Confidence 788999999999999999984 333 678899999999999999874 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.++. ++.. .+..+++|+.|+++.
T Consensus 265 N~l~~-----~~~~-~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 265 NNLTL-----LPHD-LFTPLHHLERIHLHH 288 (440)
T ss_dssp SCCCC-----CCTT-TTSSCTTCCEEECCS
T ss_pred CCCCc-----cChh-HhccccCCCEEEcCC
Confidence 99985 3322 267899999999874
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1e-23 Score=196.07 Aligned_cols=227 Identities=20% Similarity=0.238 Sum_probs=180.3
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC--ccC-CC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVT-GL 201 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~-~~ 201 (390)
|..+..+++|++|++++|.+...+..+. ++|++|++++|.+.. ..+..+..+++|++|++++|.+.. ..+ .+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 5678899999999999999988766543 799999999999986 335678899999999999999864 223 57
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016362 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
..+++|++|++++|.++. ++. ...++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.++ ..+..+
T Consensus 168 ~~l~~L~~L~l~~n~l~~--l~~--~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 239 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITT--IPQ--GLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDN-GSLANT 239 (330)
T ss_dssp GGCTTCCEEECCSSCCCS--CCS--SCCTTCSEEECTTSCCCEECTG---GGTTCTTCCEEECCSSCCCEECT-TTGGGS
T ss_pred cCCCCcCEEECCCCcccc--CCc--cccccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCceeCh-hhccCC
Confidence 789999999999998873 222 1237899999999999987654 68889999999999999988765 567889
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc------CCCCCcEEEc
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD------SFPKLMDIRL 355 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~------~l~~L~~L~l 355 (390)
++|++|++++|.++.+ |.. +..+++|++|++++|+|++++. ..+. ..+.|+.|++
T Consensus 240 ~~L~~L~L~~N~l~~l--p~~----------------l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 240 PHLRELHLNNNKLVKV--PGG----------------LADHKYIQVVYLHNNNISAIGS-NDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp TTCCEEECCSSCCSSC--CTT----------------TTTCSSCCEEECCSSCCCCCCT-TSSSCSSCCTTSCCCSEEEC
T ss_pred CCCCEEECCCCcCccC--Chh----------------hccCCCcCEEECCCCcCCccCh-hhcCCcccccccccccceEe
Confidence 9999999999999976 654 5678999999999999998753 3443 3478999999
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++||+.... ..|.. +..++.|+.++++.
T Consensus 301 ~~N~~~~~~--i~~~~--f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 301 FSNPVQYWE--IQPST--FRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSSSCGGG--SCGGG--GTTCCCGGGEEC--
T ss_pred ecCcccccc--cCccc--cccccceeEEEecc
Confidence 999987421 12233 66788888888764
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.3e-23 Score=203.89 Aligned_cols=233 Identities=20% Similarity=0.226 Sum_probs=190.4
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
++..+|..+ .++++.|++++|.+....+..+..+++|++|+|++|.+..+ .+..+..+++|++|++++|+++..++
T Consensus 65 ~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 65 GLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc--ChhhccCcccCCEEECCCCcCCccCh
Confidence 344455333 25899999999999988775445569999999999999863 34678899999999999999998776
Q ss_pred C-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccC-CCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016362 200 G-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 200 ~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
. +..+++|++|++++|.+.. .....+..+++|++|++++ +.+..+... .+..+++|+.|+|++|.+++.+ .
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~ 213 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMP---N 213 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCC---C
T ss_pred hhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccc---c
Confidence 4 8889999999999999874 2333457899999999998 455555543 6788999999999999999865 4
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016362 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|+|++|.++++. |.. +..+++|++|+|++|++++.. ...+..+++|+.|+|++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIR-PGS----------------FHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAH 275 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEEC-GGG----------------GTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred ccccccccEEECcCCcCcccC-ccc----------------ccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCC
Confidence 788999999999999999874 332 678899999999999999874 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.++. ++.. .+..+++|+.|+++.
T Consensus 276 N~l~~-----~~~~-~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 276 NNLSS-----LPHD-LFTPLRYLVELHLHH 299 (452)
T ss_dssp SCCSC-----CCTT-SSTTCTTCCEEECCS
T ss_pred CcCCc-----cChH-HhccccCCCEEEccC
Confidence 99985 3322 267899999999874
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.5e-24 Score=214.45 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=173.6
Q ss_pred chhhhcCcccEEECCCCcCCCh---------------HHHHHHHh--cCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016362 150 NIGTIVTNLKELDLTGNLLSDW---------------KDIGAFGE--QLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~l~~~---------------~~~~~~l~--~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
.+.. +++|++|+|++|.+++. +.+|..+. ++++|++|++++|.+.+..| .+..+++|++|+
T Consensus 201 ~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 4444 59999999999999860 01788888 99999999999999888777 689999999999
Q ss_pred eeccc-CCHHHHHHHHhcC------CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 212 LNCTG-VNWMQVEILKHSL------PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 212 L~~n~-l~~~~~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+++|. +++..++..+..+ ++|++|++++|.++.++. ...+..+++|+.|++++|.+++..+ .++.+++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L 355 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKL 355 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCCCCEEeCcCCcCccchh--hhCCCCCC
Confidence 99998 8873455555665 999999999999985432 0057889999999999999984332 57788999
Q ss_pred CeEecCCCccccccCCCCCc---h-hhhhhcccccccCCCC------CCCCCEEeCCCCCCCCchhhhhcc-------CC
Q 016362 285 EQLYLNKNNLNRIYYPNNDT---I-HELVSAHESHEESYLP------FQNLCCLLLGNNMIEDLASIDSLD-------SF 347 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~---~-l~~~~~~~~~~~~~~~------l~~L~~L~Ls~N~i~~~~~~~~l~-------~l 347 (390)
++|++++|.++.+ |.... . ++.+++++|.+..+.. +++|++|++++|.+++.. +..+. .+
T Consensus 356 ~~L~L~~N~l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 356 ASLNLAYNQITEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFDPLDPTPFKG 432 (636)
T ss_dssp SEEECCSSEEEEC--CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSCTTCSSCCCC
T ss_pred CEEECCCCccccc--cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc-hhhhcccccccccC
Confidence 9999999999855 55433 3 5667777777654332 347899999999988752 34555 67
Q ss_pred CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 348 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 348 ~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|++|++++|.+.. +|.. ++..+++|+.|+++.
T Consensus 433 ~~L~~L~Ls~N~l~~-----lp~~-~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 433 INVSSINLSNNQISK-----FPKE-LFSTGSPLSSINLMG 466 (636)
T ss_dssp CCEEEEECCSSCCCS-----CCTH-HHHTTCCCSEEECCS
T ss_pred CCCCEEECcCCccCc-----CCHH-HHccCCCCCEEECCC
Confidence 799999999999884 4543 245689999999875
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.1e-23 Score=184.25 Aligned_cols=205 Identities=24% Similarity=0.294 Sum_probs=172.6
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCccEEE
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~ 211 (390)
..+.++++++.++.++..+. +++++|++++|.+..+. +..+..+++|++|++++|.++...+. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 46789999999998776443 68999999999998632 34678899999999999999877664 67899999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.+.. ..+..+..+++|++|++++|.++...+. .+..+++|++|+|++|.++..+. ..+..+++|++|++++
T Consensus 92 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecC
Confidence 99999874 2334457889999999999999988765 67889999999999999998875 5678999999999999
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016362 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 292 n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
|.++.+. +.. +..+++|++|+|++|++++++. ..+..+++|+.|++++||+.-++.
T Consensus 167 n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 167 NQLKRVP-EGA----------------FDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SCCSCCC-TTT----------------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcCcEeC-hhH----------------hccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCCc
Confidence 9999874 222 5678999999999999998753 568889999999999999987653
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2e-23 Score=209.91 Aligned_cols=244 Identities=20% Similarity=0.105 Sum_probs=194.5
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
.|+.+++++|.+...++..+..+++|++|++++|.++ .+|..+..+++|++|++++|++....+ .+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS---CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC---CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 6889999999999888865555799999999999988 456678899999999999999987766 688999999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.+........+..+++|++|++++|.+++.... +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-NLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAF 409 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES-TTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTT
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCc-chhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCC
Confidence 9999876433334457889999999999999877511 2257889999999999999987765 5788899999999999
Q ss_pred CccccccCCCC---CchhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCc--hhhhhccCCCCCcEEEccCCCCC
Q 016362 292 NNLNRIYYPNN---DTIHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDL--ASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 292 n~l~~~~~~~~---~~~l~~~~~~~~~~~~-----~~~l~~L~~L~Ls~N~i~~~--~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
|.+++...+.. ...++.+++++|.+.+ +..+++|++|++++|++++. +....+..+++|++|++++|.+.
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 99987653332 3455677777776544 45688999999999998763 22245778899999999999987
Q ss_pred CCCCcchhhhhhhhhcCCceEecCcc
Q 016362 362 DPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 362 ~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+ ..|.. ++.+++|+.|+++.
T Consensus 490 ~----~~~~~--~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 490 S----IDQHA--FTSLKMMNHVDLSH 509 (606)
T ss_dssp E----ECTTT--TTTCTTCCEEECCS
T ss_pred c----cChhh--hccccCCCEEECCC
Confidence 4 33444 78899999999875
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.1e-24 Score=198.52 Aligned_cols=228 Identities=19% Similarity=0.161 Sum_probs=188.2
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
++|++|++++|.+..++..++..+++|++|++++|.+......+..+..+++|++|++++|.+...++.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 68999999999999888766556799999999999998543334566789999999999999987666788999999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCC-chhhhhcCCCCCcCeEecC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE-WSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~L~ 290 (390)
+++|.++.......+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+ ..+ ..+..+++|++|+++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECC
Confidence 9999887422223457889999999999999887654 67889999999999999876 222 567889999999999
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh
Q 016362 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR 370 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 370 (390)
+|.++++. |.. +..+++|++|+|++|++++.+. ..+..+++|++|++++|++.+ ..+.
T Consensus 184 ~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~----~~~~ 241 (306)
T 2z66_A 184 QCQLEQLS-PTA----------------FNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMT----SKKQ 241 (306)
T ss_dssp TSCCCEEC-TTT----------------TTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCB----CSSS
T ss_pred CCCcCCcC-HHH----------------hcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcc----cCHH
Confidence 99999874 333 6778999999999999998753 468889999999999999985 3344
Q ss_pred hhhhhhcC-CceEecCcc
Q 016362 371 FAIIARLG-KIKILNGSE 387 (390)
Q Consensus 371 ~~~i~~l~-~L~~Ln~s~ 387 (390)
. ++.++ +|+.|+++.
T Consensus 242 ~--~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 242 E--LQHFPSSLAFLNLTQ 257 (306)
T ss_dssp S--CCCCCTTCCEEECTT
T ss_pred H--HHhhhccCCEEEccC
Confidence 3 66774 899999874
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.5e-23 Score=208.35 Aligned_cols=165 Identities=20% Similarity=0.168 Sum_probs=115.2
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc--cCCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE--VTGLP 202 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~ 202 (390)
+..+.++++|++|++++|.+...++..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|+++.. ++.+.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 3457889999999999999988876444456999999999999987 3456688999999999999998853 34688
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
.+++|++|++++|.+.....+..+..+++|++|++++|.+++..+. .+..+++|+.|+++.|.+...+. ..+..++
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 196 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLTLHLSESAFLLE-IFADILS 196 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSBSTTHHH-HHHHSTT
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh---hhhccccCceEecccCcccccch-hhHhhcc
Confidence 8999999999998743222233457889999999999999876544 45555555555555554443332 1222344
Q ss_pred CcCeEecCCCccc
Q 016362 283 SLEQLYLNKNNLN 295 (390)
Q Consensus 283 ~L~~L~L~~n~l~ 295 (390)
+|++|++++|+++
T Consensus 197 ~L~~L~L~~n~l~ 209 (549)
T 2z81_A 197 SVRYLELRDTNLA 209 (549)
T ss_dssp TBSEEEEESCBCT
T ss_pred cccEEEccCCccc
Confidence 4444444444433
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.3e-23 Score=188.90 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=168.0
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016362 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
..+++|+.|+++++.+...+ .+.. +++|++|++++|.+.++. . +..+++|++|++++|+++.. +.+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~-l~~L~~L~L~~n~i~~~~---~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQY-LNNLIGLELKDNQITDLA---P-LKNLTKITELELSGNPLKNV-SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhc-cCCCCEEEccCCcCCCCh---h-HccCCCCCEEEccCCcCCCc-hhhcCCCCCC
Confidence 45779999999999998875 4544 599999999999999743 3 88999999999999999865 5688999999
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.++ +..+++|+.|+
T Consensus 111 ~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEE
Confidence 99999999985 333 5889999999999999987653 6788999999999999998764 78899999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+++|.++++. . +..+++|++|+|++|++++++ .+..+++|+.|++++|+++.
T Consensus 180 l~~n~l~~~~--~-----------------l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDIS--P-----------------LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCG--G-----------------GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcCh--h-----------------hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 9999999873 2 457899999999999999876 38889999999999999975
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=3.8e-23 Score=192.41 Aligned_cols=229 Identities=17% Similarity=0.142 Sum_probs=136.2
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+.++++|++|++++|.+....+.....+++|++|++++|.+.. +|..+ .++|++|++++|++....+ .+..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS---CCSSC--CTTCCEEECCSSCCCCCCSGGGSSCS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc---cCccc--cccCCEEECCCCccCccCHhHhCCCc
Confidence 45566666666666666665544333334666666666666653 22222 1566666666666655444 255666
Q ss_pred CccEEEeecccCCHH-HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 206 SIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+|++|++++|.++.. ..+..+..+ +|++|++++|.+++++.. + .++|+.|++++|.+++.++ ..+..+++|
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~-~~l~~l~~L 219 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL-EDLLRYSKL 219 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT-TSSTTCTTC
T ss_pred cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 666666666655421 111222233 566666666666654332 1 1466666677776666553 455666677
Q ss_pred CeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
++|++++|.++++. +.. +..+++|++|+|++|+++.++ ..+..+++|++|++++|+|+...
T Consensus 220 ~~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 220 YRLGLGHNQIRMIE-NGS----------------LSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SCCBCCSSCCCCCC-TTG----------------GGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCC
T ss_pred CEEECCCCcCCcCC-hhH----------------hhCCCCCCEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccC
Confidence 77777777666652 111 566889999999999999765 46888999999999999998643
Q ss_pred CcchhhhhhhhhcCCceEecCcc
Q 016362 365 RGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 365 ~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
...+.........+.|+.|+++.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCS
T ss_pred hhHccccccccccccccceEeec
Confidence 22222111112256788887764
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-22 Score=197.09 Aligned_cols=235 Identities=22% Similarity=0.270 Sum_probs=122.8
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|++|++++|.+...++ +. .+++|++|++++|.+.... . +..+++|++|++++|.+....+ +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LK-NLTKLVDILMNNNQIADIT---P-LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh-hh-ccccCCEEECCCCccccCh---h-hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 5667777777777777776654 33 3477777777777776532 2 6667777777777776665433 5566666
Q ss_pred cEEEeecccCCHHHHHHH--------------------HhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCC
Q 016362 208 RILVLNCTGVNWMQVEIL--------------------KHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDN 267 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~--------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n 267 (390)
++|++++|.+.. ++.+ +..+++|++|++++|.++... .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----VLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCC--ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCC
Confidence 666666665542 1110 234455556666665555432 2344445555555555
Q ss_pred CCCCchhh-------------------hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC---CCCCCCC
Q 016362 268 CIAEWSEI-------------------LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNL 325 (390)
Q Consensus 268 ~l~~~~~~-------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~L 325 (390)
.+.+..++ ..+..+++|+.|++++|.+++...-.....++.+++++|.+.+ +..+++|
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 289 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred cccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCcc
Confidence 54443320 1123344444444444444443211122233344444443333 2234555
Q ss_pred CEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 326 CCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 326 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|++++|++++++. +..+++|+.|++++|.+.+ ++. ++.+++|+.|+++.
T Consensus 290 ~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~-----~~~---~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD-----ISP---VSSLTKLQRLFFYN 340 (466)
T ss_dssp SEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSC-----CGG---GGGCTTCCEEECCS
T ss_pred CeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCC-----chh---hccCccCCEeECCC
Confidence 555555555555431 4455556666666665553 111 45566666666553
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.5e-23 Score=210.85 Aligned_cols=203 Identities=18% Similarity=0.101 Sum_probs=137.4
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
+++|++|++++|.++....++..+..+++|++|++++|.+...+..+..+++|+.|++++|.+........+..+++|++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 47788888888877753323566778888888888888877666677788888888888887764322234567888888
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCc-hhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccc
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW-SEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~ 313 (390)
|++++|.+++..+. .+..+++|++|++++|.+++. .+ ..+..+++|++|++++|.++++. |..
T Consensus 429 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~-~~~----------- 492 (606)
T 3vq2_A 429 LDISYTNTKIDFDG---IFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQIS-WGV----------- 492 (606)
T ss_dssp EECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEEC-TTT-----------
T ss_pred EECcCCCCCccchh---hhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccC-hhh-----------
Confidence 88888888876554 577788888888888887762 22 45777888888888888888764 332
Q ss_pred ccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcC-CceEecCc
Q 016362 314 SHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLG-KIKILNGS 386 (390)
Q Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~-~L~~Ln~s 386 (390)
+..+++|++|+|++|++++.. +..+..+++|++|++++|.++. +|.. +..++ +|+.|+++
T Consensus 493 -----~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~-----~p~~--~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 493 -----FDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIET-----SKGI--LQHFPKSLAFFNLT 553 (606)
T ss_dssp -----TTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCC-----EESC--GGGSCTTCCEEECC
T ss_pred -----hcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcc-----cCHh--HhhhcccCcEEEcc
Confidence 344556666666666665542 2455555666666666665552 4443 44554 35555554
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=198.01 Aligned_cols=229 Identities=19% Similarity=0.202 Sum_probs=179.5
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~l 204 (390)
.+.++++|+.|++++|.+...++.....+++|++|++++|.++.+ .+..+..+++|++|++++|++..... .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC--CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC--CHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence 578899999999999999988774444469999999999999963 23558899999999999999987765 57889
Q ss_pred CCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016362 205 KSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|. +.. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+...+. ..+..+++
T Consensus 149 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ 223 (353)
T 2z80_A 149 TKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLE-IFVDVTSS 223 (353)
T ss_dssp TTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHH-HHHHHTTT
T ss_pred CCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchh-hhhhhccc
Confidence 999999999984 553 2334457889999999999999988654 68889999999999999988775 44556899
Q ss_pred cCeEecCCCccccccCCCC-----CchhhhhhcccccccC---------CCCCCCCCEEeCCCCCCCCchhhhhccCCCC
Q 016362 284 LEQLYLNKNNLNRIYYPNN-----DTIHELVSAHESHEES---------YLPFQNLCCLLLGNNMIEDLASIDSLDSFPK 349 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~-----~~~l~~~~~~~~~~~~---------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~ 349 (390)
|+.|++++|.+++...... ...++.++++.+.+.+ +..+++|++|++++|+++.++. ..+..+++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~ 302 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTS 302 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCC
Confidence 9999999999988642211 1112223333333222 4568899999999999997752 34678999
Q ss_pred CcEEEccCCCCCCC
Q 016362 350 LMDIRLSENPVSDP 363 (390)
Q Consensus 350 L~~L~l~~n~l~~~ 363 (390)
|++|++++|++..+
T Consensus 303 L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 303 LQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEECCSSCBCCC
T ss_pred CCEEEeeCCCccCc
Confidence 99999999999853
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=7.4e-24 Score=195.98 Aligned_cols=208 Identities=18% Similarity=0.109 Sum_probs=122.2
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH--------------HHHhcCCCCCEEEcc
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG--------------AFGEQLPALAVLNLS 190 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------~~l~~l~~L~~L~ls 190 (390)
+..+..+++|+.|++++|.+.+..+ +. .+++|++|++++|.++.+...+ .....+++|++|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 128 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD-LE-SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE-ET-TCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh-hh-hcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence 4567888888888888888776543 33 3477777777777766421000 000123344444444
Q ss_pred CCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCC
Q 016362 191 NNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269 (390)
Q Consensus 191 ~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l 269 (390)
+|+++...+ .+..+++|++|++++|.++...+..+...+++|++|++++|.+++... ...+++|+.|+|++|.+
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTTCCEEECCSSCC
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-----ccccccCCEEECCCCcC
Confidence 444444433 344455555555555555432222222345555555555555555422 12345566666666665
Q ss_pred CCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC
Q 016362 270 AEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK 349 (390)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~ 349 (390)
++.++ .+..+++|++|+|++|.++.+ |.. +..+++|++|++++|.++....+..+..+++
T Consensus 204 ~~l~~--~~~~l~~L~~L~L~~N~l~~l--~~~----------------~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 204 AFMGP--EFQSAAGVTWISLRNNKLVLI--EKA----------------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CEECG--GGGGGTTCSEEECTTSCCCEE--CTT----------------CCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred Ccchh--hhcccCcccEEECcCCcccch--hhH----------------hhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 55443 244555666666666666554 332 5678999999999999993334577889999
Q ss_pred CcEEEccCCC
Q 016362 350 LMDIRLSENP 359 (390)
Q Consensus 350 L~~L~l~~n~ 359 (390)
|+.|++++|+
T Consensus 264 L~~l~l~~~~ 273 (317)
T 3o53_A 264 VQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHH
T ss_pred ceEEECCCch
Confidence 9999998553
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=9.8e-23 Score=210.47 Aligned_cols=245 Identities=16% Similarity=0.150 Sum_probs=175.3
Q ss_pred HHHHHh--ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCc-CCChHHHHHHHhcCC-------CCCEEEccCCC
Q 016362 124 IQDKFS--KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLP-------ALAVLNLSNNL 193 (390)
Q Consensus 124 i~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~l~-------~L~~L~ls~n~ 193 (390)
+|..+. ++++|+.|++++|.+.+..+.....+++|++|+|++|. +++ ..+|..+..++ +|+.|++++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 788877 99999999999999877666444446999999999998 763 14677666655 99999999999
Q ss_pred CCCccC--CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCC-ccEEEcCCCCCC
Q 016362 194 MSKEVT--GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN-LQLLNLEDNCIA 270 (390)
Q Consensus 194 l~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~-L~~L~L~~n~l~ 270 (390)
+...+. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++.++. .+..+++ |+.|+|++|.++
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~----~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPE----DFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCT----TSCEECTTCCEEECCSSCCC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchH----HHhhccccCCEEECcCCCCC
Confidence 995555 5889999999999999998 455 55889999999999999985432 5777788 999999999888
Q ss_pred CchhhhhcCCC--CCcCeEecCCCcccccc---------------------------CCC----CCchhhhhhccccccc
Q 016362 271 EWSEILKLCQI--RSLEQLYLNKNNLNRIY---------------------------YPN----NDTIHELVSAHESHEE 317 (390)
Q Consensus 271 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~---------------------------~~~----~~~~l~~~~~~~~~~~ 317 (390)
..+. .+..+ ++|+.|+|++|.+++.. .|. ....++.|++++|.+.
T Consensus 633 ~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 YIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 6553 23332 23566666666554421 021 1123344555555544
Q ss_pred CCCC------------CCCCCEEeCCCCCCCCchhhhhcc--CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEe
Q 016362 318 SYLP------------FQNLCCLLLGNNMIEDLASIDSLD--SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKIL 383 (390)
Q Consensus 318 ~~~~------------l~~L~~L~Ls~N~i~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~L 383 (390)
.+.. +++|++|+|++|+|+.++ ..+. .+++|+.|+|++|.+.. +|.. +..+++|+.|
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp--~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~--l~~L~~L~~L 781 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS--DDFRATTLPYLSNMDVSYNCFSS-----FPTQ--PLNSSQLKAF 781 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC--GGGSTTTCTTCCEEECCSSCCSS-----CCCG--GGGCTTCCEE
T ss_pred ccChHHhccccccccccCCccEEECCCCCCccch--HHhhhccCCCcCEEEeCCCCCCc-----cchh--hhcCCCCCEE
Confidence 3221 126777777777777654 3454 77888888888888763 5655 6678888888
Q ss_pred cCcc
Q 016362 384 NGSE 387 (390)
Q Consensus 384 n~s~ 387 (390)
+++.
T Consensus 782 ~Ls~ 785 (876)
T 4ecn_A 782 GIRH 785 (876)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7753
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.4e-24 Score=203.71 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=82.4
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCc-ch---hhhcCcccEEECCCCcCCC--------hHHHHHHHhcCCCCCEEEc
Q 016362 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NI---GTIVTNLKELDLTGNLLSD--------WKDIGAFGEQLPALAVLNL 189 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~---~~~~~~L~~L~L~~n~l~~--------~~~~~~~l~~l~~L~~L~l 189 (390)
..++..+..+++|+.|++++|.++...+ .+ ...+++|++|+|++|.+.. +..+...+..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444555555666666666665554332 11 1124556666666553331 1222233355566666666
Q ss_pred cCCCCCCc----cC-CCCCCCCccEEEeecccCCHHHH---HHHHhcC---------CcccEEeccCCCccccC-CCCCC
Q 016362 190 SNNLMSKE----VT-GLPQLKSIRILVLNCTGVNWMQV---EILKHSL---------PALEELHLMGNSISEIT-PVSSP 251 (390)
Q Consensus 190 s~n~l~~~----~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l---------~~L~~L~l~~n~l~~~~-~~~~~ 251 (390)
++|.+... .+ .+..+++|++|+|++|.++.... ...+..+ ++|++|++++|.++... +.+..
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 66655541 11 34455566666666665543222 1112222 55666666666554211 10001
Q ss_pred ccCCCCCccEEEcCCCCCCCch--h-hh-hcCCCCCcCeEecCCCccc
Q 016362 252 IVQGFDNLQLLNLEDNCIAEWS--E-IL-KLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 252 ~l~~l~~L~~L~L~~n~l~~~~--~-~~-~l~~l~~L~~L~L~~n~l~ 295 (390)
.+..+++|++|+|++|.++... . .. .+..+++|+.|+|++|.++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 2334455666666666555211 0 11 3445556666666666654
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.1e-23 Score=186.46 Aligned_cols=208 Identities=21% Similarity=0.189 Sum_probs=166.8
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEE
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L 210 (390)
+.|+.|++++|.+...++.....+++|++|++++|.+..+ .+..+..+++|++|++++|++....+ .+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc--CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4699999999999988774444469999999999998863 23467889999999999999987765 58899999999
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC----e
Q 016362 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE----Q 286 (390)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~----~ 286 (390)
++++|.+... .+..+..+++|++|++++|.+++.. ++..+..+++|++|+|++|.+++.+. ..+..+++|+ .
T Consensus 106 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~--l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCEE
T ss_pred ECCCCCcccc-CchhcccCCCCCEEECcCCccceec--CchhhccCCCCCEEECCCCCCCcCCH-HHhhhhhhcccccee
Confidence 9999988742 2223478899999999999998753 12368889999999999999998754 3444445555 8
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|++++|.++.+. .. .....+|++|+|++|++++++. ..+..+++|+.|++++|++..++
T Consensus 182 L~ls~n~l~~~~--~~----------------~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 182 LDLSLNPMNFIQ--PG----------------AFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCCCEEC--TT----------------SSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCT
T ss_pred eecCCCcccccC--cc----------------ccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccC
Confidence 999999999873 32 2334589999999999998753 56788999999999999998655
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.5e-23 Score=193.60 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=180.8
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC--ccC-CC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVT-GL 201 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~-~~ 201 (390)
+..+..+++|++|++++|.+...+..+. ++|++|++++|.+..+. +..+..+++|++|++++|.+.. ..+ .+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 5678899999999999999998776554 79999999999998632 3457899999999999999863 333 45
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016362 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
..+ +|++|++++|.++. ++.. ..++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.++ ..+..+
T Consensus 170 ~~l-~L~~L~l~~n~l~~--l~~~--~~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l 240 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTG--IPKD--LPETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIRMIEN-GSLSFL 240 (332)
T ss_dssp CSC-CCSCCBCCSSBCSS--CCSS--SCSSCSCCBCCSSCCCCCCTT---SSTTCTTCSCCBCCSSCCCCCCT-TGGGGC
T ss_pred cCC-ccCEEECcCCCCCc--cCcc--ccCCCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCCcCCh-hHhhCC
Confidence 566 99999999999874 3222 237899999999999988654 68889999999999999998775 567889
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC------CCCCcEEEc
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS------FPKLMDIRL 355 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~------l~~L~~L~l 355 (390)
++|++|++++|+++.+ |.. +..+++|++|++++|+|++.+. ..+.. .+.|+.|++
T Consensus 241 ~~L~~L~L~~N~l~~l--p~~----------------l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRV--PAG----------------LPDLKLLQVVYLHTNNITKVGV-NDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp TTCCEEECCSSCCCBC--CTT----------------GGGCTTCCEEECCSSCCCBCCT-TSSSCSSCCSSSCCBSEEEC
T ss_pred CCCCEEECCCCcCeec--Chh----------------hhcCccCCEEECCCCCCCccCh-hHccccccccccccccceEe
Confidence 9999999999999976 665 5678999999999999998743 44443 578999999
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|++.... ..+.. +..+++|+.|+++.
