Query 016366
Match_columns 390
No_of_seqs 178 out of 1971
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 8E-44 1.7E-48 327.9 26.6 338 20-390 2-342 (342)
2 PF00891 Methyltransf_2: O-met 100.0 1.4E-38 3.1E-43 291.6 19.0 237 99-367 2-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1.6E-37 3.5E-42 294.4 25.5 290 37-377 3-305 (306)
4 COG2226 UbiE Methylase involve 99.8 3.2E-18 7E-23 153.5 17.8 160 216-381 41-227 (238)
5 PLN02233 ubiquinone biosynthes 99.8 3.5E-17 7.5E-22 151.4 20.2 159 225-388 71-259 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 4.4E-19 9.6E-24 160.6 7.2 167 218-390 39-233 (233)
7 TIGR00740 methyltransferase, p 99.8 2.5E-18 5.4E-23 157.4 11.1 159 226-389 52-238 (239)
8 TIGR02752 MenG_heptapren 2-hep 99.7 8.3E-17 1.8E-21 146.5 17.2 168 216-390 35-231 (231)
9 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.2E-17 2.6E-22 153.5 11.7 153 226-379 55-231 (247)
10 PTZ00098 phosphoethanolamine N 99.7 9.3E-17 2E-21 148.7 17.1 155 216-380 42-204 (263)
11 PRK14103 trans-aconitate 2-met 99.7 1.5E-16 3.1E-21 147.1 17.0 157 216-376 19-182 (255)
12 PLN02244 tocopherol O-methyltr 99.7 4.2E-16 9.1E-21 149.6 17.9 151 226-380 117-280 (340)
13 KOG1540 Ubiquinone biosynthesi 99.7 4.9E-16 1.1E-20 136.9 14.9 168 201-375 74-278 (296)
14 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.9E-15 4E-20 143.3 17.4 140 226-380 112-258 (340)
15 PRK00216 ubiE ubiquinone/menaq 99.7 4.5E-15 9.9E-20 135.5 19.0 169 216-390 41-238 (239)
16 COG2230 Cfa Cyclopropane fatty 99.7 1.3E-15 2.8E-20 139.1 13.7 157 215-380 61-225 (283)
17 PLN02336 phosphoethanolamine N 99.7 2.2E-15 4.7E-20 151.6 16.8 152 216-380 256-416 (475)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.1E-14 2.3E-19 131.6 17.9 168 217-390 30-223 (223)
19 PRK15068 tRNA mo(5)U34 methylt 99.6 6.5E-15 1.4E-19 140.0 15.9 154 217-380 113-276 (322)
20 TIGR00452 methyltransferase, p 99.6 7.4E-15 1.6E-19 138.2 16.0 154 217-380 112-275 (314)
21 PF02353 CMAS: Mycolic acid cy 99.6 3.3E-15 7.2E-20 138.3 13.0 161 215-380 51-219 (273)
22 PF13489 Methyltransf_23: Meth 99.6 4.3E-15 9.2E-20 127.0 12.7 136 225-375 20-160 (161)
23 PLN02396 hexaprenyldihydroxybe 99.6 1.4E-15 3.1E-20 143.7 10.5 146 227-379 131-290 (322)
24 COG4106 Tam Trans-aconitate me 99.6 3.8E-15 8.3E-20 128.2 12.1 180 203-390 8-203 (257)
25 PRK01683 trans-aconitate 2-met 99.6 2.3E-14 5E-19 132.7 17.8 156 215-373 20-182 (258)
26 smart00828 PKS_MT Methyltransf 99.6 5.6E-15 1.2E-19 133.8 13.2 136 229-380 1-146 (224)
27 PRK11873 arsM arsenite S-adeno 99.6 1.6E-14 3.6E-19 134.7 15.8 145 225-378 75-230 (272)
28 PF12847 Methyltransf_18: Meth 99.6 2.9E-15 6.3E-20 120.3 8.5 97 228-324 2-111 (112)
29 PRK08317 hypothetical protein; 99.6 3.2E-14 7E-19 129.7 16.5 157 217-379 10-177 (241)
30 PF13847 Methyltransf_31: Meth 99.6 2.5E-15 5.4E-20 127.7 8.2 139 226-370 2-152 (152)
31 PRK11207 tellurite resistance 99.6 2.2E-14 4.7E-19 127.3 14.5 141 216-377 20-169 (197)
32 PRK11036 putative S-adenosyl-L 99.6 1.8E-14 3.9E-19 133.1 14.3 157 217-380 36-209 (255)
33 PRK06922 hypothetical protein; 99.6 2.9E-14 6.3E-19 143.2 12.7 141 188-329 378-542 (677)
34 PRK05785 hypothetical protein; 99.6 3E-13 6.5E-18 122.4 18.1 156 227-390 51-224 (226)
35 PRK10258 biotin biosynthesis p 99.6 2.1E-13 4.6E-18 125.7 17.3 149 213-373 29-182 (251)
36 TIGR02072 BioC biotin biosynth 99.5 1.5E-13 3.2E-18 125.4 15.2 136 227-377 34-175 (240)
37 PRK06202 hypothetical protein; 99.5 3.5E-13 7.5E-18 122.8 17.0 146 226-379 59-223 (232)
38 PF08241 Methyltransf_11: Meth 99.5 1.8E-14 3.9E-19 111.6 7.2 88 232-322 1-95 (95)
39 TIGR02021 BchM-ChlM magnesium 99.5 2.2E-13 4.8E-18 122.9 14.9 182 191-382 18-210 (219)
40 PF06080 DUF938: Protein of un 99.5 7E-13 1.5E-17 115.5 16.4 158 230-390 28-204 (204)
41 TIGR00477 tehB tellurite resis 99.5 3.2E-13 6.9E-18 119.6 14.2 140 217-377 21-168 (195)
42 PF08242 Methyltransf_12: Meth 99.5 1.8E-14 3.8E-19 113.2 3.0 87 232-320 1-99 (99)
43 PRK08287 cobalt-precorrin-6Y C 99.5 8.1E-13 1.8E-17 116.3 13.9 137 208-379 12-157 (187)
44 COG2227 UbiG 2-polyprenyl-3-me 99.5 6.4E-14 1.4E-18 123.7 6.2 143 227-379 59-216 (243)
45 TIGR03438 probable methyltrans 99.5 3.8E-13 8.3E-18 127.0 11.7 105 216-323 55-176 (301)
46 PLN02336 phosphoethanolamine N 99.5 6E-13 1.3E-17 133.9 13.7 144 215-375 26-179 (475)
47 smart00138 MeTrc Methyltransfe 99.5 5.2E-13 1.1E-17 123.6 12.1 108 216-324 89-242 (264)
48 PRK11705 cyclopropane fatty ac 99.5 9.3E-13 2E-17 128.1 14.3 153 216-380 157-314 (383)
49 PRK04266 fibrillarin; Provisio 99.5 3.9E-12 8.5E-17 114.7 16.8 143 221-389 67-224 (226)
50 TIGR03587 Pse_Me-ase pseudamin 99.4 1.1E-12 2.5E-17 116.6 13.1 103 225-329 41-147 (204)
51 TIGR00537 hemK_rel_arch HemK-r 99.4 2.5E-12 5.4E-17 112.4 14.6 134 226-390 18-177 (179)
52 KOG1270 Methyltransferases [Co 99.4 2.5E-13 5.5E-18 120.7 8.2 141 228-377 90-248 (282)
53 PF13649 Methyltransf_25: Meth 99.4 1.4E-13 3E-18 108.6 5.3 88 231-318 1-101 (101)
54 PRK07580 Mg-protoporphyrin IX 99.4 3.3E-12 7.2E-17 116.0 15.0 146 226-381 62-217 (230)
55 KOG4300 Predicted methyltransf 99.4 1.8E-12 3.9E-17 111.0 12.1 176 201-384 51-238 (252)
56 PRK12335 tellurite resistance 99.4 4.1E-12 8.9E-17 119.4 14.0 139 218-377 112-258 (287)
57 PF08003 Methyltransf_9: Prote 99.4 8.6E-12 1.9E-16 114.2 13.3 155 216-380 105-269 (315)
58 PRK05134 bifunctional 3-demeth 99.4 9E-12 1.9E-16 113.5 13.4 146 226-378 47-205 (233)
59 PLN02585 magnesium protoporphy 99.3 1.8E-11 4E-16 115.5 14.8 142 227-383 144-304 (315)
60 PRK00107 gidB 16S rRNA methylt 99.3 3.7E-11 8.1E-16 105.1 15.8 117 227-379 45-170 (187)
61 PF05401 NodS: Nodulation prot 99.3 1.9E-12 4.1E-17 111.4 6.8 136 221-380 38-181 (201)
62 PRK15001 SAM-dependent 23S rib 99.3 3E-11 6.4E-16 116.5 15.5 108 217-325 219-341 (378)
63 TIGR00138 gidB 16S rRNA methyl 99.3 1.4E-11 2.9E-16 107.6 11.8 90 228-323 43-141 (181)
64 TIGR03840 TMPT_Se_Te thiopurin 99.3 6.3E-11 1.4E-15 106.0 16.1 132 226-378 33-187 (213)
65 PLN03075 nicotianamine synthas 99.3 1.2E-11 2.7E-16 114.4 10.8 98 226-324 122-233 (296)
66 PRK09489 rsmC 16S ribosomal RN 99.3 7.7E-11 1.7E-15 112.8 16.3 108 218-326 188-305 (342)
67 KOG2361 Predicted methyltransf 99.3 1.4E-11 3E-16 108.3 9.5 146 229-377 73-236 (264)
68 TIGR01983 UbiG ubiquinone bios 99.3 2.1E-11 4.4E-16 110.4 10.9 143 227-379 45-204 (224)
69 PF05891 Methyltransf_PK: AdoM 99.3 1.4E-11 3.1E-16 107.9 8.3 139 227-380 55-203 (218)
70 TIGR02081 metW methionine bios 99.2 1.7E-10 3.8E-15 102.0 14.5 142 227-380 13-169 (194)
71 TIGR02469 CbiT precorrin-6Y C5 99.2 7.7E-11 1.7E-15 96.0 10.8 100 218-323 11-121 (124)
72 PF03848 TehB: Tellurite resis 99.2 5E-11 1.1E-15 103.8 9.9 139 217-376 21-167 (192)
73 PF07021 MetW: Methionine bios 99.2 1.5E-10 3.3E-15 99.6 12.6 145 226-382 12-171 (193)
74 TIGR03534 RF_mod_PrmC protein- 99.2 1.5E-10 3.3E-15 106.5 13.7 132 217-380 79-243 (251)
75 PF05175 MTS: Methyltransferas 99.2 5.7E-11 1.2E-15 102.8 9.7 99 227-325 31-141 (170)
76 PLN02232 ubiquinone biosynthes 99.2 7.2E-11 1.6E-15 101.1 10.1 125 255-381 1-150 (160)
77 PRK13255 thiopurine S-methyltr 99.2 4.5E-10 9.7E-15 100.9 15.6 133 226-379 36-191 (218)
78 PRK00121 trmB tRNA (guanine-N( 99.2 3.5E-11 7.6E-16 107.1 8.2 106 218-325 33-157 (202)
79 PTZ00146 fibrillarin; Provisio 99.2 9.4E-10 2E-14 101.6 17.2 132 225-380 130-273 (293)
80 PRK14968 putative methyltransf 99.2 9.4E-10 2E-14 96.5 15.7 134 226-390 22-188 (188)
81 PRK09328 N5-glutamine S-adenos 99.2 9.3E-10 2E-14 102.8 16.0 135 225-389 106-274 (275)
82 PF12147 Methyltransf_20: Puta 99.2 1.7E-09 3.7E-14 98.2 16.5 155 226-390 134-311 (311)
83 TIGR00091 tRNA (guanine-N(7)-) 99.2 9.6E-11 2.1E-15 103.7 8.0 99 227-325 16-133 (194)
84 PRK11188 rrmJ 23S rRNA methylt 99.1 7.5E-10 1.6E-14 99.0 13.4 107 216-326 40-167 (209)
85 COG2242 CobL Precorrin-6B meth 99.1 9.4E-10 2E-14 94.1 13.1 101 219-326 27-137 (187)
86 PRK11088 rrmA 23S rRNA methylt 99.1 2.4E-10 5.1E-15 106.6 10.0 91 227-326 85-183 (272)
87 COG2813 RsmC 16S RNA G1207 met 99.1 2.6E-09 5.6E-14 98.2 16.0 109 216-325 148-267 (300)
88 PRK13944 protein-L-isoaspartat 99.1 6E-10 1.3E-14 99.4 10.8 99 216-323 62-172 (205)
89 TIGR03533 L3_gln_methyl protei 99.1 1.6E-09 3.5E-14 101.4 13.8 96 227-322 121-249 (284)
90 PRK00517 prmA ribosomal protei 99.1 1.4E-09 3.1E-14 100.1 13.1 121 226-386 118-246 (250)
91 PRK14121 tRNA (guanine-N(7)-)- 99.1 9.4E-10 2E-14 105.7 11.0 108 217-326 113-237 (390)
92 PRK14966 unknown domain/N5-glu 99.1 4.5E-09 9.8E-14 101.7 15.5 133 227-389 251-417 (423)
93 PRK13942 protein-L-isoaspartat 99.1 1.4E-09 3.1E-14 97.5 11.4 99 216-323 66-175 (212)
94 PRK00377 cbiT cobalt-precorrin 99.0 2.6E-09 5.6E-14 94.8 12.5 97 220-322 34-143 (198)
95 PHA03411 putative methyltransf 99.0 3E-09 6.6E-14 97.2 12.4 125 227-374 64-210 (279)
96 PF05148 Methyltransf_8: Hypot 99.0 6.8E-09 1.5E-13 90.2 13.8 149 201-390 46-197 (219)
97 TIGR00536 hemK_fam HemK family 99.0 2.8E-09 6E-14 100.0 12.1 94 229-322 116-242 (284)
98 TIGR00080 pimt protein-L-isoas 99.0 2.5E-09 5.4E-14 96.2 11.3 99 216-323 67-176 (215)
99 COG4123 Predicted O-methyltran 99.0 4.6E-09 1E-13 94.6 12.7 131 219-379 36-195 (248)
100 PRK14967 putative methyltransf 99.0 9.1E-09 2E-13 93.1 14.7 102 225-327 34-162 (223)
101 PRK07402 precorrin-6B methylas 99.0 2.8E-09 6.1E-14 94.4 11.0 101 218-325 32-143 (196)
102 PRK11805 N5-glutamine S-adenos 99.0 3.5E-09 7.5E-14 100.2 11.5 94 229-322 135-261 (307)
103 PRK04457 spermidine synthase; 99.0 3.1E-09 6.8E-14 98.3 9.5 97 226-323 65-176 (262)
104 TIGR00406 prmA ribosomal prote 98.9 1E-08 2.3E-13 96.3 13.0 94 227-326 159-261 (288)
105 PRK01544 bifunctional N5-gluta 98.9 1.3E-08 2.8E-13 102.7 14.4 130 228-387 139-303 (506)
106 cd02440 AdoMet_MTases S-adenos 98.9 7.7E-09 1.7E-13 80.3 9.8 92 230-323 1-103 (107)
107 TIGR00438 rrmJ cell division p 98.9 9E-09 1.9E-13 90.6 11.1 103 218-324 23-146 (188)
108 TIGR01177 conserved hypothetic 98.9 2.2E-08 4.7E-13 96.0 14.1 127 217-379 173-316 (329)
109 PF13659 Methyltransf_26: Meth 98.9 1.6E-09 3.4E-14 87.5 5.2 95 229-324 2-115 (117)
110 TIGR03704 PrmC_rel_meth putati 98.9 4.2E-08 9.1E-13 90.2 14.7 97 227-323 86-215 (251)
111 KOG3045 Predicted RNA methylas 98.9 5E-08 1.1E-12 86.7 13.9 156 192-390 141-303 (325)
112 COG4976 Predicted methyltransf 98.9 4E-09 8.6E-14 92.1 6.6 162 200-380 95-267 (287)
113 PRK13256 thiopurine S-methyltr 98.9 4E-08 8.7E-13 88.1 12.8 100 226-327 42-166 (226)
114 PF05724 TPMT: Thiopurine S-me 98.8 2.1E-08 4.5E-13 90.0 10.2 131 225-378 35-190 (218)
115 PF01739 CheR: CheR methyltran 98.8 1.3E-08 2.9E-13 89.5 8.6 98 227-324 31-175 (196)
116 PRK00811 spermidine synthase; 98.8 1.3E-08 2.8E-13 95.3 9.0 98 226-323 75-190 (283)
117 PF05219 DREV: DREV methyltran 98.8 4.8E-08 1E-12 87.8 12.2 144 227-380 94-242 (265)
118 PRK00312 pcm protein-L-isoaspa 98.8 3.2E-08 6.9E-13 88.8 11.1 98 217-325 69-176 (212)
119 KOG1271 Methyltransferases [Ge 98.8 1.7E-08 3.6E-13 85.2 8.4 124 227-380 67-207 (227)
120 PF04672 Methyltransf_19: S-ad 98.8 4E-08 8.7E-13 89.3 11.4 151 217-375 58-233 (267)
121 COG2890 HemK Methylase of poly 98.8 2.2E-07 4.8E-12 86.6 14.7 127 230-386 113-272 (280)
122 COG2519 GCD14 tRNA(1-methylade 98.7 1E-07 2.3E-12 85.3 11.4 106 215-328 83-199 (256)
123 PRK01581 speE spermidine synth 98.7 3.9E-08 8.4E-13 93.4 9.1 98 226-323 149-267 (374)
124 PLN02366 spermidine synthase 98.7 6.8E-08 1.5E-12 91.0 10.5 98 226-323 90-205 (308)
125 KOG2899 Predicted methyltransf 98.7 5.4E-08 1.2E-12 85.8 8.7 142 225-374 56-253 (288)
126 PRK03612 spermidine synthase; 98.7 1.1E-07 2.4E-12 96.5 12.1 98 226-324 296-415 (521)
127 COG2264 PrmA Ribosomal protein 98.7 2.5E-07 5.5E-12 85.7 13.0 127 218-381 155-291 (300)
128 KOG3010 Methyltransferase [Gen 98.7 7E-08 1.5E-12 85.3 8.4 90 229-323 35-135 (261)
129 PRK13943 protein-L-isoaspartat 98.7 1E-07 2.3E-12 90.3 9.9 99 217-324 71-180 (322)
130 PRK10611 chemotaxis methyltran 98.7 9.1E-08 2E-12 89.0 9.1 98 227-324 115-262 (287)
131 COG1352 CheR Methylase of chem 98.7 3.3E-07 7.1E-12 84.2 12.3 98 227-324 96-241 (268)
132 PF06325 PrmA: Ribosomal prote 98.6 2.3E-07 4.9E-12 86.7 11.0 121 226-385 160-290 (295)
133 TIGR00417 speE spermidine synt 98.6 1.1E-07 2.5E-12 88.4 8.8 98 226-323 71-185 (270)
134 PLN02781 Probable caffeoyl-CoA 98.6 2.9E-07 6.3E-12 83.8 11.1 97 225-326 66-180 (234)
135 PF08100 Dimerisation: Dimeris 98.6 2.6E-08 5.6E-13 67.0 3.0 49 39-87 1-51 (51)
136 PF02390 Methyltransf_4: Putat 98.6 8.1E-08 1.7E-12 84.8 6.4 93 229-326 19-135 (195)
137 smart00650 rADc Ribosomal RNA 98.6 1.8E-07 3.8E-12 80.9 8.4 102 216-325 3-114 (169)
138 TIGR00563 rsmB ribosomal RNA s 98.6 2.6E-07 5.6E-12 91.7 10.1 112 217-329 229-373 (426)
139 PRK10901 16S rRNA methyltransf 98.6 3.8E-07 8.3E-12 90.5 11.3 110 217-327 235-375 (427)
140 COG2518 Pcm Protein-L-isoaspar 98.6 5.3E-07 1.2E-11 79.0 10.5 100 215-325 61-170 (209)
141 PRK14901 16S rRNA methyltransf 98.6 3.5E-07 7.5E-12 91.0 10.3 108 219-327 245-387 (434)
142 PF01135 PCMT: Protein-L-isoas 98.5 1.3E-07 2.7E-12 84.2 6.2 102 215-325 61-173 (209)
143 KOG1541 Predicted protein carb 98.5 2.5E-07 5.5E-12 80.5 7.7 93 227-322 50-158 (270)
144 PRK14902 16S rRNA methyltransf 98.5 5E-07 1.1E-11 90.2 10.5 108 219-327 243-382 (444)
145 PHA03412 putative methyltransf 98.5 5.7E-07 1.2E-11 80.6 9.5 92 228-319 50-158 (241)
146 PLN02672 methionine S-methyltr 98.5 1.1E-06 2.3E-11 94.7 13.2 122 228-379 119-304 (1082)
147 PRK14904 16S rRNA methyltransf 98.5 8.5E-07 1.8E-11 88.5 10.9 104 225-328 248-381 (445)
148 PF03291 Pox_MCEL: mRNA cappin 98.5 3.6E-07 7.8E-12 87.0 7.8 98 227-325 62-187 (331)
149 PF08704 GCD14: tRNA methyltra 98.5 6.3E-07 1.4E-11 81.5 8.6 104 216-327 30-149 (247)
150 COG0220 Predicted S-adenosylme 98.4 3.3E-07 7.1E-12 82.4 5.4 92 229-325 50-165 (227)
151 PRK14903 16S rRNA methyltransf 98.4 2E-06 4.4E-11 85.2 10.8 104 225-328 235-370 (431)
152 PF08123 DOT1: Histone methyla 98.4 1.3E-06 2.8E-11 77.5 7.8 110 216-329 32-163 (205)
153 COG3963 Phospholipid N-methylt 98.3 4.8E-06 1E-10 69.6 10.3 115 211-326 33-158 (194)
154 TIGR00446 nop2p NOL1/NOP2/sun 98.3 2.6E-06 5.6E-11 79.0 9.9 104 225-328 69-203 (264)
155 TIGR00755 ksgA dimethyladenosi 98.3 3.3E-06 7E-11 77.9 9.6 91 214-312 17-116 (253)
156 PRK13168 rumA 23S rRNA m(5)U19 98.3 4.7E-06 1E-10 83.2 11.0 100 216-324 287-400 (443)
157 PRK11727 23S rRNA mA1618 methy 98.3 6.1E-06 1.3E-10 78.0 10.5 145 227-380 114-294 (321)
158 PF11968 DUF3321: Putative met 98.3 2.3E-05 5E-10 68.9 13.0 120 228-380 52-183 (219)
159 TIGR03439 methyl_EasF probable 98.2 4.8E-06 1E-10 78.7 9.0 104 216-322 68-195 (319)
160 COG0421 SpeE Spermidine syntha 98.2 4.9E-06 1.1E-10 77.3 8.7 98 226-323 75-189 (282)
161 KOG1975 mRNA cap methyltransfe 98.2 4.9E-06 1.1E-10 76.6 8.4 103 217-322 109-235 (389)
162 PRK14896 ksgA 16S ribosomal RN 98.2 5.7E-06 1.2E-10 76.5 9.0 80 214-296 17-102 (258)
163 PF01596 Methyltransf_3: O-met 98.2 2.4E-06 5.2E-11 75.8 6.0 98 225-327 43-158 (205)
164 PRK00274 ksgA 16S ribosomal RN 98.2 5.2E-06 1.1E-10 77.4 8.4 75 216-293 32-113 (272)
165 PF10294 Methyltransf_16: Puta 98.2 3.8E-06 8.2E-11 72.8 6.8 101 225-327 43-159 (173)
166 PLN02476 O-methyltransferase 98.2 8.7E-06 1.9E-10 75.3 9.5 97 225-327 116-230 (278)
167 TIGR00478 tly hemolysin TlyA f 98.2 2.8E-05 6.1E-10 70.1 12.3 145 215-380 63-219 (228)
168 COG4122 Predicted O-methyltran 98.2 6.9E-06 1.5E-10 73.1 8.2 106 218-328 50-170 (219)
169 PLN02823 spermine synthase 98.2 6.3E-06 1.4E-10 78.6 8.4 97 226-323 102-219 (336)
170 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.1E-05 2.4E-10 71.3 8.9 95 227-325 53-160 (199)
171 PTZ00338 dimethyladenosine tra 98.1 9.5E-06 2.1E-10 76.2 8.9 90 214-307 24-122 (294)
172 KOG1331 Predicted methyltransf 98.1 6E-06 1.3E-10 75.1 6.5 94 226-323 44-142 (293)
173 PF05185 PRMT5: PRMT5 arginine 98.1 8E-06 1.7E-10 81.0 7.9 125 189-321 152-294 (448)
174 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1E-05 2.2E-10 85.2 7.6 96 227-323 538-655 (702)
175 KOG2904 Predicted methyltransf 98.0 4.8E-05 1E-09 68.7 10.6 99 226-324 147-285 (328)
176 PRK00536 speE spermidine synth 98.0 1.9E-05 4.2E-10 72.5 8.3 88 226-323 71-170 (262)
177 KOG3191 Predicted N6-DNA-methy 98.0 0.00015 3.3E-09 61.6 12.6 133 228-389 44-207 (209)
178 KOG1500 Protein arginine N-met 98.0 1.6E-05 3.6E-10 73.4 7.3 93 228-321 178-279 (517)
179 PRK01544 bifunctional N5-gluta 98.0 1.2E-05 2.5E-10 81.5 7.0 98 227-325 347-463 (506)
180 PF09243 Rsm22: Mitochondrial 98.0 2.9E-05 6.2E-10 72.4 9.1 112 215-329 22-144 (274)
181 KOG2940 Predicted methyltransf 98.0 7.4E-05 1.6E-09 65.7 10.3 142 226-377 71-226 (325)
182 PRK04148 hypothetical protein; 98.0 6.4E-05 1.4E-09 61.5 9.4 99 216-325 6-110 (134)
183 PF03141 Methyltransf_29: Puta 98.0 1.3E-05 2.8E-10 78.5 6.1 98 227-328 117-223 (506)
184 PLN02589 caffeoyl-CoA O-methyl 97.9 2.9E-05 6.3E-10 70.9 7.8 97 225-327 77-192 (247)
185 PRK15128 23S rRNA m(5)C1962 me 97.9 3.1E-05 6.7E-10 75.8 8.5 97 227-324 220-339 (396)
186 PF01564 Spermine_synth: Sperm 97.9 1.1E-05 2.4E-10 73.9 4.8 99 226-324 75-191 (246)
187 KOG1499 Protein arginine N-met 97.9 1.9E-05 4.2E-10 74.0 5.8 94 227-321 60-164 (346)
188 TIGR00479 rumA 23S rRNA (uraci 97.9 6.2E-05 1.3E-09 75.0 9.4 97 218-322 284-394 (431)
189 PF04816 DUF633: Family of unk 97.9 6.8E-05 1.5E-09 66.6 8.4 123 231-388 1-137 (205)
190 PRK03522 rumB 23S rRNA methylu 97.8 5.4E-05 1.2E-09 72.1 8.2 64 227-292 173-247 (315)
191 COG0030 KsgA Dimethyladenosine 97.8 0.00011 2.3E-09 67.1 8.9 93 214-309 18-118 (259)
192 COG4798 Predicted methyltransf 97.8 0.00027 5.9E-09 60.7 10.6 146 217-379 39-206 (238)
193 KOG1661 Protein-L-isoaspartate 97.8 5E-05 1.1E-09 66.0 5.9 91 225-323 80-192 (237)
194 COG2263 Predicted RNA methylas 97.7 0.0001 2.2E-09 63.3 7.1 118 226-377 44-167 (198)
195 KOG3987 Uncharacterized conser 97.7 1.7E-05 3.8E-10 68.5 1.9 140 226-380 111-262 (288)
196 COG0293 FtsJ 23S rRNA methylas 97.7 0.00049 1.1E-08 60.4 10.4 112 211-326 29-161 (205)
197 KOG0820 Ribosomal RNA adenine 97.6 0.00012 2.5E-09 66.2 6.5 78 214-293 46-131 (315)
198 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 7.5E-05 1.6E-09 68.3 5.2 91 274-378 138-239 (256)
199 TIGR00095 RNA methyltransferas 97.6 0.00016 3.5E-09 63.5 7.1 92 227-322 49-157 (189)
200 TIGR02085 meth_trns_rumB 23S r 97.6 0.00017 3.6E-09 70.4 7.4 90 227-323 233-333 (374)
201 COG4301 Uncharacterized conser 97.6 0.00089 1.9E-08 59.7 11.0 97 226-322 77-191 (321)
202 PF01728 FtsJ: FtsJ-like methy 97.6 0.00011 2.4E-09 64.1 5.4 109 214-326 8-141 (181)
203 KOG3115 Methyltransferase-like 97.6 0.0001 2.2E-09 63.6 5.0 99 229-327 62-186 (249)
204 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00016 3.5E-09 67.6 6.4 77 215-292 8-97 (296)
205 COG2521 Predicted archaeal met 97.5 0.00071 1.5E-08 59.9 9.9 127 225-379 132-278 (287)
206 PF07942 N2227: N2227-like pro 97.5 0.0028 6.1E-08 58.4 14.2 137 226-378 55-242 (270)
207 PF02527 GidB: rRNA small subu 97.5 0.00027 5.8E-09 61.7 7.1 89 230-324 51-148 (184)
208 TIGR00027 mthyl_TIGR00027 meth 97.5 0.0026 5.6E-08 58.8 13.2 148 226-376 80-248 (260)
209 PLN02668 indole-3-acetate carb 97.4 0.0091 2E-07 57.9 15.9 152 227-378 63-309 (386)
210 PRK11760 putative 23S rRNA C24 97.3 0.012 2.6E-07 55.7 16.1 96 226-329 210-309 (357)
211 PF13679 Methyltransf_32: Meth 97.3 0.0011 2.3E-08 55.4 8.1 95 225-326 23-133 (141)
212 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00054 1.2E-08 66.8 6.2 90 228-323 58-157 (382)
213 COG4076 Predicted RNA methylas 97.2 0.00042 9.2E-09 59.2 4.6 92 229-322 34-133 (252)
214 COG0357 GidB Predicted S-adeno 97.2 0.0012 2.6E-08 58.7 7.6 120 228-380 68-197 (215)
215 PF00398 RrnaAD: Ribosomal RNA 97.2 0.00076 1.6E-08 62.5 6.7 98 213-316 17-123 (262)
216 COG1889 NOP1 Fibrillarin-like 97.2 0.023 5.1E-07 49.4 14.9 140 225-388 74-227 (231)
217 PF01269 Fibrillarin: Fibrilla 97.2 0.0063 1.4E-07 54.0 11.6 130 225-380 71-214 (229)
218 COG5459 Predicted rRNA methyla 97.2 0.00075 1.6E-08 63.1 5.9 102 228-329 114-230 (484)
219 PF01170 UPF0020: Putative RNA 97.2 0.0014 2.9E-08 57.1 7.3 97 225-321 26-148 (179)
220 KOG1709 Guanidinoacetate methy 97.2 0.0034 7.5E-08 54.9 9.4 116 210-329 86-211 (271)
221 COG2384 Predicted SAM-dependen 97.1 0.014 3E-07 51.6 13.1 120 227-381 16-146 (226)
222 COG0500 SmtA SAM-dependent met 97.1 0.004 8.8E-08 51.4 9.8 95 231-329 52-160 (257)
223 COG4262 Predicted spermidine s 97.1 0.0012 2.6E-08 62.1 6.5 94 226-325 288-408 (508)
224 COG3315 O-Methyltransferase in 97.1 0.0027 5.8E-08 59.7 8.7 163 208-376 75-262 (297)
225 PRK11933 yebU rRNA (cytosine-C 96.9 0.0056 1.2E-07 61.2 10.0 101 225-325 111-243 (470)
226 KOG2798 Putative trehalase [Ca 96.9 0.013 2.9E-07 54.2 11.5 152 214-380 134-339 (369)
227 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0017 3.7E-08 63.1 6.1 51 229-281 208-265 (362)
228 smart00346 HTH_ICLR helix_turn 96.9 0.0014 2.9E-08 50.1 4.3 57 46-108 7-64 (91)
229 COG1041 Predicted DNA modifica 96.9 0.021 4.5E-07 54.2 12.9 101 223-325 193-311 (347)
230 smart00550 Zalpha Z-DNA-bindin 96.9 0.0022 4.8E-08 46.2 5.0 60 43-107 5-66 (68)
231 KOG3420 Predicted RNA methylas 96.8 0.0013 2.7E-08 54.0 3.7 69 227-296 48-125 (185)
232 KOG1269 SAM-dependent methyltr 96.8 0.0017 3.8E-08 62.5 4.9 101 226-329 109-220 (364)
233 PF09339 HTH_IclR: IclR helix- 96.7 0.00083 1.8E-08 45.6 1.4 44 47-94 6-50 (52)
234 PRK10141 DNA-binding transcrip 96.7 0.0024 5.3E-08 51.2 4.3 68 37-108 9-76 (117)
235 PF02475 Met_10: Met-10+ like- 96.6 0.0021 4.6E-08 56.7 4.2 90 226-321 100-199 (200)
236 KOG2915 tRNA(1-methyladenosine 96.6 0.029 6.3E-07 51.1 11.3 105 215-327 94-213 (314)
237 KOG3201 Uncharacterized conser 96.6 0.00087 1.9E-08 55.9 1.4 98 227-326 29-142 (201)
238 PF12840 HTH_20: Helix-turn-he 96.6 0.0015 3.3E-08 46.0 2.5 53 38-94 4-56 (61)
239 KOG4589 Cell division protein 96.6 0.012 2.7E-07 50.4 8.3 102 217-323 59-183 (232)
240 COG4627 Uncharacterized protei 96.6 0.00079 1.7E-08 55.7 0.8 54 272-325 31-87 (185)
241 PF03492 Methyltransf_7: SAM d 96.6 0.03 6.5E-07 53.7 11.8 152 225-376 14-251 (334)
242 PF13578 Methyltransf_24: Meth 96.5 0.001 2.2E-08 52.5 1.2 90 232-324 1-105 (106)
243 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.018 3.9E-07 60.9 10.8 112 213-325 176-348 (702)
244 COG3897 Predicted methyltransf 96.5 0.012 2.7E-07 50.9 7.7 104 223-329 75-184 (218)
245 PF13412 HTH_24: Winged helix- 96.5 0.0031 6.7E-08 42.0 3.3 45 45-93 4-48 (48)
246 COG1189 Predicted rRNA methyla 96.5 0.044 9.6E-07 49.1 11.3 150 216-380 68-226 (245)
247 PF09445 Methyltransf_15: RNA 96.5 0.00093 2E-08 56.8 0.7 63 230-293 2-77 (163)
248 TIGR02143 trmA_only tRNA (urac 96.5 0.0026 5.6E-08 61.6 3.8 51 229-281 199-256 (353)
249 PF01978 TrmB: Sugar-specific 96.4 0.0016 3.4E-08 47.0 1.6 47 45-95 9-55 (68)
250 PHA00738 putative HTH transcri 96.4 0.0047 1E-07 48.0 4.2 63 44-110 12-74 (108)
251 PF02384 N6_Mtase: N-6 DNA Met 96.2 0.012 2.5E-07 56.0 6.8 100 225-325 44-184 (311)
252 PF13463 HTH_27: Winged helix 96.2 0.0047 1E-07 44.2 3.0 58 47-108 6-67 (68)
253 TIGR01444 fkbM_fam methyltrans 96.2 0.0061 1.3E-07 50.6 4.1 51 230-280 1-58 (143)
254 PF03059 NAS: Nicotianamine sy 96.1 0.016 3.4E-07 53.7 6.9 96 227-323 120-229 (276)
255 PF01022 HTH_5: Bacterial regu 96.1 0.0036 7.9E-08 41.5 2.0 43 46-93 4-46 (47)
256 PRK15090 DNA-binding transcrip 96.1 0.0068 1.5E-07 56.0 4.3 58 47-110 17-74 (257)
257 TIGR02987 met_A_Alw26 type II 96.0 0.022 4.8E-07 58.3 8.2 66 227-292 31-119 (524)
258 TIGR02337 HpaR homoprotocatech 96.0 0.0098 2.1E-07 47.9 4.4 69 43-115 27-98 (118)
259 PF01047 MarR: MarR family; I 96.0 0.0046 9.9E-08 43.0 2.2 48 46-97 5-52 (59)
260 PF12802 MarR_2: MarR family; 96.0 0.0068 1.5E-07 42.5 3.0 48 45-96 6-55 (62)
261 COG1414 IclR Transcriptional r 95.9 0.0083 1.8E-07 55.0 4.2 58 47-110 7-65 (246)
262 PRK11512 DNA-binding transcrip 95.9 0.039 8.4E-07 46.1 7.7 64 46-113 42-108 (144)
263 KOG1663 O-methyltransferase [S 95.8 0.063 1.4E-06 47.8 8.6 99 225-328 71-187 (237)
264 PF04989 CmcI: Cephalosporin h 95.8 0.043 9.3E-07 48.4 7.6 100 227-328 32-151 (206)
265 KOG2918 Carboxymethyl transfer 95.7 0.1 2.2E-06 48.6 10.1 143 225-379 85-278 (335)
266 PF13601 HTH_34: Winged helix 95.7 0.0058 1.3E-07 45.6 1.8 62 45-110 1-66 (80)
267 PF04072 LCM: Leucine carboxyl 95.7 0.057 1.2E-06 47.1 8.2 85 226-310 77-182 (183)
268 PRK11569 transcriptional repre 95.6 0.014 3E-07 54.5 4.4 58 47-110 31-89 (274)
269 PRK10163 DNA-binding transcrip 95.6 0.014 3E-07 54.3 4.4 57 47-109 28-85 (271)
270 PF07091 FmrO: Ribosomal RNA m 95.6 0.016 3.4E-07 52.5 4.5 100 226-327 104-211 (251)
271 PF07757 AdoMet_MTase: Predict 95.6 0.014 3E-07 45.5 3.3 44 213-259 45-88 (112)
272 TIGR02431 pcaR_pcaU beta-ketoa 95.5 0.014 3.1E-07 53.5 3.9 56 47-110 12-68 (248)
273 PF02082 Rrf2: Transcriptional 95.5 0.023 5E-07 42.6 4.3 48 58-110 25-72 (83)
274 PF14947 HTH_45: Winged helix- 95.5 0.0071 1.5E-07 44.8 1.5 57 49-114 11-67 (77)
275 PRK09834 DNA-binding transcrip 95.4 0.016 3.4E-07 53.7 4.0 61 47-113 14-75 (263)
276 PF11312 DUF3115: Protein of u 95.4 0.023 5E-07 53.0 4.9 99 228-326 87-244 (315)
277 cd00092 HTH_CRP helix_turn_hel 95.3 0.041 8.9E-07 39.1 5.1 44 57-107 24-67 (67)
278 PRK10857 DNA-binding transcrip 95.3 0.028 6E-07 48.1 4.8 48 57-109 24-71 (164)
279 smart00347 HTH_MARR helix_turn 95.3 0.029 6.2E-07 43.2 4.5 65 45-113 11-78 (101)
280 COG3355 Predicted transcriptio 95.3 0.026 5.7E-07 45.5 4.2 46 46-95 29-75 (126)
281 TIGR00308 TRM1 tRNA(guanine-26 95.3 0.072 1.6E-06 51.8 8.1 90 229-324 46-147 (374)
282 PF09012 FeoC: FeoC like trans 95.2 0.016 3.4E-07 41.9 2.6 42 49-94 5-46 (69)
283 smart00419 HTH_CRP helix_turn_ 95.2 0.022 4.9E-07 37.4 3.2 40 58-105 8-47 (48)
284 COG2520 Predicted methyltransf 95.2 0.13 2.8E-06 49.2 9.2 97 226-329 187-294 (341)
285 PF08220 HTH_DeoR: DeoR-like h 95.1 0.033 7.1E-07 38.5 3.8 43 48-94 4-46 (57)
286 COG2345 Predicted transcriptio 95.1 0.031 6.7E-07 49.7 4.4 61 47-111 14-79 (218)
287 PF03602 Cons_hypoth95: Conser 95.0 0.02 4.4E-07 49.9 3.2 96 227-326 42-154 (183)
288 TIGR02010 IscR iron-sulfur clu 95.0 0.04 8.6E-07 45.5 4.7 49 57-110 24-72 (135)
289 TIGR00006 S-adenosyl-methyltra 95.0 0.061 1.3E-06 50.6 6.5 66 215-281 9-80 (305)
290 KOG2730 Methylase [General fun 94.9 0.03 6.6E-07 49.4 4.0 54 227-281 94-154 (263)
291 PRK11050 manganese transport r 94.9 0.12 2.6E-06 43.6 7.6 81 21-113 19-99 (152)
292 PF04703 FaeA: FaeA-like prote 94.9 0.024 5.3E-07 39.8 2.7 43 48-94 4-47 (62)
293 TIGR01889 Staph_reg_Sar staphy 94.9 0.033 7.2E-07 44.1 3.8 67 43-113 24-97 (109)
294 COG1092 Predicted SAM-dependen 94.9 0.073 1.6E-06 51.9 6.8 99 227-326 217-338 (393)
295 PRK03902 manganese transport t 94.9 0.036 7.9E-07 46.2 4.2 55 52-113 16-70 (142)
296 smart00418 HTH_ARSR helix_turn 94.6 0.064 1.4E-06 37.3 4.3 42 49-95 2-43 (66)
297 PF01795 Methyltransf_5: MraW 94.6 0.068 1.5E-06 50.3 5.6 65 215-280 9-79 (310)
298 TIGR02702 SufR_cyano iron-sulf 94.5 0.051 1.1E-06 48.3 4.4 63 47-113 4-71 (203)
299 smart00420 HTH_DEOR helix_turn 94.3 0.065 1.4E-06 35.8 3.7 42 49-94 5-46 (53)
300 TIGR00738 rrf2_super rrf2 fami 94.3 0.075 1.6E-06 43.5 4.8 49 57-110 24-72 (132)
301 TIGR01884 cas_HTH CRISPR locus 94.2 0.071 1.5E-06 47.3 4.7 59 45-108 144-202 (203)
302 COG0116 Predicted N6-adenine-s 94.2 0.4 8.7E-06 46.3 10.0 109 215-324 180-344 (381)
303 COG2265 TrmA SAM-dependent met 94.1 0.051 1.1E-06 53.9 3.9 99 216-323 283-395 (432)
304 KOG1099 SAM-dependent methyltr 94.0 0.11 2.5E-06 46.1 5.5 98 220-321 34-160 (294)
305 COG1959 Predicted transcriptio 94.0 0.058 1.3E-06 45.4 3.5 48 58-110 25-72 (150)
306 cd00090 HTH_ARSR Arsenical Res 93.9 0.092 2E-06 37.7 4.1 56 47-107 10-65 (78)
307 PF04967 HTH_10: HTH DNA bindi 93.7 0.076 1.6E-06 36.0 2.9 41 38-85 6-46 (53)
308 PRK06266 transcription initiat 93.6 0.13 2.9E-06 44.5 5.2 44 47-94 25-68 (178)
309 PRK11920 rirA iron-responsive 93.6 0.1 2.2E-06 44.1 4.4 48 58-110 24-71 (153)
310 COG4190 Predicted transcriptio 93.6 0.11 2.3E-06 41.9 4.0 59 23-95 53-111 (144)
311 PF01726 LexA_DNA_bind: LexA D 93.5 0.084 1.8E-06 37.6 3.1 38 54-94 20-58 (65)
312 KOG4058 Uncharacterized conser 93.5 0.35 7.7E-06 40.0 7.0 106 216-329 62-177 (199)
313 COG4742 Predicted transcriptio 93.4 0.11 2.3E-06 47.5 4.4 68 39-115 8-75 (260)
314 PRK03573 transcriptional regul 93.4 0.47 1E-05 39.4 8.1 62 49-114 36-101 (144)
315 PF01861 DUF43: Protein of unk 93.4 2.1 4.5E-05 38.8 12.4 93 227-323 44-147 (243)
316 COG1321 TroR Mn-dependent tran 93.3 0.12 2.5E-06 43.7 4.2 57 51-114 17-73 (154)
317 TIGR02944 suf_reg_Xantho FeS a 93.3 0.1 2.2E-06 42.7 3.8 46 57-107 24-69 (130)
318 KOG2187 tRNA uracil-5-methyltr 93.2 0.096 2.1E-06 52.0 4.1 56 225-282 381-443 (534)
319 KOG2793 Putative N2,N2-dimethy 93.2 0.53 1.1E-05 42.9 8.5 99 227-328 86-203 (248)
320 PF05958 tRNA_U5-meth_tr: tRNA 93.2 0.055 1.2E-06 52.4 2.3 63 214-280 185-254 (352)
321 PRK11014 transcriptional repre 93.2 0.13 2.7E-06 42.9 4.2 61 39-107 9-69 (141)
322 TIGR00122 birA_repr_reg BirA b 93.1 0.15 3.2E-06 36.6 4.0 56 46-109 2-57 (69)
323 KOG3924 Putative protein methy 93.1 0.24 5.1E-06 47.7 6.3 108 217-328 183-312 (419)
324 COG0742 N6-adenine-specific me 93.1 0.37 8E-06 41.9 7.0 97 227-324 43-154 (187)
325 KOG2352 Predicted spermine/spe 93.0 0.63 1.4E-05 46.1 9.3 101 229-330 50-169 (482)
326 smart00344 HTH_ASNC helix_turn 92.8 0.13 2.8E-06 40.4 3.7 45 45-93 4-48 (108)
327 PRK13777 transcriptional regul 92.7 0.17 3.7E-06 44.1 4.4 63 47-113 48-113 (185)
328 PF03141 Methyltransf_29: Puta 92.6 0.4 8.6E-06 47.7 7.2 133 225-390 363-506 (506)
329 PRK14165 winged helix-turn-hel 92.5 0.15 3.1E-06 45.7 3.8 59 51-113 14-72 (217)
330 KOG1562 Spermidine synthase [A 92.5 0.28 6E-06 45.4 5.6 101 225-326 119-238 (337)
331 PF01325 Fe_dep_repress: Iron 92.4 0.17 3.7E-06 35.3 3.4 37 55-95 19-55 (60)
332 PF10672 Methyltrans_SAM: S-ad 92.4 0.18 4E-06 47.1 4.5 98 227-325 123-239 (286)
333 COG4189 Predicted transcriptio 92.3 0.22 4.9E-06 44.1 4.6 55 36-94 15-69 (308)
334 PF06859 Bin3: Bicoid-interact 92.3 0.059 1.3E-06 42.3 1.0 85 287-380 3-94 (110)
335 PF01638 HxlR: HxlR-like helix 92.3 0.11 2.5E-06 39.5 2.5 60 49-113 10-73 (90)
336 PF10354 DUF2431: Domain of un 92.2 2.7 5.9E-05 35.9 11.2 121 233-380 2-154 (166)
337 COG1846 MarR Transcriptional r 92.2 0.19 4.1E-06 40.0 3.9 70 42-115 20-92 (126)
338 PF08279 HTH_11: HTH domain; 91.9 0.19 4.1E-06 34.2 3.1 41 48-92 4-45 (55)
339 PRK15431 ferrous iron transpor 91.8 0.26 5.7E-06 36.1 3.8 42 49-94 7-48 (78)
340 PF08461 HTH_12: Ribonuclease 91.5 0.28 6E-06 35.0 3.7 58 49-110 3-63 (66)
341 PF03514 GRAS: GRAS domain fam 91.2 0.96 2.1E-05 44.2 8.3 109 216-327 100-246 (374)
342 PF07381 DUF1495: Winged helix 91.2 0.44 9.5E-06 36.2 4.6 68 42-113 7-87 (90)
343 COG0144 Sun tRNA and rRNA cyto 91.1 1.6 3.4E-05 42.4 9.6 102 225-326 154-290 (355)
344 PF11899 DUF3419: Protein of u 91.0 0.31 6.6E-06 47.6 4.6 60 270-329 275-339 (380)
345 PRK06474 hypothetical protein; 90.8 0.37 8.1E-06 41.8 4.5 71 38-112 5-82 (178)
346 COG0275 Predicted S-adenosylme 90.7 0.62 1.3E-05 43.4 6.0 67 214-281 11-84 (314)
347 PRK10870 transcriptional repre 90.5 0.35 7.5E-06 41.9 4.1 65 46-114 57-126 (176)
348 COG1064 AdhP Zn-dependent alco 90.4 1.9 4E-05 41.3 9.2 92 225-326 164-261 (339)
349 KOG0822 Protein kinase inhibit 90.4 1.6 3.5E-05 43.7 8.9 125 189-321 334-475 (649)
350 smart00345 HTH_GNTR helix_turn 90.4 0.34 7.3E-06 33.2 3.2 33 58-94 19-52 (60)
351 PF06163 DUF977: Bacterial pro 90.3 0.54 1.2E-05 37.7 4.6 49 42-94 10-58 (127)
352 PF00325 Crp: Bacterial regula 90.2 0.24 5.1E-06 29.8 1.9 31 58-92 2-32 (32)
353 cd07377 WHTH_GntR Winged helix 90.1 0.67 1.5E-05 32.3 4.6 32 59-94 26-57 (66)
354 COG3432 Predicted transcriptio 90.1 0.14 3E-06 39.1 1.0 59 49-114 20-83 (95)
355 cd08283 FDH_like_1 Glutathione 89.9 2.2 4.7E-05 41.7 9.7 99 225-325 182-307 (386)
356 TIGR00373 conserved hypothetic 89.8 0.36 7.9E-06 41.0 3.5 44 47-94 17-60 (158)
357 smart00529 HTH_DTXR Helix-turn 89.7 0.4 8.6E-06 36.7 3.4 46 61-113 2-47 (96)
358 PF07789 DUF1627: Protein of u 89.7 0.45 9.7E-06 39.2 3.7 48 55-106 3-50 (155)
359 KOG1596 Fibrillarin and relate 89.7 1.5 3.3E-05 39.5 7.3 96 225-324 154-261 (317)
360 PHA02943 hypothetical protein; 89.6 0.52 1.1E-05 39.0 4.1 43 48-95 15-57 (165)
361 PRK01747 mnmC bifunctional tRN 89.5 0.93 2E-05 47.9 7.1 96 227-322 57-204 (662)
362 TIGR01610 phage_O_Nterm phage 88.9 0.88 1.9E-05 35.0 4.8 44 57-106 46-89 (95)
363 PRK04172 pheS phenylalanyl-tRN 88.5 0.36 7.8E-06 48.9 3.1 68 45-117 7-74 (489)
364 cd07153 Fur_like Ferric uptake 88.3 0.9 1.9E-05 36.1 4.7 50 46-95 3-54 (116)
365 PRK11169 leucine-responsive tr 87.9 0.59 1.3E-05 39.9 3.6 47 43-93 13-59 (164)
366 PRK11179 DNA-binding transcrip 87.6 0.69 1.5E-05 39.0 3.8 46 44-93 9-54 (153)
367 COG1522 Lrp Transcriptional re 87.1 0.77 1.7E-05 38.5 3.8 47 44-94 8-54 (154)
368 COG1378 Predicted transcriptio 86.8 1.1 2.4E-05 41.0 4.9 62 44-110 16-77 (247)
369 PLN02853 Probable phenylalanyl 86.7 0.56 1.2E-05 46.9 3.1 71 43-118 2-73 (492)
370 PRK13509 transcriptional repre 86.4 0.94 2E-05 41.6 4.3 44 47-94 8-51 (251)
371 PF02002 TFIIE_alpha: TFIIE al 86.0 0.45 9.8E-06 37.3 1.7 43 48-94 17-59 (105)
372 COG2512 Predicted membrane-ass 85.9 0.88 1.9E-05 41.9 3.7 46 46-95 197-243 (258)
373 PF06962 rRNA_methylase: Putat 85.9 0.76 1.6E-05 38.0 3.0 105 253-380 1-127 (140)
374 PF08221 HTH_9: RNA polymerase 85.6 0.76 1.6E-05 32.3 2.5 43 48-94 17-59 (62)
375 PF03444 HrcA_DNA-bdg: Winged 85.3 1.5 3.2E-05 32.3 3.9 51 57-112 22-72 (78)
376 COG1733 Predicted transcriptio 85.3 1.7 3.7E-05 35.0 4.7 78 22-113 10-91 (120)
377 COG3510 CmcI Cephalosporin hyd 85.3 7.9 0.00017 33.8 8.9 104 227-332 69-188 (237)
378 PF10007 DUF2250: Uncharacteri 85.3 1.2 2.7E-05 33.9 3.6 46 45-94 8-53 (92)
379 PF07109 Mg-por_mtran_C: Magne 85.2 4.2 9E-05 31.3 6.5 78 293-384 3-88 (97)
380 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.8 1.6 3.5E-05 40.8 5.1 101 225-325 83-220 (283)
381 PRK10906 DNA-binding transcrip 84.7 0.95 2.1E-05 41.6 3.4 45 46-94 7-51 (252)
382 TIGR01321 TrpR trp operon repr 84.3 3.1 6.6E-05 31.8 5.4 42 41-87 39-80 (94)
383 PF05971 Methyltransf_10: Prot 84.2 1.6 3.4E-05 41.1 4.6 73 228-301 103-193 (299)
384 PRK10411 DNA-binding transcrip 83.4 1.6 3.5E-05 39.8 4.3 44 47-94 7-50 (240)
385 TIGR00498 lexA SOS regulatory 83.2 1.8 4E-05 38.1 4.5 51 46-104 8-64 (199)
386 PF04182 B-block_TFIIIC: B-blo 83.0 1.4 3.1E-05 32.2 3.1 46 45-94 3-50 (75)
387 PF13404 HTH_AsnC-type: AsnC-t 82.8 1.5 3.3E-05 28.1 2.8 38 45-86 4-41 (42)
388 PF14394 DUF4423: Domain of un 82.5 2.1 4.6E-05 36.8 4.5 46 59-111 40-87 (171)
389 PF13545 HTH_Crp_2: Crp-like h 82.4 1.1 2.5E-05 32.4 2.4 58 39-106 6-68 (76)
390 TIGR02698 CopY_TcrY copper tra 82.3 2.2 4.8E-05 34.9 4.3 47 45-95 5-55 (130)
391 PTZ00326 phenylalanyl-tRNA syn 82.1 1.3 2.8E-05 44.5 3.4 70 44-118 6-76 (494)
392 PRK13699 putative methylase; P 81.9 5.4 0.00012 36.0 7.1 76 272-377 2-95 (227)
393 COG4565 CitB Response regulato 81.9 1.6 3.4E-05 38.6 3.4 34 58-95 173-206 (224)
394 PRK10434 srlR DNA-bindng trans 81.6 1.4 3E-05 40.6 3.2 45 46-94 7-51 (256)
395 PF13730 HTH_36: Helix-turn-he 81.2 1.3 2.9E-05 29.9 2.3 30 59-92 26-55 (55)
396 PF02153 PDH: Prephenate dehyd 81.0 2.8 6.1E-05 38.6 5.0 75 241-321 1-76 (258)
