Query 016364
Match_columns 390
No_of_seqs 203 out of 337
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.8E-43 6E-48 292.6 -1.6 87 180-266 5-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 4.1E-42 1.4E-46 281.6 -3.6 83 182-264 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.6E-32 5.4E-37 211.2 0.9 59 182-240 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 25.5 13 0.00043 34.7 -0.5 37 198-235 100-136 (269)
5 2lau_A THAP domain-containing 19.7 47 0.0016 25.1 1.8 11 183-193 4-14 (81)
6 2d8r_A THAP domain-containing 18.6 47 0.0016 26.4 1.6 13 182-194 8-20 (99)
7 4a6q_A Histone deacetylase com 16.3 24 0.00082 31.2 -0.7 29 202-241 20-48 (143)
8 2dt7_A Splicing factor 3A subu 15.6 25 0.00084 24.6 -0.6 11 195-205 19-29 (38)
9 1gh9_A 8.3 kDa protein (gene M 10.8 65 0.0022 25.1 0.5 28 207-237 6-33 (71)
10 1loi_A Cyclic 3',5'-AMP specif 10.2 51 0.0018 21.4 -0.3 21 224-244 5-25 (26)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.8e-43 Score=292.62 Aligned_cols=87 Identities=59% Similarity=1.041 Sum_probs=80.4
Q ss_pred CCCCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhcc
Q 016364 180 TTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK 259 (390)
Q Consensus 180 ~~~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk 259 (390)
+.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus 5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk 84 (94)
T 1ul4_A 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84 (94)
T ss_dssp ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 016364 260 SQPEAVR 266 (390)
Q Consensus 260 ~q~~~~~ 266 (390)
+++++..
T Consensus 85 ~~~~~~~ 91 (94)
T 1ul4_A 85 SSGESGP 91 (94)
T ss_dssp CCCC---
T ss_pred CCCCcCC
Confidence 9999864
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=4.1e-42 Score=281.59 Aligned_cols=83 Identities=46% Similarity=0.919 Sum_probs=78.6
Q ss_pred CCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhccCC
Q 016364 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQ 261 (390)
Q Consensus 182 ~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk~q 261 (390)
..++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred ccc
Q 016364 262 PEA 264 (390)
Q Consensus 262 ~~~ 264 (390)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=1.6e-32 Score=211.21 Aligned_cols=59 Identities=64% Similarity=1.203 Sum_probs=57.2
Q ss_pred CCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccc
Q 016364 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240 (390)
Q Consensus 182 ~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFD 240 (390)
+.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.47 E-value=13 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.1
Q ss_pred ChhhhcccccchhccCCCeEEECCchhHHHhhhhcccC
Q 016364 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHG 235 (390)
Q Consensus 198 ~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~ 235 (390)
+..++++++-|..+- .+.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 346889999999865 4566678888999999997664
No 5
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=19.70 E-value=47 Score=25.09 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=7.6
Q ss_pred CCCeeeCCCcc
Q 016364 183 AALCQVEGCGL 193 (390)
Q Consensus 183 ~~~CQVeGC~~ 193 (390)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34688888864
No 6
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=18.65 E-value=47 Score=26.37 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=9.1
Q ss_pred CCCCeeeCCCccc
Q 016364 182 QAALCQVEGCGLD 194 (390)
Q Consensus 182 ~~~~CQVeGC~~d 194 (390)
-+..|-|.||...
T Consensus 8 M~~~C~v~gC~n~ 20 (99)
T 2d8r_A 8 MPTNCAAAGCATT 20 (99)
T ss_dssp CCCCCCSSSCCCS
T ss_pred CCCeeEeCCCCCC
Confidence 3446888888754
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=16.26 E-value=24 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=23.1
Q ss_pred hcccccchhccCCCeEEECCchhHHHhhhhcccCCccccc
Q 016364 202 HRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241 (390)
Q Consensus 202 ~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg 241 (390)
--|.++|+++.+ -||.+=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 348999999864 47766678999999974
No 8
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.61 E-value=25 Score=24.56 Aligned_cols=11 Identities=55% Similarity=1.041 Sum_probs=6.9
Q ss_pred cccChhhhccc
Q 016364 195 LSSAKDYHRKH 205 (390)
Q Consensus 195 Ls~~k~Y~rRh 205 (390)
|..+|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 45566677666
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=10.83 E-value=65 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=20.9
Q ss_pred cchhccCCCeEEECCchhHHHhhhhcccCCc
Q 016364 207 VCENHSKSPKVIVGGLERRFCQQCSRFHGLS 237 (390)
Q Consensus 207 VCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~ 237 (390)
.|+ ..+..++-+|....-|+ ||+-|.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 477 55667778899999998 99765543
No 10
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=10.21 E-value=51 Score=21.42 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=15.2
Q ss_pred hHHHhhhhcccCCcccccccc
Q 016364 224 RRFCQQCSRFHGLSEFDEKKR 244 (390)
Q Consensus 224 qRFCQQCsRFH~L~EFDg~kR 244 (390)
--||..|++=-.+.=+|.-||
T Consensus 5 dffcetcskpwlvgwwdqfkr 25 (26)
T 1loi_A 5 DFFCETCSKPWLVGWWDQFKR 25 (26)
T ss_dssp HHHHHTSSCTTGGGGHHHHTC
T ss_pred HHHHHhcCCchhhhhHHHhcc
Confidence 358999998777766665554
Done!