T Consensus 302 ~~N~~~~~~--~~~~~--~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 302 FNNPVPYWE--VQPAT--FRCVTDRLAIQFGN 329 (332)
T ss_dssp CSSSSCGGG--SCGGG--GTTBCCSTTEEC--
T ss_pred ecCcccccc--cCccc--ccccchhhhhhccc
Confidence 999987311 12333 67889999998865
No 48
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.88 E-value=7.6e-23 Score=146.44 Aligned_cols=79 Identities=33% Similarity=0.658 Sum_probs=69.5
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCCchH
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~~s~~~ 86 (390)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++....+|.+
T Consensus 1 d~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~-~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 1 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCS-TTCEEEECGGGEESSCCC--
T ss_pred CCccCCCEEEECCC--cEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCeEEEEcHHHcccccchhh
Confidence 36899999999764 4699999999999999999999999999999999999999998 58999999999988887776
Q ss_pred HH
Q 016362 87 AL 88 (390)
Q Consensus 87 ~~ 88 (390)
+.
T Consensus 78 ~~ 79 (86)
T 2e3i_A 78 EA 79 (86)
T ss_dssp --
T ss_pred hc
Confidence 54
No 49
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.88 E-value=3.4e-23 Score=151.28 Aligned_cols=88 Identities=26% Similarity=0.517 Sum_probs=67.8
Q ss_pred CCCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCC
Q 016362 4 CNPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGIS 83 (390)
Q Consensus 4 ~~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~~s 83 (390)
.++..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.....
T Consensus 6 ~~~~~~~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~~v~~~~~ 82 (96)
T 2z0w_A 6 SGEGELRLGERVLVVGQ--RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCS-PRYGIFAPPSRVQRVTD 82 (96)
T ss_dssp -----CCTTCCCCCCCC--CCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCC-TTSEEEECGGGCCCTTC
T ss_pred CCcccCCCCCEEEECCC--cEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHceeccc
Confidence 35578999999999764 4599999999999999999999999999999999999999996 59999999999998888
Q ss_pred chHHHHhhhcC
Q 016362 84 LPEALRVRYRG 94 (390)
Q Consensus 84 ~~~~~~~~y~~ 94 (390)
+++++.+.+..
T Consensus 83 ~~~~~~e~~~~ 93 (96)
T 2z0w_A 83 SLDTLSEISGP 93 (96)
T ss_dssp -----------
T ss_pred hhhhhhhhccc
Confidence 88888876643
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6e-22 Score=192.91 Aligned_cols=206 Identities=28% Similarity=0.326 Sum_probs=126.8
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
+++|++|++++|.+..+. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++. +..+++|++
T Consensus 176 l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~ 247 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IGT-LASLTNLTD 247 (466)
T ss_dssp CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCSE
T ss_pred CCCCCEEECcCCcCCCCh----hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--chh-hhcCCCCCE
Confidence 355666666666655432 24556666666666666654433 4456666666666666553 222 355666666
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccc
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~ 314 (390)
|++++|.+++..+ +..+++|+.|++++|.+++.++ +..+++|+.|++++|+++++........++.+++++|
T Consensus 248 L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 248 LDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp EECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred EECCCCccccchh-----hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC
Confidence 6666666665432 4556667777777777666543 5566777777777777766532222334455666666
Q ss_pred cccCC---CCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 315 HEESY---LPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 315 ~~~~~---~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+.+. ..+++|++|++++|++++.+ .+..+++|+.|++++|++.+ ..| ++++++|+.|+++.
T Consensus 320 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~----~~~----~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 320 NISDISPVSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISD----LTP----LANLTRITQLGLND 384 (466)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCB----CGG----GTTCTTCCEEECCC
T ss_pred cCCCchhhccCccCCEeECCCCccCCch---hhccCCCCCEEeCCCCccCc----cch----hhcCCCCCEEeccC
Confidence 55543 35677777777777777753 56677788888888887763 222 56777787777654
No 51
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.88 E-value=8e-23 Score=144.26 Aligned_cols=75 Identities=35% Similarity=0.715 Sum_probs=64.9
Q ss_pred CCCCCCCCCEEEeCCCceeeEEEEEeeecCC-CCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQG-YSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~-~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
.|.+++||+||.+..+. ++|||||+|++++ .+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..+
T Consensus 2 ~m~~i~vG~Rv~v~~~~-~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~-~~~G~Fvr~~~v~~g 77 (84)
T 4b6m_A 2 HMETIHVGDRCLCRPGD-RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQ-PNYGGFLRPDQVEVG 77 (84)
T ss_dssp ---CCCTTCEEEETTTT-EEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCC-TTSEEEECGGGEEEC
T ss_pred CccCcccCCEEEEcCCC-eEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecC-CCeEEEecHHHeEEC
Confidence 37899999999996443 5699999999977 579999999999999999999999999998 599999999998654
No 52
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.88 E-value=1.1e-22 Score=140.68 Aligned_cols=70 Identities=37% Similarity=0.737 Sum_probs=64.2
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
..++||+||.+.++ +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|+|++++++.
T Consensus 1 d~~~vG~rv~v~g~--~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~-p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 1 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLT 70 (72)
T ss_dssp -CCCTTCEEEETTT--EEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCS-TTCEEEECGGGEE
T ss_pred CCcccCCEEEECCC--CEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccC-CCCEEEecHHHcc
Confidence 36899999999775 4699999999999999999999999999999999999999997 6999999998864
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3e-23 Score=191.27 Aligned_cols=209 Identities=17% Similarity=0.174 Sum_probs=164.0
Q ss_pred ccccccEeecCCcccCCCCc-chh-hhcCcccEEECCCCcCCChHH-HH-HHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016362 130 KFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWKD-IG-AFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 130 ~l~~L~~L~l~~~~i~~~~~-~~~-~~~~~L~~L~L~~n~l~~~~~-~~-~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
.+++|++|++++|.+.+..+ .+. ..+++|++|++++|.+..... ++ ..+..+++|++|++++|++....+ .+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45679999999999987776 432 446999999999999986211 11 334579999999999999988776 68899
Q ss_pred CCccEEEeecccCCHHH-HH--HHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016362 205 KSIRILVLNCTGVNWMQ-VE--ILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~-~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
++|++|++++|.+.... ++ .....+++|++|++++|.++.........+..+++|++|+|++|.+++..+ ..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhc
Confidence 99999999999987532 21 223578999999999999975532101124677999999999999998743 234444
Q ss_pred ---CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 282 ---RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 282 ---~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
++|++|+|++|+|+.+ |.. + +++|++|+|++|+|++++. +..+++|+.|++++|
T Consensus 248 ~~~~~L~~L~Ls~N~l~~l--p~~----------------~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQV--PKG----------------L--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCTTCCCEECCSSCCCSC--CSC----------------C--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSST
T ss_pred cCcCcCCEEECCCCCCCch--hhh----------------h--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCC
Confidence 7999999999999976 554 2 3799999999999999753 677899999999999
Q ss_pred CCCC
Q 016362 359 PVSD 362 (390)
Q Consensus 359 ~l~~ 362 (390)
+|++
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9985
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5e-22 Score=202.43 Aligned_cols=138 Identities=25% Similarity=0.260 Sum_probs=64.0
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
+.++++|++|++++|.+....+.....+++|++|++++|.++. +| ..+..+++|++|++++|++....+ .+..++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ---LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc---cChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 4455555555555555555444333334555555555555543 22 234455555555555555544433 344555
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCcc--CCCCCccEEEcCCCCCCCc
Q 016362 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIV--QGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~ 272 (390)
+|++|++++|.++.. .+..+..+++|++|++++|.+++..+. .+ ..+++|+.|++++|.+++.
T Consensus 122 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 122 NLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSE---ELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp TCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHH---HHGGGTTCEESEEECTTCCCCCB
T ss_pred CCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHH---HhhccccccccEEECCCCccccc
Confidence 555555555544421 111223445555555555555443321 11 1234555555555555443
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=204.30 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=90.1
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-c-CCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-V-TGLP 202 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~-~-~~~~ 202 (390)
+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++. +|.. .+++|++|++++|++++. . ..+.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCH--PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cCcc--ccCCccEEeccCCccccccchhhhc
Confidence 4688999999999999999998866444456999999999999985 4443 799999999999999873 3 3688
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcc--cEEeccCCCc
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPAL--EELHLMGNSI 242 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l 242 (390)
.+++|++|++++|.++.. .+..+++| ++|++++|.+
T Consensus 113 ~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred cCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence 999999999999999852 23667777 9999999988
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=197.06 Aligned_cols=246 Identities=17% Similarity=0.153 Sum_probs=161.5
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
|..+..+++|++|++++|.+..++.. .+++|++|++++|.+..+ .+|..+..+++|++|++++|++.+. .+..+
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l 135 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS--SVLPI 135 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG--GGGGG
T ss_pred hHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh--hcccc
Confidence 56789999999999999999976655 469999999999999863 2467889999999999999988631 11122
Q ss_pred C-------------------------------------------------------------------------------
Q 016362 205 K------------------------------------------------------------------------------- 205 (390)
Q Consensus 205 ~------------------------------------------------------------------------------- 205 (390)
+
T Consensus 136 ~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 215 (520)
T 2z7x_B 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215 (520)
T ss_dssp TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG
T ss_pred ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh
Confidence 2
Q ss_pred --------------------------------CccEEEeecccCCH-------------------------------HHH
Q 016362 206 --------------------------------SIRILVLNCTGVNW-------------------------------MQV 222 (390)
Q Consensus 206 --------------------------------~L~~L~L~~n~l~~-------------------------------~~~ 222 (390)
+|++|++++|.+.+ ..+
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 23333333333221 011
Q ss_pred HHHH---------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCC
Q 016362 223 EILK---------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQ 280 (390)
Q Consensus 223 ~~~~---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 280 (390)
...+ ..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.+.+ ..+..
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE---NCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT---TCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh---hhccCCCCCEEEccCCccCccccchHHHhh
Confidence 1110 3445566666666666654332 456667777777777777764432 34667
Q ss_pred CCCcCeEecCCCcccc-ccCC--CCCchhhhhhcccccccCCC--CC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016362 281 IRSLEQLYLNKNNLNR-IYYP--NNDTIHELVSAHESHEESYL--PF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~-~~~~--~~~~~l~~~~~~~~~~~~~~--~l-~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
+++|++|++++|.+++ +... .....++.+++++|.+.+.. .+ ++|++|++++|+|+.++ ..+..+++|++|+
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIP--KQVVKLEALQELN 450 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccc--hhhhcCCCCCEEE
Confidence 7777777777777776 4211 12244566677777654322 22 68888888888888765 4455788888888
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 355 LSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+++|+++. +|.. .+..+++|+.|+++.
T Consensus 451 L~~N~l~~-----l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 451 VASNQLKS-----VPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCSSCCCC-----CCTT-TTTTCTTCCEEECCS
T ss_pred CCCCcCCc-----cCHH-HhccCCcccEEECcC
Confidence 88888874 3332 367788888888764
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.3e-21 Score=188.03 Aligned_cols=230 Identities=19% Similarity=0.157 Sum_probs=134.8
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+++|+.|++++|.+++.+ +.. +++|++|++++|.++++ + +..+++|++|++++|++++. .+..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~-l~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQ-NTNLTYLACDSNKLTNL---D--VTPLTKLTYLNCDTNKLTKL--DVSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCSCC---C--CTTCTTCCEEECCSSCCSCC--CCTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeEc--ccc-CCCCCEEECcCCCCcee---e--cCCCCcCCEEECCCCcCCee--cCCCCCc
Confidence 4666777777777777776653 333 47777777777777653 2 56677777777777777654 2666777
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
|++|++++|.+++. + +..+++|++|++++|...+.. .+..+++|+.|++++|.+++.+ +..+++|+.
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~ 195 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNR 195 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCE
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCccccc-----ccccCCcCCEEECCCCccceec----cccCCCCCE
Confidence 77777777776642 1 356677777777777433222 2456677777777777777743 566777777
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCC--CCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESY--LPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|++++|.++++. -.....++.+++++|.+.++ ..+++|++|++++|++++.+ +..+++|+.|++++|.+....
T Consensus 196 L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 196 LNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCC
T ss_pred EECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEE
Confidence 777777777763 12223344555555544442 23455666666666655543 223333333333333332211
Q ss_pred C------cchhhhhhhhhcCCceEecCccc
Q 016362 365 R------GGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 365 ~------~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
. +.+| .+.+++|+.|+++..
T Consensus 271 l~~n~~~~~~~----~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 271 LTHNTQLIYFQ----AEGCRKIKELDVTHN 296 (457)
T ss_dssp CTTCTTCCEEE----CTTCTTCCCCCCTTC
T ss_pred CCCCccCCccc----ccccccCCEEECCCC
Confidence 0 1222 345677777777653
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.9e-22 Score=181.12 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=79.1
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCcc
Q 016362 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIR 208 (390)
Q Consensus 130 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~ 208 (390)
.+++|+.|+++++.+...+ .+.. +++|++|++++|.+.++ ..+..+++|++|++++|.+++..+. +..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~-l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQY-LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGG-CTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCccccc-cccc-CCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445555555555555433 2222 35555555555555542 1344555555555555555544442 44555555
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+++.++ ..+..+++|++|+
T Consensus 113 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred EEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEE
Confidence 55555555542 1222234455555555555555544332 34445555555555555554443 3344555555555
Q ss_pred cCCCccccc
Q 016362 289 LNKNNLNRI 297 (390)
Q Consensus 289 L~~n~l~~~ 297 (390)
+++|.++++
T Consensus 188 L~~N~l~~~ 196 (272)
T 3rfs_A 188 LYQNQLKSV 196 (272)
T ss_dssp CCSSCCSCC
T ss_pred CCCCcCCcc
Confidence 555555544
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.3e-22 Score=202.88 Aligned_cols=252 Identities=21% Similarity=0.226 Sum_probs=142.1
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHh--cCCCCCEEEccCCCCCCccC-CCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGE--QLPALAVLNLSNNLMSKEVT-GLP 202 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~--~l~~L~~L~ls~n~l~~~~~-~~~ 202 (390)
.+..+++|+.|++++|.+.+.++..+..+++|++|++++|.+... .++ ..+. ..++|+.|++++|++.+..+ .+.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-TLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-hcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 455667777777777777776664444457777777766653210 000 0111 11345555555555554443 355
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC-----------------------CCCccCCCCCc
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV-----------------------SSPIVQGFDNL 259 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~l~~L 259 (390)
.+++|+.|++++|.+.+......+..+++|++|++++|.+++..+. .+..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 5666666666666554211112234555555555555554433221 22356667777
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccC---C-------CCCchhhhhhcccccccC-----CCCCCC
Q 016362 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYY---P-------NNDTIHELVSAHESHEES-----YLPFQN 324 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~-------~~~~~l~~~~~~~~~~~~-----~~~l~~ 324 (390)
+.|+|++|.++..++ ..+..+++|++|++++|.++.+.. | .....++.+++++|.+.. +..+++
T Consensus 483 ~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 483 TILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEECCCCCCCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 777777777776654 456677777777777777776521 0 112334555666665442 344667
Q ss_pred CCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhh-hcCCceEecCcc
Q 016362 325 LCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIA-RLGKIKILNGSE 387 (390)
Q Consensus 325 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~-~l~~L~~Ln~s~ 387 (390)
|++|+|++|+++.++ ...+..+++|+.|++++|.++. ++.. .++ .+++|+.|+++.
T Consensus 562 L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~-----~~~~-~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITS-----VEKK-VFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCB-----CCHH-HHHHHHTTCSEEECTT
T ss_pred cceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCc-----cChh-HhcccccccCEEEccC
Confidence 777777777777654 2455667777777777777763 2221 133 567777777653
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.7e-22 Score=201.44 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=74.8
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc--CCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV--TGLPQ 203 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~ 203 (390)
..+.++++|++|++++|.+++..+..+..+++|++|++++|.++. +|.. .+++|++|++++|+++... ..+..
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE---ECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc---cCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 578899999999999999998877544556999999999999985 4444 7999999999999998754 36889
Q ss_pred CCCccEEEeecccCC
Q 016362 204 LKSIRILVLNCTGVN 218 (390)
Q Consensus 204 l~~L~~L~L~~n~l~ 218 (390)
+++|++|++++|.++
T Consensus 145 l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 145 LTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCCEEEEECSBCC
T ss_pred cCcccEEecCCCccc
Confidence 999999999999875
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=3.8e-23 Score=190.77 Aligned_cols=236 Identities=17% Similarity=0.051 Sum_probs=143.7
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHh-------cCCCCCEEEccCCCCCCccC-CC
Q 016362 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGE-------QLPALAVLNLSNNLMSKEVT-GL 201 (390)
Q Consensus 130 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~-------~l~~L~~L~ls~n~l~~~~~-~~ 201 (390)
..++|+.+++++|.+ ..+..+.. .|+.|++++|.+... .++..+. .+++|++|++++|++++..+ .+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHHHHH---HHhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345566666666666 43333333 266666666666431 1222222 56677777777776665444 33
Q ss_pred --CCCCCccEEEeecccCCHHHHHHHHhcC-----CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchh
Q 016362 202 --PQLKSIRILVLNCTGVNWMQVEILKHSL-----PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (390)
Q Consensus 202 --~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 274 (390)
..+++|++|++++|.++.. +..+..+ ++|++|++++|.+++..+. .+..+++|++|+|++|++.+...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcCcchH
Confidence 5666777777777666542 2222333 6677777777776665543 45666667777777776654311
Q ss_pred h-hhc--CCCCCcCeEecCCCccccccC-CC----CCchhhhhhcccccccC------CCCCCCCCEEeCCCCCCCCchh
Q 016362 275 I-LKL--CQIRSLEQLYLNKNNLNRIYY-PN----NDTIHELVSAHESHEES------YLPFQNLCCLLLGNNMIEDLAS 340 (390)
Q Consensus 275 ~-~~l--~~l~~L~~L~L~~n~l~~~~~-~~----~~~~l~~~~~~~~~~~~------~~~l~~L~~L~Ls~N~i~~~~~ 340 (390)
. ..+ ..+++|++|++++|+++.+.. +. ....++.+++++|.+.+ +..+++|++|+|++|+|+.++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip- 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP- 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-
Confidence 1 222 566677777777776663310 10 11344555666665544 234689999999999999765
Q ss_pred hhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 341 IDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 341 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
..+. ++|++|++++|.|++ +|. ++.+++|+.|+++.
T Consensus 270 -~~~~--~~L~~L~Ls~N~l~~-----~p~---~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 270 -KGLP--AKLSVLDLSYNRLDR-----NPS---PDELPQVGNLSLKG 305 (312)
T ss_dssp -SSCC--SEEEEEECCSSCCCS-----CCC---TTTSCEEEEEECTT
T ss_pred -hhcc--CCceEEECCCCCCCC-----Chh---HhhCCCCCEEeccC
Confidence 3444 899999999999985 343 67899999999874
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.2e-23 Score=202.74 Aligned_cols=211 Identities=18% Similarity=0.136 Sum_probs=116.0
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~ 205 (390)
..+..+++|+.|++++|.+++.++ +. .+++|++|+|++|.+.++. ..++|++|++++|.+.+.++. .++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~-~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L~L~~N~l~~~~~~--~l~ 120 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LE-SLSTLRTLDLNNNYVQELL-------VGPSIETLHAANNNISRVSCS--RGQ 120 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CT-TCTTCCEEECCSSEEEEEE-------ECTTCCEEECCSSCCCCEEEC--CCS
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cc-cCCCCCEEEecCCcCCCCC-------CCCCcCEEECcCCcCCCCCcc--ccC
Confidence 456777777788887777765544 33 3477777777777666421 235555555555555544332 234
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccC-CCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+|+.|++++|.++.. .+..+..+++|++|++++|.+++..+. .+. .+++|+.|+|++|.+++.+. ...+++|
T Consensus 121 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L 193 (487)
T 3oja_A 121 GKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYDVKG---QVVFAKL 193 (487)
T ss_dssp SCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSCCCEEEC---CCCCTTC
T ss_pred CCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCCccccccc---cccCCCC
Confidence 455555555555431 122224445555555555555443322 222 34455555555555544322 2234455
Q ss_pred CeEecCCCccccccCCCCC---chhhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016362 285 EQLYLNKNNLNRIYYPNND---TIHELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~---~~l~~~~~~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
+.|+|++|.|+++ |... ..++.+++++|.+.+ +..+++|+.|++++|.+.....+..+..++.|+.|+++
T Consensus 194 ~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 194 KTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEECCCCCCCCC--CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5555555555443 1111 122334444444333 45679999999999999843344678889999999886
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.5e-21 Score=192.97 Aligned_cols=246 Identities=16% Similarity=0.139 Sum_probs=166.0
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016362 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
|..+..+++|++|++++|.+..++.. .+++|++|++++|.+..+ .+|..+.++++|++|++++|++... .+..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l 166 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQL--DLLPV 166 (562)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTT--TTGGG
T ss_pred HHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccC--chhhh
Confidence 45688999999999999999977665 469999999999999863 2346789999999999999988642 22222
Q ss_pred CCc--cEEEeecccC-----------------------------------------------------------------
Q 016362 205 KSI--RILVLNCTGV----------------------------------------------------------------- 217 (390)
Q Consensus 205 ~~L--~~L~L~~n~l----------------------------------------------------------------- 217 (390)
++| ++|++++|.+
T Consensus 167 ~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh
Confidence 222 4444444333
Q ss_pred ------------------------------------------CH-------------------------------HHHHH
Q 016362 218 ------------------------------------------NW-------------------------------MQVEI 224 (390)
Q Consensus 218 ------------------------------------------~~-------------------------------~~~~~ 224 (390)
++ ..+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 11 00111
Q ss_pred HH---------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCCCC
Q 016362 225 LK---------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQIR 282 (390)
Q Consensus 225 ~~---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~ 282 (390)
.+ ..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.+.+ ..+..++
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ---GCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT---TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhh---hhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 10 3445666677777766654333 566777777777777777765432 3466777
Q ss_pred CcCeEecCCCcccc-ccC--CCCCchhhhhhcccccccCC--CCC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016362 283 SLEQLYLNKNNLNR-IYY--PNNDTIHELVSAHESHEESY--LPF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 283 ~L~~L~L~~n~l~~-~~~--~~~~~~l~~~~~~~~~~~~~--~~l-~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
+|++|++++|.+++ +.. ......++.+++++|.+.+. ..+ ++|++|+|++|+|+.++ ..+..+++|++|+++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP--KDVTHLQALQELNVA 481 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC--TTTTSSCCCSEEECC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC--hhhcCCCCCCEEECC
Confidence 88888888888776 311 11124456667777766442 223 58888888888888765 345588899999999
Q ss_pred CCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 357 ENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 357 ~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|.++. +|.. .++.+++|+.|+++.
T Consensus 482 ~N~l~~-----l~~~-~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 482 SNQLKS-----VPDG-VFDRLTSLQYIWLHD 506 (562)
T ss_dssp SSCCCC-----CCTT-STTTCTTCCCEECCS
T ss_pred CCCCCC-----CCHH-HHhcCCCCCEEEecC
Confidence 998885 4433 367788888888764
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.5e-23 Score=206.72 Aligned_cols=240 Identities=17% Similarity=0.159 Sum_probs=189.8
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|+.++++++.+...+ .+.. +++|++|++++|.+. .+|. + .+++|+.|++++|+..... .+..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~-~~~L~~L~l~~n~l~---~lp~-~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPK-HFKWQSLSIIRCQLK---QFPT-L-DLPFLKSLTLTMNKGSISF-KKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCT-TCCCSEEEEESCCCS---SCCC-C-CCSSCCEEEEESCSSCEEC-CCCCCTTC
T ss_pred cccCCCCCEEEecCccchhhh-hccc-cccCCEEEcccccCc---cccc-C-CCCccceeeccCCcCccch-hhccCCCC
Confidence 788899999999999988776 4544 489999999999985 4553 4 8899999999999654333 56788999
Q ss_pred cEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 208 RILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 208 ~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
++|++++|.++... .+..+..+++|++|++++|.+++.+. .+..+++|+.|++++|.+.+..+...+..+++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh----hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 99999999876421 13445788999999999999887653 57788899999999998887765456778899999
Q ss_pred EecCCCccccccCCCC---CchhhhhhcccccccC------CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016362 287 LYLNKNNLNRIYYPNN---DTIHELVSAHESHEES------YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~---~~~l~~~~~~~~~~~~------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
|++++|.++... |.. ...++.+++++|.+.+ +..+++|++|+|++|++++.+ +..+..+++|++|++++
T Consensus 429 L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 429 LDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred EECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCC
Confidence 999999888754 332 2445667777776543 567899999999999999863 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|++.+ ..|.. ++.+++|++|+++.
T Consensus 507 N~l~~----~~~~~--~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 507 NNLLF----LDSSH--YNQLYSLSTLDCSF 530 (606)
T ss_dssp SCCSC----EEGGG--TTTCTTCCEEECTT
T ss_pred CcCCC----cCHHH--ccCCCcCCEEECCC
Confidence 99985 34665 88999999999875
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.1e-22 Score=187.03 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=129.0
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCcc
Q 016362 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIR 208 (390)
Q Consensus 130 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~ 208 (390)
.|+.....+++++.++.++..+. ++|++|++++|.+..+. +..+..+++|++|++++|+++...+ .+..+++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 44444455666666666654332 46666777766666421 2245666667777777666665544 366666677
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC-CCCchhhhhcCCCCCcCeE
Q 016362 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC-IAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L 287 (390)
+|++++|.++. ..+..+..+++|++|++++|.++.++.. ..+..+++|+.|++++|. +...++ ..+..+++|++|
T Consensus 104 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L 179 (353)
T 2z80_A 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEEL 179 (353)
T ss_dssp EEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEE
T ss_pred EEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEE
Confidence 77776666653 2233346666677777776666655430 135566667777776663 444433 445666667777
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC---
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG--- 364 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--- 364 (390)
++++|.++++. |.. +..+++|++|++++|.++..+. ..+..+++|++|++++|.+.+..
T Consensus 180 ~l~~n~l~~~~-~~~----------------l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 180 EIDASDLQSYE-PKS----------------LKSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp EEEETTCCEEC-TTT----------------TTTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred ECCCCCcCccC-HHH----------------HhccccCCeecCCCCccccchh-hhhhhcccccEEECCCCccccccccc
Confidence 77766666653 222 3444555555555555544331 12233455555555555554321
Q ss_pred ------------------------CcchhhhhhhhhcCCceEecCcc
Q 016362 365 ------------------------RGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 365 ------------------------~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
...+|.. ++.+++|+.|+++.
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~--l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSR 286 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHH--HHTCTTCCEEECCS
T ss_pred cccccccchhhccccccccccCcchhhhHHH--HhcccCCCEEECCC
Confidence 1124444 67888888888864
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.1e-21 Score=192.83 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=112.4
Q ss_pred CCCEEEccCCCCCCccCCC-CCCCCccEEEeecccCCHHHHHH--HHhcCCcccEEeccCCCccccCCCCCCccCCCCCc
Q 016362 183 ALAVLNLSNNLMSKEVTGL-PQLKSIRILVLNCTGVNWMQVEI--LKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259 (390)
Q Consensus 183 ~L~~L~ls~n~l~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 259 (390)
+|+.|++++|.+...+..+ ..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+++.+.. ...+..+++|
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT-GEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH-HHHGGGCTTC
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc-hhhhhcCCCC
Confidence 3444444444443222222 24566666666666666432221 134556666666666666554210 0124556666
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCC-CCCCCCEEeCCCCCCCCc
Q 016362 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYL-PFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~i~~~ 338 (390)
+.|++++|+++..+. .+..+++|++|++++|.++.+. ......++.+++++|.++++. .+++|++|+|++|+|+.+
T Consensus 390 ~~L~Ls~N~l~~lp~--~~~~~~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i 466 (549)
T 2z81_A 390 TSLDISRNTFHPMPD--SCQWPEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL 466 (549)
T ss_dssp CEEECTTCCCCCCCS--CCCCCTTCCEEECTTSCCSCCC-TTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC
T ss_pred CEEECCCCCCccCCh--hhcccccccEEECCCCCccccc-chhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcC
Confidence 677777776665542 4555666777777777666542 111234566666666666543 577888888888888766
Q ss_pred hhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 339 ASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 339 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+. ...+++|++|++++|.+++ ..+.. ++.+++|+.|+++.