397 PRK05638 threonine synthase; V 81.0 2 4.4E-05 43.0 4.4 63 46-113 373-438 (442)
398 PRK04214 rbn ribonuclease BN/u 80.9 2.2 4.7E-05 42.3 4.5 44 57-107 309-352 (412)
399 PRK11886 bifunctional biotin-- 80.9 2.1 4.7E-05 40.7 4.3 58 46-109 6-63 (319)
400 PF11599 AviRa: RRNA methyltra 80.8 8.7 0.00019 34.2 7.6 99 226-324 50-214 (246)
401 PF05584 Sulfolobus_pRN: Sulfo 80.7 3 6.5E-05 30.1 3.9 42 48-94 9-50 (72)
402 PRK09802 DNA-binding transcrip 80.6 1.6 3.6E-05 40.5 3.3 46 45-94 18-63 (269)
403 PF05711 TylF: Macrocin-O-meth 80.2 2 4.4E-05 39.2 3.7 99 227-326 74-214 (248)
404 cd00315 Cyt_C5_DNA_methylase C 80.1 12 0.00026 34.8 9.0 122 230-375 2-140 (275)
405 PRK09424 pntA NAD(P) transhydr 79.8 14 0.0003 37.6 9.8 96 226-325 163-286 (509)
406 COG1497 Predicted transcriptio 79.5 2.3 5.1E-05 38.1 3.7 51 57-114 24-74 (260)
407 PF13384 HTH_23: Homeodomain-l 79.5 1.4 3E-05 29.1 1.8 41 45-91 6-46 (50)
408 COG1063 Tdh Threonine dehydrog 79.4 12 0.00025 36.2 8.9 94 228-329 169-274 (350)
409 COG0287 TyrA Prephenate dehydr 79.1 9.3 0.0002 35.7 7.8 88 229-321 4-95 (279)
410 PF05732 RepL: Firmicute plasm 78.5 2.3 5E-05 36.4 3.3 45 58-109 75-119 (165)
411 PRK07502 cyclohexadienyl dehyd 78.4 11 0.00023 35.7 8.2 90 228-322 6-98 (307)
412 TIGR02787 codY_Gpos GTP-sensin 78.3 3.1 6.8E-05 37.5 4.2 43 48-94 187-230 (251)
413 PF05430 Methyltransf_30: S-ad 78.3 2.1 4.5E-05 34.7 2.8 54 304-390 70-123 (124)
414 PF13518 HTH_28: Helix-turn-he 78.3 2.9 6.2E-05 27.6 3.2 37 49-91 5-41 (52)
415 COG1349 GlpR Transcriptional r 78.0 2.3 5E-05 39.1 3.4 44 47-94 8-51 (253)
416 PRK09775 putative DNA-binding 77.7 2.6 5.7E-05 42.0 3.9 52 49-107 5-56 (442)
417 PF00392 GntR: Bacterial regul 77.6 2.6 5.5E-05 29.6 2.9 33 58-94 23-56 (64)
418 COG1255 Uncharacterized protei 77.6 23 0.0005 28.2 8.2 85 226-323 12-101 (129)
419 COG3413 Predicted DNA binding 77.5 2.1 4.6E-05 38.2 3.0 43 36-85 159-201 (215)
420 KOG1501 Arginine N-methyltrans 77.4 2.5 5.5E-05 41.3 3.6 49 228-277 67-123 (636)
421 PF01358 PARP_regulatory: Poly 76.9 12 0.00027 34.7 7.7 80 226-329 57-140 (294)
422 PF12692 Methyltransf_17: S-ad 76.6 11 0.00025 31.3 6.6 103 217-326 20-136 (160)
423 PRK10742 putative methyltransf 75.7 6.1 0.00013 36.0 5.4 40 217-259 77-118 (250)
424 PRK09954 putative kinase; Prov 75.7 3.2 7E-05 40.2 3.9 44 46-93 5-48 (362)
425 COG3682 Predicted transcriptio 75.5 4.3 9.3E-05 32.7 3.8 62 44-107 6-67 (123)
426 PF08784 RPA_C: Replication pr 75.5 2.2 4.7E-05 33.2 2.2 46 44-93 47-96 (102)
427 COG1568 Predicted methyltransf 75.4 6.3 0.00014 36.4 5.3 48 60-115 36-83 (354)
428 KOG2651 rRNA adenine N-6-methy 75.0 5.1 0.00011 38.7 4.8 42 217-259 143-184 (476)
429 TIGR02147 Fsuc_second hypothet 74.8 13 0.00029 34.4 7.5 46 58-110 137-184 (271)
430 COG1565 Uncharacterized conser 74.8 5.7 0.00012 38.2 5.1 60 195-259 50-117 (370)
431 PRK04424 fatty acid biosynthes 74.6 1.9 4E-05 37.7 1.7 45 46-94 9-53 (185)
432 COG5379 BtaA S-adenosylmethion 74.2 4.3 9.4E-05 37.7 4.0 67 260-326 296-368 (414)
433 PF03686 UPF0146: Uncharacteri 74.2 8.7 0.00019 31.1 5.3 87 226-325 12-103 (127)
434 PF12324 HTH_15: Helix-turn-he 74.1 2.9 6.3E-05 30.6 2.3 35 49-87 29-63 (77)
435 smart00531 TFIIE Transcription 73.6 3.5 7.6E-05 34.5 3.1 43 47-93 4-46 (147)
436 PF03428 RP-C: Replication pro 72.9 4 8.7E-05 35.3 3.4 43 58-104 70-113 (177)
437 COG1675 TFA1 Transcription ini 72.4 4.4 9.6E-05 34.9 3.5 45 47-95 21-65 (176)
438 COG0640 ArsR Predicted transcr 71.8 7.6 0.00016 29.1 4.5 52 40-95 21-72 (110)
439 PRK07417 arogenate dehydrogena 71.2 19 0.00042 33.4 7.9 83 230-320 2-87 (279)
440 PF05206 TRM13: Methyltransfer 71.0 10 0.00022 35.0 5.7 35 225-259 16-55 (259)
441 COG3398 Uncharacterized protei 70.3 7.9 0.00017 34.4 4.6 50 41-94 98-147 (240)
442 PF12793 SgrR_N: Sugar transpo 70.2 4.1 8.9E-05 32.5 2.6 33 58-94 19-51 (115)
443 cd01842 SGNH_hydrolase_like_5 69.2 9.5 0.00021 32.9 4.7 41 287-327 52-102 (183)
444 PF02636 Methyltransf_28: Puta 68.9 4.7 0.0001 36.9 3.1 27 302-328 172-198 (252)
445 PRK12423 LexA repressor; Provi 68.6 6.8 0.00015 34.6 4.0 34 58-94 25-58 (202)
446 PRK00135 scpB segregation and 68.2 7.3 0.00016 34.0 4.0 41 47-94 93-133 (188)
447 PF08280 HTH_Mga: M protein tr 68.1 3.9 8.4E-05 28.3 1.8 39 45-87 6-44 (59)
448 COG1654 BirA Biotin operon rep 67.7 8.9 0.00019 28.4 3.7 55 49-110 11-65 (79)
449 PF08222 HTH_CodY: CodY helix- 67.0 6.6 0.00014 26.9 2.6 34 57-94 3-36 (61)
450 PF09681 Phage_rep_org_N: N-te 66.9 7.3 0.00016 31.4 3.5 48 57-111 52-99 (121)
451 PF03965 Penicillinase_R: Peni 66.6 6.2 0.00013 31.3 3.0 51 45-95 4-54 (115)
452 COG2933 Predicted SAM-dependen 66.1 17 0.00038 33.3 6.0 85 225-317 209-296 (358)
453 PF00165 HTH_AraC: Bacterial r 66.0 4.8 0.0001 25.5 1.9 26 58-87 8-33 (42)
454 PF02254 TrkA_N: TrkA-N domain 65.9 7.3 0.00016 30.6 3.3 81 236-322 4-94 (116)
455 PRK09334 30S ribosomal protein 65.8 5.7 0.00012 29.8 2.4 33 58-94 41-73 (86)
456 COG1339 Transcriptional regula 65.7 6.5 0.00014 34.2 3.1 53 58-114 19-71 (214)
457 KOG2539 Mitochondrial/chloropl 65.7 20 0.00044 35.6 6.8 102 227-328 200-319 (491)
458 PF06969 HemN_C: HemN C-termin 65.4 6.4 0.00014 27.6 2.6 50 53-110 15-65 (66)
459 PRK01381 Trp operon repressor; 65.2 9.4 0.0002 29.5 3.6 40 42-86 40-79 (99)
460 KOG0024 Sorbitol dehydrogenase 64.5 59 0.0013 31.0 9.3 96 224-327 166-276 (354)
461 PHA02701 ORF020 dsRNA-binding 64.4 13 0.00027 32.2 4.6 46 45-94 5-51 (183)
462 PF02295 z-alpha: Adenosine de 64.2 3.9 8.4E-05 29.1 1.3 61 44-107 4-64 (66)
463 PRK11753 DNA-binding transcrip 64.1 7.1 0.00015 34.3 3.2 33 58-94 168-200 (211)
464 PRK10046 dpiA two-component re 64.0 8 0.00017 34.5 3.6 42 48-94 166-209 (225)
465 TIGR03879 near_KaiC_dom probab 63.9 5.5 0.00012 28.9 2.0 32 58-93 32-63 (73)
466 PF14740 DUF4471: Domain of un 63.7 8.2 0.00018 36.1 3.6 76 271-375 201-286 (289)
467 TIGR03697 NtcA_cyano global ni 62.9 7.8 0.00017 33.4 3.3 33 58-94 143-175 (193)
468 PRK09391 fixK transcriptional 62.2 12 0.00025 33.7 4.4 33 58-94 179-211 (230)
469 PF02796 HTH_7: Helix-turn-hel 61.9 7.5 0.00016 25.1 2.2 30 49-84 14-43 (45)
470 PRK11639 zinc uptake transcrip 61.9 16 0.00036 31.2 5.0 53 43-95 25-79 (169)
471 KOG1098 Putative SAM-dependent 61.4 65 0.0014 33.4 9.5 86 216-326 33-119 (780)
472 PRK06719 precorrin-2 dehydroge 60.9 67 0.0014 27.0 8.5 79 227-313 12-93 (157)
473 PRK08507 prephenate dehydrogen 60.8 32 0.0007 31.8 7.2 83 230-320 2-87 (275)
474 PF01475 FUR: Ferric uptake re 60.7 7.3 0.00016 31.1 2.5 53 43-95 7-61 (120)
475 PRK11161 fumarate/nitrate redu 60.6 8.7 0.00019 34.4 3.2 41 58-106 184-224 (235)
476 PF09107 SelB-wing_3: Elongati 60.3 12 0.00026 25.0 3.0 41 51-95 3-43 (50)
477 COG1510 Predicted transcriptio 60.3 8.8 0.00019 32.7 2.9 34 57-94 40-73 (177)
478 TIGR01202 bchC 2-desacetyl-2-h 60.3 50 0.0011 30.9 8.5 86 227-325 144-232 (308)
479 PRK10736 hypothetical protein; 59.8 10 0.00023 36.8 3.7 51 47-105 311-361 (374)
480 PF14502 HTH_41: Helix-turn-he 59.7 19 0.00041 23.8 3.7 34 58-95 6-39 (48)
481 PRK13918 CRP/FNR family transc 59.4 11 0.00024 32.8 3.6 33 58-94 149-181 (202)
482 TIGR00561 pntA NAD(P) transhyd 59.3 31 0.00068 35.1 7.1 91 227-321 163-281 (511)
483 COG5631 Predicted transcriptio 58.7 30 0.00064 29.2 5.6 72 36-110 68-147 (199)
484 PHA03108 poly(A) polymerase sm 58.6 64 0.0014 29.9 8.2 79 228-329 61-143 (300)
485 PRK00215 LexA repressor; Valid 57.8 15 0.00033 32.3 4.2 35 58-95 23-57 (205)
486 PHA02591 hypothetical protein; 57.4 12 0.00026 27.3 2.8 29 51-84 53-81 (83)
487 PRK15001 SAM-dependent 23S rib 57.3 66 0.0014 31.5 8.8 90 229-326 46-144 (378)
488 PF03297 Ribosomal_S25: S25 ri 57.0 9.6 0.00021 29.8 2.4 33 58-94 59-91 (105)
489 cd08254 hydroxyacyl_CoA_DH 6-h 57.0 1.2E+02 0.0025 28.4 10.5 91 225-325 163-264 (338)
490 PF05331 DUF742: Protein of un 56.8 15 0.00031 29.3 3.4 40 49-94 48-87 (114)
491 TIGR03338 phnR_burk phosphonat 56.6 18 0.0004 31.8 4.6 33 58-94 34-66 (212)
492 PRK11642 exoribonuclease R; Pr 56.6 14 0.00031 39.9 4.4 55 49-106 24-79 (813)
493 COG3398 Uncharacterized protei 56.5 13 0.00028 33.1 3.4 66 40-109 170-235 (240)
494 TIGR03826 YvyF flagellar opero 56.5 12 0.00025 30.9 2.9 32 49-84 35-68 (137)
495 PRK11534 DNA-binding transcrip 56.4 15 0.00033 32.7 4.1 33 58-94 30-62 (224)
496 COG0686 Ald Alanine dehydrogen 56.0 34 0.00073 32.4 6.1 91 228-321 168-265 (371)
497 TIGR01714 phage_rep_org_N phag 55.9 15 0.00033 29.4 3.5 47 57-110 50-96 (119)
498 PRK09462 fur ferric uptake reg 55.1 18 0.00038 30.2 4.0 53 43-95 16-71 (148)
499 PF09821 AAA_assoc_C: C-termin 55.1 9.7 0.00021 30.6 2.2 46 63-116 2-47 (120)
500 PF10668 Phage_terminase: Phag 54.9 12 0.00025 26.1 2.2 25 55-83 19-43 (60)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=8e-44 Score=327.86 Aligned_cols=338 Identities=46% Similarity=0.801 Sum_probs=300.9
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhcc-CCCCCCCcHHHHHHHHhcCcceeecccC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~-~~~~~~~~l~r~L~~L~~~gll~~~~~~ 98 (390)
++.+..-+++++++++..++++.+|+|||+||+|++.++ +.|+|..+.. .++.++..+.|+||.|++.+++++...+
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 345667789999999999999999999999999999643 8888888773 2445888999999999999999875333
Q ss_pred CCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC
Q 016366 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG 178 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~ 178 (390)
.+ .|++++.++.+....+..++..++...+++..++.|. .|.++++.+.
T Consensus 80 ~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~------------------------------~l~dai~eg~ 128 (342)
T KOG3178|consen 80 GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQ------------------------------FLKDAILEGG 128 (342)
T ss_pred ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHH------------------------------HHHHHHHhcc
Confidence 23 8999999998887766667889998888899999998 8999999999
Q ss_pred chhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEec
Q 016366 179 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 258 (390)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D 258 (390)
.++...+|...++|...+......|+++|...+..+.+.+++.+.+++.....+|+|+|.|..+..++..||+++++.+|
T Consensus 129 ~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infd 208 (342)
T KOG3178|consen 129 DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD 208 (342)
T ss_pred cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecC
Confidence 99999999889999999988889999999999998888888888878889999999999999999999999999999999
Q ss_pred chHHHhhCCCC-CCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC-CcchH
Q 016366 259 LPHVVQDAPSY-AGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP-EVSSA 336 (390)
Q Consensus 259 l~~~~~~a~~~-~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~ 336 (390)
+|.+++.+... +.|+.+.||++++.|.+|+||+.++||||+|++|.++|+||++.|+|||++++.|.+.++.. .....
T Consensus 209 lp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~ 288 (342)
T KOG3178|consen 209 LPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDID 288 (342)
T ss_pred HHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccc
Confidence 99999999988 89999999999999999999999999999999999999999999999999999999888632 22222
Q ss_pred HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 337 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 337 ~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
......+|+.|+.++.+|++|+..|++.++.++||.+.++...+..+++|+.+|
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 345668899999988789999999999999999999999999999999999887
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.4e-38 Score=291.62 Aligned_cols=237 Identities=30% Similarity=0.631 Sum_probs=206.5
Q ss_pred CCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCC
Q 016366 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGG 178 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~ 178 (390)
++++|++|+.|..|+.+++..++..++.+...+.++..|. +|.+++++|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~L~~~v~~g~ 51 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWF------------------------------RLTEAVRTGK 51 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGG------------------------------GHHHHHHHSS
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHH------------------------------HHHhhhccCC
Confidence 5789999999999998887567777777766777777776 9999999999
Q ss_pred chhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHH-HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 179 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
++|...+|.++|+++.++|+..+.|+.+|...+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++
T Consensus 52 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~ 130 (241)
T PF00891_consen 52 PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVF 130 (241)
T ss_dssp -HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE
T ss_pred CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceee
Confidence 9999999988999999999999999999999998777 77778777 899999999999999999999999999999999
Q ss_pred cchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCC--cEEEEEecccCCCCCcch
Q 016366 258 DLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGN--GKVIVMNSIVPEIPEVSS 335 (390)
Q Consensus 258 Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~ 335 (390)
|+|.+++.+++.+||+++.||+++++|.+|+|+++++||+|+|+++.++|++++++|+|| |+|+|.|.+.++......
T Consensus 131 Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 131 DLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp E-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHH
T ss_pred ccHhhhhccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCch
Confidence 999999999988999999999999888899999999999999999999999999999999 999999999988765543
Q ss_pred HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 336 AARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 336 ~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
.......+|+.|++.+ +|++||.+||++||+
T Consensus 211 ~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 211 SAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 3323468999999988 699999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.6e-37 Score=294.44 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCC
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~ 116 (390)
..++|++|+++||||.|.+ ||.|++|||+++|+ +++.++|+|++|+++|++++ ++++|++|+.+..++.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4679999999999999987 69999999999999 99999999999999999995 568999999998777665
Q ss_pred CCCC---hHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhc
Q 016366 117 DGAS---LGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYA 193 (390)
Q Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~ 193 (390)
++.+ +..+..+.. ......| .+|.+++++ ++++...++ +.
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~------------------------------~~l~~~~r~-~~~~~~~~~-----~~ 116 (306)
T TIGR02716 74 PKEPNLHQTPVAKAMA-FLADDFY------------------------------MGLSQAVRG-QKNFKGQVP-----YP 116 (306)
T ss_pred ccchhhhcCchHHHHH-HHHHHHH------------------------------HhHHHHhcC-CcccccccC-----CC
Confidence 5321 111211110 0011223 388888874 344432222 11
Q ss_pred ccCchHHHHHHHHHh-hccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC---
Q 016366 194 SGNPRFNETYHEAMF-NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--- 269 (390)
Q Consensus 194 ~~~~~~~~~~~~~m~-~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--- 269 (390)
...+.. ..|...|. .......+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 117 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~ 194 (306)
T TIGR02716 117 PVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 194 (306)
T ss_pred CCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHh
Confidence 112222 23333343 333444556667666 778899999999999999999999999999999999998877642
Q ss_pred ----CCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-h
Q 016366 270 ----AGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-L 343 (390)
Q Consensus 270 ----~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~ 343 (390)
+||+++.+|+++ ++|.+|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++...+ ........ .
T Consensus 195 ~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~ 273 (306)
T TIGR02716 195 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYIL 273 (306)
T ss_pred CCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHH
Confidence 689999999997 6776799999999999999988999999999999999999999887654322 11111111 1
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...|... -...++.++|.++|+++||+.+++.
T Consensus 274 ~~~~~~~--~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 274 GAGMPFS--VLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred Hcccccc--cccCCCHHHHHHHHHHcCCCeeEec
Confidence 1111111 1123458999999999999988753
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=3.2e-18 Score=153.46 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=123.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
+.+.+... ..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++. .+|+|+.+|+++ |+|++
T Consensus 41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s 119 (238)
T COG2226 41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNS 119 (238)
T ss_pred HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCc
Confidence 34444443 34678999999999999999999999999999999 8899999874 239999999999 99976
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-hhhhc----C--------
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRD----G-------- 352 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~-------- 352 (390)
|+|.+++.|++++|.+ ++|++++|+|||||++++.|...+..+... .....+... .+... .
T Consensus 120 FD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~y 194 (238)
T COG2226 120 FDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEY 194 (238)
T ss_pred cCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHH
Confidence 9999999999999866 899999999999999999999887653221 111111111 11111 0
Q ss_pred ----CCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 353 ----GGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 353 ----~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
.-..++.+++.++++++||+.+.......
T Consensus 195 L~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~ 227 (238)
T COG2226 195 LAESIRRFPDQEELKQMIEKAGFEEVRYENLTF 227 (238)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCceEEeeEeeee
Confidence 11346899999999999999888665553
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=3.5e-17 Score=151.41 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=118.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC--cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|+++ ++++++++|+.+ |++.+ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999999875 6778999998 8899887642 479999999988 77764 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-hhhhh--h-hhcCC-----------Cc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLL--M-TRDGG-----------GR 355 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~d~~~--~-~~~~~-----------g~ 355 (390)
+.+++|++++.. ++|++++++|||||++++.|...++.+... ....+ +...+ . ..... ..
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999998765 899999999999999999998765532111 11000 00000 0 00000 23
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecCCcee-EEEE
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCVCNLY-IMEF 388 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~-vi~~ 388 (390)
.++.+++.++++++||+.++......+.. +..+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 56999999999999999999888764443 4433
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=4.4e-19 Score=160.57 Aligned_cols=167 Identities=22% Similarity=0.368 Sum_probs=84.9
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-- 286 (390)
+++... ..++.+|||+|||+|..+..++++. |+.+++++|+ +.|++.+++. .+|+++++|+++ |++++
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 344343 5667899999999999999999875 6789999998 8999998852 589999999998 88875
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh-hhhhhhh--hh--hcCC--------
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-SLLDVLL--MT--RDGG-------- 353 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~--~~--~~~~-------- 353 (390)
|+|++++.+|+++|.. +.|++++|+|||||+++|.|...+..+. ..... ..+...+ .. ...+
T Consensus 118 D~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL---LRALYKFYFKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp EEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH---HHHHHHH------------------------
T ss_pred eEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch---hhceeeeeecccccccccccccccccccccc
Confidence 9999999999999866 7899999999999999999998776421 11100 1111000 00 0000
Q ss_pred ---CcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 354 ---GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 354 ---g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
...++.+++.++++++||+.++..+...+ ..+..++|
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 13457899999999999999988777643 34444443
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=2.5e-18 Score=157.38 Aligned_cols=159 Identities=13% Similarity=0.198 Sum_probs=120.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~v 294 (390)
.+..+|||||||+|.++..+++++ |+.+++++|+ +.|++.++++ .+++++++|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 7899999999 8899888652 368999999988 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-----------------hhhcCCCccc
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-----------------MTRDGGGRER 357 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-----------------~~~~~~g~~~ 357 (390)
+|++++++...+|++++++|+|||.+++.|.+.++++..... ...+.+ ..........
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999998888899999999999999999999876554321100 011100 0000022457
Q ss_pred CHHHHHHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 358 TKKEYTELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
|.+++.++++++||+.+++......+.+..++
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 99999999999999988766555555544444
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=8.3e-17 Score=146.51 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=124.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~~ 286 (390)
..++..+. ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34555565 6677899999999999999999885 6789999998 788877664 2579999999987 66654
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh-hhhh----------------hh
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDV----------------LL 347 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~----------------~~ 347 (390)
|+|++..++|++++.. ++|+++.+.|+|||++++.+...++.+. ...... .+.. ..
T Consensus 114 ~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 9999999999998765 8999999999999999998876544211 100000 0000 00
Q ss_pred hhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 348 MTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 348 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
+... ....++.++++++|+++||+++++.... +..+++.++|
T Consensus 189 ~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1234688999999999999999998887 6666777776
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.2e-17 Score=153.45 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=114.1
Q ss_pred CCcceEEEEcCCccHHHHHHHh--hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITS--KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~--~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~v 294 (390)
.+..+|||||||+|..+..+++ .+|+.+++++|+ +.|++.++++ .+++++++|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999888 468999999998 8899988753 379999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-----------h-h-hhcCCCcccCHHH
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-----------L-M-TRDGGGRERTKKE 361 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~-~-~~~~~g~~~t~~e 361 (390)
+|++++++...++++++++|+|||.+++.|.+..++...... ....+.+.. - . .....-...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999776554322110 000010000 0 0 0000122348999
Q ss_pred HHHHHHHCCCCeeEEEec
Q 016366 362 YTELAIAAGFKGINFASC 379 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~ 379 (390)
..++|+++||+.+..+..
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999998765443
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.74 E-value=9.3e-17 Score=148.69 Aligned_cols=155 Identities=18% Similarity=0.307 Sum_probs=119.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .++++++++|+.+ ++|.+ |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 46667666 6788899999999999999998775 578999998 778877765 2579999999987 77754 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++..+++|++.++...+|++++++|+|||++++.+........ +...... .... ......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEFKA-----YIKK-RKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHHHH-----HHHh-cCCCCCCHHHHHHHHH
Confidence 999999998888666779999999999999999999987654211 1111111 1110 1223468999999999
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
++||++++...+.
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999988765
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=1.5e-16 Score=147.10 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=112.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCC-C-cEEEec
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE-G-DAILMK 292 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~-~-D~i~~~ 292 (390)
..+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++. +++++++|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEEe
Confidence 46677776 56778999999999999999999999999999999 8899988763 699999999763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh---hhhhhh-hhhhcCCCcccCHHHHHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET---SLLDVL-LMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
.++|++++.. +++++++++|+|||++++........+......... .+.... ...........+.+++.++|++
T Consensus 97 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 9999998765 899999999999999998643211111000000000 010000 0000012335689999999999
Q ss_pred CCCCeeEE
Q 016366 369 AGFKGINF 376 (390)
Q Consensus 369 aGf~~~~~ 376 (390)
+||++...
T Consensus 175 aGf~v~~~ 182 (255)
T PRK14103 175 AGCKVDAW 182 (255)
T ss_pred CCCeEEEE
Confidence 99985443
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=4.2e-16 Score=149.59 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=111.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 566899999999999999999987 678999998 7777766542 579999999988 77754 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC-cchH-HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VSSA-ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-~~~~-~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
+||+++.. +++++++++|||||+++|.+........ .... ......++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 99998865 8999999999999999998876433211 1000 000111111111100 11235899999999999999
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887664
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.69 E-value=4.9e-16 Score=136.90 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=123.7
Q ss_pred HHHHHHHh-hccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC------CeEEEecc-hHHHhhCCCC---
Q 016366 201 ETYHEAMF-NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY--- 269 (390)
Q Consensus 201 ~~~~~~m~-~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~------~~~~~~Dl-~~~~~~a~~~--- 269 (390)
...+++|+ ...+.+-.-....+. .....++||++||||..+..+.+.-+. .+++++|+ |+|++.++++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 45566666 334444333444444 455689999999999999999998776 78999999 9998877653
Q ss_pred ------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh
Q 016366 270 ------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 340 (390)
Q Consensus 270 ------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 340 (390)
.+++++++|+++ |+|.+ |.+++.+-+.++++.+ +.|++++|+|||||++.+.|+-.-+++. ..++.
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy 227 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWFY 227 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHHH
Confidence 459999999999 99976 9999999999999977 8999999999999999999986544211 11111
Q ss_pred --hhhhh---------------hhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 341 --SLLDV---------------LLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 341 --~~~d~---------------~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.+++. ..++.. -.+.++.+++..+.+++||+.+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 11111 001110 12456889999999999999887
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=1.9e-15 Score=143.35 Aligned_cols=140 Identities=24% Similarity=0.379 Sum_probs=111.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999998 7888887763 579999999987 66653 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.+ ++|++++++|+|||++++.+...++. +... ...+..+ ..++.+++.++++++||+.+++..
T Consensus 192 ~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9876 78999999999999999887654331 1111 0111111 135799999999999999999887
Q ss_pred cC
Q 016366 379 CV 380 (390)
Q Consensus 379 ~~ 380 (390)
+.
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 65
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=4.5e-15 Score=135.46 Aligned_cols=169 Identities=14% Similarity=0.241 Sum_probs=122.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
..++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 34455554 44568999999999999999999987 789999998 6777766652 468999999987 5443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh----hhcCC------
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM----TRDGG------ 353 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~------ 353 (390)
+ |+|++.+++|++++.. .+|+++.+.|+|||++++.+...+.... ...........++ ....+
T Consensus 120 ~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYS 194 (239)
T ss_pred CCccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence 3 9999999999998755 8899999999999999999887654321 0000000000000 00001
Q ss_pred ------CcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 354 ------GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 354 ------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 124578999999999999999998876 5667777765
No 16
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.3e-15 Score=139.10 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=128.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. +.++.+|||||||.|.+++.++++| +++++++++ ++..+.++++ .+|++.-.|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 356777777 8999999999999999999999999 899999998 6666665541 47999999887643336
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|-|++...++|+..+.-..+++++++.|+|||++++.....++.+.. ...++..-..+|+|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999888999999999999999999999887664321 12233334446899999999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||.+.......
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999998876654
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=2.2e-15 Score=151.60 Aligned_cols=152 Identities=16% Similarity=0.281 Sum_probs=117.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-- 286 (390)
..+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++ .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44666665 5667899999999999999998876 678999998 7788877542 479999999988 66654
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..+++|+++.. ++|++++++|+|||++++.+........... .... ... .+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~~--~~~-~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPE------FAEY--IKQ-RGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHH------HHHH--HHh-cCCCCCCHHHHHHHH
Confidence 9999999999998865 8999999999999999999887644221111 1111 111 144577899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+++++....
T Consensus 403 ~~aGF~~i~~~d~~ 416 (475)
T PLN02336 403 KDAGFDDVIAEDRT 416 (475)
T ss_pred HHCCCeeeeeecch
Confidence 99999998776543
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=1.1e-14 Score=131.56 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=120.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D 287 (390)
.+++.+. ..+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999987 78999998 6777766542 579999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc-------CC-------
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-------GG------- 353 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~------- 353 (390)
+|++.+++|+.++.. .+|+++++.|+|||++++.+...+.... ...........++... .+
T Consensus 109 ~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred EEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 999999999988755 8999999999999999998876543210 1000000000010000 00
Q ss_pred --CcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 354 --GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 354 --g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
....+.++|.++|+++||+.+++.++.+. ..+++++|
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999998866 44666554
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=6.5e-15 Score=140.01 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=109.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC-------CCCCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~-------~~~rv~~~~gd~~~-~~p~~- 286 (390)
.++..++ ...+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+|+++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444554 234589999999999999999998765 5899997 44443321 13579999999987 65444
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||..+.. .+|+++++.|+|||.+++.+.+.+........ ..... ..|.. .-..++.+++.+++
T Consensus 191 D~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y--~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRY--AKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHH--hcCcc---ceeCCCHHHHHHHH
Confidence 9999999999988765 89999999999999999877665543221100 00000 00100 11246899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999887653
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.63 E-value=7.4e-15 Score=138.24 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=109.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC-------CCCCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~-------~~~rv~~~~gd~~~-~~p~~- 286 (390)
.++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4455554 345689999999999999999988764 6899997 55554321 23578888888876 43334
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||++++. .+|++++++|+|||.|++.+...+......... ......|.. .-..++.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 9999999999998875 899999999999999999887665432110000 000001110 11246899999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+.+++....
T Consensus 262 ~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 262 EKVGFENFRILDVL 275 (314)
T ss_pred HHCCCeEEEEEecc
Confidence 99999999887553
No 21
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=3.3e-15 Score=138.33 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=111.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~ 286 (390)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+.-+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 346677776 8889999999999999999999998 789999998 555555442 257999999987522244
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|.|++...+.|+.......+++++.+.|+|||++++...+..+.+.. .......++.....+|+|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888899999999999999999988776553110 000001123333345799999999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999999887664
No 22
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.63 E-value=4.3e-15 Score=127.04 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=97.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.....+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+.. |+|++.++|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977644 8889998 777776 223333333223 23333 99999999999997
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhh-cCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.. .+|+++++.|+|||++++.++..... .... .....+... ......++.++|+++++++||++++
T Consensus 94 ~~--~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKPGGYLVISDPNRDDP----SPRS---FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEEEEEEEEEEEBTTSH----HHHH---HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCCCCEEEEEEcCCcch----hhhH---HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 55 99999999999999999999875431 0111 111111110 0244678999999999999999875
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=1.4e-15 Score=143.66 Aligned_cols=146 Identities=14% Similarity=0.038 Sum_probs=105.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
...+|||||||+|.++..+++. +.+++++|. +.+++.++++ .+|+++++|+.+ +.+.+ |+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988863 578999998 7888887642 378999999876 54443 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc---CCCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD---GGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~g~~~t~~e~~~ll~~aGf~ 372 (390)
||+++.. .+|++++++|+|||.+++.+...... ...........+..+... ...+.++.+++.++|+++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999876 89999999999999999887542210 000000000001111100 012467999999999999999
Q ss_pred eeEEEec
Q 016366 373 GINFASC 379 (390)
Q Consensus 373 ~~~~~~~ 379 (390)
++++..+
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9988544
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.62 E-value=3.8e-15 Score=128.19 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=130.5
Q ss_pred HHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCC
Q 016366 203 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMF 280 (390)
Q Consensus 203 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~ 280 (390)
|.+.-...++. +.+++..++ .....+|+|+|||+|..+..+++++|+..++++|- ++|++.|+++ ++++|..+|+.
T Consensus 8 Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 33333333433 357888888 88899999999999999999999999999999998 9999999864 89999999998
Q ss_pred CCCCC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh---hhhhhhc---C
Q 016366 281 ESVPE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD---VLLMTRD---G 352 (390)
Q Consensus 281 ~~~p~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d---~~~~~~~---~ 352 (390)
+..|+ .|+++.+-+||+++|.- ++|.++...|.|||.|.+. +|++........+....+ +-..... .
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred hcCCCCccchhhhhhhhhhccccH--HHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 85554 39999999999999976 8999999999999998873 333322211100000000 1010000 1
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEe------cCCceeEEEEeC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFAS------CVCNLYIMEFFK 390 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~------~~~~~~vi~~~k 390 (390)
.....+.+.|-++|...+-++ .+++ +++...|++|+|
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred cCCCCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhhee
Confidence 334568999999998887554 4433 347778888876
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2.3e-14 Score=132.68 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=110.0
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCCCCC-CC-cEEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-EG-DAIL 290 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~~~p-~~-D~i~ 290 (390)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 346677766 66778999999999999999999999999999998 8899988764 679999999976333 33 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh--hhhhhhhhc-CCCcccCHHHHHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL--LDVLLMTRD-GGGRERTKKEYTELAI 367 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~g~~~t~~e~~~ll~ 367 (390)
++.++|+.++.. ++|++++++|+|||++++..+.....+........... ....+.... ......+.+++.+++.
T Consensus 99 ~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCCHH--HHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999998765 89999999999999988853211110100000000000 000000000 0123467889999999
Q ss_pred HCCCCe
Q 016366 368 AAGFKG 373 (390)
Q Consensus 368 ~aGf~~ 373 (390)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999875
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.62 E-value=5.6e-15 Score=133.81 Aligned_cols=136 Identities=14% Similarity=0.298 Sum_probs=107.4
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEeccccccC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHCW 298 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 298 (390)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 777776664 2578999999976 55554 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.. .+|++++++|+|||++++.+...+...... . + .. .....+.++|.++++++||++++...
T Consensus 81 ~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~-------~-----~~-~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDKM--DLFSNISRHLKDGGHLVLADFIANLLSAIE-H-------E-----ET-TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCHH--HHHHHHHHHcCCCCEEEEEEcccccCcccc-c-------c-----cc-ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 8754 899999999999999999987543211000 0 0 00 12246899999999999999998877
Q ss_pred cC
Q 016366 379 CV 380 (390)
Q Consensus 379 ~~ 380 (390)
+.
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 65
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.6e-14 Score=134.70 Aligned_cols=145 Identities=19% Similarity=0.324 Sum_probs=110.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~ 293 (390)
+....+|||||||+|..+..+++. .++.+++++|+ +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 557789999999999988877775 46678999998 8888888752 589999999987 66653 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
++|++++.. ++|++++++|+|||++++.+....... +. . ...+..++... .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 999988755 899999999999999999988754321 11 1 11122222211 344568999999999999999
Q ss_pred eEEEe
Q 016366 374 INFAS 378 (390)
Q Consensus 374 ~~~~~ 378 (390)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=2.9e-15 Score=120.28 Aligned_cols=97 Identities=22% Similarity=0.385 Sum_probs=82.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCC-CC-CCCCC-cEEEecc-cc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM-FE-SVPEG-DAILMKW-IL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~-~~-~~p~~-D~i~~~~-vl 295 (390)
+.+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++|+++++|+ .. +.+.. |+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999998 888887765 27899999999 43 34444 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDD-DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65443 577899999999999999999865
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=3.2e-14 Score=129.70 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=112.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-- 286 (390)
.++..+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++. .++++..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3445555 6677899999999999999999988 7889999998 6777766543 578999999887 66543
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC-CcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP-EVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++.++++++++.. .+++++++.|+|||++++.+....... ............... ... .....+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDH-FADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH--Hhc-CCCCcHHHHHHHH
Confidence 9999999999998865 889999999999999999886432210 000000111111111 101 2233456789999
Q ss_pred HHHCCCCeeEEEec
Q 016366 366 AIAAGFKGINFASC 379 (390)
Q Consensus 366 l~~aGf~~~~~~~~ 379 (390)
++++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998876543
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=2.5e-15 Score=127.75 Aligned_cols=139 Identities=20% Similarity=0.317 Sum_probs=101.9
Q ss_pred CCcceEEEEcCCccHHHHHHH-hhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~-D~i~~~~ 293 (390)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|+++|+++ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5688999999998 889998886 2689999999998 5 4434 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
++|++++.. .+|+++.+.|++||.+++.+........ ........ .....+.....+. +.++|..+|++||
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELP-EQLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHH-HHHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHH-HHHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 999999876 8899999999999999998887322100 01111111 1111111111122 7889999999998
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=2.2e-14 Score=127.26 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=105.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. .++++..+|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999986 457899998 7788876642 458899999987 55554
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++|++++++...++++++++|+|||++++.+....++... . . +-...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-~-----~----------~~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-T-----V----------GFPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-C-----C----------CCCCccCHHHHHHHh
Confidence 99999999999988888899999999999999987766553332100 0 0 001235788999999
Q ss_pred HHCCCCeeEEE
Q 016366 367 IAAGFKGINFA 377 (390)
Q Consensus 367 ~~aGf~~~~~~ 377 (390)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 6 89987763
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=1.8e-14 Score=133.08 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=107.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC--CCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~--~~p~- 285 (390)
.+++.++ .++.+|||||||+|.++..+++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 456799999999999999999874 57888898 8898887752 578999999866 2333
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcch----HHhhhhhhhhh-hhhhcCCCcccCH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS----AARETSLLDVL-LMTRDGGGRERTK 359 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~----~~~~~~~~d~~-~~~~~~~g~~~t~ 359 (390)
. |+|++..++|+++++. .+|++++++|+|||++++............. .......+... -.... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 9999999999998876 8999999999999999886544221000000 00000000000 00000 0123578
Q ss_pred HHHHHHHHHCCCCeeEEEecC
Q 016366 360 KEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+++.++++++||++++..-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999998766553
No 33
>PRK06922 hypothetical protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=143.18 Aligned_cols=141 Identities=19% Similarity=0.345 Sum_probs=105.9
Q ss_pred ChhhhcccCchHHHHHHHHHhhccHH--HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh
Q 016366 188 HIFEYASGNPRFNETYHEAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 264 (390)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~ 264 (390)
.+|+++..+++..+.|...|...... ........++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.|++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777777776666666555432211 1111122233 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCceEEECCCCC-C--CCCC--cEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 265 DAPSY-----AGVEHVGGNMFE-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 265 ~a~~~-----~rv~~~~gd~~~-~--~p~~--D~i~~~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++. .+++++++|+.+ + ++.+ |+|+++.++|++ ++.+..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 87652 467889999876 4 4443 999999999976 2456789999999999999999999
Q ss_pred ecccCC
Q 016366 324 NSIVPE 329 (390)
Q Consensus 324 e~~~~~ 329 (390)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 986654
No 34
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=3e-13 Score=122.42 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=107.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
...+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++++|+.+ |++++ |+|++..++|+++|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999887 568999998 8999998864 3568899988 77765 9999999999998866
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh--hhhhhhhhhhcCC-----------CcccCHHHHHHHHHHC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET--SLLDVLLMTRDGG-----------GRERTKKEYTELAIAA 369 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~-----------g~~~t~~e~~~ll~~a 369 (390)
++|++++|+|||. +++.+...++.........+. ..+...-.....+ ...++.+++.++++++
T Consensus 128 --~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 128 --KVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred --HHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999993 445555444321100000000 0000010111101 1345889999999998
Q ss_pred CCCeeEEEecCC-ceeEEEEeC
Q 016366 370 GFKGINFASCVC-NLYIMEFFK 390 (390)
Q Consensus 370 Gf~~~~~~~~~~-~~~vi~~~k 390 (390)
| ..++...... -..+..++|
T Consensus 204 ~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 204 A-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred h-CceEEEEccccEEEEEEEee
Confidence 4 6677777764 444655554
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=2.1e-13 Score=125.71 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--c
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D 287 (390)
.....+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++. ..+.++++|+.+ +++.. |
T Consensus 29 ~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 29 QSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 34445666665 445689999999999999888765 467899998 8899988864 446889999988 66654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|+++.++|+.++.. .+|++++++|+|||.+++..+....-+ .....+..+... .......+.+++.+++.
T Consensus 106 ~V~s~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~~~~--~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 106 LAWSNLAVQWCGNLS--TALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAVDER--PHANRFLPPDAIEQALN 176 (251)
T ss_pred EEEECchhhhcCCHH--HHHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHhccC--CccccCCCHHHHHHHHH
Confidence 999999999888765 899999999999999999877643311 000111100000 11234568999999999
Q ss_pred HCCCCe
Q 016366 368 AAGFKG 373 (390)
Q Consensus 368 ~aGf~~ 373 (390)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.5e-13 Score=125.36 Aligned_cols=136 Identities=17% Similarity=0.257 Sum_probs=104.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.+.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 447899999999999999999999999999998 7777766653 478999999987 65543 99999999999877
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.. ++|++++++|+|||++++.++..... .. ..... .. .....++.++|.+++.++ |+.+.+.
T Consensus 114 ~~--~~l~~~~~~L~~~G~l~~~~~~~~~~------~~---~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LS--QALSELARVLKPGGLLAFSTFGPGTL------HE---LRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HH--HHHHHHHHHcCCCcEEEEEeCCccCH------HH---HHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 65 89999999999999999886543321 00 00000 00 134556889999999988 8876553
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=3.5e-13 Score=122.77 Aligned_cols=146 Identities=20% Similarity=0.140 Sum_probs=102.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC-C-cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-G-DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~-~-D~i~~~~v 294 (390)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++..++... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46679999999999998888763 46679999998 8899888764 457777765544 3333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh-h-h-cCC-----CcccCHHHHHHHH
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-T-R-DGG-----GRERTKKEYTELA 366 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-----g~~~t~~e~~~ll 366 (390)
+||+++++...+|+++++.++ |.+++.+...+.. .. ........... . . ..+ .+.++.+++.+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 999999888899999999998 5666666554321 00 00000000000 0 0 001 2357899999999
Q ss_pred HHCCCCeeEEEec
Q 016366 367 IAAGFKGINFASC 379 (390)
Q Consensus 367 ~~aGf~~~~~~~~ 379 (390)
++ ||++...++.
T Consensus 212 ~~-Gf~~~~~~~~ 223 (232)
T PRK06202 212 PQ-GWRVERQWPF 223 (232)
T ss_pred hC-CCeEEeccce
Confidence 99 9998777665
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=1.8e-14 Score=111.62 Aligned_cols=88 Identities=19% Similarity=0.435 Sum_probs=75.8
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHH
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCL 304 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 304 (390)
||+|||+|.++..++++ +..+++++|. +.+++.+++. .+++++.+|+.+ ++++. |+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 89999999999999999 8889999998 7788887763 557799999998 88865 99999999999955 45
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 016366 305 RILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 305 ~~L~~~~~~L~pgG~lli 322 (390)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999886
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.53 E-value=2.2e-13 Score=122.95 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhcccCchHHHHHHHHHhhccHHHHHHHHHHhhc-cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 191 EYASGNPRFNETYHEAMFNHSTIAMERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 191 ~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
+....++.....+...+..........+++.++. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~ 95 (219)
T TIGR02021 18 ARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARN 95 (219)
T ss_pred HHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 3333333333444444433333334445554442 345789999999999999999886 357888887 888888765
Q ss_pred C-------CCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh
Q 016366 269 Y-------AGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 341 (390)
Q Consensus 269 ~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 341 (390)
+ .++++..+|+.+.....|+|++..++++++++....+++++++.+++++.+.+. +.. .......
T Consensus 96 ~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~----~~~----~~~~~~~ 167 (219)
T TIGR02021 96 RAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA----PKT----AWLAFLK 167 (219)
T ss_pred HHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC----CCc----hHHHHHH
Confidence 2 378999999877333349999999999998877889999999999876554432 111 0101111
Q ss_pred hhhhhhhh--hcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc
Q 016366 342 LLDVLLMT--RDGGGRERTKKEYTELAIAAGFKGINFASCVCN 382 (390)
Q Consensus 342 ~~d~~~~~--~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 382 (390)
.+...... ....-..++.+++.++++++||+++.......+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 168 MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccccc
Confidence 11111000 001123458999999999999999988766543
No 40
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.52 E-value=7e-13 Score=115.52 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=119.9
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecch-HH----HhhCCC--CCCce-EEECCCCCC-CC---------CC-cEEE
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HV----VQDAPS--YAGVE-HVGGNMFES-VP---------EG-DAIL 290 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~----~~~a~~--~~rv~-~~~gd~~~~-~p---------~~-D~i~ 290 (390)
+|||||+|+|..+..+++++|++++.-.|.. .. .+.+.+ .+++. -+..|+.++ .+ .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999999999999777752 22 111111 23332 234455442 22 13 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+.|++|..+.+.+..+++.+.++|+|||.|++.-++..+..- +..-...+|.......+....|+.+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~---ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF---TSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe---CCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999988765421 11223355555544445567899999999999999
Q ss_pred CCeeEEEecCCceeEEEEeC
Q 016366 371 FKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 371 f~~~~~~~~~~~~~vi~~~k 390 (390)
++..+.+.++.++.+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999999988886
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=3.2e-13 Score=119.59 Aligned_cols=140 Identities=10% Similarity=0.099 Sum_probs=102.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ ...+.+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. -++++...|+.. +++.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 445689999999999999999986 357888898 7788876542 136777788765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++|+++++....++++++++|+|||++++.+....+. .+.. . +.....+.+++.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~~-------~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPCH-------M--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCCC-------C--------CcCccCCHHHHHHHhC-
Confidence 999999999988888899999999999999988776543221 0100 0 0122457899999985
Q ss_pred CCCCeeEEE
Q 016366 369 AGFKGINFA 377 (390)
Q Consensus 369 aGf~~~~~~ 377 (390)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58887765
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.8e-14 Score=113.19 Aligned_cols=87 Identities=23% Similarity=0.428 Sum_probs=59.7
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C---CceEEECCCCCCCC-CC-cEEEeccccccCC
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A---GVEHVGGNMFESVP-EG-DAILMKWILHCWD 299 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~---rv~~~~gd~~~~~p-~~-D~i~~~~vlh~~~ 299 (390)
||||||+|.++..+++++|..+++++|+ +.+++.++++ . ++++...|..+..+ .. |+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 8899888874 2 23444445444322 23 9999999999995
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 016366 300 DDHCLRILKNCYKAVPGNGKV 320 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~l 320 (390)
+. ..+|+++++.|+|||+|
T Consensus 81 ~~--~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TSS-EE
T ss_pred hH--HHHHHHHHHHcCCCCCC
Confidence 54 49999999999999986
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.47 E-value=8.1e-13 Score=116.27 Aligned_cols=137 Identities=13% Similarity=0.217 Sum_probs=101.4
Q ss_pred hhccHHHHHH-HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCC
Q 016366 208 FNHSTIAMER-ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 279 (390)
Q Consensus 208 ~~~~~~~~~~-l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~ 279 (390)
...+...+.. ++..+. ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++++ ++++++.+|.
T Consensus 12 ~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 12 VPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred CCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 3344433333 334444 56778999999999999999999999999999998 7788777642 5789999998
Q ss_pred CCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccC
Q 016366 280 FESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358 (390)
Q Consensus 280 ~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t 358 (390)
..+++.. |+|++....++ ...+++.+++.|+|||++++..... .+
T Consensus 91 ~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~ 136 (187)
T PRK08287 91 PIELPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------EN 136 (187)
T ss_pred hhhcCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hh
Confidence 6555544 99998876543 2468999999999999998744321 12
Q ss_pred HHHHHHHHHHCCCCeeEEEec
Q 016366 359 KKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 359 ~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+++.+++++.||+.+++...
T Consensus 137 ~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 137 LHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHHHHHHCCCCcceEEEE
Confidence 456678999999987776443
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=6.4e-14 Score=123.73 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CC--ceEEECCCCC-CCC--CCcEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFE-SVP--EGDAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~r--v~~~~gd~~~-~~p--~~D~i~~~~vlh~ 297 (390)
...+|||||||.|.++..+++.. .+++++|+ +..++.|+.+ .. +++.+...++ ... ..|+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46899999999999999999986 78899998 8899988864 22 4466666655 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-hhhhhcCCC-----cccCHHHHHHHHHHCCC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-LLMTRDGGG-----RERTKKEYTELAIAAGF 371 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~g-----~~~t~~e~~~ll~~aGf 371 (390)
.++++ .+++.|.+.+||||.+++++....... .....+.. ..+-..+.| +...++|...++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka------~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLKA------YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHHH------HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99988 799999999999999999887643211 11111110 011111232 45678999999999999
Q ss_pred CeeEEEec
Q 016366 372 KGINFASC 379 (390)
Q Consensus 372 ~~~~~~~~ 379 (390)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88876554
No 45
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.46 E-value=3.8e-13 Score=127.04 Aligned_cols=105 Identities=10% Similarity=0.209 Sum_probs=83.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-----CC--ceEEECCCCCC--CC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFES--VP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-----~r--v~~~~gd~~~~--~p 284 (390)
+.++..++ ++.+|||+|||+|..+..++++.+ ..+++++|+ ++|++.+++. ++ |.++++|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 457899999999999999999987 588999999 7788777642 33 56789999762 33
Q ss_pred C-----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 ~-----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. . .++++.++++++++++...+|++++++|+|||.++|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 2 3557778999999999999999999999999999873
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=6e-13 Score=133.95 Aligned_cols=144 Identities=16% Similarity=0.274 Sum_probs=110.2
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC---CCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE---SVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~---~~p~~ 286 (390)
...+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ .++++++++|+.+ ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345666665 44567999999999999999998864 6788887 778876653 2579999999964 44543
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++++++..++|+++++.|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999998888999999999999999999998754421100 0 0 01233466889999
Q ss_pred HHHHCCCCeeE
Q 016366 365 LAIAAGFKGIN 375 (390)
Q Consensus 365 ll~~aGf~~~~ 375 (390)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
No 47
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.46 E-value=5.2e-13 Score=123.61 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=85.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH----HHHHHHhhCC-----CCeEEEecc-hHHHhhCCCC----------------
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY---------------- 269 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~----~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~~---------------- 269 (390)
+.+.+..+ ..+..+|+|+|||+|. ++..+++.++ +.+++++|+ +.+++.|++.
T Consensus 89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 44444332 3456799999999996 4556666554 578999998 8899988762
Q ss_pred -----------------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 -----------------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 -----------------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|.++|+.+ +.+.+ |+|+|.++||+++++...+++++++++|+|||++++..
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 268999999998 44443 99999999999998888899999999999999999854
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=9.3e-13 Score=128.05 Aligned_cols=153 Identities=10% Similarity=0.073 Sum_probs=115.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCCCCCC-CcEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVPE-GDAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~~p~-~D~i~ 290 (390)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ .++++...|+.+. +. .|+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 34556665 6777899999999999999998876 578999998 8888877753 2478888887643 33 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+..+++|.++.....++++++++|+|||++++.+...+...... ..+++.. .+++|..++.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999999877777999999999999999999877654321110 1122211 236788889999988866 58
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988877654
No 49
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=3.9e-12 Score=114.69 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=98.5
Q ss_pred HhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh----hCCCCCCceEEECCCCCC-----CCCC-cEE
Q 016366 221 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAI 289 (390)
Q Consensus 221 ~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~----~a~~~~rv~~~~gd~~~~-----~p~~-D~i 289 (390)
.++ ..+..+|||+|||+|.++..+++..+..+++++|+ +.|++ .+++.++|.++.+|+.++ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 345 66788999999999999999999887668899998 66655 445557899999998753 2233 887
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 290 LMKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 290 ~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
++ +.+++ ....+|+++++.|||||+++|.-...+-+ ... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CHH-HHHHHHHHHHHH
Confidence 73 34433 23457899999999999999952211110 000 000 112445699999
Q ss_pred CCCCeeEEEecCCc---eeEEEEe
Q 016366 369 AGFKGINFASCVCN---LYIMEFF 389 (390)
Q Consensus 369 aGf~~~~~~~~~~~---~~vi~~~ 389 (390)
+||++++......+ +..+.++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 99999999887533 5555544
No 50
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=1.1e-12 Score=116.61 Aligned_cols=103 Identities=16% Similarity=0.378 Sum_probs=88.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCCCCCC--cEEEeccccccCCh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d 300 (390)
..+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .+++++..+|+.++++.+ |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667899999999999999999888899999998 889999987 477999999998866554 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
++..++++++++++ ++.++|.+...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88889999999997 5688888876443
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=2.5e-12 Score=112.37 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=104.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-CcEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~D~i~~~~vlh~~ 298 (390)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|..+..+. .|+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 7888887 8888877652 3588899998774333 4999999888766
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 299 DDDH-------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 299 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
++.. ..++|+++.+.|+|||++++++.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------Ch
Confidence 5421 35789999999999999998765321 14
Q ss_pred HHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 360 KEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.++.+++++.||....+...+.++-.+.++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 6678899999999988888877777666664
No 52
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.44 E-value=2.5e-13 Score=120.70 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=104.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------C----CceEEECCCCCCCCCCcEEEeccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFESVPEGDAILMKWI 294 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~----rv~~~~gd~~~~~p~~D~i~~~~v 294 (390)
+.+|||+|||+|.++..|++.. ..++++|+ +.+++.|+++ . |+++.+.|.+...+..|+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3679999999999999999986 66788898 8899988863 2 367777777665555799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhhhhhhc----CCCcccCHHHHHHHHHHC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVLLMTRD----GGGRERTKKEYTELAIAA 369 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~----~~g~~~t~~e~~~ll~~a 369 (390)
++|..|+. .+++.+.+.|+|||+++|.+....-.. +. ....+ +....... ...+..++++...+++.+
T Consensus 168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS---~~--~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILS---FA--GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHH---hh--ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 99998876 999999999999999999877533210 00 00011 11111111 134567999999999999
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
|+++..+.
T Consensus 241 ~~~v~~v~ 248 (282)
T KOG1270|consen 241 GAQVNDVV 248 (282)
T ss_pred Ccchhhhh
Confidence 99887664
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=1.4e-13 Score=108.56 Aligned_cols=88 Identities=18% Similarity=0.399 Sum_probs=73.6
Q ss_pred EEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEec-ccccc
Q 016366 231 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK-WILHC 297 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~-~vlh~ 297 (390)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.++++ .+++++++|+.+ +...+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5688999998 8898888763 489999999988 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 016366 298 WDDDHCLRILKNCYKAVPGNG 318 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG 318 (390)
+++++..++|+++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=3.3e-12 Score=116.05 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=99.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.+..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998764 5888887 7888877652 4789999995333222399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh--hhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL--MTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
++++....+++++.+.+++++. +.... ..+ .. .....+.-.+ ..........+.++|.++++++||++.+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~---~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YTP---LL-ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---ccH---HH-HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 9998888999999998754443 32211 110 00 0000000000 0000122345789999999999999999
Q ss_pred EEecCC
Q 016366 376 FASCVC 381 (390)
Q Consensus 376 ~~~~~~ 381 (390)
+.+...
T Consensus 212 ~~~~~~ 217 (230)
T PRK07580 212 TERISS 217 (230)
T ss_pred eeeccc
Confidence 887763
No 55
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=111.02 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=118.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCce
Q 016366 201 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVE 273 (390)
Q Consensus 201 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~ 273 (390)
..|++.|+.+.+..+..+-..+. .+....+|+||||+|..-...- --|..++|.+|- +.|.+.+.+ ...++
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 35666666665544444332222 3455678999999998764432 236788999996 667666553 25576
Q ss_pred -EEECCCCC-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh
Q 016366 274 -HVGGNMFE-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348 (390)
Q Consensus 274 -~~~gd~~~-~-~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 348 (390)
|+.++.++ + ++++ |+|++..+|+-..++. +.|+++++.|+|||++++.|....+.. .+........+-...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhchhhh
Confidence 89999988 4 5665 9999999998776654 999999999999999999999876542 111112222222111
Q ss_pred hhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCcee
Q 016366 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY 384 (390)
Q Consensus 349 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 384 (390)
.. ..|-..|.+.|+. |+++-|+..+......+..
T Consensus 205 ~~-~dGC~ltrd~~e~-Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 205 LE-SDGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred ee-ccceEEehhHHHH-hhhcccccchhhcccCCce
Confidence 11 2676777777764 5778899988776664444
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=4.1e-12 Score=119.36 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=102.5
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEE
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAI 289 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i 289 (390)
++..++ ...+.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.+ +++.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I 188 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI 188 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence 333333 334569999999999999999886 468899998 7777766542 368888889876 45444 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
++..++|+++++....++++++++|+|||+++++.....+.... . .+....++.++++++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~--------~--------~p~~~~~~~~el~~~~~-- 250 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC--------P--------MPFSFTFKEGELKDYYQ-- 250 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC--------C--------CCCCcccCHHHHHHHhC--
Confidence 99999999988888899999999999999988766543322100 0 01123457899999995
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
+|++++..
T Consensus 251 ~~~i~~~~ 258 (287)
T PRK12335 251 DWEIVKYN 258 (287)
T ss_pred CCEEEEEe
Confidence 49888764
No 57
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.37 E-value=8.6e-12 Score=114.21 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=104.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hH------HHhhCCC-CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH------VVQDAPS-YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~------~~~~a~~-~~rv~~~~gd~~~-~~p~~ 286 (390)
..+..+++.+ .+++|||||||+|.++..++++.+. .++++|- +. .+++... ..++.+....+++ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 4455666423 4689999999999999999999764 5888883 11 1222221 1233344334443 33233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|+|..||+|..++- ..|+.+++.|+|||.+++-+.+.+.+........ ...-.|-. --..+|...+..|
T Consensus 183 FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 9999999999999876 8899999999999999987777766432110000 00001110 1235799999999
Q ss_pred HHHCCCCeeEEEecC
Q 016366 366 AIAAGFKGINFASCV 380 (390)
Q Consensus 366 l~~aGf~~~~~~~~~ 380 (390)
++++||+.+++..+.
T Consensus 255 l~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 LERAGFKDVRCVDVS 269 (315)
T ss_pred HHHcCCceEEEecCc
Confidence 999999999987663
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.36 E-value=9e-12 Score=113.51 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=99.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C-CC-CC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S-VP-EG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~-~p-~~-D~i~~~~vl 295 (390)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45679999999999999988876 356888887 6677666542 357788888765 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhh-hhhhhhhhhhc--CCCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-SLLDVLLMTRD--GGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~--~~g~~~t~~e~~~ll~~aGf~ 372 (390)
++.++.. .+|+++.+.|+|||++++....... .. ...... ...-....... ......+.++|.++++++||+
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNL--KS-YLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHH--HHHHHHHHHcCCCcEEEEEecCCCh--HH-HHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9988765 8899999999999999887543111 00 000000 00000000000 013356889999999999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
+++...
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 987754
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.35 E-value=1.8e-11 Score=115.48 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCCCCCC-CcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPE-GDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~~~p~-~D~i~~~~ 293 (390)
+..+|||||||+|.++..++++ +.+++++|+ +.|++.++++ .++++..+|+.+. +. .|+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-CCCcCEEEEcC
Confidence 4579999999999999999986 467899998 7888877653 2468888887542 33 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC------CcccCHHHHHHHHH
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTELAI 367 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------g~~~t~~e~~~ll~ 367 (390)
++||++++....+++++.+ +.+|+. +|.. .+.. ........... .+++ ....+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~~l~~~g~-----~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYDILKRIGE-----LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHHHHHHHHh-----hcCCCCcCceeeeCCHHHHHHHHH
Confidence 9999998877788888876 455554 4422 1111 00000000000 0111 12347999999999
Q ss_pred HCCCCeeEEEecCCce
Q 016366 368 AAGFKGINFASCVCNL 383 (390)
Q Consensus 368 ~aGf~~~~~~~~~~~~ 383 (390)
++||++.+..-..+.+
T Consensus 289 ~AGf~v~~~~~~~~~~ 304 (315)
T PLN02585 289 KAGWKVARREMTATQF 304 (315)
T ss_pred HCCCEEEEEEEeecce
Confidence 9999988765554433
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=3.7e-11 Score=105.12 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=90.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++. ++++++.+|+.+ +.... |+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 478999999999999999999999999999998 7788777652 459999999987 33323 99998752
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.+ ...+++.+++.|+|||++++.+... ...++.++.++.|+++.+++
T Consensus 122 -~~--~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 -AS--LSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -cC--HHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 22 3478999999999999999864321 13335666677799988776
Q ss_pred ec
Q 016366 378 SC 379 (390)
Q Consensus 378 ~~ 379 (390)
..
T Consensus 169 ~~ 170 (187)
T PRK00107 169 EL 170 (187)
T ss_pred EE
Confidence 54
No 61
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.34 E-value=1.9e-12 Score=111.41 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=98.8
Q ss_pred HhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCCCCCCC--cEEEecc
Q 016366 221 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPEG--DAILMKW 293 (390)
Q Consensus 221 ~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~~~p~~--D~i~~~~ 293 (390)
.++ -....+++|+|||.|.++..|+.++. +.+++|+ +..++.|++ .++|+++++|+-+..|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 466 56678999999999999999999974 5677787 888888875 378999999998866765 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 294 ILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 294 vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
++|++.+ ++...+++++.++|+|||.+++.... + .... ..|.....+.+.++|.+. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d----------~~c~--------~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--D----------ANCR--------RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---H----------HHHH--------HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--C----------Cccc--------ccCcccchHHHHHHHHHH-hh
Confidence 9999986 67889999999999999999986652 1 0011 134445688889999886 66
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
.++...+.
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 66665553
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.33 E-value=3e-11 Score=116.45 Aligned_cols=108 Identities=22% Similarity=0.285 Sum_probs=86.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCCCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~~~p~- 285 (390)
-+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++++ .+++++.+|.++.++.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4566666 33446999999999999999999999999999998 6777777642 3689999999875543
Q ss_pred C-cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G-DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~-D~i~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. |+|+++-.+|. .++....++++.+++.|+|||.++++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3 99999866654 4556677999999999999999998753
No 63
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=1.4e-11 Score=107.62 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=72.4
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCC-CcEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE-GDAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~-~D~i~~~~vlh~~ 298 (390)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++++|+.+ +... .|+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999998 666665543 2579999999987 3223 39998876 5442
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..+++.+++.|+|||++++.
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEE
Confidence 36788999999999999875
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.32 E-value=6.3e-11 Score=106.02 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCC-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVP- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p- 284 (390)
....++||+|||.|..+..++++ ...++++|+ +.+++.+.+ ..+|+++++|+++ +..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 457899998 777776311 2468999999998 421
Q ss_pred -C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 -E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 -~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
. .|.|+-..++|+++.+...++++++.++|+|||++++.....+..... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999999999999999999999988776654331100 0 0123578999
Q ss_pred HHHHHHCCCCeeEEEe
Q 016366 363 TELAIAAGFKGINFAS 378 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~ 378 (390)
+++|.. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 999864 566665544
No 65
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=1.2e-11 Score=114.41 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=78.7
Q ss_pred CCcceEEEEcCCccHHHH--HHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC--CC-cEEEe
Q 016366 226 QNVERLVDVGGGFGVTLS--MITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP--EG-DAILM 291 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~--~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p--~~-D~i~~ 291 (390)
.++.+|+|||||.|.++. .+++.+|+.+++++|. +++++.|++. ++|+|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 477899999999884433 3335689999999998 7788777652 579999999987432 23 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. ++|+|..++..++|+++++.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976666799999999999999988743
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=7.7e-11 Score=112.80 Aligned_cols=108 Identities=17% Similarity=0.285 Sum_probs=85.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC-cEEE
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DAIL 290 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~-D~i~ 290 (390)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ -..+++.+|.+++.+.. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 444454 23346899999999999999999999999999998 7788877642 23567888887755544 9999
Q ss_pred eccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++-.+|+. ......++++++.+.|+|||.++|+...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999863 2345679999999999999999987654
No 67
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=108.31 Aligned_cols=146 Identities=20% Similarity=0.317 Sum_probs=108.0
Q ss_pred ceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-----CCCCC--cEEEecc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-----SVPEG--DAILMKW 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-----~~p~~--D~i~~~~ 293 (390)
.+||+||||.|...--+++.+|+ +++...|. |.+++..+++ .++..-.-|+.. +.+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999888 89999997 8888887764 345544455543 23334 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc---ccCHHHHHHHHHHCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR---ERTKKEYTELAIAAG 370 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~---~~t~~e~~~ll~~aG 370 (390)
+|...+.+.-..+++++++.|||||.|++-|....+-.... . .....++-...+.. +|. .++.+++++++.++|
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F-~~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-F-KKGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-c-cCCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 99999999999999999999999999999988755421100 0 01122333333322 332 468999999999999
Q ss_pred CCeeEEE
Q 016366 371 FKGINFA 377 (390)
Q Consensus 371 f~~~~~~ 377 (390)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9887653
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.29 E-value=2.1e-11 Score=110.39 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=99.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC--CC-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP--EG-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p--~~-D~i~~~~vl 295 (390)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .++++..+|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999888654 4788887 6777766542 258888888876 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh-hhcC-----CCcccCHHHHHHHHHHC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-TRDG-----GGRERTKKEYTELAIAA 369 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-----~g~~~t~~e~~~ll~~a 369 (390)
|+.++.. .+|+++++.|+|||.+++.+...+.. .. ........+. ...+ .....+..++.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SY---LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HH---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9998776 89999999999999998876532110 00 0000000000 0000 12345789999999999
Q ss_pred CCCeeEEEec
Q 016366 370 GFKGINFASC 379 (390)
Q Consensus 370 Gf~~~~~~~~ 379 (390)
||+++++...
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999887643
No 69
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.27 E-value=1.4e-11 Score=107.86 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=96.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----CCC-ceEEECCCCCCCCC--C-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFESVPE--G-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~r-v~~~~gd~~~~~p~--~-D~i~~~~vlh 296 (390)
...+.||.|+|.|+.+..++...- -++-.+|. +..++.|++ .++ .++.+..+.+-.|. . |+||+.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998876442 23444554 677777763 234 45666655553332 2 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
|++|++..++|++|+++|+|+|.|+|-|++...... .+| ...+.-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999999999999998765310 111 113567799999999999999999987
Q ss_pred EecC
Q 016366 377 ASCV 380 (390)
Q Consensus 377 ~~~~ 380 (390)
..-.
T Consensus 200 ~~Q~ 203 (218)
T PF05891_consen 200 EKQK 203 (218)
T ss_dssp EE-T
T ss_pred cccc
Confidence 5543
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=1.7e-10 Score=102.04 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=94.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC---CCCCC--cEEEeccccccCCh
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d 300 (390)
+..+|||||||+|.++..+++.. ...++++|+ +++++.+++ .+++++.+|+.+ +++.. |+|++.+++||+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 55799999999999998887653 567788898 778877764 468899999865 24332 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh---------hhhcCCCcccCHHHHHHHHHHCCC
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL---------MTRDGGGRERTKKEYTELAIAAGF 371 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~g~~~t~~e~~~ll~~aGf 371 (390)
.. ++|+++.+.+++ +++.-+.... +.........-.+ +...+..+.++.+++.++++++||
T Consensus 91 ~~--~~l~e~~r~~~~---~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 91 PE--EILDEMLRVGRH---AIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred HH--HHHHHHHHhCCe---EEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 65 789998887653 3332211100 0000000000000 000012346789999999999999
Q ss_pred CeeEEEecC
Q 016366 372 KGINFASCV 380 (390)
Q Consensus 372 ~~~~~~~~~ 380 (390)
++++.....
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 999877664
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.24 E-value=7.7e-11 Score=96.00 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=78.1
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC---CCCC-
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~---~p~~- 286 (390)
+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444454 45567999999999999999999999999999998 777776654 25789999987641 2233
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+|++....+. ..++++++++.|+|||++++.
T Consensus 90 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 99998765432 348999999999999998874
No 72
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.23 E-value=5e-11 Score=103.81 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=94.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----CCCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ .-.+.++||+|||.|+.+..++++. ..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555566 4567899999999999999999985 56777776 445554332 2348889999988 66665 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++++++.+...++++++.+.++|||++++...+..++. +. ... ....+.+.|+++.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p~-------~~~--------~~f~~~~~EL~~~y-- 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-PC-------PSP--------FPFLLKPGELREYY-- 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHT--
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-CC-------CCC--------CCcccCHHHHHHHh--
Confidence 9999999999999999999999999999999888766532211 10 000 12234577888888
Q ss_pred CCCCeeEE
Q 016366 369 AGFKGINF 376 (390)
Q Consensus 369 aGf~~~~~ 376 (390)
+||.+++.
T Consensus 160 ~dW~il~y 167 (192)
T PF03848_consen 160 ADWEILKY 167 (192)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 47888764
No 73
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.23 E-value=1.5e-10 Score=99.58 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=101.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC---CCCC--cEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES---VPEG--DAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~---~p~~--D~i~~~~vlh~~~ 299 (390)
+++.||||+|||.|.++..+.+. .++++.++++ ++.+..+.+ ..+.++++|+.+. +|+. |.|+++.+|.+..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888875 5888888887 554444443 3588999999873 5554 9999999999998
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh---------hhhhcCCCcccCHHHHHHHHHHCC
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL---------LMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
.++ ++|+++.|+ |...+|.-+-+.. +..+....+.-. .+..+|+=+..|..+++++.++.|
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~-----W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGH-----WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHH-----HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 876 889998776 4455553332211 111111110000 122235566779999999999999
Q ss_pred CCeeEEEecCCc
Q 016366 371 FKGINFASCVCN 382 (390)
Q Consensus 371 f~~~~~~~~~~~ 382 (390)
+++++...+.+.
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999998887643
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.23 E-value=1.5e-10 Score=106.46 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=97.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC--c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~--D 287 (390)
.+++.++ ....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|++++++.. |
T Consensus 79 ~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 79 AALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD 156 (251)
T ss_pred HHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence 3444443 3446899999999999999999999999999998 7788777642 46999999998865543 9
Q ss_pred EEEecccccc------CChhH------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 288 AILMKWILHC------WDDDH------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 288 ~i~~~~vlh~------~~d~~------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
+|+++-.++. +.... ...+++++.+.|+|||++++....
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----------------- 219 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----------------- 219 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------
Confidence 9998543332 22111 237899999999999998873210
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+++.++++++||+.+++....
T Consensus 220 -------------~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 -------------DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -------------cHHHHHHHHHHhCCCCceEEEeCC
Confidence 124667889999999988876544
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.22 E-value=5.7e-11 Score=102.81 Aligned_cols=99 Identities=23% Similarity=0.393 Sum_probs=80.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
...+|||+|||+|..+..+++++|+.+++.+|+ +.+++.++++ ++++++..|.++..+. . |+|+++=-+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999988999998 7788877652 3389999999986663 3 99999988876
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 298 WDD---DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 298 ~~d---~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
-.+ .-..++++.+.+.|+|||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 654 3467899999999999999976444
No 76
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=7.2e-11 Score=101.08 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=85.9
Q ss_pred EEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 255 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+++|. +.|++.|+++ .+|+++++|+.+ +++.. |+|++..++|+++|.. ++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCeEEE
Confidence 36777 8898887532 369999999988 77664 9999999999998765 89999999999999999
Q ss_pred EEecccCCCCCcchHHhhhhh-hhhhhhhhcCC-----------CcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 322 VMNSIVPEIPEVSSAARETSL-LDVLLMTRDGG-----------GRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 322 i~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~-----------g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
|.|...++............. .-......... ...++.+++.++|+++||+.++......
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 999876542111000000000 00000000000 1345899999999999999998877763
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=4.5e-10 Score=100.89 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=98.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCCCCC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVP-- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~~~p-- 284 (390)
.+..+|||+|||.|..+..++++ +.+++++|+ +..++.+.+ ..+|++.++|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 567899998 666665421 2468999999998322
Q ss_pred -CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 -EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.. |+|+-..++|+++.+...++++++.++|+|||.++++....++.... . -....+.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHHH
Confidence 12 99999999999999999999999999999999866665554332100 0 0113579999
Q ss_pred HHHHHHCCCCeeEEEec
Q 016366 363 TELAIAAGFKGINFASC 379 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~ 379 (390)
++++.. +|.+..+...
T Consensus 176 ~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 176 EALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHhcC-CceEEEeeec
Confidence 999953 3777665543
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=3.5e-11 Score=107.11 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=80.8
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCC-CC-C--CCCC
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNM-FE-S--VPEG 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~-~~-~--~p~~ 286 (390)
+.+.+. .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++++|+ .. + ++.+
T Consensus 33 ~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 33 WAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred HHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 344444 2567999999999999999999999999999998 778887764 26799999999 43 3 4443
Q ss_pred --cEEEeccccccCCh------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 --DAILMKWILHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 --D~i~~~~vlh~~~d------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++.....+... .....+|+++++.|+|||.+++...