T Consensus 467 p~---~~~l~~L~~L~Ls~N~l~~----~~~~~--~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 467 PD---ASLFPVLLVMKISRNQLKS----VPDGI--FDRLTSLQKIWLHT 506 (549)
T ss_dssp CC---GGGCTTCCEEECCSSCCCC----CCTTG--GGGCTTCCEEECCS
T ss_pred CC---cccCccCCEEecCCCccCC----cCHHH--HhcCcccCEEEecC
Confidence 52 3457788888888888874 23333 67788888887764
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=9.5e-22 Score=183.08 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=178.5
Q ss_pred HHHHhcc--ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CC
Q 016362 125 QDKFSKF--EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL 201 (390)
Q Consensus 125 ~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~ 201 (390)
+..+..+ +.++.++++++.+.+..+.+.. +++|++|++++|.+.. ..++..+..+++|++|++++|.++...+ .+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCC-CBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhcc-CCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 4455666 8899999999999988776665 5999999999999875 2378889999999999999999876544 57
Q ss_pred CCCCCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCC-CccEEEcCCC--CCCCchhhh
Q 016362 202 PQLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFD-NLQLLNLEDN--CIAEWSEIL 276 (390)
Q Consensus 202 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~-~L~~L~L~~n--~l~~~~~~~ 276 (390)
..+++|++|++++| .+++..++..+..+++|++|++++| .+++... +..+..++ +|++|++++| .+++..-..
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 78999999999999 7887678888899999999999999 8876321 12466788 9999999999 455322114
Q ss_pred hcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC-CCCCchhhhhccCCCCCcEEE
Q 016362 277 KLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN-MIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 277 ~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~L~ 354 (390)
.+..+++|++|++++|. +++...+ . +..+++|++|++++| .+++. .+..+..+++|++|+
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~-~----------------l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQ-E----------------FFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQ 278 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGG-G----------------GGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCCEEE
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHH-H----------------HhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCCEEe
Confidence 55679999999999999 6665423 2 567799999999999 45443 335678899999999
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCce
Q 016362 355 LSENPVSDPGRGGISRFAIIARLGKIK 381 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~ 381 (390)
+++| +.+. .+... ...++.|+
T Consensus 279 l~~~-i~~~---~~~~l--~~~l~~L~ 299 (336)
T 2ast_B 279 VFGI-VPDG---TLQLL--KEALPHLQ 299 (336)
T ss_dssp CTTS-SCTT---CHHHH--HHHSTTSE
T ss_pred ccCc-cCHH---HHHHH--HhhCcceE
Confidence 9999 6542 23321 34577776
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.5e-21 Score=176.37 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=167.9
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016362 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
+.++..+++..+.+.... .... +++|+.|++++|.+..+. .+..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV-TQNE-LNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHH-HTTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccc-cccc-ccceeeeeeCCCCccccc----ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEE
Confidence 334455667776665543 3444 599999999999998743 368899999999999999864 578899999999
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016362 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++++|.++. ..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+++.++ ..+..+++|++|+++
T Consensus 91 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 91 ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLS 165 (272)
T ss_dssp ECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred ECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECC
Confidence 999999884 3344457899999999999999987664 57889999999999999998875 567889999999999
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+|+++++. +.. +..+++|++|++++|++++.+. ..+..+++|+.|++++|++...+
T Consensus 166 ~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 166 YNQLQSLP-EGV----------------FDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SSCCCCCC-TTT----------------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCcCccC-HHH----------------hcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999873 222 5678999999999999998753 56889999999999999998644
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.7e-21 Score=194.78 Aligned_cols=213 Identities=17% Similarity=0.127 Sum_probs=118.5
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016362 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
+++|+.|++++|.++.++. .+++|++|++++|.++.+ |. .+++|+.|++++|+++..+.. +++|++|
T Consensus 80 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l---~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L 146 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL---PA---LPSGLCKLWIFGNQLTSLPVL---PPGLQEL 146 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCC---CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred CCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCC---CC---CCCCcCEEECCCCCCCcCCCC---CCCCCEE
Confidence 3444444444444443332 224444444444444432 11 334444444444444432221 2445555
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016362 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++++|.++. ++ ..+++|+.|++++|.++.++ ..+++|+.|++++|.+++++. .+++|+.|+++
T Consensus 147 ~Ls~N~l~~--l~---~~~~~L~~L~L~~N~l~~l~-------~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~ 209 (622)
T 3g06_A 147 SVSDNQLAS--LP---ALPSELCKLWAYNNQLTSLP-------MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAY 209 (622)
T ss_dssp ECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECC
T ss_pred ECcCCcCCC--cC---CccCCCCEEECCCCCCCCCc-------ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECc
Confidence 555554442 11 12334445555554444432 123677788888887776543 23567777777
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCC-CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchh
Q 016362 291 KNNLNRIYYPNNDTIHELVSAHESHEESYL-PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGIS 369 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 369 (390)
+|.++.+ |.....++.+++++|.+.++. .+++|++|+|++|+|+.++. .+++|+.|+|++|.|+. +|
T Consensus 210 ~N~l~~l--~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~-----lp 277 (622)
T 3g06_A 210 NNRLTSL--PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTR-----LP 277 (622)
T ss_dssp SSCCSSC--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCS-----CC
T ss_pred CCccccc--CCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCc-----CC
Confidence 7777665 445556666777777666542 35777777777777776652 46777788888887763 55
Q ss_pred hhhhhhhcCCceEecCcc
Q 016362 370 RFAIIARLGKIKILNGSE 387 (390)
Q Consensus 370 ~~~~i~~l~~L~~Ln~s~ 387 (390)
.. +..+++|+.|+++.
T Consensus 278 ~~--l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 278 ES--LIHLSSETTVNLEG 293 (622)
T ss_dssp GG--GGGSCTTCEEECCS
T ss_pred HH--HhhccccCEEEecC
Confidence 55 67778888877764
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=8.9e-22 Score=178.26 Aligned_cols=218 Identities=19% Similarity=0.189 Sum_probs=171.7
Q ss_pred EeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeec
Q 016362 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNC 214 (390)
Q Consensus 136 ~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~ 214 (390)
.++..+..+..++..+. ++|++|++++|.+..+. +..+..+++|++|++++|++....+ .+..+++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCCCCC---CCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 45566666766665442 68999999999998632 3467889999999999999987766 588999999999999
Q ss_pred ccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcc
Q 016362 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 215 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 294 (390)
|.++.. .+..+..+++|++|++++|.+++.... .+..+++|++|++++|.+++..-...+..+++|++|++++|++
T Consensus 86 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 86 NPIQSL-ALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccCcc-ChhhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 998752 334457899999999999999987654 5788999999999999998743115678899999999999999
Q ss_pred ccccCCCCCchhhhhhcccccccCCCCCCCCC----EEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh
Q 016362 295 NRIYYPNNDTIHELVSAHESHEESYLPFQNLC----CLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR 370 (390)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~----~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 370 (390)
+++. +.. +..+++|+ +|++++|.+++++. ......+|++|++++|.++. ++.
T Consensus 162 ~~~~-~~~----------------~~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~-----~~~ 217 (276)
T 2z62_A 162 QSIY-CTD----------------LRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLKELALDTNQLKS-----VPD 217 (276)
T ss_dssp CEEC-GGG----------------GHHHHTCTTCCEEEECCSSCCCEECT--TSSCSCCEEEEECCSSCCSC-----CCT
T ss_pred CcCC-HHH----------------hhhhhhccccceeeecCCCcccccCc--cccCCCcccEEECCCCceee-----cCH
Confidence 9873 222 33334454 89999999998752 34445689999999999985 333
Q ss_pred hhhhhhcCCceEecCcc
Q 016362 371 FAIIARLGKIKILNGSE 387 (390)
Q Consensus 371 ~~~i~~l~~L~~Ln~s~ 387 (390)
. +++++++|+.|+++.
T Consensus 218 ~-~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 218 G-IFDRLTSLQKIWLHT 233 (276)
T ss_dssp T-TTTTCCSCCEEECCS
T ss_pred h-HhcccccccEEEccC
Confidence 2 367899999999874
No 71
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.86 E-value=4.1e-22 Score=145.65 Aligned_cols=74 Identities=39% Similarity=0.719 Sum_probs=66.1
Q ss_pred CCCCCCCEEEeC--CCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
..++||+||.+. +...++|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++..+
T Consensus 10 ~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~~v~~g 85 (95)
T 1lpl_A 10 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG 85 (95)
T ss_dssp HTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTSEEEECGGGEEES
T ss_pred hcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeC-CCEEEEEcHHHceEC
Confidence 468999999996 21136799999999999999999999999999999999999999995 699999999998665
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=174.28 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=164.3
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
.+.+.++++++.++. +|..+ .++|+.|++++|+++...+ .+..+++|++|++++|.++. ..+..+..+++|++
T Consensus 16 ~~~~~l~~~~~~l~~---ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA---IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTSCCSS---CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCE
T ss_pred CCCCEEEccCCCCCc---cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCE
Confidence 467899999999985 44322 2579999999999988776 68899999999999999874 23334477899999
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccc
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~ 314 (390)
|++++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|++|+|++|.++.+. ...
T Consensus 90 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~----------- 152 (270)
T 2o6q_A 90 LWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLP--KGV----------- 152 (270)
T ss_dssp EECCSSCCCCCCTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTT-----------
T ss_pred EECCCCcCCcCCHh---HcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCccC--HhH-----------
Confidence 99999999987754 57888999999999999998876 56789999999999999999873 321
Q ss_pred cccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 315 HEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 315 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+..+++|++|+|++|++++++. ..+..+++|++|++++|++.. ++.. .++.+++|+.|+++.
T Consensus 153 ----~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-----~~~~-~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 153 ----FDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKR-----VPEG-AFDSLEKLKMLQLQE 214 (270)
T ss_dssp ----TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSC-----CCTT-TTTTCTTCCEEECCS
T ss_pred ----ccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCc-----CCHH-HhccccCCCEEEecC
Confidence 5678999999999999998753 568889999999999999985 3322 267899999999864
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.4e-21 Score=186.78 Aligned_cols=208 Identities=17% Similarity=0.163 Sum_probs=141.8
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+.++++|+.|++++|.+.+.+ .+.. +++|++|++++|.++++ + +..+++|++|++++|++++. .+..+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~-l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEK-LTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNL--DVTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGG-CTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCC--CCTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcc-cCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCcee--ecCCCCcC
Confidence 345677777778777777664 4444 47778888887777763 2 56777788888877777764 36677777
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++|++++|.++. ++ +..+++|++|++++|.++++. +..+++|+.|++++|...+.. .+..+++|++|
T Consensus 109 ~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 175 (457)
T 3bz5_A 109 TYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTL 175 (457)
T ss_dssp CEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEE
T ss_pred CEEECCCCcCCe--ec--CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCccccc---ccccCCcCCEE
Confidence 888887777764 22 467777788888777777642 456677778888777433221 25667777788
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccC--CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEES--YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++++|+++++. ......++.++++.|.+.+ +..+++|++|++++|++++++ +..+++|+.|++++|++..
T Consensus 176 ~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 176 DCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCC
Confidence 88887777763 2233445666666666554 345677778888888777753 5667777888888877765
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.6e-21 Score=196.63 Aligned_cols=115 Identities=21% Similarity=0.197 Sum_probs=70.2
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.|.++++|++|+|++|.|..+++..+..+++|++|+|++|.++.+. +..|.++++|++|++++|+++...+ .+..++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 4566667777777777766666544444567777777777666421 2345666777777777776665554 366666
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcc
Q 016362 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 243 (390)
+|++|++++|.+.....+..+..+++|++|++++|.++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 67777766666653233344455666666666666543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.7e-21 Score=177.92 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=168.1
Q ss_pred ecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccC
Q 016362 138 ALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217 (390)
Q Consensus 138 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l 217 (390)
.+..+.+.+.. .... +++|++|++++|.+..+ + .+..+++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQAD-LDGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEE-CHHH-HHTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCcee-cHHH-cCCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 44444444422 3334 58999999999999864 3 47889999999999999987766 88999999999999998
Q ss_pred CHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016362 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 218 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
+. ++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.++ +..+++|++|++++|.++++
T Consensus 98 ~~--~~-~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 98 KN--VS-AIAGLQSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp SC--CG-GGTTCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred CC--ch-hhcCCCCCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCC
Confidence 85 33 3578999999999999998764 37889999999999999998764 77899999999999999987
Q ss_pred cCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhc
Q 016362 298 YYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL 377 (390)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l 377 (390)
. . +..+++|++|++++|++++++. +..+++|++|++++|++.+ ++. ++.+
T Consensus 167 ~--~-----------------l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~-----~~~---l~~l 216 (308)
T 1h6u_A 167 T--P-----------------LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISD-----VSP---LANT 216 (308)
T ss_dssp G--G-----------------GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCB-----CGG---GTTC
T ss_pred h--h-----------------hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCc-----ccc---ccCC
Confidence 3 2 4578999999999999999763 7889999999999999985 342 6889
Q ss_pred CCceEecCcc
Q 016362 378 GKIKILNGSE 387 (390)
Q Consensus 378 ~~L~~Ln~s~ 387 (390)
++|+.|+++.
T Consensus 217 ~~L~~L~l~~ 226 (308)
T 1h6u_A 217 SNLFIVTLTN 226 (308)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEccC
Confidence 9999998764
No 76
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.86 E-value=9.5e-22 Score=143.10 Aligned_cols=74 Identities=36% Similarity=0.619 Sum_probs=67.4
Q ss_pred CCCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
.|..++||+||.+.+. ++|||||+|++++.++.|+|||||+|.|||||+++|++||+|. +++|.|+++.++...
T Consensus 15 ~~~~~~vG~rV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 15 FLGDFVVGERVWVNGV--KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECP-ALQGIFTRPSKLTRQ 88 (95)
T ss_dssp SCCSCCTTCEEEGGGS--CEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCC-TTTEEEECGGGCCSS
T ss_pred hhhcCcCCCEEEECCc--eEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccC-CCeEEEEcHHHCccC
Confidence 3567999999999764 4699999999999999999999999999999999999999998 589999999988654
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=211.00 Aligned_cols=248 Identities=19% Similarity=0.125 Sum_probs=145.7
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHH--HhcCCCCCEEEccCCCCCCccC--CC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAF--GEQLPALAVLNLSNNLMSKEVT--GL 201 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--l~~l~~L~~L~ls~n~l~~~~~--~~ 201 (390)
..+.++++|+.|+|++|.+....+..+..+++|++|+|++|.+.+ .++.. +..+++|++|++++|.+.+..+ .+
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 144 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS--CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc--ccccCccccccCCCCEEECCCCcccccccchhH
Confidence 445556666666666666555544333334666666666665553 22222 4555666666666665554432 35
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcC--CcccEEeccCCCccccCCCCCCccCCCC------CccEEEcCCCCCCCch
Q 016362 202 PQLKSIRILVLNCTGVNWMQVEILKHSL--PALEELHLMGNSISEITPVSSPIVQGFD------NLQLLNLEDNCIAEWS 273 (390)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~l~------~L~~L~L~~n~l~~~~ 273 (390)
..+++|++|++++|.++... +..+..+ ++|+.|+++.|.+.+..+. .+..+. .|+.|++++|.+....
T Consensus 145 ~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 145 GKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSV---DWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp GTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCC---CCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred hhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCcccccccc---chhhcCCccccCceeEEecCCCcCchhH
Confidence 55666666666665554211 1111111 4566666666655543322 233333 3889999988665322
Q ss_pred hh-----------------------------------hhcCC--CCCcCeEecCCCccccccCCCC---Cchhhhhhccc
Q 016362 274 EI-----------------------------------LKLCQ--IRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHE 313 (390)
Q Consensus 274 ~~-----------------------------------~~l~~--l~~L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~ 313 (390)
+. ..+.. .++|+.|++++|.++.+. +.. ...++.++++.
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAY 299 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEES
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCC
Confidence 10 01111 267899999999888764 322 23456677777
Q ss_pred ccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 314 SHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 314 ~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.+.+ +..+++|++|+|++|++++.. ...+..+++|++|++++|.+.... +.. +..+++|+.|+++.
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~----~~~--~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQ----DQT--FKFLEKLQTLDLRD 371 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCCCCCCC----SSC--SCSCCCCCEEEEET
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCCCCccC----hhh--hcCCCCCCEEECCC
Confidence 76543 456788888999988888763 357788888999999998886422 222 67788999988875
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.8e-21 Score=176.26 Aligned_cols=195 Identities=22% Similarity=0.232 Sum_probs=163.8
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCccc
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALE 233 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 233 (390)
++++++++++++.++. +|..+ .++++.|++++|.++...+ .+..+++|++|++++|.++. ++.. ..+++|+
T Consensus 9 l~~l~~l~~~~~~l~~---ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA---LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSS---CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCC
T ss_pred cCCccEEECCCCCCCc---CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCC
Confidence 4899999999999985 44332 3689999999999987765 68899999999999999874 2222 6889999
Q ss_pred EEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccc
Q 016362 234 ELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (390)
Q Consensus 234 ~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~ 313 (390)
+|++++|.++.++. .+..+++|+.|+|++|+++..++ ..+..+++|++|+|++|+|+.+ +...
T Consensus 81 ~L~Ls~N~l~~l~~----~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~--~~~~---------- 143 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTL--PPGL---------- 143 (290)
T ss_dssp EEECCSSCCSSCCC----CTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCC--CTTT----------
T ss_pred EEECCCCcCCcCch----hhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCcc--Chhh----------
Confidence 99999999986653 47788999999999999998875 5788999999999999999987 3321
Q ss_pred ccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 314 SHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+..+++|++|+|++|+|+.++. ..+..+++|+.|++++|.+.. +|.. +..+++|+.|+++.
T Consensus 144 -----~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~-----ip~~--~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 144 -----LTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT-----IPKG--FFGSHLLPFAFLHG 204 (290)
T ss_dssp -----TTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC-----CCTT--TTTTCCCSEEECCS
T ss_pred -----cccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCc-----cChh--hcccccCCeEEeCC
Confidence 5678999999999999998753 567889999999999999985 6666 66778899888763
No 79
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=1.9e-21 Score=138.56 Aligned_cols=71 Identities=39% Similarity=0.730 Sum_probs=65.0
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
...++||+||.+.+. +.|||||+|++++.++.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.
T Consensus 5 ~~~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~-~~~G~Fv~~~kv~ 75 (84)
T 2cp3_A 5 SSGLRLGDRVLVGGT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCP-PKFGLFAPIHKVI 75 (84)
T ss_dssp SCSCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCC-TTTEEEEEGGGEE
T ss_pred ccccccCCEEEECCC--CeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEEcHHHeE
Confidence 367999999999764 4699999999999999999999999999999999999999997 5899999998774
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.4e-22 Score=189.24 Aligned_cols=224 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred HHHHHhccccccEeecCCcccCCCCc----chhhhcC-cccEEECCCCcCCC--hHHHHHHHhcC-CCCCEEEccCCCCC
Q 016362 124 IQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVT-NLKELDLTGNLLSD--WKDIGAFGEQL-PALAVLNLSNNLMS 195 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~L~~n~l~~--~~~~~~~l~~l-~~L~~L~ls~n~l~ 195 (390)
+|..+...++|++|++++|.++..+. .....++ +|++|+|++|.+.+ ...+...+... ++|++|++++|+++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 44445555556666666666666554 2222234 66666666666654 22233333333 66666666666665
Q ss_pred CccCC-----CCCC-CCccEEEeecccCCHHHHHHH---Hhc-CCcccEEeccCCCccccCCC-CCCccCCCC-CccEEE
Q 016362 196 KEVTG-----LPQL-KSIRILVLNCTGVNWMQVEIL---KHS-LPALEELHLMGNSISEITPV-SSPIVQGFD-NLQLLN 263 (390)
Q Consensus 196 ~~~~~-----~~~l-~~L~~L~L~~n~l~~~~~~~~---~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~-~L~~L~ 263 (390)
...+. +..+ ++|++|++++|.++......+ +.. ..+|++|++++|.+++.... ++..+..++ +|+.|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 44332 2333 566666666666653322222 223 24666666666666643211 001122333 666666
Q ss_pred cCCCCCCCchhh---hhcCCC-CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCc
Q 016362 264 LEDNCIAEWSEI---LKLCQI-RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 264 L~~n~l~~~~~~---~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~i~~~ 338 (390)
|++|.+++.... ..+..+ ++|++|+|++|.|++.+....... +.. .++|++|+|++|.|++.
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-------------l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-------------FSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------HHHSCTTCCEEECCSSCCCCC
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-------------HhcCCCCceEEECcCCCCCcH
Confidence 666666544321 123344 366666666666665321100000 111 24566666666666553
Q ss_pred hh---hhhccCCCCCcEEEccCCCC
Q 016362 339 AS---IDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 339 ~~---~~~l~~l~~L~~L~l~~n~l 360 (390)
+. ...+..+++|++|++++|.+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCCc
Confidence 22 12234455566666666653
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=207.24 Aligned_cols=250 Identities=18% Similarity=0.113 Sum_probs=166.2
Q ss_pred HHHHhccccccEeecCCccc-CCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-C--
Q 016362 125 QDKFSKFEELTSAALPYLGV-SSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-G-- 200 (390)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~i-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~-- 200 (390)
+..+.++++|+.|++++|.. ..+++..+..+++|++|+|++|.+.. ..|..+..+++|++|++++|.+.+..+ .
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--LHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--ECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--cCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 34567788888888887743 33334333445788888888888775 335667778888888888887776433 2
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCC--CCccEEEcCCCCCCCchhhhhc
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGF--DNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l 278 (390)
+..+++|++|++++|.+....++..+..+++|++|++++|.+++..+. .+..+ ++|+.|+|+.|.+.+..+ ..+
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~---~l~~l~~~~L~~L~L~~n~l~~~~~-~~~ 194 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKTLSFFSLAANSLYSRVS-VDW 194 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG---GGHHHHHCSSCCCEECCSBSCCCCC-CCC
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH---HcccccCCccceEECCCCccccccc-cch
Confidence 677888888888888776433333457778888888888877766443 44444 678888888887776443 234
Q ss_pred CCCCC------cCeEecCCCccccccCCCC----------------------------------------Cchhhhhhcc
Q 016362 279 CQIRS------LEQLYLNKNNLNRIYYPNN----------------------------------------DTIHELVSAH 312 (390)
Q Consensus 279 ~~l~~------L~~L~L~~n~l~~~~~~~~----------------------------------------~~~l~~~~~~ 312 (390)
+.+++ |+.|++++|.++....... ...++.++++
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 44443 8999999987654221100 0123445555
Q ss_pred cccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 313 ESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 313 ~~~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.|.+.+ +..+++|++|+|++|++++.. ...+..+++|++|++++|.+... .+.. ++.+++|+.|+++.
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~----~~~~--~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGEL----YSSN--FYGLPKVAYIDLQK 347 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCC----CSCS--CSSCTTCCEEECCS
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCcc----CHHH--hcCCCCCCEEECCC
Confidence 555433 456788888888888888763 35677888888888888888642 2333 67888888888874
No 82
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=1.8e-21 Score=141.60 Aligned_cols=70 Identities=40% Similarity=0.742 Sum_probs=64.7
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.
T Consensus 15 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~-~~~G~Fv~~~kv~ 84 (95)
T 2cp0_A 15 LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICP-PKQGLFASVSKIS 84 (95)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCS-SSCEEEECGGGEE
T ss_pred cCCCCCCEEEECCC--CeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecC-CCcEEEEcHHHee
Confidence 46999999999764 4699999999999999999999999999999999999999997 5999999999874
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.8e-22 Score=189.56 Aligned_cols=246 Identities=17% Similarity=0.145 Sum_probs=178.0
Q ss_pred eEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCC---c-ch------hhhcCcccEEECCCCcCCC--h
Q 016362 104 MYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPG---A-NI------GTIVTNLKELDLTGNLLSD--W 171 (390)
Q Consensus 104 ~~~~~~~~~~~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~---~-~~------~~~~~~L~~L~L~~n~l~~--~ 171 (390)
+..+...... +...+...++..+..+++|+.|++++|.+.... + .+ ...+++|++|+|++|.+.. .
T Consensus 34 L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 34 VKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred ccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 3444555543 333444556777889999999999998665432 2 22 1346999999999999986 3
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCCccC-CC----CCC---------CCccEEEeecccCCHHHHH---HHHhcCCcccE
Q 016362 172 KDIGAFGEQLPALAVLNLSNNLMSKEVT-GL----PQL---------KSIRILVLNCTGVNWMQVE---ILKHSLPALEE 234 (390)
Q Consensus 172 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~----~~l---------~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~ 234 (390)
..++..+..+++|++|++++|.++...+ .+ ..+ ++|++|++++|.++...++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3578889999999999999999864332 22 233 8999999999999744455 45578999999
Q ss_pred EeccCCCccccC--CCCCCccCCCCCccEEEcCCCCCCCch--hh-hhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016362 235 LHLMGNSISEIT--PVSSPIVQGFDNLQLLNLEDNCIAEWS--EI-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 235 L~l~~n~l~~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~ 309 (390)
|++++|.++... ...+..+..+++|+.|+|++|.++... .+ ..+..+++|++|+|++|.+++.+.......+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-- 269 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS-- 269 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH--
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh--
Confidence 999999998321 001114678899999999999986321 11 45788999999999999998763211111100
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCc---hhhhhc-cCCCCCcEEEccCCCCCC
Q 016362 310 SAHESHEESYLPFQNLCCLLLGNNMIEDL---ASIDSL-DSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~---~~~~~l-~~l~~L~~L~l~~n~l~~ 362 (390)
...+++|++|+|++|.|++. ..+..+ ..+++|++|++++|+++.
T Consensus 270 ---------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 270 ---------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ---------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ---------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 13479999999999999982 122445 568999999999999986
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=8.9e-23 Score=198.28 Aligned_cols=280 Identities=19% Similarity=0.112 Sum_probs=179.0
Q ss_pred eEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCCc-chhhh----cCcccEEECCCCcCCCh--HHHHH
Q 016362 104 MYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTI----VTNLKELDLTGNLLSDW--KDIGA 176 (390)
Q Consensus 104 ~~~~~~~~~~~~i~~~g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~----~~~L~~L~L~~n~l~~~--~~~~~ 176 (390)
+..+...... +...|...++..+..+++|++|++++|.+..... .+... .++|++|++++|.++.. ..++.
T Consensus 87 L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 87 IQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred eeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 4444444443 3344556788889999999999999998875443 23221 35799999999988762 35677
Q ss_pred HHhcCCCCCEEEccCCCCCCccC-CCC-----CCCCccEEEeecccCCHHH---HHHHHhcCCcccEEeccCCCccccCC
Q 016362 177 FGEQLPALAVLNLSNNLMSKEVT-GLP-----QLKSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITP 247 (390)
Q Consensus 177 ~l~~l~~L~~L~ls~n~l~~~~~-~~~-----~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~ 247 (390)
.+..+++|++|++++|.+..... .+. ..++|++|++++|.++... ++..+..+++|++|++++|.+++...
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 78888999999999988764322 222 3568888888888887532 45556778888888888888765421
Q ss_pred C-C-CCccCCCCCccEEEcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCC-------CCCchhhhhhccccc
Q 016362 248 V-S-SPIVQGFDNLQLLNLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYP-------NNDTIHELVSAHESH 315 (390)
Q Consensus 248 ~-~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~~l~~~~~~~~~ 315 (390)
. + +.....+++|+.|++++|.++.... ...+..+++|++|++++|.+++.... .....++.+++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 0 0 0022346788888888888876321 03355678888888888887653211 111234555666665
Q ss_pred ccCC---------CCCCCCCEEeCCCCCCCCchhh---hhccC-CCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016362 316 EESY---------LPFQNLCCLLLGNNMIEDLASI---DSLDS-FPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 316 ~~~~---------~~l~~L~~L~Ls~N~i~~~~~~---~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
+... ..+++|++|++++|.+++.... +.+.. +++|++|++++|.+++.....++.. +..+++|+.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~ 402 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT--LLANHSLRE 402 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH--HHHCCCCCE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH--HHhCCCccE
Confidence 4432 2357788888888877764221 12222 6678888888887763222235554 667777777
Q ss_pred ecCcc
Q 016362 383 LNGSE 387 (390)
Q Consensus 383 Ln~s~ 387 (390)
|+++.
T Consensus 403 L~l~~ 407 (461)
T 1z7x_W 403 LDLSN 407 (461)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 77764
No 85
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.85 E-value=2.4e-21 Score=142.52 Aligned_cols=73 Identities=32% Similarity=0.614 Sum_probs=66.3
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
+..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++...