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99988765432221 1135789999999999999998643
No 79
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=9.4e-10 Score=101.59 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=92.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCCC-----CC-CcEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFESV-----PE-GDAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~~-----p~-~D~i~~~ 292 (390)
+.+..+|||+|||+|.++..++... +.-+++.+|+ +. +++.++.+++|.++.+|+..+. .. .|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999976 4557888887 43 6677776789999999987532 22 3999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. .+| +...++.++++.|||||+++|.-.....+..+ ....+-.+|. ++|+++||+
T Consensus 210 va---~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 64 233 34466778999999999999842211111000 0000001334 889999999
Q ss_pred eeEEEecC
Q 016366 373 GINFASCV 380 (390)
Q Consensus 373 ~~~~~~~~ 380 (390)
+++...++
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99988876
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.18 E-value=9.4e-10 Score=96.53 Aligned_cols=134 Identities=22% Similarity=0.316 Sum_probs=95.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CC-ceEEECCCCCCCCC-C-cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFESVPE-G-DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~r-v~~~~gd~~~~~p~-~-D~i~~~~v 294 (390)
.+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++. ++ +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999988 577888888 7787777542 22 88999999886554 3 99998765
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc
Q 016366 295 LHCWD-------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 355 (390)
Q Consensus 295 lh~~~-------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 355 (390)
+.... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43311 1224578999999999999988753211
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecC---CceeEEEEeC
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCV---CNLYIMEFFK 390 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~k 390 (390)
...+++.++++++||++..+.... ....+++.+|
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 124567889999999988765443 2333444443
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=9.3e-10 Score=102.79 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=97.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vl 295 (390)
..+..+|||+|||+|.++..++...|+.+++++|+ +.+++.++++ .+++++.+|++++.+. . |+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777776642 5799999999886553 3 999885322
Q ss_pred cc------CCh------------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 296 HC------WDD------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 296 h~------~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
.. ..+ +...++++++.+.|+|||++++. . ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~--g~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I--GY---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E--Cc----------------------
Confidence 11 111 12357899999999999998871 1 00
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeEEE-ecCCceeEEEEe
Q 016366 352 GGGRERTKKEYTELAIAAGFKGINFA-SCVCNLYIMEFF 389 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~vi~~~ 389 (390)
...+++++++++.||+.+++. ...+...++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 013458889999999876664 334555565554
No 82
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.16 E-value=1.7e-09 Score=98.24 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=111.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCC------CCCc-eEEECCCCCC--C----CCCcEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS------YAGV-EHVGGNMFES--V----PEGDAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~------~~rv-~~~~gd~~~~--~----p~~D~i 289 (390)
..+.+||||.||+|.+....+..+|. .++...|. +..++..++ ...+ +|.++|.++. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888887 666666554 2444 9999999983 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCC-----cccCHHHHH
Q 016366 290 LMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG-----RERTKKEYT 363 (390)
Q Consensus 290 ~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g-----~~~t~~e~~ 363 (390)
+.+.++..|+|.+ +...|+.+++++.|||+++....-..+. . ..+......+ .+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----l----e~IAr~LtsH-r~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----L----EMIARVLTSH-RDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----h----HHHHHHHhcc-cCCCceEEEecCHHHHH
Confidence 9999999999977 5557999999999999987644222111 1 0111111111 122 468999999
Q ss_pred HHHHHCCCCeeEEEec-CCceeEEEEeC
Q 016366 364 ELAIAAGFKGINFASC-VCNLYIMEFFK 390 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~-~~~~~vi~~~k 390 (390)
+++++|||+-++..-- -+-+.|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999986654332 36666766654
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.15 E-value=9.6e-11 Score=103.65 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=76.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C---CCCC--cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S---VPEG--DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~---~p~~--D~i~~~~ 293 (390)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999998 778777654 2589999999975 2 4443 8887765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 294 ILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..++..... ...+++.++++|+|||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 443222110 14689999999999999988653
No 84
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=7.5e-10 Score=98.97 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=79.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCCC---------CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~---------~p~ 285 (390)
.++.+.+..+.+..+|||||||+|.++..++++. +..+++++|+..+. ..++++++++|+.++ ++.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555534667899999999999999999986 45689999985532 236799999999873 333
Q ss_pred C--cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G--DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++....+...+.. ...+|+.+++.|+|||.+++....
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2 9999977666544321 246899999999999999986543
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=9.4e-10 Score=94.11 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=81.8
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC---CCCCcE
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VPEGDA 288 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~---~p~~D~ 288 (390)
+..+. +.+..+++|||||+|+.+.+++...|..+++.+|. +++++..++ .++++++.||.-+- .+..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45555 67889999999999999999999999999999997 667666554 38999999998763 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+....- . ...+|+.+...|+|||++++.-..
T Consensus 106 iFIGGg~-~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG-N-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC-C-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 9988862 2 348999999999999998874443
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=2.4e-10 Score=106.64 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCC---eEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~---~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
...+|||||||+|.++..+++..|.. .++++|+ +.+++.|++. +++++..+|..+ |++.+ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999887753 6799998 8888888754 789999999988 77654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ ..+++++++|+|||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2468899999999999987643
No 87
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.6e-09 Score=98.24 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=87.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D 287 (390)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++-++++ .+..+...|.+++...- |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 35677777 44455999999999999999999999999999998 6677777763 23367788888866654 9
Q ss_pred EEEeccccccCC---hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 288 AILMKWILHCWD---DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 288 ~i~~~~vlh~~~---d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.|+++=-+|.-- ..-..++++..++.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999998632 33355899999999999999998766
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=6e-10 Score=99.43 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~- 285 (390)
..+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|+.+.++.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34555555 55678999999999999999998764 557899998 7787776642 3589999999874432
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. |+|++...+++++ +++.+.|+|||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 2 9999999887665 3567899999999874
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.09 E-value=1.6e-09 Score=101.44 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=75.6
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecc---
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW--- 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~--- 293 (390)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ ++|+++.+|++++++. . |+|+++=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999998 7888877752 4799999999876654 3 9999851
Q ss_pred ---c-------cccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 294 ---I-------LHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 294 ---v-------lh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
. +++-|. ....++++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 121111 1236789999999999998775
No 90
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.09 E-value=1.4e-09 Score=100.05 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---C----CceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A----GVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~----rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++ . ++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4568999999999999988776544 36888888 7888877753 2 233333321 24999876432
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+....+++++.+.|+|||++++...... ..+++.+.+++.||++.+..
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 3345789999999999999998654311 24567889999999998887
Q ss_pred ecCCceeEE
Q 016366 378 SCVCNLYIM 386 (390)
Q Consensus 378 ~~~~~~~vi 386 (390)
....-.+++
T Consensus 238 ~~~~W~~~~ 246 (250)
T PRK00517 238 ERGEWVALV 246 (250)
T ss_pred EeCCEEEEE
Confidence 765544443
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.06 E-value=9.4e-10 Score=105.69 Aligned_cols=108 Identities=12% Similarity=0.251 Sum_probs=80.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC---CCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~---~~p~~ 286 (390)
.+++.+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+ .++|.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3455554 33456899999999999999999999999999998 666665543 3689999999853 45554
Q ss_pred --cEEEeccccccCChhH-----HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHCWDDDH-----CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|.|++.+... |+... ...+|+.++++|+|||.+.+.+-.
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 9988765432 22111 147899999999999999885543
No 92
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.06 E-value=4.5e-09 Score=101.68 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=94.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCC-C-C-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-E-G-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p-~-~-D~i~~~~vlh 296 (390)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ .+++++++|+++ ..+ . . |+|+++=-..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888887753 479999999987 343 2 3 9999864321
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 297 CWDD-----------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 297 ~~~d-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
.-.+ +-.+++++.+.+.|+|||.+++ |.-.+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECcc-------------------------
Confidence 1100 1134677788889999998664 22110
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEe
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFF 389 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 389 (390)
..+.+.+++++.||+.+++...- +...++.++
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 14567888899999887775543 545555443
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1.4e-09 Score=97.50 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~-p~~ 286 (390)
..+++.+. ..+..+|||||||+|.++..+++.. ++.+++++|. +.+++.++++ .+++++.+|..+.. +.+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 45556665 6778899999999999999988875 4568899998 8888877652 57999999998733 333
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+|++....+..+ ..+.+.|+|||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999887765443 3556789999998885
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.05 E-value=2.6e-09 Score=94.82 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=74.6
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CCC-C
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G 286 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p~-~ 286 (390)
..++ ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++ ++++++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4444 6677899999999999999998764 6678999998 7788866532 5789999998762 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|+|++... ......+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99987542 22345889999999999999886
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.03 E-value=3e-09 Score=97.20 Aligned_cols=125 Identities=13% Similarity=0.153 Sum_probs=93.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~ 302 (390)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+++ ..+.. |+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346899999999999999999887789999998 8899888764 689999999988 33333 9999998888765432
Q ss_pred ------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 303 ------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 303 ------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
..++++.....|+|+|.+++. .+..+ .+ ....+.++|++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~y----------~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------YY----------DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------cc----------cccCCHHHHHH
Confidence 135667778888888876665 22210 00 11236899999
Q ss_pred HHHHCCCCee
Q 016366 365 LAIAAGFKGI 374 (390)
Q Consensus 365 ll~~aGf~~~ 374 (390)
+++++||...
T Consensus 201 ~l~~~g~~~~ 210 (279)
T PHA03411 201 WSKQTGLVTY 210 (279)
T ss_pred HHHhcCcEec
Confidence 9999999653
No 96
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.03 E-value=6.8e-09 Score=90.22 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=95.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCC
Q 016366 201 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 280 (390)
Q Consensus 201 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~ 280 (390)
..|.+.+..+.......+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-+. +-.++..|+.
T Consensus 46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------n~~Vtacdia 114 (219)
T PF05148_consen 46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------NPRVTACDIA 114 (219)
T ss_dssp HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------STTEEES-TT
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------CCCEEEecCc
Confidence 34555566666666777887776444567999999999999966542 346788886321 1235678987
Q ss_pred C-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCccc
Q 016366 281 E-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 357 (390)
Q Consensus 281 ~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 357 (390)
. |++.. |+++++-.|..- +...+|+++.|.|||||.|.|.|.... .-
T Consensus 115 ~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SR---------------------------f~ 164 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSR---------------------------FE 164 (219)
T ss_dssp S-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S
T ss_pred cCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEeccc---------------------------Cc
Confidence 7 88875 999888777542 245899999999999999999887521 11
Q ss_pred CHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 358 TKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.+++.+.+++.||+..........+.+.+.+|
T Consensus 165 ~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 165 NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 467788899999999988766667777777654
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.02 E-value=2.8e-09 Score=100.02 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=75.7
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEec------
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK------ 292 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~------ 292 (390)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7788777752 3599999999887664 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 293 -------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 293 -------~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
.++++-|. ....++++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1456899999999999998764
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.02 E-value=2.5e-09 Score=96.20 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=75.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~ 285 (390)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999999864 467888887 8888877652 579999999987333 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.|+|++.....+. ...+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999987765443 44567899999998874
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=4.6e-09 Score=94.61 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C--CCCC-
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG- 286 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~~- 286 (390)
+..+.......+|||+|||+|..+..++++.++++++++++ +.+.+.|++. +||+++++|+.+ . .+..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333245588999999999999999999999999999998 7788877763 789999999976 2 2222
Q ss_pred -cEEEeccccccCChh----------------HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh
Q 016366 287 -DAILMKWILHCWDDD----------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 349 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 349 (390)
|+|+|+=-++.-.+. ...++++.+.+.|||||.+.++-...
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------- 173 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------- 173 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------
Confidence 999998666543322 15678999999999999998854420
Q ss_pred hcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 350 RDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 350 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...++.+++.+.+|...++..+
T Consensus 174 --------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --------HHHHHHHHHHhcCCCceEEEEe
Confidence 1445677778878877766555
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=99.01 E-value=9.1e-09 Score=93.10 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=74.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-C-cEEEeccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMKWILH 296 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~-D~i~~~~vlh 296 (390)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ .+++++.+|+.+.++. . |+|+++--++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4556799999999999999988763 347888998 7777766542 3578899999775543 3 9999874333
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 297 CWDD-------------------DHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 297 ~~~d-------------------~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..++ .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 113568899999999999999865543
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=2.8e-09 Score=94.45 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CCC-C
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-G 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p~-~ 286 (390)
+++.++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.++++ ++++++.+|+.+. +.. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455554 56778999999999999999998888899999998 8888877642 5799999998652 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.+++.. . ....++++++++.|+|||++++...
T Consensus 111 d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654422 1 2245889999999999999998764
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=3.5e-09 Score=100.15 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=75.1
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecc-----
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW----- 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~----- 293 (390)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++|+++++|+++.++. . |+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888877652 4699999999876654 3 9999861
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 016366 294 --------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 294 --------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 322 (390)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999999876
No 103
>PRK04457 spermidine synthase; Provisional
Probab=98.95 E-value=3.1e-09 Score=98.26 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCCC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPEG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~~-D~i~~~~ 293 (390)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++. ++++++.+|+.+ ..+.. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 8899887752 679999999865 23333 9998753
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHC--WDDD-HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~--~~d~-~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++. .+.. ....+++++++.|+|||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 1211 1258999999999999998874
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=1e-08 Score=96.26 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~ 297 (390)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .++.+..++.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887765 4457888898 7788877753 34666666643322333 999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+....++.++++.|+|||+++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 23458899999999999999987654
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.94 E-value=1.3e-08 Score=102.67 Aligned_cols=130 Identities=15% Similarity=0.225 Sum_probs=93.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEeccc---
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWI--- 294 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~v--- 294 (390)
..+|||+|||+|.++..++.++|+.+++++|+ +.+++.++++ ++++++.+|+++.++. . |+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 7788877752 4799999999875554 3 99998421
Q ss_pred -----------cccCCh----------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 295 -----------LHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 295 -----------lh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
..+-|. +...++++++.+.|+|||.+++ +.-. +
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-~------------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-K------------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-c------------------------
Confidence 111111 1245678899999999999875 3210 0
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEec-CCceeEEE
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASC-VCNLYIME 387 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~ 387 (390)
..+.+.+++++.||+.+++..- .+...++.
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 1445677888889987776544 34444443
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=7.7e-09 Score=80.28 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=74.2
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC------CCCCceEEECCCCCCC---CCC-cEEEeccccccC
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFESV---PEG-DAILMKWILHCW 298 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~------~~~rv~~~~gd~~~~~---p~~-D~i~~~~vlh~~ 298 (390)
+++|+|||.|.++..+++ .+..+++++|+ +..++.++ ...+++++.+|+.+.. +.. |+|++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 66788999997 55555444 1367899999998832 233 999999999885
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+....+++++.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 445669999999999999998875
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=9e-09 Score=90.59 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=74.7
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCC-C--------CCC-C
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPE-G 286 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------~p~-~ 286 (390)
+.+.+....++.+|||+|||+|.++..+++++ +..+++++|+..+. ..++++++++|+.+ + .+. .
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 44445445678899999999999999999887 56789999984432 34678999999876 2 233 3
Q ss_pred -cEEEeccccc---cCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILH---CWD------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh---~~~------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++....| .|. .+...++|+++++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999854322 111 1123589999999999999999853
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.92 E-value=2.2e-08 Score=96.02 Aligned_cols=127 Identities=15% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-- 286 (390)
.++.... ++++.+|||+|||+|.++.+.+.. ..+++++|+ +.+++.++.+ +++++..+|+.+ +.+..
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3343333 567789999999999999887654 567888888 7787766542 448899999988 66543
Q ss_pred cEEEecccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 287 DAILMKWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 287 D~i~~~~vlh~-------~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
|+|++.--+.. ...+...++|+.+++.|+|||++++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-------------------------------- 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-------------------------------- 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------
Confidence 99998632211 112335689999999999999998754321
Q ss_pred HHHHHHHHHCCCCeeEEEec
Q 016366 360 KEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+|.++++++|| ++..+..
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 124567888999 7776665
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.91 E-value=1.6e-09 Score=87.48 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=75.2
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-C--CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-S--VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~--~p~~--D~i~~~~vl 295 (390)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++++|+.+ . .+.. |+|+++-.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 788888888 777777664 2679999999987 3 4443 999998777
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWD------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+... .+....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 1234688999999999999998864
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.89 E-value=4.2e-08 Score=90.20 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=73.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCCCCC----CC-cEEEeccccc-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVP----EG-DAILMKWILH- 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~~p----~~-D~i~~~~vlh- 296 (390)
...++||+|||+|.++..+++..|..+++++|+ +.+++.++++ .+++++++|+++.++ .. |+|+++=-..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999889999998 8888887753 347899999987443 23 9998874321
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCcEEEEE
Q 016366 297 -----CWDDD------------------HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 297 -----~~~d~------------------~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..+++ -..++++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 1347888899999999998864
No 111
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.88 E-value=5e-08 Score=86.73 Aligned_cols=156 Identities=16% Similarity=0.179 Sum_probs=106.3
Q ss_pred hcccCchHHHHHHHHHhhccH----HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCC
Q 016366 192 YASGNPRFNETYHEAMFNHST----IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP 267 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~m~~~~~----~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~ 267 (390)
....+|+....|.+....... ..+..+++.+..-+....|.|+|||.+.++. . ..-.+..+|+-.
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a------ 209 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA------ 209 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c--cccceeeeeeec------
Confidence 344677777777666544333 3455666666534566789999999998876 1 123467777632
Q ss_pred CCCCceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh
Q 016366 268 SYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD 344 (390)
Q Consensus 268 ~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d 344 (390)
.+-+++..|+.+ |+++. |+++++-.|.. . +...++++++|.|+|||.+.|.|...
T Consensus 210 --~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t--n~~df~kEa~RiLk~gG~l~IAEv~S----------------- 267 (325)
T KOG3045|consen 210 --VNERVIACDMRNVPLEDESVDVAVFCLSLMG-T--NLADFIKEANRILKPGGLLYIAEVKS----------------- 267 (325)
T ss_pred --CCCceeeccccCCcCccCcccEEEeeHhhhc-c--cHHHHHHHHHHHhccCceEEEEehhh-----------------
Confidence 233566788888 77764 99888776643 2 35589999999999999999987641
Q ss_pred hhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 345 VLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 345 ~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+..+...+.+.|.+.||.+........++.+.+..|
T Consensus 268 ----------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ----------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 111344478888999999877766666766666543
No 112
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.87 E-value=4e-09 Score=92.10 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=107.2
Q ss_pred HHHHHHHHhhccHHH----HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCce-
Q 016366 200 NETYHEAMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE- 273 (390)
Q Consensus 200 ~~~~~~~m~~~~~~~----~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~- 273 (390)
...|.......-.+. ..+.+...+ ..+..++||+|||||.+...+...-.+ .+++|+ ..|++.|.+.+-..
T Consensus 95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eKg~YD~ 171 (287)
T COG4976 95 AERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEKGLYDT 171 (287)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhccchHH
Confidence 445555544322222 233444444 445889999999999999998877554 467777 88999998753221
Q ss_pred EEECC---CCCCCC-C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh
Q 016366 274 HVGGN---MFESVP-E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 348 (390)
Q Consensus 274 ~~~gd---~~~~~p-~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 348 (390)
+.++| |..+.. + .|+|+...||-++.+-+ .++.-+...|+|||.+.++-...+++..- .....
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f-------~l~ps--- 239 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGF-------VLGPS--- 239 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCe-------ecchh---
Confidence 11221 332222 2 39999999999998766 88999999999999999977766553110 00000
Q ss_pred hhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 349 TRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 349 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....+..-++.+++..||+++++.++.
T Consensus 240 ----~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 240 ----QRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred ----hhhccchHHHHHHHHhcCceEEEeeccc
Confidence 0112346667899999999999987764
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=4e-08 Score=88.09 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=82.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p~ 285 (390)
.+..+||+.|||.|.-+..|++.. .+++++|+ +..++.+.+ ..+|++.++|+++ +.+.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 455799999999999999999874 46888898 666666421 2479999999998 4221
Q ss_pred ----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 ----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 ----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. |+|+=..+|+.++++...+..+++.+.|+|||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2 99999999999999999999999999999999999887643
No 114
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=2.1e-08 Score=89.99 Aligned_cols=131 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------------CCCceEEECCCCC-CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~rv~~~~gd~~~-~~p 284 (390)
.....+||..|||.|.-+..|+++. .+++++|+ +..++.+.+ ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4567899999999999999999874 57899998 667766511 1468999999998 332
Q ss_pred C--C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc--ccCH
Q 016366 285 E--G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR--ERTK 359 (390)
Q Consensus 285 ~--~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~--~~t~ 359 (390)
. . |+|+=...|+.++++...+..+++.+.|+|||.++++....+.... .|. ..+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence 2 2 9999999999999999999999999999999996665554433210 111 2368
Q ss_pred HHHHHHHHHCCCCeeEEEe
Q 016366 360 KEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~ 378 (390)
+++++++. .+|++..+..
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 99999998 7898877654
No 115
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.83 E-value=1.3e-08 Score=89.53 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=69.3
Q ss_pred CcceEEEEcCCccH--HHHH--HHhh----CC-CCeEEEecc-hHHHhhCCCC---------------------------
Q 016366 227 NVERLVDVGGGFGV--TLSM--ITSK----YP-QIKAVNFDL-PHVVQDAPSY--------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~Dl-~~~~~~a~~~--------------------------- 269 (390)
+..+|...||++|. ++.+ +.+. .+ ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999993 3333 3331 12 467888888 8888887750
Q ss_pred -------CCceEEECCCCC-CCCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 -------AGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 -------~rv~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|...|..+ +.+. . |+|+|.|||-+++++...+++++++++|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 469999999998 3333 3 99999999999999999999999999999999999844
No 116
>PRK00811 spermidine synthase; Provisional
Probab=98.83 E-value=1.3e-08 Score=95.34 Aligned_cols=98 Identities=23% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC--CC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--PE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~--p~-~-D~i 289 (390)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655567888888 888887765 268999999987622 22 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433322221 257899999999999998863
No 117
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.83 E-value=4.8e-08 Score=87.85 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=95.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~ 305 (390)
...++||||+|.|..+..++..+.++.+|... +.|..+.+++ +++++..|-...-+.. |+|.|.|+|-...++. .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~--~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL--T 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCCHH--H
Confidence 45789999999999999999999887777666 7787776653 3555544333322323 9999999998888776 8
Q ss_pred HHHHHHHhCCCCcEEEEEecccCCCCCcch----HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 306 ILKNCYKAVPGNGKVIVMNSIVPEIPEVSS----AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 306 ~L~~~~~~L~pgG~lli~e~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+|+.++++|+|+|++++.--. |-.+-... ..+....+++ .+...+-....+.+.|+.+||++++....|
T Consensus 170 LL~~i~~~l~p~G~lilAvVl-P~~pyVE~~~g~~~~P~e~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVL-PFRPYVEFGGGKSNRPSELLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEe-cccccEEcCCCCCCCchhhcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 999999999999998864322 21110000 0000011111 111111123444588999999999998876
No 118
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.82 E-value=3.2e-08 Score=88.79 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=73.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE---G 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~---~ 286 (390)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+.++. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444455 56778999999999999987777653 6777776 7777766642 4699999998774442 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998766544 3456789999999887543
No 119
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.82 E-value=1.7e-08 Score=85.19 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=88.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CC-CceEEECCCCCC-CC-CC-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YA-GVEHVGGNMFES-VP-EG-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-rv~~~~gd~~~~-~p-~~-D~i~~~~vl 295 (390)
...+|||+|||+|.++..|++..-.-..+++|- +..++.|+. .+ .|+|.+.|+.+| +- .. |+|+=..++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 344999999999999999999653334566664 666655443 23 499999999984 33 33 887655554
Q ss_pred ccC------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 296 HCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 296 h~~------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
... ++......+..+.+.|+|||+++|.. + -+|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-C-----------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-C-----------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-c-----------------------------CccHHHHHHHHhcC
Confidence 332 23333467889999999999988721 1 13688899999999
Q ss_pred CCCeeEEEecC
Q 016366 370 GFKGINFASCV 380 (390)
Q Consensus 370 Gf~~~~~~~~~ 380 (390)
||......|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99988877776
No 120
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.82 E-value=4e-08 Score=89.33 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=87.2
Q ss_pred HHHHHhhccCCcceEEEEcCCcc--HHHHHHHh-hCCCCeEEEecc-hHHHhhCCC----CCC--ceEEECCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFG--VTLSMITS-KYPQIKAVNFDL-PHVVQDAPS----YAG--VEHVGGNMFES---V 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G--~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~----~~r--v~~~~gd~~~~---~ 283 (390)
..+..+-.-.+...+||||||-= ...-++++ ..|+.+++.+|. |-++.+++. .++ ..++.+|+.++ +
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 33444431226789999999933 34445554 679999999998 888888875 245 88999999873 2
Q ss_pred C--C--C-------cEEEeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 284 P--E--G-------DAILMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 284 p--~--~-------D~i~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
. . + =.+++..+||+.+| ++...+++.++++|.||++|+|+..+.+..+ ..... ....... ..
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~~~---~~~~~~~-~~ 211 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERAEA---LEAVYAQ-AG 211 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHHHH---HHHHHHH-CC
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHHHH---HHHHHHc-CC
Confidence 2 1 1 37899999999987 7788999999999999999999888754432 11111 1111111 12
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeE
Q 016366 352 GGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.....||.+|+.++|. ||.+++
T Consensus 212 ~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 212 SPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp S----B-HHHHHHCCT--TSEE-T
T ss_pred CCceecCHHHHHHHcC--CCccCC
Confidence 2567899999999995 888764
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.2e-07 Score=86.62 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=90.5
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-cEEEec--ccccc--
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMK--WILHC-- 297 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D~i~~~--~vlh~-- 297 (390)
+|||+|||+|..+..++.++|+.+++++|+ +.+++.|+++ .++.++.+|.+++++.. |+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 8888877753 45667777988876655 999876 22111
Q ss_pred -C-C-----------------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccC
Q 016366 298 -W-D-----------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 358 (390)
Q Consensus 298 -~-~-----------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t 358 (390)
. + -+...+++..+.+.|+|||.+++ +.-.. .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~-----------------------------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT-----------------------------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC-----------------------------c
Confidence 0 0 11356788889999999887665 22110 1
Q ss_pred HHHHHHHHHHCC-CCeeEEEecC-CceeEE
Q 016366 359 KKEYTELAIAAG-FKGINFASCV-CNLYIM 386 (390)
Q Consensus 359 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vi 386 (390)
.+.+.+++.+.| |..+...... +...++
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~ 272 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVV 272 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEE
Confidence 566788999999 6655555444 333333
No 122
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1e-07 Score=85.28 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=86.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHh-hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC-CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~-~p 284 (390)
+..|+.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++ ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345666666 88999999999999999999997 668789999997 7777777763 5699999999883 44
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 285 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.. |+|++ ++|+++ .+|.++.++|+|||.+++..++.+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44 88765 678888 889999999999999999877753
No 123
>PRK01581 speE spermidine synthase; Validated
Probab=98.74 E-value=3.9e-08 Score=93.40 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------------CCCceEEECCCCCCC---CCC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESV---PEG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------------~~rv~~~~gd~~~~~---p~~-D 287 (390)
.++.+||+||||.|..+.++++..+..+++.+|+ +.|++.|++ .+|++++.+|..+-+ +.. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999987655567888888 888888874 268999999998622 222 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 288 AILMKWILH---CWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 288 ~i~~~~vlh---~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|++...-. .........+++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999874211 111222357899999999999998775
No 124
>PLN02366 spermidine synthase
Probab=98.73 E-value=6.8e-08 Score=91.04 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCC---CCCC--CcEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE--GDAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~---~~p~--~D~i 289 (390)
+++.+||+||||.|..+.++++..+..+++.+|+ +.+++.++++ +|++++.+|..+ ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986533356788887 7788877652 589999999854 2333 3999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+.. -...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 886543332221 1357899999999999998753
No 125
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=5.4e-08 Score=85.79 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=91.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------C----------------------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------A---------------------- 270 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~---------------------- 270 (390)
+-.+..+|||||.+|.++..+++.+....++++|+ +..++.|++. .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678899999999999999999998888999998 7777777752 0
Q ss_pred --------CceE-------EECCCCC-CCCCCcEEEeccccc----cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 271 --------GVEH-------VGGNMFE-SVPEGDAILMKWILH----CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 271 --------rv~~-------~~gd~~~-~~p~~D~i~~~~vlh----~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
++.| ...||.+ ..+..|+|+|-++-- +|.|+-..++|+++++.|.|||+|+ +|+..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCc---
Confidence 1112 2223332 233348997765532 4678899999999999999999866 45431
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC--CCCee
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA--GFKGI 374 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~ 374 (390)
..... ........ +....-.-...++.+..++.+. ||+-+
T Consensus 212 -WksY~-kaar~~e~--~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 -WKSYK-KAARRSEK--LAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -hHHHH-HHHHHHHH--hhcCccceecCHHHHHhhhhhhhhheeee
Confidence 11110 11111111 1111122345688899999887 55443
No 126
>PRK03612 spermidine synthase; Provisional
Probab=98.71 E-value=1.1e-07 Score=96.49 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-------------CCceEEECCCCCC---CCCC-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-------------~rv~~~~gd~~~~---~p~~- 286 (390)
+++.+|||||||+|..+.++++ +|. .+++.+|+ +++++.++++ +|++++.+|.++. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999987 455 68888888 8899988761 6899999998762 2333
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 DAILMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 D~i~~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++...-...+.. -..++++++++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987543322211 12368999999999999988743
No 127
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2.5e-07 Score=85.68 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=86.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCce----EEECCCCCCCC--CCc
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFESVP--EGD 287 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~----~~~gd~~~~~p--~~D 287 (390)
+++.+. .++.++||+|||+|.++++.++-.. .+++++|+ |..++.++++ ++|. ....+..+... ..|
T Consensus 155 ~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 155 ALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 344443 4778999999999999999888653 45677776 7777777753 3444 22223222112 239
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|+++= | .+ -...+...+++.++|||+++++-.+. + ..+.+.+.++
T Consensus 232 vIVANI-L---A~-vl~~La~~~~~~lkpgg~lIlSGIl~-~----------------------------q~~~V~~a~~ 277 (300)
T COG2264 232 VIVANI-L---AE-VLVELAPDIKRLLKPGGRLILSGILE-D----------------------------QAESVAEAYE 277 (300)
T ss_pred EEEehh-h---HH-HHHHHHHHHHHHcCCCceEEEEeehH-h----------------------------HHHHHHHHHH
Confidence 988654 3 22 24589999999999999998865431 1 1455678888
Q ss_pred HCCCCeeEEEecCC
Q 016366 368 AAGFKGINFASCVC 381 (390)
Q Consensus 368 ~aGf~~~~~~~~~~ 381 (390)
++||.++++.....
T Consensus 278 ~~gf~v~~~~~~~e 291 (300)
T COG2264 278 QAGFEVVEVLEREE 291 (300)
T ss_pred hCCCeEeEEEecCC
Confidence 99999988876643
No 128
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.69 E-value=7e-08 Score=85.26 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=66.5
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEEC-------CCCCCC--CCC-cEEEecccccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG-------NMFESV--PEG-DAILMKWILHC 297 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~g-------d~~~~~--p~~-D~i~~~~vlh~ 297 (390)
..++|||||+|..++.++..+.+ +++.|. +.|++.+++.++++.... ++.+-. ++. |+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999888888887765 466676 899999998776554332 222211 223 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
|+-+ ++.+.++++||++|.++.+
T Consensus 113 Fdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hchH---HHHHHHHHHcCCCCCEEEE
Confidence 8643 7899999999987744433
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1e-07 Score=90.30 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCCC---
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE--- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p~--- 285 (390)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+..+.
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4455554 566789999999999999999998764 46788887 778777664 25799999998763332
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999988665543 234567899999988854
No 130
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.67 E-value=9.1e-08 Score=89.01 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=76.5
Q ss_pred CcceEEEEcCCccH--HHHH--HHhhCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 016366 227 NVERLVDVGGGFGV--TLSM--ITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~--~~~~--l~~~~p----~~~~~~~Dl-~~~~~~a~~~---------------------------- 269 (390)
+..+|...||++|. ++.+ +.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999993 4444 334332 467888888 7777776640
Q ss_pred ---------CCceEEECCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 ---------~rv~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+|+|...|..+ ++| .. |+|+|.+++.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 554 33 99999999999999999999999999999999988743
No 131
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.65 E-value=3.3e-07 Score=84.22 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=80.3
Q ss_pred CcceEEEEcCCcc----HHHHHHHhhCC-----CCeEEEecc-hHHHhhCCCC---------------------------
Q 016366 227 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G----~~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~~--------------------------- 269 (390)
+.-+|.-.||++| +++..+.+..| ++++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 45555666665 477888887 7788887740
Q ss_pred --------CCceEEECCCCC-C-CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 270 --------AGVEHVGGNMFE-S-VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 270 --------~rv~~~~gd~~~-~-~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..|.|...|..+ + .+.. |+|+|.|||-+++.+...+++++.+..|+|||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248899999988 4 4444 99999999999999999999999999999999999843
No 132
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.64 E-value=2.3e-07 Score=86.72 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=82.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~--D~i~~~~vl 295 (390)
.++.+|||||||+|.+++..++... -+++++|+ |..++.++++ +++.+. . ..+.+.. |+|+.+-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4567999999999999999888653 46778887 7777777753 344432 1 1233333 998855432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+-...+...+.+.|+|||+++++-.... ..+++.+.+++ ||++.+
T Consensus 236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 3356788889999999999998665521 14556777876 999988
Q ss_pred EEecCCceeE
Q 016366 376 FASCVCNLYI 385 (390)
Q Consensus 376 ~~~~~~~~~v 385 (390)
......=.++
T Consensus 281 ~~~~~~W~~l 290 (295)
T PF06325_consen 281 EREEGEWVAL 290 (295)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 8766543333
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.63 E-value=1.1e-07 Score=88.45 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=73.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
+++.+||+||||+|.++..+++..+..+++.+|+ +.+++.+++ .++++++.+|..+- .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3556999999999999999988765667888887 777776664 25788999888652 2233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...-...+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 876533322222 358899999999999998875
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=2.9e-07 Score=83.77 Aligned_cols=97 Identities=12% Similarity=0.211 Sum_probs=74.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC--------CCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------PEG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~--------p~~- 286 (390)
..++++|||||||+|..+..+++..+ +.+++.+|. +++++.|+++ ++|+++.+|+.+.+ ...
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998764 678999998 7777777652 57999999997621 122
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++.. ..+.-..++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9987743 2344558899999999999986654443
No 135
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.62 E-value=2.6e-08 Score=67.02 Aligned_cols=49 Identities=55% Similarity=0.792 Sum_probs=40.8
Q ss_pred HHHHHHHHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 39 MATQAAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
++|++|++|||||.|+++| +.|++||+.++...++.++..|+|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 999999999999324446778999999985
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=8.1e-08 Score=84.79 Aligned_cols=93 Identities=19% Similarity=0.356 Sum_probs=67.0
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC----CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~----~p~~--D~i~~~~vl 295 (390)
..+||||||.|.++..+++.+|+..++++|+ ...+..+.+ .+|+.++++|+..- ++.+ |-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 3899999999999999999999999999998 444444332 48999999999762 3333 655443
Q ss_pred ccCChhH-----------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 296 HCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+||+. ...+|..+.+.|+|||.|.+.+-.
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 34443 347999999999999998875543
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=1.8e-07 Score=80.86 Aligned_cols=102 Identities=10% Similarity=0.233 Sum_probs=70.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.++ ..+..++||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 34556665 5667899999999999999999983 56777777 677776654 3589999999988 66653 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHh--CCCCcEEEEEec
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKA--VPGNGKVIVMNS 325 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~--L~pgG~lli~e~ 325 (390)
.|+++--+| ...+ ++.++.+. +.++|.+++-..
T Consensus 80 ~vi~n~Py~-~~~~----~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPYN-ISTP----ILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCCcc-cHHH----HHHHHHhcCCCcceEEEEEEHH
Confidence 887665444 4433 34444433 346676665433
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=2.6e-07 Score=91.71 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=80.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCC-CC--CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SV--PE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~-~~--p~ 285 (390)
.+...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ . ++.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444455 56678999999999999999999888788999998 7777766542 1 23447777765 22 22
Q ss_pred --CcEEEec------cccccCChh-------H-------HHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 286 --GDAILMK------WILHCWDDD-------H-------CLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 286 --~D~i~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.|.|++. .+++..|+- + -.++|+++.+.|||||++++++-....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2999852 456655541 1 257999999999999999988766543
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=3.8e-07 Score=90.50 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC---CCC--
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-- 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~---~p~-- 285 (390)
.++..++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ .+++++++|+.+. .+.
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3344454 55678999999999999999999988788999998 7787777642 2478999999762 222
Q ss_pred CcEEEecc------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 GDAILMKW------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 ~D~i~~~~------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.|.|++.- ++.. ....+ ..++|+++.+.|+|||++++++-..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 39998422 1211 11111 2479999999999999999877543
No 140
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.3e-07 Score=79.00 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE-G 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p~-~ 286 (390)
...+++.+. +++..+|||||||+|..+.-+++-.. +++.+++ +...+.|++ ..+|.++++|...-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345666666 78889999999999999999888765 6666776 777777775 36799999999885554 3
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|+..-..-..|+. +.+.|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 999888776655543 3458999999998665
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=3.5e-07 Score=90.98 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=79.4
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C----CCC
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S----VPE 285 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~----~p~ 285 (390)
...+. ..++.+|||+|||+|..+..+++... ..+++++|+ +.+++.++++ .+|+++++|+.+ + .+.
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 33344 55678999999999999999998754 468999998 7777766542 468999999876 3 222
Q ss_pred -C-cEEEec------cccccCChh-------H-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 286 -G-DAILMK------WILHCWDDD-------H-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 286 -~-D~i~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. |.|++. .+++..++. + -.++|.++.+.|||||+++.++-..
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2 999863 455554431 1 2588999999999999998876443
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.55 E-value=1.3e-07 Score=84.25 Aligned_cols=102 Identities=21% Similarity=0.354 Sum_probs=73.2
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~- 285 (390)
...+++.+. +.+..+|||||||+|.++..++... +.-+++.+|. +...+.|+++ .+|+++++|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 346677777 7888999999999999999998864 4446778886 7788877753 5899999998875553
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+ |.|++.......|.. ..+.|++||++++.-.
T Consensus 140 apfD~I~v~~a~~~ip~~--------l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPEA--------LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--HH--------HHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHHH--------HHHhcCCCcEEEEEEc
Confidence 3 999998877655432 3457899999998444
No 143
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=80.52 Aligned_cols=93 Identities=16% Similarity=0.318 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCc--eEEECCCCC--CCCCC--cEEEeccccccC-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGV--EHVGGNMFE--SVPEG--DAILMKWILHCW- 298 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv--~~~~gd~~~--~~p~~--D~i~~~~vlh~~- 298 (390)
...-|||||||+|..+..+.... -.++++|+ |.|++.|.+ ..+ .++-+|+-+ |++.+ |.+++...++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 36789999999999888777653 67899999 999999886 223 477788877 55555 888777666543
Q ss_pred --------ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 299 --------DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 299 --------~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|......++..++..|++|++.++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 344456788999999999999776
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=5e-07 Score=90.20 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CCCC-
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPEG- 286 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p~~- 286 (390)
...+. ..++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++ .+|+++.+|+.+. ++..
T Consensus 243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 33444 5567899999999999999999976 6778999998 7777766542 4589999999762 3333
Q ss_pred cEEEecc------ccccCC-------hhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKW------ILHCWD-------DDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~------vlh~~~-------d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.- ++.+.| ..+ ...+|+++.+.|+|||+++.++-..
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9998742 121111 111 2468999999999999998765443
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.51 E-value=5.7e-07 Score=80.55 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=70.2
Q ss_pred cceEEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEeccccccCC-
Q 016366 228 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWD- 299 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~- 299 (390)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++. +++.++.+|+.. +.... |+|+++=-++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4568888888 8888888864 679999999987 44433 9999886555322
Q ss_pred -h--------hHHHHHHHHHHHhCCCCcE
Q 016366 300 -D--------DHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 300 -d--------~~~~~~L~~~~~~L~pgG~ 319 (390)
+ .-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1244689999997777664
No 146
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=1.1e-06 Score=94.66 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=85.5
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------------------CCceEEECCCCCCCC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFESVP 284 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------------------~rv~~~~gd~~~~~p 284 (390)
..+|||+|||+|..+..+++++|+.+++++|+ +.+++.|+++ +||+++++|+++.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999899999998 7777766421 379999999988554
Q ss_pred C----CcEEEec--ccccc----CC--------------------------hh----HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 285 E----GDAILMK--WILHC----WD--------------------------DD----HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 285 ~----~D~i~~~--~vlh~----~~--------------------------d~----~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. .|+|+++ ++... ++ ++ -.++++..+.+.|+|||++++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2988876 22110 00 01 125677888889999997663 3
Q ss_pred cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH-HHHHHCCCCeeEEEec
Q 016366 325 SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT-ELAIAAGFKGINFASC 379 (390)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~-~ll~~aGf~~~~~~~~ 379 (390)
.-.. ..+.+. +++++.||+.++++..
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeee
Confidence 3211 133456 5788888888777654
No 147
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=8.5e-07 Score=88.50 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=75.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEec--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMK-- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~-- 292 (390)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+..+. . |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45668999999999999999888653 458899998 7787776642 4689999999873333 3 999862
Q ss_pred ----cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 293 ----WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 293 ----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.++. .++.++ -.++|.++.+.|+|||++++.+-...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111 122222 23689999999999999998775543
No 148
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.48 E-value=3.6e-07 Score=87.01 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------------C----CceEEECCCCC-C----CC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFE-S----VP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------------~----rv~~~~gd~~~-~----~p 284 (390)
+..+|||+|||.|.=+........ -..+++|+ +..++.|+++ . ...++.+|.+. . ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 668999999999987777776543 36788898 5566666542 1 25678888875 2 22
Q ss_pred -C--C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 285 -E--G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 285 -~--~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. . |+|-|.+.||+. +.+.++.+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 3 999999999984 567788899999999999999987443
No 149
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.46 E-value=6.3e-07 Score=81.51 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=76.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHh-hCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p- 284 (390)
..|+..++ ..++.+|||.|.|+|.++..+++ -.|.-++.-+|. ++..+.|++. ++|++...|+.+ -++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 35666666 88999999999999999999997 468889999997 6666666642 579999999864 332
Q ss_pred ---CC-cEEEeccccccCChhHHHHHHHHHHHhC-CCCcEEEEEeccc
Q 016366 285 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAV-PGNGKVIVMNSIV 327 (390)
Q Consensus 285 ---~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG~lli~e~~~ 327 (390)
.. |.|++ ++|+++ ..+..+.++| +|||++++.-++.
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCH
Confidence 22 87664 678888 7899999999 8999999977663
No 150
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.42 E-value=3.3e-07 Score=82.38 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=68.8
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC----CC--CCCceEEECCCCC---C-CCCC--cEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PS--YAGVEHVGGNMFE---S-VPEG--DAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a----~~--~~rv~~~~gd~~~---~-~p~~--D~i~~~~vl 295 (390)
..+||||||.|.++..+|+++|+..++++++ ...+..+ .+ ..|+.++++|+.+ . ++.+ |-|++++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 5799999999999999999999999999997 3333322 22 2489999999876 2 3343 6665443
Q ss_pred ccCChhH-----------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 296 HCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
||+. ...+|+.+.+.|+|||.|.+.+-
T Consensus 128 ---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 ---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3332 34689999999999999987543
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=2e-06 Score=85.22 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=75.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C-C-CCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-V-PEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~-~-p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ ++++++.+|..+ + . +.. |.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999876 4578999998 7777776642 458899999875 3 2 223 999862
Q ss_pred ------cccccCCh-------h-------HHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 293 ------WILHCWDD-------D-------HCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 293 ------~vlh~~~d-------~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.++...|+ + .-.++|.++.+.|+|||.++.++-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222121 1 125789999999999999877665543
No 152
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=1.3e-06 Score=77.52 Aligned_cols=110 Identities=17% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------------CCCceEEECCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 279 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~rv~~~~gd~ 279 (390)
..+++.+. +.+...++|||||.|......+...+--+++++++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35556665 67788999999999999988887776556899987 444333321 25688999999
Q ss_pred CC-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 280 FE-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 280 ~~-~-----~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+ + +.++|+|++++.+ |+++ ...-|.+....||||.+++-...+.+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 87 4 2356999999986 5554 445567778889999988766555544
No 153
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.35 E-value=4.8e-06 Score=69.59 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-C--CC
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-S--VP 284 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~--~p 284 (390)
+...++.++..++ +..+.-|||+|.|+|.++.+++++. ++...+.++. ++......+ .+.++++.||.++ . +.
T Consensus 33 Ss~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 33 SSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred cHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 3344556666666 7778899999999999999999865 4445555554 666665554 5889999999986 3 22
Q ss_pred ---CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 285 ---EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 285 ---~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.. |.|++.--+-.+|-....++|+.+...|++||.++-...-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22 9999999999999999999999999999999998876665
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.35 E-value=2.6e-06 Score=79.04 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=74.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC--CCcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP--EGDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p--~~D~i~~~~ 293 (390)
..++.+|||+|||+|..+..+++... ...++++|+ +.+++.++++ .+|+++..|... +.. ..|.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999998764 357899998 7777666542 468899999765 322 239997631
Q ss_pred ------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 294 ------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 ------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
++.. +.++. -.++|+++.+.|+|||+|+.++-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2221 22222 24699999999999999987765443
No 155
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.31 E-value=3.3e-06 Score=77.93 Aligned_cols=91 Identities=11% Similarity=0.291 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCCc
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~D 287 (390)
+...+++.++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 3456666665 667789999999999999999999876 555554 777776654 3689999999988 655334
Q ss_pred ---EEEeccccccCChhHHHHHHHHHHH
Q 016366 288 ---AILMKWILHCWDDDHCLRILKNCYK 312 (390)
Q Consensus 288 ---~i~~~~vlh~~~d~~~~~~L~~~~~ 312 (390)
+|+. +.=++.+. .++.++..
T Consensus 94 ~~~~vvs-NlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVS-NLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEE-cCChhhHH----HHHHHHhc
Confidence 4444 43333443 44555543
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.29 E-value=4.7e-06 Score=83.19 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=69.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV----- 283 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~----- 283 (390)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++++|+.+.+
T Consensus 287 ~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 287 ARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 34445444 4566799999999999999999886 47888887 8888877752 57999999987522
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 284 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+. . |+|++.=--. ...++++.+.+ ++|++.++++-
T Consensus 364 ~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 364 ALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEe
Confidence 22 2 9987643221 12245555555 68888777743
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.27 E-value=6.1e-06 Score=78.04 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=92.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEE----CCCCCCC--CC-C-cEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVG----GNMFESV--PE-G-DAI 289 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~----gd~~~~~--p~-~-D~i 289 (390)
...++||||||+|.....++.+.++.+++++|+ +.+++.|++. ++|+++. .+++..+ +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888888999999998 7788877742 3577754 2333322 22 2 999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhh
Q 016366 290 LMKWILHCWDDDH---CLRILKNCY----------------KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR 350 (390)
Q Consensus 290 ~~~~vlh~~~d~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 350 (390)
+|+=-+|.-.++. ..+-.++.. +.+.+||.+-++..+..+. ..+.....+ +..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gw-ftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLW-FTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcE-EEEE
Confidence 9998887654432 112222222 3344677766665554331 000111111 1111
Q ss_pred cCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 351 DGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 351 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
-++.-+.+.+.+.|++.|.+.++++.+.
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 2556689999999999999888887764
No 158
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.25 E-value=2.3e-05 Score=68.89 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=89.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCC---C--cEEEeccccccCChh
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDD 301 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~ 301 (390)
..++|||||=+...... .++-..++.+|+... .-.+.+.||++ |+|. . |+|.++-||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 36999999976654433 244456788887321 12456789998 8873 2 999999999999954
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 302 -HCLRILKNCYKAVPGNGK-----VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 302 -~~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
..-++|+++++.|+|+|. |+|+-+.. . ..|.+..+.+.|+++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------------C---v~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------------C---VTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------------H---hhcccccCHHHHHHHHHhCCcEEEE
Confidence 466799999999999999 77754431 1 1267778899999999999999988
Q ss_pred EEecC
Q 016366 376 FASCV 380 (390)
Q Consensus 376 ~~~~~ 380 (390)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76554
No 159
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.23 E-value=4.8e-06 Score=78.74 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC----CCCeEEEecc-hHHHhhCCC------CCCceE--EECCCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFES 282 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~Dl-~~~~~~a~~------~~rv~~--~~gd~~~~ 282 (390)
.+|+..++ ...+|+|+|||+|.=+..+++.. ..++++.+|+ .+.++.+.+ .+.+++ +++|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45555554 45689999999998777766654 3467899998 445554432 356665 88998662
Q ss_pred ---CC-----CC-cEE-EeccccccCChhHHHHHHHHHHH-hCCCCcEEEE
Q 016366 283 ---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AVPGNGKVIV 322 (390)
Q Consensus 283 ---~p-----~~-D~i-~~~~vlh~~~d~~~~~~L~~~~~-~L~pgG~lli 322 (390)
++ .. .++ ++.+.+.+++++++..+|+++++ .|+||+.++|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 22 12 444 66789999999999999999999 9999998887
No 160
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.22 E-value=4.9e-06 Score=77.25 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCC---CCC-CcEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES---VPE-GDAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~---~p~-~D~i~ 290 (390)
+++++||-||+|.|..++++++..+..+++.+|+ +.+++.+++. +|++++.+|..+- .+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999998888888888 9999988862 7899999998762 333 39998
Q ss_pred eccccccCC--hhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 291 MKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+...=.--+ .---..+++.|+++|+++|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 776543111 001247999999999999988875
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.22 E-value=4.9e-06 Score=76.59 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=75.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-HHHhhCCCC--------C----CceEEECCCCC-C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY--------A----GVEHVGGNMFE-S 282 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~~--------~----rv~~~~gd~~~-~ 282 (390)
.++..+. ++...++|+|||-|.=++..-++.- -..+++|++ ..+++|+++ . -+.|+++|-+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444443 5667899999999987777665532 257899984 457777753 1 26788887654 1
Q ss_pred ----C--CC--CcEEEecccccc-C-ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 283 ----V--PE--GDAILMKWILHC-W-DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 283 ----~--p~--~D~i~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+ ++ .|+|-|.+++|+ | +.+.++.+|+++.+.|+|||.++-
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 2 22 399999999998 3 466788899999999999998774
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.22 E-value=5.7e-06 Score=76.49 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=60.9
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCCCc
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~~D 287 (390)
.+..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 3455666655 5667899999999999999999985 36777776 777776654 3689999999988 666558
Q ss_pred EEEeccccc
Q 016366 288 AILMKWILH 296 (390)
Q Consensus 288 ~i~~~~vlh 296 (390)
.|+++-.++
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 888765544
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.21 E-value=2.4e-06 Score=75.85 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=73.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC--------CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP--------EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p--------~~- 286 (390)
..++.+|||||+++|..+..+++..| +.+++.+|. +...+.|++ .++|+++.||..+.++ ..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45788999999999999999999886 588998987 767776664 2689999999865211 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.. ........+..+.+.|+|||.+++-+...
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9988765 33445688999999999999866544443
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.20 E-value=5.2e-06 Score=77.40 Aligned_cols=75 Identities=11% Similarity=0.240 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~ 288 (390)
..+++.+. ...+.+|||||||+|.++..++++.+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45566555 56778999999999999999999986 5666666 8888877653 689999999987 55543 56
Q ss_pred EEecc
Q 016366 289 ILMKW 293 (390)
Q Consensus 289 i~~~~ 293 (390)
|+++-
T Consensus 109 vv~Nl 113 (272)
T PRK00274 109 VVANL 113 (272)
T ss_pred EEEeC
Confidence 65543
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.19 E-value=3.8e-06 Score=72.80 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=66.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCC-----CC-C-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV-----PE-G-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~-----p~-~-D~ 288 (390)
..++.+|||+|||+|..+..+++..+..+++..|.+.+++..+. .+++.+...|..++. .. . |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999999877778888898656664442 256888888875532 22 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+.+.++++ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 4556799999999999999877766654
No 166
>PLN02476 O-methyltransferase
Probab=98.19 E-value=8.7e-06 Score=75.32 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=74.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC--------CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP--------EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p--------~~- 286 (390)
..++++|||||+++|..+..++...| +.+++.+|. +...+.|++ .++|+++.||+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56789999999999999999998775 567888887 667777665 2689999999876221 22
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.. +...-..++..+.+.|+|||.+++ |.++
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVM-DNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEE-ecCc
Confidence 8887654 345567899999999999998665 4443
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.18 E-value=2.8e-05 Score=70.10 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=83.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh-hCCCCCCceE-EECCCCC-C---CC-C-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVEH-VGGNMFE-S---VP-E- 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~-~a~~~~rv~~-~~gd~~~-~---~p-~- 285 (390)
...+++.++......++||+|||+|.++..+++. +.-+++++|. +.++. ..++.+++.. ...|+.. . ++ +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 3455665551235678999999999999999987 3457899998 43555 4666666543 3335442 1 11 1
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE-EEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI-VMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.|+++++.. .+|..+.+.|+| |.++ ++-+.+.-.+.. ........|- .......+++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~-------~~~~~~~~~~ 201 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDK-------EAIALALHKV 201 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCH-------HHHHHHHHHH
Confidence 155554433 358888999999 5444 444433221100 0000000000 0111235667
Q ss_pred HHHHHHCCCCeeEEEecC
Q 016366 363 TELAIAAGFKGINFASCV 380 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~~ 380 (390)
..++.+.||++..+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 202 IDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHcCCCeEeeEEECC
Confidence 778888999998887765
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=6.9e-06 Score=73.10 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=79.4
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEE-CCCCCCCC---
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFESVP--- 284 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~-gd~~~~~p--- 284 (390)
++..+-...++++|||||.+.|..+..++...| +.+.+.+|. ++..+.|+++ ++|+++. +|..+.+.
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~ 129 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL 129 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc
Confidence 333333356889999999999999999999999 888899998 8888888863 5688888 58765222
Q ss_pred -CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 285 -EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.. |+|+... ....-.++|..+.+.|+|||.+++-+...+
T Consensus 130 ~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 130 DGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred CCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 23 9987654 334456899999999999997665444443
No 169
>PLN02823 spermine synthase
Probab=98.17 E-value=6.3e-06 Score=78.65 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=71.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCCC---CC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESVP---EG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~p---~~-D~i~ 290 (390)
.++.+||.||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-+. +. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766667888887 888888775 2689999999987322 23 9998
Q ss_pred eccccccC---Ch--hHHHHHHH-HHHHhCCCCcEEEEE
Q 016366 291 MKWILHCW---DD--DHCLRILK-NCYKAVPGNGKVIVM 323 (390)
Q Consensus 291 ~~~vlh~~---~d--~~~~~~L~-~~~~~L~pgG~lli~ 323 (390)
+.-. ..+ +. ---..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7631 111 00 01236787 899999999987753
No 170
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.14 E-value=1.1e-05 Score=71.27 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=65.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C--CcEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E--GDAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~--~D~i~~~~vl 295 (390)
...++||+|||+|.++..++.+.. .+++.+|. +.+++.++++ .+++++++|+++.++ . .|+|++.=-+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 57888887 6676665542 478999999876332 2 3999987664
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEec
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~ 325 (390)
+.- ....+++.+.+ .|+|++.+++...
T Consensus 132 ~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RKG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 332 22345555555 3789887776544
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.14 E-value=9.5e-06 Score=76.18 Aligned_cols=90 Identities=13% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p 284 (390)
++..+++... ..+..+|||||||+|.++..+++.... ++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~--V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKK--VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCc--EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3445666555 567789999999999999999998654 566665 777776654 3679999999987 665
Q ss_pred CCcEEEeccccccCChhHHHHHH
Q 016366 285 EGDAILMKWILHCWDDDHCLRIL 307 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L 307 (390)
..|+|+++- =++++.+...++|
T Consensus 101 ~~d~VvaNl-PY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVANV-PYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEecC-CcccCcHHHHHHH
Confidence 558777643 3345555544555
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=6e-06 Score=75.11 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCC-h
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD-D 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~-d 300 (390)
.....++|+|||.|.++.- +|.+..++.|+ ...+..+++.+.......|+.. |.++. |..+...++||++ .
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3567899999999977643 48888999998 5566666654444677889887 76653 9999999999987 4
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.....+++++.+.++|||..+|.
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEE
Confidence 44667999999999999997774
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.10 E-value=8e-06 Score=80.98 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=77.5
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhcc---CCcceEEEEcCCccHHHHHHHhhC----CCCeEEEecc-h
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF---QNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-P 260 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~---~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~Dl-~ 260 (390)
.|+-+++|+.....|.+++. ..+.+..... .....|+|||||+|-++...+++. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 56777788888788887652 1223322211 125689999999999987776654 4578888885 3
Q ss_pred HHHhhC----CC---CCCceEEECCCCC-CCCCC-cEEEeccccccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 016366 261 HVVQDA----PS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWD-DDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 261 ~~~~~a----~~---~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~ll 321 (390)
.++... +. .++|+++.+|+++ ..|.- |+|++-.. ..+. .+-....|....+.|+|||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 322221 21 2789999999999 77754 99975432 2222 2334567888899999998765
No 174
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.04 E-value=1e-05 Score=85.20 Aligned_cols=96 Identities=8% Similarity=0.061 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCC---CCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---PEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~---p~~-D~i~~~~ 293 (390)
.+.+|||+|||+|.++..+++.. ..+++.+|+ +.+++.++++ ++++++++|+++.+ +.. |+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 346899998 7788877752 37999999987632 333 9999852
Q ss_pred cccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHC--------W-DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~--------~-~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
-... + ......+++..+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1100 0 0123457899999999999988764
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=4.8e-05 Score=68.69 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEEC----CCCCCC--CCC--cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGG----NMFESV--PEG--DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~g----d~~~~~--p~~--D~i 289 (390)
.....|||+|||+|..+..++...|+.+++.+|. +.++..|.+ .+++..+.- |...+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3445899999999999999999999999999998 666665554 267877744 444433 234 888
Q ss_pred Eec--cccccC-C---------------------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMK--WILHCW-D---------------------DDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~--~vlh~~-~---------------------d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+++ +|.+.= . -+....++.-+.|.|+|||.+.+--
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 876 333310 0 0113456677788999999876533
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=1.9e-05 Score=72.46 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=66.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCCCC-CcEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESVPE-GDAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~p~-~D~i~~~~ 293 (390)
+++.+||-||||.|..++++++. |. +++.+|+ +.|++.+++ .+|++++.. +.+...+ .|+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 57799999999999999999987 43 7777777 889988887 278888762 2221222 39999875
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. + + ..+.+.++++|+|||.++..
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEEC
Confidence 3 2 2 26789999999999988863
No 177
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.00015 Score=61.64 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred cceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCC-CC-cEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p-~~-D~i~~~~vlh~~ 298 (390)
+.-++|||||+|..+..+++.. |++.....|+ |.+++...+. -++..++.|+.+-+. .. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 5779999999999999988854 8888899998 7777664432 346788888877333 33 888776443322
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCH
Q 016366 299 DDDH-------------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 359 (390)
Q Consensus 299 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~ 359 (390)
+++. ..++|..+-..|.|.|.+++..... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 2222 2345555556666666666533321 125
Q ss_pred HHHHHHHHHCCCCeeEEEec---CCceeEEEEe
Q 016366 360 KEYTELAIAAGFKGINFASC---VCNLYIMEFF 389 (390)
Q Consensus 360 ~e~~~ll~~aGf~~~~~~~~---~~~~~vi~~~ 389 (390)
+++.+.+++-||.......- ....+++..+
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 66777888888876544322 1344555443
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.00 E-value=1.6e-05 Score=73.41 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=70.6
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 298 (390)
.+-|||||||+|.++...+++. .-++..++...|.+.|++. +||.++.|-+++ ++|+. |+|++--.=..+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4678999999999998887765 4578888888888888762 789999999999 89976 998865332223
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEE
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
-++...+-.-.+++.|+|.|+++
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 33444444556789999999865
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.00 E-value=1.2e-05 Score=81.45 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=69.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCC-----CCCCceEEECCCCC---CCCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAP-----SYAGVEHVGGNMFE---SVPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~-----~~~rv~~~~gd~~~---~~p~~--D~i~~~~v 294 (390)
....+||||||.|.++..+++.+|+..++++|+ +.+....+ ...|+.++++|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 456799999999999999999999999999997 33322222 13678888888742 35544 77665432
Q ss_pred cccCCh-------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 295 LHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 295 lh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
== |+- --...+|+.+++.|+|||.+.+.+-
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 21 111 1145789999999999999887543
No 180
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.00 E-value=2.9e-05 Score=72.37 Aligned_cols=112 Identities=13% Similarity=0.307 Sum_probs=78.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCCC----CCceE--EECCCCC---CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFE---SV 283 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~----~rv~~--~~gd~~~---~~ 283 (390)
+.++...++.+ .+.+|||+|+|.|..+-++...++.. +++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 34555555533 45799999999999888888777743 4788887 6777765531 11111 1111111 33
Q ss_pred CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 284 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 284 p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+..|+|+++++|-.+++....++++++.+.+.+ .|+|+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 344999999999999998888999999888866 99999987655
No 181
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=7.4e-05 Score=65.71 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CC--ceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AG--VEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~r--v~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
+.....+|||||-|....++..+. --+.+-.|. ..|++.++.. +. +....+|-+. ++.+. |+|+.+-.+|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 345689999999999999999876 225677786 6788888764 44 3456677665 66654 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc------cCHHHHHHHHHHCCC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE------RTKKEYTELAIAAGF 371 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~------~t~~e~~~ll~~aGf 371 (390)
.+| ...-..+|..+|||+|.++- ..+-.+. ..+......+.-+-.. +|.. -...+.-.+|..|||
T Consensus 150 ~Nd--LPg~m~~ck~~lKPDg~Fia-smlggdT-----LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKPDGLFIA-SMLGGDT-----LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hcc--CchHHHHHHHhcCCCccchh-HHhcccc-----HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCc
Confidence 765 34779999999999997653 2221221 1122222222222221 3321 134677889999999
Q ss_pred CeeEEE
Q 016366 372 KGINFA 377 (390)
Q Consensus 372 ~~~~~~ 377 (390)
+...+.
T Consensus 221 ~m~tvD 226 (325)
T KOG2940|consen 221 SMLTVD 226 (325)
T ss_pred ccceec
Confidence 987664
No 182
>PRK04148 hypothetical protein; Provisional
Probab=97.96 E-value=6.4e-05 Score=61.55 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=69.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH-HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC---CC-cEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAI 289 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p---~~-D~i 289 (390)
..+.+.++ .....+++|||||+|. ++..+.+. +..++++|+ +..++.+++. .+.++.+|++++-+ .+ |+|
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEE
Confidence 34555555 3345789999999996 77777765 457788887 7778877653 57999999999533 23 998
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+... |..+...-+.++.+.. |.-++|...
T Consensus 82 ysir-----pp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 8766 5566677777777766 344555433
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.96 E-value=1.3e-05 Score=78.47 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=68.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEec---c-hHHHhhCCCCCCceEEECCC---CCCCCCC--cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFD---L-PHVVQDAPSYAGVEHVGGNM---FESVPEG--DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D---l-~~~~~~a~~~~rv~~~~gd~---~~~~p~~--D~i~~~~vlh~ 297 (390)
....+||||||+|+|+..|+.+. +..+.+- . +..++.|.++. |-.+-+-+ .=|+|.. |+|-|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccccccc
Confidence 34578999999999999999874 4333222 2 33444444432 22222222 2277765 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|...+ ..+|-++-|+|+|||+++++.+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98665 3689999999999999998776544
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.94 E-value=2.9e-05 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=73.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC---------CC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP---------EG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p---------~~ 286 (390)
..++.+|||||+++|..+..+++.. ++.+++.+|. ++..+.|++ .++|+++.||+.+-++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567899999999999999999876 4678888887 666666654 2789999999876221 23
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++..- ...-...+..+.+.|+|||.+++ |.++
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence 88877642 34456889999999999998554 5543
No 185
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.94 E-value=3.1e-05 Score=75.80 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=68.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCC------CC-CcEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PE-GDAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~------p~-~D~i~ 290 (390)
.+.+|||+|||+|.++...+.. +..+++.+|+ +.+++.++++ ++++++.+|+++.+ .. .|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999998876653 3458899998 7788777652 36899999998732 12 29999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.=-...-+. ....++++.+.+.|+|||.++.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8733211111 123456677899999999988654
No 186
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.93 E-value=1.1e-05 Score=73.88 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=73.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~-~-D~i 289 (390)
+++.+||-||+|.|..+.++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999997765667888887 888888775 2689999999865 3334 4 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+....=-..+.. -...+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 874432111111 13488999999999999988755
No 187
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=1.9e-05 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCC-CC-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~~-D~i~~~~vlh 296 (390)
..++|||||||+|.++..-+++. ..++.++|-..+.+.+++. +.|+++.|.+++ .+| +- |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999887 5688999977777766652 458999999988 777 33 9997765433
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCcEEE
Q 016366 297 CWD-DDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 297 ~~~-d~~~~~~L~~~~~~L~pgG~ll 321 (390)
.+- +.-...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 322 3333345555567999999765
No 188
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.87 E-value=6.2e-05 Score=74.96 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=66.2
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC-----CCC
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-----VPE 285 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~-----~p~ 285 (390)
+.+.+. ..+..+|||+|||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+. ...
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 344343 45668999999999999999998753 6788887 8888887752 5799999998652 112
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
. |+|++.=---.+ ...+++.+.+ ++|++.+++
T Consensus 361 ~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 361 QIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 888764321111 1255666554 788887666
No 189
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.85 E-value=6.8e-05 Score=66.55 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=85.8
Q ss_pred EEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCC---CcEEEeccccccCC
Q 016366 231 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE---GDAILMKWILHCWD 299 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~---~D~i~~~~vlh~~~ 299 (390)
|.||||.+|.+...++++...-+++..|+ +..++.|++ .++|+++.+|-++.++. .|+|+... +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence 68999999999999999998888999998 777777765 26899999999886554 37777665 45
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
..-..++|.+....+++...|++ -+. .....+++||.+.||.+++-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lIL-qP~------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLIL-QPN------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEE-EES------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEE-eCC------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 56677888888777766556554 111 12567899999999999987655
Q ss_pred C---CceeEEEE
Q 016366 380 V---CNLYIMEF 388 (390)
Q Consensus 380 ~---~~~~vi~~ 388 (390)
. -++.|+.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 4 23345544
No 190
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.84 E-value=5.4e-05 Score=72.11 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=50.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCC-CcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPE-GDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~-~D~i~~~ 292 (390)
.+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. ++++++++|+.+ . ... .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 35799999999999999999854 57888887 8888877642 579999999976 2 112 3998876
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00011 Score=67.10 Aligned_cols=93 Identities=12% Similarity=0.328 Sum_probs=66.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC----CCCceEEECCCCC-CCCC--C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE--G 286 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~rv~~~~gd~~~-~~p~--~ 286 (390)
.+..+++... ..+..+|+|||+|.|.++..++++...+.++.+| +.+++..++ .++++++.+|+.. ++++ .
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3456777666 5667899999999999999999999888888888 555555443 4789999999998 8885 3
Q ss_pred -cEEEeccccccCChhHHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKN 309 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~ 309 (390)
+.|+.+-- ++.+.+-..++|..
T Consensus 96 ~~~vVaNlP-Y~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLP-YNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCC-CcccHHHHHHHHhc
Confidence 66554433 33444444444433
No 192
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=0.00027 Score=60.71 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=92.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHH------------hhCCC--CCCceEEECCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVV------------QDAPS--YAGVEHVGGNMFE 281 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~------------~~a~~--~~rv~~~~gd~~~ 281 (390)
+++.... ++...+|+|+=.|.|.++..+...- |.-.++.+- |.-. ..+++ ..+++.+..+...
T Consensus 39 E~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~-p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV-PAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEec-chhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence 3444333 7888999999999999998887743 333333221 2111 11111 2456666665554
Q ss_pred -CCCCC-cEEEeccccccC-----ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCC
Q 016366 282 -SVPEG-DAILMKWILHCW-----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 354 (390)
Q Consensus 282 -~~p~~-D~i~~~~vlh~~-----~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 354 (390)
..|+. |+++.....|++ ....+.++.+.++++|||||.+++.|.........+... .-
T Consensus 117 ~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~---------------~~ 181 (238)
T COG4798 117 LGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI---------------TL 181 (238)
T ss_pred cCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh---------------hh
Confidence 44444 888775555543 244567899999999999999999999865533221110 11
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 355 RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...+.+...+..+++||+..--..+
T Consensus 182 ~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cccChHHHHHHHHhhcceeeeeehh
Confidence 1246788888999999998765544
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5e-05 Score=65.99 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=67.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC----------------CCceEEECCCCCCCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFESVP- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~----------------~rv~~~~gd~~~~~p- 284 (390)
+.++.++||||+|+|.++..+++-- +....+++|. |+.++.+++. .++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5678899999999999998888532 3344478887 8888876641 468899999987333
Q ss_pred CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+ |.|.+.-. +.++.+++-..|+|||+++|-
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 33 99887732 236678888899999999873
No 194
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.0001 Score=63.33 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCCcEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~ 299 (390)
-...+|+|+|||||.++...+...|. +++++|+ |++++.++++ .+|+|+..|+.+.-...|.++++=-+.-+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 35678999999999999998877653 5666776 8888888864 579999999876433347777664443321
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...=+.+|.+..+.- -.++ . -++.-+.+-+++..++.|+++....
T Consensus 123 rhaDr~Fl~~Ale~s---~vVY----------------------s--------iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 123 RHADRPFLLKALEIS---DVVY----------------------S--------IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccCCHHHHHHHHHhh---heEE----------------------E--------eeccccHHHHHHHHHhcCCeEEEEE
Confidence 111124455544432 0000 0 1111267778888899998887653
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.69 E-value=1.7e-05 Score=68.49 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=85.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCC---CcEEEeccccccCChhH
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE---GDAILMKWILHCWDDDH 302 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~---~D~i~~~~vlh~~~d~~ 302 (390)
+.+.++||+|+|.|..+..++..+.++-++.+. ..|..+.++. +.++... .+.... -|+|.|.++|.-.-++-
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhcChH
Confidence 346899999999999999998877665444443 5566665542 1222211 111111 29999999998776665
Q ss_pred HHHHHHHHHHhCCC-CcEEEEEecccCC------CCCcchHHhhhhhhhhhhhhhcCCCcccC--HHHHHHHHHHCCCCe
Q 016366 303 CLRILKNCYKAVPG-NGKVIVMNSIVPE------IPEVSSAARETSLLDVLLMTRDGGGRERT--KKEYTELAIAAGFKG 373 (390)
Q Consensus 303 ~~~~L~~~~~~L~p-gG~lli~e~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~g~~~t--~~e~~~ll~~aGf~~ 373 (390)
++|+.++.+|+| +|++++. .+.|- +....+. +... .+- . +|+.+. ...+.++|+++||.+
T Consensus 187 --kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~-rPdn-----~Le-~-~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 187 --KLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPL-RPDN-----LLE-N-NGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred --HHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcC-CchH-----HHH-h-cCccHHHHHHHHHHHHHhcCchh
Confidence 899999999999 7887653 22221 1111111 0000 111 1 454332 344678899999999
Q ss_pred eEEEecC
Q 016366 374 INFASCV 380 (390)
Q Consensus 374 ~~~~~~~ 380 (390)
...+..+
T Consensus 256 eawTrlP 262 (288)
T KOG3987|consen 256 EAWTRLP 262 (288)
T ss_pred hhhhcCC
Confidence 8777665
No 196
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00049 Score=60.45 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecchHHHhhCCCCCCceEEECCCCC-CC-----
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SV----- 283 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~----- 283 (390)
+.+...+|.+.+.-+.+..+|+|+|+..|+.+.-+++... ..+++++|+.++-.. ++|.++++|+++ +.
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHH
Confidence 3345567777776567889999999999999998888764 456899997554443 459999999987 32
Q ss_pred ---CC-C-cEEEec---cccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 284 ---PE-G-DAILMK---WILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 284 ---p~-~-D~i~~~---~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+. . |+|++. ++-.++. -.-+..++.-+.+.|+|||.+++-.+.
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 787643 2222222 223556788888899999999986665
No 197
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=66.24 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
++..|.+.-+ ..+...|||||.|||.++..++++...+-++..| |.|++...++ .+.+++.||++. ++|.
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 3456676666 7888999999999999999999998766666666 7777665542 468999999998 8887
Q ss_pred CcEEEecc
Q 016366 286 GDAILMKW 293 (390)
Q Consensus 286 ~D~i~~~~ 293 (390)
-|+++.+-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 78877643
No 198
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.63 E-value=7.5e-05 Score=68.27 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred EEECCCCC--CC------CC-CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh
Q 016366 274 HVGGNMFE--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 342 (390)
Q Consensus 274 ~~~gd~~~--~~------p~-~D~i~~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 342 (390)
++..|..+ |+ |+ .|+|++..+|.... .++-.+.++++.++|||||.|++....-... ..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 66778876 33 23 49999999998753 4557789999999999999999877653220 00
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 343 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 343 ~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
..-.. + ..-..+.+.+++.|+++||.+.+...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11234799999999999999988874
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.63 E-value=0.00016 Score=63.52 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=59.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC---CC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP---EG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p---~~-D~i~~ 291 (390)
...++||++||+|.++.+++.+... +++.+|. +.+++.++++ ++++++.+|.++. .. .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4578999999999999999998753 6788887 6666655542 4689999999552 21 12 66655
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEE
Q 016366 292 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIV 322 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli 322 (390)
.=-+.. ....+++..+. ..|+++|.+++
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 433322 11234444443 36788886554
No 200
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.59 E-value=0.00017 Score=70.44 Aligned_cols=90 Identities=7% Similarity=-0.052 Sum_probs=62.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C-CcEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~-~D~i~~~~vl 295 (390)
...+|||+|||+|.++..++... .+++++|. +.+++.++++ ++++++.+|+.+..+ . .|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 34789999999999999999654 57888887 7788777652 478999999865221 2 3988876332
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
-.. ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 124455554 47888877764
No 201
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00089 Score=59.73 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC----CeEEEecc-hHHHhh-----CCCCCC--ceEEECCCCCC---CCCC---c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDL-PHVVQD-----APSYAG--VEHVGGNMFES---VPEG---D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl-~~~~~~-----a~~~~r--v~~~~gd~~~~---~p~~---D 287 (390)
.+..+++|+|.|+-.=+..++..+.. .+++-+|+ ..+++. .++++. |.-+++|+..+ +|.+ =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999888777776655 77888897 444432 234555 44577888653 4443 4
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
.++..+.|.++++++|..+|.+++.+|+||-++++
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 56888999999999999999999999999998887
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.58 E-value=0.00011 Score=64.10 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccC--CcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCCC--------
Q 016366 214 AMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES-------- 282 (390)
Q Consensus 214 ~~~~l~~~~~~~~--~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~-------- 282 (390)
...++.+.++-++ +..++||+||++|.++..++++. +..+++++|+..+- ...++.++++|+.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 3456777776333 45899999999999999999987 67889999984441 113445555555431
Q ss_pred -CC---CC-cEEEeccccccC---------ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 -VP---EG-DAILMKWILHCW---------DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 -~p---~~-D~i~~~~vlh~~---------~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+ .. |+|++.-....- .-.-+...|.-+.+.|+|||.+++--..
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 12 23 888776622211 1122445566667789999988875443
No 203
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.57 E-value=0.0001 Score=63.63 Aligned_cols=99 Identities=15% Similarity=0.322 Sum_probs=65.7
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHh-------hCCC------CCCceEEECCCCCCCCCC-cEEEecc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-------DAPS------YAGVEHVGGNMFESVPEG-DAILMKW 293 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~-------~a~~------~~rv~~~~gd~~~~~p~~-D~i~~~~ 293 (390)
..+.|||||-|.++..++..+|+.-+.+.++ -.|.+ ..+. ..++.+...+...-+|.- .--.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4699999999999999999999999999987 22322 2221 245677766665534431 1111222
Q ss_pred ccccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 294 ILHCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 294 vlh~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.++.+||+. ...++.+..-.|++||.++.++-+.
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 333344433 3457888889999999999876653
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.55 E-value=0.00016 Score=67.60 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=60.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-C--CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-S--VPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~--~p~ 285 (390)
..++++.+. ..+...++|.+||.|.++..+++..| +.+++++|. |.+++.+++. +|++++.+|+.+ . .+.
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 456777776 56677999999999999999999986 789999998 8888887753 489999999875 1 222
Q ss_pred ---C-cEEEec
Q 016366 286 ---G-DAILMK 292 (390)
Q Consensus 286 ---~-D~i~~~ 292 (390)
. |+|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 3 777655
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00071 Score=59.92 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=86.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC---CCCCC--cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPEG--DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~---~~p~~--D~i~ 290 (390)
.+...+|||...|-|.++++.+++.- .+++-++- |.+++.|.-+ .+|+++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999998864 24444433 8888887754 358999999987 35543 8764
Q ss_pred eccccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 291 MKWILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 291 ~~~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+=| .--...+-++++|.|+|||+++=..-.... .....| -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ryrG~d-------------~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RYRGLD-------------LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------ccccCC-------------hhHHHHH
Confidence 4322 223558899999999999997643222110 011111 1456678
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
.|+++||.+++....
T Consensus 264 RLr~vGF~~v~~~~~ 278 (287)
T COG2521 264 RLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHhcCceeeeeehh
Confidence 899999998776544
No 206
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.53 E-value=0.0028 Score=58.38 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=90.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc------hHHHhhCCC-------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS------------------------------- 268 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl------~~~~~~a~~------------------------------- 268 (390)
+...+||-=|||-|+++-+++.+.-.+.+..++. .-++....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3457999999999999999999854444433331 112222111
Q ss_pred --------CCCceEEECCCCC-CCCC---C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 269 --------YAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 269 --------~~rv~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
..++....|||.+ ..+. + |+|+.++.+-- .+.+.+.|+.|++.|||||..+=.-+..-...
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~--- 209 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE--- 209 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC---
Confidence 0247788999988 3222 2 99988866643 34578999999999999997664444432210
Q ss_pred hHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 335 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
+.. ......-+.+.+|++++.++.||++++...
T Consensus 210 ---------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 ---------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000123567999999999999999987654
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00027 Score=61.67 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=67.7
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-h---HHHhhCCC---CCCceEEECCCCC-CCCCC-cEEEeccccccCCh
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 300 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d 300 (390)
+++|||+|.|.-+.-++-.+|+.+++.+|. . ..++.+.. .++++++++.+++ ..+.. |+|+++-+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999995 2 23333332 4789999999887 33333 999988764 2
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
...++.-+...+++||++++.-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3378899999999999988753
No 208
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.47 E-value=0.0026 Score=58.80 Aligned_cols=148 Identities=12% Similarity=0.113 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCC----------CCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV----------PEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~----------p~~ 286 (390)
.+...|+.+|||-=.....+... +++++..+|+|++++.-++ ..++.++..|+.+.+ +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999988777766422 3688999999988774332 257889999986321 112
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-hhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~g~~~t~~e~~~ 364 (390)
-++++-.++.+++.+++.++|+.+.+...||+.++ .|.+.+-.. ............... ....+--...+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 68888999999999999999999999988888766 555543111 000000000000000 00000011246899999
Q ss_pred HHHHCCCCeeEE
Q 016366 365 LAIAAGFKGINF 376 (390)
Q Consensus 365 ll~~aGf~~~~~ 376 (390)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
No 209
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.36 E-value=0.0091 Score=57.88 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=87.8
Q ss_pred CcceEEEEcCCccHHHHHH--------Hhh-------CCCCeEEEecchH-----H---HhhCCC------------CCC
Q 016366 227 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH-----V---VQDAPS------------YAG 271 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~Dl~~-----~---~~~a~~------------~~r 271 (390)
+..+|+|+|||+|.++..+ .++ -|...+..-|+|. . +...++ ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4668999999999766443 222 2567788788752 1 111110 011
Q ss_pred ---ceEEECCCCC-CCCCC--cEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 016366 272 ---VEHVGGNMFE-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 309 (390)
Q Consensus 272 ---v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d--~----------------------------------~~~~~L~~ 309 (390)
+.-+.|+|.+ -+|.. +++++++.||+++. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689988 68876 99999999998862 1 11234555
Q ss_pred HHHhCCCCcEEEEEecccCCC-CCcch-HH------hhhhhhhhhhhhhc-------CC--CcccCHHHHHHHHHHCC-C
Q 016366 310 CYKAVPGNGKVIVMNSIVPEI-PEVSS-AA------RETSLLDVLLMTRD-------GG--GRERTKKEYTELAIAAG-F 371 (390)
Q Consensus 310 ~~~~L~pgG~lli~e~~~~~~-~~~~~-~~------~~~~~~d~~~~~~~-------~~--g~~~t~~e~~~ll~~aG-f 371 (390)
=.+-|.|||++++.-.-.++. +.... .. -...+.|+..-... .+ -..++.+|+++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 566789999999876655431 11110 00 00112222111000 00 12468999999999888 6
Q ss_pred CeeEEEe
Q 016366 372 KGINFAS 378 (390)
Q Consensus 372 ~~~~~~~ 378 (390)
.+.++..
T Consensus 303 ~I~~le~ 309 (386)
T PLN02668 303 AIDKLEV 309 (386)
T ss_pred EeeeeEE
Confidence 6655543
No 210
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.34 E-value=0.012 Score=55.72 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCC--CC-cEEEeccccccCChhH
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP--EG-DAILMKWILHCWDDDH 302 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p--~~-D~i~~~~vlh~~~d~~ 302 (390)
.++.++|||||++|.++..++++. .+++++|...+-+.....++|+.+.+|.+...| .. |.++|.-+.. +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 567899999999999999999984 589999987677777778999999999887443 33 9999887743 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEecccCC
Q 016366 303 CLRILKNCYKAVPGN-GKVIVMNSIVPE 329 (390)
Q Consensus 303 ~~~~L~~~~~~L~pg-G~lli~e~~~~~ 329 (390)
.++.+-+.++|..| -+-.|.+.-++-
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 26778888888877 344555555443
No 211
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.32 E-value=0.0011 Score=55.39 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCC-CCCCC-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~-~~p~~-D~ 288 (390)
..+..+|+|+|||.|.++..++.. .++.+++++|. +..++.+.++ .++++..+++.+ ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 27889999997 5555554431 456666666654 22333 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++.-|....+++ .+|+...+ |+-..++.-++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 887666666555 45665544 56555554443
No 212
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.25 E-value=0.00054 Score=66.83 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=68.0
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC--C-CcEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E-GDAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p--~-~D~i~~~~vlh~ 297 (390)
..+|||++||+|.++..++.+.+..+++++|+ +..++.++++ +++++..+|+...+. . .|+|++. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877567888998 7788777652 456788899865222 2 3999874 32
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
... ..+|..+.+.+++||.+++.
T Consensus 135 -Gs~--~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcCCCEEEEE
Confidence 222 26788877889999999987
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.24 E-value=0.00042 Score=59.18 Aligned_cols=92 Identities=12% Similarity=0.230 Sum_probs=69.6
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCCcEEEeccccccCCh
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDD 300 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d 300 (390)
..+.|+|.|+|-++...+++.. +++.++. |...+.+.++ .+++.+.||+.+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 6799999999999988777754 4455554 7666666653 679999999999 8866799987654333445
Q ss_pred hHHHHHHHHHHHhCCCCcEEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli 322 (390)
++-..+++.+.+.|+-++.++=
T Consensus 112 E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccccHHHHHHHHHhhcCCcccc
Confidence 5566899999999999988764
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.23 E-value=0.0012 Score=58.74 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=85.9
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc----hHHHhhCCC---CCCceEEECCCCC-C-CCC-CcEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL----PHVVQDAPS---YAGVEHVGGNMFE-S-VPE-GDAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~---~~rv~~~~gd~~~-~-~p~-~D~i~~~~vlh~ 297 (390)
+.+++|||.|.|.-+.-++-.+|+.+++.+|. -..++.+.+ .++++++++.+++ . .+. .|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999999999999999995 223444432 4789999998887 3 234 6999988753
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+ ...++.-+...+++||.++..-... ++. -..+.++....-|+++.++.
T Consensus 146 --~--L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 --S--LNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred --c--hHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2 3367888889999999876422110 000 13445666677788888887
Q ss_pred ecC
Q 016366 378 SCV 380 (390)
Q Consensus 378 ~~~ 380 (390)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 665
No 215
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.22 E-value=0.00076 Score=62.51 Aligned_cols=98 Identities=13% Similarity=0.255 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC----CCCceEEECCCCC-CCCC--
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~rv~~~~gd~~~-~~p~-- 285 (390)
..+..+++.+. ......|+|||+|.|.++..+++...++.++..| +..++..++ .++++++.+|+.+ +.+.
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 44567777776 6678999999999999999999998444444444 555554443 5899999999998 6554
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCC
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPG 316 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p 316 (390)
..+.+..++=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 33344444333333 3566666653333
No 216
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.023 Score=49.44 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=92.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-----hHHHhhCCCCCCceEEECCCCCCCC-----C-CcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP-----E-GDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~rv~~~~gd~~~~~p-----~-~D~i~~~~ 293 (390)
++++.+||-+|..+|....++..-.++-.+.+++. .+.++.+++++|+--+-+|+..|.. + .|+|+..-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 67889999999999999999998777555555554 3457778888999989999987532 2 28876432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
- .+.++.-+..++...|++||.++++=-...-+...++.. -..+-.+.|++.||++
T Consensus 154 -A---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~--------------------vf~~ev~kL~~~~f~i 209 (231)
T COG1889 154 -A---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE--------------------VFKDEVEKLEEGGFEI 209 (231)
T ss_pred -C---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH--------------------HHHHHHHHHHhcCcee
Confidence 1 234456678889999999997766433322211111000 0122234567889999
Q ss_pred eEEEecC---CceeEEEE
Q 016366 374 INFASCV---CNLYIMEF 388 (390)
Q Consensus 374 ~~~~~~~---~~~~vi~~ 388 (390)
.++..+. ..+.++.+
T Consensus 210 ~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 210 LEVVDLEPYEKDHALIVA 227 (231)
T ss_pred eEEeccCCcccceEEEEE
Confidence 9988775 34444443
No 217
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.19 E-value=0.0063 Score=53.96 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-h----HHHhhCCCCCCceEEECCCCCCCC-----CC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFESVP-----EG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~----~~~~~a~~~~rv~~~~gd~~~~~p-----~~-D~i~~~ 292 (390)
+.++.+||-+|..+|.+..++..-- |+-.+.+++. | +.++.|++++||--+-.|+..|.. +. |+|++.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6788999999999999999998843 4666666765 3 457778889999999999987521 22 887755
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecc--cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI--VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
-. -| ++.+-+..++...||+||.++++=-. .+....+ . -..++-.+.|++.|
T Consensus 151 Va---Qp-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~--------------------~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA---QP-DQARIAALNARHFLKPGGHLIISIKARSIDSTADP--E--------------------EVFAEEVKKLKEEG 204 (229)
T ss_dssp -S---ST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--H--------------------HHHHHHHHHHHCTT
T ss_pred CC---Ch-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--H--------------------HHHHHHHHHHHHcC
Confidence 32 23 44567888999999999998875332 1111100 0 00222355668889
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|++.+...+.