T Consensus 23 ~~~~~VG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~ 95 (102)
T 1whh_A 23 GAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCA-PRHGVFAPASRIQRI 95 (102)
T ss_dssp CCSSCTTSEEEETTT--EEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCC-TTTEEEECGGGEEEC
T ss_pred cccCcCCCEEEECCC--cEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCcEEEecHHHeEEC
Confidence 367999999999764 4699999999999999999999999999999999999999997 589999999987543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2e-21 Score=177.31 Aligned_cols=211 Identities=22% Similarity=0.242 Sum_probs=159.0
Q ss_pred EeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecc
Q 016362 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT 215 (390)
Q Consensus 136 ~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n 215 (390)
.+.+....+.+.. .... +++|++|++++|.+..+. .+..+++|++|++++|+++...+ +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNE-LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSEE-CHHH-HHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHhcCCCccccc-chhh-cCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 3445555554432 2333 488999999999888642 36788999999999998887665 888899999999999
Q ss_pred cCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccc
Q 016362 216 GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 295 (390)
.++. ++. +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.+ .+..+++|++|++++|.++
T Consensus 101 ~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~-----~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 101 KVKD--LSS-LKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCC--GGG-GTTCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC
T ss_pred cCCC--Chh-hccCCCCCEEECCCCcCCCCh-----hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccc
Confidence 8874 333 478889999999999988752 4677889999999999998863 4678899999999999998
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhh
Q 016362 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIA 375 (390)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~ 375 (390)
++. . +..+++|++|++++|.|++++ .+..+++|+.|++++|++......... .+.
T Consensus 170 ~~~--~-----------------l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~~~~~---~l~ 224 (291)
T 1h6t_A 170 DIV--P-----------------LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQS---NLV 224 (291)
T ss_dssp CCG--G-----------------GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCEECCS---EEE
T ss_pred cch--h-----------------hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCcccccc---ccE
Confidence 873 2 356789999999999999874 478899999999999998763321111 134
Q ss_pred hcCCceEecCcccC
Q 016362 376 RLGKIKILNGSEVN 389 (390)
Q Consensus 376 ~l~~L~~Ln~s~i~ 389 (390)
.++.++.+++..|+
T Consensus 225 ~~~~l~~l~~~~i~ 238 (291)
T 1h6t_A 225 VPNTVKNTDGSLVT 238 (291)
T ss_dssp EECCCBCTTSCBCC
T ss_pred EcceEECCCCCCcC
Confidence 45667777766553
No 87
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.85 E-value=3.1e-21 Score=139.16 Aligned_cols=71 Identities=38% Similarity=0.709 Sum_probs=64.8
Q ss_pred CCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
+++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..+
T Consensus 1 ~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-p~~G~Fv~~~kv~~~ 71 (90)
T 2e3h_A 1 ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 71 (90)
T ss_dssp CCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCC-TTCEEEEEGGGEEET
T ss_pred CCcCCCEEEECCC--CEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecC-CCcEEEEcHHHeEEC
Confidence 4789999999764 4699999999999999999999999999999999999999997 589999999987543
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=5.2e-22 Score=192.89 Aligned_cols=263 Identities=17% Similarity=0.102 Sum_probs=154.9
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCc-chhhhcC----cccEEECCCCcCCCh--HHHHHHHhcCCCCCEEEccCCC
Q 016362 121 KDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVT----NLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 121 ~~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~----~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~ls~n~ 193 (390)
...++..+..+++|++|++++|.+.+... .+...++ +|++|++++|.+... ..++..+..+++|++|++++|.
T Consensus 45 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 45 CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 34678888889999999999998876443 4444445 699999999988752 3678888899999999999998
Q ss_pred CCCccC-C-----CCCCCCccEEEeecccCCHH---HHHHHHhcCCcccEEeccCCCccccCCC-CCCcc-CCCCCccEE
Q 016362 194 MSKEVT-G-----LPQLKSIRILVLNCTGVNWM---QVEILKHSLPALEELHLMGNSISEITPV-SSPIV-QGFDNLQLL 262 (390)
Q Consensus 194 l~~~~~-~-----~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~l~~L~~L 262 (390)
+..... . ....++|++|++++|.++.. .++..+..+++|++|++++|.+++.... +...+ ...++|+.|
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 764322 1 22356788888888877643 2344556677888888888877653221 00000 123467777
Q ss_pred EcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccC-------CCCCchhhhhhcccccccC---------CCCCC
Q 016362 263 NLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYY-------PNNDTIHELVSAHESHEES---------YLPFQ 323 (390)
Q Consensus 263 ~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~-------~~~~~~l~~~~~~~~~~~~---------~~~l~ 323 (390)
++++|.++.... ...+..+++|++|++++|.+++.+. ......++.+++++|.+.. +..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 777777665321 0234456667777777776655321 0012234444555544333 11256
Q ss_pred CCCEEeCCCCCCCCchhhhhc----c-CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 324 NLCCLLLGNNMIEDLASIDSL----D-SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 324 ~L~~L~Ls~N~i~~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+|++|++++|.+++.. +..+ . ..++|++|++++|.+++.....++.. +..+++|+.|++|
T Consensus 285 ~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 285 SLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLLELQIS 349 (461)
T ss_dssp TCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH--HHHCSSCCEEECC
T ss_pred CcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH--HhhCCCccEEEcc
Confidence 6666666666665421 1111 1 22466666666666553221123333 4555666666655
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=195.93 Aligned_cols=188 Identities=21% Similarity=0.215 Sum_probs=121.6
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (390)
+++|++|++++|.+......+..+..+++|++|++++|.+....+.+..+++|++|++++|.+........+..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 46677777777766643222455666777777777777666555456666777777777766543212223456677777
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCC-chhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccc
Q 016362 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE-WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (390)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~ 313 (390)
|++++|.+++..+. .+..+++|+.|++++|.+++ ..+ ..+..+++|++|++++|+++++. |..
T Consensus 426 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~-~~~----------- 489 (570)
T 2z63_A 426 LDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLS-PTA----------- 489 (570)
T ss_dssp EECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEEC-TTT-----------
T ss_pred EeCcCCcccccchh---hhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCC-hhh-----------
Confidence 77777776665443 45666777777777776652 122 34566777777777777776653 322
Q ss_pred ccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 314 SHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+..+++|++|++++|++++.+ ...+..+++|+.|++++|++..++
T Consensus 490 -----~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 490 -----FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp -----TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred -----hhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence 566788888888888888764 356777888888888888887544
No 90
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=3.1e-21 Score=142.84 Aligned_cols=77 Identities=22% Similarity=0.491 Sum_probs=67.4
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEe-cCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCCc
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDW-DYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISL 84 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~-d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~~s~ 84 (390)
..++||+||.+.++..+.|||||+|++++.++.|+|||| |++.|||||+++|++||+|. +++|.|+++.++.....|
T Consensus 16 ~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~-p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 16 HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECCTT
T ss_pred cccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecC-CCcEEEEcHHHceecccc
Confidence 679999999997532356999999999999999999999 66669999999999999997 599999999988665444
No 91
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.84 E-value=2.5e-21 Score=139.93 Aligned_cols=72 Identities=32% Similarity=0.599 Sum_probs=65.5
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
+..++||+||.+.+. .+.|||||+|++++.++.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.
T Consensus 10 ~~~~~vG~rV~V~~~-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-~~~G~Fvr~~~v~ 81 (91)
T 1whk_A 10 TVKLHEGSQVLLTSS-NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCK-PNYGVLVRPSRVT 81 (91)
T ss_dssp CCCCCSSCEEEESSS-CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCS-TTCCCEECGGGEE
T ss_pred CccccCCCEEEECCC-CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecC-CCeEEEEchHHcE
Confidence 467999999999752 25699999999999999999999999999999999999999997 6999999999874
No 92
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.84 E-value=3.5e-21 Score=140.16 Aligned_cols=72 Identities=35% Similarity=0.658 Sum_probs=65.2
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~ 80 (390)
..++||+||.+.+. .++|||||+|++++.+|.|+|||||++.|||||+++|++||+|. +++|.|+++.++..
T Consensus 11 ~~~~vG~rv~v~~~-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (93)
T 1txq_A 11 RPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 82 (93)
T ss_dssp CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCC-TTCEEEECGGGEEE
T ss_pred ccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHeEE
Confidence 57999999999653 25699999999999999999999999999999999999999997 59999999998753
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=192.50 Aligned_cols=244 Identities=16% Similarity=0.216 Sum_probs=183.9
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCC
Q 016362 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 203 (390)
++..+..+++|+.|+++++.+...+..+.. + +|++|++++|.+.. +|. ..+++|+.|++++|.+....+. ..
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n~~~~---l~~--~~l~~L~~L~l~~n~~~~~~~~-~~ 345 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNCKFGQ---FPT--LKLKSLKRLTFTSNKGGNAFSE-VD 345 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESCBCSS---CCB--CBCSSCCEEEEESCBSCCBCCC-CB
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccCcccc---cCc--ccccccCEEeCcCCcccccccc-cc
Confidence 455677889999999999999877665544 3 89999999998884 333 4788899999998887655444 67
Q ss_pred CCCccEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016362 204 LKSIRILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
+++|++|++++|.++... .+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+.+..+...+..++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE----EEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc----cccccCCCCEEEccCCccccccchhhhhcCC
Confidence 888999999988876321 13344678889999999888877654 2667788888888888877655434567788
Q ss_pred CcCeEecCCCccccccCCCC---Cchhhhhhccccccc------CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEE
Q 016362 283 SLEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEE------SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDI 353 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~---~~~l~~~~~~~~~~~------~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L 353 (390)
+|++|++++|.+++.. +.. ...++.+++++|.+. .+..+++|++|++++|++++.. +..+..+++|++|
T Consensus 422 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 499 (570)
T 2z63_A 422 NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVL 499 (570)
T ss_dssp TCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEE
Confidence 8888888888877653 222 234566666666543 4677899999999999999873 3678899999999
Q ss_pred EccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 354 RLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 354 ~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++++|.+++. .+.. ++++++|+.|+++.
T Consensus 500 ~l~~n~l~~~----~~~~--~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 500 NMASNQLKSV----PDGI--FDRLTSLQKIWLHT 527 (570)
T ss_dssp ECCSSCCSCC----CTTT--TTTCTTCCEEECCS
T ss_pred eCCCCcCCCC----CHHH--hhcccCCcEEEecC
Confidence 9999999852 3333 78899999999875
No 94
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.84 E-value=5e-21 Score=140.80 Aligned_cols=71 Identities=35% Similarity=0.681 Sum_probs=65.0
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~ 80 (390)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||++.|||||+++|++||+|. +++|.|++++++..
T Consensus 23 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~kv~~ 93 (102)
T 1whj_A 23 LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCA-PKYGIFAPLSKISK 93 (102)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGEEE
T ss_pred hcCcCCCEEEECCC--CEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccC-CCeEEEEeHHHccc
Confidence 46999999999764 4699999999999999999999999999999999999999997 58999999998743
No 95
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=5.2e-21 Score=145.02 Aligned_cols=71 Identities=31% Similarity=0.629 Sum_probs=65.7
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
+..++||+||.+.+. ++|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.
T Consensus 29 ~~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVr~~kv~ 99 (122)
T 2coz_A 29 LFDFHIGDRVLIGNV--QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK-EKHGIFAPPQKIS 99 (122)
T ss_dssp CSSCCTTEEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCC-SSCEEEECGGGEE
T ss_pred cccCcCCCEEEECCC--cEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecC-CCcEEEecHHHCc
Confidence 367999999999764 5699999999999999999999999999999999999999998 5899999999875
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.3e-20 Score=168.14 Aligned_cols=178 Identities=21% Similarity=0.219 Sum_probs=91.6
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
..+.++++++.+..++..+. ++++.|++++|.+..+ .+..+..+++|++|++++|.++...+ .+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATL--SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCcc--CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45566666666666655432 4666666666666652 22345566666666666666655444 244555555555
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.+ +..++. .+..+++|+.|+|++|.++..++ ..+..+++|++|+|++
T Consensus 90 L~~n~l-------------------------~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 90 LANNQL-------------------------ASLPLG---VFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNT 140 (251)
T ss_dssp CTTSCC-------------------------CCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCCcc-------------------------cccChh---HhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcC
Confidence 555544 433322 33444555555555555554443 3344455555555555
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 292 n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|+|+.+. +.. +..+++|++|+|++|++++++. ..+..+++|+.|++++|++..
T Consensus 141 N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 141 NQLQSIP-AGA----------------FDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCC-TTT----------------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccC-HHH----------------cCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeC
Confidence 5555442 111 3344555555555555554421 344455555555555555543
No 97
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=5.1e-21 Score=140.20 Aligned_cols=72 Identities=38% Similarity=0.678 Sum_probs=65.4
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~ 80 (390)
|..++||+||.+.+. ++|||||+|++++.++.|+|||||++.|||||+++|++||+|. +++|.|+++.++..
T Consensus 21 ~~~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~ 92 (100)
T 2cow_A 21 PEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN-PGYGLLVRPSRVRR 92 (100)
T ss_dssp CSSCCTTCEEECSSS--CEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSC-TTCCEEECGGGCEE
T ss_pred CccccCCCEEEECCC--cEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEecHHHeeE
Confidence 456899999999764 5599999999999999999999999999999999999999996 59999999998743
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.8e-21 Score=169.67 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=103.7
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCc-CCChHHHHHHHhcCCCCCEEEccC-CCCCCccC-CCCCCCCccE
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSN-NLMSKEVT-GLPQLKSIRI 209 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~-~~~~l~~L~~ 209 (390)
.|+.|++++|.+..+++..+..+++|++|++++|. +..+. +..+..+++|++|++++ |+++...+ .+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 56666666666666555333334666666666664 54321 12455566666666665 66655443 3555666666
Q ss_pred EEeecccCCHHHHHHHHhcCCccc---EEeccCC-CccccCCCCCCccCCCCCcc-EEEcCCCCCCCchhhhhcCCCCCc
Q 016362 210 LVLNCTGVNWMQVEILKHSLPALE---ELHLMGN-SISEITPVSSPIVQGFDNLQ-LLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
|++++|.++. ++. +..+++|+ +|++++| .++.+++. .+..+++|+ .|++++|.++..+. ..+.. ++|
T Consensus 110 L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L 181 (239)
T 2xwt_C 110 LGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKL 181 (239)
T ss_dssp EEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEE
T ss_pred EeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccCH-hhcCC-CCC
Confidence 6666665553 222 34455555 6666666 55555433 345555566 66666666554443 22222 556
Q ss_pred CeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 285 EQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 285 ~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
++|++++|+ ++.+. +.. +..+ ++|++|++++|+++.++. ..+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~-~~~----------------~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVID-KDA----------------FGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEEC-TTT----------------TTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCC-HHH----------------hhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 666666663 55542 111 3444 556666666666655431 14555556655554
No 99
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.83 E-value=6.4e-21 Score=147.53 Aligned_cols=73 Identities=36% Similarity=0.689 Sum_probs=66.5
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
+..++||+||.+.+. ++|||||+|++++.+|.|+|||||++.|||||+++|++||+|. +++|.|+++.++...
T Consensus 62 ~~~l~VG~RV~V~G~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 62 VDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCCCTTCEEEETTS--CEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCC-TTTEEEECGGGEESS
T ss_pred hhcCcCCCEEEECCC--cEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCcEEEechHHeeec
Confidence 367999999999864 4699999999999999999999999999999999999999997 589999999987654
No 100
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.83 E-value=8.2e-21 Score=142.83 Aligned_cols=74 Identities=39% Similarity=0.702 Sum_probs=65.8
Q ss_pred CCCCCCCEEEeC--CCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
..+.||+||.+. ++..++|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|.|+++.++..+
T Consensus 31 ~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~g 106 (113)
T 1whg_A 31 SAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQ-AKYGAFVKPSAVTVG 106 (113)
T ss_dssp TTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCC-TTTEEEECGGGEEEE
T ss_pred hcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeC-CCeEEEECHHHeEEC
Confidence 568999999995 32236799999999999999999999999999999999999999997 589999999988544
No 101
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.83 E-value=1.1e-20 Score=141.56 Aligned_cols=71 Identities=35% Similarity=0.675 Sum_probs=64.7
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~ 79 (390)
..++||+||.+.+. .++|||||+|++++.+|.|+|||||++.|||||+++|++||+|. +++|.|+++.++.
T Consensus 32 ~~l~VG~RV~V~~~-g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFVr~~~v~ 102 (112)
T 2coy_A 32 RPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQ 102 (112)
T ss_dssp CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTTEEEECGGGEE
T ss_pred ccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecC-CCeEEEEchHHeE
Confidence 47999999999653 25699999999999999999999999999999999999999997 5999999999874
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=179.94 Aligned_cols=222 Identities=17% Similarity=0.094 Sum_probs=147.8
Q ss_pred ccEeecCCcccCCCCc----chhhhcCcccEEECCCCcCCChHHHHHHH--hcCCCCCEEEccCCCCCCccC-----CCC
Q 016362 134 LTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLSDWKDIGAFG--EQLPALAVLNLSNNLMSKEVT-----GLP 202 (390)
Q Consensus 134 L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~-----~~~ 202 (390)
++.+.+.++.++.... .... +++|++|++++|.+.+ ..|..+ ..+++|++|++++|.+.+..+ .+.
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4555666555443211 1122 3668888888888775 334444 677888888888888775433 234
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcccc---CCCCCCccCCCCCccEEEcCCCCCCCchhh--hh
Q 016362 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEI---TPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LK 277 (390)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~ 277 (390)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+. ... ..+..+++|++|+|++|.++..+.. ..
T Consensus 143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 67788888888887764 2333446777888888888876542 111 1345677888888888888765542 12
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016362 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
++.+++|++|+|++|.+++.. |.... ....+++|++|+|++|+|+.++ ..+ .++|++|++++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~-p~~~~-------------~~~~~~~L~~L~Ls~N~l~~lp--~~~--~~~L~~L~Ls~ 281 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATV-NPSAP-------------RCMWSSALNSLNLSFAGLEQVP--KGL--PAKLRVLDLSS 281 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCC-CSCCS-------------SCCCCTTCCCEECCSSCCCSCC--SCC--CSCCSCEECCS
T ss_pred HhcCCCCCEEECCCCCCCccc-hhhHH-------------hccCcCcCCEEECCCCCCCchh--hhh--cCCCCEEECCC
Confidence 356778888888888887764 32210 0222379999999999999775 334 38999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.|+. +|. ...+++|+.|+++.
T Consensus 282 N~l~~-----~~~---~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 282 NRLNR-----APQ---PDELPEVDNLTLDG 303 (310)
T ss_dssp CCCCS-----CCC---TTSCCCCSCEECSS
T ss_pred CcCCC-----Cch---hhhCCCccEEECcC
Confidence 99985 333 46789999999874
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.7e-20 Score=180.28 Aligned_cols=229 Identities=17% Similarity=0.153 Sum_probs=120.3
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+++|++|++++|.+.+.+.. .++|++|++++|.+.. +| .+..+++|++|++++|++++.+. . .++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~---l~-~~~~l~~L~~L~l~~N~l~~l~~-~--~~~ 216 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE---LP-ELQNLPFLTAIYADNNSLKKLPD-L--PLS 216 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSSCCC-C--CTT
T ss_pred ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCc---Cc-cccCCCCCCEEECCCCcCCcCCC-C--cCc
Confidence 366777777777777777665432 2467777777777664 23 35667777777777776664322 1 136
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhh----------
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL---------- 276 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---------- 276 (390)
|++|++++|.+. .++. +..+++|++|++++|.+++++.. +++|+.|++++|.+++.+...
T Consensus 217 L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCCSSCCSC-------CTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred ccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcCCccccc-------ccccCEEECCCCcccccCcccCcCCEEECcC
Confidence 666666666655 2332 35666666666666666654321 244555555555554433200
Q ss_pred ----hc-CCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCchhhhhccCCCCC
Q 016362 277 ----KL-CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDLASIDSLDSFPKL 350 (390)
Q Consensus 277 ----~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L 350 (390)
.+ .-.++|+.|++++|.++++ +.....++.+++++|.+.++.. +++|++|++++|+++.++. .+++|
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i--~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~-----~l~~L 359 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE-----LPQNL 359 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEE--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-----CCTTC
T ss_pred CccCcccCcCCcCCEEECcCCcCCcc--cCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccc-----hhhhc
Confidence 00 0013444444444444443 2222344555566665555332 4667777777777766542 36778
Q ss_pred cEEEccCCCCCCCCCcchhhhhhhhhc-------------CCceEecCcc
Q 016362 351 MDIRLSENPVSDPGRGGISRFAIIARL-------------GKIKILNGSE 387 (390)
Q Consensus 351 ~~L~l~~n~l~~~~~~~~~~~~~i~~l-------------~~L~~Ln~s~ 387 (390)
++|++++|++.... .+|.. ++.+ ++|+.|+++.
T Consensus 360 ~~L~L~~N~l~~l~--~ip~~--l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 360 KQLHVEYNPLREFP--DIPES--VEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp CEEECCSSCCSSCC--CCCTT--CCEEECCC-------------------
T ss_pred cEEECCCCCCCcCC--CChHH--HHhhhhcccccccccccCcCCEEECCC
Confidence 88888888876411 24444 4445 6788887764
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=6.5e-20 Score=163.65 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=105.0
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-
Q 016362 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 121 ~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~- 199 (390)
+..+|..+. +.++.|++++|.+....+.....+++|++|+|++|.+..+ .+..+..+++|++|++++|+++..++
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL--SAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc--CHhHhccCCcCCEEECCCCcccccChh
Confidence 444554333 5799999999999998885445569999999999999973 34667899999999999999987765
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
.+..+++|++|++++|.++. ..+..+..+++|++|++++|.++++++. .+..+++|+.|+|++|.+++.++ ..+.
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 176 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPH-GAFD 176 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTT
T ss_pred HhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCH-HHHh
Confidence 35666666666666666652 1122224445555555555555544332 34444555555555555544433 3344
Q ss_pred CCCCcCeEecCCCccc
Q 016362 280 QIRSLEQLYLNKNNLN 295 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~ 295 (390)
.+++|+.|+|++|.++
T Consensus 177 ~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 177 RLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSCCBC
T ss_pred CCCCCCEEEeeCCcee
Confidence 4445555555555443
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.4e-19 Score=181.07 Aligned_cols=209 Identities=18% Similarity=0.180 Sum_probs=154.9
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
++|+.|++++|.++.++. .+++|++|+|++|.++. +|. .+++|++|++++|.++..+. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS---LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC---CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc---CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEE
Confidence 577788888887776654 34778888888887774 333 66778888888887776544 456788888
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.++. ++ ..+++|++|++++|.+++++. .+.+|+.|++++|.++..+ ..+++|+.|++++
T Consensus 128 L~~N~l~~--lp---~~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 128 IFGNQLTS--LP---VLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSD 190 (622)
T ss_dssp CCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCS
T ss_pred CCCCCCCc--CC---CCCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCC
Confidence 88887763 22 234778888888887776532 2356788888888887755 3468899999999
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh
Q 016362 292 NNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR 370 (390)
Q Consensus 292 n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 370 (390)
|.|+++ |.....++.+++++|.+..+.. +++|++|+|++|+|++++ ..+++|+.|++++|.|+. +|.
T Consensus 191 N~l~~l--~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~-----lp~ 258 (622)
T 3g06_A 191 NQLASL--PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTS-----LPM 258 (622)
T ss_dssp SCCSCC--CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC-----CCC
T ss_pred CCCCCC--CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCc-----CCc
Confidence 999986 6666777888888887776554 478999999999999865 456899999999999985 444
Q ss_pred hhhhhhcCCceEecCcc
Q 016362 371 FAIIARLGKIKILNGSE 387 (390)
Q Consensus 371 ~~~i~~l~~L~~Ln~s~ 387 (390)
.+++|+.|+++.
T Consensus 259 -----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 259 -----LPSGLLSLSVYR 270 (622)
T ss_dssp -----CCTTCCEEECCS
T ss_pred -----ccccCcEEeCCC
Confidence 467888888764
No 106
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=2.6e-20 Score=148.50 Aligned_cols=72 Identities=38% Similarity=0.701 Sum_probs=66.2
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~~~~~ 81 (390)
..++||+||.+.+. ++|||||+|++++.+|.|+|||||++.|||||+++|++||+|. +++|.|+++.++..+
T Consensus 37 ~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVr~~kV~~~ 108 (172)
T 2cp6_A 37 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 108 (172)
T ss_dssp SCCCSSCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGCEEC
T ss_pred ccCccCCEEEECCC--ceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeC-CCeEEEechHHeEEC
Confidence 57899999999764 5699999999999999999999999999999999999999997 589999999988654
No 107
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=2.1e-20 Score=137.22 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=63.9
Q ss_pred CCCCCCCEEEeCCCc---eeeEEEEEeeecC---CCCCeEEEEEecCC---CCCCCCEECCEEEEecCCCCcceeeeecc
Q 016362 7 ESYKLGQRVHSANDA---RRIGTVKYVGEVQ---GYSGTWLGVDWDYG---NGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~---~~~~tv~~~g~~~---~~~~~w~Gv~~d~~---~gk~~g~~~g~~yf~~~~~~~~sf~~~~~ 77 (390)
..++||+||.+.... .++|||||+|+++ +.++.|+|||||+| .|||||+++|+|||+|. +++|.|+++.+
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~-~~~G~Fv~~~~ 84 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALDK 84 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGGG
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecC-CCeEEEEcHHH
Confidence 679999999994211 3679999999998 68999999999999 79999999999999995 69999999998
Q ss_pred CCC
Q 016362 78 LSP 80 (390)
Q Consensus 78 ~~~ 80 (390)
+..
T Consensus 85 v~~ 87 (95)
T 1whl_A 85 LEL 87 (95)
T ss_dssp EEE
T ss_pred eEE
Confidence 753
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.9e-20 Score=186.98 Aligned_cols=169 Identities=23% Similarity=0.280 Sum_probs=78.9
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (390)
++|+.|++++|.+..+. .+..+++|+.|+|++|++....+ +..+++|+.|+|++|.+.. ++ .+..+++|++|
T Consensus 43 ~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSL 114 (605)
T ss_dssp TTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEE
Confidence 44445555554444321 23444555555555554443333 4444455555555544442 12 12444455555
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccc
Q 016362 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESH 315 (390)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~ 315 (390)
+|++|.++++. .+..+++|+.|+|++|.+++.. .+..+++|+.|+|++|.|+++..
T Consensus 115 ~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~---------------- 170 (605)
T 1m9s_A 115 SLEHNGISDIN-----GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP---------------- 170 (605)
T ss_dssp ECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG----------------
T ss_pred EecCCCCCCCc-----cccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh----------------
Confidence 55555544431 2344455555555555555432 24445555555555555544421
Q ss_pred ccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 316 EESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 316 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|+|++|+|++++ .+..+++|+.|+|++|++..
T Consensus 171 ---l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 ---LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEEC
T ss_pred ---hccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcC
Confidence 233455555555555555432 34445555555555555543
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.2e-20 Score=167.22 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=162.1
Q ss_pred cCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC-CCCccC-CCCCCCCccEEEeec-ccCCHH
Q 016362 144 VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVT-GLPQLKSIRILVLNC-TGVNWM 220 (390)
Q Consensus 144 i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~-~~~~l~~L~~L~L~~-n~l~~~ 220 (390)
+..++. + .++|++|++++|.++.+. +..+..+++|++|++++|+ ++...+ .+..+++|++|++++ |.++.
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~- 95 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY- 95 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-
T ss_pred ccccCC-C---CCcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-
Confidence 555544 2 368999999999998632 2467899999999999997 877766 688999999999998 88874
Q ss_pred HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCcc---EEEcCCC-CCCCchhhhhcCCCCCcC-eEecCCCccc
Q 016362 221 QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQ---LLNLEDN-CIAEWSEILKLCQIRSLE-QLYLNKNNLN 295 (390)
Q Consensus 221 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~l~~l~~L~-~L~L~~n~l~ 295 (390)
..+..+..+++|++|++++|.+++++. +..+++|+ .|++++| .++..++ ..+..+++|+ +|++++|+++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD-----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC-----CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc-----cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence 223345788999999999999988542 56667776 9999999 9988775 5688999999 9999999999
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCC-CCCchhhhhccCC-CCCcEEEccCCCCCCCCCcchhhhhh
Q 016362 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNM-IEDLASIDSLDSF-PKLMDIRLSENPVSDPGRGGISRFAI 373 (390)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~ 373 (390)
.+ |... +.. ++|++|++++|+ ++.++ ...+..+ ++|+.|++++|+++. +|..
T Consensus 170 ~i--~~~~---------------~~~-~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~-----l~~~-- 223 (239)
T 2xwt_C 170 SV--QGYA---------------FNG-TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTA-----LPSK-- 223 (239)
T ss_dssp EE--CTTT---------------TTT-CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCC-----CCCT--
T ss_pred cc--CHhh---------------cCC-CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCcccc-----CChh--
Confidence 77 4431 333 799999999995 99874 3578888 999999999999985 4442
Q ss_pred hhhcCCceEecCcc
Q 016362 374 IARLGKIKILNGSE 387 (390)
Q Consensus 374 i~~l~~L~~Ln~s~ 387 (390)
.+++|+.|+++.