T Consensus 205 ~~~~e~i~Le 214 (229)
T PF01269_consen 205 FKPLEQITLE 214 (229)
T ss_dssp CEEEEEEE-T
T ss_pred CChheEeccC
Confidence 9999988886
No 218
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00075 Score=63.13 Aligned_cols=102 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-h---HHHhhCCCC---CCceEEECCCCC---CCCCCcEEEeccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-P---HVVQDAPSY---AGVEHVGGNMFE---SVPEGDAILMKWILH 296 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~---~~~~~a~~~---~rv~~~~gd~~~---~~p~~D~i~~~~vlh 296 (390)
+.+|||+|.|.|.-+-++-.-+|+++ ++.++. | .++....++ ........|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999998888888889875 455554 2 222222221 122223334432 566667666555555
Q ss_pred cC----ChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CW----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~----~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+ .+......++++...+.|||.|+|+|.-.+-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 43 3334555899999999999999999986543
No 219
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.17 E-value=0.0014 Score=57.14 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=64.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCe---------EEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE- 285 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~---------~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~- 285 (390)
+++...++|-=||+|.++++.+...+++. +++.|+ +.+++.++++ ..|.+...|+.+ +++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 67778999999999999999888777776 778887 7787776652 458899999988 6444
Q ss_pred C-cEEEeccccccC-Ch-----hHHHHHHHHHHHhCCCCcEEE
Q 016366 286 G-DAILMKWILHCW-DD-----DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 286 ~-D~i~~~~vlh~~-~d-----~~~~~~L~~~~~~L~pgG~ll 321 (390)
. |+|+++=-+..- .. .--.++++.+.+.+++...++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3 999988655432 21 113456788888898833333
No 220
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0034 Score=54.95 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=83.3
Q ss_pred ccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-----CCCceEEECCCCC---
Q 016366 210 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFE--- 281 (390)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----~~rv~~~~gd~~~--- 281 (390)
+.+..+....+.+. .++.|||.||-|-|.....+.++-|..+.++---|+|.++-+. ..+|....|-..+
T Consensus 86 WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 86 WETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred hhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhc
Confidence 33333344444443 6789999999999999999999999988877666888887765 3678877775544
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 282 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 282 ~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.+|+. |.|+..---.+ .++...+.+.+.+.|||+|++-..+..-.+
T Consensus 164 ~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred cccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 45554 88765533222 355778999999999999998877765433
No 221
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.13 E-value=0.014 Score=51.63 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=86.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCC-C-C-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-E-G-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p-~-~-D~i~~~~vl 295 (390)
...++.||||-+|.+...+.+.++..+++..|+ +..++.|.+ .++++...+|.+.++. . . |+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 445599999999999999999999999999997 555554443 3789999999987554 3 3 8887655
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+.......+|.+-.+-|+.--++++ .| +. ...++++||.+.+|.+..
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlIL----QP------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLIL----QP------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEE----CC------------------------CC---CHHHHHHHHHhCCceeee
Confidence 4556677888887777764344443 11 11 256678899999998876
Q ss_pred EEecCC
Q 016366 376 FASCVC 381 (390)
Q Consensus 376 ~~~~~~ 381 (390)
-.=+..
T Consensus 141 E~ileE 146 (226)
T COG2384 141 ETILEE 146 (226)
T ss_pred eeeecc
Confidence 655543
No 222
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.13 E-value=0.004 Score=51.40 Aligned_cols=95 Identities=19% Similarity=0.343 Sum_probs=63.6
Q ss_pred EEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC---CC---ceEEECCCCC---CCCC--C-cEEEeccccc
Q 016366 231 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFE---SVPE--G-DAILMKWILH 296 (390)
Q Consensus 231 iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~---~r---v~~~~gd~~~---~~p~--~-D~i~~~~vlh 296 (390)
++|+|||+|... .+....+. ..++++|. +.+++.++.. .. +.+..+|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44443333 36777887 5555553321 11 5778887764 4443 3 8884444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+.. ....+.++.+.++|+|.+++.+.....
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 458899999999999999988776543
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.09 E-value=0.0012 Score=62.13 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=70.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC-------------CCCceEEECCCCCCCCCC----
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESVPEG---- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-------------~~rv~~~~gd~~~~~p~~---- 286 (390)
++..++|-+|||.|..++++.+ +|+ -+++.+|+ |+|++.++. .+|++.+..|.++.+..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4677999999999999999875 674 35667776 999998883 278999999998844321
Q ss_pred cEEEeccccccCChhH--------HHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDH--------CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~--------~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|+. +++|+. ...+-+-+++.|+++|.+++...
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 66654 444443 34567778899999999887543
No 224
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.07 E-value=0.0027 Score=59.72 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=102.9
Q ss_pred hhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecchHHHhhCCC----C-----CCceEEEC
Q 016366 208 FNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS----Y-----AGVEHVGG 277 (390)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~----~-----~rv~~~~g 277 (390)
....++.-..+.+.+. .....|+-+|||-=.-+..+- .| .+++..+|+|++++.-++ . .+++++..
T Consensus 75 a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~ 150 (297)
T COG3315 75 AARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAV 150 (297)
T ss_pred HHHHHHHHHHHHHHHH--hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEec
Confidence 3333333334444444 336789999998655544443 34 588999999999886543 2 27999999
Q ss_pred CCCC-CCCC----------C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc--hH-Hhhhhh
Q 016366 278 NMFE-SVPE----------G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS--SA-ARETSL 342 (390)
Q Consensus 278 d~~~-~~p~----------~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~--~~-~~~~~~ 342 (390)
|+++ ++++ . -++++-.++.+++.+.+.++|++|....+||..++............. .. ......
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRG 230 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccc
Confidence 9995 5442 1 588999999999999999999999999999888775443211110000 00 000000
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 343 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 343 ~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
.++..... .-......++..++.+.||.....
T Consensus 231 ~~~~~~e~--~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 231 EDLDRGEL--VYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred cccccccc--eeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000 011235889999999999998766
No 225
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.92 E-value=0.0056 Score=61.23 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=68.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCC---CCCCC-cEEE--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG-DAIL-- 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~---~~p~~-D~i~-- 290 (390)
..++.+|||+++|.|.=+.+++....+ -.++..|+ +.-++..++ ..+|.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999987643 46788887 444433332 2567788888754 23333 8887
Q ss_pred --ec--cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEec
Q 016366 291 --MK--WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 291 --~~--~vlh-------~~~d~~~-------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+ .++. .|+.+++ .++|.++.+.|||||+|+-++=
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 33 1222 2332222 5799999999999998865443
No 226
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.013 Score=54.21 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHHHHHhhc---cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc------hHHHhhCCC----------------
Q 016366 214 AMERILEHYEG---FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS---------------- 268 (390)
Q Consensus 214 ~~~~l~~~~~~---~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl------~~~~~~a~~---------------- 268 (390)
.++.+...+|. .....+||-=|||.|+++..++...+.+.+-.+.- .-++...+.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~ 213 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNS 213 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccc
Confidence 34555555552 12346899999999999999998887766532220 111211110
Q ss_pred -----------------------CCCceEEECCCCC--CCCC---C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 016366 269 -----------------------YAGVEHVGGNMFE--SVPE---G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 269 -----------------------~~rv~~~~gd~~~--~~p~---~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 319 (390)
.+..+...|||.+ ..+. . |+|+.++.+- ....+.+.|+.|++.|+|||.
T Consensus 214 ~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 214 LSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcE
Confidence 0224446699987 3333 2 9887776553 245578999999999999998
Q ss_pred EEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 320 VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 320 lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
++=.-+..-.-.... +. ....+-+.+.+++..+.+.-||++++-..+.
T Consensus 292 WiNlGPLlYHF~d~~---------g~----~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 292 WINLGPLLYHFEDTH---------GV----ENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred EEeccceeeeccCCC---------CC----cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 886555532211000 00 0012456789999999999999998876554
No 227
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.91 E-value=0.0017 Score=63.05 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.1
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 281 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~ 281 (390)
.++||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998764 6777776 7788777652 478899888754
No 228
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.89 E-value=0.0014 Score=50.12 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=47.4
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
-+.|++.|... +++|+.+||+.+++ +...+.|.|+.|+..|++... ..++.|++++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHH
Confidence 35678888775 68999999999999 999999999999999999863 23567887763
No 229
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.021 Score=54.16 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEEC-CCCC-CCCCC--cEEEe
Q 016366 223 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFE-SVPEG--DAILM 291 (390)
Q Consensus 223 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~g-d~~~-~~p~~--D~i~~ 291 (390)
....++..|||==||||.++++...- ++++++.|+ ..|++-++.+ ....+..+ |+.. |+++. |.|++
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 33567789999999999999998765 577888888 7788887763 34445555 8888 88874 88876
Q ss_pred ccccccCC-------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHCWD-------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.--..--+ ++-..++|..+.+.|++||++++.-+
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 53332211 45577899999999999999998555
No 230
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.87 E-value=0.0022 Score=46.22 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHhChhHHHhhcCC--CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~--~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
...+-.|++.|...|+ +|+.|||+.+|+ +...+.|.|..|...|+|...+. .+..|+++.
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~-~~~~W~i~~ 66 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGG-TPPLWKLTD 66 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC-CCCceEeec
Confidence 3456678899988776 999999999999 89999999999999999986421 336777654
No 231
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0013 Score=53.99 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=49.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC-C--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~-~--D~i~~~~vlh 296 (390)
.+..++|+|||.|-++.... -+..-.++++|+ |..++.++++ -.+++.+.|+.++.+. + |..+.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 46789999999999983322 233446899998 9999998875 2578888888885443 3 7777665554
No 232
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.77 E-value=0.0017 Score=62.51 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
.+...++|+|||.|.....+..- .....+++|. +.-+.++.. ..+..++.+|+.+ ++++. |.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 34558999999999998877653 3456677775 333333222 2445568889988 77765 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
..|.++.. .++++++++++|||.+++.+.+...
T Consensus 188 ~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 188 VCHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred cccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 99999877 8899999999999999998877544
No 233
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.68 E-value=0.00083 Score=45.65 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=38.1
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+.|++.|..++ ++|+.|||+++|+ +...+.|+|..|+..|+|.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45778887754 6899999999999 99999999999999999985
No 234
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.67 E-value=0.0024 Score=51.16 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
...+|.--.++.|+..|...|+.++.||++.+++ .+..+.+.|+.|...|+|..........|++++.
T Consensus 9 ~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~ 76 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH 76 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence 4566777788999999976569999999999999 9999999999999999998643222334777653
No 235
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.64 E-value=0.0021 Score=56.73 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCCCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~~p~~--D~i~~~~vl 295 (390)
.++.+|+|.-||.|.++..+++..+..+++..|+ |..++..++ .++|..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777788999998 777666554 267889999988743332 877765422
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
. +..+|..+.+.+++||.+.
T Consensus 180 -----~-~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 -----S-SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----S-GGGGHHHHHHHEEEEEEEE
T ss_pred -----H-HHHHHHHHHHHhcCCcEEE
Confidence 1 2367888999999998764
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.029 Score=51.07 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=74.7
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-----hHHHhhCCCC---CCceEEECCCCC-CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSY---AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-----~~~~~~a~~~---~rv~~~~gd~~~-~~p 284 (390)
+.-|+..+. ..++.+|++-|.|+|.++.++++.- |.-+..-+|. ..+.+..+++ +++++..-|+-. -++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 345677777 7889999999999999999999965 6667777776 2344444443 678888888765 233
Q ss_pred --C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCc-EEEEEeccc
Q 016366 285 --E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNG-KVIVMNSIV 327 (390)
Q Consensus 285 --~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG-~lli~e~~~ 327 (390)
. +|.|++ ++|.++ ..+-.++++|+.+| +++...++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 388765 456555 55777788888765 777766664
No 237
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00087 Score=55.94 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred CcceEEEEcCCccHH-HHHHHhhCCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCCC---CCCC--cEEE
Q 016366 227 NVERLVDVGGGFGVT-LSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES---VPEG--DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~~---~p~~--D~i~ 290 (390)
.+.+||++|+|.-.+ +..++...|+..+-..|- ...++..++ ..++..+..+.... ..+. |+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 347899999996554 445555667777777774 444443332 23444444444432 1122 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+..++. =++....+.+.|...|+|-|+-++..+-
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 999984 3566678999999999999997765543
No 238
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.62 E-value=0.0015 Score=45.96 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=45.1
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..+|..-.++.|++.|...+|.|+.+||+.+|+ ++..+.+-|+.|...|+|+.
T Consensus 4 ~~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 345566678889999954479999999999999 99999999999999999985
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.012 Score=50.40 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=63.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEEC-CCCCC---------CCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFES---------VPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~g-d~~~~---------~p~ 285 (390)
++-+.+.-+++..+|||+||..|..+.-..++. |+-.+.++|+..... ...+.++++ |+.+| +|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 455555545778999999999999998888876 998999999743322 234555555 55443 232
Q ss_pred C--cEEEeccccccCC----------hhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 G--DAILMKWILHCWD----------DDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
- |+|++.. .+.-+ -+-|..+|.-....+.|+|.+++-
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 1 6665432 22211 122444555555667788877763
No 240
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.00079 Score=55.75 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=43.2
Q ss_pred ceEEECCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 272 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 272 v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+.+++-...+ .+... |+|++.+++.|+.-++....++.|++.|||||+|-|.-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4454443333 55543 999999999999999999999999999999999988543
No 241
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.56 E-value=0.03 Score=53.74 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=79.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh--------C--------CCCeEEEecchH-----HHh---hC----CCCCC--ceE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK--------Y--------PQIKAVNFDLPH-----VVQ---DA----PSYAG--VEH 274 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~Dl~~-----~~~---~a----~~~~r--v~~ 274 (390)
.+..-+|+|+||.+|..+..+... + |.+.++.-|+|. ... .. ....+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456679999999999887765432 2 345677778752 111 11 01122 456
Q ss_pred EECCCCC-CCCCC--cEEEeccccccCCh-------------------------hH------------HHHHHHHHHHhC
Q 016366 275 VGGNMFE-SVPEG--DAILMKWILHCWDD-------------------------DH------------CLRILKNCYKAV 314 (390)
Q Consensus 275 ~~gd~~~-~~p~~--D~i~~~~vlh~~~d-------------------------~~------------~~~~L~~~~~~L 314 (390)
++|.|.+ -+|.+ |++++++.||+++. +. ...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7899998 67876 99999999998751 11 223444445668
Q ss_pred CCCcEEEEEecccCCCCCcc------hHHhhhhhhhhhhhhhcC-------C--CcccCHHHHHHHHHHCC-CCeeEE
Q 016366 315 PGNGKVIVMNSIVPEIPEVS------SAARETSLLDVLLMTRDG-------G--GRERTKKEYTELAIAAG-FKGINF 376 (390)
Q Consensus 315 ~pgG~lli~e~~~~~~~~~~------~~~~~~~~~d~~~~~~~~-------~--g~~~t~~e~~~ll~~aG-f~~~~~ 376 (390)
+|||++++.-...++..... +..-...+.++.--.... + -..++.+|+++.+++.| |++.++
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 99999999887766521110 011111222221111000 0 12468999999999887 555443
No 242
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.52 E-value=0.001 Score=52.47 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=39.7
Q ss_pred EEEcCCccHHHHHHHhhCCCC---eEEEecc-h---HHHhhCCC---CCCceEEECCCCCC---CC-CC-cEEEeccccc
Q 016366 232 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFES---VP-EG-DAILMKWILH 296 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~---~~~~~Dl-~---~~~~~a~~---~~rv~~~~gd~~~~---~p-~~-D~i~~~~vlh 296 (390)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .. |+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876554 5788887 4 23333332 36799999998652 33 23 8887665 22
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..+.+..-|+.+.+.|+|||.+++.|
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 23556688999999999999888765
No 243
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.51 E-value=0.018 Score=60.91 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcc-CCcceEEEEcCCccHHHHHHHhhC------------------------------------------
Q 016366 213 IAMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSKY------------------------------------------ 249 (390)
Q Consensus 213 ~~~~~l~~~~~~~-~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------ 249 (390)
..+..++..-. | ++...++|-.||+|.++++.+...
T Consensus 176 tlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 34445554333 6 556899999999999999876521
Q ss_pred CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-C---CcEEEecccccc-C-ChhHHHHHHHHHHHhC
Q 016366 250 PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E---GDAILMKWILHC-W-DDDHCLRILKNCYKAV 314 (390)
Q Consensus 250 p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~---~D~i~~~~vlh~-~-~d~~~~~~L~~~~~~L 314 (390)
...+++++|+ +.+++.|+.+ ++|++..+|+.+ +.+ . .|+|+++=-+.. + ...+...+.+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 1236788998 8888887753 468999999987 433 1 399988844322 1 2233444544444444
Q ss_pred C---CCcEEEEEec
Q 016366 315 P---GNGKVIVMNS 325 (390)
Q Consensus 315 ~---pgG~lli~e~ 325 (390)
+ ||+++++...
T Consensus 335 k~~~~g~~~~llt~ 348 (702)
T PRK11783 335 KQQFGGWNAALFSS 348 (702)
T ss_pred HHhCCCCeEEEEeC
Confidence 4 8887776544
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.51 E-value=0.012 Score=50.88 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCCcEEEeccccc
Q 016366 223 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILH 296 (390)
Q Consensus 223 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~i~~~~vlh 296 (390)
|+.-..++|||+|.|+|..++.-++..- ..++..|+ |..+..++-+ -.|.+...|...+-+..|+++...+++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 3356789999999999999988777642 23344444 5555544432 247777777765333349999999998
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+.+..+ +++.-..+....|-.++|.|+-.+.
T Consensus 154 ~~~~a~--~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHTEAD--RLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred CchHHH--HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 766544 7777444444456677776665544
No 245
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.50 E-value=0.0031 Score=41.95 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|+..|.++|++|..|||+++|+ ....+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 45678899998888999999999999 9999999999999999984
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.044 Score=49.07 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=92.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCCCCCCceEEEC-CCCC----CCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFE----SVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~~rv~~~~g-d~~~----~~p~~-D 287 (390)
...++.+.-...+..+||||..||.|+..++++. .-+++++|. .......+..+||..+.. |+.. ++.+. |
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4556666623467899999999999999999874 345677775 444445566677766554 5543 12222 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE-EecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV-MNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli-~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
++++.-.+ .....+|-.+...++|++-++. +-+.+.-.+. ....-=...-+.....-..++.+++
T Consensus 147 ~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 147 LIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred eEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHHHH
Confidence 87766544 2245889999999999876554 3333322110 0000000000122334567889999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
++.||++..+.+.+
T Consensus 213 ~~~g~~~~gl~~Sp 226 (245)
T COG1189 213 KELGFQVKGLIKSP 226 (245)
T ss_pred hhcCcEEeeeEccC
Confidence 99999999987665
No 247
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.46 E-value=0.00093 Score=56.80 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=42.1
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCCC---CC--C-CcEEEecc
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFES---VP--E-GDAILMKW 293 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~~---~p--~-~D~i~~~~ 293 (390)
.|+|+-||.|..++.+++.+..+.++.+| |..++.++. .++|+++++|+++. +. . .|+|+++=
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 69999999999999999998765444444 767776664 26899999999872 22 1 38887653
No 248
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.46 E-value=0.0026 Score=61.58 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=41.6
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 281 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~ 281 (390)
.++||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998874 6888887 7888877753 468888888764
No 249
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.43 E-value=0.0016 Score=46.96 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..++..|-.+|+.|++|||+.+|+ +...+.+.|+-|...|+|...
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 45567777765589999999999999 999999999999999999874
No 250
>PHA00738 putative HTH transcription regulator
Probab=96.40 E-value=0.0047 Score=48.01 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=50.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
-.+..|++.|..++++++.+|++.+++ ..+.+++.|+.|...|+|..........|++++...
T Consensus 12 ptRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 12 ILRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCcc
Confidence 457788999988557999999999999 999999999999999999864322233577776544
No 251
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.22 E-value=0.012 Score=55.98 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=64.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-------CCCCeEEEecc-hHHHhhCCC--------CCCceEEECCCCC-CC-C--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SV-P-- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~Dl-~~~~~~a~~--------~~rv~~~~gd~~~-~~-p-- 284 (390)
.....+|+|-+||+|.++.++.+. .+..++.++|+ +.++..++- .....+..+|.+. +. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456678999999999999998874 47778888887 555554432 1334688899876 32 2
Q ss_pred CC-cEEEeccccccC--C------------------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 285 EG-DAILMKWILHCW--D------------------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~--~------------------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.. |+|+++=-+-.. . ..+ ..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEEec
Confidence 22 999876322211 1 111 2488999999999999776544
No 252
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.17 E-value=0.0047 Score=44.23 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=40.5
Q ss_pred hChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcc
Q 016366 47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPV 108 (390)
Q Consensus 47 lglfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~ 108 (390)
+-++..|. ..++.+..+||+.+++ +...+.+.++-|...|+|+...+..++ .|++|+.
T Consensus 6 ~~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 6 WQVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp HHHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred HHHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 33455555 4469999999999999 999999999999999999765433233 4777764
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.16 E-value=0.0061 Score=50.60 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCC
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMF 280 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~ 280 (390)
+++|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. ++++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999989999997 6676655542 45777765554
No 254
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.14 E-value=0.016 Score=53.71 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=57.7
Q ss_pred CcceEEEEcCCcc-HHHHHHHhh-CCCCeEEEecc-hHHHhhCCC--------CCCceEEECCCCC-C--CCCCcEEEec
Q 016366 227 NVERLVDVGGGFG-VTLSMITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-S--VPEGDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G-~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~--------~~rv~~~~gd~~~-~--~p~~D~i~~~ 292 (390)
.+.+|+=||||.= ..+..++++ .++..++++|+ |+.++.+++ ..+++|+++|..+ . +.+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4569999999966 555566654 36788888888 777777654 2679999999876 3 2234999888
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
..... ..++..++|.++.+.++||+.+++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 77653 3334569999999999999988863
No 255
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.12 E-value=0.0036 Score=41.47 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=38.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
++.|...|.+ |+.++.||++.+++ ++..+.+.|+.|...|+|.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5667888888 79999999999999 9999999999999999986
No 256
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.09 E-value=0.0068 Score=55.97 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=47.6
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+++|+.|||+++|+ +...+.|+|+.|+..|+|.++ ...++|++.+...
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 445666665568999999999999 999999999999999999864 3457899987543
No 257
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.05 E-value=0.022 Score=58.28 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=44.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC--------CeEEEecc-hHHHhhCCCC----C--CceEEECCCCCC-------CC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFES-------VP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~--------~~~~~~Dl-~~~~~~a~~~----~--rv~~~~gd~~~~-------~p 284 (390)
...+|+|.|||+|.++..++.+.+. ..++++|+ +..++.++.. . .++...+|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45677787 6666655431 2 355566665431 11
Q ss_pred CC-cEEEec
Q 016366 285 EG-DAILMK 292 (390)
Q Consensus 285 ~~-D~i~~~ 292 (390)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 22 999876
No 258
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=96.01 E-value=0.0098 Score=47.87 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccccC
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~~ 115 (390)
...++.++..|..+|++|..+||+.+++ +...+.+.++-|...|+|.+.....+. .+.+|+.+..+...
T Consensus 27 t~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 27 TEQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 3445567778877789999999999999 999999999999999999875332232 48888887766643
No 259
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=96.00 E-value=0.0046 Score=43.01 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=40.8
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
++.++..|..+|++|..+||+.+++ ++..+.++++-|+..|++.+...
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccC
Confidence 4556667777789999999999999 99999999999999999987543
No 260
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.98 E-value=0.0068 Score=42.54 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHhChhHHHhhcCC--CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc
Q 016366 45 IQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (390)
Q Consensus 45 ~~lglfd~L~~~g~--~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~ 96 (390)
.++.++-.|...++ +|+.+||+.+++ ++..+.+.++.|+..|+|.+..
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34556777777655 899999999999 9999999999999999998753
No 261
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=95.95 E-value=0.0083 Score=54.99 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=47.8
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+ ++++.|||+++|+ ++..+.|+|..|+..|++..+ ..+++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 56788888742 4679999999999 999999999999999999974 3356899987543
No 262
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=95.89 E-value=0.039 Score=46.07 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=49.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++-.|..++++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ ..+|+.+..+.
T Consensus 42 q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 3455667766678999999999999 9999999999999999998754333333 55666665544
No 263
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.75 E-value=0.063 Score=47.82 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=70.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhh-------CCCCCCceEEECCCCCCCC----C---C--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQD-------APSYAGVEHVGGNMFESVP----E---G-- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~-------a~~~~rv~~~~gd~~~~~p----~---~-- 286 (390)
.-++++++|||.=+|..+..++.+.|. -+++.+|+ +...+. |.-...|+++.++..+.++ . +
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 456799999999999999999998875 56777776 434333 3334789999998876322 2 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|.++... |.+. ....+.++.+.+|+||.|++-....+
T Consensus 151 DfaFvDa----dK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 151 DFAFVDA----DKDN-YSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred eEEEEcc----chHH-HHHHHHHHHhhcccccEEEEeccccC
Confidence 7766432 4444 44899999999999998765443433
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.75 E-value=0.043 Score=48.42 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred CcceEEEEcCCccHHHHHHH---hhC-CCCeEEEecc--hHHHhhCCCC----CCceEEECCCCCC-----CC----CC-
Q 016366 227 NVERLVDVGGGFGVTLSMIT---SKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFES-----VP----EG- 286 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~---~~~-p~~~~~~~Dl--~~~~~~a~~~----~rv~~~~gd~~~~-----~p----~~- 286 (390)
++..|+++|.-.|..+..++ +.+ ++.+++++|+ ...-..+.+. +||++++||-.++ +. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 46899999998887766554 444 7788888887 2332333333 8999999998653 11 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
-++++-..=|.+.. +.+.|+.....++||++++|-|....
T Consensus 112 ~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS----SS--HHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEEecccc
Confidence 33445555555443 56889999999999999998777643
No 265
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.1 Score=48.59 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=98.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecchHHHhhCCC----C------------------------CCceE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS----Y------------------------AGVEH 274 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl~~~~~~a~~----~------------------------~rv~~ 274 (390)
.+...+|+.+|||.=.....+...+ ++++++.+|.|.++++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999987 8889999998877654221 0 23445
Q ss_pred EECCCCC--CC----CC-----C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhh
Q 016366 275 VGGNMFE--SV----PE-----G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 341 (390)
Q Consensus 275 ~~gd~~~--~~----p~-----~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 341 (390)
+..|..+ .+ .. . -+++.-=+|-++++++...+++.+.+..+ .+.+++.|.+.+.++-.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg-------- 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFG-------- 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHH--------
Confidence 5555553 11 11 1 35566678888999999999999999885 56678899987665321
Q ss_pred hhhhhhhhhcC--------CCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 342 LLDVLLMTRDG--------GGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 342 ~~d~~~~~~~~--------~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
-.|..++. --...|.+..++-+.++||+-+.+..+
T Consensus 236 ---~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 ---KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 12222110 112357888888999999998877554
No 266
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.72 E-value=0.0058 Score=45.58 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=47.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc----ceecCcccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSK 110 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~----~y~~t~~s~ 110 (390)
++++|...|...+.++..+|.+.+++ +...|.+.|+.|...|+|.......++ .|++|+.+.
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 46788888887679999999999999 999999999999999999864332222 277777665
No 267
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.68 E-value=0.057 Score=47.09 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC---------CCceEEECCCCC-CC----C------C
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFE-SV----P------E 285 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~---------~rv~~~~gd~~~-~~----p------~ 285 (390)
++...|+.+|||-=.....+....++++++.+|+|++++.-++. .+++++..|+.+ .+ . .
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 34559999999999999999988889999999999988765542 236789999986 21 1 1
Q ss_pred C-cEEEeccccccCChhHHHHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNC 310 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~ 310 (390)
. -++++-.++.+++++++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 2 688888999999999999998876
No 268
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.64 E-value=0.014 Score=54.50 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=47.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|.+. +++|+.|||+++|+ +..-+.|+|..|+..|+|..+ .+.++|++.+...
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHHH
Confidence 4566666653 48999999999999 999999999999999999864 3467899986543
No 269
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.63 E-value=0.014 Score=54.34 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=47.3
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|..+ +++|+.|||+++|+ ++..+.|+|..|+..|+|..+ ...++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 4567777654 47999999999999 999999999999999999864 346789988644
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.63 E-value=0.016 Score=52.45 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~--D~i~~~~vlh~ 297 (390)
..+.+|+|||||.-=++.-.....|+.+++++|+ ...++..... .+.+....|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4578999999999999988888889999999998 6666665542 56777788998865543 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+..+.. ..--++-+.++ .-.++|+.+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 765543 23233334443 23556655553
No 271
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.55 E-value=0.014 Score=45.50 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 259 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl 259 (390)
+.+.-+.+.+. ......++|||||+|.+.--|.+. +.++.++|.
T Consensus 45 yLi~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 45 YLIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 33333334443 345678999999999999888876 456888883
No 272
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.50 E-value=0.014 Score=53.55 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=47.2
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ ++..+.|+|..|+..|+|.. ++++|++.+...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~----~~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS----DGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEecHHHH
Confidence 5577777653 48999999999999 99999999999999999984 457899987543
No 273
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.48 E-value=0.023 Score=42.62 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++|.++||+++++ ++..+++++..|...|+|.... ..++.|.+++..+
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-CC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecCCHH
Confidence 6999999999999 9999999999999999997542 2457788876443
No 274
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.48 E-value=0.0071 Score=44.75 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=43.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
|+..+.. |+.+..+|+..+++ +...+.++|+.|...|+|. ..++.|++|+.+..+..
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~----~~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIK----KKDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEE----EETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCee----CCCCEEEECccHHHHHH
Confidence 3444543 69999999999999 9999999999999999997 46789999999886663
No 275
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.42 E-value=0.016 Score=53.75 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|..++ ++|..|||+++|+ +...+.|+|+.|+..|+|.++ .+++.|++++....+.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~--~~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS--ASDDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--cCCCcEEEcHHHHHHH
Confidence 45667776543 6999999999999 999999999999999999864 3467899987554333
No 276
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.40 E-value=0.023 Score=53.02 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=71.2
Q ss_pred cceEEEEcCCccHHHHHHHhhC--------------------CCCeEEEecc---hHHHhhCCC----C-----------
Q 016366 228 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 269 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~Dl---~~~~~~a~~----~----------- 269 (390)
..+||-||||.|.-..+++..+ +.++++.+|+ ..+++.... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999997766666554 2257888887 456654322 0
Q ss_pred --------CCceEEECCCCC-CCC-------C-C-cEEEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 270 --------AGVEHVGGNMFE-SVP-------E-G-DAILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 270 --------~rv~~~~gd~~~-~~p-------~-~-D~i~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-+++|.+.|+.+ ..+ . . ++|.+.++++.+ +-.+-.++|.++-..++||..|+|+|.-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 147899999987 321 1 2 888777776653 3455678999999999999999998864
No 277
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.34 E-value=0.041 Score=39.05 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++|..+||+.+|+ .+..+.+.|+.|...|+|... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 58999999999999 999999999999999999852 236777654
No 278
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.32 E-value=0.028 Score=48.09 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|+++||+++++ ++..+.++|..|...|+|...+ ..+|.|.+....
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r-G~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR-GPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCCeeccCCH
Confidence 48999999999999 9999999999999999998632 345678877643
No 279
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.29 E-value=0.029 Score=43.23 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
.++.++..|..+|+.|..+||+.+++ ++..+.+.++-|+..|+|.......+ ..|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 35667888877678999999999999 99999999999999999986321111 1355555554433
No 280
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.28 E-value=0.026 Score=45.46 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=39.8
Q ss_pred HhChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+|.+|- .+||.|+++||+.++. +...+.+-|+-|...|+|.+.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeee
Confidence 445566665 5689999999999999 999999999999999999874
No 281
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.27 E-value=0.072 Score=51.82 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=67.9
Q ss_pred ceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C-CcEEEeccccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILMKWILH 296 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~-~D~i~~~~vlh 296 (390)
.+|||+-||+|..+.+++.+.++ -+++..|+ |..++.++++ .+++++.+|+..-+. . .|+|.+.= ++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998654 46888888 7777776652 357888898876322 2 39987754 32
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+. .+|..+.+.+++||.|++.-
T Consensus 125 -s~~----~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 -TPA----PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CcH----HHHHHHHHhcccCCEEEEEe
Confidence 222 67889999999999999873
No 282
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.25 E-value=0.016 Score=41.90 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=36.0
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|-+.|..+|.+|..+||.++++ ++..++.+|+.|+..|.|.+
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~ 46 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRK 46 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 5677888789999999999999 99999999999999999985
No 283
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.23 E-value=0.022 Score=37.42 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
++|..+||+.+++ .+..+.+.|+.|...|++.. ..+.|..
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~----~~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR----EGGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----eCCEEEE
Confidence 7899999999999 99999999999999999984 3466654
No 284
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.17 E-value=0.13 Score=49.16 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=75.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC---CCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP---EGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p---~~D~i~~~~v 294 (390)
..+.+|||.=+|.|-++..+++...- +++.+|+ |..++..+++ ++|+.+.||..+-.+ .+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35789999999999999999987643 3888888 8887766652 458899999988333 3599888765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
- + ..+++..+.+.+++||.+...+.+..+
T Consensus 266 ~----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K----S--AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred C----c--chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 3 1 237788888899999999998888654
No 285
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=95.10 E-value=0.033 Score=38.55 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=39.5
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|.+.|..+|.+|+++||+.+++ .+.-++|=|..|...|++.+
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r 46 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKR 46 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 36778888789999999999999 99999999999999999986
No 286
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.06 E-value=0.031 Score=49.65 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=48.3
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-c----ceecCccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE-R----LYALNPVSKY 111 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~-~----~y~~t~~s~~ 111 (390)
-.|...|.++||+|+.|||+++|+ ++..+++.|+.|++.|+|+......+ | .|++|..+..
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 346667777789999999999999 99999999999999999976422111 1 3888887664
No 287
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.03 E-value=0.02 Score=49.90 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=62.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC------CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~------p~~-D~i~~ 291 (390)
.+.++||+=||+|.++.+.+.+.- .+++.+|. +..++..+++ ++++.+..|.+..+ ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999999998863 46777776 5555555542 46889999976522 223 99988
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEEEecc
Q 016366 292 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~ 326 (390)
.=-...... ..++|..+. ..|+++|.+++ |.-
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~-E~~ 154 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNEDGLIII-EHS 154 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence 755433211 346777776 78888886554 443
No 288
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.00 E-value=0.04 Score=45.53 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|+++||+.+++ ++..++++|+.|...|+|...+ ..+|.|.++....
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~-G~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR-GPGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe-CCCCCEeccCCHH
Confidence 48999999999999 9999999999999999997532 2456788776433
No 289
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.00 E-value=0.061 Score=50.59 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 281 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~ 281 (390)
..++++.+. ..++..++|.=+|.|..+..++++.|+.+++++|. +.+++.+++. .|++++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777776 56677999999999999999999988789999998 8888877652 478888888764
No 290
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.95 E-value=0.03 Score=49.37 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=44.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE 281 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~ 281 (390)
....|+|.-||.|..++.++.++|.+-.+.+| |--+..|+.+ +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHH
Confidence 56789999999999999999999876555555 7667776653 699999999986
No 291
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.93 E-value=0.12 Score=43.61 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
+.+.++.+.........-..+. -|...+...++.+..+||+.+++ ++..+.++++.|...|+|... ..
T Consensus 19 ~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~ 86 (152)
T PRK11050 19 HVEGFRQVREAHRRELIEDYVE-----LIADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PY 86 (152)
T ss_pred hHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cC
Confidence 3345555554444333333332 35556665568999999999999 999999999999999999862 33
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
..+++|+.+..+.
T Consensus 87 ~~v~LT~~G~~l~ 99 (152)
T PRK11050 87 RGVFLTPEGEKLA 99 (152)
T ss_pred CceEECchHHHHH
Confidence 4567777665443
No 292
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.91 E-value=0.024 Score=39.81 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=36.8
Q ss_pred ChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|.+.|.. ++|++..|||+.+|+ +....+++|..|...|.|..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 46777776 579999999999999 99999999999999999985
No 293
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=94.87 E-value=0.033 Score=44.13 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=49.4
Q ss_pred HHHHhChhHHHh----hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 43 AAIQLGVFEIIA----KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~----~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
...++.++..|. .+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.+ +.+|+.+..+.
T Consensus 24 s~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 24 SLEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CHHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 344555666666 3368999999999999 9999999999999999998754433333 45666555443
No 294
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.86 E-value=0.073 Score=51.86 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=72.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC----CC---cEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP----EG---DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p----~~---D~i~ 290 (390)
.+.+|||+=|=||.++...+... ..++|.+|+ ..+++.|+++ .+++++++|.++.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 47899999999999999988764 237888888 7788887763 468999999987332 22 9997
Q ss_pred ecc------ccccCC-hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKW------ILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~------vlh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.= -=.-|. ..+-.+++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 641 111111 233557899999999999999886654
No 295
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.85 E-value=0.036 Score=46.17 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=45.4
Q ss_pred HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 52 ~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
.+..+|+.++.+||+.+++ .+..+.+.++.|...|+|.. ...+.|++|+.+..+.
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~---~~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIY---EKYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEE---ecCceEEECHHHHHHH
Confidence 3444578999999999999 99999999999999999985 2346788998876543
No 296
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=94.58 E-value=0.064 Score=37.33 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=36.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|+..|. .++.|..+|++.+++ +...+.+.|+.|...|++...
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 455565 369999999999999 899999999999999999853
No 297
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.57 E-value=0.068 Score=50.30 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=48.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 280 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~ 280 (390)
..++++.+. ..+...++|.=-|.|.++.++++++|+.+++++|. |.+++.++++ +|+.++.++|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 67778999999999999999999999999999998 8888877653 57777777654
No 298
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.50 E-value=0.051 Score=48.28 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=48.9
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc-CCCc----ceecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGER----LYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~-~~~~----~y~~t~~s~~l~ 113 (390)
..|+..|...|++|..+||+++++ ++..+.+.|+.|...|+|.+... ...+ .|++|+.+....
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 457777876679999999999999 99999999999999999986411 0112 267887766544
No 299
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.32 E-value=0.065 Score=35.80 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=37.2
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+++.|..++++|+.+|++.+++ .+..+.+.|+.|...|++..
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4556665568999999999999 99999999999999999985
No 300
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.30 E-value=0.075 Score=43.52 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|.++||+.+++ ++..+.++|+.|+..|+|.... ..++.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999997532 2345787765443
No 301
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=94.20 E-value=0.071 Score=47.34 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.++.++..|.++|+.+..+||+++++ ++..+.+.|..|...|++.+... ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-CccEEEeCCC
Confidence 34567777777678999999999999 99999999999999999987421 3456777764
No 302
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.18 E-value=0.4 Score=46.30 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=71.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC---------------------------------------eEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI---------------------------------------KAV 255 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 255 (390)
+..++.. .+|.+...++|==||+|.++++.+...+++ ..+
T Consensus 180 AaAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 3344433 347777899999999999999988877542 256
Q ss_pred Eecc-hHHHhhCCCC-------CCceEEECCCCC-CCC-C-CcEEEecccccc-CChh-HHH----HHHHHHHHhCCCCc
Q 016366 256 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E-GDAILMKWILHC-WDDD-HCL----RILKNCYKAVPGNG 318 (390)
Q Consensus 256 ~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p-~-~D~i~~~~vlh~-~~d~-~~~----~~L~~~~~~L~pgG 318 (390)
++|+ +.+++.|+.+ +.|+|.++|+.. .-| . .|+|+++=-... +.++ .+. .+.+.+++.++.-+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 8887 8888888763 569999999976 333 3 399998744332 2222 122 34445556666556
Q ss_pred EEEEEe
Q 016366 319 KVIVMN 324 (390)
Q Consensus 319 ~lli~e 324 (390)
+.+++.
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 666643
No 303
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.051 Score=53.87 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=64.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p- 284 (390)
....+.+. ..+..+++|+=||.|.++..++++.. +++++++ +++++.|+++ ++++|..+|.++- ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34445554 55678999999999999999997654 4566665 7777777652 6799999998872 21
Q ss_pred -CC-cEEEeccccccCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 016366 285 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 -~~-D~i~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~ 323 (390)
.. |.|+..= |..=+. .+++.+. .++|...++|+
T Consensus 360 ~~~~d~VvvDP-----PR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVDP-----PRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEECC-----CCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 12 7776532 211122 4455544 45566767764
No 304
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.04 E-value=0.11 Score=46.08 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=69.6
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhCCC------C---eEEEecchHHHhhCCCCCCceEEECCCCCC--------
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------I---KAVNFDLPHVVQDAPSYAGVEHVGGNMFES-------- 282 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~------~---~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~-------- 282 (390)
+.+.-+.+..|++|+....|+.+.-+.++.-. - +++.+|+..|... +.|.-+++|+.++
T Consensus 34 eef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 34 EEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHH
Confidence 33433567789999999999998888776421 1 2789998777653 5688899999763
Q ss_pred -CC--CCcEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCcEEE
Q 016366 283 -VP--EGDAILMKW-----ILHCWDD----DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 283 -~p--~~D~i~~~~-----vlh~~~d----~~~~~~L~~~~~~L~pgG~ll 321 (390)
+. .+|+|+|.. -+|++.+ +-....|.-...+|+|||.++
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 22 239999875 4776642 224456777788999999977
No 305
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=93.98 E-value=0.058 Score=45.42 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|+++||++.++ ++..|.++|..|...|+|+..+ ..+|.|++++...
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~~ 72 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARPPE 72 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCChH
Confidence 7899999999999 9999999999999999998643 3467888887544
No 306
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=93.91 E-value=0.092 Score=37.74 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=42.0
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
..|+..+... +.+..+|++.+++ +...+.+.|+.|.+.|++..........|+.++
T Consensus 10 ~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 10 LRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 3456666664 5999999999999 999999999999999999863221223455554
No 307
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=93.66 E-value=0.076 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=35.2
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHH
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~ 85 (390)
-.+|.+|++.|-||. .. ..|.+|||+.+|+ .+..+...||-
T Consensus 6 ~e~L~~A~~~GYfd~-PR--~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDV-PR--RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCC-CC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 468999999999998 43 6899999999999 88887777774
No 308
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=93.61 E-value=0.13 Score=44.48 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=40.6
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|++.|..+|++|.++||..+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 448899988789999999999999 99999999999999999984
No 309
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.60 E-value=0.1 Score=44.08 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++|+.+||++.++ ++..|+++|..|...|+|.... ...|.|+++....