T Consensus 224 --~~~~L~~L~l~~ 235 (239)
T 2xwt_C 224 --GLEHLKELIARN 235 (239)
T ss_dssp --TCTTCSEEECTT
T ss_pred --HhccCceeeccC
Confidence 577888887764
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=3.7e-19 Score=172.32 Aligned_cols=206 Identities=20% Similarity=0.219 Sum_probs=109.9
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEe
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 212 (390)
+|++|++++|.+.+.+ ++.. +++|++|++++|.+.++.. ..++|++|++++|.+.. .+.+..+++|++|++
T Consensus 174 ~L~~L~L~~n~l~~l~-~~~~-l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~l 244 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-ELQN-LPFLTAIYADNNSLKKLPD------LPLSLESIVAGNNILEE-LPELQNLPFLTTIYA 244 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTT-CTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEEC
T ss_pred cccEEECcCCcCCcCc-cccC-CCCCCEEECCCCcCCcCCC------CcCcccEEECcCCcCCc-ccccCCCCCCCEEEC
Confidence 5566666666665543 3333 3566666666665553211 12355555555555552 234555555555555
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCC-------------cc-CCCCCccEEEcCCCCCCCchhhhhc
Q 016362 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSP-------------IV-QGFDNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 213 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------~l-~~l~~L~~L~L~~n~l~~~~~~~~l 278 (390)
++|.++. ++ ..+++|++|++++|.+++++.. +. .+ ...++|+.|++++|.+++.+
T Consensus 245 ~~N~l~~--l~---~~~~~L~~L~l~~N~l~~l~~~-~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~----- 313 (454)
T 1jl5_A 245 DNNLLKT--LP---DLPPSLEALNVRDNYLTDLPEL-PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC----- 313 (454)
T ss_dssp CSSCCSS--CC---SCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC-----
T ss_pred CCCcCCc--cc---ccccccCEEECCCCcccccCcc-cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc-----
Confidence 5555542 11 1224455555555554443211 00 00 00135555666655555432
Q ss_pred CCC-CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCC-CCCCCCEEeCCCCCCCCch-hhhhccCC--------
Q 016362 279 CQI-RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYL-PFQNLCCLLLGNNMIEDLA-SIDSLDSF-------- 347 (390)
Q Consensus 279 ~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~-~~~~l~~l-------- 347 (390)
.+ ++|++|++++|+++++ |.....++.+++++|.+..+. .+++|++|++++|++++++ .+..+..+
T Consensus 314 -~~~~~L~~L~Ls~N~l~~l--p~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 314 -DLPPSLEELNVSNNKLIEL--PALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp -CCCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred -CCcCcCCEEECCCCccccc--cccCCcCCEEECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 23 5899999999999986 776778888899988776643 3689999999999999853 22455555
Q ss_pred -----CCCcEEEccCCCCC
Q 016362 348 -----PKLMDIRLSENPVS 361 (390)
Q Consensus 348 -----~~L~~L~l~~n~l~ 361 (390)
++|++|++++|++.
T Consensus 391 i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp -------------------
T ss_pred cccccCcCCEEECCCCcCC
Confidence 88999999999998
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=8.6e-21 Score=178.64 Aligned_cols=236 Identities=18% Similarity=0.150 Sum_probs=168.6
Q ss_pred eecCCcccCCCCcchhhhcCcccEEECCCCcCCCh--HHHHHHHhcCC-CCCEEEccCCCCCCccC-CCCCC-----CCc
Q 016362 137 AALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDW--KDIGAFGEQLP-ALAVLNLSNNLMSKEVT-GLPQL-----KSI 207 (390)
Q Consensus 137 L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~l~-~L~~L~ls~n~l~~~~~-~~~~l-----~~L 207 (390)
+.++.+.+++..+.+....++|++|++++|.+.+. ..+...+..++ +|++|++++|+++...+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 56788888887777766656799999999999863 33447788899 99999999999987644 34433 899
Q ss_pred cEEEeecccCCHHH---HHHHHhcC-CcccEEeccCCCccccCCC-CCCccCC-CCCccEEEcCCCCCCCchh--h-hhc
Q 016362 208 RILVLNCTGVNWMQ---VEILKHSL-PALEELHLMGNSISEITPV-SSPIVQG-FDNLQLLNLEDNCIAEWSE--I-LKL 278 (390)
Q Consensus 208 ~~L~L~~n~l~~~~---~~~~~~~l-~~L~~L~l~~n~l~~~~~~-~~~~l~~-l~~L~~L~L~~n~l~~~~~--~-~~l 278 (390)
++|++++|.++... +...+..+ ++|++|++++|.+++.... +...+.. .++|++|+|++|.+++... + ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999987433 33344555 8999999999999876542 0112334 3689999999999985332 1 334
Q ss_pred CCCC-CcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCC-CCCCEEeCCCCCCCCchh---hhhccC-CCCCcE
Q 016362 279 CQIR-SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNNMIEDLAS---IDSLDS-FPKLMD 352 (390)
Q Consensus 279 ~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~i~~~~~---~~~l~~-l~~L~~ 352 (390)
..++ +|++|+|++|.+++......... +..+ ++|++|+|++|.|++... ...+.. .++|++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKF-------------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHH-------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHH-------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 5555 99999999999988642111111 2345 599999999999997321 134444 469999
Q ss_pred EEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 353 IRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 353 L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|+|++|++.+.....+.. .+..+++|++|+++.
T Consensus 230 L~Ls~N~l~~~~~~~l~~--~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKL--LKDSLKHLQTVYLDY 262 (362)
T ss_dssp EECCSSCCCCCCHHHHHH--TTTTTTTCSEEEEEH
T ss_pred EECcCCCCCcHHHHHHHH--HHhcCCCccEEEecc
Confidence 999999998744322333 256677788877654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.4e-19 Score=177.32 Aligned_cols=195 Identities=22% Similarity=0.254 Sum_probs=155.1
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
.+|+.|++++|.+++++..+ +++|++|+|++|.++. +| ..+++|++|++++|++++.+. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS---LP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc---cc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 48999999999999877655 3799999999999995 45 568999999999999998544 554 999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.++. ++. .+++|++|++++|.+++++. .+++|+.|+|++|.+++.+. +. ++|+.|+|++
T Consensus 127 Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 127 VDNNQLTM--LPE---LPALLEYINADNNQLTMLPE-------LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVST 189 (571)
T ss_dssp CCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCS
T ss_pred CCCCcCCC--CCC---cCccccEEeCCCCccCcCCC-------cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcC
Confidence 99999985 443 68899999999999997542 46899999999999999664 44 8999999999
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhh
Q 016362 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRF 371 (390)
Q Consensus 292 n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 371 (390)
|+|+.+ |.....+ ....+.|++|+|++|+|+.++ ..+..+++|+.|+|++|+++. .+|..
T Consensus 190 N~L~~l--p~~~~~L------------~~~~~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~~----~~p~~ 249 (571)
T 3cvr_A 190 NLLESL--PAVPVRN------------HHSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSS----RIRES 249 (571)
T ss_dssp SCCSSC--CCCC--------------------CCEEEECCSSCCCCCC--GGGGGSCTTEEEECCSSSCCH----HHHHH
T ss_pred CCCCch--hhHHHhh------------hcccccceEEecCCCcceecC--HHHhcCCCCCEEEeeCCcCCC----cCHHH
Confidence 999977 4421000 122344499999999999876 467779999999999999984 45554
Q ss_pred hhhhhc
Q 016362 372 AIIARL 377 (390)
Q Consensus 372 ~~i~~l 377 (390)
+..+
T Consensus 250 --l~~l 253 (571)
T 3cvr_A 250 --LSQQ 253 (571)
T ss_dssp --HHHH
T ss_pred --HHHh
Confidence 4444
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=8.3e-20 Score=169.90 Aligned_cols=224 Identities=15% Similarity=0.125 Sum_probs=162.3
Q ss_pred ccccEeecCCcccCCCCcchhhhc--CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-cC-CCCCCCCc
Q 016362 132 EELTSAALPYLGVSSPGANIGTIV--TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-VT-GLPQLKSI 207 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~-~~~~l~~L 207 (390)
..++.++++++.+.. .....+ ++++.|++++|.+.+ ..+ .+..+++|++|++++|.+... .+ .+..+++|
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~--~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQ--PLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECS--CCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccc--cch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 347888888887762 222223 789999999998876 222 245788999999999987653 33 46788999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCCCccEEEcCCC-CCCCchhhhhcCCCC-Cc
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFDNLQLLNLEDN-CIAEWSEILKLCQIR-SL 284 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~-~L 284 (390)
++|++++|.++.. .+..+..+++|++|++++| .+++... +..+..+++|++|++++| .+++......+..++ +|
T Consensus 121 ~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 121 QNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFAL--QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp SEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHH--HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHH--HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 9999999988864 4444577899999999998 5664211 113567888999999999 887642224566788 99
Q ss_pred CeEecCCC--ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCC-CCCchhhhhccCCCCCcEEEccCCC-C
Q 016362 285 EQLYLNKN--NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNM-IEDLASIDSLDSFPKLMDIRLSENP-V 360 (390)
Q Consensus 285 ~~L~L~~n--~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~l~~n~-l 360 (390)
++|++++| .+++...+.. +..+++|++|++++|. +++. .+..+..+++|++|++++|. +
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~----------------~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTL----------------VRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHH----------------HHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTC
T ss_pred CEEEeCCCcccCCHHHHHHH----------------HhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCCCC
Confidence 99999998 4554322332 4568999999999998 6654 44678889999999999996 3
Q ss_pred CCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 361 SDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 361 ~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+ ..+ . .++++++|+.|+++.
T Consensus 261 ~~---~~~-~--~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 261 IP---ETL-L--ELGEIPTLKTLQVFG 281 (336)
T ss_dssp CG---GGG-G--GGGGCTTCCEEECTT
T ss_pred CH---HHH-H--HHhcCCCCCEEeccC
Confidence 22 112 2 278899999999875
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=4e-20 Score=166.16 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=89.7
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016362 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
+.++..++++.+.+.+.. .+.. +++|++|++++|.+..+ + .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~-l~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKE-LSGVQNFNGDNSNIQSL---A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHH-HTTCSEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc-chhh-cCcCcEEECcCCCcccc---h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 444555566666655543 2333 36666666666666542 2 34556666666666666554433 4444455555
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016362 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++ ++|.+++.+.. .. ++|+.|+|++|.+++.+ .+..+++|+.|+++
T Consensus 91 ~L-------------------------~~N~l~~l~~~-----~~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 91 SV-------------------------NRNRLKNLNGI-----PS-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIR 136 (263)
T ss_dssp EC-------------------------CSSCCSCCTTC-----CC-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECT
T ss_pred EC-------------------------CCCccCCcCcc-----cc-CcccEEEccCCccCCCh---hhcCcccccEEECC
Confidence 54 44444443221 11 55556666666555533 24555566666666
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+|+++++ +. +..+++|++|++++|+|+++ ..+..+++|+.|++++|++..
T Consensus 137 ~N~i~~~--~~-----------------l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 137 NNKLKSI--VM-----------------LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSCCCBC--GG-----------------GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCcCCCC--hH-----------------HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence 6665554 21 34455666666666666554 245555666666666665554
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6e-19 Score=160.90 Aligned_cols=174 Identities=28% Similarity=0.365 Sum_probs=149.4
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016362 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
..+++|+.|++++|.+...+ .+.. +++|++|++++|.+.++. . +..+++|++|++++|+++.. +.+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~-l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENKVKDL-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccCh-hHhc-CCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCcCCCC-hhhccCCCCC
Confidence 46788999999999998875 3444 699999999999999743 3 88999999999999999864 4588999999
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.++ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~--~~-~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISD--IN-GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCC--CG-GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCcCCC--Ch-hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCccccchh---hcCCCccCEEE
Confidence 99999999985 33 3478999999999999998862 57889999999999999999764 78899999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 339 (390)
+++|.++++ +. +..+++|+.|++++|+++..+
T Consensus 185 L~~N~i~~l--~~-----------------l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 185 LSKNHISDL--RA-----------------LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCSSCCCBC--GG-----------------GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCCcCCCC--hh-----------------hccCCCCCEEECcCCcccCCc
Confidence 999999987 32 567899999999999998754
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.8e-18 Score=152.11 Aligned_cols=178 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016362 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L 264 (390)
+.++++++++...+..+. ++|++|++++|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|+.|+|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChh---hcccCCCcCEEEC
Confidence 445555555554433332 556666666666553 2233335667777777777777666543 4677788888888
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016362 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l 344 (390)
++|.++..++ ..+..+++|++|+|++|+|+.+ |.. +..+++|++|+|++|+|+.++. ..+
T Consensus 96 s~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~l--p~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~ 155 (229)
T 3e6j_A 96 GTNQLTVLPS-AVFDRLVHLKELFMCCNKLTEL--PRG----------------IERLTHLTHLALDQNQLKSIPH-GAF 155 (229)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSC--CTT----------------GGGCTTCSEEECCSSCCCCCCT-TTT
T ss_pred CCCcCCccCh-hHhCcchhhCeEeccCCccccc--Ccc----------------cccCCCCCEEECCCCcCCccCH-HHH
Confidence 8888887765 4567788888888888888866 554 5677888888888888888753 567
Q ss_pred cCCCCCcEEEccCCCCCCCCCc-chhhhhhhhhcCCceEecCccc
Q 016362 345 DSFPKLMDIRLSENPVSDPGRG-GISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
..+++|+.|++++|++..++.. ...+..+..+.+.+..+++..|
T Consensus 156 ~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v 200 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAV 200 (229)
T ss_dssp TTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEE
T ss_pred hCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCccc
Confidence 7888888899998888764421 1122223445566666666443
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.5e-18 Score=171.73 Aligned_cols=175 Identities=28% Similarity=0.359 Sum_probs=150.9
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016362 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|+.|++++|.+...+ .+.. +++|+.|+|++|.+.++. . +..+++|+.|+|++|.+... +.+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIK---P-LTNLKNLGWLFLDENKIKDL-SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGG-CTTCCEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCCCC-TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHcc-CCCCCEEEeeCCCCCCCh---h-hccCCCCCEEECcCCCCCCC-hhhccCCCC
Confidence 356788999999999998875 4544 699999999999999743 2 88999999999999999864 578899999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
+.|+|++|.+.. ++. +..+++|+.|+|++|.++++. .+..+++|+.|+|++|.+.+..+ +..+++|+.|
T Consensus 112 ~~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L 180 (605)
T 1m9s_A 112 KSLSLEHNGISD--ING-LVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNL 180 (605)
T ss_dssp CEEECTTSCCCC--CGG-GGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred CEEEecCCCCCC--Ccc-ccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCCCchh---hccCCCCCEE
Confidence 999999999985 333 478999999999999998862 57889999999999999998765 7889999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 339 (390)
+|++|.|+++ +. +..+++|+.|+|++|++++.+
T Consensus 181 ~Ls~N~i~~l--~~-----------------l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHISDL--RA-----------------LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCBC--GG-----------------GTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCCCC--hH-----------------HccCCCCCEEEccCCcCcCCc
Confidence 9999999987 33 567899999999999998754
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.2e-18 Score=149.50 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=107.8
Q ss_pred cCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCc
Q 016362 180 QLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259 (390)
Q Consensus 180 ~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L 259 (390)
.+++|+.|++++|.+... +.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+. .+..+++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKDVTSDKIP---NLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSCC-TTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTTCBGGGSC---CCTTCTTC
T ss_pred hcCCccEEeccCCCccCh-HHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCccCcccCh---hhcCCCCC
Confidence 344555555555555422 245555566666666665442 22 235677788888888887764433 57788999
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016362 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 338 (390)
+.|++++|.+++..+ ..+..+++|++|++++|. ++++ +. +..+++|++|++++|+++++
T Consensus 115 ~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~--~~-----------------l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 115 TLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI--MP-----------------LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC--GG-----------------GGGCSSCCEEECTTBCCCCC
T ss_pred CEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcccc--Hh-----------------hcCCCCCCEEECCCCCCcCh
Confidence 999999999987544 567889999999999998 7776 32 56789999999999999987
Q ss_pred hhhhhccCCCCCcEEEccCCCCCC
Q 016362 339 ASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 339 ~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+ .+..+++|++|++++|+|.+
T Consensus 175 ~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T---TGGGCSSCCEEEECBC----
T ss_pred H---HhccCCCCCEEEeeCcccCC
Confidence 5 57788999999999999864
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2e-18 Score=173.84 Aligned_cols=187 Identities=24% Similarity=0.223 Sum_probs=102.2
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeec--------------------
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC-------------------- 214 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~-------------------- 214 (390)
+++|+.|+++.|.+......+.....+.+|+.|+++.+........+..+++|+.+++..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 477888888887775433334455566677777766665544333444555555555544
Q ss_pred -----ccCCHHHHHHHHhcCCcccEEeccCCCccc-cCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016362 215 -----TGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 215 -----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
|.+.. ..+..+..++.|+.|++++|.+.. ..+. .+..+++|+.|+|++|++++.++ ..+..+++|++|+
T Consensus 450 l~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 450 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLN 524 (635)
T ss_dssp EECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred cccccccccc-ccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEE
Confidence 43332 112222344455555555554322 2221 34455555555555555555443 3455555555555
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCC-CCCcEEEccCCCCCCCC
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSF-PKLMDIRLSENPVSDPG 364 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~ 364 (390)
|++|+|+++. +.. +..+++|++|+|++|+|++.+ ++.+..+ ++|++|+|++||+.-++
T Consensus 525 Ls~N~l~~l~-~~~----------------~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 525 MSHNNFFSLD-TFP----------------YKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTSCCCBCC-CGG----------------GTTCTTCCEEECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCCCC-hhH----------------HhCCCCCCEEECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCcccC
Confidence 5555555542 111 455677777777777777653 3556665 46777777777776544
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=147.59 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=110.5
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016362 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L 264 (390)
+.+++++|.++..+..+. ..+++|++++|.++.......+..+++|++|++++|.++++.+. .+..+++|+.|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCCEEEC
Confidence 356666666655433332 23466666666665321222346777888888888888777654 5777888888888
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016362 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l 344 (390)
++|.++..++ ..+..+++|++|+|++|+|+.+. |.. +..+++|++|+|++|+|++.+ +..+
T Consensus 89 s~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~ 149 (220)
T 2v70_A 89 TSNRLENVQH-KMFKGLESLKTLMLRSNRITCVG-NDS----------------FIGLSSVRLLSLYDNQITTVA-PGAF 149 (220)
T ss_dssp CSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBC-TTS----------------STTCTTCSEEECTTSCCCCBC-TTTT
T ss_pred CCCccCccCH-hHhcCCcCCCEEECCCCcCCeEC-HhH----------------cCCCccCCEEECCCCcCCEEC-HHHh
Confidence 8888887765 56778888888888888888774 333 567788888888888888863 3677
Q ss_pred cCCCCCcEEEccCCCCCCCC
Q 016362 345 DSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~ 364 (390)
..+++|++|++++|++..++
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTCTTCCEEECCSCCEECSG
T ss_pred cCCCCCCEEEecCcCCcCCC
Confidence 88888888888888887544
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.2e-17 Score=145.88 Aligned_cols=134 Identities=25% Similarity=0.304 Sum_probs=72.3
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016362 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
+|+.|++++|.++. ..+..+..+++|++|++++|.++.+.+. .+..+++|+.|+|++|.++..+. ..+..+++|+
T Consensus 33 ~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~ 107 (220)
T 2v9t_B 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQ 107 (220)
T ss_dssp TCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred CCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHH---HhhCCcCCCEEECCCCcCCccCH-hHccCCCCCC
Confidence 44444444444442 1111224445555555555555555333 45555666666666666665553 3445566666
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+|+|++|+|+.+. +.. +..+++|++|+|++|+|++++ ...+..+++|++|++++|++.-
T Consensus 108 ~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 108 LLLLNANKINCLR-VDA----------------FQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSCCCCCC-TTT----------------TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCEeC-HHH----------------cCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCC
Confidence 6666666666553 222 445566666666666666653 2345556666666666666654
No 122
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.74 E-value=4.8e-18 Score=120.84 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=61.3
Q ss_pred CCCCCCCEEEeCCCc-eeeEEEEEeeecCCC--CCeEEEEEecCCCCCCCCEECCEEEE-ecCCCCcceeeeeccC
Q 016362 7 ESYKLGQRVHSANDA-RRIGTVKYVGEVQGY--SGTWLGVDWDYGNGKHDGSINGVRYF-QAKSQKSGSFVRVHNL 78 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~-~~~~tv~~~g~~~~~--~~~w~Gv~~d~~~gk~~g~~~g~~yf-~~~~~~~~sf~~~~~~ 78 (390)
+.++||+|+++..+. .++|||||+|++++. ++.|+|||+|+|.||+||+++|+||| .|. +++|.|+.+..+
T Consensus 8 ~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~-~~~g~fV~~~d~ 82 (92)
T 1whm_A 8 PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFAC-VESTILLHINDI 82 (92)
T ss_dssp CSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCC-TTTEEEEEGGGE
T ss_pred cCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccC-CCcceEcccccC
Confidence 568999999986332 467999999999864 58999999999999999999999999 555 599999998876
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-18 Score=148.51 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCCEEEccCCCCCCccCC-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccE
Q 016362 183 ALAVLNLSNNLMSKEVTG-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQL 261 (390)
Q Consensus 183 ~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~ 261 (390)
+|++|++++|+++...+. +..+++|++|++++|.++. ..+..+..+++|++|++++|.++++++. .+..+++|+.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~ 104 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNG---VFDKLTQLKE 104 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHh---HhcCccCCCE
Confidence 344444444444333221 3344444444444444432 1111223455555555555555544432 3455666666
Q ss_pred EEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhh
Q 016362 262 LNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI 341 (390)
Q Consensus 262 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 341 (390)
|+|++|.+++.++ ..+..+++|++|++++|.++++. +.. +..+++|++|++++|.+..
T Consensus 105 L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~----------------~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 105 LALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVP-DGV----------------FDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTT----------------TTTCTTCCEEECCSCCBCC----
T ss_pred EEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeC-HHH----------------hccCCCccEEEecCCCeec----
Confidence 6666666665543 34556666666666666666552 111 3455666666666664432
Q ss_pred hhccCCCCCcEEEccCCCCC
Q 016362 342 DSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 342 ~~l~~l~~L~~L~l~~n~l~ 361 (390)
.+++|+.|+++.|.++
T Consensus 163 ----~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----CTTTTHHHHHHHHHCT
T ss_pred ----CCCCHHHHHHHHHhCC
Confidence 2456666666666665
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.6e-18 Score=162.31 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=155.4
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCE-EEccCCCCCCc
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAV-LNLSNNLMSKE 197 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~l~~L~~-L~ls~n~l~~~ 197 (390)
+...||..+ .+++++|+|++|.|+.+++..+..+++|++|+|++|.+.. .++ ..+.++++|.. +.++.|++...
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCccccc
Confidence 344555433 3578888999998888877554556899999999888754 232 34667777765 55566888877
Q ss_pred cC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccC-CCccccCCCCCCccCCC-CCccEEEcCCCCCCCchh
Q 016362 198 VT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSE 274 (390)
Q Consensus 198 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~ 274 (390)
.+ .+..+++|++|++++|.+... .+..+....++..|++.+ +.+..+... .+..+ ..++.|+|++|.|+..+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECT
T ss_pred CchhhhhccccccccccccccccC-Cchhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCCh
Confidence 66 577888999999998887631 111223344567777755 556666543 34444 468888999998887764
Q ss_pred hhhcCCCCCcCeEecCC-CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEE
Q 016362 275 ILKLCQIRSLEQLYLNK-NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDI 353 (390)
Q Consensus 275 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L 353 (390)
......+|++|++.+ |.++.+ |... +..+++|++|+|++|+|+.++. ..+.+|+.|
T Consensus 172 --~~f~~~~L~~l~l~~~n~l~~i--~~~~---------------f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L 228 (350)
T 4ay9_X 172 --SAFNGTQLDELNLSDNNNLEEL--PNDV---------------FHGASGPVILDISRTRIHSLPS----YGLENLKKL 228 (350)
T ss_dssp --TSSTTEEEEEEECTTCTTCCCC--CTTT---------------TTTEECCSEEECTTSCCCCCCS----SSCTTCCEE
T ss_pred --hhccccchhHHhhccCCcccCC--CHHH---------------hccCcccchhhcCCCCcCccCh----hhhccchHh
Confidence 334556888888874 677777 4321 6778899999999999998762 235667777
Q ss_pred EccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 354 RLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 354 ~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
++.++.-. ..+|. +..+++|+.++++
T Consensus 229 ~~l~~~~l----~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 229 RARSTYNL----KKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp ECTTCTTC----CCCCC---TTTCCSCCEEECS
T ss_pred hhccCCCc----CcCCC---chhCcChhhCcCC
Confidence 76666533 23554 6778888888764
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.5e-18 Score=172.10 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=143.1
Q ss_pred HHHHHHhccccccEeecCCcccCCCCc----chhhhcCcccEEECCCCcCC--ChHHHHHHHhcCCCCCEEEccCCCCCC
Q 016362 123 KIQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLS--DWKDIGAFGEQLPALAVLNLSNNLMSK 196 (390)
Q Consensus 123 ~i~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~l~--~~~~~~~~l~~l~~L~~L~ls~n~l~~ 196 (390)
.++.....+++|++|++++|.+.+.+. .+...+++|++|++++|.+. ....++..+..+++|++|++++|.+.+
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 344445566777777777776655432 23334566666666666665 223455555666666666666654321
Q ss_pred c-------------------------------------------------cC-CCCCCCCccEEEeecccCCHHHHHHHH
Q 016362 197 E-------------------------------------------------VT-GLPQLKSIRILVLNCTGVNWMQVEILK 226 (390)
Q Consensus 197 ~-------------------------------------------------~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~ 226 (390)
. .+ .+..+++|++|++++|.+++..+...+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 0 01 123456788888888887766665656
Q ss_pred hcCCcccEEeccCCCccccCC-C---------------------------------CCCccCCCCCccEEEcCCCCCCCc
Q 016362 227 HSLPALEELHLMGNSISEITP-V---------------------------------SSPIVQGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~~-~---------------------------------~~~~l~~l~~L~~L~L~~n~l~~~ 272 (390)
..+++|++|+++ +.+.+... . .......+++|+.|+++.|.+++.
T Consensus 315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 677777777665 22221110 0 000012244555555555555443
Q ss_pred hhhhhcCC-CCCcCeEecC----CCcccccc----CCC---CCchhhhhhccc--ccccC------CCCCCCCCEEeCCC
Q 016362 273 SEILKLCQ-IRSLEQLYLN----KNNLNRIY----YPN---NDTIHELVSAHE--SHEES------YLPFQNLCCLLLGN 332 (390)
Q Consensus 273 ~~~~~l~~-l~~L~~L~L~----~n~l~~~~----~~~---~~~~l~~~~~~~--~~~~~------~~~l~~L~~L~Ls~ 332 (390)
.. ..+.. +++|+.|+++ .|.+++.. .+. ....++.++++. +.+.. ...+++|++|++++
T Consensus 394 ~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 394 SL-ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HH-HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 22 22332 5666666664 44555420 000 012233344421 11111 12378899999999
Q ss_pred CCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCccc
Q 016362 333 NMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 333 N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
|.+++......+..+++|++|++++|++++ ..++.. +..+++|+.|+++..
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~--~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSE---RAIAAA--VTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBH---HHHHHH--HHHCSSCCEEEEESC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcH---HHHHHH--HHhcCccCeeECcCC
Confidence 988875444456778999999999998763 223433 567889999887753
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3.9e-18 Score=159.67 Aligned_cols=217 Identities=17% Similarity=0.154 Sum_probs=164.7
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCEEEccCCCCCCccC--CCCCCCCccE-E
Q 016362 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAVLNLSNNLMSKEVT--GLPQLKSIRI-L 210 (390)
Q Consensus 135 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~-L 210 (390)
+.++.++++++.+|..+ .+++++|+|++|.++. +| ..|.++++|++|++++|++.+.++ .|..++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56788899999887655 3689999999999985 44 468899999999999999876554 4778888775 5
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCC-CCCCCchhhhhcCCC-CCcCeEe
Q 016362 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED-NCIAEWSEILKLCQI-RSLEQLY 288 (390)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l-~~L~~L~ 288 (390)
.+..|++.. ..+..+..+++|++|++++|.++..+.. .+....++..|++.+ +.+...+. ..+..+ ..++.|+
T Consensus 86 ~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 86 IEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILW 160 (350)
T ss_dssp EEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEE
T ss_pred cccCCcccc-cCchhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccc-cchhhcchhhhhhc
Confidence 666788874 2344557899999999999999887654 344556788898865 56776664 445554 4789999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCC-CCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGN-NMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
|++|+|+.+ +.. .....+|++|++++ |.++.++. +.+..+++|+.|++++|.|+.
T Consensus 161 L~~N~i~~i--~~~----------------~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~----- 216 (350)
T 4ay9_X 161 LNKNGIQEI--HNS----------------AFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHS----- 216 (350)
T ss_dssp CCSSCCCEE--CTT----------------SSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCC-----
T ss_pred cccccccCC--Chh----------------hccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcCc-----
Confidence 999999988 443 33457899999985 68888753 678899999999999999986
Q ss_pred hhhhhhhhhcCCceEecCcc
Q 016362 368 ISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|.. .+..+.+|+.++...