T Consensus 24 ~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~p~ 71 (153)
T PRK11920 24 LSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGRPAA 71 (153)
T ss_pred cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecCCHH
Confidence 7899999999999 9999999999999999998643 3457788876433
No 310
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=93.56 E-value=0.11 Score=41.85 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+|+.++++.. --.+.++..|+..+|.|+.|+|++.|- +...+.|-|+.|...|++..+
T Consensus 53 ~Sye~la~vLs----------p~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 53 TSYEDLARVLS----------PRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred ccHHHHHHHhC----------hhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 55666555443 345677888888789999999999999 999999999999999999863
No 311
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=93.51 E-value=0.084 Score=37.56 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=30.5
Q ss_pred hhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 54 AKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 54 ~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++| |.|+.|||+.+|+. .+..+.+.|+.|...|++.+
T Consensus 20 ~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 20 EENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp HHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccC
Confidence 3346 88999999999992 48899999999999999986
No 312
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.35 Score=40.02 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~ 286 (390)
+.+++.++ .++.++.+|+|.|.|....+.++.. -...+++++ |-.+...+- ..+.+|..-|+++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 3455899999999999988888765 334566666 666655442 1568888889888 77665
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.++++. .+.-...+-.+++.-|+.|.+++-.-+-+|.
T Consensus 140 ~~vviFg------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333321 1222234455666778888888876665554
No 313
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.42 E-value=0.11 Score=47.55 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=59.5
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccC
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 115 (390)
-++....+.+|+=.|.+ ||.|.+||-..+++ .+..+..-++-|...|+|.+ +++.|++|..+..++..
T Consensus 8 ~if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHHH
Confidence 35566778888889998 79999999999999 99999999999999999994 68999999999877643
No 314
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.38 E-value=0.47 Score=39.40 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=46.7
Q ss_pred hhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCcccccccc
Q 016366 49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~~ 114 (390)
++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.....+.+ ..+|+.+..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 45566543 36899999999999 9999999999999999998754323332 566776665553
No 315
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.36 E-value=2.1 Score=38.77 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=53.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCC---C--cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE---G--DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~---~--D~i~~~~vl 295 (390)
.+++||=||=+. ..+.+++..++..+++++|+ +..++..++. -.|+.+..|+..++|. + |+++..=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468899999444 45555555566678888888 6676655531 2499999999998885 2 99887642
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++.+-..-++.+..++||..|.....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 34466778999999999976644333
No 316
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.33 E-value=0.12 Score=43.73 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+.....|+.+..+||+.+++ .++.+..+++-|...|+|+. ...+.+.+|+.+.....
T Consensus 17 ~l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~---~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 17 ELLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEY---EPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEE---ecCCCeEEChhhHHHHH
Confidence 33334469999999999999 99999999999999999997 35678899988875553
No 317
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.29 E-value=0.1 Score=42.73 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++.|+.|||+++++ ++..+.+.|+.|...|++.... ...+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhhcC
Confidence 48999999999999 9999999999999999997521 1345677754
No 318
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.25 E-value=0.096 Score=51.96 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES 282 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~ 282 (390)
++....++|+-||||.++.++++.... ++++++ |+.++.|+.+ .+.+|++|-.++.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~--ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKR--VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccccc--eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 667789999999999999999998754 555554 8888877753 6799999965553
No 319
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.20 E-value=0.53 Score=42.91 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC------------CCceEEECCCCCC------CCC-Cc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY------------AGVEHVGGNMFES------VPE-GD 287 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~------------~rv~~~~gd~~~~------~p~-~D 287 (390)
...+||++|+|+|..+...+. .....++.-|++.+++..... ..|.....+...+ .|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999966555554 346678888876655543321 1344444333321 233 49
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|+.+.+++.-.. ...++..++..|..++.+++......
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999876433 34778888888888886666555544
No 320
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.19 E-value=0.055 Score=52.38 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMF 280 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~ 280 (390)
+...+++.++ ..+. ++||+=||.|.++..+++... ++++++. +.+++.|++ .++++|+.++..
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 3345555555 3333 799999999999999998875 4666666 788888775 267999987653
No 321
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.19 E-value=0.13 Score=42.87 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++++.+.++.+ ..+.+.|..+||+.+|+ ++..+++.|..|...|+|.... ..++.|.+..
T Consensus 9 YAl~~~i~la~~---~~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PEGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CCCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeecC
Confidence 455555555433 22127899999999999 9999999999999999997643 2345677764
No 322
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=93.14 E-value=0.15 Score=36.64 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=44.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
++.++..|.+ ++.+..+||+++++ ....+.+.++.|.+.|+.... . +..|.+.+..
T Consensus 2 ~~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEecCcc
Confidence 4567788886 58999999999999 999999999999999996543 2 4566665433
No 323
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.11 E-value=0.24 Score=47.66 Aligned_cols=108 Identities=19% Similarity=0.397 Sum_probs=73.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc---hHHHhhCC-------------CCCCceEEECCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDAP-------------SYAGVEHVGGNMF 280 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl---~~~~~~a~-------------~~~rv~~~~gd~~ 280 (390)
.+.+.+. ........|+|+|.|.....++.......-+++.+ |.-+.... +...++++.++|.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3444444 56778999999999999988887665555555554 32222211 1245889999998
Q ss_pred CC------CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 281 ES------VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 281 ~~------~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.+ .+++++|+.+++. |+++...+ +.++..-+++|-+++-.+++.+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEeccccccc
Confidence 73 2345999999987 44444333 4588899999999998888776
No 324
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.08 E-value=0.37 Score=41.90 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=63.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEECCCCCC---CC-C--CcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES---VP-E--GDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~~---~p-~--~D~i~~~ 292 (390)
.+.++||+=+|+|.++.+.+.++- .+++.+|. ..++...++ ..+++++..|...- .+ . .|+|++.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999999863 45666665 444444443 36788888888741 11 2 3999988
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 293 WILHC-WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 293 ~vlh~-~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
=-++. ..+....-++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 77662 222221222222457799999877633
No 325
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.01 E-value=0.63 Score=46.12 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred ceEEEEcCCccHHHHHHHhh-CCCCeEEEecchHHHhh-----CCCCCCceEEECCCCC-CCCCC--cEEEeccccccCC
Q 016366 229 ERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQD-----APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD 299 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~-----a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 299 (390)
-+++-+|||.-.+...+-+. +++++.+.++ +-+++. +++++...+...|+.. .++.. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 38999999999888887764 5666555555 333332 2445678899999988 77764 9999999998753
Q ss_pred -hh-------HHHHHHHHHHHhCCCCcEEEEEecc--cCCC
Q 016366 300 -DD-------HCLRILKNCYKAVPGNGKVIVMNSI--VPEI 330 (390)
Q Consensus 300 -d~-------~~~~~L~~~~~~L~pgG~lli~e~~--~~~~ 330 (390)
++ .+...+..+.+.|+|||+++.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 22 2445689999999999999888874 4443
No 326
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=92.82 E-value=0.13 Score=40.44 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=41.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+..|+..|..+++.|..+||+++|+ ++..+.+.++.|...|++.
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCee
Confidence 46778888988779999999999999 9999999999999999997
No 327
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=92.65 E-value=0.17 Score=44.10 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=49.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+.++..|..++++|..+||+.+++ +...+.++++-|...|+|.+....++.+ ..+|+.+..+.
T Consensus 48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456677776679999999999999 8899999999999999999754333333 55677666554
No 328
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.55 E-value=0.4 Score=47.70 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=80.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe---cchHHHhhCCCCCCceEEECCCCCC---CCCC-cEEEecccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DLPHVVQDAPSYAGVEHVGGNMFES---VPEG-DAILMKWILHC 297 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~---Dl~~~~~~a~~~~rv~~~~gd~~~~---~p~~-D~i~~~~vlh~ 297 (390)
......|+|..+|.|.|+.+|... | +-+..+ +-+..+...-++.-|- +-.|.-++ .|.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 455678999999999999999754 2 322111 1122333322222122 12233333 4444 99988888876
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+. .-+...+|-++-|.|+|||.++|-|..- ...++++++++-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEEEE
Confidence 54 3335689999999999999999866541 1344566777777775433
Q ss_pred EecCC---ceeEEEEeC
Q 016366 377 ASCVC---NLYIMEFFK 390 (390)
Q Consensus 377 ~~~~~---~~~vi~~~k 390 (390)
....+ ...|+.|.|
T Consensus 490 d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 490 DTEDGPDGPEKILICQK 506 (506)
T ss_pred ecCCCCCCCceEEEEEC
Confidence 33332 355777765
No 329
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=92.47 E-value=0.15 Score=45.65 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
..+.+...+|..+||+.+++ ++..+.|.|+.|...|+|.+.....+..+++|+.+..+.
T Consensus 14 g~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll 72 (217)
T PRK14165 14 GAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVL 72 (217)
T ss_pred hccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence 34444346899999999999 999999999999999999875333345677787776555
No 330
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.47 E-value=0.28 Score=45.44 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=67.8
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCCC--c
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG--D 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~~--D 287 (390)
..++.++|-||+|.|.+.+..++. +.+. +..+|+ ..+++..++ .++|.++.||.+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998887 5543 455555 455554443 2789999998865 34443 8
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 288 AILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 288 ~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+|+.-..=-..|.. --..++.-+.++|||||++++....
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 88765421111211 1234667788999999999886644
No 331
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.43 E-value=0.17 Score=35.34 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 55 ~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.++++..+||+++++ .++.....++-|...|+|+..
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 3359999999999999 999999999999999999863
No 332
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=92.36 E-value=0.18 Score=47.06 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC----CC--cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP----EG--DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p----~~--D~i~~ 291 (390)
...+|||+=|=+|.++...+.. ...+++.+|. ..+++.++++ .+++++++|+++.+. .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987654 3457899998 6778777652 579999999986322 12 99976
Q ss_pred cc---ccccCC-hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KW---ILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~---vlh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.= .=..+. ..+-.++++.+.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 100111 23356789999999999999876544
No 333
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=92.30 E-value=0.22 Score=44.13 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-.-++|...++..|++.|...||+.+.|||+++|+ +..-+..-+..|+..|++..
T Consensus 15 dv~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT 69 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRT 69 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceee
Confidence 34578889999999999998789999999999999 88889999999999999975
No 334
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.28 E-value=0.059 Score=42.31 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=43.5
Q ss_pred cEEEecccccc----CChhHHHHHHHHHHHhCCCCcEEEEEecccC-CCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHC----WDDDHCLRILKNCYKAVPGNGKVIVMNSIVP-EIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~----~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|+|+|.+|.-+ +.|+-...+++++++.|+|||.+++ |+..= ...... .....+.-++ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 78888877543 4688899999999999999998764 54310 000000 0000000011 111234567
Q ss_pred HHHHHHH--CCCCeeEEEecC
Q 016366 362 YTELAIA--AGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~--aGf~~~~~~~~~ 380 (390)
+.++|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 699988866554
No 335
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=92.26 E-value=0.11 Score=39.50 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=45.8
Q ss_pred hhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|...|+|.+...... -.|++|+.+..+.
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4555666 799999999999 89 99999999999999999986432111 2499999887766
No 336
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.20 E-value=2.7 Score=35.94 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=74.8
Q ss_pred EEcCCccHHHHHHHhhCC---CCeEEEecc-hHHHhhCCC---------CCCceEEE-CCCCC--CCC---CC--cEEEe
Q 016366 233 DVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEHVG-GNMFE--SVP---EG--DAILM 291 (390)
Q Consensus 233 DiG~G~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~-gd~~~--~~p---~~--D~i~~ 291 (390)
=||=|.=+|+..|++.++ ++.++.+|- ..+.+.... ..+++++. .|+.+ ... .. |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788899999999987 455677775 333333221 13444433 36654 222 22 99988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 292 KWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 292 ~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++---.. ...-...+|+.+.+.|+++|.+.|.-..-. .++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCccc
Confidence 8764331 122356789999999999999887332211 11122
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.++.+++||...+..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 23577788999998887765
No 337
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=92.16 E-value=0.19 Score=40.04 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccccC
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~~ 115 (390)
....+..++..|...++.+..+||+++++ ++..+.++++-|+..|+|.+.....++ .+.+|+.+..+...
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 34556667777777655555999999999 999999999999999999986543333 36777777655543
No 338
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=91.91 E-value=0.19 Score=34.17 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=33.0
Q ss_pred ChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 48 glfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
.|+..| ...+++|+++||+.+++ ..+.+.+-+..|...|+.
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~~ 45 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWGIP 45 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCe
Confidence 356667 33357999999999999 999999999999999933
No 339
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.79 E-value=0.26 Score=36.11 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=38.4
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|=|.|..+|-.++.+||..++. +++.++.+|..|+..|-|++
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkver 48 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVR 48 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 3467888889999999999999 99999999999999999985
No 340
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=91.52 E-value=0.28 Score=35.03 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=41.8
Q ss_pred hhHHHhhc-CCCCHHHHHHHhccCCCCC--CCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 49 VFEIIAKA-GELSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 49 lfd~L~~~-g~~t~~eLa~~~~~~~~~~--~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
|++.|.+. +|++..+|++.+... ..+ +..++|.|++|...|++.. .....+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence 56677665 499999999999762 223 4789999999999998774 2233456776543
No 341
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.20 E-value=0.96 Score=44.16 Aligned_cols=109 Identities=22% Similarity=0.341 Sum_probs=61.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccH----HHHHHHhhC---CCCeEEEecchH-----HHhhCCCC-------CC--ceE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 274 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~----~~~~l~~~~---p~~~~~~~Dl~~-----~~~~a~~~-------~r--v~~ 274 (390)
+.|++.+. -.+..+|+|+|.|.|. +...++.+. |.+++|+++.|. .++.+.++ -+ .+|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 45777776 4466789999999994 556666653 778899998622 23332221 12 334
Q ss_pred EE--CCCCCCC-------CCCc--EEEeccccccCChh------HHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 275 VG--GNMFESV-------PEGD--AILMKWILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 275 ~~--gd~~~~~-------p~~D--~i~~~~vlh~~~d~------~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.. .+-.+++ ..++ +|-+..-||++.++ ....+|+.++ .|+|.- ++++|.-.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~v-vv~~E~ea 246 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKV-VVLVEQEA 246 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCE-EEEEeecC
Confidence 33 1222211 1232 33466677888632 2345776664 788874 44555443
No 342
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=91.19 E-value=0.44 Score=36.17 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHHhChhHHHhhc-C-CCCHHHHHHHhccCCCCCCCcHHHHHH----------HHhcCcce-eecccCCCcceecCcc
Q 016366 42 QAAIQLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLR----------LLVSHRVL-ECSVSGGERLYALNPV 108 (390)
Q Consensus 42 ~~a~~lglfd~L~~~-g-~~t~~eLa~~~~~~~~~~~~~l~r~L~----------~L~~~gll-~~~~~~~~~~y~~t~~ 108 (390)
+.=++..|+..|... + +.++.|||..+++ ++..+..-|+ .|+.+|+| .+........|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677889999876 3 8999999999999 8888887775 48999999 3321122346999987
Q ss_pred ccccc
Q 016366 109 SKYFV 113 (390)
Q Consensus 109 s~~l~ 113 (390)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 76544
No 343
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.11 E-value=1.6 Score=42.37 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHH----HhhCCCC--CCceEEECCCCC---CCCC---CcEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHV----VQDAPSY--AGVEHVGGNMFE---SVPE---GDAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~----~~~a~~~--~rv~~~~gd~~~---~~p~---~D~i 289 (390)
..++.+|||..++.|.=+.++++..++ ..++.+|. +.- .+++++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999998776 45578886 333 3333322 446777777643 1221 2666
Q ss_pred Eec------cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 290 LMK------WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 290 ~~~------~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++. .+++ .+...+ -.++|..+.+.|||||.|+-++=.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 432 2332 222221 346899999999999998865533
No 344
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.03 E-value=0.31 Score=47.55 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCceEEECCCCC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 270 AGVEHVGGNMFE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 270 ~rv~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
++|+++++++.+ ..|.+ |.+++..++-+++++...+.++.+.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 889999999877 34444 9999999999999999999999999999999999987665443
No 345
>PRK06474 hypothetical protein; Provisional
Probab=90.81 E-value=0.37 Score=41.77 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=54.4
Q ss_pred HHHHHHHHHhChhHHHhhcC-CCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCcccc
Q 016366 38 PMATQAAIQLGVFEIIAKAG-ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK 110 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g-~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~~s~ 110 (390)
..+|.--.++.|++.|..++ ++|+.+|++.+ ++ +...+.|.|+.|+..|+|...... .+..|++++.+.
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677778899999998765 49999999999 67 788899999999999999863211 123477777654
Q ss_pred cc
Q 016366 111 YF 112 (390)
Q Consensus 111 ~l 112 (390)
.+
T Consensus 81 ~~ 82 (178)
T PRK06474 81 KI 82 (178)
T ss_pred ee
Confidence 44
No 346
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.69 E-value=0.62 Score=43.41 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCe-EEEecc-hHHHhhCCCC-----CCceEEECCCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~ 281 (390)
+..+.++.+. ..+....+|.--|.|.++..+++++|... .+++|. |.+++.|++. +|+.++.++|.+
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3456677776 56678999999999999999999998665 889988 8899988863 588888887754
No 347
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.52 E-value=0.35 Score=41.89 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.3
Q ss_pred HhChhHHHhh--cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCcccccccc
Q 016366 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~--~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~~ 114 (390)
++.++-.|.. ++++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ ..+|+.+..+..
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3445556653 247899999999999 9999999999999999999754433332 566776665553
No 348
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.44 E-value=1.9 Score=41.30 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECC---CCCCCCC-CcEEEeccccccC
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd---~~~~~p~-~D~i~~~~vlh~~ 298 (390)
..+..+|+=+|+| -|+.+..++++.- .+++++|. ++-.+.+++...-.++... ..+.... .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567888888877 4578899999776 89999998 6778888877665666543 2222222 377765443 1
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..+....+.|++||+++++-..
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 4477778899999999987766
No 349
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=1.6 Score=43.67 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=78.9
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccC--CcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hH
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PH 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~--~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~ 261 (390)
.|+-+++||-....|.++. ...+.+..+.-+ ....|+=+|+|-|-+..+.++. ...++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 4556677877766666543 345566655222 2567899999999877776654 23455666664 54
Q ss_pred HHhhCCC------CCCceEEECCCCC-CCC-C-CcEEEeccccccCChhH-HHHHHHHHHHhCCCCcEEE
Q 016366 262 VVQDAPS------YAGVEHVGGNMFE-SVP-E-GDAILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 262 ~~~~a~~------~~rv~~~~gd~~~-~~p-~-~D~i~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~ll 321 (390)
++-..+. ..+|+++..||.+ ..| . +|+++ +..|.-|.|.+ ..+-|.-+.+.|||+|.-+
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 4333322 2689999999998 544 3 38875 33444444332 3345888888999998655
No 350
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=90.39 E-value=0.34 Score=33.17 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred CC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+ |..+||+.+++ ....+.+.++.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 99999999999999999975
No 351
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.32 E-value=0.54 Score=37.70 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=44.3
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..+...|.+.+.++|.+|..+++..+|+ +...+.+.++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 44567788899999999999999999999 99999999999999998875
No 352
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.16 E-value=0.24 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
|+|-+|||+.+|+ .+.-+.|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 999999999999998875
No 353
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=90.08 E-value=0.67 Score=32.34 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|..+||+.+++ +...+.+.|..|...|+|..
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 99999999999999999975
No 354
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=90.06 E-value=0.14 Score=39.14 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=46.9
Q ss_pred hhHHHh--hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~--~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
+||.|. .+|+..+.-|.-.+++ +......+++.|+..|++.. .+++ .|.+|+.+..|..
T Consensus 20 i~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~---~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 20 IFDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIK---QDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEe---ccCCccceEEEChhHHHHHH
Confidence 355555 3468889999999999 99999999999999996664 2333 6999999987753
No 355
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.89 E-value=2.2 Score=41.72 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=62.5
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECC----CCC---CC-CC-C-cEEEec
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFE---SV-PE-G-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd----~~~---~~-p~-~-D~i~~~ 292 (390)
..+..+||.+|||. |..+..+++....-+++.++. ++..+.+++...+..+... +.+ .+ +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999988 889999999876445777765 6677766654223332211 111 11 11 3 777553
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 293 W---------------ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 293 ~---------------vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
- +|+..++. ...+..+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 2 12222333 3578899999999999998754
No 356
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=89.84 E-value=0.36 Score=40.96 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.5
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|+++|-.+|.+|-+|||+.+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 457888876679999999999999 99999999999999999964
No 357
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=89.75 E-value=0.4 Score=36.71 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 61 ~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.+||+.+++ ++..+.+.++.|...|+|... .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 999999999999999999973 335788888776554
No 358
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=89.72 E-value=0.45 Score=39.18 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=38.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 55 ~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.+|+.|.+|||.+.|+ ..+.+...|.++++-|-+.+.+....=+|..+
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3589999999999999 99999999999999999987643222246554
No 359
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=89.70 E-value=1.5 Score=39.48 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=67.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-----hHHHhhCCCCCCceEEECCCCCCCCC----C--cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVPE----G--DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-----~~~~~~a~~~~rv~~~~gd~~~~~p~----~--D~i~~~ 292 (390)
.++..+||-+|+++|....++..- .|+--+..++. .+.+..|++++||--+.-|+..|..- + |+|+..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 567889999999999988887763 35544444443 35677888889999888898876431 2 766543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+- -|| +.+-+--++...|++||.++|.=
T Consensus 234 -va--qpd-q~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 234 -VA--QPD-QARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred -CC--Cch-hhhhhhhhhhhhhccCCeEEEEE
Confidence 22 233 34455667888999999888743
No 360
>PHA02943 hypothetical protein; Provisional
Probab=89.62 E-value=0.52 Score=39.04 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=37.2
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|++.| +.|+.|..|||+++|+ .....+-.|..|...|.|.+.
T Consensus 15 eILE~L-k~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLL-ADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHH-hcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 456677 4478999999999999 888999999999999999863
No 361
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.48 E-value=0.93 Score=47.87 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=57.9
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------C-----CCeEEEecc-h---HHHhhCC----------------------C
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP----------------------S 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~Dl-~---~~~~~a~----------------------~ 268 (390)
..-+|+|+|=|+|.......+.. | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998666655433 4 467787774 2 1111110 0
Q ss_pred -------CCC--ceEEECCCCCCCC---C-CcEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 269 -------YAG--VEHVGGNMFESVP---E-GDAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 269 -------~~r--v~~~~gd~~~~~p---~-~D~i~~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
..+ +++..||+.+-++ . .|++++.. .=..-|+-.-..+|+.+++.++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 012 3466688765222 2 38877653 11122444456889999999999998763
No 362
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=88.94 E-value=0.88 Score=35.00 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.++|..|||+.+|+ ++..+.|.|..|...|+|.+. ..-+.|..|
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 38999999999999 999999999999999999863 223566666
No 363
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=88.50 E-value=0.36 Score=48.91 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCC
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD 117 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~ 117 (390)
.+..++..|...+++|..+||+++++ ++..+.+.++.|.+.|+|.+.. .....|.+|+.+..+.....
T Consensus 7 ~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~-~~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 7 NEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE-RVEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe-eeEEEEEECHHHHHHHHhcC
Confidence 45567777776679999999999999 9999999999999999998642 12356899999987776544
No 364
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=88.31 E-value=0.9 Score=36.11 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=38.4
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.-|++.|... +++|++||.+++.-. +..+..-+-|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45578888764 489999999998420 011788899999999999999864
No 365
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=87.90 E-value=0.59 Score=39.94 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
-..+..|+..|.++|..|..+||+++|+ .+..+.+=++-|...|++.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeE
Confidence 3468889999998889999999999999 9999999999999999997
No 366
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=87.63 E-value=0.69 Score=38.99 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
..+..|++.|..+|..|..+||+++|+ .+..+.+=++-|...|++.
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCee
Confidence 367789999998889999999999999 9999999999999999997
No 367
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=87.06 E-value=0.77 Score=38.45 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=42.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..+..|...|.+++..|..+||+++|+ .+..+.+-++-|...|++..
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456788899998889999999999999 99999999999999999984
No 368
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=86.84 E-value=1.1 Score=41.00 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
..|..++-.|-..|+.|+.|||+.+|+ +.+.+-..|+-|...|++.... ..+..|+.-+-..
T Consensus 16 ~yEa~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 16 EYEAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 345556677776689999999999999 9999999999999999998632 3556788766444
No 369
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=86.72 E-value=0.56 Score=46.87 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHhChhHHHhhcCC-CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCC
Q 016366 43 AAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~-~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~ 118 (390)
++.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|++.... .....|.+|+.+..++....+
T Consensus 2 ~~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 2 AMAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 3567778888887555 899999999999 9999999999999999997642 245679999999988876653
No 370
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=86.38 E-value=0.94 Score=41.60 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|.+.|.++|.+++.|||+.+++ .+.-++|-|+.|.+.|++.+
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r 51 (251)
T PRK13509 8 QILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKK 51 (251)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 347888888889999999999999 99999999999999999986
No 371
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=86.01 E-value=0.45 Score=37.30 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=33.3
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.|..+|.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 17 ~Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 17 RILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 36788876679999999999999 99999999999999999975
No 372
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=85.92 E-value=0.88 Score=41.85 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.8
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.++|.++| -++-+||.+++|+ ++..+.|+|+-|+..|++++.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~ 243 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE 243 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE
Confidence 456778888776 4999999999999 999999999999999999875
No 373
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.89 E-value=0.76 Score=38.03 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=62.9
Q ss_pred eEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCC-C-cEEEeccccccCCh---------hHHHHHHHHH
Q 016366 253 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE-G-DAILMKWILHCWDD---------DHCLRILKNC 310 (390)
Q Consensus 253 ~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~-~-D~i~~~~vlh~~~d---------~~~~~~L~~~ 310 (390)
++.++|+ +++++.++++ +||+++..+=.. -++. . |+++++-- ++|. +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 4688998 7778777652 579998875443 3555 3 88877643 3442 2356789999
Q ss_pred HHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 311 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 311 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.+.|+|||.+.|+-..-.+.. ..+. ....+|.+-|.+.-|.+.+...+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG----~eE~-----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG----KEES-----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH----HHHH-----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCC----HHHH-----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999999988665422210 0000 013455555566778888777765
No 374
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=85.57 E-value=0.76 Score=32.30 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=35.7
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.|-..|..|..+|.+.+++ +++.++.-|-.|..+|++..
T Consensus 17 ~V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 17 KVGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 46677777789999999999999 99999999999999999974
No 375
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=85.35 E-value=1.5 Score=32.27 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l 112 (390)
.|+...+||+++++ ++.-++.-|..|.++|+|+... ...+.|..|..+-.+
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p-~~s~GriPT~~aYr~ 72 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP-HPSGGRIPTDKAYRA 72 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC-CCCCCCCcCHHHHHH
Confidence 49999999999999 9999999999999999997310 123556666655433
No 376
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=85.30 E-value=1.7 Score=35.00 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccCC-
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSGG- 99 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~~- 99 (390)
.+..+..+++..+=|..-+|+...+ |+....||-..++ + .+..|.+-|+.|+..|+|.+.....
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 5678888999999998887775443 5888999999988 8 8999999999999999998743211
Q ss_pred --CcceecCccccccc
Q 016366 100 --ERLYALNPVSKYFV 113 (390)
Q Consensus 100 --~~~y~~t~~s~~l~ 113 (390)
.-.|++|+.+..+.
T Consensus 76 PprveY~LT~~G~~L~ 91 (120)
T COG1733 76 PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CceeEEEEhhhHHHHH
Confidence 13488888776555
No 377
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.29 E-value=7.9 Score=33.79 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=72.3
Q ss_pred CcceEEEEcCCccHHHHHHHh----hCCCCeEEEecc--hHHHhhCCCCCCceEEECCCCCC-CC-------CC--cEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFES-VP-------EG--DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~----~~p~~~~~~~Dl--~~~~~~a~~~~rv~~~~gd~~~~-~p-------~~--D~i~ 290 (390)
++..|+++|.-.|..+..++. ..-..+++++|+ ...-..|++.++|.|+.|+-.+| +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 568899999988876665543 333466777765 22223444468999999998763 11 11 5667
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE 332 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 332 (390)
|-..-|++. .+.+.|+-....|..|-++++.|...++-+.
T Consensus 149 ilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchHH--HHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 777777653 3557788888889899999999988877553
No 378
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=85.26 E-value=1.2 Score=33.92 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++.|+..|...||=.+.-+|..+++ +...+.+.++-|..+|+|++
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler 53 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLER 53 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 45667888887789999999999999 99999999999999999997
No 379
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=85.24 E-value=4.2 Score=31.30 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=49.1
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh--hhhhcCCCc------ccCHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL--LMTRDGGGR------ERTKKEYTE 364 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~g~------~~t~~e~~~ 364 (390)
.+|=|++.++..++|+++...- .|.+++ .+. |..+ .+.+. ....+|++. ...++++.+
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t--~~~~if-TfA-P~T~----------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRT--RGSLIF-TFA-PRTP----------LLALMHAIGKLFPRPDRSPRIYPHREEDLRR 68 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhc--cCcEEE-EEC-CCCH----------HHHHHHHHhccCCCCCCCCcEEEeCHHHHHH
Confidence 4555789899999999987764 355554 222 2211 11111 111233332 236899999
Q ss_pred HHHHCCCCeeEEEecCCcee
Q 016366 365 LAIAAGFKGINFASCVCNLY 384 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~~~~~ 384 (390)
.++++||++.+...+.+++.
T Consensus 69 ~l~~~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSGFY 88 (97)
T ss_pred HHHhCCCeeeecccccCcCh
Confidence 99999999999988876554
No 380
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.81 E-value=1.6 Score=40.80 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=66.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhC----CCC--CCceEEECCCCCC----CCC-CcEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDA----PSY--AGVEHVGGNMFES----VPE-GDAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a----~~~--~rv~~~~gd~~~~----~p~-~D~i~~ 291 (390)
..++.+|||..++.|.=+..+++... ...++..|+ +.-+... ++. .++.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999876 567888886 3333332 222 4577776666542 122 277654
Q ss_pred c------cccccCChhH--------------HHHHHHHHHHhC----CCCcEEEEEec
Q 016366 292 K------WILHCWDDDH--------------CLRILKNCYKAV----PGNGKVIVMNS 325 (390)
Q Consensus 292 ~------~vlh~~~d~~--------------~~~~L~~~~~~L----~pgG~lli~e~ 325 (390)
. .++..-|+-. -.++|+++.+.+ +|||+++-++=
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2 2232222211 346899999999 99999886553
No 381
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=84.70 E-value=0.95 Score=41.60 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=40.7
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
...|.+.|.++|.+++.|||+.+++ .+.-++|-|..|...|++.+
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r 51 (252)
T PRK10906 7 HDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILR 51 (252)
T ss_pred HHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4457788888789999999999999 99999999999999999986
No 382
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=84.27 E-value=3.1 Score=31.84 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
-..+.++||+..|.+ +++|-.|||+++|+ ....+.|+-+.|.
T Consensus 39 ~~l~~R~~i~~~Ll~-~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 39 EDLGDRIRIVNELLN-GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 345678999998876 59999999999999 8888888777654
No 383
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=84.20 E-value=1.6 Score=41.05 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=39.4
Q ss_pred cceEEEEcCCccHH-HHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEEC----CCCCCCC---CC-cEE
Q 016366 228 VERLVDVGGGFGVT-LSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESVP---EG-DAI 289 (390)
Q Consensus 228 ~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~g----d~~~~~p---~~-D~i 289 (390)
..++||||+|.... ...-++.+ +-++++.|+ +..++.|++. ++|+++.. +++..+. +. |..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998864 34444444 788888888 7778877752 57888654 3444221 12 899
Q ss_pred EeccccccCChh
Q 016366 290 LMKWILHCWDDD 301 (390)
Q Consensus 290 ~~~~vlh~~~d~ 301 (390)
+|+=-+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 999888875443
No 384
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=83.44 E-value=1.6 Score=39.78 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|.+.|.+++.++.+|||+.+++ .+.-++|.|..|...|.+.+
T Consensus 7 ~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 7 QAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 347788887789999999999999 99999999999999999975
No 385
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=83.22 E-value=1.8 Score=38.05 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=39.6
Q ss_pred HhChhHHHhh----cC-CCCHHHHHHHhccCCCCC-CCcHHHHHHHHhcCcceeecccCCCccee
Q 016366 46 QLGVFEIIAK----AG-ELSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (390)
Q Consensus 46 ~lglfd~L~~----~g-~~t~~eLa~~~~~~~~~~-~~~l~r~L~~L~~~gll~~~~~~~~~~y~ 104 (390)
+..|++.|.+ +| +.|..|||+.+|+ . +..+.+.|+.|...|++.. .++.|+
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~----~~~~~~ 64 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER----DPGKPR 64 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec----CCCCCC
Confidence 4445555542 23 7899999999999 8 8999999999999999984 455554
No 386
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=82.95 E-value=1.4 Score=32.15 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..+++.++..+ +++..+|++.++. |++.+-..++.|...|++..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVK 50 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEE
Confidence 4556777777643 8999999999999 99999999999999999985
No 387
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=82.78 E-value=1.5 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=27.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHH
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L 86 (390)
++..|+..|.+++..|..+||+++|+ .+..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 56678889988889999999999999 666665544443
No 388
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=82.45 E-value=2.1 Score=36.78 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCHHHHHHHh--ccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccc
Q 016366 59 LSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (390)
Q Consensus 59 ~t~~eLa~~~--~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~ 111 (390)
.++++||+++ ++ ...-++.-|+.|+.+|+++. .+++.|..|..+-.
T Consensus 40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecceee
Confidence 3899999999 99 89999999999999999997 35578988875543
No 389
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=82.41 E-value=1.1 Score=32.39 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHhChhH-----HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 39 MATQAAIQLGVFE-----IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 39 ~~l~~a~~lglfd-----~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.++..+.+.|..+ .+.. ++|.++||..+|+ ....+.+.|+.|...|++.. ..+.+...
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~----~~~~i~I~ 68 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV----KRGKIIIL 68 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----cCCEEEEC
Confidence 4555566666541 1122 8999999999999 99999999999999999985 34454443
No 390
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=82.35 E-value=2.2 Score=34.86 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHh----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|+-|...|-..|+.|+.+|.+.+ ++ ...-+..+|+-|...|+|.+.
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 466778888777899999977766 56 788899999999999999864
No 391
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=82.09 E-value=1.3 Score=44.47 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCC
Q 016366 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (390)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~ 118 (390)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....+
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 345667777876 347999999999999 9999999999999999997642 245679999999988877654
No 392
>PRK13699 putative methylase; Provisional
Probab=81.91 E-value=5.4 Score=36.03 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred ceEEECCCCC---CCCCC--cEEEec-------------cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCc
Q 016366 272 VEHVGGNMFE---SVPEG--DAILMK-------------WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV 333 (390)
Q Consensus 272 v~~~~gd~~~---~~p~~--D~i~~~-------------~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 333 (390)
++++.||..+ .+|.. |+|+.. .+-.....+....++.+++|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred chHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 334 SSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 334 ~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.........+..+++++||.+....
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 393
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=81.87 E-value=1.6 Score=38.61 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.|++|+|+++|+ ...-.+|.|.+|++.|++..+
T Consensus 173 ~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 173 ELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred ccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 9999999999999 899999999999999999753
No 394
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=81.56 E-value=1.4 Score=40.64 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=41.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..|.+.|.++|.+++.|||+.+++ .+.-++|=|+.|...|++.+
T Consensus 7 ~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r 51 (256)
T PRK10434 7 QAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIR 51 (256)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4457888988889999999999999 99999999999999999986
No 395
>PF13730 HTH_36: Helix-turn-helix domain
Probab=81.16 E-value=1.3 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcce
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
.|.+.||+.+|+ ..+.+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 489999999999 999999999999999985
No 396
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.02 E-value=2.8 Score=38.62 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 016366 241 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 241 ~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 319 (390)
++..+.++.++.++++.|. +..++.+.+.+-+.-...+ .+.+.++|+|+++- |-....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4677888889999999998 7777777655444443333 22344459988765 445577888888888888775
Q ss_pred EE
Q 016366 320 VI 321 (390)
Q Consensus 320 ll 321 (390)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 397
>PRK05638 threonine synthase; Validated
Probab=81.00 E-value=2 Score=42.96 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=47.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhc--cCCCCCCCcHHHHHHHHhcCcceeec-ccCCCcceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~--~~~~~~~~~l~r~L~~L~~~gll~~~-~~~~~~~y~~t~~s~~l~ 113 (390)
++.|+..|.+ ++.+.-||++.++ + .+..+.+.|+.|...|+|... .......|++|+.+..+.
T Consensus 373 r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence 3446677776 5899999999998 7 888999999999999999742 111122488888776444
No 398
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=80.88 E-value=2.2 Score=42.29 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|.+.+
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l~r 352 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVLAR 352 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEecC
Confidence 39999999999999 99999999999999999985 3445676554
No 399
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=80.86 E-value=2.1 Score=40.72 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
...|.+.|..+.+.+.++||+++++ .+..+.+.++.|...|++..+ ..+..|++.+..
T Consensus 6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~--~~~~Gy~L~~~~ 63 (319)
T PRK11886 6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFS--VKGKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEE--ecCCeEEecCcc
Confidence 3456777776558999999999999 999999999999999994432 233468775543
No 400
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=80.78 E-value=8.7 Score=34.19 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-C-eEEEecc-hHHHhhCCCC---------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-I-KAVNFDL-PHVVQDAPSY--------------------------------- 269 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~-~~~~~Dl-~~~~~~a~~~--------------------------------- 269 (390)
+.+-++-|=.||.|.++.-+.--+++ + .+++.|+ +++++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 56779999999999887776655543 2 3566676 7888877651
Q ss_pred ---------------CCceEEECCCCCCC-------CCC-cEEEecccccc---CC----hhHHHHHHHHHHHhCCCCcE
Q 016366 270 ---------------AGVEHVGGNMFESV-------PEG-DAILMKWILHC---WD----DDHCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 270 ---------------~rv~~~~gd~~~~~-------p~~-D~i~~~~vlh~---~~----d~~~~~~L~~~~~~L~pgG~ 319 (390)
......+.|++++- +.+ |+|+..--..+ |. ..-+.++|..++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 11457888998832 123 88876543332 32 34467899999999976677
Q ss_pred EEEEe
Q 016366 320 VIVMN 324 (390)
Q Consensus 320 lli~e 324 (390)
+.+++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66644
No 401
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=80.73 E-value=3 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=37.4
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|...++.. ..|.+||-+++|+ +...|...|..|...|++.+
T Consensus 9 ~IL~~ls~~-c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 9 KILIILSKR-CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHHhc-cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence 455667764 9999999999999 99999999999999999986
No 402
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=80.59 E-value=1.6 Score=40.47 Aligned_cols=46 Identities=9% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-...|.+.|..+|.+++.|||+.+++ .+.-++|=|..|...|++.+
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r 63 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVR 63 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEE
Confidence 34567888888789999999999999 99999999999999999986
No 403
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=80.23 E-value=2 Score=39.24 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=53.7
Q ss_pred CcceEEEEcCCccHHHHHH---HhhC--CCCeEEEecc----hHHHh---------------------------hCCCC-
Q 016366 227 NVERLVDVGGGFGVTLSMI---TSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l---~~~~--p~~~~~~~Dl----~~~~~---------------------------~a~~~- 269 (390)
-++-|+|+||=.|..+..+ ++.+ ++-++.++|- |+.-. ...+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 4578999999999766544 3333 4556788873 22111 11111
Q ss_pred ---CCceEEECCCCCCCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 270 ---AGVEHVGGNMFESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 270 ---~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++|+++.|.|.+.+|.. +-|-+.++=.++= +.....|..++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997655532 2222112111222 23568999999999999998875544
No 404
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.09 E-value=12 Score=34.76 Aligned_cols=122 Identities=8% Similarity=0.014 Sum_probs=71.0
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CC---C-CCcEEEeccccccCChh--
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV---P-EGDAILMKWILHCWDDD-- 301 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~---p-~~D~i~~~~vlh~~~d~-- 301 (390)
+++|+-||.|.+...+.+..-+ .+..+|+ +..++..+.+-.-..+.+|+.+ .. . ..|+++...-...++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 6899999999998888876422 2455666 6666655543112256778776 21 2 23999888776655421
Q ss_pred ------HHHHHHHHHHH---hCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 302 ------HCLRILKNCYK---AVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 302 ------~~~~~L~~~~~---~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
....++..+.+ .++| .+++.|.+..-.. ..+....+++.+.|++.||.
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~---------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLT---------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhc---------------------cCchHHHHHHHHHHHhCCcE
Confidence 11123333333 3334 3666777632100 01112467788889999998
Q ss_pred eeE
Q 016366 373 GIN 375 (390)
Q Consensus 373 ~~~ 375 (390)
+..
T Consensus 138 ~~~ 140 (275)
T cd00315 138 VYW 140 (275)
T ss_pred EEE
Confidence 643
No 405
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.75 E-value=14 Score=37.65 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=60.3
Q ss_pred CCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC--------------C-------
Q 016366 226 QNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE--------------S------- 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~--------------~------- 282 (390)
.++.+|+=+|||. |..+...++... .+++++|. ++.++.+++.. .+++..|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3578999999996 556667777664 47899997 77777777642 3322211110 1
Q ss_pred -----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 283 -----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 283 -----~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
....|+++..-..-.-+.+. -+.+.+.+.+||||.++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~--lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPK--LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcc--hHHHHHHHhcCCCCEEEEEcc
Confidence 11239988766442222221 335999999999999776543
No 406
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=79.47 E-value=2.3 Score=38.13 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+.+...|||+++|+ .+..+...++-|+..|+++. .+.+.|..|+.+..++.
T Consensus 24 p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~e~l~ 74 (260)
T COG1497 24 PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEK---EGRGEYEITKKGAEWLL 74 (260)
T ss_pred CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceee---cCCeeEEEehhHHHHHH
Confidence 57999999999999 89999999999999999996 34568999998875554
No 407
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=79.45 E-value=1.4 Score=29.11 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=23.9
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 91 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gl 91 (390)
.++.+...+.+ +.|..+||+.+|+ ++..+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~--G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE--GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH--T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666666 8999999999999 99999999998776664
No 408
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.40 E-value=12 Score=36.23 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=64.6
Q ss_pred cceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCC-C------CC--CCC-cEEEecccc
Q 016366 228 VERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF-E------SV--PEG-DAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~-~------~~--p~~-D~i~~~~vl 295 (390)
..+++=+|||. |.++..+++.+...++++.|. +.-++.|++......+.-.-. . .. ..+ |+++=..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34899999995 778888999998889999998 788888877432222221111 0 11 123 88765543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
....+..+.++++|||.++++-....+
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124788999999999999987766444
No 409
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.07 E-value=9.3 Score=35.67 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=57.5
Q ss_pred ceEEEEcCC--ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCC-CCCCCCCcEEEeccccccCChhHHH
Q 016366 229 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNM-FESVPEGDAILMKWILHCWDDDHCL 304 (390)
Q Consensus 229 ~~iLDiG~G--~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~-~~~~p~~D~i~~~~vlh~~~d~~~~ 304 (390)
.+|+=+|.| .|+++..+.++.+.+.+++.|. ...++.+.+.+-+.-...+. ......+|+|+.+--+ ....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHHH
Confidence 467778877 4678888888888888999997 45555555432222222222 1234445998877544 4466
Q ss_pred HHHHHHHHhCCCCcEEE
Q 016366 305 RILKNCYKAVPGNGKVI 321 (390)
Q Consensus 305 ~~L~~~~~~L~pgG~ll 321 (390)
.+++++...|+||..+.