T Consensus 217 lp~~-~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 217 LPSY-GLENLKKLRARSTYN 235 (350)
T ss_dssp CCSS-SCTTCCEEECTTCTT
T ss_pred cChh-hhccchHhhhccCCC
Confidence 4432 255666666665543
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.1e-18 Score=153.78 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=120.5
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+++|+.|++++|.+...+ .+.. +++|++|++++|.+.++. . +..+++|++|++++|+++... .+.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~-~~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQF-FTNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLN-GIPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCT-TCCC-SS
T ss_pred chhhcCcCcEEECcCCCcccch-HHhh-CCCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcC-cccc-Cc
Confidence 3567899999999999999876 4554 599999999999999743 3 889999999999999998654 3334 88
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
|++|++++|.++. ++. +..+++|++|++++|.+++.. .+..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 108 L~~L~L~~N~l~~--~~~-l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 108 LSRLFLDNNELRD--TDS-LIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp CCEEECCSSCCSB--SGG-GTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred ccEEEccCCccCC--Chh-hcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 9999999988874 332 467888888888888887763 366778888888888888776 34677788888
Q ss_pred EecCCCccccc
Q 016362 287 LYLNKNNLNRI 297 (390)
Q Consensus 287 L~L~~n~l~~~ 297 (390)
|++++|.++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 88888887765
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=4.9e-18 Score=146.95 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=138.3
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCccEEEee
Q 016362 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILVLN 213 (390)
Q Consensus 135 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~L~ 213 (390)
+.++++++.+..++..+ .++|++|++++|.+..+ .+..+..+++|++|++++|+++...+. +..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSL--PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcC--ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 46777778777776544 36889999999988863 234567889999999999998876664 6788999999999
Q ss_pred cccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc
Q 016362 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (390)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 293 (390)
+|.++. ..+..+..+++|++|++++|.+++.++. .+..+++|+.|+|++|.+++.++ ..+..+++|++|++++|.
T Consensus 85 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 85 TNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCC
Confidence 998874 2333447888999999999999877654 56788999999999999988775 567889999999999996
Q ss_pred cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC
Q 016362 294 LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK 349 (390)
Q Consensus 294 l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~ 349 (390)
+... +++|+.|+++.|++++. .++.++.++.
T Consensus 160 ~~~~------------------------~~~l~~L~~~~n~~~g~-ip~~~~~l~~ 190 (208)
T 2o6s_A 160 WDCT------------------------CPGIRYLSEWINKHSGV-VRNSAGSVAP 190 (208)
T ss_dssp BCCC------------------------TTTTHHHHHHHHHCTTT-BBCTTSSBCT
T ss_pred eecC------------------------CCCHHHHHHHHHhCCce-eeccCccccC
Confidence 6542 46788888888888863 3345555543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.4e-18 Score=160.76 Aligned_cols=181 Identities=22% Similarity=0.312 Sum_probs=122.6
Q ss_pred cEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEe
Q 016362 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (390)
Q Consensus 159 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 236 (390)
+.++++++.+.. +|..+ .+.++.|++++|+++...+. +. .+++|++|+|++|.++.. .+..+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~---iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN---VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS---CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc---cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEE
Confidence 456666666653 33221 23466777777777665553 44 677777777777776632 223346777888888
Q ss_pred ccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccc
Q 016362 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHE 316 (390)
Q Consensus 237 l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~ 316 (390)
|++|.++.+.+. .+..+++|+.|+|++|.++...+ ..+..+++|+.|+|++|+|+.+ |... +
T Consensus 95 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l--~~~~------------~ 156 (361)
T 2xot_A 95 LSSNHLHTLDEF---LFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRF--PVEL------------I 156 (361)
T ss_dssp CCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSC--CGGG------------T
T ss_pred CCCCcCCcCCHH---HhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCee--CHHH------------h
Confidence 888888777654 56778888888888888887755 5677888888888888888876 3321 0
Q ss_pred cCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC--CcEEEccCCCCCCCC
Q 016362 317 ESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK--LMDIRLSENPVSDPG 364 (390)
Q Consensus 317 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~ 364 (390)
.+...+++|++|+|++|+|+.++ ...+..++. |+.|+|++||+.-++
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEEecCCCccCCc
Confidence 00145788999999999998875 356677776 478999999987543
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=3.3e-17 Score=162.00 Aligned_cols=174 Identities=21% Similarity=0.215 Sum_probs=141.3
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (390)
.+|+.|++++|.+++ +|..+ .++|++|++++|.++..+ ..+++|++|++++|.++. ++. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~---lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC---CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc---cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 489999999999986 44433 478999999999998544 567899999999999985 443 222 89999
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccc
Q 016362 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESH 315 (390)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~ 315 (390)
++++|.+++++. .+++|+.|+|++|.+++.+. .+++|++|+|++|+|+.+ |..
T Consensus 126 ~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~l--p~l------------- 178 (571)
T 3cvr_A 126 DVDNNQLTMLPE-------LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFL--PEL------------- 178 (571)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCC--CCC-------------
T ss_pred ECCCCcCCCCCC-------cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCc--chh-------------
Confidence 999999998542 56899999999999998653 578999999999999986 442
Q ss_pred ccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC-------cEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016362 316 EESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL-------MDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 316 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
. ++|+.|+|++|+|+.++. +.. +| +.|+|++|.|+. +|.. +..+++|+.|+++.
T Consensus 179 ---~---~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~--l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 179 ---P---ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITH-----IPEN--ILSLDPTCTIILED 239 (571)
T ss_dssp ---C---TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCC-----CCGG--GGGSCTTEEEECCS
T ss_pred ---h---CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCccee-----cCHH--HhcCCCCCEEEeeC
Confidence 2 899999999999998763 333 66 999999999984 7776 77799999999875
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.1e-18 Score=174.72 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=162.2
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccC--------
Q 016362 121 KDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN-------- 191 (390)
Q Consensus 121 ~~~i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~-------- 191 (390)
...++..+..+++|++|++++|.+..... .+...+++|++|+++ +.+.+ ..++..+..+++|++|++++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccc
Confidence 35566667788888888888888554333 334556888888888 44433 35566667888899999883
Q ss_pred ---CCCCCccC-C-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEecc----CCCccccCCC--CCCccCCCCCcc
Q 016362 192 ---NLMSKEVT-G-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLM----GNSISEITPV--SSPIVQGFDNLQ 260 (390)
Q Consensus 192 ---n~l~~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~----~n~l~~~~~~--~~~~l~~l~~L~ 260 (390)
+.++.... . ...+++|++|+++.+.+++..+..+...+++|++|+++ .|.+++.+.. +...+..+++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 44543211 1 23578899999988888887777776668899999986 5566553210 111245678899
Q ss_pred EEEcCCCC--CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016362 261 LLNLEDNC--IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 261 ~L~L~~n~--l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 338 (390)
.|+++.|. +++.........+++|++|++++|.+++...+.. +..+++|++|+|++|.|++.
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------------~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF----------------SRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH----------------HTCCTTCCEEEEESCCCBHH
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH----------------HhcCcccCeeeccCCCCcHH
Confidence 99997543 5544331222358889999999999887543332 45789999999999998764
Q ss_pred hhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016362 339 ASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 339 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
........+++|++|++++|++++.....+ ...+|.+++
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-----~~~~p~l~~ 542 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLM-----QMARPYWNI 542 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGG-----GGCCTTEEE
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHH-----HHhCCCcEE
Confidence 333344579999999999999986432222 345676543
No 132
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.1e-17 Score=139.94 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=126.7
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-cCCCCCCCCc
Q 016362 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-VTGLPQLKSI 207 (390)
Q Consensus 129 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~~~l~~L 207 (390)
..+++|+.|++++|.+...+ .+.. +++|++|++++|.+..+ ..+..+++|++|++++|+++.. +..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEY-AHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGG-CTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhc-CCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 45778999999999999766 4554 59999999999988764 3578899999999999999874 4478899999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
++|++++|.++.. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+++.+ .+..+++|++
T Consensus 115 ~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 115 TLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE
T ss_pred CEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE
Confidence 9999999999863 34455899999999999998 76653 4788899999999999999865 4678899999
Q ss_pred EecCCCccccc
Q 016362 287 LYLNKNNLNRI 297 (390)
Q Consensus 287 L~L~~n~l~~~ 297 (390)
|++++|+|.+.
T Consensus 186 L~l~~N~i~~~ 196 (197)
T 4ezg_A 186 LYAFSQTIGGK 196 (197)
T ss_dssp EEECBC-----
T ss_pred EEeeCcccCCc
Confidence 99999998763
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=5.2e-19 Score=175.49 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=106.0
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
.|+.|++++|.+++++ .+..+++|+.|+|++|.++..+ ..++.+++|+.|+|++|.|+++ | .
T Consensus 442 ~L~~L~Ls~n~l~~lp-----~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l--p-~-------- 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-----HLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV--D-G-------- 503 (567)
T ss_dssp TCSEEECTTSCCSSCC-----CGGGGTTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-G--------
T ss_pred CceEEEecCCCCCCCc-----CccccccCcEeecCcccccccc--hhhhcCCCCCEEECCCCCCCCC--c-c--------
Confidence 5999999999999863 2788899999999999999876 4688999999999999999986 5 2
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+..+++|++|+|++|+|++...+..+..+++|+.|+|++|+++.... ... .++..+|+|++||+
T Consensus 504 --------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~--~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 --------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQE--RLAEMLPSVSSILT 567 (567)
T ss_dssp --------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTT--HHHHHCTTCSEEEC
T ss_pred --------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHH--HHHHHCcccCccCC
Confidence 67899999999999999998324789999999999999999985321 122 23677999999974
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=6.7e-17 Score=141.09 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=102.3
Q ss_pred cEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEec
Q 016362 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHL 237 (390)
Q Consensus 159 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 237 (390)
+.++++++.++. +|..+ .++|+.|++++|+++...+ .+..+++|++|+|++|.++. ..+..+..+++|++|++
T Consensus 14 ~~v~c~~~~l~~---iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTE---IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSS---CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCc---CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEEC
Confidence 445555555553 22211 1456666666666665544 45666666666666666653 22333466777778888
Q ss_pred cCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccccc
Q 016362 238 MGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317 (390)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~ 317 (390)
++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|++|+|++|.|+.+. +..
T Consensus 88 s~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~--------------- 147 (220)
T 2v9t_B 88 YGNKITELPKS---LFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA-KGT--------------- 147 (220)
T ss_dssp CSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTT---------------
T ss_pred CCCcCCccCHh---HccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC-HHH---------------
Confidence 88877766554 46777888888888888888765 56778888888888888888874 222
Q ss_pred CCCCCCCCCEEeCCCCCCCCc
Q 016362 318 SYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 318 ~~~~l~~L~~L~Ls~N~i~~~ 338 (390)
+..+++|++|+|++|.+...
T Consensus 148 -~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 148 -FSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -TTTCTTCCEEECCSSCEECS
T ss_pred -HhCCCCCCEEEeCCCCcCCC
Confidence 56678888888888887653
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=149.59 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=136.6
Q ss_pred CCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHh-cCCcccEEeccCCCccccCCCCCCccCCCCCccEE
Q 016362 184 LAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKH-SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262 (390)
Q Consensus 184 L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L 262 (390)
-+.++++++.++..+..+. ..++.|+|++|.++.. .+..+. .+++|++|++++|.++++.+. .+..+++|+.|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~~L 93 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSE---AFVPVPNLRYL 93 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTT---TTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChh---hccCCCCCCEE
Confidence 3689999999987655554 4689999999999852 233334 889999999999999998765 68889999999
Q ss_pred EcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhh
Q 016362 263 NLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 263 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 342 (390)
+|++|.++..++ ..+..+++|+.|+|++|.|+.+. +.. +..+++|++|+|++|+|+.++. .
T Consensus 94 ~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~l~~-~ 154 (361)
T 2xot_A 94 DLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVD-RNA----------------FEDMAQLQKLYLSQNQISRFPV-E 154 (361)
T ss_dssp ECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCCSCCG-G
T ss_pred ECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEEC-HHH----------------hCCcccCCEEECCCCcCCeeCH-H
Confidence 999999998775 56889999999999999999884 333 6788999999999999999753 3
Q ss_pred hc---cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCc--eEecCc
Q 016362 343 SL---DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKI--KILNGS 386 (390)
Q Consensus 343 ~l---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L--~~Ln~s 386 (390)
.+ ..+++|+.|+|++|.|.. ++.. .+..++.+ +.|+++
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~-----l~~~-~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKK-----LPLT-DLQKLPAWVKNGLYLH 197 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCC-----CCHH-HHHHSCHHHHTTEECC
T ss_pred HhcCcccCCcCCEEECCCCCCCc-----cCHH-HhhhccHhhcceEEec
Confidence 44 579999999999999985 3321 25666653 556554
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=138.63 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=130.2
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEee
Q 016362 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (390)
Q Consensus 135 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~ 213 (390)
+.++++++.++.++..+. +.+++|++++|.++.+. .+..+..+++|++|++++|+++...+ .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEEC-CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccC-chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 588999999998876553 56789999999998631 01347899999999999999998777 68899999999999
Q ss_pred cccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc
Q 016362 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (390)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 293 (390)
+|.++. ..+..+..+++|++|++++|.++++.+. .+..+++|+.|+|++|.+++..+ ..+..+++|+.|+|++|.
T Consensus 90 ~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred CCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence 999975 3344457899999999999999988665 68889999999999999999865 678899999999999999
Q ss_pred cccc
Q 016362 294 LNRI 297 (390)
Q Consensus 294 l~~~ 297 (390)
++..
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 8754
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=2.7e-16 Score=138.10 Aligned_cols=153 Identities=22% Similarity=0.192 Sum_probs=121.0
Q ss_pred ccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCccEEEe
Q 016362 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILVL 212 (390)
Q Consensus 134 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~L 212 (390)
-+.++++++.+..++..+. ++|++|+|++|.+.. ..+..+..+++|++|++++|++....+. +..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567888888887776443 788999999999886 3356678889999999999998776653 678899999999
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016362 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 213 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
++|.++. ..+..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.++..+. ..+..+++|+.|++++|
T Consensus 96 s~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 96 GTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred CCCcCCc-cChhHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence 9998874 233444778899999999999886643 46788899999999999988775 56788899999999999
Q ss_pred ccccc
Q 016362 293 NLNRI 297 (390)
Q Consensus 293 ~l~~~ 297 (390)
.+...
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 87653
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=6.7e-17 Score=161.79 Aligned_cols=259 Identities=18% Similarity=0.188 Sum_probs=153.7
Q ss_pred HHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCC-cCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--
Q 016362 124 IQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGN-LLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-- 199 (390)
Q Consensus 124 i~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-- 199 (390)
++.....+++|++|+++++.+++... .+...+++|++|++++| .+.. ..++..+..+++|++|++++|.+++..+
T Consensus 97 l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 34445677788888888887665443 44434688888888887 3432 3356666678888888888887654322
Q ss_pred --C-CCCCCCccEEEeeccc--CCHHHHHHHHhcCCcccEEeccCCC-ccc-------------c---------------
Q 016362 200 --G-LPQLKSIRILVLNCTG--VNWMQVEILKHSLPALEELHLMGNS-ISE-------------I--------------- 245 (390)
Q Consensus 200 --~-~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-------------~--------------- 245 (390)
. ...+++|++|++++|. ++...+..+...+++|++|++++|. +++ .
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 1 2256788888887775 5555666666677778888777761 110 0
Q ss_pred ---------------------CC-CCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCC-
Q 016362 246 ---------------------TP-VSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNN- 302 (390)
Q Consensus 246 ---------------------~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~- 302 (390)
.. .++..+..+++|+.|+|++|.+++......+..+++|++|++++| +++...+..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 00 001111245788888888888665432234567888888888877 443221111
Q ss_pred --Cchhhhhhccc---------ccccC-----C-CCCCCCCEEeCCCCCCCCchhhhhcc-CCCCCcEEEcc--C----C
Q 016362 303 --DTIHELVSAHE---------SHEES-----Y-LPFQNLCCLLLGNNMIEDLASIDSLD-SFPKLMDIRLS--E----N 358 (390)
Q Consensus 303 --~~~l~~~~~~~---------~~~~~-----~-~~l~~L~~L~Ls~N~i~~~~~~~~l~-~l~~L~~L~l~--~----n 358 (390)
...++.+++.. +..+. + ..+++|++|.++.|.+++.. +..+. .+++|++|+++ + +
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH-HHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH-HHHHHhhCCCcceeEeecccCCCcc
Confidence 11233333311 11111 1 13678888888777887643 33443 58888888888 3 4
Q ss_pred CCCCCCC-cchhhhhhhhhcCCceEecCcc
Q 016362 359 PVSDPGR-GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 359 ~l~~~~~-~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+++... ..++. ++..+++|+.|+++.
T Consensus 414 ~l~~~~~~~~~~~--l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 414 YLTLEPLDIGFGA--IVEHCKDLRRLSLSG 441 (594)
T ss_dssp TTTCCCTHHHHHH--HHHHCTTCCEEECCS
T ss_pred cccCCchhhHHHH--HHhhCCCccEEeecC
Confidence 4543211 12232 267788888888864
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=1.8e-17 Score=166.00 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=77.8
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEecc--C----CCccccCC--CCCCccCCCCCccEEEcCCCCCCCchhh
Q 016362 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLM--G----NSISEITP--VSSPIVQGFDNLQLLNLEDNCIAEWSEI 275 (390)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~--~----n~l~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 275 (390)
+++|+.|.+..+.+++..+..+...+++|+.|+++ + +.++..+. .+...+..+++|+.|+|++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~- 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF- 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence 45555555555555544444444445555555555 2 23331110 0000123445555666644 3333221
Q ss_pred hhcCC-CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016362 276 LKLCQ-IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 276 ~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
..+.. +++|+.|+|++|.+++...+.. ...+++|++|+|++|.+++.........+++|++|+
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l----------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHV----------------LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHH----------------HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHH----------------HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 22222 5556666666666554432111 134678888888888776543323344577888888
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016362 355 LSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
+++|+++. ..... +...+|+|++
T Consensus 513 l~~~~~~~---~~~~~--l~~~lp~l~i 535 (594)
T 2p1m_B 513 MSSCSVSF---GACKL--LGQKMPKLNV 535 (594)
T ss_dssp EESSCCBH---HHHHH--HHHHCTTEEE
T ss_pred eeCCCCCH---HHHHH--HHHhCCCCEE
Confidence 88887742 11111 2355666644
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=5.8e-16 Score=126.39 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=108.9
Q ss_pred cCCcccEEeccCCCcc-ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016362 228 SLPALEELHLMGNSIS-EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 228 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 306 (390)
..++|++|++++|.++ +..+. .+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.. |..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~---- 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVL---- 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHH----
T ss_pred CCccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHH----
Confidence 4478999999999998 33332 578889999999999999987 45788999999999999999841 332
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh--hhhhhhcCCceEec
Q 016362 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR--FAIIARLGKIKILN 384 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~i~~l~~L~~Ln 384 (390)
+..+++|++|++++|++++++.+..+..+++|++|++++|++++ ++. ...++.+++|+.||
T Consensus 84 ------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 84 ------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-----LNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp ------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-----STTHHHHHHHHCTTCCEET
T ss_pred ------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-----hHHHHHHHHHHCCCccccc
Confidence 44589999999999999997666788999999999999999985 222 22488999999999
Q ss_pred Ccc
Q 016362 385 GSE 387 (390)
Q Consensus 385 ~s~ 387 (390)
+++
T Consensus 147 l~d 149 (149)
T 2je0_A 147 GYD 149 (149)
T ss_dssp TBC
T ss_pred CCC
Confidence 874
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=2.6e-15 Score=126.22 Aligned_cols=134 Identities=25% Similarity=0.361 Sum_probs=91.4
Q ss_pred cCCcccEEeccCCCccccCCCCCCccCCC-CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016362 228 SLPALEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 306 (390)
.+.+|++|++++|.++.++ .+..+ ++|+.|+|++|.+++. ..+..+++|++|++++|.|+.+ |...
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-----~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~--~~~~--- 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI--GEGL--- 83 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-----CGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE--CSCH---
T ss_pred CcCCceEEEeeCCCCchhH-----HhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc--Ccch---
Confidence 4556777777777777542 13333 3788888888887765 3467778888888888888776 3321
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016362 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+..+++|++|++++|+|++++.+..+..+++|+.|++++|++.... ..+..+++.+++|+.||++
T Consensus 84 ------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 84 ------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTE
T ss_pred ------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCC
Confidence 3567788888888888877765456777888888888888876421 1122347778888888887
Q ss_pred ccC
Q 016362 387 EVN 389 (390)
Q Consensus 387 ~i~ 389 (390)
.++
T Consensus 149 ~n~ 151 (176)
T 1a9n_A 149 KVK 151 (176)
T ss_dssp ECC
T ss_pred cCC
Confidence 653
No 142
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.3e-15 Score=126.96 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=76.7
Q ss_pred CCcccEEeccCCCcc-ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhh
Q 016362 229 LPALEELHLMGNSIS-EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 229 l~~L~~L~l~~n~l~-~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 307 (390)
.++|++|++++|.++ +..+. .+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++. .|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~----- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDML----- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS---CCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHH-----
T ss_pred cccCCEEECCCCCCChhhHHH---HHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHH-----
Confidence 355666666666665 22121 345566666666666666654 3455666666666666666663 1222
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh--hhhhhhcCCceEecC
Q 016362 308 LVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR--FAIIARLGKIKILNG 385 (390)
Q Consensus 308 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~i~~l~~L~~Ln~ 385 (390)
+..+++|++|++++|+|++++.+..+..+++|++|++++|++.. ++. ...+..+++|+.|++
T Consensus 91 -----------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 91 -----------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-----LNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp -----------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-----STTHHHHHHTTCSSCCEETT
T ss_pred -----------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-----hHHHHHHHHHhCccCcEecC
Confidence 23456666666666666665544556666666666666666653 221 123566666666666
Q ss_pred ccc
Q 016362 386 SEV 388 (390)
Q Consensus 386 s~i 388 (390)
+.+
T Consensus 155 ~~n 157 (168)
T 2ell_A 155 YDR 157 (168)
T ss_dssp EET
T ss_pred CCC
Confidence 554
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.2e-16 Score=158.55 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=143.2
Q ss_pred ChhHHHHHHhccccccEeecCCcc-------------cCCCCcchhhhcCcccEEE-CCCCcCCChHHHH---HHHhc--
Q 016362 120 GKDKIQDKFSKFEELTSAALPYLG-------------VSSPGANIGTIVTNLKELD-LTGNLLSDWKDIG---AFGEQ-- 180 (390)
Q Consensus 120 g~~~i~~~~~~l~~L~~L~l~~~~-------------i~~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~---~~l~~-- 180 (390)
.++.+|..++.+++|+.|+++++. ..+..+.....+++|+.|+ ++.|.+..+..+. ..+..
T Consensus 360 ~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~ 439 (567)
T 1dce_A 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC
Confidence 457899999999999999997764 3333333334458899988 6766554332210 01222
Q ss_pred CCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCcc
Q 016362 181 LPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQ 260 (390)
Q Consensus 181 l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~ 260 (390)
...|+.|++++|.+++.+ .+..+++|+.|+|++|.++ .++..+..+++|+.|++++|.+++++ .+..+++|+
T Consensus 440 ~~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-----~l~~l~~L~ 511 (567)
T 1dce_A 440 YADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-----GVANLPRLQ 511 (567)
T ss_dssp HTTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-----GGTTCSSCC
T ss_pred ccCceEEEecCCCCCCCc-CccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-----ccCCCCCCc
Confidence 236999999999998754 5999999999999999998 45666789999999999999999853 478899999
Q ss_pred EEEcCCCCCCCch-hhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeC
Q 016362 261 LLNLEDNCIAEWS-EILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (390)
Q Consensus 261 ~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L 330 (390)
.|+|++|.+++.. + ..++.+++|+.|+|++|.+++. |.....+ ...+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~--~~~~~~l------------~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQE--EGIQERL------------AEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGS--SSCTTHH------------HHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCC--ccHHHHH------------HHHCcccCccCC
Confidence 9999999999984 3 5788999999999999999987 4332111 234678888864
No 144
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=9.4e-16 Score=127.83 Aligned_cols=86 Identities=26% Similarity=0.370 Sum_probs=38.3
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (390)
++|++|++++|.+.. ..+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.++.. ++..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 445555555555441 02233344445555555555554433 3444444555555555444421 23333334444444
Q ss_pred eccCCCccc
Q 016362 236 HLMGNSISE 244 (390)
Q Consensus 236 ~l~~n~l~~ 244 (390)
++++|.+++
T Consensus 101 ~Ls~N~l~~ 109 (168)
T 2ell_A 101 NLSGNKLKD 109 (168)
T ss_dssp ECBSSSCCS
T ss_pred eccCCccCc
Confidence 444444443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1e-14 Score=135.11 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCC-EEeCCCCC
Q 016362 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC-CLLLGNNM 334 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~ 334 (390)
+++|+.++|.+|.++..+. ..+..+++|+.|+|.+| ++.+. ..+ |..|.+|+ .|++.+ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I~--~~a---------------F~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTIG--QRV---------------FSNCGRLAGTLELPA-S 284 (329)
T ss_dssp CTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEEC--TTT---------------TTTCTTCCEEEEECT-T
T ss_pred cCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-cceeh--HHH---------------hhCChhccEEEEEcc-c
Confidence 5677888888777777665 56777778888888776 66663 221 66777787 788777 6
Q ss_pred CCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEec
Q 016362 335 IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 384 (390)
Q Consensus 335 i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln 384 (390)
++.++ ...|..|++|+.|++++|.+.. ++.. ++..+++|+.+.
T Consensus 285 l~~I~-~~aF~~c~~L~~l~l~~n~i~~-----I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 VTAIE-FGAFMGCDNLRYVLATGDKITT-----LGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp CCEEC-TTTTTTCTTEEEEEECSSCCCE-----ECTT-TTCTTCCCCEEE
T ss_pred ceEEc-hhhhhCCccCCEEEeCCCccCc-----cchh-hhcCCcchhhhc
Confidence 66553 2567777888888887777764 3322 366777777664
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.1e-14 Score=124.24 Aligned_cols=130 Identities=23% Similarity=0.322 Sum_probs=66.1
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016362 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L 264 (390)
+++++++|+++..+..+.. +|++|++++|.++.......+..+++|++|++++|.++++.+. .+..+++|+.|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh---HcCCcccCCEEEC
Confidence 4555666555443333322 4555555555544211111234555555555555555555433 4555556666666
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016362 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~ 337 (390)
++|.+++.++ ..+..+++|++|+|++|+|+++. |.. +..+++|++|+|++|.++.
T Consensus 86 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM-PGS----------------FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC-TTS----------------STTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC-HHH----------------hhcCCCCCEEEeCCCCccC
Confidence 6666555543 34455556666666666665542 222 4445556666666665553
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.2e-17 Score=140.75 Aligned_cols=170 Identities=24% Similarity=0.367 Sum_probs=121.1
Q ss_pred HHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCC
Q 016362 176 AFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQG 255 (390)
Q Consensus 176 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 255 (390)
..+.....++.++++.+.+.+..+.+ + .++..+..+++|++|++++|.+++++ .+..
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l----------------~--~l~~~~~~l~~L~~L~ls~n~l~~l~-----~~~~ 68 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPI----------------E--KMDATLSTLKACKHLALSTNNIEKIS-----SLSG 68 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTC----------------C--CCHHHHHHTTTCSEEECSEEEESCCC-----CHHH
T ss_pred HHHHhcccccCcchheeEeccccCcH----------------h--hhhHHHhcCCCCCEEECCCCCCcccc-----cccc
Confidence 34566777777777777766543322 1 12334467888888888888887743 4667
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCC
Q 016362 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i 335 (390)
+++|+.|++++|.++.++. .+..+++|++|++++|+++++ |. +..+++|++|++++|+|
T Consensus 69 l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~L~~N~l~~l--~~-----------------~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASL--SG-----------------IEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp HTTCCEEEEEEEEECSCSS--HHHHHHHCSEEEEEEEECCCH--HH-----------------HHHHHHSSEEEESEEEC
T ss_pred CCCCCEEECCCCCcccccc--hhhcCCcCCEEECcCCcCCcC--Cc-----------------cccCCCCCEEECCCCcC
Confidence 7888888888888887653 344568889999999988876 32 45668899999999999
Q ss_pred CCchhhhhccCCCCCcEEEccCCCCCCCCCc----chhhhhhhhhcCCceEecCcccC
Q 016362 336 EDLASIDSLDSFPKLMDIRLSENPVSDPGRG----GISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 336 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
++++.+..+..+++|++|++++|++....+. ...+..++..+++|+.||+..|+
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 8876556788899999999999988642110 11223357888999999988776
No 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.2e-15 Score=124.44 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=66.1
Q ss_pred cCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhh
Q 016362 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 307 (390)
.+++|++|++++|.+++. . .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++++..+..