T Consensus 79 ~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 79 EVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHhcccCCCCCEEE
Confidence 88999998999876443
No 410
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=78.50 E-value=2.3 Score=36.36 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
-+|..+||+++|+ ..+-+.|.+..|...+++.+ ...+.|.++|.-
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~~ 119 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKK---IRNGAYMINPNF 119 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEE---ccCCeEEECcHH
Confidence 4689999999999 89999999999999999986 355789888843
No 411
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.37 E-value=11 Score=35.69 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=50.0
Q ss_pred cceEEEEcCCc-c-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHH
Q 016366 228 VERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCL 304 (390)
Q Consensus 228 ~~~iLDiG~G~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~ 304 (390)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+.+..+|+|+..- |.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35788899886 3 34444544433346778887 5555555443211111122111233458887664 333445
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 016366 305 RILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 305 ~~L~~~~~~L~pgG~lli 322 (390)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888875543
No 412
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=78.32 E-value=3.1 Score=37.51 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=39.4
Q ss_pred ChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.|.. +|-++..+||+++|+ .+..+++-++.|.+.|++..
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 47888887 479999999999999 99999999999999999985
No 413
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=78.32 E-value=2.1 Score=34.75 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCce
Q 016366 304 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNL 383 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 383 (390)
..+|+++++.++|||.+.- .. ....+++.|.++||.+.+.-..++--
T Consensus 70 ~e~~~~l~~~~~~~~~l~T--ys-------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLAT--YS-------------------------------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEE--S---------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEE--ee-------------------------------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 4789999999999997653 11 02235888999999998877776555
Q ss_pred eEEEEeC
Q 016366 384 YIMEFFK 390 (390)
Q Consensus 384 ~vi~~~k 390 (390)
.++.+.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 5555543
No 414
>PF13518 HTH_28: Helix-turn-helix domain
Probab=78.31 E-value=2.9 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=30.5
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 91 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gl 91 (390)
+.....+ +.|..++|..+|+ ++..+.+|++.....|+
T Consensus 5 iv~~~~~--g~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 5 IVELYLE--GESVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred HHHHHHc--CCCHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 3444444 4499999999999 99999999999988885
No 415
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=78.04 E-value=2.3 Score=39.11 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=40.9
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|.+.|.++|.++++|||+.+++ .+.-++|=|+.|...|++.+
T Consensus 8 ~~Il~~l~~~g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R 51 (253)
T COG1349 8 QKILELLKEKGKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLR 51 (253)
T ss_pred HHHHHHHHHcCcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEE
Confidence 457888988899999999999999 99999999999999999997
No 416
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=77.72 E-value=2.6 Score=42.03 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=40.2
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
|-..|.. ||.|+.||++.+|+ ....+++.|..| .|+|...+....-.|++..
T Consensus 5 ~~~~L~~-g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~ 56 (442)
T PRK09775 5 LTTLLLQ-GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKARATRYALLR 56 (442)
T ss_pred HHHHHhc-CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccCceEEEEecc
Confidence 4456665 79999999999999 999999999999 8888764332233577664
No 417
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=77.64 E-value=2.6 Score=29.60 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.3
Q ss_pred CC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+ |..+||+++++ ...-+++-|+.|++.|++..
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEE
Confidence 56 99999999999 99999999999999999986
No 418
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.63 E-value=23 Score=28.18 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=54.6
Q ss_pred CCcceEEEEcCCccHH-HHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCC-CC--CC-cEEEeccccccCCh
Q 016366 226 QNVERLVDVGGGFGVT-LSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES-VP--EG-DAILMKWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~-~p--~~-D~i~~~~vlh~~~d 300 (390)
...++|++||-|.=.. +..++++. ..++..|+.+- .+. ..++++..|+++| .. .+ |+|++-. |.
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 3456999999997754 44444443 55677776322 232 6799999999985 22 34 8887654 55
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
++....+-.+.++.+ ..++|.
T Consensus 81 pEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 81 PELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred HHHHHHHHHHHHhhC--CCEEEE
Confidence 666677777777763 444443
No 419
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=77.46 E-value=2.1 Score=38.22 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHH
Q 016366 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (390)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~ 85 (390)
..-.+|..|++.|-||. .. ..+..|||+.+|+ .+..+...||-
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR--~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR--RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 45679999999999999 54 7999999999999 77776666664
No 420
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=77.41 E-value=2.5 Score=41.35 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=36.6
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-------CCCceEEEC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGG 277 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~rv~~~~g 277 (390)
...+||||.|||.++.-.+++..+ .++.++. ..|.+.|++ .++|+++.-
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 347899999999999998888755 4777776 778777775 255666543
No 421
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=76.94 E-value=12 Score=34.69 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=44.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCe----EEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIK----AVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDD 301 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~----~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~ 301 (390)
.+...||-+|++.|.....|.+.+|+.. ++.+|-.......++.++|++++. .++++
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~-------------------fftee 117 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR-------------------FFTEE 117 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------HH
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh-------------------hCCHH
Confidence 3457899999999999999999998865 899995333333333333444331 13443
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
.++++++...+ ..++|+|.-..+
T Consensus 118 ----~~~~~~~~~~~-~illISDIRS~~ 140 (294)
T PF01358_consen 118 ----YARRLRDKLNL-KILLISDIRSGD 140 (294)
T ss_dssp ----HHHHHHHHHTT-EEEEEE------
T ss_pred ----HHHHHHhhcCC-CeEEEEecccCC
Confidence 35566666666 778888875444
No 422
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=76.60 E-value=11 Score=31.34 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=50.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-----hHHHhhCCCCCCceEEECCCCCCCCC----C-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVPE----G- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~rv~~~~gd~~~~~p~----~- 286 (390)
+....+. .-.+-|||+|=|+|..=.++.+.+|+-++.++|. |+... +.=.++.||+.+-++. +
T Consensus 20 ~a~~~v~--~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g~ 92 (160)
T PF12692_consen 20 WAAAQVA--GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFGA 92 (160)
T ss_dssp HHHHHTT--T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S
T ss_pred HHHHHhc--CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcCC
Confidence 4444444 2347899999999999999999999999999995 22222 2235777777652221 1
Q ss_pred cEEEeccccccCChhH----HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 DAILMKWILHCWDDDH----CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+.+...=+.....++ +..+=.-+..+|.|||.++-..+.
T Consensus 93 ~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 93 GAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp -EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred ceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2222222222112222 222333456678899987754444
No 423
>PRK10742 putative methyltransferase; Provisional
Probab=75.73 E-value=6.1 Score=36.04 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHHHhhccCCcc--eEEEEcCCccHHHHHHHhhCCCCeEEEecc
Q 016366 217 RILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL 259 (390)
Q Consensus 217 ~l~~~~~~~~~~~--~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl 259 (390)
.+++++. ++++. +|||.=+|.|.-+..++.+ +++++.++.
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr 118 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLER 118 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEEC
Confidence 4556655 55554 8999999999999999988 455888886
No 424
>PRK09954 putative kinase; Provisional
Probab=75.73 E-value=3.2 Score=40.18 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=40.1
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
+..|+..|.+++.+|..+||+.+++ .+..+.+.|+.|...|++.
T Consensus 5 ~~~il~~l~~~~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRNPLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 4458888888889999999999999 9999999999999999986
No 425
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=75.51 E-value=4.3 Score=32.68 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=48.3
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+.|.-|.++|-..||.|+.||-+.+.-..+-.+.-+.-+|.-|+..|+|.+. ++++.|.-.|
T Consensus 6 ~aE~eVM~ilW~~~~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~--kdgr~~~y~p 67 (123)
T COG3682 6 AAEWEVMEILWSRGPATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRK--KDGRAFRYSP 67 (123)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhh--hcCCeeeeec
Confidence 4677889999888999999999888762222455678899999999999875 5566776666
No 426
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=75.49 E-value=2.2 Score=33.15 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHHhChhHHHhh----cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 44 AIQLGVFEIIAK----AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 44 a~~lglfd~L~~----~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+.-.|++.|.. .-++++++|++++++ +...++..++.|+..|.+-
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIY 96 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEe
Confidence 344556666655 128999999999999 9999999999999999884
No 427
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=75.42 E-value=6.3 Score=36.42 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=40.9
Q ss_pred CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccC
Q 016366 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (390)
Q Consensus 60 t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 115 (390)
+.-.|++...+ +.+....+++.|...|+|.. +++...+|..+..|...
T Consensus 36 d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~----~~g~v~~TekG~E~~e~ 83 (354)
T COG1568 36 DFWKIVDYSDL----PLPLVASILEILEDEGIVKI----EEGGVELTEKGEELAEE 83 (354)
T ss_pred chHhhhhhccC----CchHHHHHHHHHHhcCcEEE----ecCcEeehhhhHHHHHH
Confidence 88889999998 88999999999999999996 34557889888877764
No 428
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=75.04 E-value=5.1 Score=38.66 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=32.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 259 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl 259 (390)
++++.+..+.+...++|+|.|.|.++..+.-.| ++.+.++|-
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIeg 184 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEG 184 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEecc
Confidence 344444336677899999999999999888877 678888885
No 429
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=74.80 E-value=13 Score=34.44 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhc--cCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~--~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
..++++||++++ + ....++.-|+.|+..|+++. .++|.|..|..+-
T Consensus 137 ~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk---~~~g~y~~t~~~l 184 (271)
T TIGR02147 137 ADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKK---NEDGFYKQTDKAV 184 (271)
T ss_pred CCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeE---CCCCcEEeeccee
Confidence 448899999998 5 77788999999999999996 3567898887543
No 430
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=74.78 E-value=5.7 Score=38.15 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=38.3
Q ss_pred cCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC----C----CCeEEEecc
Q 016366 195 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----P----QIKAVNFDL 259 (390)
Q Consensus 195 ~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p----~~~~~~~Dl 259 (390)
+-|+..+.|.+..+.+-- ...+.+. .+.+..+++||+|.|.++..+++.. | .+++..++.
T Consensus 50 TApels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 50 TAPELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred echhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 356677777765533322 2222233 3445789999999999998888753 3 456777775
No 431
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=74.56 E-value=1.9 Score=37.68 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=40.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..|.+.|..+|.+++++||+.+++ .+.-++|=|..|...|++.+
T Consensus 9 ~~~Il~~l~~~~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 9 QKALQELIEENPFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHCCCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 3456788888889999999999999 99999999999999999985
No 432
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.24 E-value=4.3 Score=37.69 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=53.1
Q ss_pred hHHHhhCCC-CCCceEEECCCCC-CC--CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 260 PHVVQDAPS-YAGVEHVGGNMFE-SV--PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 260 ~~~~~~a~~-~~rv~~~~gd~~~-~~--p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+-|.+++ ..||.++.+|+.+ -- |.+ |-+++..+=.+++|.....++.++.+.+.||.++++-...
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 444444444 3689999999977 22 333 9999999999999999999999999999999998886554
No 433
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=74.21 E-value=8.7 Score=31.12 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCcceEEEEcCCccH-HHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCC---CC-cEEEeccccccCCh
Q 016366 226 QNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d 300 (390)
.+..++++||-|.=. .+..|.+.. +.+++.|+... .+. .+++++.-|+++|-. ++ |+|++.+ |.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PP 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CC
Confidence 345699999999875 444455543 77788887222 222 679999999998533 34 9988766 34
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.+...-+.++.+.. |.-++|...
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred hHHhHHHHHHHHHh--CCCEEEECC
Confidence 44556666666655 455555433
No 434
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=74.08 E-value=2.9 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=23.5
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
++..|++..|+|+++||.++|. ....+...|..+-
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 7788888559999999999999 6666666665543
No 435
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=73.64 E-value=3.5 Score=34.49 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=37.0
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.-|++.|-.+|.+|-++||+.+|+ +...++++|..|...+++.
T Consensus 4 ~~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 4 FLVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred EeehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 347888877789999999999999 9999999999999955543
No 436
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=72.91 E-value=4 Score=35.26 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCCccee
Q 016366 58 ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (390)
Q Consensus 58 ~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~ 104 (390)
..|-.+||+.+ |+ .+..++|.++.|+..|++....+.++.+|.
T Consensus 70 fpSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rrDS~NgkRy~ 113 (177)
T PF03428_consen 70 FPSNAQLAERLNGM----SERTLRRHLARLVEAGLIVRRDSPNGKRYA 113 (177)
T ss_pred ecCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeeccCCCCCccC
Confidence 56889999999 99 999999999999999999874333344454
No 437
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=72.44 E-value=4.4 Score=34.85 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=39.8
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.-|++.|.+.|-+|=++||..+|+ ...-++++|.+|...|++...
T Consensus 21 ~~v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 457788887668999999999999 999999999999999999853
No 438
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=71.82 E-value=7.6 Score=29.12 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=43.0
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++....+..++..|.+..+.++.+|+..+++ ....+.+.|..|...|++...
T Consensus 21 ~l~~~~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 21 ALADPTRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HhCCHHHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 4444467777777776347899999999999 999999999999999999863
No 439
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=71.15 E-value=19 Score=33.40 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=48.4
Q ss_pred eEEEEcCCc--cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHH
Q 016366 230 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 306 (390)
Q Consensus 230 ~iLDiG~G~--G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~ 306 (390)
+|.=||+|. |.++..+.++ +.+++++|. ++.++.+.+...+.....+. +...++|+|+++- |.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 466678774 4555555554 356777886 55666554433222211111 1223348887664 55666788
Q ss_pred HHHHHHhCCCCcEE
Q 016366 307 LKNCYKAVPGNGKV 320 (390)
Q Consensus 307 L~~~~~~L~pgG~l 320 (390)
++++...++|+..+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 99998888877543
No 440
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.95 E-value=10 Score=35.00 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-----CCCeEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL 259 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~Dl 259 (390)
+.+...++|+|||.|.++..+++.. +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5667799999999999999999988 5678899996
No 441
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.33 E-value=7.9 Score=34.38 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..-.+.+++..+..++++++.|+++.+++ +...++-.||.|.+.++++.
T Consensus 98 ~~ns~R~~Iy~~i~~nPG~~lsEl~~nl~i----~R~TlRyhlriLe~~~li~a 147 (240)
T COG3398 98 FLNSKRDGIYNYIKPNPGFSLSELRANLYI----NRSTLRYHLRILESNPLIEA 147 (240)
T ss_pred HhhhhHHHHHHHhccCCCccHHHHHHhcCC----ChHHHHHHHHHHHhCcchhh
Confidence 334456678888888889999999999999 99999999999999999974
No 442
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=70.23 E-value=4.1 Score=32.53 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|++|||+.+.. .++..+.+|+.|...|++.-
T Consensus 19 ~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W 51 (115)
T PF12793_consen 19 EVTLDELAELLFC----SRRNARTLLKKMQEEGWITW 51 (115)
T ss_pred ceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeee
Confidence 7899999999999 99999999999999999984
No 443
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.18 E-value=9.5 Score=32.88 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=32.1
Q ss_pred cEEEeccccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|+++++||++.. +...+++.+++++|+|...++......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999864 446678888888898887766655543
No 444
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.86 E-value=4.7 Score=36.95 Aligned_cols=27 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
.+..+++++.+.++.||.++++|.-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 467899999999998899999998763
No 445
>PRK12423 LexA repressor; Provisional
Probab=68.57 E-value=6.8 Score=34.60 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+.|..|||+++|+. .+..+++.|+.|+..|+|..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~ 58 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEV 58 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEe
Confidence 67999999999951 66678999999999999986
No 446
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=68.23 E-value=7.3 Score=34.04 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=35.4
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+.++..+.-++|+|..+|++..|+ +. ..+++.|...|++.+
T Consensus 93 LEtLaiIay~qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e 133 (188)
T PRK00135 93 LEVLAIIAYKQPITRIEIDEIRGV----NS---DGALQTLLAKGLIKE 133 (188)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEE
Confidence 445777777789999999999999 64 789999999999985
No 447
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=68.11 E-value=3.9 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=30.9
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
-++.|++.|-+.+.+|.++||+.+|+ .++-++.-+..|-
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~----S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNI----SERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 35667778866679999999999999 8888888777765
No 448
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=67.66 E-value=8.9 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=42.0
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++..+.. .++|-++||+++|+ ....+-..++.|...|+=.++ .....|++.....
T Consensus 11 ll~~~~~-~~~SGe~La~~Lgi----SRtaVwK~Iq~Lr~~G~~I~s--~~~kGY~L~~~~~ 65 (79)
T COG1654 11 LLLLLTG-NFVSGEKLAEELGI----SRTAVWKHIQQLREEGVDIES--VRGKGYLLPQLPD 65 (79)
T ss_pred HHHHcCC-CcccHHHHHHHHCc----cHHHHHHHHHHHHHhCCceEe--cCCCceeccCccc
Confidence 3444443 38999999999999 999999999999999987654 3445787766443
No 449
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=67.03 E-value=6.6 Score=26.87 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|-+++..||++.|+ ...-+-.-||-|.+.|+++.
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 45688999999999 88889999999999999985
No 450
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=66.89 E-value=7.3 Score=31.40 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~ 111 (390)
-|.|.++||..++- +...++..|.+|...|+++. .+++.|..+...+.
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~---~ed~~i~i~~~~~~ 99 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEI---DEDGVIYIPNWEKH 99 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---ecCCeEEeecHHHH
Confidence 39999999999999 99999999999999999987 45677777765443
No 451
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=66.60 E-value=6.2 Score=31.33 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=40.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.|+-|.+.|-+.|++|+.||.+.++-...-.+.-+.-+|+-|+..|+|...
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~ 54 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTRE 54 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEe
Confidence 567788888887899999999998762122466788899999999999874
No 452
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.10 E-value=17 Score=33.35 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=63.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCC--CC-cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP--EG-DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p--~~-D~i~~~~vlh~~~d~ 301 (390)
+.++..-+|+|.-.|..+-.+.++ +..++.+|...|.+..-..++|+.+..|-+.-.| .. |-.+|..|=.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVEk----- 281 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVEK----- 281 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhcC-----
Confidence 456788999999999999999987 5789999987777766677889999999988444 33 7777665421
Q ss_pred HHHHHHHHHHHhCCCC
Q 016366 302 HCLRILKNCYKAVPGN 317 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pg 317 (390)
..++-..+...|..|
T Consensus 282 -P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 -PARVAALIAKWLVNG 296 (358)
T ss_pred -cHHHHHHHHHHHHcc
Confidence 224555566677543
No 453
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=66.04 E-value=4.8 Score=25.45 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHh
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~ 87 (390)
+.|+++||..+|+ ++..+.|..+...
T Consensus 8 ~~~l~~iA~~~g~----S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 8 KLTLEDIAEQAGF----SPSYFSRLFKKET 33 (42)
T ss_dssp S--HHHHHHHHTS-----HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 7999999999999 9999999888643
No 454
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=65.93 E-value=7.3 Score=30.57 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=46.2
Q ss_pred CCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC--CC-----CCcEEEeccccccCChhHHHH
Q 016366 236 GGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--VP-----EGDAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 236 ~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~--~p-----~~D~i~~~~vlh~~~d~~~~~ 305 (390)
||.|.++..+++.. .+.+++++|. ++.++.+++.. +.++.||..++ +. .+|.+++..- .|... .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n-~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEEN-L 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHH-H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHH-H
Confidence 45566666666543 3346888886 66777766544 88999999873 21 2366554331 33333 3
Q ss_pred HHHHHHHhCCCCcEEEE
Q 016366 306 ILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 306 ~L~~~~~~L~pgG~lli 322 (390)
.+....+.+.|..++++
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 34444455667776664
No 455
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=65.79 E-value=5.7 Score=29.84 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-+|+..||+++++ .-...++.||.|...|++..
T Consensus 41 ~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~ 73 (86)
T PRK09334 41 IVTPYTLASKYGI----KISVAKKVLRELEKRGVLVL 73 (86)
T ss_pred EEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999964
No 456
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=65.70 E-value=6.5 Score=34.24 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
.+|..++|+++++ .+....|+|..|...|++.+...+.+.....|..+..++.
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~~~~~Gq~i~iTekG~~~L~ 71 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRTISKRGQLITITEKGIDLLY 71 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEEecCCCcEEEehHhHHHHHH
Confidence 5899999999999 9999999999999999998754344445566666555543
No 457
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=65.66 E-value=20 Score=35.64 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=57.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCC-------CCCceEEECCCCC---CCC--CC-cEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE---SVP--EG-DAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~-------~~rv~~~~gd~~~---~~p--~~-D~i~ 290 (390)
.+..+.|+|.|.|.-.-.+....++ -.++.+|. ..|...... ...+.....-+.+ |.+ .+ |+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3567888888866443333333333 34677776 344443332 1122222212332 332 23 9999
Q ss_pred eccccccCChhH-HHH-HHHHHHHhCCCCcEEEEEecccC
Q 016366 291 MKWILHCWDDDH-CLR-ILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 291 ~~~vlh~~~d~~-~~~-~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+.+++|++.... ... .-...++..++|+.+++++.-..
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999987443 122 33445667889999999887543
No 458
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=65.44 E-value=6.4 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=35.1
Q ss_pred HhhcCCCCHHHHHHHhccCCCCCC-CcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 53 IAKAGELSAPEIAAQLQAQNVKAP-MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 53 L~~~g~~t~~eLa~~~~~~~~~~~-~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
|....+++.+++.++.|. +. ......+..+...|++.. +++.+++|+.+.
T Consensus 15 LR~~~Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~----~~~~l~lT~~G~ 65 (66)
T PF06969_consen 15 LRCNEGIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEI----DGGRLRLTEKGR 65 (66)
T ss_dssp HHHHSEEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE-----SSEEEE-TTTG
T ss_pred HHhHCCcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEE----eCCEEEECcccC
Confidence 333348999999999998 53 333677889999999985 678999998764
No 459
>PRK01381 Trp operon repressor; Provisional
Probab=65.22 E-value=9.4 Score=29.47 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHH
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L 86 (390)
..+.+++|+..|.. |.+|-.|||+.+|+ ....+.|--++|
T Consensus 40 al~~R~~I~~~L~~-g~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 40 ALGTRVRIVEELLR-GELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHHc-CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 35678999999998 68999999999999 655555555544
No 460
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.54 E-value=59 Score=30.96 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=65.2
Q ss_pred ccCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCC--ceEEEC-----CCCC----CCCC--CcE
Q 016366 224 GFQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAG--VEHVGG-----NMFE----SVPE--GDA 288 (390)
Q Consensus 224 ~~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~r--v~~~~g-----d~~~----~~p~--~D~ 288 (390)
+...+.++|-+|+| .|..+...++.+...++++.|+ +.-++.|++..- +..... ++.+ -... .|+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 36678999999999 5788888999998889999998 788888887421 111111 1101 0111 277
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+-+..++ ..++....++++||.+++...-.
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCC
Confidence 76666554 44667788999999988876543
No 461
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=64.36 E-value=13 Score=32.18 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=40.8
Q ss_pred HHhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|.|.|..+| ..|+-+||.++|+ +..-+-|-|.-|...|.|..
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~ 51 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSC 51 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEec
Confidence 4567899999887 7999999999999 88889999999999999864
No 462
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=64.20 E-value=3.9 Score=29.11 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
-.+-.|.+.|...|+.++-.+|...|+. ....-+-+.|..|...|.|...+ ..+-.|+++.
T Consensus 4 ~~ee~Il~~L~~~g~~~a~~ia~~~~L~--~~kk~VN~~LY~L~k~g~v~k~~-~~PP~W~l~~ 64 (66)
T PF02295_consen 4 DLEEKILDFLKELGGSTATAIAKALGLS--VPKKEVNRVLYRLEKQGKVCKEG-GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHHTSSEEEHHHHHHHHT--S-HHHHHHHHHHHHHTTSEEEEC-SSSTEEEE-H
T ss_pred hHHHHHHHHHHhcCCccHHHHHHHhCcc--hhHHHHHHHHHHHHHCCCEeeCC-CCCCceEecc
Confidence 3566788889887777777777777761 03678999999999999997532 2344566654
No 463
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=64.14 E-value=7.1 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|..+||+.+|+ .+..+.|+|+.|...|++..
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~ 200 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISA 200 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999985
No 464
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=63.97 E-value=8 Score=34.50 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=36.8
Q ss_pred ChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|++.+.+ | +.|..|||+++++ .+.-+++.+..|+..|++..
T Consensus 166 ~Vl~~~~~-g~~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~ 209 (225)
T PRK10046 166 AVRKLFKE-PGVQHTAETVAQALTI----SRTTARRYLEYCASRHLIIA 209 (225)
T ss_pred HHHHHHHc-CCCCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEE
Confidence 45667665 4 6899999999999 99999999999999999984
No 465
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=63.86 E-value=5.5 Score=28.95 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCccee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~ 93 (390)
.+|..|||+.+|+ .+..++.++..+...|.+.
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~ 63 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLV 63 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHH
Confidence 8999999999999 9999999999888888765
No 466
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=63.68 E-value=8.2 Score=36.12 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=44.9
Q ss_pred CceEEECCCCCCCCC-----C--cEEE-eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc--cCCCCCcchHHhhh
Q 016366 271 GVEHVGGNMFESVPE-----G--DAIL-MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI--VPEIPEVSSAARET 340 (390)
Q Consensus 271 rv~~~~gd~~~~~p~-----~--D~i~-~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~~~~~~~~~ 340 (390)
+|.|++.|..+.++. + |+|+ .++..|.+.++ +.++++|+|.|++ |.. +-+-+.+
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKfmvdLrKE------- 264 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKFMVDLRKE------- 264 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-EcchhheeCCHH-------
Confidence 467777776654431 2 8874 45666666553 5568899987664 443 1111100
Q ss_pred hhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 341 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 341 ~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
-...+ .+.+.++++++||+...
T Consensus 265 ------q~~~F-------~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 265 ------QLQEF-------VKKVKELAKAAGFKPVT 286 (289)
T ss_pred ------HHHHH-------HHHHHHHHHHCCCcccc
Confidence 01111 67789999999998654
No 467
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=62.87 E-value=7.8 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|-++||+.+|+ .+..+.|.|+.|...|++..
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999985
No 468
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=62.23 E-value=12 Score=33.69 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|-++||+.+|+ .+..+.|.|+.|...|++..
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~ 211 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGL 211 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe
Confidence 7899999999999 99999999999999999984
No 469
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=61.94 E-value=7.5 Score=25.13 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=19.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHH
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR 84 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~ 84 (390)
+.+.+.. +.|+.+||+.+|+ ...-+.|+|+
T Consensus 14 i~~l~~~--G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAE--GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp HHHHHHT--T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred HHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 3444444 5999999999999 7777776653
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.86 E-value=16 Score=31.20 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=40.5
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+-.+.-|++.|... +++|+++|.+++.-. +..+..-+-|.|+.|+..|+|.+-
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45566778888754 499999999998641 112667789999999999999863
No 471
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=61.41 E-value=65 Score=33.42 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC-eEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccc
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWI 294 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~v 294 (390)
-++-..|.-+...+.+||+||..|....-.++..|-- -++++|+..+- |+|. |+. .
T Consensus 33 lQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------------p~~~--c~t---~ 89 (780)
T KOG1098|consen 33 LQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------------PIPN--CDT---L 89 (780)
T ss_pred HHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------------cCCc--cch---h
Confidence 3555666534677889999999999999999988743 35777852111 2222 222 2
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..+.+.++|..-|+++...=+. -++++|..
T Consensus 90 v~dIttd~cr~~l~k~l~t~~a--dvVLhDga 119 (780)
T KOG1098|consen 90 VEDITTDECRSKLRKILKTWKA--DVVLHDGA 119 (780)
T ss_pred hhhhhHHHHHHHHHHHHHhCCC--cEEeecCC
Confidence 2344566777777777666544 34555554
No 472
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.92 E-value=67 Score=27.04 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=44.6
Q ss_pred CcceEEEEcCCccHH--HHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCCcEEEeccccccCChhHH
Q 016366 227 NVERLVDVGGGFGVT--LSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHC 303 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~--~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~ 303 (390)
.+.+||=||||.=.. +..|++. +..+++++ |+..+...+.+.+++....+.+ ++..+|+|++.- ++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHHH
Confidence 457899999996544 3345554 34555555 4443333334566766666655 454558877642 34444
Q ss_pred HHHHHHHHHh
Q 016366 304 LRILKNCYKA 313 (390)
Q Consensus 304 ~~~L~~~~~~ 313 (390)
-..+....+.
T Consensus 84 N~~i~~~a~~ 93 (157)
T PRK06719 84 NMMVKQAAHD 93 (157)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 473
>PRK08507 prephenate dehydrogenase; Validated
Probab=60.83 E-value=32 Score=31.79 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=47.6
Q ss_pred eEEEEcCCc--cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHH
Q 016366 230 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 306 (390)
Q Consensus 230 ~iLDiG~G~--G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~ 306 (390)
+|.=||+|. |.++..+.+.....+++++|. +..++.+.+..-+... .+.. +...+|+|+++- |+.....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~-~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI-VSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc-CCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466678775 456666665544456777886 5555554433222111 1211 222358877654 56667788
Q ss_pred HHHHHHhCCCCcEE
Q 016366 307 LKNCYKAVPGNGKV 320 (390)
Q Consensus 307 L~~~~~~L~pgG~l 320 (390)
+..+.. ++|+..+
T Consensus 75 ~~~l~~-l~~~~iv 87 (275)
T PRK08507 75 LPKLLD-IKENTTI 87 (275)
T ss_pred HHHHhc-cCCCCEE
Confidence 888888 8877643
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=60.71 E-value=7.3 Score=31.08 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|.+. ++.|+++|-+++.-. +..+..-+-|.|+.|+..|++.+.
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 45566788888765 499999999998641 011445688999999999999864
No 475
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=60.61 E-value=8.7 Score=34.44 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
++|.++||+.+|+ .+..+.|.|+.|...|++.. ..+.+...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~----~~~~i~i~ 224 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAV----KGKYITIE 224 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe----cCCEEEEc
Confidence 6899999999999 99999999999999999995 44455443
No 476
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=60.33 E-value=12 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.+.++|++|+.++-+.+|+ .....-.+|++|=..|+..+.
T Consensus 3 ~~~~~~~~itv~~~rd~lg~----sRK~ai~lLE~lD~~g~T~R~ 43 (50)
T PF09107_consen 3 ELLQKNGEITVAEFRDLLGL----SRKYAIPLLEYLDREGITRRV 43 (50)
T ss_dssp HHHHTTSSBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCcCcHHHHHHHHCc----cHHHHHHHHHHHhccCCEEEe
Confidence 45666689999999999999 899999999999999999863
No 477
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=60.32 E-value=8.8 Score=32.74 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+|+|++||++.+|+ ....++.-++-|...|+|..
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~ 73 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKK 73 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHh
Confidence 49999999999999 99999999999999999975
No 478
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=60.27 E-value=50 Score=30.93 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred CcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCC-cEEEeccccccCChhHH
Q 016366 227 NVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHC 303 (390)
Q Consensus 227 ~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~ 303 (390)
...++|=+||| .|.++..+++...-..++.+|. +.-++.+.... . .|..+....+ |+|+-.-- .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECCC-----C---
Confidence 34578878865 5778888888775444566665 44555554321 1 1111112223 77764322 1
Q ss_pred HHHHHHHHHhCCCCcEEEEEec
Q 016366 304 LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~ 325 (390)
...+..+.+.|+++|+++++-.
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEee
Confidence 1457888899999999997654
No 479
>PRK10736 hypothetical protein; Provisional
Probab=59.79 E-value=10 Score=36.82 Aligned_cols=51 Identities=8% Similarity=-0.090 Sum_probs=42.0
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
..|++.|.. .|.++++|+.++|+ +...+...|-.|.-.|++.+ ..++.|+.
T Consensus 311 ~~v~~~l~~-~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~---~~g~~~~~ 361 (374)
T PRK10736 311 PELLANVGD-EVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAA---VPGGYVRL 361 (374)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEE---cCCcEEEE
Confidence 457777765 48999999999999 99999999999999999986 34555554
No 480
>PF14502 HTH_41: Helix-turn-helix domain
Probab=59.66 E-value=19 Score=23.81 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
=.|++|+++++++ ..-.+..-|+.|...|.+...
T Consensus 6 i~tI~e~~~~~~v----s~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 6 IPTISEYSEKFGV----SRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred cCCHHHHHHHhCc----chhHHHHHHHHHHHCCcEEee
Confidence 4689999999999 899999999999999999763
No 481
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=59.40 E-value=11 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++|-++||+.+|+ .+..+.|.|..|...|++..
T Consensus 149 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 181 (202)
T PRK13918 149 YATHDELAAAVGS----VRETVTKVIGELSREGYIRS 181 (202)
T ss_pred cCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEc
Confidence 7899999999999 99999999999999999984
No 482
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.35 E-value=31 Score=35.13 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=56.2
Q ss_pred CcceEEEEcCCcc-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC--------------C--------
Q 016366 227 NVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE--------------S-------- 282 (390)
Q Consensus 227 ~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~--------------~-------- 282 (390)
++.+++=+|+|.= ..+..+++.. +..++++|. +..++.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4579999999965 5666666654 356788886 6667666653 23333333211 0
Q ss_pred CC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 283 VP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 283 ~p----~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
++ +.|+|+..-.+..-+.+. -+.++..+.||||+.++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEE
Confidence 12 239997666554433332 36788889999998755
No 483
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=58.69 E-value=30 Score=29.19 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhCh-------hHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 36 VLPMATQAAIQLGV-------FEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 36 ~~~~~l~~a~~lgl-------fd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
|...++.++.+.++ +-.+...+ |.++.+|+..+++. |-..+.--||-|...|++..-+...+-.|..|+
T Consensus 68 W~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~gkevTy~vTa 144 (199)
T COG5631 68 WQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGSGKEVTYEVTA 144 (199)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCCCceEEEEEec
Confidence 55556666654442 22233233 89999999999983 666778889999999999864332334577777
Q ss_pred ccc
Q 016366 108 VSK 110 (390)
Q Consensus 108 ~s~ 110 (390)
.+.
T Consensus 145 ~G~ 147 (199)
T COG5631 145 LGH 147 (199)
T ss_pred chH
Confidence 554
No 484
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=58.56 E-value=64 Score=29.93 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=51.4
Q ss_pred cceEEEEcCCccHHHHHHHhhCCC----CeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~ 303 (390)
+..||-+|++.|.....|.+.+++ ++++.+|-.......+... ++-+... +-+++
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~----------------nV~Li~~----f~de~- 119 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLR----------------DVTLVTR----FVDEA- 119 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCC----------------cEEeeHh----hcCHH-
Confidence 349999999999999999888876 5788888321111111111 2322222 22333
Q ss_pred HHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 304 LRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
-++..++.+.+.-.++|+|.-..+
T Consensus 120 --~i~~~r~~~~~~~illISDIRS~~ 143 (300)
T PHA03108 120 --YLRRLKKQLHPSKIILISDIRSKR 143 (300)
T ss_pred --HHHHHHHhccCCCEEEEEeecccC
Confidence 477777888888999999986533
No 485
>PRK00215 LexA repressor; Validated
Probab=57.75 E-value=15 Score=32.29 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.|..|||+++|+. +...+.++|+.|+..|++.+.
T Consensus 23 ~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 23 PPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 78999999999982 567899999999999999863
No 486
>PHA02591 hypothetical protein; Provisional
Probab=57.44 E-value=12 Score=27.30 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHH
Q 016366 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR 84 (390)
Q Consensus 51 d~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~ 84 (390)
..|.+. +.|.++||+.||+ +.+.++++++
T Consensus 53 ~eL~eq-GlSqeqIA~~LGV----sqetVrKYL~ 81 (83)
T PHA02591 53 HELARK-GFTVEKIASLLGV----SVRKVRRYLE 81 (83)
T ss_pred HHHHHc-CCCHHHHHHHhCC----CHHHHHHHHh
Confidence 345553 8999999999999 8888888775
No 487
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.30 E-value=66 Score=31.49 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=57.7
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc----hHHHhhCCCC----CCceEEECCCCCCCCCC-cEEEeccccccCC
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL----PHVVQDAPSY----AGVEHVGGNMFESVPEG-DAILMKWILHCWD 299 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~~----~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~ 299 (390)
.+||-|+-..|.++..++...|. ...|. ....++++.. +.+++. +..+++|.+ |+|++..- -+
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~P---K~ 117 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVP---KT 117 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeC---CC
Confidence 38999999999999999976553 33562 1122222222 124443 333456665 88765432 12
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-......|..+.+.|+||+.+++.+..
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 355677899999999999998776554
No 488
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=57.05 E-value=9.6 Score=29.84 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
-+|+..||+++++ .-...++.|+.|.+.|++..
T Consensus 59 ~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~ 91 (105)
T PF03297_consen 59 LITPSVLSERLKI----NGSLARKALRELESKGLIKP 91 (105)
T ss_dssp CECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEE
T ss_pred EeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999975
No 489
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.98 E-value=1.2e+02 Score=28.43 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=53.6
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC-------CC-CC-cEEEecc
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VP-EG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~-------~p-~~-D~i~~~~ 293 (390)
+....+||..|+| .|..+..+++.. +.+++..+. +...+.+++.. ++.+..+-... .+ .+ |+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 5566788888876 478888888876 456666664 55555554322 22221111111 11 22 7766332
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
-. ...++.+.+.|+++|+++....
T Consensus 241 g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 GT--------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CC--------HHHHHHHHHHhhcCCEEEEECC
Confidence 11 1468888999999999987643
No 490
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=56.83 E-value=15 Score=29.33 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.7
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|.+.... +.|+.|||..+++ +..-.+-++--|...|+|..
T Consensus 48 Il~lC~~--~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 48 ILELCRR--PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRV 87 (114)
T ss_pred HHHHHCC--CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEE
Confidence 4444444 9999999999999 88888889999999999985
No 491
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=56.57 E-value=18 Score=31.83 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++-.+||+.+|+ ...-++.-|+.|.+.|+|+.
T Consensus 34 ~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~ 66 (212)
T TIGR03338 34 KLNESDIAARLGV----SRGPVREAFRALEEAGLVRN 66 (212)
T ss_pred EecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEE
Confidence 6888999999999 99999999999999999986
No 492
>PRK11642 exoribonuclease R; Provisional
Probab=56.56 E-value=14 Score=39.92 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=40.0
Q ss_pred hhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 49 VFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 49 lfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
|++.|.. ..|++..+|+++++++...+...|.+.|+.|...|.+.. ...+.|.+.
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~---~~~~~~~~~ 79 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVF---TRRQCYALP 79 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEE---cCCceEecC
Confidence 5555554 249999999999999322234569999999999999975 344556554
No 493
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.46 E-value=13 Score=33.06 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=50.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
.|.-...-.+++.|.+++..|.-+||..+|+ +...+.-.+..|...|++.++.....-.|+.|+.-
T Consensus 170 ~Lkn~~~k~I~~eiq~~~~~t~~~ia~~l~l----s~aTV~~~lk~l~~~Gii~~~~~Gr~iiy~in~s~ 235 (240)
T COG3398 170 SLKNETSKAIIYEIQENKCNTNLLIAYELNL----SVATVAYHLKKLEELGIIPEDREGRSIIYSINPSI 235 (240)
T ss_pred HhhchhHHHHHHHHhcCCcchHHHHHHHcCc----cHHHHHHHHHHHHHcCCCcccccCceEEEEeCHHH
Confidence 3444455578888888667999999999999 89899999999999999987422112247777643
No 494
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=56.45 E-value=12 Score=30.92 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=25.7
Q ss_pred hhHHHhhcCC--CCHHHHHHHhccCCCCCCCcHHHHHH
Q 016366 49 VFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLR 84 (390)
Q Consensus 49 lfd~L~~~g~--~t~~eLa~~~~~~~~~~~~~l~r~L~ 84 (390)
|-+.|.+++. .|+.+|++.+|+ ++..+.+|++
T Consensus 35 V~~yLr~~p~~~ati~eV~e~tgV----s~~~I~~~Ir 68 (137)
T TIGR03826 35 VYKFLRKHENRQATVSEIVEETGV----SEKLILKFIR 68 (137)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCc----CHHHHHHHHH
Confidence 4456666654 899999999999 8888888777
No 495
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=56.42 E-value=15 Score=32.73 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++..+||+.+|+ ...-++.-|+.|.+.|+|+.
T Consensus 30 ~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~ 62 (224)
T PRK11534 30 KLRMSLLTSRYAL----GVGPLREALSQLVAERLVTV 62 (224)
T ss_pred cCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEE
Confidence 6888999999999 99999999999999999986
No 496
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=55.99 E-value=34 Score=32.41 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred cceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC---CCCCCcEEEeccccccCCh
Q 016366 228 VERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE---SVPEGDAILMKWILHCWDD 300 (390)
Q Consensus 228 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~---~~p~~D~i~~~~vlh~~~d 300 (390)
+.+|.-||+|. |..+..++--. +..++.+|+ .+-+.+.... .|+...-.+... .+.++|+++..-.+---.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788899995 56666666543 567788886 3344433322 456655544332 4556699886655544444
Q ss_pred hHHHHHHHHHHHhCCCCcEEE
Q 016366 301 DHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~ll 321 (390)
+. -+.++..+.|+||+.++
T Consensus 247 Pk--Lvt~e~vk~MkpGsViv 265 (371)
T COG0686 247 PK--LVTREMVKQMKPGSVIV 265 (371)
T ss_pred ce--ehhHHHHHhcCCCcEEE
Confidence 44 56888899999999765
No 497
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=55.89 E-value=15 Score=29.44 Aligned_cols=47 Identities=17% Similarity=0.049 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
-|.++++||..++- +...++.-|..+...|+++. .+++.|..+...+
T Consensus 50 ipy~~e~LA~~~~~----~~~~V~~Al~~f~k~glIe~---~d~g~i~i~~~~~ 96 (119)
T TIGR01714 50 APYNAEMLATMFNR----NVGDIRITLQTLESLGLIEK---KNNGDIFLENWEK 96 (119)
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---ecCCcEEehhHHH
Confidence 49999999999999 99999999999999999997 3456676766443
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=55.14 E-value=18 Score=30.15 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHhChhHHHhhc--CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA--GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~--g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|... +++|++||-+++.-. +..+..-+-|.|+.|+..|+|.+-
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~ 71 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45667788888753 499999999988531 112667789999999999999753
No 499
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=55.06 E-value=9.7 Score=30.64 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=40.2
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCC
Q 016366 63 EIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (390)
Q Consensus 63 eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~ 116 (390)
+||+.+++ +-+-|-.+++++..+|+++. .+|-..+|+.+..|....
T Consensus 2 ~La~~l~~----eiDdL~p~~eAaelLgf~~~----~~Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADELHL----EIDDLLPIVEAAELLGFAEV----EEGDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHhCC----cHHHHHHHHHHHHHcCCeee----cCCcEEeccchHHHHHCC
Confidence 58899999 99999999999999999995 566779999999998654
No 500
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=54.87 E-value=12 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=20.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCCcHHHHH
Q 016366 55 KAGELSAPEIAAQLQAQNVKAPMMLDRML 83 (390)
Q Consensus 55 ~~g~~t~~eLa~~~~~~~~~~~~~l~r~L 83 (390)
.+|.++..+||+++|+ .+..++.|=
T Consensus 19 ~~g~i~lkdIA~~Lgv----s~~tIr~WK 43 (60)
T PF10668_consen 19 SNGKIKLKDIAEKLGV----SESTIRKWK 43 (60)
T ss_pred hCCCccHHHHHHHHCC----CHHHHHHHh
Confidence 3468999999999999 887777764
Done!