T Consensus 40 ~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~ls~N~i~~~~~~~~----- 108 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI-A----NLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLSTIEP----- 108 (149)
T ss_dssp TCTTCCEEECTTSCCCCC-T----TCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCEEECTTSCCCSHHHHGG-----
T ss_pred hcCCCcEEECcCCCCCCc-h----hhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCEEECCCCcCCChHHHHH-----
Confidence 344455555555555444 1 35566777777777777776332 334456777777777777776522222
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEEccC
Q 016362 308 LVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIRLSE 357 (390)
Q Consensus 308 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~--~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|++++|.+++.+.. ..+..+++|++|++++
T Consensus 109 -----------~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 109 -----------LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -----------GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -----------HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 45667777777777777766431 3566777777777653
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2e-15 Score=154.16 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChH-------HHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016362 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWK-------DIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 132 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
+.++.|+|.++.+...+.. .++.++|+.+.+..+. ..+..+..+++|+.|+|++|.+....+.+..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred CccceEEeeCCCCCcchhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 4466777777777664432 2233333333333211 34667888899999999999988666677788
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|++|+|++|.++ .++..+..+++|++|+|++|.++.++. .+..+++|+.|+|++|.|+.++. .++.+++|
T Consensus 247 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L 318 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMVTTLPW--EFGNLCNL 318 (727)
T ss_dssp CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCCCCCCS--STTSCTTC
T ss_pred CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCCCccCh--hhhcCCCc
Confidence 99999999999887 455556889999999999999985532 57888999999999999987764 48889999
Q ss_pred CeEecCCCccccccCCCCCchh----hhhhcccccccCCCCCCCCCEEeCCCC--------CCCCchhhhhccCCCCCcE
Q 016362 285 EQLYLNKNNLNRIYYPNNDTIH----ELVSAHESHEESYLPFQNLCCLLLGNN--------MIEDLASIDSLDSFPKLMD 352 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~l----~~~~~~~~~~~~~~~l~~L~~L~Ls~N--------~i~~~~~~~~l~~l~~L~~ 352 (390)
+.|+|++|.|++.. |...... ..+++++|.+.+.. ...|+.|+++.| .+.... ...+..+..+..
T Consensus 319 ~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~l~~~~-p~~l~~l~l~~n~~~~~~~~~l~~~~-~~~~~~l~~~~~ 395 (727)
T 4b8c_D 319 QFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNRPEIPL-PHERRFIEINTDGEPQREYDSLQQST-EHLATDLAKRTF 395 (727)
T ss_dssp CCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCCCCCCC-CCC------------------------------------
T ss_pred cEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCcccCcC-ccccceeEeecccccccccCCccccc-cchhhcccccce
Confidence 99999999998763 3332211 12467777777654 367899999888 222211 012334555666
Q ss_pred EEccCCCCC
Q 016362 353 IRLSENPVS 361 (390)
Q Consensus 353 L~l~~n~l~ 361 (390)
..+++|-+.
T Consensus 396 ~~ls~Nil~ 404 (727)
T 4b8c_D 396 TVLSYNTLC 404 (727)
T ss_dssp ------CCC
T ss_pred eeeeccccc
Confidence 777888775
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=1.7e-14 Score=123.03 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=110.3
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
-++++++++.++ .++.. -..+|++|++++|.++++.+. ..+..+++|+.|+|++|.+++..+ ..+..+++|++
T Consensus 10 ~~~l~~s~~~l~--~ip~~--~~~~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 82 (192)
T 1w8a_A 10 GTTVDCTGRGLK--EIPRD--IPLHTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQE 82 (192)
T ss_dssp TTEEECTTSCCS--SCCSC--CCTTCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCE
T ss_pred CCEEEcCCCCcC--cCccC--CCCCCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCE
Confidence 378999999886 33332 234899999999999987652 147889999999999999999865 67889999999
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|+|++|+|+++. +.. +..+++|++|+|++|+|++.. +..+..+++|++|++++|++..++
T Consensus 83 L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 83 LQLGENKIKEIS-NKM----------------FLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp EECCSCCCCEEC-SSS----------------STTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCccC-HHH----------------hcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcC
Confidence 999999999984 332 677899999999999999863 467889999999999999998644
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=119.41 Aligned_cols=127 Identities=21% Similarity=0.261 Sum_probs=73.8
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016362 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L 264 (390)
+.+++++|.++..+..+. ++|++|++++|.++ .++..+..+++|++|++++|.++++.+. .+..+++|+.|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~---~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQ---SFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHh---HccCCCCCCEEEC
Confidence 456666666665443332 45666666666665 2333445666666666666666655443 4556666666666
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016362 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 336 (390)
++|.++..++ ..+..+++|+.|+|++|.|+.+ +... +..+++|++|+|++|.+.
T Consensus 86 s~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~--~~~~---------------~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVV--PEGA---------------FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBC--CTTT---------------TTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCH-HHhCCCCCCCEEECCCCCCCee--Chhh---------------hhcCccccEEEeCCCCee
Confidence 6666666554 4455666666666666666655 2211 445566666666666654
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.6e-15 Score=124.64 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=55.7
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
+|++|++++|.+++. . .+..+++|+.|+|++|.+++.++ ..+..+++|++|++++|.|+++.....
T Consensus 43 ~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-------- 108 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-D----GFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGDLDP-------- 108 (176)
T ss_dssp CCSEEECCSSCCCEE-C----CCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGG--------
T ss_pred CCCEEECCCCCCCcc-c----ccccCCCCCEEECCCCcccccCc-chhhcCCCCCEEECCCCcCCcchhhHh--------
Confidence 555555555555544 1 24455555666666665555442 223455566666666666555421001
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEEccCCCCC
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~--~~l~~l~~L~~L~l~~n~l~ 361 (390)
+..+++|++|++++|.++..+.. ..+..+|+|+.|++++|.+.
T Consensus 109 --------l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 109 --------LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp --------GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred --------hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 34455666666666665544310 12455666666666666554
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=115.68 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=75.7
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016362 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~ 309 (390)
++|++|++++|.++++++. .+..+++|+.|++++|.++..++ ..+..+++|++|++++|.++.+. +..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~------- 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLP-NGV------- 95 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTT-------
T ss_pred CCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccC-HHH-------
Confidence 4566777777776655443 45666777777777777776654 44567777777777777777662 221
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|++++|++++++. ..+..+++|++|++++|++..
T Consensus 96 ---------~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 96 ---------FDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ---------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred ---------hhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 4566778888888887776642 445677788888888887764
No 154
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=120.77 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=109.0
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
-++++++++.++. ++. .-.++|++|++++|.++.++. .+..+++|+.|+|++|.++..++ ..+..+++|++
T Consensus 12 ~~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n~i~~ip~----~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLKV--LPK--GIPRDVTELYLDGNQFTLVPK----ELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLT 82 (193)
T ss_dssp TTEEECTTSCCSS--CCS--CCCTTCCEEECCSSCCCSCCG----GGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCEEEcCCCCCCc--CCC--CCCCCCCEEECCCCcCchhHH----HhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCE
Confidence 3678888888763 332 124689999999999986652 68889999999999999999876 67889999999
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|+|++|.|+.+. +.. +..+++|++|+|++|+|+.++. ..+..+++|+.|++++|++.-++
T Consensus 83 L~Ls~N~l~~i~-~~~----------------f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 83 LILSYNRLRCIP-PRT----------------FDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp EECCSSCCCBCC-TTT----------------TTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSG
T ss_pred EECCCCccCEeC-HHH----------------hCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCC
Confidence 999999999984 333 6788999999999999998753 56888999999999999997644
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=2.3e-13 Score=114.27 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=89.4
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016362 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L 264 (390)
+.++++++++...+..+. ++|++|++++|.++. ..+..+..+++|++|++++|.++++++. .+..+++|+.|+|
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDG---VFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChh---HccCCCccCEEEC
Confidence 455555555554433222 456666666666553 1222335667788888888877766544 4677888999999
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016362 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 338 (390)
++|.+++.++ ..+..+++|++|++++|.++.+ |... +..+++|++|+|++|.++..
T Consensus 84 ~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~--~~~~---------------~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPN-GVFDKLTQLKELALDTNQLKSV--PDGI---------------FDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC--CTTT---------------TTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCH-HHhhCCcccCEEECcCCcceEe--CHHH---------------hcCCcccCEEEecCCCeecc
Confidence 9998888765 4567888999999999998876 3321 46678999999999988864
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=7.1e-15 Score=138.31 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=109.2
Q ss_pred cCcccEEECCCCcCCCh--HHHHHHHhcC-CCCCEEEccCCCCCCccC-CC-CCCCCccEEEeecccCCHHHHHHHHh--
Q 016362 155 VTNLKELDLTGNLLSDW--KDIGAFGEQL-PALAVLNLSNNLMSKEVT-GL-PQLKSIRILVLNCTGVNWMQVEILKH-- 227 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~--~~~~~~l~~l-~~L~~L~ls~n~l~~~~~-~~-~~l~~L~~L~L~~n~l~~~~~~~~~~-- 227 (390)
+++|+.|+|++|.++.. ..+...+... ++|+.|++++|.++.... .+ ..+++|+.|+|++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 47788888888888752 2333333333 578888888887754322 22 23567788888888887654444322
Q ss_pred --cCCcccEEeccCCCccccCCC-CCCccCCCCCccEEEcCCCCCCCchh--h-hhcCCCCCcCeEecCCCccccccCCC
Q 016362 228 --SLPALEELHLMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPN 301 (390)
Q Consensus 228 --~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 301 (390)
..++|++|++++|.+++.... ++..+..+++|++|+|++|.+.+... + ..+..+++|++|+|++|.|++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346678888888777653211 11123456677777777777765331 1 33455667777777777777653211
Q ss_pred CCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC---CCC--CcEEE--ccCCCCC
Q 016362 302 NDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS---FPK--LMDIR--LSENPVS 361 (390)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~---l~~--L~~L~--l~~n~l~ 361 (390)
.... +..+++|++|+|++|.|++.. ...+.. ... |+.+. +..|.+.
T Consensus 231 l~~~-------------L~~~~~L~~L~Ls~N~i~~~g-~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARA-------------AREHPSLELLHLYFNELSSEG-RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHH-------------HHHCSSCCEEECTTSSCCHHH-HHHHHHCC------CEEECCCC----CH
T ss_pred HHHH-------------HHhCCCCCEEeccCCCCCHHH-HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 1111 224567777777777777542 223322 121 55665 5555554
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=1.9e-14 Score=133.43 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=143.9
Q ss_pred cccccEeecCCcccC--------------------CCCcchhhh--------cCcccEEECCCCcCCChHHHHHHHhcCC
Q 016362 131 FEELTSAALPYLGVS--------------------SPGANIGTI--------VTNLKELDLTGNLLSDWKDIGAFGEQLP 182 (390)
Q Consensus 131 l~~L~~L~l~~~~i~--------------------~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~~l~~l~ 182 (390)
+++|+.|+|++|.+. .++...+.. |++|+.|+|.+ .++.+. ..+|..|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~--~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE--DAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC--TTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchh--HHHhhcCc
Confidence 888999999999988 223334445 68888888887 666432 24577888
Q ss_pred CCCEEEccCCCCCCccC-CCCCCCCccEEEeeccc---------------------------------------------
Q 016362 183 ALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTG--------------------------------------------- 216 (390)
Q Consensus 183 ~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~--------------------------------------------- 216 (390)
+|+.|+++.|.+....+ .|..+.++..+.+..+.
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 88888888888775555 46677667666655411
Q ss_pred --------CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC-eE
Q 016362 217 --------VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE-QL 287 (390)
Q Consensus 217 --------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~-~L 287 (390)
+.......+...+++|+++++++|.++.++.. .+.++.+|+.++|.+| ++..+. ..+..+++|+ .+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l 279 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTL 279 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEE
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEE
Confidence 11112222223488899999999888888765 6888889999999887 776665 6788899998 99
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEc
Q 016362 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRL 355 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l 355 (390)
.+.+ .++.+. +.. |..|++|++|++++|+++.++. ..|..+++|+.|+.
T Consensus 280 ~l~~-~l~~I~-~~a----------------F~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIE-FGA----------------FMGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEEC-TTT----------------TTTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEEC
T ss_pred EEcc-cceEEc-hhh----------------hhCCccCCEEEeCCCccCccch-hhhcCCcchhhhcc
Confidence 9988 777774 222 7888999999999999988753 67888999988864
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=2e-14 Score=135.28 Aligned_cols=169 Identities=18% Similarity=0.080 Sum_probs=87.5
Q ss_pred CCCCCEEEccCCCCCCccC-C----CC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC-CCCcc
Q 016362 181 LPALAVLNLSNNLMSKEVT-G----LP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV-SSPIV 253 (390)
Q Consensus 181 l~~L~~L~ls~n~l~~~~~-~----~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 253 (390)
+++|+.|++++|.++.... . +. ..++|++|+|++|.++...+..+...+++|++|++++|.+++.... +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3556666666666653221 1 11 2246666666666666555555555556666666666666543211 00011
Q ss_pred -CCCCCccEEEcCCCCCCCchh--h-hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEe
Q 016362 254 -QGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLL 329 (390)
Q Consensus 254 -~~l~~L~~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 329 (390)
...++|++|+|++|.+++... + ..+..+++|++|+|++|.|++.+....... +..+++|++|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-------------L~~~~~L~~L~ 217 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-------------LDRNRQLQELN 217 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-------------GGGCSCCCEEE
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-------------HhcCCCcCeEE
Confidence 234566666666666654221 1 223456666666666666665431111000 23345666666
Q ss_pred CCCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016362 330 LGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 330 Ls~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|++|.|++... ...+..+++|++|+|++|+|++
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 66666664321 1233445666666666666653
No 159
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=2.4e-13 Score=138.83 Aligned_cols=177 Identities=19% Similarity=0.138 Sum_probs=83.2
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCE-----EEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCC
Q 016362 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAV-----LNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLP 230 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~-----L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 230 (390)
+.++.|+|.+|.+.. .+..+.....|.. ++++.|++......+..+..|+.|+|++|.+. .++..+..++
T Consensus 173 ~~~~~l~L~~n~~~~---~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE---ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCC
T ss_pred CccceEEeeCCCCCc---chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCChhhcCCC
Confidence 567778887777664 2332222222222 22233333322224566777777777777765 2333334677
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
+|++|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ ..++.+++|++|+|++|.|+.+ |..
T Consensus 248 ~L~~L~Ls~N~l~~lp----~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~l--p~~-------- 311 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELP----AEIKNLSNLRVLDLSHNRLTSLP--AELGSCFQLKYFYFFDNMVTTL--PWE-------- 311 (727)
T ss_dssp SCSCCBCTTSCCSCCC----GGGGGGTTCCEEECTTSCCSSCC--SSGGGGTTCSEEECCSSCCCCC--CSS--------
T ss_pred CCCEEEeeCCcCcccC----hhhhCCCCCCEEeCcCCcCCccC--hhhcCCCCCCEEECCCCCCCcc--Chh--------
Confidence 7777777777777433 24666777777777777777554 3466677777777777777655 544
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCC-CCCcEEEccCCCCCC
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSF-PKLMDIRLSENPVSD 362 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l-~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|+|++|.|++.. +..+..+ ..+..|+|++|.+..
T Consensus 312 --------~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 312 --------FGNLCNLQFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp --------TTSCTTCCCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCCCCC
T ss_pred --------hhcCCCccEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCcccC
Confidence 556677777777777777642 2333322 112235677776663
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=4.1e-12 Score=105.87 Aligned_cols=109 Identities=22% Similarity=0.305 Sum_probs=88.4
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016362 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~ 310 (390)
..+++++++|.++.++.. + .++|+.|+|++|.|++.++ ..+..+++|++|+|++|+|+.+ +...
T Consensus 10 ~~~~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l--~~~~------- 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG----I--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVL--PAGV------- 73 (170)
T ss_dssp ETTEEECTTSCCSSCCSC----C--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCC--CTTT-------
T ss_pred CCCEEEeCCCCcCccCcc----C--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCcc--Chhh-------
Confidence 357889999998887643 2 2788999999999998865 5688899999999999999987 3321
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+..+++|++|+|++|+|++++. ..+..+++|++|+|++|++.-++
T Consensus 74 --------f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 74 --------FDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp --------TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred --------ccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence 5678999999999999998753 56888999999999999998644
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=5.4e-15 Score=126.73 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=113.3
Q ss_pred HHHhccccccEeecCCcccCCCCcc------hhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016362 126 DKFSKFEELTSAALPYLGVSSPGAN------IGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 199 (390)
..+.....++.++++.+.+.+..+. ....+++|++|++++|.+.. +| .+..+++|++|++++|.++..+.
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~l~~l~~ 87 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNLIKKIEN 87 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEEECSCSS
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCCcccccc
Confidence 4456667777777777777655442 33345888888888888876 34 56778888888888888875443
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchh-----
Q 016362 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE----- 274 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----- 274 (390)
.+..+++|++|++++|.++. ++. +..+++|++|++++|.++..+.. ..+..+++|+.|++++|.+.+..+
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC--HHH-HHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred hhhcCCcCCEEECcCCcCCc--CCc-cccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccccccccch
Confidence 44556788888888888875 343 46778888898888888765420 146678888999999888765422
Q ss_pred ----hhhcCCCCCcCeEecCCCccccc
Q 016362 275 ----ILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 275 ----~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
...+..+++|+.|+ +|.++..
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 02366788999887 6666654
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=6.6e-12 Score=105.06 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=83.6
Q ss_pred ccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhc
Q 016362 232 LEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (390)
Q Consensus 232 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~ 311 (390)
-+.+++++|.++.++.. +. ++|+.|+|++|.+++.++ ..+..+++|++|+|++|+|+.+ |...
T Consensus 14 ~~~l~~~~n~l~~iP~~----~~--~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i--~~~~-------- 76 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG----IP--TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAI--PTGV-------- 76 (174)
T ss_dssp SSEEECCSSCCSSCCSC----CC--TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTT--------
T ss_pred CcEEEeCCCCCCccCCC----cC--CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCcc--ChhH--------
Confidence 36788888888776543 22 678889999998888765 5678888899999999988887 3321
Q ss_pred ccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016362 312 HESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+..+++|++|+|++|+|+.++. ..+..+++|++|+|++|++...+
T Consensus 77 -------~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 77 -------FDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp -------TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred -------hCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccccc
Confidence 5678889999999999888753 45788889999999999887543
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=1.7e-11 Score=102.08 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016362 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|++|+|++|.++. ..+..+..+++|++|++++|.++++++. .+..+++|+.|+|++|.|+..++ ..+..+++|
T Consensus 30 ~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAG---VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChh---hccCCCCCCEEECCCCccCEeCH-HHhcCCCCC
Confidence 344444444444432 1122223444555555555555544432 34445555555555555555443 334555555
Q ss_pred CeEecCCCccc
Q 016362 285 EQLYLNKNNLN 295 (390)
Q Consensus 285 ~~L~L~~n~l~ 295 (390)
++|+|++|.++
T Consensus 105 ~~L~L~~N~~~ 115 (170)
T 3g39_A 105 THIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEeCCCCCC
Confidence 55555555554
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=2.3e-11 Score=101.75 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred EEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcC
Q 016362 186 VLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE 265 (390)
Q Consensus 186 ~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~ 265 (390)
.+++++|++...+..+. ++|++|+|++|.++. ..+..+..+++|++|+|++|.++++++. .+..+++|+.|+|+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTG---VFDKLTQLTQLDLN 89 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChh---HhCCcchhhEEECC
Confidence 44444444443332222 444445555444442 1122234455555555555555554433 34555666666666
Q ss_pred CCCCCCchhhhhcCCCCCcCeEecCCCcccc
Q 016362 266 DNCIAEWSEILKLCQIRSLEQLYLNKNNLNR 296 (390)
Q Consensus 266 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 296 (390)
+|.|+..++ ..+..+++|++|+|++|.+..
T Consensus 90 ~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPR-GAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCT-TTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCH-HHhccccCCCEEEeCCCCccc
Confidence 666665553 345556666666666666554
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=8e-11 Score=111.72 Aligned_cols=196 Identities=9% Similarity=0.085 Sum_probs=127.1
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016362 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
.|+.+.+.. .+..++...+..|++|+.+++.+|.++.+ +...-.+.+|+.+.+..+ +..... .|..|++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I---~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKL---PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEE---CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEe---chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 577777765 56656655555667888888877776642 222223577777777744 544433 577777888888
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC-----CchhhhhcCCCCCcCe
Q 016362 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA-----EWSEILKLCQIRSLEQ 286 (390)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~l~~l~~L~~ 286 (390)
+..+ ++. .....+.. .+|+.+.+ .+.++.+... .+.++++|+.+++.+|.+. ..+. ..+..|++|+.
T Consensus 233 l~~~-l~~-I~~~aF~~-~~L~~i~l-p~~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~ 304 (401)
T 4fdw_A 233 IPEN-VST-IGQEAFRE-SGITTVKL-PNGVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLAR 304 (401)
T ss_dssp CCTT-CCE-ECTTTTTT-CCCSEEEE-ETTCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCE
T ss_pred cCCC-ccC-cccccccc-CCccEEEe-CCCccEEChh---HhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCe
Confidence 7664 221 11111223 56777777 3446666544 6777888888888877665 2333 56778888888
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+.|. +.++.+. ... |..|.+|+.|.|..| ++.+. ..+|..+ +|+.|++++|.+..
T Consensus 305 l~l~-~~i~~I~-~~a----------------F~~c~~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 305 FEIP-ESIRILG-QGL----------------LGGNRKVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECCC-TTCCEEC-TTT----------------TTTCCSCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCCB
T ss_pred EEeC-CceEEEh-hhh----------------hcCCCCccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCcc
Confidence 8888 4477663 222 677888999998655 66553 2567788 89999999887664
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=1.1e-10 Score=110.73 Aligned_cols=219 Identities=15% Similarity=0.092 Sum_probs=158.1
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
+|.++ +|+.+.+..+ +..++...+.. .+|+.+.+.. .+..+. ...|..|++|+.++++.|.++........+.+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~--~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLK--EDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEEC--SSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEeh--HHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 34554 6999998765 77666655555 5799999986 444322 25678899999999999999877664444789
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
|+.+.+..+ +.. .....+..+++|+.+.+..+ ++.+... .+.+ .+|+.+.+ .+.++..+. ..+..|++|+.
T Consensus 205 L~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~---aF~~-~~L~~i~l-p~~i~~I~~-~aF~~c~~L~~ 275 (401)
T 4fdw_A 205 IEEVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQE---AFRE-SGITTVKL-PNGVTNIAS-RAFYYCPELAE 275 (401)
T ss_dssp CSEEECCTT-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTT---TTTT-CCCSEEEE-ETTCCEECT-TTTTTCTTCCE
T ss_pred cCEEEeCCc-hhe-ehhhHhhCCCCCCEEecCCC-ccCcccc---cccc-CCccEEEe-CCCccEECh-hHhhCCCCCCE
Confidence 999999865 432 22334578899999999875 6666544 4555 78999999 455776665 67889999999
Q ss_pred EecCCCccc-----cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016362 287 LYLNKNNLN-----RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 287 L~L~~n~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+.+.+|.+. .+ +.. .|..|++|+.++|. +.++.+. ...|..|++|+.+.|..+ +.
T Consensus 276 l~l~~~~~~~~~~~~I--~~~---------------aF~~c~~L~~l~l~-~~i~~I~-~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMI--HPY---------------CLEGCPKLARFEIP-ESIRILG-QGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp EEEESSCCCCCTTCEE--CTT---------------TTTTCTTCCEECCC-TTCCEEC-TTTTTTCCSCCEEEECTT-CC
T ss_pred EEeCCccccCCcccEE--CHH---------------HhhCCccCCeEEeC-CceEEEh-hhhhcCCCCccEEEECcc-cc
Confidence 999998776 34 222 17889999999999 4577664 367889999999999665 54
Q ss_pred CCCCcchhhhhhhhhcCCceEecCcc
Q 016362 362 DPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 362 ~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
. +... ++..+ +|+.++++.
T Consensus 336 ~-----I~~~-aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 336 Q-----INFS-AFNNT-GIKEVKVEG 354 (401)
T ss_dssp E-----ECTT-SSSSS-CCCEEEECC
T ss_pred E-----EcHH-hCCCC-CCCEEEEcC
Confidence 2 2221 35666 787776653
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1.4e-10 Score=108.16 Aligned_cols=211 Identities=17% Similarity=0.153 Sum_probs=136.4
Q ss_pred cccccEeecCCcccCC-CC-c------chhhhcCcccEEECCCCcCCC----h---HHHHHHHhcCCCCCEEEccCCCCC
Q 016362 131 FEELTSAALPYLGVSS-PG-A------NIGTIVTNLKELDLTGNLLSD----W---KDIGAFGEQLPALAVLNLSNNLMS 195 (390)
Q Consensus 131 l~~L~~L~l~~~~i~~-~~-~------~~~~~~~~L~~L~L~~n~l~~----~---~~~~~~l~~l~~L~~L~ls~n~l~ 195 (390)
...++.|.+......+ .. . .....+++|+.|.+.+..... | ..+...+..+|+|+.|.+++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456777777655431 11 0 112235899999887653311 1 135677889999999999987311
Q ss_pred CccCCCCCCCCccEEEeecccCCHHHHHHHH-hcCCcccEEeccC--CCccccC--CCCCCcc--CCCCCccEEEcCCCC
Q 016362 196 KEVTGLPQLKSIRILVLNCTGVNWMQVEILK-HSLPALEELHLMG--NSISEIT--PVSSPIV--QGFDNLQLLNLEDNC 268 (390)
Q Consensus 196 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~--n~l~~~~--~~~~~~l--~~l~~L~~L~L~~n~ 268 (390)
.. +.+ .+++|++|.+..|.++...+..+. ..+|+|++|+|+. |...+.. ..+...+ ..+++|+.|+|.+|.
T Consensus 186 ~l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SI-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BC-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred ee-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 12 233 378999999999999876666654 3799999999853 2211110 0001112 357899999999998
Q ss_pred CCCchh--hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC
Q 016362 269 IAEWSE--ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS 346 (390)
Q Consensus 269 l~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~ 346 (390)
+.+... +.....+++|++|+|+.|.|++.+..... .++..+++|+.|+|++|.|++. ....+..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~-------------~~L~~l~~L~~L~L~~n~i~d~-~~~~l~~ 329 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL-------------DHVDKIKHLKFINMKYNYLSDE-MKKELQK 329 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH-------------TTHHHHTTCSEEECCSBBCCHH-HHHHHHH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH-------------hhcccCCcceEEECCCCcCCHH-HHHHHHH
Confidence 875332 12224688999999999999885421110 0124578999999999999874 3445553
Q ss_pred -CCCCcEEEccCCC
Q 016362 347 -FPKLMDIRLSENP 359 (390)
Q Consensus 347 -l~~L~~L~l~~n~ 359 (390)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 4 4678999987
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=7.7e-10 Score=102.92 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=43.3
Q ss_pred EEeecc-cCCHHHHHHHHhcCCcccEEeccC-CCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016362 210 LVLNCT-GVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 210 L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++++++ +++ .++. +..+.+|++|+|++ |.++++++. .+..+++|+.|+|++|.|++.++ ..+..+++|+.|
T Consensus 13 v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L 85 (347)
T 2ifg_A 13 LRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRL 85 (347)
T ss_dssp EECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEE
T ss_pred EEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCCccceeCH-HHhcCCcCCCEE
Confidence 455554 454 2333 45555566666654 555555433 45555556666666665555544 345555556666
Q ss_pred ecCCCccccc
Q 016362 288 YLNKNNLNRI 297 (390)
Q Consensus 288 ~L~~n~l~~~ 297 (390)
+|++|+|+.+
T Consensus 86 ~l~~N~l~~~ 95 (347)
T 2ifg_A 86 NLSFNALESL 95 (347)
T ss_dssp ECCSSCCSCC
T ss_pred eCCCCcccee
Confidence 6666655554
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.03 E-value=5.8e-11 Score=105.50 Aligned_cols=117 Identities=24% Similarity=0.217 Sum_probs=83.7
Q ss_pred CCccE--EEcCCCCCCCchhh-hh-cCCCCCcCeEecCCCccccccC-CCCCchhhhhhcccccccCCCCCCCCCEEeCC
Q 016362 257 DNLQL--LNLEDNCIAEWSEI-LK-LCQIRSLEQLYLNKNNLNRIYY-PNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (390)
Q Consensus 257 ~~L~~--L~L~~n~l~~~~~~-~~-l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls 331 (390)
+.|.. ++++.|....+... .. -.++++|+.|+|++|+|+++.. +.. +..+++|+.|+|+
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~----------------~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI----------------VQKAPNLKILNLS 204 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTH----------------HHHSTTCCEEECT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhH----------------HhhCCCCCEEECC
Confidence 44444 55666654333321 11 1357899999999999988631 222 3568999999999
Q ss_pred CCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCc-chhhhhhhhhcCCceEecCcccCC
Q 016362 332 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRG-GISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 332 ~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
+|+|+++..++.+..+ +|++|+|++||+...... ...+..+++.+|+|+.||+..|++
T Consensus 205 ~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 205 GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 9999998766666666 999999999999852211 123445789999999999999875
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.8e-10 Score=107.17 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=68.2
Q ss_pred EEEccCC-CCCCccCCCCCCCCccEEEeec-ccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEE
Q 016362 186 VLNLSNN-LMSKEVTGLPQLKSIRILVLNC-TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLN 263 (390)
Q Consensus 186 ~L~ls~n-~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~ 263 (390)
.++++++ +++..+. +..+.+|+.|+|++ |.+.. ..+..+..+++|++|+|++|.++++++. .+..+++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPD---AFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTT---GGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHH---HhcCCcCCCEEe
Confidence 4566666 6766555 76777777777775 77664 2223346677777777777777776654 566777777777
Q ss_pred cCCCCCCCchhhhhcCCCCCcCeEecCCCcccc
Q 016362 264 LEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNR 296 (390)
Q Consensus 264 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 296 (390)
|++|.|+..++ ..+..++ |+.|+|.+|.+..
T Consensus 87 l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSW-KTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCH-HHcccCC-ceEEEeeCCCccC
Confidence 77777776654 3344444 7777777777654
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.5e-09 Score=101.28 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=112.1
Q ss_pred CcccEEECCCCcCCC------hHHHHHHHhcCCCCCEEEccCCCCCC-----c----c-CCCCCCCCccEEEeeccc-CC
Q 016362 156 TNLKELDLTGNLLSD------WKDIGAFGEQLPALAVLNLSNNLMSK-----E----V-TGLPQLKSIRILVLNCTG-VN 218 (390)
Q Consensus 156 ~~L~~L~L~~n~l~~------~~~~~~~l~~l~~L~~L~ls~n~l~~-----~----~-~~~~~l~~L~~L~L~~n~-l~ 218 (390)
..++.|.+......+ +..+...+..+++|+.|.+....... . . +-+..+++|+.|.+++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 456777777554431 12233445678999999997653321 0 1 113467889999998773 22
Q ss_pred HHHHHHHHhcCCcccEEeccCCCccccCCCCCCcc--CCCCCccEEEcCC--CCC-CC--chhh-hhc--CCCCCcCeEe
Q 016362 219 WMQVEILKHSLPALEELHLMGNSISEITPVSSPIV--QGFDNLQLLNLED--NCI-AE--WSEI-LKL--CQIRSLEQLY 288 (390)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~l~~L~~L~L~~--n~l-~~--~~~~-~~l--~~l~~L~~L~ 288 (390)
++.+ .+++|++|++..|.++..... .+ ..+++|+.|+|+. |.. .. ...+ ..+ ..+|+|++|+
T Consensus 187 ---l~~~--~~~~L~~L~L~~~~l~~~~l~---~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 187 ---IGKK--PRPNLKSLEIISGGLPDSVVE---DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp ---CCSC--BCTTCSEEEEECSBCCHHHHH---HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred ---eccc--cCCCCcEEEEecCCCChHHHH---HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence 1111 377899999988877643211 12 2578888888853 211 11 1111 122 3478999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016362 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|++|.+++........ ...+++|++|+|+.|.+++... ...+..+++|+.|+|++|.|++
T Consensus 259 L~~~~i~~~~~~~la~--------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLE--------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp EESCTTHHHHHHHHHH--------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCCchHHHHHHHh--------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 9888887542111000 1246889999999998887421 1233457899999999998874
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=7.5e-09 Score=87.20 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=84.7
Q ss_pred hHHHHHHhccccccEeecCCc-ccCCCCc-chh---hhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEccCCCC
Q 016362 122 DKIQDKFSKFEELTSAALPYL-GVSSPGA-NIG---TIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 122 ~~i~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~---~~~~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~ls~n~l 194 (390)
+.+...+...+.|++|+|++| .+...+. .+. ...++|++|+|++|.+.+ ...+...+...+.|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 456677888889999999988 8776443 222 224788899999988875 334566677778888888888888
Q ss_pred CCcc-----CCCCCCCCccEEEe--ecccCCHHHH---HHHHhcCCcccEEeccCCCcc
Q 016362 195 SKEV-----TGLPQLKSIRILVL--NCTGVNWMQV---EILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 195 ~~~~-----~~~~~l~~L~~L~L--~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~ 243 (390)
.... ..+...++|++|+| ++|.+..... ...+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6531 24556677888888 7788876543 333455567777777777664
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=1.4e-09 Score=91.73 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=94.3
Q ss_pred HHHHHHhcCCcccEEeccCC-CccccCCC-CCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccc
Q 016362 221 QVEILKHSLPALEELHLMGN-SISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 221 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~ 295 (390)
.+...+...+.|++|+|++| .+...... +...+...++|++|+|++|.+.+.... ..+...++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 46667788999999999999 88753211 112456678999999999999864421 34556789999999999999
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeC--CCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016362 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL--GNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L--s~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+.+....... +...++|++|+| ++|.|++... .+.+...++|++|+|++|.+..
T Consensus 107 ~~g~~~l~~~-------------L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 107 GSGILALVEA-------------LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHHG-------------GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHH-------------HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 8643222111 445688999999 8899986432 2456678999999999999864
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.78 E-value=3.3e-09 Score=87.61 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCC----CCCCCEEeCC
Q 016362 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLP----FQNLCCLLLG 331 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~----l~~L~~L~Ls 331 (390)
..|+.||+++|.+++.. +..+..+++|++|+|++|. |++.+... +.. +++|++|+|+
T Consensus 61 ~~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~-----------------L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLER-----------------LSQLENLQKSMLEMEII 122 (176)
T ss_dssp CCEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHH-----------------HHTCHHHHHHCCEEEEE
T ss_pred ceEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHH-----------------HHhcccccCCCCEEEcC
Confidence 47999999999987755 3667899999999999995 88764222 222 3579999999
Q ss_pred CC-CCCCchhhhhccCCCCCcEEEccCCC-CCCCCCcchhhhhhhhhcCCceE
Q 016362 332 NN-MIEDLASIDSLDSFPKLMDIRLSENP-VSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 332 ~N-~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
+| +|++. .+..+..+++|++|++++|+ +++ .++.....-..+|++++
T Consensus 123 ~C~~ITD~-Gl~~L~~~~~L~~L~L~~c~~Itd---~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 123 SCGNVTDK-GIIALHHFRNLKYLFLSDLPGVKE---KEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp SCTTCCHH-HHHHGGGCTTCCEEEEESCTTCCC---HHHHHHHHHHHCTTCEE
T ss_pred CCCcCCHH-HHHHHhcCCCCCEEECCCCCCCCc---hHHHHHHHHHHCCCcEE
Confidence 99 69985 45678899999999999998 553 22334444677888865
No 175
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=3.1e-08 Score=87.86 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=46.0
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCCCCccEEEeecccCCH------HHHHHHH
Q 016362 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQLKSIRILVLNCTGVNW------MQVEILK 226 (390)
Q Consensus 155 ~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~L~L~~n~l~~------~~~~~~~ 226 (390)
+++|+.|+|++|.++++..++..+..+++|+.|+|++|++++... .+..+ +|++|+|++|.+.. .-....+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 466666666666666655555556666666666666666664411 22223 66666666666542 1122344
Q ss_pred hcCCcccEEe
Q 016362 227 HSLPALEELH 236 (390)
Q Consensus 227 ~~l~~L~~L~ 236 (390)
..+|+|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5666666664
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=4.4e-08 Score=80.88 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC-CCCCchhhhhccCC----CCCcEEEcc
Q 016362 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN-MIEDLASIDSLDSF----PKLMDIRLS 356 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~l~~l----~~L~~L~l~ 356 (390)
.+|++|++++|.|++.+... +..+++|++|+|++| .|++. .+..++.+ ++|++|+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-----------------L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-----------------MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-----------------GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEE
T ss_pred ceEeEEeCcCCCccHHHHHH-----------------hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcC
Confidence 47999999999998876433 467999999999999 68886 45677764 589999999
Q ss_pred CCC-CCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016362 357 ENP-VSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 357 ~n~-l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
+|+ |++ .++.. ++++++|+.|+++.+.
T Consensus 123 ~C~~ITD---~Gl~~---L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 123 SCGNVTD---KGIIA---LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp SCTTCCH---HHHHH---GGGCTTCCEEEEESCT
T ss_pred CCCcCCH---HHHHH---HhcCCCCCEEECCCCC
Confidence 997 775 23433 7889999999998753
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=3.2e-07 Score=86.71 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=117.6
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
++.+++.|+.+.+..+ +..++...+..|.+|+.+.+..+ +..+. ...+..+..|+.+.+..+... ..........
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~--~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR--DYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC--TTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC--chhhccccccceeecCCCceE-eehhhcccCC
Confidence 5788899999988754 34445555666788998888766 22211 134566777777766554221 1222334455
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC------------------CCCccCCCCCccEEEcCCCC
Q 016362 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV------------------SSPIVQGFDNLQLLNLEDNC 268 (390)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------~~~~l~~l~~L~~L~L~~n~ 268 (390)
|+.+.+...... .....+..+..|+.+.+..+... +... ....+..+.+|+.+.+..+
T Consensus 232 l~~i~ip~~~~~--i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 232 VKNIIIPDSFTE--LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCEEEECTTCCE--ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CceEEECCCcee--cccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 665555432111 00111234455555555443211 1111 0013445566666666543
Q ss_pred CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC
Q 016362 269 IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP 348 (390)
Q Consensus 269 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~ 348 (390)
++..+. ..+..+.+|+.+++..+ ++.++ ... |..|.+|+.+++..+ ++.+. ..+|..|+
T Consensus 308 i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~-~~a----------------F~~c~~L~~i~lp~~-l~~I~-~~aF~~C~ 366 (394)
T 4fs7_A 308 VKFIGE-EAFESCTSLVSIDLPYL-VEEIG-KRS----------------FRGCTSLSNINFPLS-LRKIG-ANAFQGCI 366 (394)
T ss_dssp CCEECT-TTTTTCTTCCEECCCTT-CCEEC-TTT----------------TTTCTTCCEECCCTT-CCEEC-TTTBTTCT
T ss_pred cceech-hhhcCCCCCCEEEeCCc-ccEEh-HHh----------------ccCCCCCCEEEECcc-ccEeh-HHHhhCCC
Confidence 444433 45666677777777543 55553 111 667777888877765 55543 24677777
Q ss_pred CCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEe
Q 016362 349 KLMDIRLSENPVSDPGRGGISRFAIIARLGKIKIL 383 (390)
Q Consensus 349 ~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~L 383 (390)
+|+.+++..+ +. .+.. .+..+++|+.+
T Consensus 367 ~L~~i~lp~~-~~-----~~~~--~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-----QYRY--DFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-----GGGG--GBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-----Ehhh--eecCCCCCcEE
Confidence 8888877654 22 1222 25666666653
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=7.4e-07 Score=84.21 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=125.3
Q ss_pred CcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHH
Q 016362 148 GANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILK 226 (390)
Q Consensus 148 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~ 226 (390)
+...+..|++|+.+.+..+... +. ...+..+.+|+.+.+..+ +..... .+..+..|+.+.+..+.... ....
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~~~-I~--~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~ 226 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSMET-LH--NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL---GDFA 226 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE-EC--TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE---CTTT
T ss_pred chhhhcccCCCcEEecCCccce-ec--cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe---ehhh
Confidence 3345566799999999766432 11 245778999999999876 443333 57788999988877654321 1112
Q ss_pred hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc---------------------CCCCCcC
Q 016362 227 HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL---------------------CQIRSLE 285 (390)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l---------------------~~l~~L~ 285 (390)
.....|+.+.+..+ ++.+... .+..+..|+.+.+..+... ... ..+ ..+.+|+
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~---~f~~~~~l~~~~~~~~~~~-i~~-~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKS---VFYGCTDLESISIQNNKLR-IGG-SLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSS---TTTTCSSCCEEEECCTTCE-ECS-CTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred cccCCCceEEECCC-ceecccc---cccccccceeEEcCCCcce-eec-cccccccccceeccCceeecccccccccccc
Confidence 34567888888653 3444332 4667778888887665322 111 223 3444555
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016362 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
.+.+..+ ++.++ . ..+..|.+|+.++|.++ ++.+. ..+|..|.+|+.+.+..+ +..
T Consensus 301 ~i~l~~~-i~~I~--~---------------~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~~-l~~--- 356 (394)
T 4fs7_A 301 EVKLLDS-VKFIG--E---------------EAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPLS-LRK--- 356 (394)
T ss_dssp EEEECTT-CCEEC--T---------------TTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCE---
T ss_pred ccccccc-cceec--h---------------hhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECcc-ccE---
Confidence 5555432 33332 1 12778899999999755 66653 257889999999999876 543
Q ss_pred cchhhhhhhhhcCCceEecCc
Q 016362 366 GGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 366 ~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+... ++..|++|+.+++.
T Consensus 357 --I~~~-aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 --IGAN-AFQGCINLKKVELP 374 (394)
T ss_dssp --ECTT-TBTTCTTCCEEEEE
T ss_pred --ehHH-HhhCCCCCCEEEEC
Confidence 3222 37788999888764
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.19 E-value=5e-06 Score=78.49 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=38.9
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
+|..+..|+.+.+..+ +..++...+..|.+|+.+.+..+... +. ...+..+..|+.+.+..+ +............
T Consensus 109 aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~-I~--~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~ 183 (394)
T 4gt6_A 109 AFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTS-VA--DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTA 183 (394)
T ss_dssp TTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCE-EC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCC
T ss_pred hchhcccceeeccCCc-cceehhhhhhhhcccccccccceeee-ec--ccceecccccccccccce-eeEeccccccccc
Confidence 3455555555555432 33333334444566666666543211 11 133456666777766543 3222222223345
Q ss_pred ccEEEeec
Q 016362 207 IRILVLNC 214 (390)
Q Consensus 207 L~~L~L~~ 214 (390)
|+.+.+..
T Consensus 184 l~~i~ip~ 191 (394)
T 4gt6_A 184 LTQIHIPA 191 (394)
T ss_dssp CSEEEECT
T ss_pred eeEEEECC
Confidence 66665543
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.16 E-value=9.9e-07 Score=74.15 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=85.3
Q ss_pred HHHHHHhcCCcccEEeccCC-CccccCC-CCCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccc
Q 016362 221 QVEILKHSLPALEELHLMGN-SISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 221 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~ 295 (390)
.+..+...-+.|++|+|++| .+..... .+...+..-+.|+.|+|++|.|.+.... ..+...+.|++|+|+.|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666677788999999885 7654321 0112345567899999999998754431 34556688999999999998
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC---CCCCc---hhhhhccCCCCCcEEEccCCCCC
Q 016362 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN---MIEDL---ASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N---~i~~~---~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+.+.....+. +.....|++|+|++| .+.+. ...+.+...+.|+.|+++.|.+.
T Consensus 112 ~~Ga~ala~a-------------L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRS-------------TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHH-------------TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHH-------------HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 7654332222 344567999999876 44432 12256677889999999877653
No 181
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=7.7e-05 Score=70.25 Aligned_cols=219 Identities=13% Similarity=0.166 Sum_probs=118.1
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016362 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+..|+.+.+.. .+..++...+..|.+|+.+.+..+. ..+.. ..+ ...+|+.+.+..+...-....+..+..
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~~-~~I~~--~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDSV-TAIEE--RAF-TGTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECT--TTT-TTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhcccccccccc-eeeeecccceeccccccccccccee-eEecc--ccc-cccceeEEEECCcccccccchhhhccc
Confidence 456777888887754 3344444445556778888776542 21111 122 234677776654322111113444444
Q ss_pred ccEEEeecccCCHH-----------------------------------HHHHHHhcCCcccEEeccCCCccccCCCCCC
Q 016362 207 IRILVLNCTGVNWM-----------------------------------QVEILKHSLPALEELHLMGNSISEITPVSSP 251 (390)
Q Consensus 207 L~~L~L~~n~l~~~-----------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 251 (390)
++............ .-...+..+..|+.+.+..+. ..+...
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~--- 282 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTG--- 282 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTT---
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCc---
Confidence 44443322111000 001223456667777765443 233322
Q ss_pred ccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCC
Q 016362 252 IVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (390)
Q Consensus 252 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls 331 (390)
.+.++..|+.+.+. +.++..+. ..+..+.+|+.+.+..+ ++.++ ... |..|.+|+.+.+.
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~-~~a----------------F~~C~~L~~i~ip 342 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQIL-DDA----------------FAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEEC-TTT----------------TTTCTTCCEEEEC
T ss_pred ccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEeh-HhH----------------hhCCCCCCEEEEC
Confidence 46667778888775 34555544 56777888888888653 55553 111 6778888888886
Q ss_pred CCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 332 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 332 ~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
.+ ++.+.. .+|..|.+|+.+++.++... . . .+..+..|+.+.+
T Consensus 343 ~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~------~-~--~~~~~~~L~~i~i 385 (394)
T 4gt6_A 343 SS-VTKIPE-SAFSNCTALNNIEYSGSRSQ------W-N--AISTDSGLQNLPV 385 (394)
T ss_dssp TT-CCBCCG-GGGTTCTTCCEEEESSCHHH------H-H--TCBCCCCC-----
T ss_pred cc-cCEEhH-hHhhCCCCCCEEEECCceee------h-h--hhhccCCCCEEEe
Confidence 54 555532 57888888888888876432 1 1 1445566666554
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=3.2e-05 Score=64.96 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHhccccccEeecCCc-ccCCCCc-----chhhhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEccCCCC
Q 016362 123 KIQDKFSKFEELTSAALPYL-GVSSPGA-----NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 123 ~i~~~~~~l~~L~~L~l~~~-~i~~~~~-----~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~ls~n~l 194 (390)
.+...+.+-+.|++|+|+++ .|...+. .+... +.|+.|+|++|.+.+ ...+...+..-+.|++|+|++|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34555566677778887774 6654332 22222 567777777777764 234455566666777777777766
Q ss_pred CCccC-----CCCCCCCccEEEeecc---cCCHH---HHHHHHhcCCcccEEeccCCC
Q 016362 195 SKEVT-----GLPQLKSIRILVLNCT---GVNWM---QVEILKHSLPALEELHLMGNS 241 (390)
Q Consensus 195 ~~~~~-----~~~~l~~L~~L~L~~n---~l~~~---~~~~~~~~l~~L~~L~l~~n~ 241 (390)
..... .+..-..|++|+|+++ .+... .+...+..-+.|+.|+++.|.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 54321 2334455666666543 33332 233334455566666665544
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.82 E-value=9.6e-05 Score=69.10 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016362 319 YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 319 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+..|.+|+.+.+.++.++.+.. ..|..|.+|+.+.|..+ +.. +.. .++..|.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~-----I~~-~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKT-----IQV-YAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCE-----ECT-TTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehh-hhhcCCCCCCEEEcCcc-ccE-----EHH-HHhhCCCCCCEEEE
Confidence 4556667777666666665432 45666666776666533 321 211 12455555655544
No 184
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.32 E-value=0.0007 Score=63.17 Aligned_cols=131 Identities=13% Similarity=0.220 Sum_probs=85.1
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016362 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+..+..|+.+.+..+--. .....+..+..|+.+.+..+ ++.+... .+..+..|+.+.+..+ +...+. ..+..
T Consensus 213 f~~~~~l~~i~~~~~~~~--i~~~~f~~~~~L~~i~lp~~-v~~I~~~---aF~~~~~l~~i~l~~~-i~~i~~-~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTT--LGDGAFYGMKALDEIAIPKN-VTSIGSF---LLQNCTALKTLNFYAK-VKTVPY-LLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTTCCE--ECTTTTTTCSSCCEEEECTT-CCEECTT---TTTTCTTCCEEEECCC-CSEECT-TTTTT
T ss_pred cccccccceeeeccceeE--EccccccCCccceEEEcCCC-ccEeCcc---ccceeehhcccccccc-ceeccc-ccccc
Confidence 345566666666543211 11222356677888877655 5555443 5667778888888654 554443 56778
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+++|+.+.+.++.++.++ ... |..|.+|+.+.|..+ ++.+.. .+|..|.+|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~-~~a----------------F~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLE-PRV----------------FMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEEC-TTT----------------TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceeh-hhh----------------hcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc
Confidence 888999998888888774 222 778889999998755 555432 46778888888887654
No 185
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00076 Score=52.69 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=47.9
Q ss_pred CeEecCCCccc--cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016362 285 EQLYLNKNNLN--RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 285 ~~L~L~~n~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
..++.+++.++ .+ |.. -.++|++|+|++|+|+.++ ...|..+++|+.|+|++||+.=
T Consensus 11 ~~v~Cs~~~L~~~~v--P~~------------------lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL--PTA------------------FPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTS--CSC------------------CCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccC--CCC------------------CCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCeec
Confidence 47888888888 55 543 1257999999999999985 3678899999999999999975
Q ss_pred CC
Q 016362 363 PG 364 (390)
Q Consensus 363 ~~ 364 (390)
++
T Consensus 70 dC 71 (130)
T 3rfe_A 70 DC 71 (130)
T ss_dssp SG
T ss_pred cC
Confidence 54
No 186
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0059 Score=47.53 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=31.9
Q ss_pred EEeccCCCcc--ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccc
Q 016362 234 ELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 234 ~L~l~~n~l~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 295 (390)
.++.+++.++ .++..++ .+|+.|+|++|.|+.++. ..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp------~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP------VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC------TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC------cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 4555566555 4432211 356677777777666654 45556666777777766543
No 187
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=36.09 E-value=11 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSG 38 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~ 38 (390)
++.|+|||||++.+.. -.|-+|--|.+.|..|
T Consensus 34 ~prF~vGDrVrvr~~~-p~gHtRlP~YvRGk~G 65 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLP-DLFYTRTMTYTRGATG 65 (126)
T ss_dssp SCSSCTTCEEEECCCC-CSSCCSSCGGGTTCEE
T ss_pred CCccCCCCEEEEccCC-CCCceeccHHhCCCEE
Confidence 5889999999986432 2244444444444433
No 188
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.07 E-value=67 Score=22.87 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=30.4
Q ss_pred CccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016362 241 SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 241 ~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
.++.+... .+.++.+|+.+.+-.+ ++.... ..+..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~---aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKS---LFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSC---TTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred ccCEecHH---HhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence 34444433 5677788888877654 444443 56777888888887664
No 189
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.39 E-value=78 Score=22.48 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.2
Q ss_pred CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016362 319 YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 319 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
|..|.+|+.+.+-.+ ++.+.. ..|..|.+|+.+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence 778899999999876 444322 46889999999999764
No 190
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=25.03 E-value=1.2e+02 Score=21.23 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCCCCCEEEeC---------CCceeeEEEEEeeecCCCCCeEEEEEecC
Q 016362 8 SYKLGQRVHSA---------NDARRIGTVKYVGEVQGYSGTWLGVDWDY 47 (390)
Q Consensus 8 ~~~~g~~v~~~---------~~~~~~~tv~~~g~~~~~~~~w~Gv~~d~ 47 (390)
.++||.||.=. ++....|||. + ...+.|+.|.||.
T Consensus 21 ~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~--~---~~~~gwv~V~Wd~ 64 (89)
T 3dkm_A 21 YMVPGARVTRGLDWKWRDQDGSPQGEGTVT--G---ELHNGWIDVTWDA 64 (89)
T ss_dssp HCSTTCEEEECTTCCCTTTTSSTTCCEEEC--S---CCBTTEEEEEETT
T ss_pred ccccCcEEEeCCCCcccccCCCCCcccEEe--E---ecCCCeEEEEeCC
Confidence 36789999833 2222445553 2 2247899999994
No 191
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=24.91 E-value=58 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.9
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeee
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~ 32 (390)
.+|+|||+|.+++ ..|+|.-+|.
T Consensus 127 ~pf~vGD~I~i~~---~~G~V~~I~l 149 (285)
T 3udc_A 127 DQFSVGDYVTING---ISGTVEEIGL 149 (285)
T ss_dssp TSCCTTCEEEETT---EEEEEEEECS
T ss_pred CCccCCCEEEECC---EEEEEEEeee
Confidence 5799999999954 4499999883
No 192
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=24.54 E-value=26 Score=29.40 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=19.8
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSG 38 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~ 38 (390)
++.|+|||||++.... -.|-+|--|.+.|..|
T Consensus 136 ~~~F~vGd~Vrv~~~~-~~~HtR~P~Y~Rgk~G 167 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTAS-PKGHARRARYVRGKTG 167 (226)
T ss_dssp CCSCCTTCEEEECCCC-CSSCCCCCGGGTTCEE
T ss_pred CCcCCCCCeEEEccCC-CCCcccccHHhCCCeE
Confidence 5899999999986432 2244454444444443
No 193
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=22.88 E-value=27 Score=29.37 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=12.6
Q ss_pred CCCCCCCCCEEEeCC
Q 016362 5 NPESYKLGQRVHSAN 19 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~ 19 (390)
.++.|+|||||++.+
T Consensus 138 ~~~~F~vGd~Vrv~~ 152 (229)
T 3hht_B 138 ASPRFKVGERIKTKN 152 (229)
T ss_dssp SCCSCCTTCEEEECC
T ss_pred CCCCCCCCCEEEECC
Confidence 358899999999863
No 194
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.33 E-value=56 Score=28.43 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.0
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeee
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~ 32 (390)
.+|+|||+|.+++ ..|+|.-+|.
T Consensus 128 ~pf~vGD~I~i~g---~~G~V~~I~l 150 (286)
T 2vv5_A 128 RPFRAGEYVDLGG---VAGTVLSVQI 150 (286)
T ss_dssp CSSCTTCEEESSS---CEEEEEEECS
T ss_pred CCccCCCEEEECC---EEEEEEEEEe
Confidence 5799999999964 3499999983
No 195
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=22.32 E-value=28 Score=29.07 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.5
Q ss_pred CCCCCCCCCEEEeCC
Q 016362 5 NPESYKLGQRVHSAN 19 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~ 19 (390)
.++.|+|||||++.+
T Consensus 127 ~~~~F~vGd~Vrv~~ 141 (219)
T 3qyh_B 127 ARARFAVGDKVRVLN 141 (219)
T ss_dssp SCCCCCTTCEEEECC
T ss_pred CCCCCCCCCEEEECC
Confidence 358999999999863
No 196
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=21.46 E-value=44 Score=23.68 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=16.8
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQ 34 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~ 34 (390)
..-.||++|..... .-|||.|.+.
T Consensus 14 ~~~~IGs~ISLISk----~dIRYeGiL~ 37 (95)
T 2fb7_A 14 GTPYIGSKISLISK----AEIRYEGILY 37 (95)
T ss_dssp --CCSSEEEEEEET----TTEEEEEEEE
T ss_pred cCcccCCeEEEEEC----CCceEEEEEe
Confidence 45579999997654 3399999773
No 197
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=21.45 E-value=50 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=17.5
Q ss_pred CCCCCCCEEEeCCCceeeEEEEEeeecC
Q 016362 7 ESYKLGQRVHSANDARRIGTVKYVGEVQ 34 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~ 34 (390)
..-.||++|..... .-|||.|.+.
T Consensus 8 ~~~yIGs~iSLISk----~dIRYeGiL~ 31 (88)
T 2vxe_A 8 GLPELGSKISLISK----ADIRYEGRLY 31 (88)
T ss_dssp SSCCTTCEEEEEET----TTEEEEEEEE
T ss_pred CCcccCCeEEEEEC----CCceEEEEEe
Confidence 34469999997654 3399999773
No 198
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=21.37 E-value=21 Score=29.62 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=18.0
Q ss_pred CCCCCCCCEEEeCCCceeeEEEEEeeecCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGY 36 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~ 36 (390)
++.|+|||||++.... -.|-+|--|.+.|.
T Consensus 120 ~~~F~vGd~Vrv~~~~-~~gHtR~P~YvRGk 149 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEY-VPGHIRMPAYCRGR 149 (212)
T ss_dssp CCCCCTTCEEEECCCC-CSSCCSCCGGGTTC
T ss_pred CcccCCCCeEEEecCC-CCCcccccHHHCCC
Confidence 5889999999986432 12334444444443
No 199
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.46 E-value=40 Score=26.51 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEeCCCceeeEEEE----------EeeecCCCCCeEEEEEecCCC
Q 016362 6 PESYKLGQRVHSANDARRIGTVK----------YVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~----------~~g~~~~~~~~w~Gv~~d~~~ 49 (390)
|-.|++||.|.+.++ |+|. -.|.|.+..+.-+||......
T Consensus 31 m~~yk~GD~VdIk~~----~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v 80 (160)
T 2zkr_q 31 MRIYKKGDIVDIKGM----GTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV 80 (160)
T ss_dssp HCCCCTTCEEEECCC----TTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred HHHcCCCCEEEEEec----CCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence 367999999998765 2222 345667777778888877655
Done!